Query 015121
Match_columns 413
No_of_seqs 265 out of 2155
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.1E-43 2.3E-48 353.1 37.7 301 108-412 12-318 (455)
2 PRK10367 DNA-damage-inducible 100.0 6.1E-40 1.3E-44 325.8 37.2 300 109-412 5-309 (441)
3 PRK10189 MATE family multidrug 100.0 8.9E-39 1.9E-43 320.5 40.1 299 112-412 28-336 (478)
4 PRK00187 multidrug efflux prot 100.0 5.3E-39 1.2E-43 321.7 38.4 299 109-412 6-313 (464)
5 PRK09575 vmrA multidrug efflux 100.0 4.1E-37 8.9E-42 307.4 38.1 302 104-412 6-312 (453)
6 PRK01766 multidrug efflux prot 100.0 3.2E-36 7E-41 301.8 37.9 302 107-412 6-316 (456)
7 TIGR00797 matE putative efflux 100.0 1.4E-30 3.1E-35 251.1 36.5 288 121-412 1-293 (342)
8 KOG1347 Uncharacterized membra 100.0 5.8E-30 1.3E-34 253.2 26.0 298 109-412 24-326 (473)
9 TIGR01695 mviN integral membra 99.9 2.5E-23 5.3E-28 211.2 36.6 292 115-412 2-301 (502)
10 PRK00187 multidrug efflux prot 99.9 3.5E-23 7.6E-28 207.5 26.3 210 108-317 231-444 (464)
11 TIGR02900 spore_V_B stage V sp 99.9 7.1E-22 1.5E-26 199.7 33.0 288 116-411 2-312 (488)
12 PRK15099 O-antigen translocase 99.9 4.6E-22 1E-26 197.1 30.5 274 115-398 3-282 (416)
13 PRK01766 multidrug efflux prot 99.9 5.6E-22 1.2E-26 198.8 26.0 209 108-318 234-443 (456)
14 PRK10189 MATE family multidrug 99.9 5.1E-21 1.1E-25 192.2 28.8 211 109-321 255-466 (478)
15 COG0534 NorM Na+-driven multid 99.9 1.2E-20 2.5E-25 188.1 27.2 213 106-321 234-447 (455)
16 TIGR01695 mviN integral membra 99.9 3.3E-19 7.2E-24 181.0 35.0 236 109-351 219-457 (502)
17 PRK09575 vmrA multidrug efflux 99.9 2.4E-20 5.2E-25 186.6 25.8 206 109-317 230-436 (453)
18 PF03023 MVIN: MviN-like prote 99.8 1.2E-17 2.5E-22 166.7 33.7 208 109-318 194-404 (451)
19 PF03023 MVIN: MviN-like prote 99.8 4.3E-17 9.3E-22 162.6 34.1 265 143-412 5-276 (451)
20 PRK10367 DNA-damage-inducible 99.8 6.9E-18 1.5E-22 168.0 26.1 200 110-317 229-431 (441)
21 COG0728 MviN Uncharacterized m 99.8 6.3E-16 1.4E-20 152.7 37.0 241 110-356 229-472 (518)
22 PF01554 MatE: MatE; InterPro 99.8 5.7E-20 1.2E-24 157.8 6.7 161 121-283 1-162 (162)
23 TIGR02900 spore_V_B stage V sp 99.8 1E-16 2.3E-21 162.0 29.5 203 109-317 221-434 (488)
24 COG0728 MviN Uncharacterized m 99.8 1.2E-15 2.6E-20 150.8 35.8 295 113-409 7-307 (518)
25 PRK15099 O-antigen translocase 99.7 4.4E-15 9.5E-20 147.2 26.1 199 109-316 211-411 (416)
26 PF01943 Polysacc_synt: Polysa 99.7 1E-13 2.2E-18 128.8 33.7 266 116-397 2-270 (273)
27 PRK10459 colanic acid exporter 99.7 2.1E-14 4.5E-19 145.5 30.5 227 109-348 203-431 (492)
28 COG2244 RfbX Membrane protein 99.7 6.6E-14 1.4E-18 141.4 30.6 195 108-310 208-403 (480)
29 PRK10459 colanic acid exporter 99.6 2.1E-13 4.5E-18 138.2 29.6 265 113-397 5-273 (492)
30 COG2244 RfbX Membrane protein 99.5 5.2E-12 1.1E-16 127.6 27.0 271 112-399 5-280 (480)
31 PF13440 Polysacc_synt_3: Poly 99.5 9E-11 1.9E-15 107.7 32.9 243 132-397 3-249 (251)
32 TIGR00797 matE putative efflux 99.3 3.9E-11 8.4E-16 115.6 17.1 131 108-240 211-341 (342)
33 KOG1347 Uncharacterized membra 99.0 4.9E-10 1.1E-14 111.6 8.0 209 109-319 243-454 (473)
34 PF14667 Polysacc_synt_C: Poly 98.9 3.2E-07 6.9E-12 76.9 19.2 110 237-355 2-111 (146)
35 PF07260 ANKH: Progressive ank 98.8 1.3E-05 2.7E-10 73.7 27.4 256 111-377 9-285 (345)
36 PF04506 Rft-1: Rft protein; 98.6 1.3E-05 2.7E-10 81.5 23.0 202 113-317 253-470 (549)
37 KOG2864 Nuclear division RFT1 98.3 0.0003 6.4E-09 67.7 22.6 200 113-316 239-448 (530)
38 PF01554 MatE: MatE; InterPro 97.8 1.2E-05 2.7E-10 68.3 2.8 70 341-412 1-70 (162)
39 PF01943 Polysacc_synt: Polysa 97.2 0.003 6.4E-08 58.2 10.2 71 109-179 201-272 (273)
