Query 015120
Match_columns 413
No_of_seqs 113 out of 1302
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:18:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03167 Chaperonin-60 beta su 100.0 9.9E-84 2.2E-88 680.2 43.0 412 1-413 189-600 (600)
2 PRK00013 groEL chaperonin GroE 100.0 1.2E-82 2.6E-87 667.3 44.7 406 1-408 133-541 (542)
3 PRK12849 groEL chaperonin GroE 100.0 2E-82 4.4E-87 665.5 45.5 407 1-410 133-540 (542)
4 PRK12852 groEL chaperonin GroE 100.0 3.8E-82 8.2E-87 665.3 45.5 409 1-411 134-545 (545)
5 PRK12850 groEL chaperonin GroE 100.0 9.9E-82 2.1E-86 661.1 44.6 408 1-411 134-544 (544)
6 PRK12851 groEL chaperonin GroE 100.0 2.1E-81 4.5E-86 658.3 44.6 404 1-407 134-540 (541)
7 PRK14104 chaperonin GroEL; Pro 100.0 5.1E-81 1.1E-85 655.4 44.7 396 1-398 134-530 (546)
8 PTZ00114 Heat shock protein 60 100.0 4.4E-81 9.5E-86 658.1 44.1 395 1-396 145-543 (555)
9 TIGR02348 GroEL chaperonin Gro 100.0 7.4E-80 1.6E-84 645.2 43.6 391 1-394 132-523 (524)
10 CHL00093 groEL chaperonin GroE 100.0 9.6E-80 2.1E-84 645.0 42.8 392 1-395 133-527 (529)
11 cd03344 GroEL GroEL_like type 100.0 1E-79 2.2E-84 643.3 42.5 388 1-391 131-519 (520)
12 KOG0356 Mitochondrial chaperon 100.0 9.7E-75 2.1E-79 579.2 29.6 393 1-397 147-541 (550)
13 cd03343 cpn60 cpn60 chaperonin 100.0 4.6E-63 9.9E-68 519.5 35.7 332 1-392 134-516 (517)
14 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 2.1E-63 4.6E-68 517.2 30.2 328 1-393 131-483 (484)
15 TIGR02339 thermosome_arch ther 100.0 1.6E-62 3.5E-67 515.3 35.6 332 1-392 135-519 (519)
16 cd03338 TCP1_delta TCP-1 (CTT 100.0 2.8E-62 6.2E-67 513.2 33.6 339 1-392 127-515 (515)
17 TIGR02347 chap_CCT_zeta T-comp 100.0 8.1E-62 1.8E-66 509.8 36.9 330 6-395 143-528 (531)
18 cd03335 TCP1_alpha TCP-1 (CTT 100.0 4.1E-62 8.9E-67 512.9 34.7 339 1-394 128-527 (527)
19 TIGR02340 chap_CCT_alpha T-com 100.0 2.8E-61 6.1E-66 507.3 36.3 339 2-395 133-532 (536)
20 TIGR02344 chap_CCT_gamma T-com 100.0 5.5E-61 1.2E-65 504.4 35.6 335 1-395 135-524 (525)
21 cd03340 TCP1_eta TCP-1 (CTT or 100.0 6.9E-61 1.5E-65 503.3 35.8 336 1-393 135-520 (522)
22 cd03339 TCP1_epsilon TCP-1 (CT 100.0 9.9E-61 2.1E-65 502.3 34.3 330 1-390 142-525 (526)
23 TIGR02346 chap_CCT_theta T-com 100.0 1.4E-60 3.1E-65 500.9 35.5 338 4-402 141-529 (531)
24 TIGR02345 chap_CCT_eta T-compl 100.0 1.5E-60 3.2E-65 500.4 35.5 335 1-393 136-520 (522)
25 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2.6E-60 5.5E-65 498.1 36.6 334 1-395 134-516 (517)
26 TIGR02342 chap_CCT_delta T-com 100.0 1.7E-60 3.7E-65 499.4 34.0 339 1-392 128-516 (517)
27 TIGR02343 chap_CCT_epsi T-comp 100.0 4.3E-60 9.3E-65 497.5 34.7 332 1-392 146-531 (532)
28 PTZ00212 T-complex protein 1 s 100.0 9.9E-60 2.2E-64 495.0 36.3 333 1-394 146-527 (533)
29 TIGR02341 chap_CCT_beta T-comp 100.0 1.4E-58 3.1E-63 484.6 37.2 334 1-395 135-517 (519)
30 COG0459 GroL Chaperonin GroEL 100.0 1.2E-60 2.6E-65 496.1 20.1 370 2-397 131-518 (524)
31 cd03337 TCP1_gamma TCP-1 (CTT 100.0 4.3E-59 9.4E-64 484.7 30.9 314 1-391 135-479 (480)
32 KOG0361 Chaperonin complex com 100.0 4.2E-59 9E-64 447.9 23.8 336 9-402 154-532 (543)
33 cd03341 TCP1_theta TCP-1 (CTT 100.0 6.7E-58 1.4E-62 474.9 31.7 309 9-392 140-471 (472)
34 cd00309 chaperonin_type_I_II c 100.0 2.1E-57 4.5E-62 471.0 34.1 314 1-391 127-464 (464)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.8E-55 4E-60 458.2 30.9 332 2-394 109-485 (485)
36 KOG0363 Chaperonin complex com 100.0 6.2E-53 1.3E-57 403.1 25.5 330 9-399 153-525 (527)
37 KOG0358 Chaperonin complex com 100.0 6.6E-50 1.4E-54 383.9 22.4 332 1-392 145-533 (534)
38 KOG0360 Chaperonin complex com 100.0 4.9E-49 1.1E-53 386.9 23.3 340 2-397 140-540 (545)
39 KOG0364 Chaperonin complex com 100.0 1.4E-47 3E-52 373.5 17.6 335 2-396 139-524 (527)
40 KOG0362 Chaperonin complex com 100.0 7.3E-46 1.6E-50 366.7 28.0 325 20-406 171-534 (537)
41 KOG0359 Chaperonin complex com 100.0 1.6E-46 3.5E-51 365.6 21.0 332 3-394 138-516 (520)
42 KOG0357 Chaperonin complex com 100.0 6.7E-46 1.5E-50 351.8 14.6 248 95-394 140-397 (400)
43 cd03333 chaperonin_like chaper 100.0 4.5E-30 9.7E-35 239.4 20.2 191 9-275 3-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 100.0 7.3E-29 1.6E-33 238.7 20.3 198 20-276 19-254 (261)
45 KOG0230 Phosphatidylinositol-4 99.3 3E-11 6.5E-16 134.0 14.3 206 22-286 335-578 (1598)
46 COG0459 GroL Chaperonin GroEL 97.9 1.7E-05 3.7E-10 83.6 6.7 87 102-204 262-355 (524)
47 TIGR02345 chap_CCT_eta T-compl 60.4 2.7 5.8E-05 44.8 -0.2 61 110-171 247-316 (522)
48 smart00574 POX domain associat 48.3 1.3E+02 0.0029 26.2 8.2 59 225-296 69-128 (140)
49 COG3962 Acetolactate synthase 45.0 19 0.00041 37.6 3.0 38 260-298 217-255 (617)
50 PRK12338 hypothetical protein; 42.4 3.6E+02 0.0079 26.9 13.2 130 103-264 175-308 (319)
51 KOG3954 Electron transfer flav 41.9 2.5E+02 0.0055 27.3 9.8 61 211-280 195-262 (336)
52 KOG1593 Asparaginase [Amino ac 40.2 40 0.00087 32.6 4.2 66 243-326 95-163 (349)
53 PRK13600 putative ribosomal pr 38.7 1.7E+02 0.0037 23.2 6.9 51 103-165 22-74 (84)
54 PF07818 HCNGP: HCNGP-like pro 35.3 56 0.0012 26.6 3.8 57 318-382 30-86 (96)
55 PRK13601 putative L7Ae-like ri 35.1 1.5E+02 0.0032 23.3 6.1 53 103-166 17-70 (82)
56 PRK13602 putative ribosomal pr 34.0 1.2E+02 0.0027 23.7 5.5 52 103-166 20-73 (82)
57 PRK06683 hypothetical protein; 33.9 1.2E+02 0.0026 23.8 5.4 53 103-166 20-73 (82)
58 PF07526 POX: Associated with 32.1 1.3E+02 0.0029 26.2 5.9 44 253-296 84-128 (140)
59 CHL00202 argB acetylglutamate 30.3 84 0.0018 30.6 4.9 50 235-285 18-68 (284)
60 PRK14736 atpC F0F1 ATP synthas 28.6 2.2E+02 0.0048 24.5 6.7 54 187-240 67-126 (133)
61 PLN02512 acetylglutamate kinas 28.6 1.3E+02 0.0028 29.7 5.9 48 235-283 42-90 (309)
62 TIGR01166 cbiO cobalt transpor 27.4 64 0.0014 28.9 3.3 40 81-120 143-187 (190)
63 COG0548 ArgB Acetylglutamate k 24.9 3.3E+02 0.0072 26.4 7.8 43 240-283 2-45 (265)
64 PF04864 Alliinase_C: Allinase 24.1 80 0.0017 31.9 3.4 39 251-289 41-81 (363)
65 cd03232 ABC_PDR_domain2 The pl 23.7 1.1E+02 0.0025 27.4 4.2 42 81-122 124-170 (192)
66 PF10805 DUF2730: Protein of u 23.4 1.2E+02 0.0026 25.0 3.9 37 207-243 46-82 (106)
67 cd03213 ABCG_EPDR ABCG transpo 22.9 1.2E+02 0.0025 27.5 4.1 43 82-124 128-175 (194)
68 PLN02825 amino-acid N-acetyltr 22.5 6E+02 0.013 27.2 9.8 47 235-283 12-59 (515)
69 PF01113 DapB_N: Dihydrodipico 22.5 1.6E+02 0.0034 24.7 4.6 41 87-129 70-110 (124)
70 COG2262 HflX GTPases [General 21.5 7.4E+02 0.016 25.7 9.8 55 204-262 158-212 (411)
71 PRK13929 rod-share determining 21.1 8E+02 0.017 24.2 12.6 24 145-168 107-130 (335)
72 PRK01018 50S ribosomal protein 21.1 3E+02 0.0065 22.2 5.8 52 103-164 25-77 (99)
73 PF06723 MreB_Mbl: MreB/Mbl pr 21.0 2.2E+02 0.0047 28.5 5.9 82 215-296 188-297 (326)
74 PRK13538 cytochrome c biogenes 20.9 1.1E+02 0.0023 27.9 3.4 42 81-122 145-191 (204)
75 PF01248 Ribosomal_L7Ae: Ribos 20.8 4.1E+02 0.009 20.7 6.5 52 103-165 24-77 (95)
76 TIGR03771 anch_rpt_ABC anchore 20.7 98 0.0021 28.6 3.2 41 81-121 129-174 (223)
77 cd03234 ABCG_White The White s 20.4 1.5E+02 0.0032 27.3 4.4 44 81-124 159-207 (226)
78 cd03216 ABC_Carb_Monos_I This 20.4 94 0.002 27.2 2.9 42 81-122 98-144 (163)
79 TIGR01101 V_ATP_synt_F vacuola 20.3 3.9E+02 0.0085 22.5 6.4 68 94-164 43-115 (115)
80 PRK10884 SH3 domain-containing 20.2 2.1E+02 0.0046 26.6 5.3 12 277-288 174-185 (206)
81 cd03262 ABC_HisP_GlnQ_permease 20.0 96 0.0021 28.2 3.0 41 81-121 151-196 (213)
No 1
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=9.9e-84 Score=680.15 Aligned_cols=412 Identities=93% Similarity=1.304 Sum_probs=395.1
Q ss_pred CccccCChhHHHHHHHhcCCchhHHHHHHHHHHHhccCCceeeecCCccccceeeeeceEEecccccCccccCcccCeee
Q 015120 1 MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVE 80 (413)
Q Consensus 1 ~a~pv~~~~L~~VA~ts~~~~~~la~lv~~Ai~~vg~~~~I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~ 80 (413)
+|+|++|.+|.+||+||+++++.|++|+++|+..+|.+|.|.++.|++++|++++++|++|+++|.||||+++.++|+++
T Consensus 189 ~s~~v~d~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~ 268 (600)
T PLN03167 189 MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVE 268 (600)
T ss_pred hcccCCHHHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEE
Confidence 46788755899999999999999999999999999988989888999999998899999999999999999999999999
Q ss_pred ecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHH
Q 015120 81 YENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAI 160 (413)
Q Consensus 81 ~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~ 160 (413)
++||+||++|++|++++++.++++++.+.++||||++++|++++|++|+.|+++|.++++|||+|+||+.++++|+|||+
T Consensus 269 l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~ 348 (600)
T PLN03167 269 YDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAI 348 (600)
T ss_pred EeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEeecCcCccccCCCCcccccceEEEEcCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcC
Q 015120 161 LTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSG 240 (413)
Q Consensus 161 ~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g 240 (413)
+|||++++++.+++++++++++||+|++|++.++.++++++.++++.+++|+.+++.+++++.++|++++|++||++|+|
T Consensus 349 ~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g 428 (600)
T PLN03167 349 LTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSG 428 (600)
T ss_pred hhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCC
Confidence 99999999988889999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred CeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcCccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHH
Q 015120 241 GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLK 320 (413)
Q Consensus 241 ~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~ 320 (413)
++++|+|||+|+.+++|+||+++|||+++|+|+++|+|||||++|++++.+|.+++.++.+++|+.++++|++||+.||+
T Consensus 429 ~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r 508 (600)
T PLN03167 429 GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLK 508 (600)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999999999999999988778899998889999999999999
Q ss_pred HHHHhcCCCchhhHHhhhccCCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCCCCCCC
Q 015120 321 LIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAM 400 (413)
Q Consensus 321 ~L~~NaG~d~~~i~~kl~~~~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~ 400 (413)
+||+|||+|+.+++.+|++.+++++|||+.+|+++||++.|||||+.||+++|+.|+++|++||+||++|+.+|.+++ +
T Consensus 509 ~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~~~-~ 587 (600)
T PLN03167 509 LIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEP-V 587 (600)
T ss_pred hhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-C
Confidence 999999999999999998655778999999999999999999999999999999999999999999999999876655 3
Q ss_pred CCCCCCCCCCCCC
Q 015120 401 PAGNPMDNSGYGY 413 (413)
Q Consensus 401 ~~~~~~~~~~~~~ 413 (413)
++.++++.++|||
T Consensus 588 ~~~~~~~~~~~~~ 600 (600)
T PLN03167 588 PAGNPMDNSGYGY 600 (600)
T ss_pred CCCCCCCCCCCCC
Confidence 5788899999998
No 2
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.2e-82 Score=667.26 Aligned_cols=406 Identities=59% Similarity=0.871 Sum_probs=381.6
Q ss_pred CccccCCh-hHHHHHHHhcCCchhHHHHHHHHHHHhccCCceeeecCCccccceeeeeceEEecccccCccccCcccCee
Q 015120 1 MSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAV 79 (413)
Q Consensus 1 ~a~pv~~~-~L~~VA~ts~~~~~~la~lv~~Ai~~vg~~~~I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~ 79 (413)
+|+|+++. +|.+||+||+++++.|++++++|+..++.++.|.++.+....|.+++++|++|+++|.+|+|++++++|++
T Consensus 133 ~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~ 212 (542)
T PRK00013 133 ISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEA 212 (542)
T ss_pred hccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeE
Confidence 57899877 99999999999999999999999999998887777655545555589999999999999999999999999
Q ss_pred eecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHH
Q 015120 80 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIA 159 (413)
Q Consensus 80 ~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la 159 (413)
+++||+||++|+.|++++++.++++++.+.|+||||++++|+++++++|+.|+++|+++|+|||+|+||+.++++|+|||
T Consensus 213 ~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia 292 (542)
T PRK00013 213 ELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIA 292 (542)
T ss_pred EEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeecCcCccccCCCCcccccceEEEEcCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhc
Q 015120 160 ILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLS 239 (413)
Q Consensus 160 ~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~ 239 (413)
++|||++++++.+++++++++++||+|+.|++++++++||++++++..+..|+++|+.+++++.++|++++|+||++||+
T Consensus 293 ~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~ 372 (542)
T PRK00013 293 ILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLA 372 (542)
T ss_pred HHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhc
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcCccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHH
Q 015120 240 GGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPL 319 (413)
Q Consensus 240 g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip 319 (413)
|+++||+|||+|+.+++|++|+++||++++++++++|+|||||++|+++|.+|+++ .+.++.+| +++++|++||+.||
T Consensus 373 g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~-~~i~~~a~Al~~ip 450 (542)
T PRK00013 373 GGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEAL-KGLNGDEA-TGINIVLRALEAPL 450 (542)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHh-cCCChHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988 66788888 69999999999999
Q ss_pred HHHHHhcCCCchhhHHhhhccCCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCCCCCC
Q 015120 320 KLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA 399 (413)
Q Consensus 320 ~~L~~NaG~d~~~i~~kl~~~~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~ 399 (413)
++||+|||+|+.+++++|++..++++|||+.+|+++||++.|||||+.||.++|+.|+++|++||+||++|+.+|.+.+.
T Consensus 451 ~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~ 530 (542)
T PRK00013 451 RQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKKAA 530 (542)
T ss_pred HHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 99999999999999999987546789999999999999999999999999999999999999999999999998866443
Q ss_pred -CC-CCCCCCC
Q 015120 400 -MP-AGNPMDN 408 (413)
Q Consensus 400 -~~-~~~~~~~ 408 (413)
|| ++|+|..
T Consensus 531 ~~~~~~~~~~~ 541 (542)
T PRK00013 531 APPMGGGGMGG 541 (542)
T ss_pred CCCCCCCCCCC
Confidence 33 5565543
No 3
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2e-82 Score=665.52 Aligned_cols=407 Identities=56% Similarity=0.843 Sum_probs=386.4
Q ss_pred CccccCCh-hHHHHHHHhcCCchhHHHHHHHHHHHhccCCceeeecCCccccceeeeeceEEecccccCccccCcccCee
Q 015120 1 MSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAV 79 (413)
Q Consensus 1 ~a~pv~~~-~L~~VA~ts~~~~~~la~lv~~Ai~~vg~~~~I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~ 79 (413)
+|+|+++. +|.+||+||++++++|++++++|+..++.++.+.++.|++++|++++++|++|+++|.+|+|+++.++|++
T Consensus 133 ~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~ 212 (542)
T PRK12849 133 LARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEA 212 (542)
T ss_pred hccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceE
Confidence 57888877 89999999999999999999999999998888888899999987789999999999999999999999999
Q ss_pred eecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHH
Q 015120 80 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIA 159 (413)
Q Consensus 80 ~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la 159 (413)
+++||+||++|+.|++++++.++++++.+.|+||||++++|+++++++|+.|+++|.++|+|||+|++++.++++|+|||
T Consensus 213 ~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia 292 (542)
T PRK12849 213 VLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIA 292 (542)
T ss_pred EeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeecCcCccccCCCCcccccceEEEEcCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhc
Q 015120 160 ILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLS 239 (413)
Q Consensus 160 ~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~ 239 (413)
.+|||++++.+.+++++++++++||+|+.|++++++++++++++++.++..|+++|++++++++++|++++|+||++||+
T Consensus 293 ~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~ 372 (542)
T PRK12849 293 ILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLA 372 (542)
T ss_pred HHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhc
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcCccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHH
Q 015120 240 GGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPL 319 (413)
Q Consensus 240 g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip 319 (413)
|+++||+|||+|+.+++|+||+++||++++++++++|+|||||++|+++|.+|.+++ +.++++| +++++|++||+.||
T Consensus 373 ~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~-~~~g~~~-~~i~~~a~Al~~ip 450 (542)
T PRK12849 373 GGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELA-GLNGDQA-AGVEIVRRALEAPL 450 (542)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhh-CCChHHH-HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 7888888 69999999999999
Q ss_pred HHHHHhcCCCchhhHHhhhccCCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCCCCCC
Q 015120 320 KLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA 399 (413)
Q Consensus 320 ~~L~~NaG~d~~~i~~kl~~~~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~ 399 (413)
++||+|||+|+.+++.+|++. .+++|||+.+|+++||++.|||||+.||.++|+.|+++|++|||||++|+.+|++..+
T Consensus 451 ~~La~NaG~d~~~vi~~L~~~-~~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~ 529 (542)
T PRK12849 451 RQIAENAGLDGSVVVAKVLEL-EDGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDP 529 (542)
T ss_pred HHHHHHCCCCHHHHHHHHHhh-CCCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccCCC
Confidence 999999999999999999876 4689999999999999999999999999999999999999999999999998865444
Q ss_pred CCCCCCCCCCC
Q 015120 400 MPAGNPMDNSG 410 (413)
Q Consensus 400 ~~~~~~~~~~~ 410 (413)
|.+.|++.-+|
T Consensus 530 ~~~~~~~~~~~ 540 (542)
T PRK12849 530 PGGMGGMGGMG 540 (542)
T ss_pred CCCCCCCCCCC
Confidence 44566665554
No 4
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.8e-82 Score=665.28 Aligned_cols=409 Identities=51% Similarity=0.825 Sum_probs=385.1
Q ss_pred CccccCCh-hHHHHHHHhcCCchhHHHHHHHHHHHhccCCceeeecCCccccceeeeeceEEecccccCccccCcccCee
Q 015120 1 MSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAV 79 (413)
Q Consensus 1 ~a~pv~~~-~L~~VA~ts~~~~~~la~lv~~Ai~~vg~~~~I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~ 79 (413)
+++|+++. +|.+||++|++.++.|++++++|+..++.++.|.+..|+++.+.+++++|+.|+++|.+|+|+++.++|++
T Consensus 134 ~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~ 213 (545)
T PRK12852 134 RAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTV 213 (545)
T ss_pred hcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceE
Confidence 47889877 89999999999999999999999999999898888888887656689999999999999999999999999
Q ss_pred eecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHH
Q 015120 80 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIA 159 (413)
Q Consensus 80 ~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la 159 (413)
+++||+||++|++|+++++++++++++.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||+.++++|+|||
T Consensus 214 ~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia 293 (545)
T PRK12852 214 ELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIA 293 (545)
T ss_pred EecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeecCcCccccCCCCcccccceEEEEcCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhc
Q 015120 160 ILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLS 239 (413)
Q Consensus 160 ~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~ 239 (413)
++|||++++++.+++++++++++||+|+.|+++++++++++++++++.+..|+++|+.+++++.++|++++|++||+||+
T Consensus 294 ~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~ 373 (545)
T PRK12852 294 ILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLA 373 (545)
T ss_pred HhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcCccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHH
Q 015120 240 GGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPL 319 (413)
Q Consensus 240 g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip 319 (413)
|+++||+|||+|+.+++|+||+++||+|++++++++|+|||||++|++++.+|.+++.. ++.+| +++++|++||+.||
T Consensus 374 ~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~q-~~i~~~a~AL~~ip 451 (545)
T PRK12852 374 GGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINND-NADVQ-AGINIVLKALEAPI 451 (545)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcC-CcHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998865 67777 69999999999999
Q ss_pred HHHHHhcCCCchhhHHhhhccCCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCCCCCC
Q 015120 320 KLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA 399 (413)
Q Consensus 320 ~~L~~NaG~d~~~i~~kl~~~~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~ 399 (413)
++||+|||+|+.+++++|++..++++|||+.+|+++||++.|||||+.||.++|+.|+|+|++|||||++|+.+|+++..
T Consensus 452 ~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~ 531 (545)
T PRK12852 452 RQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKKDAA 531 (545)
T ss_pred HHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCCC
Confidence 99999999999999999987557789999999999999999999999999999999999999999999999998866433
Q ss_pred --CCCCCCCCCCCC
Q 015120 400 --MPAGNPMDNSGY 411 (413)
Q Consensus 400 --~~~~~~~~~~~~ 411 (413)
|++.+.+..+||
T Consensus 532 ~~~~~~~~~~~~~~ 545 (545)
T PRK12852 532 PAMPAGGGMGGMGF 545 (545)
T ss_pred CCCCCCCCCCCCCC
Confidence 334445555554
No 5
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=9.9e-82 Score=661.08 Aligned_cols=408 Identities=53% Similarity=0.822 Sum_probs=383.0
Q ss_pred CccccCCh-hHHHHHHHhcCCchhHHHHHHHHHHHhccCCceeeecCCccccceeeeeceEEecccccCccccCcccCee
Q 015120 1 MSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAV 79 (413)
Q Consensus 1 ~a~pv~~~-~L~~VA~ts~~~~~~la~lv~~Ai~~vg~~~~I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~ 79 (413)
+++|+++. +|.+||++|+++++.|++++++|+..++.+|.|.++.+....+++++++|++|+++|.+|+|+++.+++++
T Consensus 134 ~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~ 213 (544)
T PRK12850 134 IAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRA 213 (544)
T ss_pred hccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeE
Confidence 47888877 89999999999999999999999999998887777666666677799999999999999999999999999
Q ss_pred eecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHH
Q 015120 80 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIA 159 (413)
Q Consensus 80 ~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la 159 (413)
+++||+||++|+++++.+++.++++++.+.|+||||++++|+++++++|+.|+++|.++++|||+|+||+.++++|+|||
T Consensus 214 ~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia 293 (544)
T PRK12850 214 ELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIA 293 (544)
T ss_pred EEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeecCcCccccCCCCcccccceEEEEcCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhc
Q 015120 160 ILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLS 239 (413)
Q Consensus 160 ~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~ 239 (413)
++|||++++++.+++++++++++||+|+.|++++++++|+++|+++.+++.|+++++++++++.++|++++|+||++||+
T Consensus 294 ~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~ 373 (544)
T PRK12850 294 VLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLA 373 (544)
T ss_pred HHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcCccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHH
Q 015120 240 GGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPL 319 (413)
Q Consensus 240 g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip 319 (413)
|+++||+|||+|+.+++|++|+++|||+++++++++|+|||||++|++++..|+++ .+.++++| +++++|++||+.||
T Consensus 374 ~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~-~~i~~~a~Al~~ip 451 (544)
T PRK12850 374 GGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGL-KGANADET-AGIDIVRRALEEPL 451 (544)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHhc-cCCChHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988 56778887 69999999999999
Q ss_pred HHHHHhcCCCchhhHHhhhccCCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCCCCCC
Q 015120 320 KLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA 399 (413)
Q Consensus 320 ~~L~~NaG~d~~~i~~kl~~~~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~ 399 (413)
++||+|||+|+.+++.+|++. ..++|||+.+|+++||++.|||||+.||.++|++|+++|++|||||++|+.+|...|+
T Consensus 452 ~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~ 530 (544)
T PRK12850 452 RQIATNAGFEGSVVVGKVAEL-PGNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAAA 530 (544)
T ss_pred HHHHHhcCCCHHHHHHHHHhh-CCCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCCCC
Confidence 999999999999999999875 4578999999999999999999999999999999999999999999999998876666
Q ss_pred CC--CCCCCCCCCC
Q 015120 400 MP--AGNPMDNSGY 411 (413)
Q Consensus 400 ~~--~~~~~~~~~~ 411 (413)
|. |+.+|..|||
T Consensus 531 ~~~~~~~~~~~~~~ 544 (544)
T PRK12850 531 AAAGPGPGMGGMGY 544 (544)
T ss_pred CCCCCCCCCCCCCC
Confidence 44 2334555554
No 6
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.1e-81 Score=658.29 Aligned_cols=404 Identities=55% Similarity=0.847 Sum_probs=379.9
Q ss_pred CccccCCh-hHHHHHHHhcCCchhHHHHHHHHHHHhccCCceeeecCCccccceeeeeceEEecccccCccccCcccCee
Q 015120 1 MSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAV 79 (413)
Q Consensus 1 ~a~pv~~~-~L~~VA~ts~~~~~~la~lv~~Ai~~vg~~~~I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~ 79 (413)
+++|+++. +|.+||++|+++++.|++++++|+..++.+|.|.++.+....+++++++|++|+++|.+|+|+++.++|++
T Consensus 134 ~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~ 213 (541)
T PRK12851 134 NARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEA 213 (541)
T ss_pred hccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeE
Confidence 57888877 89999999999999999999999999998887776554444555589999999999999999999999999
Q ss_pred eecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHH
Q 015120 80 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIA 159 (413)
Q Consensus 80 ~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la 159 (413)
+++||+||++|+++++.+++.++++++.+.|+||||++++|+++++++|+.|+++|.++++|||+|+||+.++++|+|||
T Consensus 214 ~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia 293 (541)
T PRK12851 214 ELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIA 293 (541)
T ss_pred EecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeecCcCccccCCCCcccccceEEEEcCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhc
Q 015120 160 ILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLS 239 (413)
Q Consensus 160 ~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~ 239 (413)
++|||++++.+.+++++++++++||+|+.|++++++|+|+++++++.++..|+++|+++++++.+++++++|++|++||+
T Consensus 294 ~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~ 373 (541)
T PRK12851 294 ILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLA 373 (541)
T ss_pred HHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcCccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHH
Q 015120 240 GGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPL 319 (413)
Q Consensus 240 g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip 319 (413)
|+++||+|||+|+.+++|+||+++|||+++++++++|+|||||++|+++|.+|++++.. ++.+| +++++|++||+.||
T Consensus 374 g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~~-~~~~~~a~AL~~ip 451 (541)
T PRK12851 374 GGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLETA-NGDQR-TGVEIVRRALEAPV 451 (541)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHhcC-CcHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998865 77777 69999999999999
Q ss_pred HHHHHhcCCCchhhHHhhhccCCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCCCCCC
Q 015120 320 KLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA 399 (413)
Q Consensus 320 ~~L~~NaG~d~~~i~~kl~~~~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~ 399 (413)
++||+|||+|+.+++++|++. ..++|||+.+|+++||++.|||||+.||.++|+.|+|+|++|||||++|+.+|.+.|+
T Consensus 452 ~~La~NaG~d~~~vl~~l~~~-~~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~ 530 (541)
T PRK12851 452 RQIAENAGAEGSVVVGKLREK-PGGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEPA 530 (541)
T ss_pred HHHHHhcCCCHHHHHHHHHhh-CCCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCCC
Confidence 999999999999999999876 3579999999999999999999999999999999999999999999999999876655
Q ss_pred CC--CCCCCC
Q 015120 400 MP--AGNPMD 407 (413)
Q Consensus 400 ~~--~~~~~~ 407 (413)
|+ |+|+|+
T Consensus 531 ~~~~~~~~~~ 540 (541)
T PRK12851 531 PPAPPGGGMD 540 (541)
T ss_pred CCCCCCcccC
Confidence 43 566654
No 7
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=5.1e-81 Score=655.42 Aligned_cols=396 Identities=50% Similarity=0.825 Sum_probs=377.7
Q ss_pred CccccCCh-hHHHHHHHhcCCchhHHHHHHHHHHHhccCCceeeecCCccccceeeeeceEEecccccCccccCcccCee
Q 015120 1 MSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAV 79 (413)
Q Consensus 1 ~a~pv~~~-~L~~VA~ts~~~~~~la~lv~~Ai~~vg~~~~I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~ 79 (413)
+|+|+++. +|.+||++|+++++++++++++|+..+|.+|.|.++.+++++|++++++|++|+++|.||||+++++.++.
T Consensus 134 ~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~ 213 (546)
T PRK14104 134 NSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRV 213 (546)
T ss_pred hcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCce
Confidence 57899877 89999999999999999999999999999899988888888767799999999999999999999999999
Q ss_pred eecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHH
Q 015120 80 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIA 159 (413)
Q Consensus 80 ~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la 159 (413)
++++|+||++|.+++++++++++++.+.+.|+||||++++|+++++++|..|++++.++|+|||+|+||+.++++|+|||
T Consensus 214 ~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia 293 (546)
T PRK14104 214 EMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIA 293 (546)
T ss_pred eeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeecCcCccccCCCCcccccceEEEEcCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhc
Q 015120 160 ILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLS 239 (413)
Q Consensus 160 ~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~ 239 (413)
++|||++++++.+++++++++++||+|+.+++++++++++++|++++.+..|+++|+.++++++++|++++|+||+++|+
T Consensus 294 ~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~ 373 (546)
T PRK14104 294 ILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLA 373 (546)
T ss_pred HHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcCccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHH
Q 015120 240 GGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPL 319 (413)
Q Consensus 240 g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip 319 (413)
|+++||+|||+|+.+++|++|+++||+|++++++++|+|||||++|++++..|+++.. ..+.+| +++++|++||+.||
T Consensus 374 ~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~-~~~~~~-~~i~~~a~Al~~ip 451 (546)
T PRK14104 374 GGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGIKT-KNDDQK-TGVEIVRKALSAPA 451 (546)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHHHHHHhhc-CChHHH-HHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999999999999998743 456666 79999999999999
Q ss_pred HHHHHhcCCCchhhHHhhhccCCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCCCCC
Q 015120 320 KLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP 398 (413)
Q Consensus 320 ~~L~~NaG~d~~~i~~kl~~~~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~ 398 (413)
++||+|||+|+.+++.+|++.+++++|||+.+|+++||++.|||||+.||.++|++|+++|++|||||++|...|++..
T Consensus 452 ~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~~~ 530 (546)
T PRK14104 452 RQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGG 530 (546)
T ss_pred HHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCC
Confidence 9999999999999999998755678999999999999999999999999999999999999999999999988886543
No 8
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=4.4e-81 Score=658.07 Aligned_cols=395 Identities=51% Similarity=0.830 Sum_probs=378.7
Q ss_pred CccccCCh-hHHHHHHHhcCCchhHHHHHHHHHHHhccCCceeeecCCccccceeeeeceEEecccccCccccCcccCee
Q 015120 1 MSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAV 79 (413)
Q Consensus 1 ~a~pv~~~-~L~~VA~ts~~~~~~la~lv~~Ai~~vg~~~~I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~ 79 (413)
+|+|+++. +|.+||+||++++++|++++++|+..++.+|.|.++.|++++|++++++|++|+++|.+|+|+++.++|++
T Consensus 145 ~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~ 224 (555)
T PTZ00114 145 QSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKV 224 (555)
T ss_pred hccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeE
Confidence 57899877 89999999999999999999999999998898998999999999889999999999999999999999999
Q ss_pred eecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHH
Q 015120 80 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIA 159 (413)
Q Consensus 80 ~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la 159 (413)
+++||+||++|++|.+++++.++++++.+.|+||||++++|+++++++|..|+++|.++|+|||+|++|+.++++|+|||
T Consensus 225 ~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la 304 (555)
T PTZ00114 225 ELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIA 304 (555)
T ss_pred EecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeecC-cCccccCCCCcccccceEEEEcCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 015120 160 ILTGGTVIRDE-VGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKL 238 (413)
Q Consensus 160 ~~tG~~~~~~~-~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l 238 (413)
++|||+++++. .++.++++++++||+|+.|+++++++++++++++++.|++|++.|+.++++..+++++++|++|++||
T Consensus 305 ~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l 384 (555)
T PTZ00114 305 VLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKL 384 (555)
T ss_pred HHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 99999999976 67777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcCccccCchHHHHHHHHHHHHhc--cCCChHHHHHHHHHHHHHh
Q 015120 239 SGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKE--TLDNDEEKVGADIVKRALC 316 (413)
Q Consensus 239 ~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~gvVpGGGa~e~~ls~~L~~~~~--~~~~~eq~~~i~~~a~AL~ 316 (413)
+|+++||+|||+|+.+++|++|+++||++++++++++|+|||||++|+++|.+|++++. +.++++| +++++|++||+
T Consensus 385 ~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~-~~i~~~a~AL~ 463 (555)
T PTZ00114 385 SGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQR-TGVKIVRNALR 463 (555)
T ss_pred CCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998875 4677887 69999999999
Q ss_pred HHHHHHHHhcCCCchhhHHhhhccCCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCCC
Q 015120 317 YPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEP 396 (413)
Q Consensus 317 ~ip~~L~~NaG~d~~~i~~kl~~~~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~ 396 (413)
.||++||+|||+|+.+++++|++.+++++|||+.+|+++||++.|||||+.||.++|+.|+++|++||+||++|+..|.+
T Consensus 464 ~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~ 543 (555)
T PTZ00114 464 LPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKE 543 (555)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCcc
Confidence 99999999999999999999987557789999999999999999999999999999999999999999999999997754
No 9
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=7.4e-80 Score=645.20 Aligned_cols=391 Identities=60% Similarity=0.887 Sum_probs=374.7
Q ss_pred CccccCCh-hHHHHHHHhcCCchhHHHHHHHHHHHhccCCceeeecCCccccceeeeeceEEecccccCccccCcccCee
Q 015120 1 MSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAV 79 (413)
Q Consensus 1 ~a~pv~~~-~L~~VA~ts~~~~~~la~lv~~Ai~~vg~~~~I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~ 79 (413)
+++|+++. +|.+||+||++++++|++++++|+..++.++.|.++.|++.+|++++++|++|+++|.+|+|.++.+++++
T Consensus 132 ~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~ 211 (524)
T TIGR02348 132 LSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEV 211 (524)
T ss_pred hccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeE
Confidence 57888877 89999999999999999999999999998888888888888777799999999999999999999999999
Q ss_pred eecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHH
Q 015120 80 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIA 159 (413)
Q Consensus 80 ~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la 159 (413)
.++||+||++|++|++++++.++++++.+.|+||||++++|+++++++|+.|+++|+++++|||+|++|+.++++|+|||
T Consensus 212 ~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia 291 (524)
T TIGR02348 212 ELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIA 291 (524)
T ss_pred EeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeecCcCccccCCCCcccccceEEEEcCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhc
Q 015120 160 ILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLS 239 (413)
Q Consensus 160 ~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~ 239 (413)
++|||++++++.+++++++++++||+|+.|++++++++|++++++++.+..|++.|+++++++.++|++++|+||++||+
T Consensus 292 ~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~ 371 (524)
T TIGR02348 292 ILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLA 371 (524)
T ss_pred HHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcCccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHH
Q 015120 240 GGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPL 319 (413)
Q Consensus 240 g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip 319 (413)
|+++||+|||+|+.+++|++|+++||++++|+++++|+|||||++|+++|.+|++ ..+.++.+| +++++|++||+.||
T Consensus 372 ~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~~L~~-~~~~~~~~~-~~~~~~a~AL~~ip 449 (524)
T TIGR02348 372 GGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAAALEG-LKGDNEDEA-IGIDIVKRALEAPL 449 (524)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHH-hccCChHHH-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 666778887 69999999999999
Q ss_pred HHHHHhcCCCchhhHHhhhccCCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccC
Q 015120 320 KLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIK 394 (413)
Q Consensus 320 ~~L~~NaG~d~~~i~~kl~~~~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~ 394 (413)
++||+|||+|+.+++++|++. +.++|||+.+|+++||++.|||||+.||.++|+.|+++|++|||||++|...|
T Consensus 450 ~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~~ 523 (524)
T TIGR02348 450 RQIAENAGKDGAVVAEKVKES-KGNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKP 523 (524)
T ss_pred HHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Confidence 999999999999999999876 33589999999999999999999999999999999999999999999997643
No 10
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=9.6e-80 Score=645.01 Aligned_cols=392 Identities=54% Similarity=0.861 Sum_probs=373.3
Q ss_pred CccccCCh-hHHHHHHHhcCCchhHHHHHHHHHHHhccCCceeeecCCccccceeeeeceEEecccccCccccCcccCee
Q 015120 1 MSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAV 79 (413)
Q Consensus 1 ~a~pv~~~-~L~~VA~ts~~~~~~la~lv~~Ai~~vg~~~~I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~ 79 (413)
+|+|++|. +|.+||+||+++++.|++++++|+..++.+|.|.++.|+..++.+++++|++|+++|.+|+|++++++|+.
T Consensus 133 ~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~ 212 (529)
T CHL00093 133 YARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEV 212 (529)
T ss_pred hCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceE
Confidence 57899877 99999999999999999999999999998888887677666677789999999999999999999999999
Q ss_pred eecCeeEEEecccCCCH-HHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHH
Q 015120 80 EYENCKLLLVDKKITNA-RDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDI 158 (413)
Q Consensus 80 ~~~~~~Ili~d~~i~~~-~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~l 158 (413)
+++||+||++|+++... .+++++++++.+.++|+||++++|+++++++|++|+.+|+++|+|||+|++|+.++++|+||
T Consensus 213 ~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~i 292 (529)
T CHL00093 213 VQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDI 292 (529)
T ss_pred EecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHH
Confidence 99999999999999987 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEeecCcCccccCCCCcccccceEEEEcCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 015120 159 AILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKL 238 (413)
Q Consensus 159 a~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l 238 (413)
|++|||++++++.|.+++++++++||+|+.|++++++++|++ .++++.+..|++.++++++.++++|++++|+||+++|
T Consensus 293 a~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l 371 (529)
T CHL00093 293 AILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKL 371 (529)
T ss_pred HHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHh
Confidence 999999999998888999999999999999999999999998 6678999999999999999999999999999999999
Q ss_pred cCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcCccccCchHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHhH
Q 015120 239 SGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKE-TLDNDEEKVGADIVKRALCY 317 (413)
Q Consensus 239 ~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~gvVpGGGa~e~~ls~~L~~~~~-~~~~~eq~~~i~~~a~AL~~ 317 (413)
+|+++||+|||+|+.+++|+||+++||++++|+++++|+|||||++|+++|.+|++++. +.++.+| +++++|++||+.
T Consensus 372 ~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~-~~i~~~a~AL~~ 450 (529)
T CHL00093 372 SGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDEL-IGALIVARAILA 450 (529)
T ss_pred cCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876 6788888 699999999999
Q ss_pred HHHHHHHhcCCCchhhHHhhhccCCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCC
Q 015120 318 PLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE 395 (413)
Q Consensus 318 ip~~L~~NaG~d~~~i~~kl~~~~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~ 395 (413)
||++||+|||+|+.++++++++. +.++|||+.+|+++||++.|||||+.||.++|+.|+|+|++|||||++|+.+|+
T Consensus 451 ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 527 (529)
T CHL00093 451 PLKRIAENAGKNGSVIIEKVQEQ-DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKKE 527 (529)
T ss_pred HHHHHHHhcCCCHHHHHHHHHcc-CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999875 568999999999999999999999999999999999999999999999998763
No 11
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1e-79 Score=643.26 Aligned_cols=388 Identities=61% Similarity=0.917 Sum_probs=374.2
Q ss_pred CccccCCh-hHHHHHHHhcCCchhHHHHHHHHHHHhccCCceeeecCCccccceeeeeceEEecccccCccccCcccCee
Q 015120 1 MSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAV 79 (413)
Q Consensus 1 ~a~pv~~~-~L~~VA~ts~~~~~~la~lv~~Ai~~vg~~~~I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~ 79 (413)
+++|+++. +|.+||+||+++++.|++++++|+..++.++.|.++.|+++.|++++++|++|+++|.+|+|.+++++|++
T Consensus 131 ~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~ 210 (520)
T cd03344 131 LSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEV 210 (520)
T ss_pred hccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeE
Confidence 57899877 99999999999999999999999999998888888899999997789999999999999999998888999
Q ss_pred eecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHH
Q 015120 80 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIA 159 (413)
Q Consensus 80 ~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la 159 (413)
+++||+||++|+++++++++.++++++.+.|+||||++++|+++++++|..|+++|.++++|||+|++|+.++++|+|||
T Consensus 211 ~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la 290 (520)
T cd03344 211 ELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIA 290 (520)
T ss_pred EeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHhCCeEeecCcCccccCCCCcccccceEEEEcCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhc
Q 015120 160 ILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLS 239 (413)
Q Consensus 160 ~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~ 239 (413)
.+|||++++++++++++++++++||+|+.|++++++++|+++++++.+++.|++.|+++++++.++|++++|+||++||+
T Consensus 291 ~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~ 370 (520)
T cd03344 291 ILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLS 370 (520)
T ss_pred HHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcCccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHH
Q 015120 240 GGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPL 319 (413)
Q Consensus 240 g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip 319 (413)
|++|||+|||+|+.+++|++|+++||++++++++++|+|||||++|+++|++|++++. .++++| +++++|++||+.||
T Consensus 371 ~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~-~~~~~~-~~~~~~a~Al~~ip 448 (520)
T cd03344 371 GGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKLKA-LNGDEK-LGIEIVRRALEAPL 448 (520)
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhcc-CChHHH-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987 788888 69999999999999
Q ss_pred HHHHHhcCCCchhhHHhhhccCCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhh
Q 015120 320 KLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV 391 (413)
Q Consensus 320 ~~L~~NaG~d~~~i~~kl~~~~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~ 391 (413)
++||+|||+|+.+++++|++... ++|||+.+|+++||++.|||||+.||.++|+.|+++|++||+||.+|.
T Consensus 449 ~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 449 RQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred HHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 99999999999999999987644 899999999999999999999999999999999999999999999885
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-75 Score=579.19 Aligned_cols=393 Identities=55% Similarity=0.845 Sum_probs=382.6
Q ss_pred CccccCCh-hHHHHHHHhcCCchhHHHHHHHHHHHhccCCceeeecCCccccceeeeeceEEecccccCccccCcccCee
Q 015120 1 MSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAV 79 (413)
Q Consensus 1 ~a~pv~~~-~L~~VA~ts~~~~~~la~lv~~Ai~~vg~~~~I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~ 79 (413)
||+||+++ ++.+||++|+++|.+.++++.+|+.++|++|+|+++.|.++.|++++++||.|++||++|||+++++.++.
T Consensus 147 ~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~ 226 (550)
T KOG0356|consen 147 MSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKV 226 (550)
T ss_pred hCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhh
Confidence 68999988 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHH
Q 015120 80 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIA 159 (413)
Q Consensus 80 ~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la 159 (413)
++++|++|+++.+|++++++.|.+|...+..+||||++++|+.++|.+|++|++++.++++|||+||||+.++..|.||+
T Consensus 227 e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Dia 306 (550)
T KOG0356|consen 227 EFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIA 306 (550)
T ss_pred hhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeecCcC-ccccCCCCcccccceEEEEcCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 015120 160 ILTGGTVIRDEVG-LALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKL 238 (413)
Q Consensus 160 ~~tG~~~~~~~~~-~~l~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l 238 (413)
.+||++++.++.+ +++++.+.++||+|+++.+++++++++.+.++++++..||++++..++...++|+++++++|+++|
T Consensus 307 i~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~l 386 (550)
T KOG0356|consen 307 ILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKL 386 (550)
T ss_pred HHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHh
Confidence 9999999999988 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcCccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHH
Q 015120 239 SGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYP 318 (413)
Q Consensus 239 ~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~i 318 (413)
+|++++|.+||.|+.|++|++++++||||++++|+++|+|||||+++++|+..|.+... ..+.+++.|++++.+||..|
T Consensus 387 s~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~-~~~~~~k~G~eiv~~Al~~P 465 (550)
T KOG0356|consen 387 SGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKA-TNNFDQKVGVEIVKKALRLP 465 (550)
T ss_pred cCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhccc-ccchHhhhhHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999998876 56777778999999999999
Q ss_pred HHHHHHhcCCCchhhHHhhhccCCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCCCC
Q 015120 319 LKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE 397 (413)
Q Consensus 319 p~~L~~NaG~d~~~i~~kl~~~~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~ 397 (413)
.++|++|||.|+..++.|++. ..+|||..+|+++||++.||+||+.|.+++|..|..+|+++++++++|...|++.
T Consensus 466 ~~~IakNAGvdg~~vv~Kv~~---~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 466 AQTIAKNAGVDGSVVVEKVLN---DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred HHHHHHhcCCchHHHHHHHHh---hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccccc
Confidence 999999999999999999983 3899999999999999999999999999999999999999999999999999876
No 13
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.6e-63 Score=519.51 Aligned_cols=332 Identities=24% Similarity=0.372 Sum_probs=301.5
Q ss_pred CccccC--Ch-hHHHHHHHhcCCc------hhHHHHHHHHHHHhccCCc---------eee--ecCCccccceeeeeceE
Q 015120 1 MSKEVE--DS-ELADVAAVSAGNN------YEVGNMIAEAMSKVGRKGV---------VTL--EEGKSAENMLYVVEGMQ 60 (413)
Q Consensus 1 ~a~pv~--~~-~L~~VA~ts~~~~------~~la~lv~~Ai~~vg~~~~---------I~~--~~g~s~~ds~~~i~G~~ 60 (413)
+++|++ +. .|.+||+||.+.+ +.|++++++|+.+++.++. |.+ ..|++++|+ ++++|++
T Consensus 134 ~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~v 212 (517)
T cd03343 134 IAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDT-ELIRGIV 212 (517)
T ss_pred hhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHc-ceeeeEE
Confidence 467886 56 8999999998865 8999999999999986532 444 789999998 6999999
Q ss_pred EecccccCccccCcccCeeeecCeeEEEeccc-------------CCCHHHHHHHHH-----------HHHhcCCCEEEE
Q 015120 61 FDRGYISPYFVTDSEKMAVEYENCKLLLVDKK-------------ITNARDLINVLE-----------DAIRGAYPILII 116 (413)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~-------------i~~~~~~~~~le-----------~i~~~~~~lvI~ 116 (413)
|+++|.+|+ |++.++||+|++++++ +++++++.++++ ++++.|+||||+
T Consensus 213 ~~~~~~~~~-------m~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~ 285 (517)
T cd03343 213 IDKEVVHPG-------MPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFC 285 (517)
T ss_pred EeccCCCCC-------CccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 999999987 5788999999999998 588888887644 888999999999
Q ss_pred eccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEEEc---C
Q 015120 117 AEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---K 193 (413)
Q Consensus 117 ~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~---~ 193 (413)
+++|++.++++|. + .++.+|+ +.++++|+|||++|||++++ ++++++++.||+|+.|++. +
T Consensus 286 ~~~I~~~al~~l~--~----~gI~~v~-----~v~~~~l~~Ia~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~ 349 (517)
T cd03343 286 QKGIDDLAQHYLA--K----AGILAVR-----RVKKSDMEKLARATGAKIVT-----NIDDLTPEDLGEAELVEERKVGD 349 (517)
T ss_pred CCCccHHHHHHHh--H----CCcEEEE-----eCCHHHHHHHHHHhCCEEec-----chhhCChhhCCccceEEEEEECC
Confidence 9999999999974 3 4567888 55899999999999999999 8899999999999999964 8
Q ss_pred CeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhh
Q 015120 194 DTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAV 273 (413)
Q Consensus 194 ~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al 273 (413)
++|++|++|+++ ..+||+|||+|+.+++|.+|+++|||+++++++
T Consensus 350 ~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~ 394 (517)
T cd03343 350 DKMVFVEGCKNP-----------------------------------KAVTILLRGGTEHVVDELERALEDALRVVADAL 394 (517)
T ss_pred eEEEEEEcCCCC-----------------------------------ceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999988865 588999999999999999999999999999999
Q ss_pred hcC-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhc---cCCCceeeec
Q 015120 274 EEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLS---SDNHKYGYNA 349 (413)
Q Consensus 274 ~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~---~~~~~~G~d~ 349 (413)
++| +|||||++||++|.+|++++.+.++.+| +++++|++||+.||++||+|||+|+.+++.+|++ .++.++|||+
T Consensus 395 ~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~-~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~ 473 (517)
T cd03343 395 EDGKVVAGGGAVEIELAKRLREYARSVGGREQ-LAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDV 473 (517)
T ss_pred hCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeec
Confidence 999 9999999999999999999877888888 6999999999999999999999999999999984 3467899999
Q ss_pred CCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhc
Q 015120 350 ATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE 392 (413)
Q Consensus 350 ~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~ 392 (413)
.+|+++||++.|||||+.||+++|+.|+|+|++|||||++|++
T Consensus 474 ~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 474 YTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred CCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 9999999999999999999999999999999999999999975
No 14
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-63 Score=517.24 Aligned_cols=328 Identities=22% Similarity=0.318 Sum_probs=292.7
Q ss_pred CccccC---Ch-hHHHHHHHhcCCc------hhHHHHHHHHHHHhccCC-c-------eeeecCCccccceeeeeceEEe
Q 015120 1 MSKEVE---DS-ELADVAAVSAGNN------YEVGNMIAEAMSKVGRKG-V-------VTLEEGKSAENMLYVVEGMQFD 62 (413)
Q Consensus 1 ~a~pv~---~~-~L~~VA~ts~~~~------~~la~lv~~Ai~~vg~~~-~-------I~~~~g~s~~ds~~~i~G~~~~ 62 (413)
+++|++ +. .|.+||++|++.+ +.|++++++|+..++.++ . |.+..|+++.|+ ++++|++|+
T Consensus 131 ~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds-~~i~G~~~~ 209 (484)
T cd03342 131 FKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDT-KLIRGLVLD 209 (484)
T ss_pred hcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhc-eEEeeEEEe
Confidence 467776 66 8999999998865 899999999999998765 1 333688899998 799999999
Q ss_pred cccccCccccCcccCeeeecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEe
Q 015120 63 RGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAAL 142 (413)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av 142 (413)
++|.+|+ |+++++||+|+++++++...+.-.. ...-.+||||+++|++.++++|..| +|+||
T Consensus 210 ~~~~~~~-------m~~~~~n~~Ill~~~~le~~~~~~~-----~~~~~~lvi~~~~I~~~al~~l~~~------~I~av 271 (484)
T cd03342 210 HGARHPD-------MPKRVENAYILTCNVSLEYEKTEVN-----SGFFYSVVINQKGIDPPSLDMLAKE------GILAL 271 (484)
T ss_pred cCCCCCC-------CCccccCceEEEEeCCCCCCccccC-----cEEEEEEEEeCCCccHHHHHHHHHC------CCeEE
Confidence 9999997 5888999999999999876543111 0112469999999999999997643 58999
Q ss_pred eCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEE---EEcCCeEEEEcCCCChhhHHHHHHHHHHHH
Q 015120 143 KAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKV---VLTKDTTTIVGDGSTQDAVSKRVAQIRTLI 219 (413)
Q Consensus 143 ~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v---~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l 219 (413)
++ .++++|+|||++|||++++ +++++++++||+|+.| ++++++|+|+++|+++
T Consensus 272 ~~-----~~~~~l~~ia~~tGa~ii~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-------------- 327 (484)
T cd03342 272 RR-----AKRRNMERLTLACGGVAMN-----SVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP-------------- 327 (484)
T ss_pred Ee-----CCHHHHHHHHHHhCCEEec-----ccccCChhhCcccceEEEEEECCeEEEEEECCCCC--------------
Confidence 94 5899999999999999999 8999999999999999 4788899999998865
Q ss_pred HhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC-ccccCchHHHHHHHHHHHHhcc
Q 015120 220 ENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKET 298 (413)
Q Consensus 220 ~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vVpGGGa~e~~ls~~L~~~~~~ 298 (413)
+++||+|||+|+.+++|.||+++|||+++++++++| +||||||+|++++.+|++++.+
T Consensus 328 ---------------------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~ 386 (484)
T cd03342 328 ---------------------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKS 386 (484)
T ss_pred ---------------------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhc
Confidence 699999999999999999999999999999999999 9999999999999999999887
Q ss_pred CCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc---CCCceeeecCCCcccccccCCccccchhHHHHHHH
Q 015120 299 LDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEH 375 (413)
Q Consensus 299 ~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~---~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~ 375 (413)
.++++| +++++|++||+.||++||+|||+|+.+++.+|++. +++++|||+.+|+++||++.|||||+.||+++|+.