40 PF13440 Polysacc_synt_3: Poly 95.7 0.074 1.6E-06 48.2 9.6 65 114-178 184-250 (251)
41 COG4267 Predicted membrane pro 95.3 2.9 6.3E-05 40.1 23.6 133 166-316 78-210 (467)
42 PF04506 Rft-1: Rft protein; 94.8 1.9 4.1E-05 44.3 17.1 66 332-397 252-321 (549)
43 KOG2864 Nuclear division RFT1 92.3 13 0.00027 36.9 20.2 285 115-412 10-320 (530)
44 COG4267 Predicted membrane pro 91.3 9.6 0.00021 36.7 14.4 119 185-309 319-438 (467)
45 KOG0569 Permease of the major 60.3 2E+02 0.0043 29.2 19.9 52 262-317 402-453 (485)
46 PF07260 ANKH: Progressive ank 56.8 64 0.0014 30.6 8.0 71 327-397 5-78 (345)
47 PF05975 EcsB: Bacterial ABC t 55.0 2.1E+02 0.0047 27.9 16.8 38 184-221 89-126 (386)
48 PF04505 Dispanin: Interferon- 48.9 89 0.0019 23.1 6.4 38 168-205 36-73 (82)
49 TIGR01299 synapt_SV2 synaptic 42.0 4.8E+02 0.01 28.2 21.6 20 164-183 213-232 (742)
50 PF03631 Virul_fac_BrkB: Virul 40.3 2.9E+02 0.0062 25.1 21.6 140 167-308 86-244 (260)
51 KOG1305 Amino acid transporter 34.1 4.8E+02 0.01 25.9 13.3 30 183-212 223-252 (411)
52 COG4214 XylH ABC-type xylose t 33.6 4.2E+02 0.0091 25.7 9.6 108 289-412 174-281 (394)
53 PF01102 Glycophorin_A: Glycop 30.9 85 0.0018 25.2 4.1 26 292-317 66-91 (122)
54 PF03904 DUF334: Domain of unk 30.4 2.8E+02 0.0061 24.8 7.4 39 183-222 141-179 (230)
55 PF14936 p53-inducible11: Tumo 30.3 3.5E+02 0.0075 23.1 10.3 136 174-317 33-173 (179)
56 PRK03612 spermidine synthase; 26.2 7.2E+02 0.016 25.5 22.9 28 119-146 20-48 (521)
57 COG4956 Integral membrane prot 26.0 5.7E+02 0.012 24.2 13.1 30 163-192 12-41 (356)
58 PF05313 Pox_P21: Poxvirus P21 25.8 4.3E+02 0.0094 22.8 8.1 26 291-316 135-160 (189)
59 PRK05771 V-type ATP synthase s 24.7 8.4E+02 0.018 25.7 25.5 26 192-217 389-414 (646)
60 TIGR00383 corA magnesium Mg(2+ 23.8 2.1E+02 0.0046 26.9 6.3 16 304-319 302-317 (318)
61 PF04235 DUF418: Protein of un 23.2 4.4E+02 0.0095 21.9 12.1 27 185-211 10-36 (163)
62 PF06800 Sugar_transport: Suga 21.4 6.6E+02 0.014 23.3 10.3 25 288-312 214-238 (269)
63 PF04144 SCAMP: SCAMP family; 20.0 5.6E+02 0.012 21.9 14.0 49 250-298 84-134 (177)
64 PTZ00370 STEVOR; Provisional 20.0 94 0.002 28.8 2.7 19 300-318 264-282 (296)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.1e-43 Score=353.05 Aligned_cols=301 Identities=25% Similarity=0.304 Sum_probs=284.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Q 015121 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (413)
Q Consensus 108 ~~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 187 (413)
..++.|+++++++|++++++++.+++++|++++||+|++++|+.++++++..+...+..|++.|+++++||++|+||+++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 44466999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHH
Q 015121 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (413)
Q Consensus 188 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 267 (413)
+++..++++.+.+++++++.++.+.+.++++.+++. ++|+.+.+..|+++..++.|+..++.++.+++|+.|++|.++
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGA--PAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 999999999999999999999999999999999976 667999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhh-hc-cchHHHHHHHHHHHHHHHHHHHHHHhhccc--c--cccccCCChHHHHHHHHHhHH
Q 015121 268 KALVVASAVNGIGDIVLCRF-LG-YGIAGAAWATMASQVIAAYMMIINLNQKGY--N--AFAISIPLPSELLAIFELAAP 341 (413)
Q Consensus 268 ~~~~i~~i~~i~l~~~li~~-~~-~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~--~--~~~~~~~~~~~~~~~l~~~~p 341 (413)
+..++++++|+++||+|+++ ++ +|+.|+++||.+++++.++++++++.|+++ . ..+..+++++.+++++++|+|
T Consensus 170 ~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p 249 (455)
T COG0534 170 YILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLP 249 (455)