T Consensus 387 ~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~ 465 (484)
T cd03342 387 VKGKAK-LGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHS 465 (484)
T ss_pred CCCHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHH
Confidence 888888 69999999999999999999999999999999853 46679999999999999999999999999999999
Q ss_pred HHHHHHHHhchhHHhhcc
Q 015120 376 ASSVAKTFLMSDCVVVEI 393 (413)
Q Consensus 376 A~e~a~~iL~id~iI~~~ 393 (413)
|+|+|++|||||++|+++
T Consensus 466 A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 466 ATVIASQLLLVDEIIRAG 483 (484)
T ss_pred HHHHHHHHhhhhHhhhcC
Confidence 999999999999999764
No 15
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.6e-62 Score=515.27 Aligned_cols=332 Identities=24% Similarity=0.374 Sum_probs=300.5
Q ss_pred CccccCC--h-hHHHHHHHhcCCc-------hhHHHHHHHHHHHhcc---CCc---------eeeecCCccccceeeeec
Q 015120 1 MSKEVED--S-ELADVAAVSAGNN-------YEVGNMIAEAMSKVGR---KGV---------VTLEEGKSAENMLYVVEG 58 (413)
Q Consensus 1 ~a~pv~~--~-~L~~VA~ts~~~~-------~~la~lv~~Ai~~vg~---~~~---------I~~~~g~s~~ds~~~i~G 58 (413)
+++|+++ . .|.+||+||.+.+ +.|++++++|+..++. +|. |.+..|++++|+ ++++|
T Consensus 135 ~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds-~lv~G 213 (519)
T TIGR02339 135 IATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDT-ELVEG 213 (519)
T ss_pred hccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcc-eeEee
Confidence 4677763 5 8999999998754 8899999999999984 453 334789999998 69999
Q ss_pred eEEecccccCccccCcccCeeeecCeeEEEeccc-------------CCCHHHHHHHHH-----------HHHhcCCCEE
Q 015120 59 MQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKK-------------ITNARDLINVLE-----------DAIRGAYPIL 114 (413)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~-------------i~~~~~~~~~le-----------~i~~~~~~lv 114 (413)
++|+++|.+|. |+++++||+|++++++ +++++++.++++ ++++.|++||
T Consensus 214 ~vi~~~~~~~~-------m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lv 286 (519)
T TIGR02339 214 IVVDKEPVHPG-------MPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVV 286 (519)
T ss_pred EEEecCCCCCC-------CccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 99999999985 8899999999999998 788999988876 8999999999
Q ss_pred EEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEEEc--
Q 015120 115 IIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT-- 192 (413)
Q Consensus 115 I~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~-- 192 (413)
|++++|++.++++|. + .++.+|+ +.++++|+|||++|||++++ ++++++++.||+|+.|++.
T Consensus 287 i~~~~I~~~al~~L~--~----~gI~~v~-----~v~~~~L~rIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~i 350 (519)
T TIGR02339 287 FCQKGIDDLAQHYLA--K----AGILAVR-----RVKKSDIEKLARATGAKIVS-----SIKEITESDLGYAGLVEERKV 350 (519)
T ss_pred EECCCccHHHHHHHH--H----CCCEEEe-----cCCHHHHHHHHHHhCCEEeC-----chhhCChhhccCCceEEEEEE
Confidence 999999999999974 3 4677777 55899999999999999999 8889999999999999964
Q ss_pred -CCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHH
Q 015120 193 -KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKA 271 (413)
Q Consensus 193 -~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~ 271 (413)
++++++|++|+++ ..+||+|||+|+.+++|.+|+++|||+++++
T Consensus 351 g~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~ 395 (519)
T TIGR02339 351 GDDKMTFVEGCKNP-----------------------------------KAVTILLRGGTEHVVDELERSIQDALHVVAS 395 (519)
T ss_pred CCeEEEEEEcCCCC-----------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 5899999988765 5899999999999999999999999999999
Q ss_pred hhhcC-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhc---cCCCceee
Q 015120 272 AVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLS---SDNHKYGY 347 (413)
Q Consensus 272 al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~---~~~~~~G~ 347 (413)
++++| +|||||++||++|.+|++++.+..+.+| +++++|++||+.||++||+|||+|+.+++.+|++ .++.++|+
T Consensus 396 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gi 474 (519)
T TIGR02339 396 ALEDGKVVAGGGAVEIELALRLRSYARKIGGREQ-LAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGI 474 (519)
T ss_pred HhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeE
Confidence 99999 9999999999999999999877888888 6999999999999999999999999999999974 34678999
Q ss_pred ecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhc
Q 015120 348 NAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE 392 (413)
Q Consensus 348 d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~ 392 (413)
|+.+|+++||++.|||||+.||+++|+.|+|+|++|||||++|++
T Consensus 475 d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (519)
T TIGR02339 475 NVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIAA 519 (519)
T ss_pred EcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhhC
Confidence 999999999999999999999999999999999999999999863
No 16
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.8e-62 Score=513.15 Aligned_cols=339 Identities=20% Similarity=0.275 Sum_probs=295.8
Q ss_pred CccccC--Ch-hHHHHHHHhcC------CchhHHHHHHHHHHHhccCCc----------eeeecCCccccceeeeeceEE
Q 015120 1 MSKEVE--DS-ELADVAAVSAG------NNYEVGNMIAEAMSKVGRKGV----------VTLEEGKSAENMLYVVEGMQF 61 (413)
Q Consensus 1 ~a~pv~--~~-~L~~VA~ts~~------~~~~la~lv~~Ai~~vg~~~~----------I~~~~g~s~~ds~~~i~G~~~ 61 (413)
+++|++ +. +|.+||+||.+ ++++|++++++|+.+++.++. |.++.|++++|+ ++++|++|
T Consensus 127 ~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~ 205 (515)
T cd03338 127 MSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVF 205 (515)
T ss_pred hccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhc-eeeeeEEE
Confidence 467776 66 89999999988 678999999999999997653 555789999999 79999999
Q ss_pred ecccccCccccCcccCeeeecCeeEEEecccC-------------CCH-----------HHHHHHHHHHHhcCCCEEEEe
Q 015120 62 DRGYISPYFVTDSEKMAVEYENCKLLLVDKKI-------------TNA-----------RDLINVLEDAIRGAYPILIIA 117 (413)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~i-------------~~~-----------~~~~~~le~i~~~~~~lvI~~ 117 (413)
+++|.+|++ +|+.++||+|+++++++ +++ +++.++++.+++.|+||||++
T Consensus 206 ~k~~~~~~~------~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~ 279 (515)
T cd03338 206 TQKASKKAG------GPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQ 279 (515)
T ss_pred eccccCcCC------CCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence 999999752 47789999999988753 344 344556889999999999999
Q ss_pred ccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEEE---cCC
Q 015120 118 EDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKD 194 (413)
Q Consensus 118 ~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i---~~~ 194 (413)
++|++++++.+..+.+.+ .+|+||+ +.++++|+|||++|||++++ +++++++++||+|+.|++ +++
T Consensus 280 ~~i~~~~v~~l~~~~l~~-~~I~av~-----~~~~~~LerIa~~tGa~ii~-----sl~~l~~~~LG~~~~v~~~~~g~~ 348 (515)
T cd03338 280 KSILRDAVSDLALHFLAK-LKIMVVK-----DIEREEIEFICKTIGCKPVA-----SIDHFTEDKLGSADLVEEVSLGDG 348 (515)
T ss_pred CCcccccccHHHHHHHHH-CCceEEe-----cCCHHHHHHHHHHHCCEEec-----ccccCCHhhCCCCceEEEEEECCe
Confidence 998433333333333332 7899999 56899999999999999999 899999999999999995 356
Q ss_pred eEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhh
Q 015120 195 TTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVE 274 (413)
Q Consensus 195 ~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~ 274 (413)
+++++.+|.+ ++++|||+|||+|+.+++|.||+++||+++++++++
T Consensus 349 ~~~~i~~~~~----------------------------------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~ 394 (515)
T cd03338 349 KIVKITGVKN----------------------------------PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVK 394 (515)
T ss_pred EEEEEEecCC----------------------------------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8889988764 147999999999999999999999999999999999
Q ss_pred cC-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc---CCCceeeecC
Q 015120 275 EG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAA 350 (413)
Q Consensus 275 ~g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~---~~~~~G~d~~ 350 (413)
+| +|||||++|+++|.+|++++.+.++.+| +++++|++||+.||++||+|||+|+.+++.+|++. ++.++|||+.
T Consensus 395 ~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~-~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~ 473 (515)
T cd03338 395 KRALIPGGGAPEIEIALQLSEWARTLTGVEQ-YCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVR 473 (515)
T ss_pred CCCEEECCCHHHHHHHHHHHHHhccCCcHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceecc
Confidence 99 9999999999999999999877788888 69999999999999999999999999999999762 4678999999
Q ss_pred CCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhc
Q 015120 351 TGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE 392 (413)
Q Consensus 351 ~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~ 392 (413)
+|+++||++.|||||+.||+++|+.|+|+|++|||||++|++
T Consensus 474 ~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 474 KGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred CCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 999999999999999999999999999999999999999864
No 17
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.1e-62 Score=509.78 Aligned_cols=330 Identities=22% Similarity=0.314 Sum_probs=293.5
Q ss_pred CCh-hHHHHHHHhcC------CchhHHHHHHHHHHHhccCCc------ee--eecCCccccceeeeeceEEecccccCcc
Q 015120 6 EDS-ELADVAAVSAG------NNYEVGNMIAEAMSKVGRKGV------VT--LEEGKSAENMLYVVEGMQFDRGYISPYF 70 (413)
Q Consensus 6 ~~~-~L~~VA~ts~~------~~~~la~lv~~Ai~~vg~~~~------I~--~~~g~s~~ds~~~i~G~~~~~~~~~~~~ 70 (413)
++. .|.+||+||.+ ++++|++++++|+..++.++. |+ +..|++..|+ ++++|++|+++|.+|+
T Consensus 143 ~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds-~~v~Giv~~~~~~~~~- 220 (531)
T TIGR02347 143 VDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDT-TLIRGLVLDHGARHPD- 220 (531)
T ss_pred CCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCcccc-EEEeeEEEecCcCCCC-
Confidence 456 89999999975 488999999999999987642 33 2578898888 7999999999999997
Q ss_pred ccCcccCeeeecCeeEEEecccC-------------CCHHHHHHH-----------HHHHHhcCC-------C---EEEE
Q 015120 71 VTDSEKMAVEYENCKLLLVDKKI-------------TNARDLINV-----------LEDAIRGAY-------P---ILII 116 (413)
Q Consensus 71 ~~~~~~~~~~~~~~~Ili~d~~i-------------~~~~~~~~~-----------le~i~~~~~-------~---lvI~ 116 (413)
|+++++||+|+++++++ ++++++..+ ++++.+.+. + ||||
T Consensus 221 ------~~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~ 294 (531)
T TIGR02347 221 ------MPRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVIN 294 (531)
T ss_pred ------CceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEe
Confidence 68899999999999974 344554443 566666551 4 9999
Q ss_pred eccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEE---EEcC
Q 015120 117 AEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKV---VLTK 193 (413)
Q Consensus 117 ~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v---~i~~ 193 (413)
+++|++.++++|. + .+|++++ +.++++|+|||++|||++++ +++++++++||+|+.| .+++
T Consensus 295 ~k~I~~~a~~~L~--~----~~I~~i~-----rv~~~~le~ia~~tGa~~i~-----~l~~~~~~~LG~~~~v~~~~ig~ 358 (531)
T TIGR02347 295 QKGIDPPSLDLLA--K----EGIMALR-----RAKRRNMERLTLACGGEALN-----SVEDLTPECLGWAGLVYETSIGE 358 (531)
T ss_pred CCCccHHHHHHHH--H----CCceEEc-----cCCHHHHHHHHHHhCCEEec-----ccccCCccccccceEEEEEEECC
Confidence 9999999999964 4 5789988 45789999999999999999 8999999999999999 5788
Q ss_pred CeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhh
Q 015120 194 DTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAV 273 (413)
Q Consensus 194 ~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al 273 (413)
++|+||++|+++ ++|||+|||+|+.+++|.||+++||++++++++
T Consensus 359 ~~~~~i~~~~~~-----------------------------------~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~ 403 (531)
T TIGR02347 359 EKYTFIEEVKNP-----------------------------------KSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAI 403 (531)
T ss_pred eEEEEEEcCCCC-----------------------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999988865 599999999999999999999999999999999
Q ss_pred hcC-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc---CCCceeeec
Q 015120 274 EEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNA 349 (413)
Q Consensus 274 ~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~---~~~~~G~d~ 349 (413)
++| +|||||++|+++|.+|++++.++++++| +++++|++||+.||++||+|||+|+.+++.+|++. ++.++|+|+
T Consensus 404 ~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~-~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~ 482 (531)
T TIGR02347 404 EDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAK-LGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDL 482 (531)
T ss_pred hCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeec
Confidence 999 9999999999999999999887888888 69999999999999999999999999999999753 346789999
Q ss_pred CCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCC
Q 015120 350 ATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE 395 (413)
Q Consensus 350 ~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~ 395 (413)
.+|+++||++.|||||+.||+++|++|+|+|++|||||++|+++|.
T Consensus 483 ~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~ 528 (531)
T TIGR02347 483 ETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRS 528 (531)
T ss_pred cCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCccc
Confidence 9999999999999999999999999999999999999999988764
No 18
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.1e-62 Score=512.90 Aligned_cols=339 Identities=24% Similarity=0.311 Sum_probs=296.3
Q ss_pred CccccC--Ch-hHHHHHHHhcC------CchhHHHHHHHHHHHhcc---CCc---------eeeecCCccccceeeeece
Q 015120 1 MSKEVE--DS-ELADVAAVSAG------NNYEVGNMIAEAMSKVGR---KGV---------VTLEEGKSAENMLYVVEGM 59 (413)
Q Consensus 1 ~a~pv~--~~-~L~~VA~ts~~------~~~~la~lv~~Ai~~vg~---~~~---------I~~~~g~s~~ds~~~i~G~ 59 (413)
+++|++ ++ .|.+||+||.+ +.+.|++++++|+..++. +|. |.+..|++++|+ ++++|+
T Consensus 128 ~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s-~li~Gi 206 (527)
T cd03335 128 LSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKES-YLVNGY 206 (527)
T ss_pred hccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhc-ceeeeE
Confidence 467887 66 89999999966 458999999999999952 232 234689999988 799999
Q ss_pred EEecccccCccccCcccCeeeecCeeEEEecccCC-------------CHHHHH-----------HHHHHHHhcCCCEEE
Q 015120 60 QFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT-------------NARDLI-----------NVLEDAIRGAYPILI 115 (413)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~i~-------------~~~~~~-----------~~le~i~~~~~~lvI 115 (413)
+|+++|.+|. |+++++||+|+++++++. +++++. ++++++.+.|++|||
T Consensus 207 vi~~~~~~~~-------m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi 279 (527)
T cd03335 207 ALNCTRASQG-------MPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVL 279 (527)
T ss_pred EEecccCCCC-------CcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999974 889999999999999753 344443 346778899999999
Q ss_pred EeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCcc-ccCCCCcccccceEEE---E
Q 015120 116 IAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLA-LDKVGKEVLGNASKVV---L 191 (413)
Q Consensus 116 ~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~-l~~~~~~~lG~~~~v~---i 191 (413)
++++|++.++++|.. .++++++ +.++++|+|||++|||+++++..+++ .+++++++||+|+.|+ +
T Consensus 280 ~~k~I~d~al~~L~~------~~I~~v~-----~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~i 348 (527)
T cd03335 280 TTGGIDDMCLKYFVE------AGAMAVR-----RVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERI 348 (527)
T ss_pred eCCCCcHHHHHHHHH------CCcEEEE-----eCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEE
Confidence 999999999999754 4688888 55899999999999999999543331 2345566899999999 7
Q ss_pred cCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHH
Q 015120 192 TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKA 271 (413)
Q Consensus 192 ~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~ 271 (413)
+++++++|++|+++ ++|||+|||+|+.+++|.+|+++||++++++
T Consensus 349 g~~~~~~i~g~~~~-----------------------------------~~~TIllrG~t~~~l~e~er~i~Dal~~~~~ 393 (527)
T cd03335 349 GDDELILIKGTKKR-----------------------------------SSASIILRGANDFMLDEMERSLHDALCVVKR 393 (527)
T ss_pred CCeEEEEEEcCCCC-----------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 88899999988764 7999999999999999999999999999999
Q ss_pred hhhcC-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc---C------
Q 015120 272 AVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---D------ 341 (413)
Q Consensus 272 al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~---~------ 341 (413)
++++| +|||||++||+++.+|++++.++++++| +++++|++||+.||++||+|||+|+.+++.+|++. +
T Consensus 394 ~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~-~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~ 472 (527)
T cd03335 394 TLESNSVVPGGGAVETALSIYLENFATTLGSREQ-LAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDK 472 (527)
T ss_pred HhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCcccc
Confidence 99999 9999999999999999999888888888 69999999999999999999999999999999762 2
Q ss_pred --CCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccC
Q 015120 342 --NHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIK 394 (413)
Q Consensus 342 --~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~ 394 (413)
++++|+|+.+|+++||++.|||||+.||.++|+.|+|+|++|||||++|+..|
T Consensus 473 ~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 473 KHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred ccCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 45789999999999999999999999999999999999999999999998754
No 19
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.8e-61 Score=507.28 Aligned_cols=339 Identities=23% Similarity=0.309 Sum_probs=296.9
Q ss_pred ccccC--Ch-hHHHHHHHhcC------CchhHHHHHHHHHHHhcc---CCc---------eeeecCCccccceeeeeceE
Q 015120 2 SKEVE--DS-ELADVAAVSAG------NNYEVGNMIAEAMSKVGR---KGV---------VTLEEGKSAENMLYVVEGMQ 60 (413)
Q Consensus 2 a~pv~--~~-~L~~VA~ts~~------~~~~la~lv~~Ai~~vg~---~~~---------I~~~~g~s~~ds~~~i~G~~ 60 (413)
++|++ +. +|.+||+||.+ +++.|++++++|+..++. +|. |.+..|+++.|+ ++++|++
T Consensus 133 ~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s-~~i~Gi~ 211 (536)
T TIGR02340 133 SVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARES-YLVKGYA 211 (536)
T ss_pred ccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCcccc-EEEEEEE
Confidence 67887 66 89999999976 789999999999999862 332 233689999877 7999999
Q ss_pred EecccccCccccCcccCeeeecCeeEEEecccCC-------------CHHHHH-----------HHHHHHHhcCCCEEEE
Q 015120 61 FDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT-------------NARDLI-----------NVLEDAIRGAYPILII 116 (413)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~i~-------------~~~~~~-----------~~le~i~~~~~~lvI~ 116 (413)
|+++|.+|. |+++++||+|+++++++. +++++. +.++.+++.|++|||+
T Consensus 212 i~~~~~~~~-------m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~ 284 (536)
T TIGR02340 212 LNCTRASQQ-------MPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLT 284 (536)
T ss_pred EecccCCCC-------CcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEe
Confidence 999999874 899999999999999753 334333 3466788899999999
Q ss_pred eccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCc-cccCCCCcccccceEEE---Ec
Q 015120 117 AEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGL-ALDKVGKEVLGNASKVV---LT 192 (413)
Q Consensus 117 ~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~-~l~~~~~~~lG~~~~v~---i~ 192 (413)
+++|++.++++|. + .++++++ +.++++|+|||++|||+++++..++ ..+++++++||+|+.|+ ++
T Consensus 285 ~k~I~~~a~~~L~--k----~~I~~i~-----rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig 353 (536)
T TIGR02340 285 TGGIDDMCLKYFV--E----AGAMGVR-----RCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIA 353 (536)
T ss_pred CCCCcHHHHHHHH--H----CCcEEEe-----cCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEEC
Confidence 9999999999965 3 4688888 5589999999999999999955444 23456677899999999 78
Q ss_pred CCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHh
Q 015120 193 KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA 272 (413)
Q Consensus 193 ~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a 272 (413)
+++|++|++++++ ++|||+|||+|+.+++|++|+++|||++++++
T Consensus 354 ~~~~~~i~~~~~~-----------------------------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~ 398 (536)
T TIGR02340 354 DDECILIKGTKGR-----------------------------------KSASIILRGANDFMLDEMERSLHDALCVVKRT 398 (536)
T ss_pred CeEEEEEEcCCCC-----------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988765 59999999999999999999999999999999
Q ss_pred hhcC-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc-----------
Q 015120 273 VEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS----------- 340 (413)
Q Consensus 273 l~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~----------- 340 (413)
+++| +|||||++|++++.+|++++.+..+++| +++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 399 ~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~-~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~ 477 (536)
T TIGR02340 399 LESNSVVPGGGAVETALSIYLENFATTLGSREQ-LAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKK 477 (536)
T ss_pred hcCCCEEECCCHHHHHHHHHHHHHhhhCCChhH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccc
Confidence 9999 9999999999999999998777788888 69999999999999999999999999999999751
Q ss_pred CCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCC
Q 015120 341 DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE 395 (413)
Q Consensus 341 ~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~ 395 (413)
++.++|||+.+|+++||++.|||||+.||+++|+.|+|+|++|||||++|++.|+
T Consensus 478 ~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~ 532 (536)
T TIGR02340 478 HLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPE 532 (536)
T ss_pred cCceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence 1357899999999999999999999999999999999999999999999988763
No 20
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.5e-61 Score=504.36 Aligned_cols=335 Identities=20% Similarity=0.262 Sum_probs=298.0
Q ss_pred CccccC--Ch-hHHHHHHHh--cC----CchhHHHHHHHHHHHhccCC-----------c--eeeecCCccccceeeeec
Q 015120 1 MSKEVE--DS-ELADVAAVS--AG----NNYEVGNMIAEAMSKVGRKG-----------V--VTLEEGKSAENMLYVVEG 58 (413)
Q Consensus 1 ~a~pv~--~~-~L~~VA~ts--~~----~~~~la~lv~~Ai~~vg~~~-----------~--I~~~~g~s~~ds~~~i~G 58 (413)
+++|++ +. .|.++|+|+ ++ +++.|++++++|+..++.++ . |++.+|+++.|+ ++++|
T Consensus 135 ~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS-~lv~G 213 (525)
T TIGR02344 135 ISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDS-CVLKG 213 (525)
T ss_pred hccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhc-Ccccc
Confidence 467887 45 799999877 32 36899999999999998643 1 344579999998 69999
Q ss_pred eEEecccccCccccCcccCeeeecCeeEEEecccCC-------------CHHHHHHHHH-----------HHHhcCCCEE
Q 015120 59 MQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKIT-------------NARDLINVLE-----------DAIRGAYPIL 114 (413)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~i~-------------~~~~~~~~le-----------~i~~~~~~lv 114 (413)
++|++++.++. |+++++||+|+++++++. +++++.++++ ++.+.|++||
T Consensus 214 vvi~k~~~~~~-------m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vI 286 (525)
T TIGR02344 214 VMINKDVTHPK-------MRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLV 286 (525)
T ss_pred eEEecccCCCC-------CccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 99999987753 899999999999999753 4678877655 7888999999
Q ss_pred EEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCccccc-ceEEEE--
Q 015120 115 IIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN-ASKVVL-- 191 (413)
Q Consensus 115 I~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~-~~~v~i-- 191 (413)
|++++|++.++++| .+ ++|+|++ +.++++|+|||++|||++++ +++++++++||+ |+.|++
T Consensus 287 i~~k~I~dla~~~l--~~----~~I~av~-----~v~~~~LerIa~~tGa~ii~-----~l~~l~~~~lG~~~~~v~~~~ 350 (525)
T TIGR02344 287 ITEKGVSDLAQHYL--LK----ANISAIR-----RVRKTDNNRIARACGATIVN-----RPEELRESDVGTGCGLFEVKK 350 (525)
T ss_pred EeCCCccHHHHHHH--hH----CCceEEe-----cCCHHHHHHHHHHhCCeEec-----chhhCCHhhcCCcCCEEEEEE
Confidence 99999999999985 34 6788888 66899999999999999999 889999999999 998886
Q ss_pred -cCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHH
Q 015120 192 -TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATK 270 (413)
Q Consensus 192 -~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k 270 (413)
++++++||++|+++ ..|||+|||+|+.+++|.||+++||+++++
T Consensus 351 ig~~~~~~~~g~~~~-----------------------------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk 395 (525)
T TIGR02344 351 IGDEYFTFFTECKDP-----------------------------------KACTILLRGASKDVLNEIERNLQDAMAVAR 395 (525)
T ss_pred ECCeEEEEEEcCCCC-----------------------------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999988765 599999999999999999999999999999
Q ss_pred HhhhcC-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc---C-CCce
Q 015120 271 AAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---D-NHKY 345 (413)
Q Consensus 271 ~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~---~-~~~~ 345 (413)
++++++ +|||||++||++|.+|++++.++++.+| +++++|++||+.||++||+|||+|+.+++++|++. + +.++
T Consensus 396 ~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~ 474 (525)
T TIGR02344 396 NVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQ-WPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTW 474 (525)
T ss_pred HHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeE
Confidence 999997 9999999999999999999888889888 69999999999999999999999999999999862 3 5689
Q ss_pred eeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCC
Q 015120 346 GYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE 395 (413)
Q Consensus 346 G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~ 395 (413)
|+|+.+|+++||++.|||||+.||+++|+.|+|+|++|||||++|.+.|+
T Consensus 475 Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 524 (525)
T TIGR02344 475 GIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVKK 524 (525)
T ss_pred eEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCCC
Confidence 99999999999999999999999999999999999999999999988763
No 21
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.9e-61 Score=503.29 Aligned_cols=336 Identities=18% Similarity=0.271 Sum_probs=299.5
Q ss_pred CccccCC------h-hHHHHHHHhcC------CchhHHHHHHHHHHHhccCC---c--eeeecCCccccceeeeeceEEe
Q 015120 1 MSKEVED------S-ELADVAAVSAG------NNYEVGNMIAEAMSKVGRKG---V--VTLEEGKSAENMLYVVEGMQFD 62 (413)
Q Consensus 1 ~a~pv~~------~-~L~~VA~ts~~------~~~~la~lv~~Ai~~vg~~~---~--I~~~~g~s~~ds~~~i~G~~~~ 62 (413)
+++|+++ . .|.+||+||.+ ++++|++++++|+..++.++ . |....|+++.|+ ++++|++|+
T Consensus 135 ~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds-~lv~Giv~~ 213 (522)
T cd03340 135 IAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDS-QLVNGVAFK 213 (522)
T ss_pred hhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhc-eeeeeEEEe
Confidence 3566653 5 69999999955 78999999999999998764 2 333589999999 699999999
Q ss_pred cccccCccccCcccCeeeecCeeEEEeccc-------------CCCHHHH-----------HHHHHHHHhcCCCEEEEec
Q 015120 63 RGYISPYFVTDSEKMAVEYENCKLLLVDKK-------------ITNARDL-----------INVLEDAIRGAYPILIIAE 118 (413)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~-------------i~~~~~~-----------~~~le~i~~~~~~lvI~~~ 118 (413)
++|.+|+|. +|++.++||+|++++++ +++++++ .+.++.+.+.|+++|++++
T Consensus 214 k~~~~~~~~----~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~ 289 (522)
T cd03340 214 KTFSYAGFE----QQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKL 289 (522)
T ss_pred cccCccccc----cCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 999999764 46788999999999997 4566654 4457778889999999999
Q ss_pred cCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEE---EcCCe
Q 015120 119 DIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDT 195 (413)
Q Consensus 119 ~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~---i~~~~ 195 (413)
+|++.++++|. + .+|++++ ++++++|+|||++|||++++ +++++++++||+|+.|+ +++++
T Consensus 290 ~i~d~a~~~l~--~----~~I~~~~-----~v~~~~l~rIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~ 353 (522)
T cd03340 290 PIGDLATQYFA--D----RDIFCAG-----RVPEEDLKRVAQATGGSIQT-----TVSNITDDVLGTCGLFEERQVGGER 353 (522)
T ss_pred CCcHHHHHHHH--H----CCcEEEE-----eCCHHHHHHHHHHHCCEEee-----ccccCCccccccceEEEEEEECCEE
Confidence 99999999964 4 4677777 55889999999999999999 88999999999999998 67889
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhc
Q 015120 196 TTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 275 (413)
Q Consensus 196 ~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~ 275 (413)
+++|.+|+.+ +.+||++||+|+.+++|.||+++||++++++++++
T Consensus 354 ~~~~~~~~~~-----------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~ 398 (522)
T cd03340 354 YNIFTGCPKA-----------------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKN 398 (522)
T ss_pred EEEEECCCCC-----------------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999998764 68999999999999999999999999999999999
Q ss_pred C-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc---CC-CceeeecC
Q 015120 276 G-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DN-HKYGYNAA 350 (413)
Q Consensus 276 g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~---~~-~~~G~d~~ 350 (413)
| +|||||++|++++.+|++++.+..+++| +++++|++||+.||++||+|||+|+.+++.+|++. ++ .++|||+.
T Consensus 399 ~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~-~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~ 477 (522)
T cd03340 399 DSVVAGGGAIEMELSKYLRDYSRTIAGKQQ-LVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDIN 477 (522)
T ss_pred CCEEECcCHHHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCC
Confidence 8 9999999999999999999877888888 69999999999999999999999999999999863 34 67999999
Q ss_pred CCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhcc
Q 015120 351 TGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI 393 (413)
Q Consensus 351 ~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~ 393 (413)
+|+++||++.|||||+.||+++|+.|+|+|++|||||++|+++
T Consensus 478 ~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~ 520 (522)
T cd03340 478 NEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNP 520 (522)
T ss_pred CCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCC
Confidence 9999999999999999999999999999999999999999774
No 22
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.9e-61 Score=502.34 Aligned_cols=330 Identities=21% Similarity=0.283 Sum_probs=292.4
Q ss_pred CccccC----Ch-hHHHHHHHhcCC------chhHHHHHHHHHHHhccC-------Cc--eeeecCCccccceeeeeceE
Q 015120 1 MSKEVE----DS-ELADVAAVSAGN------NYEVGNMIAEAMSKVGRK-------GV--VTLEEGKSAENMLYVVEGMQ 60 (413)
Q Consensus 1 ~a~pv~----~~-~L~~VA~ts~~~------~~~la~lv~~Ai~~vg~~-------~~--I~~~~g~s~~ds~~~i~G~~ 60 (413)
+|+|++ +. .|.+||+||.+. .+.|++++++|+..+... .. |.+..|++++|+ ++++|++
T Consensus 142 ~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS-~~v~Giv 220 (526)
T cd03339 142 IADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDT-KLVKGIV 220 (526)
T ss_pred hccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHc-ceeeeEE
Confidence 356775 45 799999999763 368999999999988531 11 444689999999 6999999
Q ss_pred EecccccCccccCcccCeeeecCeeEEEeccc-------------CCCHHH-----------HHHHHHHHHhcCCCEEEE
Q 015120 61 FDRGYISPYFVTDSEKMAVEYENCKLLLVDKK-------------ITNARD-----------LINVLEDAIRGAYPILII 116 (413)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~-------------i~~~~~-----------~~~~le~i~~~~~~lvI~ 116 (413)
|+++|.+|+ |++.++||+|++++++ ++++++ +.++++++++.|+||||+
T Consensus 221 i~~~~~~~~-------m~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~ 293 (526)
T cd03339 221 IDKDFSHPQ-------MPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVIC 293 (526)
T ss_pred EecccCCCC-------CCceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEe
Confidence 999999997 6778899999999974 567777 555688999999999999
Q ss_pred eccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEEE---c-
Q 015120 117 AEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---T- 192 (413)
Q Consensus 117 ~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i---~- 192 (413)
+++|++.++++|.. .++.||+++ ++++|+|||++|||++++ +++++++++||+|+.|+. +
T Consensus 294 ~~~I~~~al~~L~~------~~I~av~~v-----~~~~LerIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~ 357 (526)
T cd03339 294 QWGFDDEANHLLLQ------NGLPAVRWV-----GGVEIELIAIATGGRIVP-----RFEDLSPEKLGKAGLVREISFGT 357 (526)
T ss_pred CCCCCHHHHHHHHH------CCCEEEEeC-----CHHHHHHHHHHhCCEEec-----chhhCChhhcccCceEEEEEecC
Confidence 99999999999764 357788854 678899999999999999 899999999999999983 3
Q ss_pred -CCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHH
Q 015120 193 -KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKA 271 (413)
Q Consensus 193 -~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~ 271 (413)
+++++|+++|+++ +++||+|||+|+.+++|.||+++|||+++++
T Consensus 358 ~~~~~~~i~g~~~~-----------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~ 402 (526)
T cd03339 358 TKDKMLVIEGCPNS-----------------------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRN 402 (526)
T ss_pred CCcEEEEEECCCCC-----------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 4688999988865 6999999999999999999999999999999
Q ss_pred hhhcC-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhc----cCCCcee
Q 015120 272 AVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLS----SDNHKYG 346 (413)
Q Consensus 272 al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~----~~~~~~G 346 (413)
++++| +|||||++||++|..|++++.+.++.+| +++++|++||++||++||+|||+|+.+++++|+. .++.++|
T Consensus 403 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~G 481 (526)
T cd03339 403 LIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQ-YAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLG 481 (526)
T ss_pred HhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEe
Confidence 99999 9999999999999999999877888887 6999999999999999999999999999999973 2356799
Q ss_pred eecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHh
Q 015120 347 YNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVV 390 (413)
Q Consensus 347 ~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI 390 (413)
||+.+|+++||++.|||||+.||+++|+.|+|+|++|||||++|
T Consensus 482 id~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii 525 (526)
T cd03339 482 IDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVI 525 (526)
T ss_pred eecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceec
Confidence 99999999999999999999999999999999999999999987
No 23
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-60 Score=500.91 Aligned_cols=338 Identities=23% Similarity=0.296 Sum_probs=294.5
Q ss_pred ccCC---h-hHHHHHHHhc-----CCchhHHHHHHHHHHHhccCC--c-------eeeecCCccccceeeeeceEEeccc
Q 015120 4 EVED---S-ELADVAAVSA-----GNNYEVGNMIAEAMSKVGRKG--V-------VTLEEGKSAENMLYVVEGMQFDRGY 65 (413)
Q Consensus 4 pv~~---~-~L~~VA~ts~-----~~~~~la~lv~~Ai~~vg~~~--~-------I~~~~g~s~~ds~~~i~G~~~~~~~ 65 (413)
|+++ . .|.+||++|. +++++|++++++|+..++.++ . |.+..|++++|+ ++++|++|++++
T Consensus 141 ~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds-~li~Gi~~~~~~ 219 (531)
T TIGR02346 141 EVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNS-EVLKGMVFNREA 219 (531)
T ss_pred cCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhc-eeEeeeEEeccC
Confidence 6643 5 7999977764 358999999999999998643 2 222489999988 799999999984
Q ss_pred ccCccccCcccCeeeecCeeEEEeccc-------------CCCHHHH-----------HHHHHHHHhcCCCEEEEeccCc
Q 015120 66 ISPYFVTDSEKMAVEYENCKLLLVDKK-------------ITNARDL-----------INVLEDAIRGAYPILIIAEDIE 121 (413)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~Ili~d~~-------------i~~~~~~-----------~~~le~i~~~~~~lvI~~~~i~ 121 (413)
.+ +++.++||+|++++++ +++++++ .++++++++.|+||||++++|+
T Consensus 220 ~~---------~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~ 290 (531)
T TIGR02346 220 EG---------SVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVG 290 (531)
T ss_pred CC---------CceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcC
Confidence 32 5778999999999986 3454444 4458899999999999999999
Q ss_pred hHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEEE---cCCeEEE
Q 015120 122 QEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTI 198 (413)
Q Consensus 122 ~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~ 198 (413)
+.++++|. + .+|+||++| ++.+|+|||.+|||++++ +++++++++||+|+.|++ +++++.+
T Consensus 291 d~~~~~l~--~----~~I~av~~~-----~~~~l~~Ia~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~ 354 (531)
T TIGR02346 291 DMALHYCE--K----YNIMVLKIP-----SKFELRRLCKTVGATPLA-----RLGAPQPEEIGYVDSVYVSEIGGQKVTV 354 (531)
T ss_pred HHHHHHHH--H----CCcEEEecC-----CHHHHHHHHHHHCCEEec-----ccccCCHhHccccceEEEEEECCEEEEE
Confidence 99999854 4 679999988 456899999999999999 888999999999999985 4678899
Q ss_pred EcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC-c
Q 015120 199 VGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-I 277 (413)
Q Consensus 199 ~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-v 277 (413)
+.++.. +++++||+|||+|+.+++|+||+++|||+++++++++| +
T Consensus 355 i~~~~~----------------------------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~v 400 (531)
T TIGR02346 355 FKQENG----------------------------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRF 400 (531)
T ss_pred EEccCC----------------------------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 987652 25799999999999999999999999999999999999 9
Q ss_pred cccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc---CCCceeeecCCCc-
Q 015120 278 VVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGN- 353 (413)
Q Consensus 278 VpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~---~~~~~G~d~~~g~- 353 (413)
|||||++||++|.+|++++.++++.+| +++++|++||+.||++||+|||+|+.+++.+|++. ++.++|||+.+|+
T Consensus 401 VpGGG~~e~~ls~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~ 479 (531)
T TIGR02346 401 LPGAGATEIELALRLKKYANKLPGLDQ-YAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESD 479 (531)
T ss_pred EECcCHHHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCc
Confidence 999999999999999999877788888 69999999999999999999999999999999763 4668999999999
Q ss_pred -ccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCCCCCCCCC
Q 015120 354 -YEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 402 (413)
Q Consensus 354 -i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~ 402 (413)
++||++.|||||+.||+++|+.|+|+|++|||||++|...|...|++|+
T Consensus 480 ~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~~~~~ 529 (531)
T TIGR02346 480 GVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAGGPKPPQ 529 (531)
T ss_pred cccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCCCCCC
Confidence 6999999999999999999999999999999999999998776666443
No 24
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.5e-60 Score=500.35 Aligned_cols=335 Identities=19% Similarity=0.265 Sum_probs=297.8
Q ss_pred CccccC-----Ch-hHHHHHHHhcC------CchhHHHHHHHHHHHhccC-------CceeeecCCccccceeeeeceEE
Q 015120 1 MSKEVE-----DS-ELADVAAVSAG------NNYEVGNMIAEAMSKVGRK-------GVVTLEEGKSAENMLYVVEGMQF 61 (413)
Q Consensus 1 ~a~pv~-----~~-~L~~VA~ts~~------~~~~la~lv~~Ai~~vg~~-------~~I~~~~g~s~~ds~~~i~G~~~ 61 (413)
+|+|++ +. .|.+||+||.+ ++++|++++++|+.+++.+ ++++ ..|++++|+ ++++|++|
T Consensus 136 ~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~k-i~Ggs~~ds-~~v~Giv~ 213 (522)
T TIGR02345 136 IAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKK-VQGGSLQDS-VLVNGVAF 213 (522)
T ss_pred hccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhHheEEe-ecCCCHHhc-ceecceEE
Confidence 467776 44 79999999965 7899999999999999865 3344 589999999 59999999
Q ss_pred ecccccCccccCcccCeeeecCeeEEEecccC-------------CCHHHHHH-----------HHHHHHhcCCCEEEEe
Q 015120 62 DRGYISPYFVTDSEKMAVEYENCKLLLVDKKI-------------TNARDLIN-----------VLEDAIRGAYPILIIA 117 (413)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~i-------------~~~~~~~~-----------~le~i~~~~~~lvI~~ 117 (413)
+++|.+|+|. +|+++++||+|+++++++ ++++++.+ .++++.+.|+++|+++
T Consensus 214 ~~~~~~~~~~----~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~ 289 (522)
T TIGR02345 214 KKTFSYAGFE----QQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSK 289 (522)
T ss_pred ecccCccccc----cCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeC
Confidence 9999999874 477889999999999974 45555443 3556778899999999
Q ss_pred ccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEEE---cCC
Q 015120 118 EDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKD 194 (413)
Q Consensus 118 ~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i---~~~ 194 (413)
++|++.++++|. + .+|.+++ ++.++++++++++|||++++ +++++++++||+|+.|+. +++
T Consensus 290 ~~i~d~~~~~L~--~----~~I~~~~-----~v~~~dl~ria~~tga~ii~-----~~~~l~~~~LG~~~~ie~~~~~~~ 353 (522)
T TIGR02345 290 LPIGDLATQYFA--D----HNIFCAG-----RVSDEDLKRVVKACGGSIQS-----TTSDLEADVLGTCALFEERQIGSE 353 (522)
T ss_pred CCccHHHHHHHH--H----CCcEEEe-----cCCHHHHHHHHHHhCCeEEc-----chhhCChhhccCCceEEEEEECCe
Confidence 999999999954 4 5688887 55889999999999999999 889999999999999984 567
Q ss_pred eEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhh
Q 015120 195 TTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVE 274 (413)
Q Consensus 195 ~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~ 274 (413)
++++|+||+++ ++|||+|||+|+.+++|.+|+++|||++++++++
T Consensus 354 r~~~~~g~~~~-----------------------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~ 398 (522)
T TIGR02345 354 RYNYFTGCPHA-----------------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALK 398 (522)
T ss_pred EEEEEEcCCCC-----------------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999988754 5999999999999999999999999999999999
Q ss_pred cC-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc---CCCceeeecC
Q 015120 275 EG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAA 350 (413)
Q Consensus 275 ~g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~---~~~~~G~d~~ 350 (413)
++ +|||||++|++++.+|++++.+..+.+| +++++|++||+.||++||+|||+|+.+++.+|++. ++.++|||+.
T Consensus 399 ~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~-~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~ 477 (522)
T TIGR02345 399 ARKIVAGGGAIEMELSKILREHSKKIDGKQQ-LIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDIN 477 (522)
T ss_pred CCCEEeCCCHHHHHHHHHHHHHHhhCCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCC
Confidence 86 9999999999999999998877788888 69999999999999999999999999999999862 4567999999
Q ss_pred CCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhcc
Q 015120 351 TGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI 393 (413)
Q Consensus 351 ~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~ 393 (413)
+|+++||++.|||||+.||+++|+.|+|+|++|||||++|+++
T Consensus 478 ~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 478 TEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred CCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 9999999999999999999999999999999999999999874
No 25
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-60 Score=498.06 Aligned_cols=334 Identities=18% Similarity=0.285 Sum_probs=295.8
Q ss_pred CccccC-----Ch-hHHHHHHHh--cC----CchhHHHHHHHHHHHhccC----C-ceeeecCCccccceeeeeceEEec
Q 015120 1 MSKEVE-----DS-ELADVAAVS--AG----NNYEVGNMIAEAMSKVGRK----G-VVTLEEGKSAENMLYVVEGMQFDR 63 (413)
Q Consensus 1 ~a~pv~-----~~-~L~~VA~ts--~~----~~~~la~lv~~Ai~~vg~~----~-~I~~~~g~s~~ds~~~i~G~~~~~ 63 (413)
+++|++ +. +|.+||+|| ++ ++++|++++++|+..++.. . .|.+..|++++|+ .+++|+++++
T Consensus 134 ~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds-~l~~G~v~~~ 212 (517)
T cd03336 134 SAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDS-YLDEGFLLDK 212 (517)
T ss_pred hccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccce-EEEeeEEEec
Confidence 356763 24 799999955 44 6799999999999998632 2 2444689999999 5999999999
Q ss_pred ccccCccccCcccCeeeecCeeEEEecccCC--------------CHHHHHHH-----------HHHHHhcCCCEEEEec
Q 015120 64 GYISPYFVTDSEKMAVEYENCKLLLVDKKIT--------------NARDLINV-----------LEDAIRGAYPILIIAE 118 (413)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~Ili~d~~i~--------------~~~~~~~~-----------le~i~~~~~~lvI~~~ 118 (413)
.+.++ |+++++||+|+++++++. +++++..+ ++.+++.|++++++++
T Consensus 213 ~~~~~--------~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~ 284 (517)
T cd03336 213 KIGVN--------QPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQ 284 (517)
T ss_pred ccCCC--------CCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCC
Confidence 87542 688999999999999753 67777543 6678889999999999
Q ss_pred cCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEE---EcCCe
Q 015120 119 DIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDT 195 (413)
Q Consensus 119 ~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~---i~~~~ 195 (413)
.|++.++++| .+ ++|++|++| ++++|+|||++|||++++ +++++++++||+|+.|+ +++++
T Consensus 285 ~I~~~~~~~l--~~----~~I~av~~v-----~~~~L~rIa~~tGa~ii~-----~l~~~~~~~LG~~~~v~~~~ig~~~ 348 (517)
T cd03336 285 LIYNYPEQLF--AD----AGIMAIEHA-----DFDGVERLALVTGGEIAS-----TFDHPELVKLGTCKLIEEIMIGEDK 348 (517)
T ss_pred CccHHHHHHH--HH----CCcEEEecC-----CHHHHHHHHHHhCCEEec-----ccCCCCcccccccceEEEEEECCeE
Confidence 9999999995 34 679999977 677899999999999999 89999999999999998 35789
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhc
Q 015120 196 TTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 275 (413)
Q Consensus 196 ~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~ 275 (413)
+++|.+|+++ ++|||+|||+|+.+++|.||+++||++++++++++
T Consensus 349 ~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~ 393 (517)
T cd03336 349 LIRFSGVAAG-----------------------------------EACTIVLRGASQQILDEAERSLHDALCVLAQTVKD 393 (517)
T ss_pred EEEEEccCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999988754 69999999999999999999999999999999999
Q ss_pred C-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhc---cCCCceeeecCC
Q 015120 276 G-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLS---SDNHKYGYNAAT 351 (413)
Q Consensus 276 g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~---~~~~~~G~d~~~ 351 (413)
| +|||||++|+++|.+|++++.+..+++| +++++|++||+.||++||+|||+|+.+++.+|++ .++.++|||+.+
T Consensus 394 ~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~ 472 (517)
T cd03336 394 TRVVLGGGCSEMLMAKAVEELAKKTPGKKS-LAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRK 472 (517)
T ss_pred CCEEeCCCHHHHHHHHHHHHHhhhCCCHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCC
Confidence 9 9999999999999999999888888888 6999999999999999999999999999999986 256789999999
Q ss_pred CcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCC
Q 015120 352 GNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE 395 (413)
Q Consensus 352 g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~ 395 (413)
|+++||++.|||||+.||+++|+.|+|+|++|||||++|+++|+
T Consensus 473 g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 516 (517)
T cd03336 473 GTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAPR 516 (517)
T ss_pred CCccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCCC
Confidence 99999999999999999999999999999999999999998763
No 26
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-60 Score=499.36 Aligned_cols=339 Identities=20% Similarity=0.272 Sum_probs=290.5
Q ss_pred CccccC--Ch-hHHHHHHHhcC------CchhHHHHHHHHHHHhcc---CCc-------eeeecCCccccceeeeeceEE
Q 015120 1 MSKEVE--DS-ELADVAAVSAG------NNYEVGNMIAEAMSKVGR---KGV-------VTLEEGKSAENMLYVVEGMQF 61 (413)
Q Consensus 1 ~a~pv~--~~-~L~~VA~ts~~------~~~~la~lv~~Ai~~vg~---~~~-------I~~~~g~s~~ds~~~i~G~~~ 61 (413)
+++|++ ++ +|.+||+||.+ +.+.|++++++|+..++. ++. |.+..|+++.|+ ++++|++|
T Consensus 128 ~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds-~li~Givl 206 (517)
T TIGR02342 128 MSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDT-ELIEGLVF 206 (517)
T ss_pred hccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhc-EEEeeEEE
Confidence 467776 66 89999999975 345679999999999975 221 223578899998 69999999
Q ss_pred ecccccCccccCcccCeeeecCeeEEEecccC-------------CCHH-----------HHHHHHHHHHhcCCCEEEEe
Q 015120 62 DRGYISPYFVTDSEKMAVEYENCKLLLVDKKI-------------TNAR-----------DLINVLEDAIRGAYPILIIA 117 (413)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~i-------------~~~~-----------~~~~~le~i~~~~~~lvI~~ 117 (413)
+++|.++. +||+.++||+|+++++++ ++++ ++.++++++++.|+|||||+
T Consensus 207 ~k~~~~~~------~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~ 280 (517)
T TIGR02342 207 TQKASRSA------GGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQ 280 (517)
T ss_pred eccccccC------CCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence 99998842 378889999999999863 3433 34456888999999999999
Q ss_pred ccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEE-E--cCC
Q 015120 118 EDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV-L--TKD 194 (413)
Q Consensus 118 ~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~-i--~~~ 194 (413)
++|++++++.+..+.+.+ ++|+||+ +.++++|+|||++|||++++ +++++++++||+|+.|+ + +++
T Consensus 281 ~~I~~~~l~~l~~~~l~~-~~I~av~-----~v~~~~LerIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~~~~~ 349 (517)
T TIGR02342 281 KSILRDAVNDLALHFLAK-MKIMVVK-----DIEREEVEFICKTIGCKPIA-----SIDHFTADKLGSAELVEEVTTDGG 349 (517)
T ss_pred CCcccccccHHHHHHHhh-CCceEEe-----cCCHHHHHHHHHHHCCEEEc-----chhhcCcccCcCCceEEEEEECCe
Confidence 999433333333333333 7899999 55899999999999999999 88999999999999998 3 456
Q ss_pred eEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhh
Q 015120 195 TTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVE 274 (413)
Q Consensus 195 ~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~ 274 (413)
+++++.+++++ ++++||+|||+|+.+++|.||+++||+++++++++
T Consensus 350 ~~~~i~~~~~~----------------------------------~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~ 395 (517)
T TIGR02342 350 KIIKITGIQNA----------------------------------GKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVK 395 (517)
T ss_pred EEEEEEccCCC----------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77888877652 47999999999999999999999999999999999
Q ss_pred cC-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc---CCCceeeecC
Q 015120 275 EG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAA 350 (413)
Q Consensus 275 ~g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~---~~~~~G~d~~ 350 (413)
++ +|||||++||++|.+|++++.+.++.+| +++++|++||+.||++||+|||+|+.+++++|++. ++.++|+|+.
T Consensus 396 ~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~ 474 (517)
T TIGR02342 396 KRGLIPGGGAPEIEIAIKLSKLARTMKGVES-YCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVR 474 (517)
T ss_pred CCCEEECcCHHHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecC
Confidence 96 9999999999999999999887888888 69999999999999999999999999999999862 4678999999
Q ss_pred CCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhc
Q 015120 351 TGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE 392 (413)
Q Consensus 351 ~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~ 392 (413)
+|+++||++.|||||+.||+++|+.|+|+|++|||||++|++
T Consensus 475 ~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 475 KGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred CCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence 999999999999999999999999999999999999999875
No 27
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.3e-60 Score=497.46 Aligned_cols=332 Identities=20% Similarity=0.297 Sum_probs=292.8
Q ss_pred CccccC----Ch-hHHHHHHHhcC------CchhHHHHHHHHHHHhccC-------Cc--eeeecCCccccceeeeeceE
Q 015120 1 MSKEVE----DS-ELADVAAVSAG------NNYEVGNMIAEAMSKVGRK-------GV--VTLEEGKSAENMLYVVEGMQ 60 (413)
Q Consensus 1 ~a~pv~----~~-~L~~VA~ts~~------~~~~la~lv~~Ai~~vg~~-------~~--I~~~~g~s~~ds~~~i~G~~ 60 (413)
+++|++ +. .|.+||+||.+ ..+.|++++++|+..+... .. |.+..|++++|+ ++++|++
T Consensus 146 ~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds-~~v~Gi~ 224 (532)
T TIGR02343 146 ISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDT-KLIKGII 224 (532)
T ss_pred hccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccc-eeEeeEE
Confidence 356664 35 79999999965 3457899999999988531 11 344689999999 7999999
Q ss_pred EecccccCccccCcccCeeeecCeeEEEeccc-------------CCCHHHH-----------HHHHHHHHhcCCCEEEE
Q 015120 61 FDRGYISPYFVTDSEKMAVEYENCKLLLVDKK-------------ITNARDL-----------INVLEDAIRGAYPILII 116 (413)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~-------------i~~~~~~-----------~~~le~i~~~~~~lvI~ 116 (413)
|+++|.+|+ |++.++||+|++++++ +++++++ .++++++++.|+|||||
T Consensus 225 i~~~~~~~~-------m~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~ 297 (532)
T TIGR02343 225 IDKDFSHPQ-------MPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVIC 297 (532)
T ss_pred EecCcCCCC-------CCeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEe
Confidence 999999987 6888999999999974 5678877 56688999999999999
Q ss_pred eccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEEE---cC
Q 015120 117 AEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TK 193 (413)
Q Consensus 117 ~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i---~~ 193 (413)
+++|++.++++|..| ++.+|+++ ++++|+|||++|||++++ +++++++++||+|+.|+. +.