T ss_pred HHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhccc
Confidence 99999999999999999988 57 999999999999999999999999977652 2 234458899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhccCCCchhccC
Q 015121 342 VFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGC 412 (413)
Q Consensus 342 ~~~~~~~~~~~~~v~~~~~~~lg~~~laa~~i~~~l~~l~~~~~~~l~~a~~~~vg~~~~Ga~~~~~~~r~ 412 (413)
.+++...+...+.+.+.+++++|++.+|+|+++.++.++.++++.|+++|+++++| +++|++| .+++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG-~~~Ga~~-~~~a~~ 318 (455)
T COG0534 250 IFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVG-QNLGAGN-YKRARR 318 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCC-HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 8899886 577765
No 2
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=6.1e-40 Score=325.85 Aligned_cols=300 Identities=20% Similarity=0.258 Sum_probs=275.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Q 015121 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (413)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~-g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 187 (413)
+++.|+++++++|.++++++..+++++|+.++||+ |++++|+++++.++.++...+..+++.+.++++||++|+||+|+
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 45679999999999999999999999999999998 67799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHH
Q 015121 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (413)
Q Consensus 188 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 267 (413)
+++..++++.+++++++++.++...+.++++.+++. |+|+.+.+.+|+++..++.|+..+..++++++|+.|+++.++
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 162 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGG--SEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPV 162 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999998888899999999965 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccc--cCCC-hHHHHHHHHHhHHHH
Q 015121 268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG-YNAFAI--SIPL-PSELLAIFELAAPVF 343 (413)
Q Consensus 268 ~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~-~~~~~~--~~~~-~~~~~~~l~~~~p~~ 343 (413)
+..+++.++|+++|++|++.+++|+.|+++||.+++++.+++.++++.+++ +++.+. .+++ ++.+|+++++|+|.+
T Consensus 163 ~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~ 242 (441)
T PRK10367 163 ILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIM 242 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHH
Confidence 999999999999999999988999999999999999999888777775532 222211 2233 357899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhccCCCchhccC
Q 015121 344 VMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGC 412 (413)
Q Consensus 344 ~~~~~~~~~~~v~~~~~~~lg~~~laa~~i~~~l~~l~~~~~~~l~~a~~~~vg~~~~Ga~~~~~~~r~ 412 (413)
+....+.+.+.+.+.+++++|++++|||++..++.++.++++.|+++|+++++| +++|++| .+++|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg-~~~Ga~~-~~~a~~ 309 (441)
T PRK10367 243 LRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSG-QAYGARD-GSQLLD 309 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHcCCC-HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 7899885 677765
No 3
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=8.9e-39 Score=320.47 Aligned_cols=299 Identities=18% Similarity=0.190 Sum_probs=274.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHH
Q 015121 112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQ 191 (413)
Q Consensus 112 ~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~ 191 (413)
.|+++++++|.++++++..+++++|+.++|++|++++|+++++.++..+...+..|++.+.+++++|++|+||+|++++.