T Consensus 298 ~~~I~~~al~~L~~~------~i~~v~~~-----~~~~l~~Ia~~tGa~~i~-----~l~~~~~~~LG~a~~v~~~~ig~ 361 (532)
T TIGR02343 298 QWGFDDEANHLLLQN------DLPAVRWV-----GGHELELIAIATGGRIVP-----RFEELSEDKLGKAGLVREISFGT 361 (532)
T ss_pred CCCccHHHHHHHHHC------CcEEEEcC-----CHHHHHHHHHHhCCEEec-----ccccCCHhHCcccceEEEEEecC
Confidence 999999999997643 56788844 678899999999999999 899999999999999983 33
Q ss_pred --CeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHH
Q 015120 194 --DTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKA 271 (413)
Q Consensus 194 --~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~ 271 (413)
++++++++|+++ +++||+|||+|+.+++|.||+++||++++++
T Consensus 362 ~~~~~~~i~~~~~~-----------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~ 406 (532)
T TIGR02343 362 TKDRMLVIEQCKNS-----------------------------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRN 406 (532)
T ss_pred CcceEEEEECCCCC-----------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 588999988875 5999999999999999999999999999999
Q ss_pred hhhcC-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhc----cCCCcee
Q 015120 272 AVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLS----SDNHKYG 346 (413)
Q Consensus 272 al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~----~~~~~~G 346 (413)
+++++ +|||||++||++|++|++++.++++.+| +++++|++||+.||++||+|||+|+.+++.+|++ .++.++|
T Consensus 407 ~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~G 485 (532)
T TIGR02343 407 LIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQ-YAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLG 485 (532)
T ss_pred HHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccC
Confidence 99997 9999999999999999999888888888 6999999999999999999999999999999974 2356799
Q ss_pred eecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhc
Q 015120 347 YNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE 392 (413)
Q Consensus 347 ~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~ 392 (413)
+|+.+|+++||++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 486 id~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 486 VDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred eeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 9999999999999999999999999999999999999999999853
No 28
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=9.9e-60 Score=495.04 Aligned_cols=333 Identities=17% Similarity=0.288 Sum_probs=295.3
Q ss_pred CccccCC-----h-hHHHHHHHh--cC----CchhHHHHHHHHHHHhccC----C-ceeeecCCccccceeeeeceEEec
Q 015120 1 MSKEVED-----S-ELADVAAVS--AG----NNYEVGNMIAEAMSKVGRK----G-VVTLEEGKSAENMLYVVEGMQFDR 63 (413)
Q Consensus 1 ~a~pv~~-----~-~L~~VA~ts--~~----~~~~la~lv~~Ai~~vg~~----~-~I~~~~g~s~~ds~~~i~G~~~~~ 63 (413)
+++|+++ . +|.+||+|+ ++ ..+.|++++++|+..+... . .|.+.+|++++|+ .+++|+++++
T Consensus 146 ~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds-~lv~G~v~~~ 224 (533)
T PTZ00212 146 IAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDS-YLEDGFILEK 224 (533)
T ss_pred hCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcccc-EEEEeEEEec
Confidence 4677764 5 799999865 33 4578999999999988532 1 2445789999999 5999999999
Q ss_pred ccccCccccCcccCeeeecCeeEEEecccC--------------CCHHHHHHH-----------HHHHHhcCCCEEEEec
Q 015120 64 GYISPYFVTDSEKMAVEYENCKLLLVDKKI--------------TNARDLINV-----------LEDAIRGAYPILIIAE 118 (413)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~Ili~d~~i--------------~~~~~~~~~-----------le~i~~~~~~lvI~~~ 118 (413)
++.++ |+++++||+|+++++++ ++++++..+ ++.+.+.|+++|++++
T Consensus 225 ~~~~~--------~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~ 296 (533)
T PTZ00212 225 KIGVG--------QPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQ 296 (533)
T ss_pred ccCCC--------CCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCC
Confidence 87552 68899999999999985 677776543 5678889999999999
Q ss_pred cCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEE---EcCCe
Q 015120 119 DIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDT 195 (413)
Q Consensus 119 ~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~---i~~~~ 195 (413)
+|++.++++|. + .+|+||+ +.++++|+|||++|||++++ +++++++++||+|+.|+ +++++
T Consensus 297 ~I~d~a~~~L~--~----~~I~avr-----~v~~~~l~rIa~~tGa~iis-----~l~~~~~~~LG~~~~v~~~~ig~~~ 360 (533)
T PTZ00212 297 LIYNYPEQLFA--E----AGIMAIE-----HADFDGMERLAAALGAEIVS-----TFDTPEKVKLGHCDLIEEIMIGEDK 360 (533)
T ss_pred CccHHHHHHHH--H----CCCEEEe-----cCCHHHHHHHHHHhCCEEee-----cCCCCCHHHccCCceEEEEEECCeE
Confidence 99999999853 4 5789998 44788999999999999999 89999999999999998 67889
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhc
Q 015120 196 TTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 275 (413)
Q Consensus 196 ~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~ 275 (413)
+++|++|..+ ++|||+|||+|+.+++|.||+++|||+++++++++
T Consensus 361 ~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~ 405 (533)
T PTZ00212 361 LIRFSGCAKG-----------------------------------EACTIVLRGASTHILDEAERSLHDALCVLSQTVKD 405 (533)
T ss_pred EEEEEccCCC-----------------------------------CEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999987653 79999999999999999999999999999999999
Q ss_pred C-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhc---cCCCceeeecCC
Q 015120 276 G-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLS---SDNHKYGYNAAT 351 (413)
Q Consensus 276 g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~---~~~~~~G~d~~~ 351 (413)
| +||||||+|+++|.+|++++.+..+++| +++++|++||+.||++||+|||+|+.+++.+|++ +++.++|+|+.+
T Consensus 406 ~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~-~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~ 484 (533)
T PTZ00212 406 TRVVLGGGCSEMLMANAVEELAKKVEGKKS-LAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEK 484 (533)
T ss_pred CCEeeCCCHHHHHHHHHHHHHHhhCCCHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccC
Confidence 9 9999999999999999999887888888 6999999999999999999999999999999984 346789999999
Q ss_pred CcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccC
Q 015120 352 GNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIK 394 (413)
Q Consensus 352 g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~ 394 (413)
|+++||++.|||||+.||+++|+.|+|+|++|||||++|...|
T Consensus 485 g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 527 (533)
T PTZ00212 485 GTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAP 527 (533)
T ss_pred CcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCC
Confidence 9999999999999999999999999999999999999998864
No 29
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-58 Score=484.59 Aligned_cols=334 Identities=19% Similarity=0.317 Sum_probs=292.3
Q ss_pred CccccCC-----h-hHHHHHHHhcC------CchhHHHHHHHHHHHhccC---Cceee--ecCCccccceeeeeceEEec
Q 015120 1 MSKEVED-----S-ELADVAAVSAG------NNYEVGNMIAEAMSKVGRK---GVVTL--EEGKSAENMLYVVEGMQFDR 63 (413)
Q Consensus 1 ~a~pv~~-----~-~L~~VA~ts~~------~~~~la~lv~~Ai~~vg~~---~~I~~--~~g~s~~ds~~~i~G~~~~~ 63 (413)
+++|+++ . +|.+||+||.+ +.+.|++++++|+..+... ..|.+ ..|++++|+ .+++|+++++
T Consensus 135 ~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s-~l~~G~v~~~ 213 (519)
T TIGR02341 135 SSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDS-YLDEGFLLEK 213 (519)
T ss_pred hcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccc-eEEeeEEEec
Confidence 4677752 4 79999998855 3467899999999988431 12333 479999999 5999999999
Q ss_pred ccccCccccCcccCeeeecCeeEEEecccCC--------------CHHHHHHH-----------HHHHHhcCCCEEEEec
Q 015120 64 GYISPYFVTDSEKMAVEYENCKLLLVDKKIT--------------NARDLINV-----------LEDAIRGAYPILIIAE 118 (413)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~Ili~d~~i~--------------~~~~~~~~-----------le~i~~~~~~lvI~~~ 118 (413)
.+.++ |+++++||+|+++++++. +++++..+ ++.+++.|++++++++
T Consensus 214 ~~~~~--------~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~ 285 (519)
T TIGR02341 214 KIGVN--------QPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQ 285 (519)
T ss_pred cCCCC--------CceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 87542 688999999999999754 24445433 5678889999999999
Q ss_pred cCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEE---EcCCe
Q 015120 119 DIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDT 195 (413)
Q Consensus 119 ~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~---i~~~~ 195 (413)
.|++.++++| .+ .+|++|++| ++++|+|||++|||++++ +++++++++||+|+.|+ +++++
T Consensus 286 ~I~~~~~~~l--~~----~~I~~v~~~-----~~~~l~~ia~~tGa~ii~-----~~~~~~~~~lG~~~~v~~~~ig~~~ 349 (519)
T TIGR02341 286 LIYNYPEQLF--AD----AGVMAIEHA-----DFEGIERLALVTGGEIVS-----TFDHPELVKLGSCDLIEEIMIGEDK 349 (519)
T ss_pred cCCHHHHHHH--HH----CCcEEEecC-----CHHHHHHHHHHhCCEEec-----ccccCCccccccCceEEEEEECCEE
Confidence 9999999985 44 679999977 577999999999999999 88999999999999987 46789
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhc
Q 015120 196 TTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 275 (413)
Q Consensus 196 ~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~ 275 (413)
+++|.+|+++ ++|||+|||+|+.+++|.||+++||++++++++++
T Consensus 350 ~~~~~~~~~~-----------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~ 394 (519)
T TIGR02341 350 LLKFSGVKLG-----------------------------------EACTIVLRGATQQILDESERSLHDALCVLSQTVKE 394 (519)
T ss_pred EEEEEcCCCC-----------------------------------CEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999988754 69999999999999999999999999999999999
Q ss_pred C-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc---CCCceeeecCC
Q 015120 276 G-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAAT 351 (413)
Q Consensus 276 g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~---~~~~~G~d~~~ 351 (413)
+ +||||||+|+++|.+|++++.+..+++| +++++|++||+.||++||+|||+|+.+++.+|++. ++.++|||+.+
T Consensus 395 ~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~ 473 (519)
T TIGR02341 395 SRTVLGGGCSEMLMSKAVAVEAQKVPGKEA-LAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEE 473 (519)
T ss_pred CCEEeCCCHHHHHHHHHHHHHhhcCCChHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCC
Confidence 7 9999999999999999999887888888 69999999999999999999999999999999863 46689999999
Q ss_pred CcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCC
Q 015120 352 GNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE 395 (413)
Q Consensus 352 g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~ 395 (413)
|+++||++.|||||+.||+++|+.|+|+|++|||||++|+++|+
T Consensus 474 g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 517 (519)
T TIGR02341 474 GEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAPR 517 (519)
T ss_pred CcccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999874
No 30
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-60 Score=496.06 Aligned_cols=370 Identities=45% Similarity=0.666 Sum_probs=278.3
Q ss_pred ccccCCh------hHHHHHHHhcCCchhHHHHHHHHHHHhcc-----CCceeee-cCCccccceeeeeceEEecccccCc
Q 015120 2 SKEVEDS------ELADVAAVSAGNNYEVGNMIAEAMSKVGR-----KGVVTLE-EGKSAENMLYVVEGMQFDRGYISPY 69 (413)
Q Consensus 2 a~pv~~~------~L~~VA~ts~~~~~~la~lv~~Ai~~vg~-----~~~I~~~-~g~s~~ds~~~i~G~~~~~~~~~~~ 69 (413)
|+|+++. ...++++.+++++++|++++++|+.+++. ++++.++ .|++..|+ ++++|++|++||.+||
T Consensus 131 a~~v~~~~~~~~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~-~vveG~~~dkg~~s~~ 209 (524)
T COG0459 131 AKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETEL-EVVEGMVFDKGYLSPY 209 (524)
T ss_pred hccCCcchhhhhhhhheeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccce-EEEeeEEecCCccCCC
Confidence 5677743 23444445577779999999999999998 7776554 55555555 8999999999999999
Q ss_pred cccCcccCe-eeecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCC
Q 015120 70 FVTDSEKMA-VEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFG 148 (413)
Q Consensus 70 ~~~~~~~~~-~~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g 148 (413)
| || ++++||+||++|++|...++.++ ++.....+.+++++++++..+++..++.|.+++..++++|+.||||
T Consensus 210 ~------~~~~~~e~~~Ili~d~~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~ 282 (524)
T COG0459 210 F------MPDKRLENPKILLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGID 282 (524)
T ss_pred C------CCccccccceEEEEccccccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCc
Confidence 8 56 78999999999998766555555 4444444445555555555555555555555555555555555555
Q ss_pred ccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEEEcCCeEEEEcCCCChhhHHHHHHHHHHHHHhh-chHHH
Q 015120 149 ERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENA-EQDYE 227 (413)
Q Consensus 149 ~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~-~~~~~ 227 (413)
+.++..|+|++++|+.++.++++++ ....+|.|..+...++.+....|.+. ..++++. .++|+
T Consensus 283 D~~~~~L~d~~Ilt~~~v~~~dl~~-----~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~~ 346 (524)
T COG0459 283 DLAKAYLEDIAILTGRRVKKEDLGE-----RLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDYD 346 (524)
T ss_pred HHHHHHHHhhcceecceecchhhHH-----HHHHccCceEEeecccCceeecCccc-----------cceEEEeeccchh
Confidence 5555555555555555555543320 22334444444444443333332210 1122232 45677
Q ss_pred HHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC-ccccCchHHHHHHHHHHHHhccCCC-hHHH
Q 015120 228 REKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDN-DEEK 305 (413)
Q Consensus 228 ~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~-~eq~ 305 (413)
++++.+|.+. .+++|||+|||+|+.+++|+||+++|||+++++++++| +|||||++|+++++.|++++.+.++ .+|
T Consensus 347 ~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~- 424 (524)
T COG0459 347 MEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQ- 424 (524)
T ss_pred hhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHH-
Confidence 7888888888 89999999999999999999999999999999999999 9999999999999999998544555 666
Q ss_pred HHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhccCC-CceeeecCCCcc-cccccCCccccchhHHHHHHHHHHHHHHH
Q 015120 306 VGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDN-HKYGYNAATGNY-EDLMAAGIIDPTKVVRCCLEHASSVAKTF 383 (413)
Q Consensus 306 ~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~~~-~~~G~d~~~g~i-~dm~~~gI~Dp~~vk~~~l~~A~e~a~~i 383 (413)
+|+++|++||+.||++||+|||+|+.+++.+|++..+ +++|||+.+|++ .||++.|||||+.||+++|++|+|+|++|
T Consensus 425 ~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~ll 504 (524)
T COG0459 425 LGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLL 504 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999998654 559999999999 78999999999999999999999999999
Q ss_pred hchhHHhhccCCCC
Q 015120 384 LMSDCVVVEIKEPE 397 (413)
Q Consensus 384 L~id~iI~~~~~~~ 397 (413)
||+|++|.+.|++.
T Consensus 505 L~~d~iI~~~~~~~ 518 (524)
T COG0459 505 LTIDDIIAAKPEEK 518 (524)
T ss_pred HHHHHhhccCCccc
Confidence 99999999998764
No 31
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.3e-59 Score=484.71 Aligned_cols=314 Identities=21% Similarity=0.292 Sum_probs=282.0
Q ss_pred CccccC--Ch-hHHHHHHHhcC------CchhHHHHHHHHHHHhccC--C---------c--eeeecCCccccceeeeec
Q 015120 1 MSKEVE--DS-ELADVAAVSAG------NNYEVGNMIAEAMSKVGRK--G---------V--VTLEEGKSAENMLYVVEG 58 (413)
Q Consensus 1 ~a~pv~--~~-~L~~VA~ts~~------~~~~la~lv~~Ai~~vg~~--~---------~--I~~~~g~s~~ds~~~i~G 58 (413)
+++|++ |. .|.+||+||.+ +++.|++++++|+..++.+ + . |++.+|+++.|+ ++++|
T Consensus 135 ~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds-~li~G 213 (480)
T cd03337 135 ISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDS-RVLDG 213 (480)
T ss_pred hccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhc-ccccc
Confidence 467887 66 89999999976 5679999999999999753 2 1 334579999998 79999
Q ss_pred eEEecccccCccccCcccCeeeecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccce
Q 015120 59 MQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALK 138 (413)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~ 138 (413)
++|++++.+|. |+++++||+|+++++++.. |||++++|++.++++|.. .+
T Consensus 214 vvi~k~~~~~~-------m~~~~~n~kIlll~~~Le~-----------------lvi~~k~I~d~al~~L~~------~~ 263 (480)
T cd03337 214 VMLNKDVTHPK-------MRRRIENPRIVLLDCPLEY-----------------LVITEKGVSDLAQHYLVK------AG 263 (480)
T ss_pred eEEeccCCCCC-------CCcEecCCCEEEEecCcce-----------------EEEeCCCccHHHHHHHHH------CC
Confidence 99999998864 8999999999999999765 999999999999999754 46
Q ss_pred eeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccc-eEEEE---cCCeEEEEcCCCChhhHHHHHHH
Q 015120 139 IAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNA-SKVVL---TKDTTTIVGDGSTQDAVSKRVAQ 214 (413)
Q Consensus 139 i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~-~~v~i---~~~~~~~~~~~~~~~~i~~ri~~ 214 (413)
|++|+ +.++++|+|||++|||++++ +++++++++||+| +.++. ++++++||++|+++
T Consensus 264 I~~v~-----~v~~~~L~rIa~~tGa~ii~-----~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~--------- 324 (480)
T cd03337 264 ITALR-----RVRKTDNNRIARACGATIVN-----RPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP--------- 324 (480)
T ss_pred cEEEE-----eCCHHHHHHHHHHHCCEEec-----chhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC---------
Confidence 89998 45899999999999999999 8899999999994 45442 56789999988765
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC-ccccCchHHHHHHHHHH
Q 015120 215 IRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVD 293 (413)
Q Consensus 215 l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vVpGGGa~e~~ls~~L~ 293 (413)
+.+||+|||+|+.+++|.||+++||+++++++++++ +|||||++||++|.+|+
T Consensus 325 --------------------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~ 378 (480)
T cd03337 325 --------------------------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALS 378 (480)
T ss_pred --------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHH
Confidence 699999999999999999999999999999999997 99999999999999999
Q ss_pred HHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc---C-CCceeeecCCCcccccccCCccccchhH
Q 015120 294 AIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---D-NHKYGYNAATGNYEDLMAAGIIDPTKVV 369 (413)
Q Consensus 294 ~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~---~-~~~~G~d~~~g~i~dm~~~gI~Dp~~vk 369 (413)
+++.+.++++| +++++|++||++||++||+|||+|+.+++.+|++. + +.++|+|+.+|+++||++.|||||+.+|
T Consensus 379 ~~~~~~~~~~~-~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk 457 (480)
T cd03337 379 EKAKSIEGVEQ-WPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVK 457 (480)
T ss_pred HHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHH
Confidence 98888889998 69999999999999999999999999999999862 3 5679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhHHhh
Q 015120 370 RCCLEHASSVAKTFLMSDCVVV 391 (413)
Q Consensus 370 ~~~l~~A~e~a~~iL~id~iI~ 391 (413)
+++|+.|+|+|++|||||++|.
T Consensus 458 ~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 458 AQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred HHHHHHHHHHHHHHhhhhheec
Confidence 9999999999999999999985
No 32
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-59 Score=447.89 Aligned_cols=336 Identities=18% Similarity=0.278 Sum_probs=304.9
Q ss_pred hHHHHHHHh------cCCchhHHHHHHHHHHHhccC------CceeeecCCccccceeeeeceEEecccccCccccCccc
Q 015120 9 ELADVAAVS------AGNNYEVGNMIAEAMSKVGRK------GVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEK 76 (413)
Q Consensus 9 ~L~~VA~ts------~~~~~~la~lv~~Ai~~vg~~------~~I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~ 76 (413)
.|++.|.|+ .+..++|++++++|+..++.+ | |++.+||+++||. +++|+.|++.|.+..| ++
T Consensus 154 lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIG-IKKV~GG~~~dS~-lv~GVAFkKtFsYAGf----Eq 227 (543)
T KOG0361|consen 154 LLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIG-IKKVPGGAMEDSL-LVNGVAFKKTFSYAGF----EQ 227 (543)
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcc-eeecCCCccchhh-hccceeeeehccccch----hh
Confidence 688899888 346789999999999999853 3 7778999999995 9999999999988765 78
Q ss_pred CeeeecCeeEEEeccc-------------CCCHHHHHHH-----------HHHHHhcCCCEEEEeccCchHHHHHHHHHh
Q 015120 77 MAVEYENCKLLLVDKK-------------ITNARDLINV-----------LEDAIRGAYPILIIAEDIEQEALATLVVNK 132 (413)
Q Consensus 77 ~~~~~~~~~Ili~d~~-------------i~~~~~~~~~-----------le~i~~~~~~lvI~~~~i~~~al~~L~~n~ 132 (413)
+|+.+.||+|++++.+ +.++++++.+ |+++..+|.++|+..-.|.|.|-++|. +
T Consensus 228 qPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFA--d 305 (543)
T KOG0361|consen 228 QPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFA--D 305 (543)
T ss_pred CccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhh--c
Confidence 9999999999999984 6788888875 668888999999999999999988864 3
Q ss_pred hcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEE---EcCCeEEEEcCCCChhhHH
Q 015120 133 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVS 209 (413)
Q Consensus 133 ~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~ 209 (413)
+++ +| .|++..+||.|...+|||.+.+ +..++.++.||.|..++ +++++|-+|+||+..
T Consensus 306 -rdi--FC------AGRV~~eDl~Rv~~acGGsi~t-----t~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~a---- 367 (543)
T KOG0361|consen 306 -RDI--FC------AGRVPEEDLNRVMQACGGSIQT-----TVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKA---- 367 (543)
T ss_pred -cCc--ee------cCcCCHHHHHHHHHhcCcchhh-----hhhhcchhhcchhhhHHHHhhcchhhhhhcCCCcc----
Confidence 332 23 4678899999999999999999 88999999999999998 679999999999965
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC-ccccCchHHHHH
Q 015120 210 KRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRL 288 (413)
Q Consensus 210 ~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vVpGGGa~e~~l 288 (413)
++||+++||+-++.++|.+|++|||++++|.|+++. +|+|||++||++
T Consensus 368 -------------------------------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMEl 416 (543)
T KOG0361|consen 368 -------------------------------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMEL 416 (543)
T ss_pred -------------------------------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehH
Confidence 799999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhc---cCCCceeeecCCCcccccccCCcccc
Q 015120 289 SSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLS---SDNHKYGYNAATGNYEDLMAAGIIDP 365 (413)
Q Consensus 289 s~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~---~~~~~~G~d~~~g~i~dm~~~gI~Dp 365 (413)
|+.|++|+.++.+++| +-+.+|++|||.||++||+|||+|..+++.||+. +|..|+|+|..++.+.|+++.+||||
T Consensus 417 Sk~lRd~S~ti~gK~q-~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP 495 (543)
T KOG0361|consen 417 SKYLRDYSRTIAGKQQ-LFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEP 495 (543)
T ss_pred HHHHHHhhcccCcHHH-HHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhHHHhhccCh
Confidence 9999999999999999 5899999999999999999999999999999985 57899999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhchhHHhhccCCCCCCCCC
Q 015120 366 TKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 402 (413)
Q Consensus 366 ~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~~~ 402 (413)
..||++++.+|+|+|++||.+|+.|+..+...++|.+
T Consensus 496 ~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~~p~~ 532 (543)
T KOG0361|consen 496 SIVKINAITAATEAACLILSVDETIKNPKSQSAPPSA 532 (543)
T ss_pred HHHHHHHHHHHHHhhhheEehhhhhcCCcccCCCCCc
Confidence 9999999999999999999999999988866655443
No 33
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.7e-58 Score=474.91 Aligned_cols=309 Identities=22% Similarity=0.281 Sum_probs=276.7
Q ss_pred hHHHHHHHh-----cCCchhHHHHHHHHHHHhccC--Cc-------eeeecCCccccceeeeeceEEecccccCccccCc
Q 015120 9 ELADVAAVS-----AGNNYEVGNMIAEAMSKVGRK--GV-------VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDS 74 (413)
Q Consensus 9 ~L~~VA~ts-----~~~~~~la~lv~~Ai~~vg~~--~~-------I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~ 74 (413)
.|..+++++ .+++++|++++++|+..++.+ |. |.+..|++++|+ ++++|++|++.+.+
T Consensus 140 ~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds-~lv~Giv~~~~~~~------- 211 (472)
T cd03341 140 EVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDS-KVVRGMVFKREPEG------- 211 (472)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccc-eEEeeEEEccccCC-------
Confidence 677887777 246889999999999999864 32 333589999999 79999999875432
Q ss_pred ccCeeeecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhh
Q 015120 75 EKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQY 154 (413)
Q Consensus 75 ~~~~~~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~ 154 (413)
++++++||+|+++++++.. |++|||++++|++.++++ +++ .+|+||++| ++++
T Consensus 212 --~~~~~~n~~Ili~~~~Le~--------------g~~lvi~~~~I~d~al~~--l~~----~~I~av~~~-----~~~~ 264 (472)
T cd03341 212 --SVKRVKKAKVAVFSCPFDI--------------GVNVIVAGGSVGDLALHY--CNK----YGIMVIKIN-----SKFE 264 (472)
T ss_pred --CceeccCCcEEEEeccccC--------------CCeEEEECCCCCHHHHHH--HHH----CCeEEEEeC-----CHHH
Confidence 4578999999999999876 899999999999999998 455 689999977 5889
Q ss_pred HHHHHHHhCCeEeecCcCccccCCCCcccccceEEEEc---CCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHH
Q 015120 155 LDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKL 231 (413)
Q Consensus 155 le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l 231 (413)
|+|||++|||++++ +++++++++||+|+.|++. ++++++|++|++.