T Consensus 28 ~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~~ 107 (478)
T PRK10189 28 WREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARAA 107 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHHHHH
Q 015121 192 ISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALV 271 (413)
Q Consensus 192 ~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 271 (413)
.++++.++++++++++++.+.++++++.++.++.|+|+.+.+..|+++..++.|+..+..++.+++|+.|+++.++++++
T Consensus 108 ~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~ 187 (478)
T PRK10189 108 ARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLING 187 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHH
Confidence 99999999999999999999999999999953348899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHhh----hccchHHHHHHHHHHHHHHHHHHHHHHhhc-c-cccccc----cCCChHHHHHHHHHhHH
Q 015121 272 VASAVNGIGDIVLCRF----LGYGIAGAAWATMASQVIAAYMMIINLNQK-G-YNAFAI----SIPLPSELLAIFELAAP 341 (413)
Q Consensus 272 i~~i~~i~l~~~li~~----~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~-~-~~~~~~----~~~~~~~~~~~l~~~~p 341 (413)
+..++|++++++|++. +++|+.|+++|+.+++++.+++.++++.++ + ..+.++ .+++++.+++++++|+|
T Consensus 188 ~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P 267 (478)
T PRK10189 188 GMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGIP 267 (478)
T ss_pred HHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhcc
Confidence 9999999999999975 379999999999999999988877666543 1 122221 23578999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhccCCCchhccC
Q 015121 342 VFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGC 412 (413)
Q Consensus 342 ~~~~~~~~~~~~~v~~~~~~~lg~~~laa~~i~~~l~~l~~~~~~~l~~a~~~~vg~~~~Ga~~~~~~~r~ 412 (413)
.+++.......+.+.+.+++++|++++|||+++.++.++.+++..|+++|+++++| +++|+++ .+++|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg-~~~Ga~~-~~~a~~ 336 (478)
T PRK10189 268 ASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITG-TRLGKGQ-IAQAER 336 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCC-HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 7899886 566664
No 4
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=5.3e-39 Score=321.68 Aligned_cols=299 Identities=18% Similarity=0.202 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHH
Q 015121 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV 188 (413)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 188 (413)
++++|+++++++|.+++++++.+++++|+.++||+|++++|+++++.++.+++..+..|++++..++++|++|+||+|++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~ 85 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEGA 85 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhH
Confidence 34679999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHH
Q 015121 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLK 268 (413)
Q Consensus 189 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 268 (413)
++.+++++.+.++++++..++++ +.++++.+++. |+|+.+.+..|+++..++.|+..+...+++++|+.|+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~--~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 86 TRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQ--APQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999888765 67999999965 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhhh----ccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cccc----cccCCChHHHHHHHHHh
Q 015121 269 ALVVASAVNGIGDIVLCRFL----GYGIAGAAWATMASQVIAAYMMIINLNQKG-YNAF----AISIPLPSELLAIFELA 339 (413)
Q Consensus 269 ~~~i~~i~~i~l~~~li~~~----~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~-~~~~----~~~~~~~~~~~~~l~~~ 339 (413)
.+++..++|+++||+|+++. ++|+.|+++|+.+++++..+.+++++++++ ..+. ++.+++++.+|++++++
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg 242 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLG 242 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhh
Confidence 99999999999999999753 599999999999999988877766665432 2212 22356788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhccCCCchhccC
Q 015121 340 APVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGC 412 (413)
Q Consensus 340 ~p~~~~~~~~~~~~~v~~~~~~~lg~~~laa~~i~~~l~~l~~~~~~~l~~a~~~~vg~~~~Ga~~~~~~~r~ 412 (413)
+|.+++.+.+...+.+++.+++++|++++|+++++.++..+.++++.|++++.++++| +++|++| .+++|+
T Consensus 243 ~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvg-q~~Ga~~-~~~~~~ 313 (464)
T PRK00187 243 LPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVG-QHYGAGR-LLEARR 313 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCC-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 7899886 566664
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=4.1e-37 Score=307.41 Aligned_cols=302 Identities=17% Similarity=0.161 Sum_probs=276.4
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015121 104 ADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTN 182 (413)
Q Consensus 104 ~~~~~~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~-g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~ 182 (413)
.+++.. |+++++++|.+++++++.+++++|+.++|++ |++++++++++.++.++...+..+++.+..++++|++|+
T Consensus 6 ~~~~~~---k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga 82 (453)
T PRK09575 6 MNQSIY---RTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGE 82 (453)