T Consensus 265 Le~Ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~-------------------------- 313 (472)
T cd03341 265 LRRLCRTVGATPLP-----RLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKED-------------------------- 313 (472)
T ss_pred HHHHHHHhCCEEec-----ccccCCHhHCCCceEEEEEEECCeeEEEEEccCCC--------------------------
Confidence 99999999999999 7888899999999999964 4899999887641
Q ss_pred HHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHH
Q 015120 232 NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADI 310 (413)
Q Consensus 232 ~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~ 310 (413)
++++||+|||+|+.+++|+||+++|||+++++++++| +|||||++|++++.+|++++.+..+.++ +++++
T Consensus 314 --------~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~-~~~~~ 384 (472)
T cd03341 314 --------SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQ-YAIKK 384 (472)
T ss_pred --------CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHH-HHHHH
Confidence 4799999999999999999999999999999999999 9999999999999999998877788887 69999
Q ss_pred HHHHHhHHHHHHHHhcCCCchhhHHhhhc---cCCCceeeecCCC--cccccccCCccccchhHHHHHHHHHHHHHHHhc
Q 015120 311 VKRALCYPLKLIAKNAGVNGSVVSEKVLS---SDNHKYGYNAATG--NYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLM 385 (413)
Q Consensus 311 ~a~AL~~ip~~L~~NaG~d~~~i~~kl~~---~~~~~~G~d~~~g--~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~ 385 (413)
|++||+.||++|++|||+|+.+++.+|+. .++.++|||+.+| +++||++.|||||+.||+++|+.|+|+|++|||
T Consensus 385 ~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ 464 (472)
T cd03341 385 FAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLR 464 (472)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999975 3456899999999 999999999999999999999999999999999
Q ss_pred hhHHhhc
Q 015120 386 SDCVVVE 392 (413)
Q Consensus 386 id~iI~~ 392 (413)
||++|.+
T Consensus 465 id~ii~~ 471 (472)
T cd03341 465 VDQIIMA 471 (472)
T ss_pred hcceeec
Confidence 9999865
No 34
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.1e-57 Score=471.03 Aligned_cols=314 Identities=36% Similarity=0.523 Sum_probs=283.6
Q ss_pred Cccc--cCCh-hHHHHHHHhcC------CchhHHHHHHHHHHHhcc------CCceee--ecCCccccceeeeeceEEec
Q 015120 1 MSKE--VEDS-ELADVAAVSAG------NNYEVGNMIAEAMSKVGR------KGVVTL--EEGKSAENMLYVVEGMQFDR 63 (413)
Q Consensus 1 ~a~p--v~~~-~L~~VA~ts~~------~~~~la~lv~~Ai~~vg~------~~~I~~--~~g~s~~ds~~~i~G~~~~~ 63 (413)
+++| +++. +|.+||+||.+ ++++|++++++|+..++. .+.|++ ..|+++.|+ ++++|++|++
T Consensus 127 ~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds-~li~Gi~~~~ 205 (464)
T cd00309 127 IAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDS-ELVVGMVFDK 205 (464)
T ss_pred hcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcccc-eeeeeEEEec
Confidence 4667 4466 89999999988 899999999999999987 455544 579999999 6999999999
Q ss_pred ccccCccccCcccCeeeecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEee
Q 015120 64 GYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALK 143 (413)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~ 143 (413)
+|.+|+ |+++++||+|+++++++.. |||++++|++.++++|. + .+|++|+
T Consensus 206 ~~~~~~-------m~~~~~n~~Ili~~~~Le~-----------------lIi~~~~I~~~al~~L~--~----~~I~~v~ 255 (464)
T cd00309 206 GYLSPY-------MPKRLENAKILLLDCKLEY-----------------VVIAEKGIDDEALHYLA--K----LGIMAVR 255 (464)
T ss_pred CCCCCC-------CceeecCceEEEEecCcce-----------------EEecCCCcCHHHHHHHH--H----CCeEEEE
Confidence 999997 5889999999999999876 88888889999999965 3 5789998
Q ss_pred CCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEEE---cCCeEEEEcCCCChhhHHHHHHHHHHHHH
Q 015120 144 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL---TKDTTTIVGDGSTQDAVSKRVAQIRTLIE 220 (413)
Q Consensus 144 ~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~ri~~l~~~l~ 220 (413)
+ .++++|+|||.+|||++++ +++++++++||+|+.|++ +++++++|.++.++
T Consensus 256 ~-----~~~~~L~~Ia~~tGa~ii~-----~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~--------------- 310 (464)
T cd00309 256 R-----VRKEDLERIAKATGATIVS-----RLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG--------------- 310 (464)
T ss_pred e-----CCHHHHHHHHHHhCCEEec-----ccccCCcccCccccEEEEEEEcCeeEEEEEecCCC---------------
Confidence 4 5899999999999999999 788899999999999985 45678888876643
Q ss_pred hhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC-ccccCchHHHHHHHHHHHHhccC
Q 015120 221 NAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETL 299 (413)
Q Consensus 221 ~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vVpGGGa~e~~ls~~L~~~~~~~ 299 (413)
+.|||+|||+|+.+++|+||+++||+++++++++++ +|||||++||+++++|++++.+.
T Consensus 311 --------------------~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~ 370 (464)
T cd00309 311 --------------------KVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTL 370 (464)
T ss_pred --------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhccc
Confidence 699999999999999999999999999999999997 99999999999999999998877
Q ss_pred CChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc---CCCceeeecCCCcccccccCCccccchhHHHHHHHH
Q 015120 300 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHA 376 (413)
Q Consensus 300 ~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~---~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A 376 (413)
++.+| +++++|++||+.||++|++|||+|+.+++.+|++. +.+++|+|+.+|++.||++.|||||+.||+++|+.|
T Consensus 371 ~~~~~-~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A 449 (464)
T cd00309 371 PGKEQ-LGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSA 449 (464)
T ss_pred chHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHH
Confidence 88887 69999999999999999999999999999999863 345789999999999999999999999999999999
Q ss_pred HHHHHHHhchhHHhh
Q 015120 377 SSVAKTFLMSDCVVV 391 (413)
Q Consensus 377 ~e~a~~iL~id~iI~ 391 (413)
+|+|++|||||++|+
T Consensus 450 ~e~a~~iL~id~ii~ 464 (464)
T cd00309 450 TEAASLILTIDDIIV 464 (464)
T ss_pred HHHHHHHHhHHHHhC
Confidence 999999999999984
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.8e-55 Score=458.23 Aligned_cols=332 Identities=28% Similarity=0.428 Sum_probs=297.2
Q ss_pred ccccCC--hhHHHHHHHhcCCc------hhHHHHHHHHHHHh------ccCCceeeecCCccccceeeeeceEEeccccc
Q 015120 2 SKEVED--SELADVAAVSAGNN------YEVGNMIAEAMSKV------GRKGVVTLEEGKSAENMLYVVEGMQFDRGYIS 67 (413)
Q Consensus 2 a~pv~~--~~L~~VA~ts~~~~------~~la~lv~~Ai~~v------g~~~~I~~~~g~s~~ds~~~i~G~~~~~~~~~ 67 (413)
|+|+++ ..|+++|+|+.+.+ ++|++++++|+..+ +..++++ ..|++++|+ ++++|++|++++.+
T Consensus 109 s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~i~~-i~g~~~~dS-~li~Giv~~~~~~~ 186 (485)
T PF00118_consen 109 SIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIKIIK-IPGGSISDS-ELINGIVLDKGFSS 186 (485)
T ss_dssp SEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEEEEE-EESSSSGGE-EEESEEEESSSBSS
T ss_pred hccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccchhhhh-hcccccccc-ccccceeeeccccc
Confidence 567774 38999999999877 89999999999444 3334444 678888998 69999999999999
Q ss_pred CccccCcccCeeeecCeeEEEecccCCCHHH-----------------------HHHHHHHHHhcCCCEEEEeccCchHH
Q 015120 68 PYFVTDSEKMAVEYENCKLLLVDKKITNARD-----------------------LINVLEDAIRGAYPILIIAEDIEQEA 124 (413)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~Ili~d~~i~~~~~-----------------------~~~~le~i~~~~~~lvI~~~~i~~~a 124 (413)
+. |++++++|+|+++++++..... +.++++++.+.|+++||++++|++.+
T Consensus 187 ~~-------~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~ 259 (485)
T PF00118_consen 187 PN-------MPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEA 259 (485)
T ss_dssp TT-------SBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHH
T ss_pred cc-------cccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeeccccccc
Confidence 73 7888999999999998776655 78889999999999999999999999
Q ss_pred HHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEE---EEcCCeEEEEcC
Q 015120 125 LATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKV---VLTKDTTTIVGD 201 (413)
Q Consensus 125 l~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v---~i~~~~~~~~~~ 201 (413)
+++|..+ ++.+++ ++++++|++|+.+||+++++ ++++++++++|+|+.+ .+++++++++++
T Consensus 260 l~~l~~~------~I~~i~-----~v~~~~l~~i~~~tg~~ii~-----~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~ 323 (485)
T PF00118_consen 260 LQYLNKN------GILVIR-----RVSKEDLERIARATGASIIS-----SLDDLSDEDLGFCKSVEEREIGNKKYIFIEG 323 (485)
T ss_dssp HHHHHHC------THEEES-----SEHHHHHHHHHHHHTSBEBS-----SCGGSTGGGSEEEEEEEEEEETSSEEEEEEE
T ss_pred chhhhhh------hhhccc-----cchHHHHHhhhcccCCcEec-----ccccccchhhhhhhhhhhccccccccccccc
Confidence 9997644 456666 56899999999999999999 8888888889999999 578999999983
Q ss_pred --CCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC-cc
Q 015120 202 --GSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IV 278 (413)
Q Consensus 202 --~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV 278 (413)
+. +++.+||+|||+|+.+++|+|++++||+++++++++++ +|
T Consensus 324 ~~~~-----------------------------------~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vv 368 (485)
T PF00118_consen 324 IGCL-----------------------------------SSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVV 368 (485)
T ss_dssp HSES-----------------------------------SSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEE
T ss_pred cccc-----------------------------------ccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCcee
Confidence 33 35799999999999999999999999999999999988 99
Q ss_pred ccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhc--cCCCceeeecCCCcccc
Q 015120 279 VGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLS--SDNHKYGYNAATGNYED 356 (413)
Q Consensus 279 pGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~--~~~~~~G~d~~~g~i~d 356 (413)
||||++|++++++|++++.+.++.++ +++++|++||+.||++|++|||+|+.++++++++ ..+.++|||+.+|+++|
T Consensus 369 pGGG~~e~~l~~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~ 447 (485)
T PF00118_consen 369 PGGGATELHLSKALRKYAKSLSGKEQ-LAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTGEIVD 447 (485)
T ss_dssp ETTTHHHHHHHHHHHHHHHCSSSHHH-HHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTTEEEE
T ss_pred ecCcchhhhhhhhHHHhhhcccCchh-hhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCccCCceec
Confidence 99999999999999999888888877 6999999999999999999999999999999987 34669999999999999
Q ss_pred cccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccC
Q 015120 357 LMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIK 394 (413)
Q Consensus 357 m~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~ 394 (413)
|++.|||||+.+|+++|+.|+|+|++|||||++|.++|
T Consensus 448 ~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 448 MKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp TTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998865
No 36
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-53 Score=403.06 Aligned_cols=330 Identities=19% Similarity=0.309 Sum_probs=294.6
Q ss_pred hHHHHHHHh------cCCchhHHHHHHHHHHHhccCC---c--eeeecCCccccceeeeeceEEecccccCccccCcccC
Q 015120 9 ELADVAAVS------AGNNYEVGNMIAEAMSKVGRKG---V--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKM 77 (413)
Q Consensus 9 ~L~~VA~ts------~~~~~~la~lv~~Ai~~vg~~~---~--I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~ 77 (413)
+|.++|+|. +.+.++|+++.++|+.++.-.+ . |-++.||+++||+ +-+|+.+++.+-. ++
T Consensus 153 DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSf-LDeGFlL~K~igv--------~q 223 (527)
T KOG0363|consen 153 DLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSF-LDEGFLLDKKIGV--------NQ 223 (527)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCcccccc-ccccceeccccCC--------CC
Confidence 899999987 4578999999999999986431 1 3337999999996 9999999987644 26
Q ss_pred eeeecCeeEEEeccc--------------CCCHHHH-----------HHHHHHHHhcCCCEEEEeccCchHHHHHHHHHh
Q 015120 78 AVEYENCKLLLVDKK--------------ITNARDL-----------INVLEDAIRGAYPILIIAEDIEQEALATLVVNK 132 (413)
Q Consensus 78 ~~~~~~~~Ili~d~~--------------i~~~~~~-----------~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~ 132 (413)
|++++||+||+.+.+ +++..++ ..-+++|.++|+|++|..+-|.+..+++|..
T Consensus 224 pkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~d-- 301 (527)
T KOG0363|consen 224 PKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFAD-- 301 (527)
T ss_pred cccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhh--
Confidence 889999999999986 3333222 2347899999999999999999999998643
Q ss_pred hcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEE---EcCCeEEEEcCCCChhhHH
Q 015120 133 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVS 209 (413)
Q Consensus 133 ~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~ 209 (413)
.+|++|. +..-+-+|||+.+|||.+++ ++++++...||+|+.++ +++|++..|.|+.
T Consensus 302 ----agi~aIE-----HADFdGiERLalvtGGeI~S-----TFd~p~~~klG~C~~IeeimiGed~li~FSGv~------ 361 (527)
T KOG0363|consen 302 ----AGIMAIE-----HADFDGIERLALVTGGEIVS-----TFDNPELVKLGECDLIEEIMIGEDKLIKFSGVK------ 361 (527)
T ss_pred ----cCcceee-----cccchhHHHHhhcccceeee-----ccCCcchhccccchhhHHHhcCccceeeecccc------
Confidence 5678887 55667899999999999999 99999999999999997 6899999999876
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC-ccccCchHHHHH
Q 015120 210 KRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRL 288 (413)
Q Consensus 210 ~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vVpGGGa~e~~l 288 (413)
.|..|||++||+|++++||.||++|||||++...+++. +|.||||+||.+
T Consensus 362 -----------------------------~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~M 412 (527)
T KOG0363|consen 362 -----------------------------LGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLM 412 (527)
T ss_pred -----------------------------cccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHH
Confidence 35699999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc---CCCceeeecCCCcccccccCCcccc
Q 015120 289 SSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAATGNYEDLMAAGIIDP 365 (413)
Q Consensus 289 s~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~---~~~~~G~d~~~g~i~dm~~~gI~Dp 365 (413)
++++.+++..+++++. .++++|++||..+|.+||.|||||+.+++++|++. +...+|+|+.+|++.||.+.||+|.
T Consensus 413 a~av~~~A~~~pGkea-~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es 491 (527)
T KOG0363|consen 413 AKAVDKEAQETPGKEA-LAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVES 491 (527)
T ss_pred HHHHHHHHhhCCchhh-HHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHH
Confidence 9999999999999998 69999999999999999999999999999999974 6789999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhchhHHhhccCCCCCC
Q 015120 366 TKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA 399 (413)
Q Consensus 366 ~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~ 399 (413)
+.||.+.+.+|.|+|.+|||+|.||.+.|+.+.+
T Consensus 492 ~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r~~ 525 (527)
T KOG0363|consen 492 LKVKQAVVSSASEAAEMILRVDNIIKAAPRERER 525 (527)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhcCCccccc
Confidence 9999999999999999999999999999987655
No 37
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-50 Score=383.89 Aligned_cols=332 Identities=20% Similarity=0.275 Sum_probs=292.3
Q ss_pred CccccC--Ch-hHHHHHHHhcC------CchhHHHHHHHHHHHhcc-C----------CceeeecCCccccceeeeeceE
Q 015120 1 MSKEVE--DS-ELADVAAVSAG------NNYEVGNMIAEAMSKVGR-K----------GVVTLEEGKSAENMLYVVEGMQ 60 (413)
Q Consensus 1 ~a~pv~--~~-~L~~VA~ts~~------~~~~la~lv~~Ai~~vg~-~----------~~I~~~~g~s~~ds~~~i~G~~ 60 (413)
|+.|++ |+ .|.+-|+||.| +...|+.+.++|+..+-. + .+|+ +.||.++|+ ++++|++
T Consensus 145 m~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivk-klGgtvdDt-e~i~glv 222 (534)
T KOG0358|consen 145 MSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVK-KLGGTVDDT-ELIKGLV 222 (534)
T ss_pred cCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHH-hhCCccchh-hhhcceE
Confidence 677887 66 69999999954 778999999999997753 1 2233 689999998 8999999
Q ss_pred EecccccCccccCcccCeeeecCeeEEEeccc-------------CCCHHHHHH-----------HHHHHHhcCCCEEEE
Q 015120 61 FDRGYISPYFVTDSEKMAVEYENCKLLLVDKK-------------ITNARDLIN-----------VLEDAIRGAYPILII 116 (413)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~-------------i~~~~~~~~-----------~le~i~~~~~~lvI~ 116 (413)
|.+...... .|+++++++|-++.+. ++++.++.. ++++|++.|.|++++
T Consensus 223 l~~~~~~~~-------gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLli 295 (534)
T KOG0358|consen 223 LTQKASKSA-------GPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLI 295 (534)
T ss_pred EeeecccCC-------CcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 998755432 5788999999999884 456666543 577899999999999
Q ss_pred eccC-----chHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEEE
Q 015120 117 AEDI-----EQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVL 191 (413)
Q Consensus 117 ~~~i-----~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i 191 (413)
|++| +|.++++ ++| ++|++|+ ++.|+++|.+++.+|++++. +++.++++.||++..++.
T Consensus 296 QKSILRdavsDLAlHf--L~k----lkimvik-----dieRediefick~l~c~Pia-----~id~f~~d~Lg~adlveE 359 (534)
T KOG0358|consen 296 QKSILRDAVSDLALHF--LAK----LKIMVIK-----DIEREDIEFICKTLGCKPIA-----DIDHFTADKLGSADLVEE 359 (534)
T ss_pred eHHHHHHHHHHHHHHH--HHh----CcEEEEc-----cccHhhHHHHHhhcCCeecc-----hhhhcChhhcCcchhhhh
Confidence 9988 4555555 456 7899999 77999999999999999999 999999999999999984
Q ss_pred ----cCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHH
Q 015120 192 ----TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALN 267 (413)
Q Consensus 192 ----~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~ 267 (413)
++.+++-+.|+.++ |..++|++||.++.+++|.+|++|||||
T Consensus 360 ~~~~G~gkivk~tg~~n~----------------------------------g~tvsil~RGsn~lvleEaeRSlhDALC 405 (534)
T KOG0358|consen 360 TDSSGEGKIVKITGIQNA----------------------------------GRTVSILLRGSNKLVLEEAERSLHDALC 405 (534)
T ss_pred cccCCCccEEEEEEeecC----------------------------------CCceEEEEecCchhhhHHHhhhhhhhhH
Confidence 35588888877764 6899999999999999999999999999
Q ss_pred HHHHhhhcC-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhc---cCCC
Q 015120 268 ATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLS---SDNH 343 (413)
Q Consensus 268 a~k~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~---~~~~ 343 (413)
++|..++.. ++||||+.||+++..|.+++.+.+|.+++ .+++|++|||.||.+||+|||++|..++.+|++ +|+.
T Consensus 406 VirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~y-c~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~ 484 (534)
T KOG0358|consen 406 VIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAY-CWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEK 484 (534)
T ss_pred HHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhH-HHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCc
Confidence 999999998 99999999999999999999999999985 999999999999999999999999999999997 5779
Q ss_pred ceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhc
Q 015120 344 KYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE 392 (413)
Q Consensus 344 ~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~ 392 (413)
+.|+|++.|.+.||++..|+.|+.|..++++.|+|++.+||+||+|+..
T Consensus 485 ~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 485 NAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred ccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 9999999999999999999999999999999999999999999999864
No 38
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-49 Score=386.86 Aligned_cols=340 Identities=22% Similarity=0.285 Sum_probs=296.8
Q ss_pred ccccC--Ch-hHHHHHHHh------cCCchhHHHHHHHHHHHhcc---CC---------ceeeecCCccccceeeeeceE
Q 015120 2 SKEVE--DS-ELADVAAVS------AGNNYEVGNMIAEAMSKVGR---KG---------VVTLEEGKSAENMLYVVEGMQ 60 (413)
Q Consensus 2 a~pv~--~~-~L~~VA~ts------~~~~~~la~lv~~Ai~~vg~---~~---------~I~~~~g~s~~ds~~~i~G~~ 60 (413)
+.|+| ++ -|.++|++| .+..++|++++++|+..+.. +| .|-+-+|.|..||+ ++.|+.
T Consensus 140 ~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~-l~~Gya 218 (545)
T KOG0360|consen 140 SKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESM-LLPGYA 218 (545)
T ss_pred eeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhhe-eeccee
Confidence 45777 44 799999988 45678999999999998753 11 14446899999995 999999
Q ss_pred EecccccCccccCcccCeeeecCeeEEEeccc-------------CCCHHHHHHH-----------HHHHHhcCCCEEEE
Q 015120 61 FDRGYISPYFVTDSEKMAVEYENCKLLLVDKK-------------ITNARDLINV-----------LEDAIRGAYPILII 116 (413)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~-------------i~~~~~~~~~-----------le~i~~~~~~lvI~ 116 (413)
+++..++.. ||.++.|+||+++|+. |++++++.++ ++++...|+|+|++
T Consensus 219 Lnc~~asq~-------m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLt 291 (545)
T KOG0360|consen 219 LNCSVASQM-------MPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLT 291 (545)
T ss_pred eeccHhhhc-------cccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEE
Confidence 999988754 8999999999999995 5677776654 56888999999999
Q ss_pred eccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccc-cCCCCcccccceEEE---Ec
Q 015120 117 AEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLAL-DKVGKEVLGNASKVV---LT 192 (413)
Q Consensus 117 ~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l-~~~~~~~lG~~~~v~---i~ 192 (413)
+++|||.++++|+. .+++||| |..+++|++||++||++++++..++.- +.+.+.++|+|++|. ++
T Consensus 292 t~gIddmc~K~~ve------agamAVr-----R~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~ 360 (545)
T KOG0360|consen 292 TGGIDDMCLKYFVE------AGAMAVR-----RCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIG 360 (545)
T ss_pred cCCccHHHHHHHHH------cchhhhH-----HHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcc
Confidence 99999999999653 5688888 779999999999999999994433322 356788999999997 67
Q ss_pred CCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHh
Q 015120 193 KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA 272 (413)
Q Consensus 193 ~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a 272 (413)
+|+++++.+.+. ..|+|++||+|++.+||++|++|||||++|..
T Consensus 361 dde~ilikg~ka------------------------------------~~aSiILrgaNd~~~DEmers~hdaL~Vlkrt 404 (545)
T KOG0360|consen 361 DDELILIKGTKA------------------------------------TSASIILRGANDFMLDEMERSLHDALCVLKRT 404 (545)
T ss_pred cceeEEeccCcc------------------------------------ceeeEEEecCCcccHhhhccchhhHHHHHHHH
Confidence 999999986442 37999999999999999999999999999999
Q ss_pred hhcC-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc-----------
Q 015120 273 VEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS----------- 340 (413)
Q Consensus 273 l~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~----------- 340 (413)
++++ +|||||++|.+++-+|+.|+.+..++|| +++..|++||.++|++|+-||+.|+.++++++++.
T Consensus 405 Les~~vvpGGG~vE~aLs~yle~~a~s~~srE~-laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~ 483 (545)
T KOG0360|consen 405 LESKSVVPGGGAVETALSIYLENFATSVGSREQ-LAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRL 483 (545)
T ss_pred hccCccccCccHHHHHHHHHHHhhcccCccHHH-HHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccc
Confidence 9999 9999999999999999999999999999 59999999999999999999999999999999862
Q ss_pred CCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCCCC
Q 015120 341 DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE 397 (413)
Q Consensus 341 ~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~ 397 (413)
...|+|+|+.+|++.|.++.|+++|..+|..+|+.|+|+|..+||+|++|.-.|..+
T Consensus 484 ~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~ 540 (545)
T KOG0360|consen 484 LLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQ 540 (545)
T ss_pred cchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCcccc
Confidence 236899999999999999999999999999999999999999999999998766543
No 39
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-47 Score=373.54 Aligned_cols=335 Identities=20% Similarity=0.243 Sum_probs=296.2
Q ss_pred ccccC--Ch-hHHHHHHHh------cCCchhHHHHHHHHHHHhccC-Cc---------eeeecCCccccceeeeeceEEe
Q 015120 2 SKEVE--DS-ELADVAAVS------AGNNYEVGNMIAEAMSKVGRK-GV---------VTLEEGKSAENMLYVVEGMQFD 62 (413)
Q Consensus 2 a~pv~--~~-~L~~VA~ts------~~~~~~la~lv~~Ai~~vg~~-~~---------I~~~~g~s~~ds~~~i~G~~~~ 62 (413)
+.|+| |. .+.+|...| +...+..+++..+|+..++.+ |- +++.+|+.++|| ++++|+.++
T Consensus 139 ~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s-~vl~Gv~~n 217 (527)
T KOG0364|consen 139 SIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDS-CVLKGVMIN 217 (527)
T ss_pred cccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccccccc-ceecceeec
Confidence 45666 55 777776666 457788999999999999864 21 455799999999 599999999
Q ss_pred cccccCccccCcccCeeeecCeeEEEecccCC------------------------CHHHHHHHHHHHHhcCCCEEEEec
Q 015120 63 RGYISPYFVTDSEKMAVEYENCKLLLVDKKIT------------------------NARDLINVLEDAIRGAYPILIIAE 118 (413)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~i~------------------------~~~~~~~~le~i~~~~~~lvI~~~ 118 (413)
+...||. |+..++||+|+++|+++. .-+++..+++.|....++|||+.+
T Consensus 218 kdv~Hpk-------mrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitek 290 (527)
T KOG0364|consen 218 KDVTHPK-------MRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEK 290 (527)
T ss_pred cccCcHH-------HHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEecc
Confidence 9999986 788899999999999731 123455567788889999999999
Q ss_pred cCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCccccc-ceEEEE---cCC
Q 015120 119 DIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGN-ASKVVL---TKD 194 (413)
Q Consensus 119 ~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~-~~~v~i---~~~ 194 (413)
++++.+.++|.. .++.++| +.++.|-.|++.+||+++++ +.+++.+.+.|. |+.+++ +++
T Consensus 291 G~sdla~hyl~k------~~iT~~r-----r~rKtDn~ria~acga~iv~-----rpedl~e~dvGt~agLf~~kK~gde 354 (527)
T KOG0364|consen 291 GVSDLAQHYLLK------ANITAIR-----RLRKTDNNRIARACGARIVN-----RPEDLPERDVGTGAGLFEVKKIGDE 354 (527)
T ss_pred chhHHHHHHHHh------cCchhhh-----hhhccccchhhhhcCceecc-----ChhhCchhccCcccceeeeeccCch
Confidence 999999999764 3466666 77999999999999999999 999999999997 888884 688
Q ss_pred eEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhh
Q 015120 195 TTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVE 274 (413)
Q Consensus 195 ~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~ 274 (413)
+|+||+.|.+| +.|||++||||..+++|.+|.+.||+.+.|+.+-
T Consensus 355 yf~f~~~Ck~p-----------------------------------kaCtillrg~skdil~e~ernlqda~~varn~ii 399 (527)
T KOG0364|consen 355 YFTFFTDCKEP-----------------------------------KACTILLRGPSKDILNEVERNLQDAMGVARNVII 399 (527)
T ss_pred hhhhhhhcCCC-----------------------------------cceEEEeccCchhHHHHHHHHhhhHHHHHHHhcc
Confidence 99999999998 7999999999999999999999999999999999
Q ss_pred cC-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc---CCCceeeecC
Q 015120 275 EG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS---DNHKYGYNAA 350 (413)
Q Consensus 275 ~g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~---~~~~~G~d~~ 350 (413)
++ ++|||||+||.+|+.|.+.+....+.+|+ .+.+++.||+.+|++|++|+|.+++..+..+++. +...+|+|..