T ss_pred ccCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344454 9999999999999999999999999999995 999999999999999999988899999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCC
Q 015121 183 RDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKD 262 (413)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~ 262 (413)
||+|++++.+++++.+.++++++++++.+.++++++.+++. |+++.+.+..|+++..++.|+..+...+..++|+.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~--~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~ 160 (453)
T PRK09575 83 GDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGA--EGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDES 160 (453)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999965 7889999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cccc--cccCCChHHHHHHHHHh
Q 015121 263 SWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG-YNAF--AISIPLPSELLAIFELA 339 (413)
Q Consensus 263 ~~~~~~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~-~~~~--~~~~~~~~~~~~~l~~~ 339 (413)
++.+++.++++.++|+++|++|++.+++|+.|+++|+.+++++..++.++++++++ ..++ +..+++++.+|+++++|
T Consensus 161 ~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig 240 (453)
T PRK09575 161 PNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLG 240 (453)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhC
Confidence 99999999999999999999999888999999999999999999988777765443 2222 22356788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhccCCCchhccC
Q 015121 340 APVFVMMMSKVAFFTLLTYFATSMGT-ITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGC 412 (413)
Q Consensus 340 ~p~~~~~~~~~~~~~v~~~~~~~lg~-~~laa~~i~~~l~~l~~~~~~~l~~a~~~~vg~~~~Ga~~~~~~~r~ 412 (413)
+|.+++...+.....+...+++++|+ +++|+|++..++..+.+++..|++.+.++++| +++|++| .+++|+
T Consensus 241 ~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg-~~~Ga~~-~~~~~~ 312 (453)
T PRK09575 241 SSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVS-YYFGARQ-YDNIKK 312 (453)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHhcCCC-hHHHHH
Confidence 99999999999999999999999985 68999999999999999999999999999999 7899886 567665
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=3.2e-36 Score=301.76 Aligned_cols=302 Identities=18% Similarity=0.152 Sum_probs=276.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHH
Q 015121 107 SIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186 (413)
Q Consensus 107 ~~~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 186 (413)
..++++|+++++++|.++++++..+++.+|+.+++++|++++++++.+.++..+...+..|++.+..+.++|++|++|+|
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 44667799999999999999999999999999999999999999999999888878888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHH
Q 015121 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (413)
Q Consensus 187 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 266 (413)
++++.+++++.+.++++++++++++.++++++.+++. |+|+.+.+..|+++..++.|+..+..++++++++.|+++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNL--EPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 9999999999999999999999999999999999965 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhh----hccchHHHHHHHHHHHHHHHHHHHHHHhhcccc-c----ccccCCChHHHHHHHH
Q 015121 267 LKALVVASAVNGIGDIVLCRF----LGYGIAGAAWATMASQVIAAYMMIINLNQKGYN-A----FAISIPLPSELLAIFE 337 (413)
Q Consensus 267 ~~~~~i~~i~~i~l~~~li~~----~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~~-~----~~~~~~~~~~~~~~l~ 337 (413)
++.++++.++|++++++|++. +.+|+.|+++++.+++++..++.+++++|++.. . .++.+++++.+|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 999999999999999999864 468999999999999999999888887654321 1 1223567889999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhccCCCchhccC
Q 015121 338 LAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGC 412 (413)
Q Consensus 338 ~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~laa~~i~~~l~~l~~~~~~~l~~a~~~~vg~~~~Ga~~~~~~~r~ 412 (413)
+++|.+++...+...+.++..+++++|++++|++++..++.++++.++.|++.+.++++| +++|++| .+++|+
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~-~~~Ga~~-~~~~~~ 316 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVG-FELGAGR-TLDARQ 316 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCC-HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 7888886 566664
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.4e-30 Score=251.13 Aligned_cols=288 Identities=24% Similarity=0.304 Sum_probs=262.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Q 015121 121 PATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGL 200 (413)
Q Consensus 121 P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~ 200 (413)
|.++++++..++..+|+.+++++|++++++++++.++.++...+..+++++..+.+++++|++|+|++++..++.+.+..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHh
Q 015121 201 ACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIG 280 (413)
Q Consensus 201 ~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~i~~i~l 280 (413)
+++++++++.+++++++..+++. |++..+.+..|+++++++.++..+..+..+++++.|+++.+++..++..++++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~ 158 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGA--DGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIIL 158 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999864 6778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hhc-cchHHHHHHHHHHHHHHHHHHHHHHhhccccccc---ccCCChHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015121 281 DIVLCR-FLG-YGIAGAAWATMASQVIAAYMMIINLNQKGYNAFA---ISIPLPSELLAIFELAAPVFVMMMSKVAFFTL 355 (413)