T Consensus 400 ~PklvPGGGAtEMAvs~~L~qksa~~~GVekw-PY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~ 478 (527)
T KOG0364|consen 400 NPKLVPGGGATEMAVSHELRQKSALMTGVEKW-PYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGE 478 (527)
T ss_pred CCcccCCccHHHHHHHHHHHHHHhhccchhcc-chhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCc
Confidence 99 99999999999999999988888899996 8999999999999999999999999999888763 5577899999
Q ss_pred CCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCCC
Q 015120 351 TGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEP 396 (413)
Q Consensus 351 ~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~ 396 (413)
+|.++||.+.|+|+|..+|.+..++|+|++++|||+|.|++..++.
T Consensus 479 tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk~ 524 (527)
T KOG0364|consen 479 TGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKKR 524 (527)
T ss_pred eeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeeec
Confidence 9999999999999999999999999999999999999999887653
No 40
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-46 Score=366.66 Aligned_cols=325 Identities=22% Similarity=0.273 Sum_probs=288.0
Q ss_pred CchhHHHHHHHHHHHhccC--------CceeeecCCccccceeeeeceEEecccccCccccCcccCeeeecCeeEEEecc
Q 015120 20 NNYEVGNMIAEAMSKVGRK--------GVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDK 91 (413)
Q Consensus 20 ~~~~la~lv~~Ai~~vg~~--------~~I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~d~ 91 (413)
+.++++++|++|..++.+. ++++ ..|++++||+ ++.|++|++.... ..++-..++|.++.|
T Consensus 171 ~ed~l~~lVa~ac~si~p~~~FnvdnIrVcK-i~Gg~l~~S~-Vv~GmVfkr~~eG---------~v~~ak~arvAvf~c 239 (537)
T KOG0362|consen 171 NEDFLTKLVAKACVSILPLMSFNVDNIRVCK-ILGGGLEDSC-VVCGMVFKRDPEG---------EVKSAKDARVAVFAC 239 (537)
T ss_pred hHHHHHHHHHHHHHhhcccccccccceEEEE-EecCCcccce-eeEEEEeccccCC---------cccccccceeEEEec
Confidence 6789999999999998864 2343 7999999995 9999999988765 335677888999988
Q ss_pred c-------------CCCHHHHHHH-----------HHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCC
Q 015120 92 K-------------ITNARDLINV-----------LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGF 147 (413)
Q Consensus 92 ~-------------i~~~~~~~~~-----------le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~ 147 (413)
+ |+|++++++| ++.+...|++++++.+.+++.+|++ +|+ ++|+++|.+
T Consensus 240 P~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhf--lnk----y~ImVlqi~-- 311 (537)
T KOG0362|consen 240 PFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHF--LNK----YKIMVLQIN-- 311 (537)
T ss_pred CCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhh--hcc----ccEEEEEec--
Confidence 7 7888888876 5667789999999999999999998 677 899999987
Q ss_pred CccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEE---EcCCeEEEEcCCCChhhHHHHHHHHHHHHHhhch
Q 015120 148 GERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQ 224 (413)
Q Consensus 148 g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~ 224 (413)
++.+|.||++..||++++ ++..+.+..+|+|.+|. ++++.++.|.....
T Consensus 312 ---Sk~eLrrlcrtvGA~~l~-----rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~-------------------- 363 (537)
T KOG0362|consen 312 ---SKFDLRRLCRTVGATALP-----RLFPPAPEELGYCDSVSTQEIGDTLVVVFRWEST-------------------- 363 (537)
T ss_pred ---cHhhHHHHHHHcCCccch-----hccCCCCccccccceeeeeecCCceEEEEeeccC--------------------
Confidence 899999999999999999 88899999999999997 46777777763221
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC-ccccCchHHHHHHHHHHHHhccCCChH
Q 015120 225 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDE 303 (413)
Q Consensus 225 ~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~e 303 (413)
.++++||+|||+|+..+|+.||.+.|++++.+...+++ ++||+|++|++|+++|.+++.+++|.+
T Consensus 364 --------------~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~ 429 (537)
T KOG0362|consen 364 --------------GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLK 429 (537)
T ss_pred --------------CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcc
Confidence 13699999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhcc--CCCceeeecCCC-cccccccCCccccchhHHHHHHHHHHHH
Q 015120 304 EKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS--DNHKYGYNAATG-NYEDLMAAGIIDPTKVVRCCLEHASSVA 380 (413)
Q Consensus 304 q~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~--~~~~~G~d~~~g-~i~dm~~~gI~Dp~~vk~~~l~~A~e~a 380 (413)
| ++++.|++||+..|++|++|||++..++++++.+. +..+.|+|+... ...|+.+.||||-+.+|.++|+.|+++|
T Consensus 430 q-~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa 508 (537)
T KOG0362|consen 430 Q-LAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAA 508 (537)
T ss_pred h-hHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhh
Confidence 9 59999999999999999999999999999999763 356688988776 5999999999999999999999999999
Q ss_pred HHHhchhHHhhccCCCCCCCCCCCCC
Q 015120 381 KTFLMSDCVVVEIKEPEPAMPAGNPM 406 (413)
Q Consensus 381 ~~iL~id~iI~~~~~~~~~~~~~~~~ 406 (413)
.++|++|+||+++|...|+||++.++
T Consensus 509 ~tvl~vDqiimak~aggp~~~~~~~~ 534 (537)
T KOG0362|consen 509 LTVLTVDQIIMAKKAGGPKPPGKKPD 534 (537)
T ss_pred heeeehhheeEecccCCCCCCCCCCC
Confidence 99999999999999988887765543
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-46 Score=365.58 Aligned_cols=332 Identities=21% Similarity=0.294 Sum_probs=284.6
Q ss_pred cccCChhHHHHHHHhcCCc------hhHHHHHHHHHHHhcc-CCc-----eee--ecCCccccceeeeeceEEecccccC
Q 015120 3 KEVEDSELADVAAVSAGNN------YEVGNMIAEAMSKVGR-KGV-----VTL--EEGKSAENMLYVVEGMQFDRGYISP 68 (413)
Q Consensus 3 ~pv~~~~L~~VA~ts~~~~------~~la~lv~~Ai~~vg~-~~~-----I~~--~~g~s~~ds~~~i~G~~~~~~~~~~ 68 (413)
+|++-.-|..||++|.+.. +.++.++++|+..+.. ++. +++ -...+..|. .+++|+++++|..||
T Consensus 138 ~~~~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT-~~v~glvLdhg~rHp 216 (520)
T KOG0359|consen 138 REVDRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDT-SLVQGLVLDHGARHP 216 (520)
T ss_pred cchhHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhh-HHhhhhhccCCCCCc
Confidence 4444227999999997633 5677899999988773 221 111 245677887 599999999999999
Q ss_pred ccccCcccCeeeecCeeEEEeccc-------CC------CHHHHHH-------H----HHHHHhcCC----CEEEEeccC
Q 015120 69 YFVTDSEKMAVEYENCKLLLVDKK-------IT------NARDLIN-------V----LEDAIRGAY----PILIIAEDI 120 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~~~Ili~d~~-------i~------~~~~~~~-------~----le~i~~~~~----~lvI~~~~i 120 (413)
. ||++++|++||+++.+ |+ +.+|-.. | +.+|...++ -+||.+++|
T Consensus 217 d-------mp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGi 289 (520)
T KOG0359|consen 217 D-------MPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGI 289 (520)
T ss_pred c-------cccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCC
Confidence 7 8999999999999985 22 3343222 1 345554443 469999999
Q ss_pred chHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEE---EcCCeEE
Q 015120 121 EQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVV---LTKDTTT 197 (413)
Q Consensus 121 ~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~---i~~~~~~ 197 (413)
||..|..|. + .+|.|+| +.+|..||||..+|||..++ +++|+++++||+|+.|+ +++++|+
T Consensus 290 dp~sld~~a--~----~gIlaLR-----RAKRRNmERL~lacGG~a~n-----svddLtp~~LG~aglVye~tlGEEkfT 353 (520)
T KOG0359|consen 290 DPTSLDSLA--K----SGILALR-----RAKRRNMERLVLACGGEAVN-----SVDDLTPDYLGYAGLVYEYTLGEEKFT 353 (520)
T ss_pred CCCcchhhh--h----cchHHHH-----HHhhhhHHHHHHhhccceec-----ccccCChhhccccceeEEeeccceeeE
Confidence 999998863 4 4678887 77999999999999999999 99999999999999998 5899999
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC-
Q 015120 198 IVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG- 276 (413)
Q Consensus 198 ~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g- 276 (413)
|+++|++| +.|||+++|||++.+.+.+++++|+|++++++++++
T Consensus 354 FIE~~~~p-----------------------------------~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~ 398 (520)
T KOG0359|consen 354 FIEKCNNP-----------------------------------SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKC 398 (520)
T ss_pred eeecCCCC-----------------------------------cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcc
Confidence 99999998 689999999999999999999999999999999999
Q ss_pred ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCCCchhhHHhhhccC-CCceeeecCCCccc
Q 015120 277 IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD-NHKYGYNAATGNYE 355 (413)
Q Consensus 277 vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~d~~~i~~kl~~~~-~~~~G~d~~~g~i~ 355 (413)
++||+|++|.+++.+|+....+++++.+ +|+++|++||..+|++|++|+|+|..+.+.+|.... ...+|+|+.+|+..
T Consensus 399 ~i~Gaga~~va~~~~lr~~k~~vkgra~-~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~ 477 (520)
T KOG0359|consen 399 GIPGAGAFEVALGRHLRESKKSVKGRAY-LGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEEC 477 (520)
T ss_pred cccCchHHHHHHHHHHHHhhhccCchhh-hhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCcc
Confidence 9999999999999999988888999998 799999999999999999999999999999987642 23569999999999
Q ss_pred ccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccC
Q 015120 356 DLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIK 394 (413)
Q Consensus 356 dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~ 394 (413)
|....||||.+.||++.|.+++-+|+.||-+|+|+.+..
T Consensus 478 ~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rAG~ 516 (520)
T KOG0359|consen 478 DPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRAGM 516 (520)
T ss_pred chhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999998754
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-46 Score=351.80 Aligned_cols=248 Identities=19% Similarity=0.214 Sum_probs=228.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCcc
Q 015120 95 NARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLA 174 (413)
Q Consensus 95 ~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~ 174 (413)
++-++..+++.++++|.+++||+|+|||+|.++|..|. .-||||.|.. ++|-||++|||++++ +
T Consensus 140 ~~~ef~emi~~vK~~ga~l~icqwgfddeanhll~~n~------lpavrwVGGp-----EiEliAiaT~grIVp-----r 203 (400)
T KOG0357|consen 140 DPFEFEEMIQQIKETGANLAICQWGFDDEANHLLLQNN------LPAVRWVGGP-----EIELIAIATGGRIVP-----R 203 (400)
T ss_pred ccccHHHHHHHHHhhCCcEEEEecccCchhhhHHhhcC------CCceeecCCc-----ceEEEEeecCCeeec-----c
Confidence 33347778999999999999999999999999988765 5788988644 567899999999999 9
Q ss_pred ccCCCCcccccceEEEE-----cCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecC
Q 015120 175 LDKVGKEVLGNASKVVL-----TKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGA 249 (413)
Q Consensus 175 l~~~~~~~lG~~~~v~i-----~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G 249 (413)
+++++++.||+|+.|.. ++|++.+++.|+++ +.+||.+||
T Consensus 204 F~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~ns-----------------------------------kaVTifvRg 248 (400)
T KOG0357|consen 204 FSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNS-----------------------------------KAVTIFVRG 248 (400)
T ss_pred HhhhCHhhccccceEEEEecccccceEEEEEecCCC-----------------------------------ceEEEEEec
Confidence 99999999999999973 48999999999986 689999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhhhcC-ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHHHHHHhcCC
Q 015120 250 QTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGV 328 (413)
Q Consensus 250 ~t~~~l~E~~~~~~DAl~a~k~al~~g-vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~~L~~NaG~ 328 (413)
.|..+++|.||++|||||++|+.+++. +|+|||++|+.||-++.+.+.++++.||+ ++++|++||++||..||+|+|+
T Consensus 249 ~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqy-a~rafa~ale~ipmalaensgl 327 (400)
T KOG0357|consen 249 GNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQY-AFRAFADALESIPMALAENSGL 327 (400)
T ss_pred CcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHH-HHHHHHHHHhhcchhhhhccCC
Confidence 999999999999999999999999999 99999999999999999999999999995 9999999999999999999999
Q ss_pred CchhhHHhhhc----cCCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccC
Q 015120 329 NGSVVSEKVLS----SDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIK 394 (413)
Q Consensus 329 d~~~i~~kl~~----~~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~ 394 (413)
+|++.++++++ .+++++|+|+.-..--||.+.+++||+.-|++.+..|++++.|||+||+++....
T Consensus 328 ~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~ 397 (400)
T KOG0357|consen 328 DPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPGE 397 (400)
T ss_pred CchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCCC
Confidence 99999999886 2678999999988889999999999999999999999999999999999986543
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.97 E-value=4.5e-30 Score=239.44 Aligned_cols=191 Identities=36% Similarity=0.467 Sum_probs=169.8
Q ss_pred hHHHHHHHhcC-----CchhHHHHHHHHHHHhcc------CCce--eeecCCccccceeeeeceEEecccccCccccCcc
Q 015120 9 ELADVAAVSAG-----NNYEVGNMIAEAMSKVGR------KGVV--TLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSE 75 (413)
Q Consensus 9 ~L~~VA~ts~~-----~~~~la~lv~~Ai~~vg~------~~~I--~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~ 75 (413)
+|.+||+||.+ +++.|++++++|+..++. .+.| ++.+|+++.|+ ++++|++|++++.+|+
T Consensus 3 ~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~------ 75 (209)
T cd03333 3 LLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPY------ 75 (209)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhc-eeEeeEEEeccccCCC------
Confidence 68999999988 899999999999999987 2444 44689999999 6999999999999987
Q ss_pred cCeeeecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhH
Q 015120 76 KMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYL 155 (413)
Q Consensus 76 ~~~~~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~l 155 (413)
|++.++||+|+++++++.. +||++++|++.++++|.. .+|++|++ .++++|
T Consensus 76 -m~~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~------~~I~~v~~-----~~~~~l 126 (209)
T cd03333 76 -MPKRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAK------AGIMAVRR-----VKKEDL 126 (209)
T ss_pred -CCeEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHH------CCCEEEEe-----CCHHHH
Confidence 6889999999999999776 899999999999999653 56899984 589999
Q ss_pred HHHHHHhCCeEeecCcCccccCCCCcccccceEEEEc---CCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHH
Q 015120 156 DDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT---KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLN 232 (413)
Q Consensus 156 e~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~ 232 (413)
+|||.+|||++++ ++++++++.||+|+.|++. ++++++|.+|.++
T Consensus 127 ~~ia~~tga~ii~-----~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~--------------------------- 174 (209)
T cd03333 127 ERIARATGATIVS-----SLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG--------------------------- 174 (209)
T ss_pred HHHHHHHCCEEec-----ccccCChhhceeeeEEEEEEECCeEEEEEEcCCCC---------------------------
Confidence 9999999999999 7889999999999999964 4578899887653
Q ss_pred HHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhc
Q 015120 233 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 275 (413)
Q Consensus 233 ~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~ 275 (413)
+.|||+|||+|+.+++|.||+++||++++++++++
T Consensus 175 --------~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 --------KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred --------CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 69999999999999999999999999999999874
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.96 E-value=7.3e-29 Score=238.67 Aligned_cols=198 Identities=19% Similarity=0.171 Sum_probs=168.7
Q ss_pred CchhHHHHHHHHHHHhccC----------Cc--eeeecCCccccceeeeeceEEecccccCccccCcccCeeeecCeeEE
Q 015120 20 NNYEVGNMIAEAMSKVGRK----------GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLL 87 (413)
Q Consensus 20 ~~~~la~lv~~Ai~~vg~~----------~~--I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 87 (413)
+.+.|++++++|+..+..+ .. |.+.+|+++.|| ++++|+++++.+.++. ||++++||+|+
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS-~li~Gvvi~k~~~~~~-------m~~~i~n~kIl 90 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDS-EVVDGVVFTKNVAHKR-------MPSKIKNPRIL 90 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHc-EEEeeEEEeCCCCCcc-------CCcccCCCcEE
Confidence 5689999999999988521 12 444689999999 6999999999988864 89999999999
Q ss_pred EecccCC------CHHHHH-----------HHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCcc
Q 015120 88 LVDKKIT------NARDLI-----------NVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGER 150 (413)
Q Consensus 88 i~d~~i~------~~~~~~-----------~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~ 150 (413)
++++++. +++++. ..++++++.|+++||++++|++.++++|. + .+|++++ ++
T Consensus 91 ll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~--k----~gI~~v~-----~v 159 (261)
T cd03334 91 LLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLL--E----AGITLVL-----NV 159 (261)
T ss_pred EEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHH--H----CCCEEEE-----ec
Confidence 9999863 333333 34788999999999999999999999954 4 5688888 55
Q ss_pred chhhHHHHHHHhCCeEeecCcCcc-ccCCCCcccccceEEEE---cC-----CeEEEEcCCCChhhHHHHHHHHHHHHHh
Q 015120 151 KSQYLDDIAILTGGTVIRDEVGLA-LDKVGKEVLGNASKVVL---TK-----DTTTIVGDGSTQDAVSKRVAQIRTLIEN 221 (413)
Q Consensus 151 ~~~~le~la~~tG~~~~~~~~~~~-l~~~~~~~lG~~~~v~i---~~-----~~~~~~~~~~~~~~i~~ri~~l~~~l~~ 221 (413)
++++|+|||++|||++++ + .++++++.||+|+.|++ ++ ++++||++|+.+
T Consensus 160 ~~~dl~rIa~~tGa~ii~-----~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~---------------- 218 (261)
T cd03334 160 KPSVLERISRCTGADIIS-----SMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE---------------- 218 (261)
T ss_pred CHHHHHHHHHHhCCEEec-----ChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC----------------
Confidence 899999999999999999 7 35788999999999985 33 589999998765
Q ss_pred hchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC
Q 015120 222 AEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 276 (413)
Q Consensus 222 ~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g 276 (413)
+.+||+|||+|+++++|.||.++||+++++++..++
T Consensus 219 -------------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 -------------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred -------------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 589999999999999999999999999999998876
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.29 E-value=3e-11 Score=134.03 Aligned_cols=206 Identities=18% Similarity=0.245 Sum_probs=164.3
Q ss_pred hhHHHHHHHHHHHhccC----------Cc--eeeecCCccccceeeeeceEEecccccCccccCcccCeeeecCeeEEEe
Q 015120 22 YEVGNMIAEAMSKVGRK----------GV--VTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLV 89 (413)
Q Consensus 22 ~~la~lv~~Ai~~vg~~----------~~--I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~ 89 (413)
+-+..++.+|...+..+ +. |+.+.+|+..|+ +++.|+++.+...+- +|..++++|+|+++
T Consensus 335 ~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS-~vi~Gvv~sKn~~~k-------~M~~~~e~prilll 406 (1598)
T KOG0230|consen 335 DIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDS-EVIKGVVCSKNVAHK-------RMATKYENPRILLL 406 (1598)
T ss_pred HHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccc-eeeeEEEeecchhhh-------hhhhhccCCceEEE
Confidence 45677888888887764 23 455789999999 799999999988774 48889999999999
Q ss_pred ccc---------CCCHHHHH--------HHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccch
Q 015120 90 DKK---------ITNARDLI--------NVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKS 152 (413)
Q Consensus 90 d~~---------i~~~~~~~--------~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~ 152 (413)
.+. +.+++.++ ..+.+|.....+++.+.++|+..|..+|. . +||.-+. ++++
T Consensus 407 ~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~--~-k~I~lvl--------nvK~ 475 (1598)
T KOG0230|consen 407 GGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLL--D-KGISLVL--------NVKR 475 (1598)
T ss_pred ecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhh--c-cCeEEEE--------eccH
Confidence 985 23333322 24666777888999999999999999964 3 3333222 6688
Q ss_pred hhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEEEc--------CCeEEEEcCCCChhhHHHHHHHHHHHHHhhch
Q 015120 153 QYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLT--------KDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQ 224 (413)
Q Consensus 153 ~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~--------~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~ 224 (413)
..|+||+++|||.+++ +++.++...||+|..+++. ...++||+||+.+
T Consensus 476 s~leRIsR~tga~I~~-----siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~------------------- 531 (1598)
T KOG0230|consen 476 SLLERISRCTGADIVP-----SVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKP------------------- 531 (1598)
T ss_pred HHHHHHHHHhcCceec-----chhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCC-------------------
Confidence 9999999999999999 8888999999999999853 3467899999986
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHH-HhhhcCccccCchHHH
Q 015120 225 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATK-AAVEEGIVVGGGCTLL 286 (413)
Q Consensus 225 ~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k-~al~~gvVpGGGa~e~ 286 (413)
.-|||++||.+..++.+.++-+.-++-++- .+++.-++.--|+...
T Consensus 532 ----------------lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 532 ----------------LGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred ----------------CCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc
Confidence 478999999999999999999999998884 4566668877777554
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=1.7e-05 Score=83.62 Aligned_cols=87 Identities=22% Similarity=0.302 Sum_probs=72.1
Q ss_pred HHHHHHhcCCC-EEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhH-HHHHHHhCCeEeecCcCccccCCC
Q 015120 102 VLEDAIRGAYP-ILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYL-DDIAILTGGTVIRDEVGLALDKVG 179 (413)
Q Consensus 102 ~le~i~~~~~~-lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~l-e~la~~tG~~~~~~~~~~~l~~~~ 179 (413)
+++.+.+.+.+ ++|++++|+|.++++| .+ .+|.+++ ++.++++ ++|+.+|||+.++ .+++++
T Consensus 262 ~v~ni~~~g~~~vvv~~~gi~D~~~~~L--~d----~~Ilt~~-----~v~~~dl~~~l~~~~ga~~v~-----~~~d~t 325 (524)
T COG0459 262 LVVNILRGGANVVVVKAPGIDDLAKAYL--ED----IAILTGR-----RVKKEDLGERLAKLGGAKIVS-----VLKDLT 325 (524)
T ss_pred HHHHHHhcCCCEEEEECCCCcHHHHHHH--Hh----hcceecc-----eecchhhHHHHHHccCceEEe-----ecccCc
Confidence 35567778999 9999999999999995 44 5677776 5578889 8999999999999 899999
Q ss_pred Cccccc--ceEEEE---cCCeEEEEcCCCC
Q 015120 180 KEVLGN--ASKVVL---TKDTTTIVGDGST 204 (413)
Q Consensus 180 ~~~lG~--~~~v~i---~~~~~~~~~~~~~ 204 (413)
+..+|. |+.|+. +++++++++++.+
T Consensus 326 ~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~ 355 (524)
T COG0459 326 TIVLGEGAAGLVEETKTGDYDMEKLQERKA 355 (524)
T ss_pred eeecCccccceEEEeeccchhhhhhhhhhh
Confidence 999999 999984 4667777777653
No 47
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=60.40 E-value=2.7 Score=44.76 Aligned_cols=61 Identities=26% Similarity=0.426 Sum_probs=50.9
Q ss_pred CCCEEEEeccCch-----HHHHHHHHHhhcccc----eeeEeeCCCCCccchhhHHHHHHHhCCeEeecCc
Q 015120 110 AYPILIIAEDIEQ-----EALATLVVNKLRGAL----KIAALKAPGFGERKSQYLDDIAILTGGTVIRDEV 171 (413)
Q Consensus 110 ~~~lvI~~~~i~~-----~al~~L~~n~~~~~~----~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~ 171 (413)
..++.|..+++++ +++..++.++++++. ++++++.| +++.....|++.+++++.++...++
T Consensus 247 ~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~dl 316 (522)
T TIGR02345 247 KDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDEDL 316 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHHHH
Confidence 3477888888888 888888888887754 88999998 9999999999999999998877543
No 48
>smart00574 POX domain associated with HOX domains.
Probab=48.27 E-value=1.3e+02 Score=26.21 Aligned_cols=59 Identities=22% Similarity=0.213 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC-ccccCchHHHHHHHHHHHHh
Q 015120 225 DYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIK 296 (413)
Q Consensus 225 ~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vVpGGGa~e~~ls~~L~~~~ 296 (413)
..||.-++++.++|- .+++|++++++--..-++.++..= .|+|+|++-.+.+-+|+..+
T Consensus 69 ~~~r~e~q~kk~kLl-------------~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~S 128 (140)
T smart00574 69 TAERQELQRKKAKLL-------------SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTIS 128 (140)
T ss_pred hhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 455666666666663 358899999888888888877764 88999999888887776654
No 49
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=44.98 E-value=19 Score=37.62 Aligned_cols=38 Identities=32% Similarity=0.380 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhhcC-ccccCchHHHHHHHHHHHHhcc
Q 015120 260 LRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIKET 298 (413)
Q Consensus 260 ~~~~DAl~a~k~al~~g-vVpGGGa~e~~ls~~L~~~~~~ 298 (413)
+.+.+|+.++|++ +.+ +|.|||+-+-.+..+|..++++
T Consensus 217 ~eL~~A~~lik~a-k~PlIvaGGGv~YS~A~~~L~af~E~ 255 (617)
T COG3962 217 RELADAAALIKSA-KKPLIVAGGGVLYSGAREALRAFAET 255 (617)
T ss_pred HHHHHHHHHHHhc-CCCEEEecCceeechHHHHHHHHHHh
Confidence 4578899999988 556 9999999888888888888754
No 50
>PRK12338 hypothetical protein; Provisional
Probab=42.39 E-value=3.6e+02 Score=26.90 Aligned_cols=130 Identities=19% Similarity=0.246 Sum_probs=71.9
Q ss_pred HHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHH-HH---HHhCCeEeecCcCccccCC
Q 015120 103 LEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDD-IA---ILTGGTVIRDEVGLALDKV 178 (413)
Q Consensus 103 le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~-la---~~tG~~~~~~~~~~~l~~~ 178 (413)
++.....++++ |...++++-+-.. .+.+.....+.+++ + ..+++++ +. +-.||++.. +
T Consensus 175 ~~~A~e~~Vpv-I~N~did~Tv~~i--le~I~e~s~~i~~~-----H-~~~~~~~El~~I~vd~Gg~v~d---------V 236 (319)
T PRK12338 175 VEQAREHNVPV-IKNDDIDCTVKKM--LSYIREVCVTVTLQ-----H-SVDDLDEVIEIIIKRHGGRITD---------I 236 (319)
T ss_pred HHhHhhCCCce-eCCCcHHHHHHHH--HHHHHhheEEEEEe-----C-CHHHHHHHHHeEEecCCCEEEE---------e
Confidence 45555566664 5667777554444 23333335666666 2 2333333 22 225776665 2
Q ss_pred CCcccccceEEEEcCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHH
Q 015120 179 GKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEK 258 (413)
Q Consensus 179 ~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~ 258 (413)
....+|.-..+.. .. +-.+...++.-++.++.- .++...-..|..|++++=+=.|.++++..+++.
T Consensus 237 ~h~iyG~~~~i~~----~l---~i~s~~dv~~Fi~~~~~~-------~~~~~~~~~L~~lT~gvH~Hti~a~~~e~l~~i 302 (319)
T PRK12338 237 SYPIPGFKDPLKR----EV---NVSDPDEAEKFIKRLNEN-------PKKKEDLKRLYSLSNNVHSHRICAPDEESLNRI 302 (319)
T ss_pred cccCCCCCceeEE----EE---ccCCHHHHHHHHHHHhhC-------CccccchhhHHHHhCCeeEEEEEeCCHHHHHHH
Confidence 2455674333321 01 123455555555544321 122222357889999999999999999999888
Q ss_pred HHHHHH
Q 015120 259 KLRVED 264 (413)
Q Consensus 259 ~~~~~D 264 (413)
++.++.