Q Consensus 281 ~~~li~-~~~-~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~~~~~---~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~v 355 (413)
+++++. .++ +|+.|+++++.+++++..++.+++++|+...+.+ ..+++++.+|+++++++|..+..+..++.+.+
T Consensus 159 ~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~ 238 (342)
T TIGR00797 159 NYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFAL 238 (342)
T ss_pred hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 999987 567 8899999999999999999888777653322222 34567889999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhccCCCchhccC
Q 015121 356 LTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGC 412 (413)
Q Consensus 356 ~~~~~~~lg~~~laa~~i~~~l~~l~~~~~~~l~~a~~~~vg~~~~Ga~~~~~~~r~ 412 (413)
++.+++.+|++++++|+++.++.++...++.+++.+..|.++ +++|++ +.+++|+
T Consensus 239 ~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~-~~~~~~~ 293 (342)
T TIGR00797 239 LALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVG-QALGAG-DPKRAKE 293 (342)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCC-CHHHHHH
Confidence 999999999999999999999999999999999999999999 667655 4566554
No 8
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.97 E-value=5.8e-30 Score=253.21 Aligned_cols=298 Identities=18% Similarity=0.175 Sum_probs=275.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhccCHHH
Q 015121 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNM-SYIFMFLSIATSNLVATSLTNRDKNE 187 (413)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~-~~~~~gl~~~~~~~~s~~~g~~~~~~ 187 (413)
+.|.|++++++.|+++..+.+++.+.+++.++||+|+.++++.+++....+.. ..+..|+..+.+++++|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 78889999999999999999999999999999999999999999999998886 66778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHH
Q 015121 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (413)
Q Consensus 188 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 267 (413)
.+.+.+++..+....+++...++ .+.++++..+++ |+++.+.+..|.++++++++.+........++|+|++..+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~lgq--~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLLGQ--DPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHhCC--ChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999999999999887 588999999966 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cc-cccccCCChHHHHHHHHHhHHHHHH
Q 015121 268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG-YN-AFAISIPLPSELLAIFELAAPVFVM 345 (413)
Q Consensus 268 ~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~-~~-~~~~~~~~~~~~~~~l~~~~p~~~~ 345 (413)
+......++|+++++++++.+++|+.|++++..+++++...++..|..... .. +-.+... ++.+++++++++|.+++
T Consensus 181 ~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~m 259 (473)
T KOG1347|consen 181 VIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVM 259 (473)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchhe
Confidence 999999999999999999999999999999999999999999988886543 11 1122233 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhccCCCchhccC
Q 015121 346 MMSKVAFFTLLTYFATSMG--TITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGC 412 (413)
Q Consensus 346 ~~~~~~~~~v~~~~~~~lg--~~~laa~~i~~~l~~l~~~~~~~l~~a~~~~vg~~~~Ga~~~~~~~r~ 412 (413)
.+.|||.+++...+.+.++ ..++++.+|..++....++++.+++.+++++++ +.+|+++ ++++|.
T Consensus 260 iclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~-neLGag~-p~~ar~ 326 (473)
T KOG1347|consen 260 ICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVS-NELGAGK-PKRARV 326 (473)
T ss_pred eHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH-HHHcCCC-hhhhhh
Confidence 9999999999999999997 589999999999999999999999999999999 8899886 566653
No 9
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.94 E-value=2.5e-23 Score=211.18 Aligned_cols=292 Identities=11% Similarity=-0.009 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-cChhhh-hhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHhhccCHHHHHH
Q 015121 115 IMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLEL-AALGPGTVLCDNMSYIFM--FLSIATSNLVATSLTNRDKNEVQH 190 (413)
Q Consensus 115 i~~~~~P~~l~~~~~~~~~~id~~~ig~-~g~~~l-a~~~~~~~i~~~~~~~~~--gl~~~~~~~~s~~~g~~~~~~~~~ 190 (413)
+.|.+.-.+++++++.+++++|..++++ +|++++ ++++.+.++.+.+..+.. |++.+..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5678889999999999999999999999 799999 799999998877765543 57777666665543222 57777
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHHH
Q 015121 191 QISVLLFVGLAC-GFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKA 269 (413)
Q Consensus 191 ~~~~~l~~~~~~-~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 269 (413)
.+..++....++ +++..++.+++++++..++..+.+++..+.+..|++++.++.++..+..+.++++|+.|+++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 776766655544 4455677778899999988433366778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHhhhccchHHHH--HHHHHHHHHHHHHHHHHHhhcccccccccCCChHHHHHHHHHhHHHHHHHH
Q 015121 270 LVVASAVNGIGDIVLCRFLGYGIAGAA--WATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMM 347 (413)
Q Consensus 270 ~~i~~i~~i~l~~~li~~~~~Gi~Gaa--~a~~is~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~ 347 (413)
+++..+++++..+++ ..++|..|++ +++.+++.+..++.+++++|++.+.....+.+++.+|+++++++|..+...