T Consensus 303 ~~~L~~ 308 (319)
T PRK12338 303 IEELEE 308 (319)
T ss_pred HHHHHH
Confidence 776653
No 51
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=41.94 E-value=2.5e+02 Score=27.33 Aligned_cols=61 Identities=23% Similarity=0.262 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecC-------CChhhHHHHHHHHHHHHHHHHHhhhcCcccc
Q 015120 211 RVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGA-------QTETELKEKKLRVEDALNATKAAVEEGIVVG 280 (413)
Q Consensus 211 ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G-------~t~~~l~E~~~~~~DAl~a~k~al~~gvVpG 280 (413)
....+++++.+...+.||.-| ..+..+|-| .|-.++..+-+.++-|+-+.|++++.|+||-
T Consensus 195 ~~~~~se~v~~~ltkseRPdL---------~sAkvVVsGGR~LKs~enFkll~~LAdklgaavGAtRaaVDaGyvpN 262 (336)
T KOG3954|consen 195 KPVSLSEWVSQELTKSERPDL---------TSAKVVVSGGRGLKSGENFKLLYDLADKLGAAVGATRAAVDAGYVPN 262 (336)
T ss_pred ChhHHHHHHHhhcccccCCcc---------ccceEEEECCcccCCcccceehHHHHHHhchhhchhhhhhccCcCCC
Confidence 345567777776666777666 445555544 3556888899999999999999999999885
No 52
>KOG1593 consensus Asparaginase [Amino acid transport and metabolism]
Probab=40.22 E-value=40 Score=32.58 Aligned_cols=66 Identities=26% Similarity=0.372 Sum_probs=46.3
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC---ccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHH
Q 015120 243 AVIQVGAQTETELKEKKLRVEDALNATKAAVEEG---IVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPL 319 (413)
Q Consensus 243 ~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g---vVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip 319 (413)
.|+-||+. ---|+++||+++++..++-- ++.|-|++.++-+.-+.+ +.+++.|.+ ...-
T Consensus 95 ~tM~VGAV------a~lrrIkdai~vA~~Vleht~HTlLvGe~At~FA~smGf~~--e~Lst~es~----------~~~s 156 (349)
T KOG1593|consen 95 DTMEVGAV------ADLRRIKDAIRVARHVLEHTQHTLLVGESATAFANSMGFKE--EDLSTEESK----------SWWS 156 (349)
T ss_pred Cceeehhh------hhHHHHHHHHHHHHHHHhhhheeeeecccHHHHHHhcCCCc--cccCCHHHH----------HHHH
Confidence 35556553 23578999999999999864 999999999888776654 334554432 3345
Q ss_pred HHHHHhc
Q 015120 320 KLIAKNA 326 (413)
Q Consensus 320 ~~L~~Na 326 (413)
.+.++|+
T Consensus 157 ~W~~~nC 163 (349)
T KOG1593|consen 157 DWKAENC 163 (349)
T ss_pred HHHHhcC
Confidence 6777887
No 53
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=38.71 E-value=1.7e+02 Score=23.22 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=33.2
Q ss_pred HHHHHhcCCCEEEEeccCchHHHHHHHH--HhhcccceeeEeeCCCCCccchhhHHHHHHHhCCe
Q 015120 103 LEDAIRGAYPILIIAEDIEQEALATLVV--NKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 165 (413)
Q Consensus 103 le~i~~~~~~lvI~~~~i~~~al~~L~~--n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~ 165 (413)
++.+.+-...+|++++|+++.....|.. ++ .+|-.+-.| .+++|.++||-.
T Consensus 22 ~Kai~kg~~~~v~iA~Da~~~vv~~l~~lcee----k~Ip~v~V~--------s~~~LGkAcgi~ 74 (84)
T PRK13600 22 LKALKKDQVTSLIIAEDVEVYLMTRVLSQINQ----KNIPVSFFK--------SKHALGKHVGIN 74 (84)
T ss_pred HHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH----cCCCEEEEC--------CHHHHHHHhCCC
Confidence 4555566678999999999987775432 22 233333323 367889999864
No 54
>PF07818 HCNGP: HCNGP-like protein; InterPro: IPR012479 This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP (Q02614 from SWISSPROT). This protein is localised to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Probab=35.29 E-value=56 Score=26.60 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCCchhhHHhhhccCCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHH
Q 015120 318 PLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKT 382 (413)
Q Consensus 318 ip~~L~~NaG~d~~~i~~kl~~~~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~ 382 (413)
+...|..|.++.--.++.||.. ++||| +++.++...||||.....++...+..-+..
T Consensus 30 fN~~L~~s~~frNP~i~ekLi~----~~~Id----e~gTn~p~~i~dP~~~~~~~y~e~L~k~Qk 86 (96)
T PF07818_consen 30 FNDRLQNSKSFRNPSILEKLIE----FFGID----EYGTNFPKDIFDPHGFPEEDYYEELAKAQK 86 (96)
T ss_pred HHHHHHHccccCChHHHHHHHH----HcCCC----cccCCCChhhcCCCCCCHHHHHHHHHHHHH
Confidence 4556777888877778888864 46777 577888899999999999999887765553
No 55
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=35.10 E-value=1.5e+02 Score=23.35 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=33.9
Q ss_pred HHHHHhcCCCEEEEeccCchHHHHHHHH-HhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeE
Q 015120 103 LEDAIRGAYPILIIAEDIEQEALATLVV-NKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 166 (413)
Q Consensus 103 le~i~~~~~~lvI~~~~i~~~al~~L~~-n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~ 166 (413)
++.+.+....+||++.|.++.....+.. -+. .+|-.+. ....++|..++|-.+
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~~~c~~---~~Vpv~~--------~~t~~eLG~A~G~~v 70 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIKELCEE---KSIKIVY--------IDTMKELGVMCGIDV 70 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHh---CCCCEEE--------eCCHHHHHHHHCCcc
Confidence 4556666679999999999987776531 121 2222222 234678999998653
No 56
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=33.95 E-value=1.2e+02 Score=23.67 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=32.4
Q ss_pred HHHHHhcCCCEEEEeccCchHHHHHHH--HHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeE
Q 015120 103 LEDAIRGAYPILIIAEDIEQEALATLV--VNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 166 (413)
Q Consensus 103 le~i~~~~~~lvI~~~~i~~~al~~L~--~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~ 166 (413)
++.+.+....+||++.|.++.....+. .+. .+|-.+..+ ..++|+.++|-.+
T Consensus 20 ~kai~~gkaklViiA~D~~~~~~~~i~~~c~~----~~Vp~~~~~--------s~~eLG~a~G~~~ 73 (82)
T PRK13602 20 VKALKRGSVKEVVVAEDADPRLTEKVEALANE----KGVPVSKVD--------SMKKLGKACGIEV 73 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHHHHH----cCCCEEEEC--------CHHHHHHHHCCCc
Confidence 455556666899999999998665542 122 233323321 3578999998543
No 57
>PRK06683 hypothetical protein; Provisional
Probab=33.91 E-value=1.2e+02 Score=23.84 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=33.9
Q ss_pred HHHHHhcCCCEEEEeccCchHHHHHHH-HHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCeE
Q 015120 103 LEDAIRGAYPILIIAEDIEQEALATLV-VNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV 166 (413)
Q Consensus 103 le~i~~~~~~lvI~~~~i~~~al~~L~-~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~ 166 (413)
++.+.+..+.+||++.|.++.....+. .-+. .+|-.+. -...++|..++|-.+
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~~~~~~---~~Vpv~~--------~~t~~eLG~A~G~~~ 73 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVIIRTALQ---HNIPITK--------VESVRKLGKVAGIQV 73 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHHHHh---cCCCEEE--------ECCHHHHHHHhCCcc
Confidence 455556667899999999998877643 1121 2333232 224688999999644
No 58
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=32.13 E-value=1.3e+02 Score=26.21 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcC-ccccCchHHHHHHHHHHHHh
Q 015120 253 TELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLSSKVDAIK 296 (413)
Q Consensus 253 ~~l~E~~~~~~DAl~a~k~al~~g-vVpGGGa~e~~ls~~L~~~~ 296 (413)
.+++|++++++--..=.+..+..= .|+|.|++-.+.+-+|+..+
T Consensus 84 ~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamS 128 (140)
T PF07526_consen 84 SMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMS 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 357888888887777777776664 78999999988888887654
No 59
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=30.33 E-value=84 Score=30.60 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=31.7
Q ss_pred HHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC-ccccCchHH
Q 015120 235 IAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTL 285 (413)
Q Consensus 235 l~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vVpGGGa~e 285 (413)
+.+++|++..|.++|..-. -++....+-+-+..++..=..- +|.|||..-
T Consensus 18 i~~~~~~~~VIk~gG~~~~-~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i 68 (284)
T CHL00202 18 IQKFRGRIMVIKYGGAAMK-NLILKADIIKDILFLSCIGLKIVVVHGGGPEI 68 (284)
T ss_pred HHHHcCCeEEEEEChHHhc-CcchHHHHHHHHHHHHHCCCcEEEEeCCcHHH
Confidence 5678899999999996521 1223445556666655521234 889999843
No 60
>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=28.59 E-value=2.2e+02 Score=24.48 Aligned_cols=54 Identities=13% Similarity=0.262 Sum_probs=36.1
Q ss_pred eEEEEcCCeEEEEcC------CCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcC
Q 015120 187 SKVVLTKDTTTIVGD------GSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSG 240 (413)
Q Consensus 187 ~~v~i~~~~~~~~~~------~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g 240 (413)
|.+++.+++.+++-. .-+.+...+..+..+..+....+++.++.++.|+.+++.
T Consensus 67 Gf~eV~~n~v~Ila~~ae~~eeID~~~a~~a~~~Ae~~~~~~~~~~~~~~~~~~~~~~~~ 126 (133)
T PRK14736 67 GFAEIGPTSVTVLAERAAPVEELTPEMIDREIEAVEMERDATQDLDKREALNAQIVQMQE 126 (133)
T ss_pred eEEEEECCEEEEEeeeeEEhhhCCHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Confidence 444455665555542 235667777777777777777778888888887777653
No 61
>PLN02512 acetylglutamate kinase
Probab=28.55 E-value=1.3e+02 Score=29.74 Aligned_cols=48 Identities=25% Similarity=0.300 Sum_probs=28.7
Q ss_pred HHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC-ccccCch
Q 015120 235 IAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGC 283 (413)
Q Consensus 235 l~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vVpGGGa 283 (413)
|.++.|++..|.++|..-..- +....+.+.+..++..=..- +|-|||.
T Consensus 42 i~~~~~~tiVIKlGGs~i~d~-~~~~~~~~di~~l~~~g~~iVlVHGgG~ 90 (309)
T PLN02512 42 IQRFRGKTVVVKYGGAAMKDP-ELKAGVIRDLVLLSCVGLRPVLVHGGGP 90 (309)
T ss_pred HHHHCCCeEEEEECCeeccCh-hHHHHHHHHHHHHHHCCCCEEEEECCcH
Confidence 567789999999999774322 23333444444443311123 7899988
No 62
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=27.43 E-value=64 Score=28.88 Aligned_cols=40 Identities=15% Similarity=0.296 Sum_probs=25.3
Q ss_pred ecCeeEEEecccCC-----CHHHHHHHHHHHHhcCCCEEEEeccC
Q 015120 81 YENCKLLLVDKKIT-----NARDLINVLEDAIRGAYPILIIAEDI 120 (413)
Q Consensus 81 ~~~~~Ili~d~~i~-----~~~~~~~~le~i~~~~~~lvI~~~~i 120 (413)
+.+|+++++|.+.. +.+.+..++..+.+.+..++++..+.
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 143 AMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 45788888888743 34455566666655566677766554
No 63
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=24.87 E-value=3.3e+02 Score=26.42 Aligned_cols=43 Identities=23% Similarity=0.272 Sum_probs=32.3
Q ss_pred CCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC-ccccCch
Q 015120 240 GGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGC 283 (413)
Q Consensus 240 g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vVpGGGa 283 (413)
+++..|.++|. -..-++..+++-+.+.-.+..-..+ +|-|||.
T Consensus 2 ~k~~VIK~GG~-~~~~~~l~~~~~~di~lL~~~G~~~VvVHGggp 45 (265)
T COG0548 2 GKTIVIKLGGS-AMEDENLLEAFASDIALLKSVGIRPVVVHGGGP 45 (265)
T ss_pred CceEEEEECce-eecCchHHHHHHHHHHHHHHCCCcEEEEeCCch
Confidence 46788889884 3444556777888888888887778 8888887
No 64
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=24.06 E-value=80 Score=31.89 Aligned_cols=39 Identities=26% Similarity=0.195 Sum_probs=29.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhhhcC--ccccCchHHHHHH
Q 015120 251 TETELKEKKLRVEDALNATKAAVEEG--IVVGGGCTLLRLS 289 (413)
Q Consensus 251 t~~~l~E~~~~~~DAl~a~k~al~~g--vVpGGGa~e~~ls 289 (413)
...+-.|+++.|+.-.+++-||+.+| +|.|.|++-+--+
T Consensus 41 ~~f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~A 81 (363)
T PF04864_consen 41 GWFISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNA 81 (363)
T ss_dssp STTS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHH
Confidence 36778899999999999999999998 9999999865543
No 65
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.70 E-value=1.1e+02 Score=27.44 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=25.8
Q ss_pred ecCeeEEEecccCC-----CHHHHHHHHHHHHhcCCCEEEEeccCch
Q 015120 81 YENCKLLLVDKKIT-----NARDLINVLEDAIRGAYPILIIAEDIEQ 122 (413)
Q Consensus 81 ~~~~~Ili~d~~i~-----~~~~~~~~le~i~~~~~~lvI~~~~i~~ 122 (413)
+.+|+++++|.+.. +.+.+..+++.+.+.+..++++..+.+.
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChH
Confidence 35777888887643 2345555566555556667777666553
No 66
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.39 E-value=1.2e+02 Score=24.95 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeE
Q 015120 207 AVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVA 243 (413)
Q Consensus 207 ~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~ 243 (413)
..+.|++.++.+++...+..+-..|+-+++.++|.+.
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~ 82 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELK 82 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHH
Confidence 3488999999999999999999999999999998743
No 67
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=22.89 E-value=1.2e+02 Score=27.47 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=26.5
Q ss_pred cCeeEEEecccCC-----CHHHHHHHHHHHHhcCCCEEEEeccCchHH
Q 015120 82 ENCKLLLVDKKIT-----NARDLINVLEDAIRGAYPILIIAEDIEQEA 124 (413)
Q Consensus 82 ~~~~Ili~d~~i~-----~~~~~~~~le~i~~~~~~lvI~~~~i~~~a 124 (413)
.+|.++++|.+.+ +.+.+..+++.+.+.+.-++++..+.+.+.
T Consensus 128 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 175 (194)
T cd03213 128 SNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEI 175 (194)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHH
Confidence 5777888887643 344555566665555666777777665433
No 68
>PLN02825 amino-acid N-acetyltransferase
Probab=22.49 E-value=6e+02 Score=27.17 Aligned_cols=47 Identities=11% Similarity=0.062 Sum_probs=27.6
Q ss_pred HHHhcCCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcC-ccccCch
Q 015120 235 IAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGC 283 (413)
Q Consensus 235 l~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vVpGGGa 283 (413)
|.++.|++..|.++|..-. ++.-..+-.-+..+++.=-.. +|.|||-
T Consensus 12 I~~~rgktfVIk~gG~~l~--~~~~~~l~~DialL~~lGi~~VlVHGggp 59 (515)
T PLN02825 12 IQGHRGSTFVVVISGEVVA--GPHLDNILQDISLLHGLGIKFVLVPGTHV 59 (515)
T ss_pred HHHHCCCEEEEEECchhhc--CchHHHHHHHHHHHHHCCCCEEEEcCCCH
Confidence 5677899999999996532 222222333333333331223 8889887
No 69
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=22.46 E-value=1.6e+02 Score=24.68 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=30.5
Q ss_pred EEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHH
Q 015120 87 LLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLV 129 (413)
Q Consensus 87 li~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~ 129 (413)
.++|++ +++.....++.+.+.|+|+|+...+++++-+..|-
T Consensus 70 VvIDfT--~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~ 110 (124)
T PF01113_consen 70 VVIDFT--NPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELE 110 (124)
T ss_dssp EEEEES---HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHH
T ss_pred EEEEcC--ChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHH
Confidence 344554 78888889999999999999999999987777643
No 70
>COG2262 HflX GTPases [General function prediction only]
Probab=21.49 E-value=7.4e+02 Score=25.67 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=39.1
Q ss_pred ChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCeEEEEecCCChhhHHHHHHHH
Q 015120 204 TQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRV 262 (413)
Q Consensus 204 ~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~ 262 (413)
+...+..||..|+++|+.. ++.+-..|-.|-..++.+|-+=|.|..---..-.++
T Consensus 158 drR~ir~rI~~i~~eLe~v----~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~L 212 (411)
T COG2262 158 DRRRIRRRIAKLKRELENV----EKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNAL 212 (411)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHH
Confidence 3667888899999988774 344455566677788999999999976554444333
No 71
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=21.12 E-value=8e+02 Score=24.17 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=14.6
Q ss_pred CCCCccchhhHHHHHHHhCCeEee
Q 015120 145 PGFGERKSQYLDDIAILTGGTVIR 168 (413)
Q Consensus 145 ~~~g~~~~~~le~la~~tG~~~~~ 168 (413)
+.+.+..|+.+.+.+...|.+.+.
T Consensus 107 ~~~~~~~R~~l~~a~~~ag~~~~~ 130 (335)
T PRK13929 107 SGSTAVERRAISDAVKNCGAKNVH 130 (335)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeeE
Confidence 344555666666666666766554
No 72
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=21.11 E-value=3e+02 Score=22.25 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=31.1
Q ss_pred HHHHHhcCCCEEEEeccCchHHHHHHHH-HhhcccceeeEeeCCCCCccchhhHHHHHHHhCC
Q 015120 103 LEDAIRGAYPILIIAEDIEQEALATLVV-NKLRGALKIAALKAPGFGERKSQYLDDIAILTGG 164 (413)
Q Consensus 103 le~i~~~~~~lvI~~~~i~~~al~~L~~-n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~ 164 (413)
++.+.+..+.+||++.|+++.....+.. -+. .+|-.+..+ ...++|+.++|-
T Consensus 25 ~kai~~gkaklViiA~D~~~~~~~~i~~~c~~---~~Ip~~~~~-------~tk~eLG~a~Gk 77 (99)
T PRK01018 25 IKAIKLGKAKLVIVASNCPKDIKEDIEYYAKL---SGIPVYEYE-------GSSVELGTLCGK 77 (99)
T ss_pred HHHHHcCCceEEEEeCCCCHHHHHHHHHHHHH---cCCCEEEEC-------CCHHHHHHHhCC
Confidence 4556666679999999998876665431 111 222222221 134788899984
No 73
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=20.99 E-value=2.2e+02 Score=28.49 Aligned_cols=82 Identities=21% Similarity=0.256 Sum_probs=43.3
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHhcCC--eEEEEecCCC-------------hhhHHHHHHHHHHHHHHHHH--------
Q 015120 215 IRTLIENAEQDYEREKLNERIAKLSGG--VAVIQVGAQT-------------ETELKEKKLRVEDALNATKA-------- 271 (413)
Q Consensus 215 l~~~l~~~~~~~~~~~l~~Rl~~l~g~--~~tI~v~G~t-------------~~~l~E~~~~~~DAl~a~k~-------- 271 (413)
++++-.-.-++..-|++++++...... -.++.|+|.. +.+.+=++..+.+-+..++.
T Consensus 188 ir~~y~l~Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~pPe 267 (326)
T PF06723_consen 188 IREKYNLLIGERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTPPE 267 (326)
T ss_dssp HHHHHSEE--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HH
T ss_pred HHHhhCcccCHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 344333345566778888887655322 2356666642 22222223333333333333
Q ss_pred ----hhhcC-ccccCchHHHHHHHHHHHHh
Q 015120 272 ----AVEEG-IVVGGGCTLLRLSSKVDAIK 296 (413)
Q Consensus 272 ----al~~g-vVpGGGa~e~~ls~~L~~~~ 296 (413)
.+++| ++.|||+-.--+..+|.+.-
T Consensus 268 l~~DI~~~GI~LtGGga~l~Gl~~~i~~~~ 297 (326)
T PF06723_consen 268 LAADILENGIVLTGGGALLRGLDEYISEET 297 (326)
T ss_dssp HHHHHHHH-EEEESGGGGSBTHHHHHHHHH
T ss_pred HHHHHHHCCEEEEChhhhhccHHHHHHHHH
Confidence 35689 99999998888887776643
No 74
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.90 E-value=1.1e+02 Score=27.88 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=24.3
Q ss_pred ecCeeEEEecccCC-----CHHHHHHHHHHHHhcCCCEEEEeccCch
Q 015120 81 YENCKLLLVDKKIT-----NARDLINVLEDAIRGAYPILIIAEDIEQ 122 (413)
Q Consensus 81 ~~~~~Ili~d~~i~-----~~~~~~~~le~i~~~~~~lvI~~~~i~~ 122 (413)
+.+|+++++|.+-+ +.+.+..+++...+.+..++++..+.+.
T Consensus 145 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 191 (204)
T PRK13538 145 LTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP 191 (204)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh
Confidence 45777777777633 2344555555554445566666665443
No 75
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=20.79 E-value=4.1e+02 Score=20.71 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=33.0
Q ss_pred HHHHHhcCCCEEEEeccCchHHHHH-HH-HHhhcccceeeEeeCCCCCccchhhHHHHHHHhCCe
Q 015120 103 LEDAIRGAYPILIIAEDIEQEALAT-LV-VNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT 165 (413)
Q Consensus 103 le~i~~~~~~lvI~~~~i~~~al~~-L~-~n~~~~~~~i~av~~~~~g~~~~~~le~la~~tG~~ 165 (413)
.+.+.+....+||++.++++..... +. +-+. .+|-.+..+ ..++|+.++|-.
T Consensus 24 ~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~---~~Ip~~~~~--------s~~eLG~~~g~~ 77 (95)
T PF01248_consen 24 LKALKKGKAKLVILAEDCSPDSIKKHLPALCEE---KNIPYVFVP--------SKEELGRACGKK 77 (95)
T ss_dssp HHHHHTTCESEEEEETTSSSGHHHHHHHHHHHH---TTEEEEEES--------HHHHHHHHTTSS
T ss_pred HHHHHcCCCcEEEEcCCCChhhhcccchhheec---cceeEEEEC--------CHHHHHHHHCCC
Confidence 4555566679999999999877655 21 2121 334444433 457889999864
No 76
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=20.72 E-value=98 Score=28.62 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=23.6
Q ss_pred ecCeeEEEecccCC-----CHHHHHHHHHHHHhcCCCEEEEeccCc
Q 015120 81 YENCKLLLVDKKIT-----NARDLINVLEDAIRGAYPILIIAEDIE 121 (413)
Q Consensus 81 ~~~~~Ili~d~~i~-----~~~~~~~~le~i~~~~~~lvI~~~~i~ 121 (413)
+.+|+++++|.+.. +.+.+.+++..+.+.+..++++..+.+
T Consensus 129 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~ 174 (223)
T TIGR03771 129 ATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174 (223)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45777777777633 344555555555545556666655544
No 77
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=20.42 E-value=1.5e+02 Score=27.34 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=27.0
Q ss_pred ecCeeEEEecccCC-----CHHHHHHHHHHHHhcCCCEEEEeccCchHH
Q 015120 81 YENCKLLLVDKKIT-----NARDLINVLEDAIRGAYPILIIAEDIEQEA 124 (413)
Q Consensus 81 ~~~~~Ili~d~~i~-----~~~~~~~~le~i~~~~~~lvI~~~~i~~~a 124 (413)
+.+|+++++|.+.. +.+.+..++..+.+.+..+|++..+..+++
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~ 207 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDL 207 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHH
Confidence 35778888887633 344555666655555666777777664433
No 78
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=20.37 E-value=94 Score=27.22 Aligned_cols=42 Identities=17% Similarity=0.399 Sum_probs=28.3
Q ss_pred ecCeeEEEecccCC-----CHHHHHHHHHHHHhcCCCEEEEeccCch
Q 015120 81 YENCKLLLVDKKIT-----NARDLINVLEDAIRGAYPILIIAEDIEQ 122 (413)
Q Consensus 81 ~~~~~Ili~d~~i~-----~~~~~~~~le~i~~~~~~lvI~~~~i~~ 122 (413)
+.+|+++++|.+.. +.+.+..++..+.+.+..+|++..+.+.
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 56899999998744 3445666666665556677777766543
No 79
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=20.34 E-value=3.9e+02 Score=22.48 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHH-HHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCC----CCccchhhHHHHHHHhCC
Q 015120 94 TNARDLINVLED-AIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPG----FGERKSQYLDDIAILTGG 164 (413)
Q Consensus 94 ~~~~~~~~~le~-i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~----~g~~~~~~le~la~~tG~ 164 (413)
++.+++.+.+++ +.+.+.-++++.+.+-+..-+.+- +.+... -..|-.|+ ++..+...++++..++|.
T Consensus 43 t~~eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~--~~~~~~-PaIieIP~k~~~y~~~~d~i~~~~~~~~~~ 115 (115)
T TIGR01101 43 TTVSEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVD--AHTRSI-PAVLEIPSKDHPYDASKDSILRRARGMFNP 115 (115)
T ss_pred CCHHHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHH--hcCCcC-CEEEEECCCCCCCCCcccHHHHHHHHHcCC
Confidence 456788888888 555667788888888777766643 223222 22334443 566667888888888773
No 80
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.19 E-value=2.1e+02 Score=26.62 Aligned_cols=12 Identities=33% Similarity=0.648 Sum_probs=8.3
Q ss_pred ccccCchHHHHH
Q 015120 277 IVVGGGCTLLRL 288 (413)
Q Consensus 277 vVpGGGa~e~~l 288 (413)
|+.|||++.+-+
T Consensus 174 f~~Gg~v~~~Gl 185 (206)
T PRK10884 174 FMYGGGVAGIGL 185 (206)
T ss_pred HHHchHHHHHHH
Confidence 777777766554
No 81
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=20.02 E-value=96 Score=28.17 Aligned_cols=41 Identities=15% Similarity=0.377 Sum_probs=25.5
Q ss_pred ecCeeEEEecccCC-----CHHHHHHHHHHHHhcCCCEEEEeccCc
Q 015120 81 YENCKLLLVDKKIT-----NARDLINVLEDAIRGAYPILIIAEDIE 121 (413)
Q Consensus 81 ~~~~~Ili~d~~i~-----~~~~~~~~le~i~~~~~~lvI~~~~i~ 121 (413)
+.+|+++++|.+.. +.+.+..++..+.+.+..++++..+.+
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~ 196 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG 196 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45788888888743 234555666666555666666665544
Done!