T Consensus 160 ~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~ 237 (502)
T TIGR01695 160 PILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFRDPGLKRFLKLFLPTTLGSS 237 (502)
T ss_pred HHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCCChhHHHHHHHHHHHHHHHH
Confidence 999988877754343 3689999998 999999999988887777654422222224567889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHhhhhhhhccCCCchhccC
Q 015121 348 SKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTV-WGEPLAQTAQSFMPEFLYGMNRNLAKHGC 412 (413)
Q Consensus 348 ~~~~~~~v~~~~~~~lg~~~laa~~i~~~l~~l~~~-~~~~l~~a~~~~vg~~~~Ga~~~~~~~r~ 412 (413)
...+...++..+.+.+|.+++++|+.+.++.++... +..+++++..|+++ +++|++| .+++|+
T Consensus 238 ~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s-~~~~~~~-~~~~~~ 301 (502)
T TIGR01695 238 ASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLS-RHASEGN-WNELRD 301 (502)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCC-HHHHHH
Confidence 999999999988888899999999999999988754 67899999999999 5676654 555553
No 10
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.92 E-value=3.5e-23 Score=207.52 Aligned_cols=210 Identities=16% Similarity=0.092 Sum_probs=195.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Q 015121 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (413)
Q Consensus 108 ~~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 187 (413)
.++.+|+++++++|.++.++++.....+|+.+++++|++++|+++++.++..+...+..|++.+.+++++|++|+||+|+
T Consensus 231 ~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~ 310 (464)
T PRK00187 231 SRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLE 310 (464)
T ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCcc---chHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCCh
Q 015121 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNV---HILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSW 264 (413)
Q Consensus 188 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~---~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 264 (413)
+++..++++.++++++++.+++++++.+++..++.+++|+ |+.+.+..|+++.+++.++..++.++.+++||.|+++
T Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~ 390 (464)
T PRK00187 311 ARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDAR 390 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccH
Confidence 9999999999999999999999999999999999532233 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015121 265 GPLKALVVAS-AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (413)
Q Consensus 265 ~~~~~~~i~~-i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~ 317 (413)
.+++..++.. +++++++|++++.+++|+.|+++++.+++++..++....++.+
T Consensus 391 ~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 391 TTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 8999999999988899999999999999999887776666443
No 11
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.91 E-value=7.1e-22 Score=199.73 Aligned_cols=288 Identities=14% Similarity=0.091 Sum_probs=237.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCHHHHHHHHH
Q 015121 116 MKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQHQIS 193 (413)
Q Consensus 116 ~~~~~P~~l~~~~~~~~~~id~~~ig~-~g~~~la~~~~~~~i~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 193 (413)
+|.+.|.++++++..+.+++|+.+++| +|++++|+++.+..+..+...+. .|++.+....++|+.|++|++++++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 69999999999999988887766 5899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 015121 194 VLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVA 273 (413)
Q Consensus 194 ~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~ 273 (413)
.++.+.++.+++++++++.+++++...+++ |++. ..++++..+..++..+....+.++|+.++.+..+..++++
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~--~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLK--DERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcC--ChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 999999999999999988899998887754 3332 3578888999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHh-----hhccchHHHHHHHHHHHHHHHHHHHHHHhhccccc--c---cccCCChHHHHHHHHHhHHHH
Q 015121 274 SAVNGIGDIVLCR-----FLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNA--F---AISIPLPSELLAIFELAAPVF 343 (413)
Q Consensus 274 ~i~~i~l~~~li~-----~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~~~--~---~~~~~~~~~~~~~l~~~~p~~ 343 (413)
.+++++++..+++ ...+|+.|+++++.++.++..++.+++++|+++.+ . ++.+.+++.+|+++++++|..
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~ 235 (488)
T TIGR02900 156 QIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLT 235 (488)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHH
Confidence 9999877666553 23577889999999999999988777665443211 1 122345778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc----C---HHHHHH---H-HHHHHHHHHHHHhHHHHHHHHHHhhhhhhhccCCCchhcc
Q 015121 344 VMMMSKVAFFTLLTYFATSM----G---TITLAA---H-QVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHG 411 (413)
Q Consensus 344 ~~~~~~~~~~~v~~~~~~~l----g---~~~laa---~-~i~~~l~~l~~~~~~~l~~a~~~~vg~~~~Ga~~~~~~~r 411 (413)
++.+..++...+++.++++. | ..+.+. + +++.++..+...+..+++.+..|+++ +++|++| .++.|
T Consensus 236 l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s-~~~~~~~-~~~~~ 312 (488)
T TIGR02900 236 LSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDIS-EAMAKKN-YSSIE 312 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHH-HHHHcCC-HHHHH
Confidence 99999999999999888764 2 222222 2 35566777788888999999999999 5676554 45544
No 12
>PRK15099 O-antigen translocase; Provisional
Probab=99.91 E-value=4.6e-22 Score=197.06 Aligned_cols=274 Identities=9% Similarity=-0.005 Sum_probs=231.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-cChhhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCHHHHHHHH
Q 015121 115 IMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDKNEVQHQI 192 (413)
Q Consensus 115 i~~~~~P~~l~~~~~~~~~~id~~~ig~-~g~~~la~~~~~~~i~~~~~~~-~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 192 (413)
+.|.+.....+.++..+.+++-..++.+ +|++++|.++....+..++..+ ..|++++....++|+ ++|+|+.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5677888889999999999999999999 6999999999988888877666 478888888899987 78899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 015121 193 SVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVV 272 (413)
Q Consensus 193 ~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i 272 (413)
..++.+.++.+++++++.+.+++++...+++ +++ . ..++.+..+..++..+.....+.+|+.|+++.++...++
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~--~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~ 154 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFG--HTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIV 154 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--Chh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988865 443 2 355666666666778888999999999999999999999
Q ss_pred HHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhccccccc--ccCCChHHHHHHHHHhHHHHHHHHHHH
Q 015121 273 ASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFA--ISIPLPSELLAIFELAAPVFVMMMSKV 350 (413)
Q Consensus 273 ~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~~~~~--~~~~~~~~~~~~l~~~~p~~~~~~~~~ 350 (413)
+.++|+++ +++++. ..|+.|+++|+.+++.+..+..++++.|++..+.+ ..+++++.+|+++++|+|..++++..+
T Consensus 155 ~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~g~p~~~~~~~~~ 232 (416)
T PRK15099 155 GSLIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAGQLGKFTLMALITSVTLP 232 (416)
T ss_pred HHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 444432 24999999999999999988777776554322221 235678899999999999999999999
Q ss_pred HHHHHHHHHHH-hcCHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHhhhh
Q 015121 351 AFFTLLTYFAT-SMGTITLAAHQVMIQTLMM-CTVWGEPLAQTAQSFMPE 398 (413)
Q Consensus 351 ~~~~v~~~~~~-~lg~~~laa~~i~~~l~~l-~~~~~~~l~~a~~~~vg~ 398 (413)
+...+++.+++ .+|++++++|+++.++.+. ...+..+++++..|++++
T Consensus 233 i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~ 282 (416)
T PRK15099 233 VAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSR 282 (416)
T ss_pred HHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999996 7899999999999999885 488999999999999993
No 13
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.90 E-value=5.6e-22 Score=198.81 Aligned_cols=209 Identities=16% Similarity=0.113 Sum_probs=196.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Q 015121 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (413)
Q Consensus 108 ~~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 187 (413)
.++.+|+++++++|.+++.+.+.+...++..+++++|++++|+++++.++.++...+..|++.+.+++++|++|+||+++
T Consensus 234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~ 313 (456)
T PRK01766 234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLD 313 (456)
T ss_pred CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHH
Q 015121 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (413)
Q Consensus 188 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 267 (413)
+++..+.++.+++.++++.+++++.+++++..+|. +|+|+.+.+..|+++..+..++..++.+..+++||.|+++.++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 391 (456)
T PRK01766 314 ARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYT--DDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF 391 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence 99999999999999999999999999999999995 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015121 268 KALVVAS-AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG 318 (413)
Q Consensus 268 ~~~~i~~-i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~ 318 (413)
+..++.. ++++++.+++.+.+++|+.|+++++.+++++..++.++++++.+
T Consensus 392 ~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~ 443 (456)
T PRK01766 392 FITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQ 443 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 68999999988878899999999999999999998888876543
No 14
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=5.1e-21 Score=192.19 Aligned_cols=211 Identities=12% Similarity=0.112 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHH
Q 015121 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV 188 (413)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 188 (413)
++.+|+++++++|..+..++..+..++.+.+++++|++++|+++++.++..+...+..|++++.+++++|++|++|+|++
T Consensus 255 ~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a 334 (478)
T PRK10189 255 FAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQA 334 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 46679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHH
Q 015121 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLK 268 (413)
Q Consensus 189 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 268 (413)
++..+.++.++++.++.++++++++++++..+| ++|+|+.+.+..++++.++..++..++.+..+++||.||++.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lF--t~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~ 412 (478)
T PRK10189 335 ERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFY--TQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence 999999999999999999999999999999999 458999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 015121 269 ALVVAS-AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNA 321 (413)
Q Consensus 269 ~~~i~~-i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~~~ 321 (413)
++++.. ++.+++.+++.+..++|+.|++++..+++.+..+++++.+++.+|++
T Consensus 413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 998875 57788888887777899999999999999999998888887776655
No 15
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.88 E-value=1.2e-20 Score=188.09 Aligned_cols=213 Identities=17% Similarity=0.158 Sum_probs=199.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCH
Q 015121 106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDK 185 (413)
Q Consensus 106 ~~~~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 185 (413)
...++..|+++++++|..+.+++......+-+.+++++|++.+|+++++.++.++...+..|++++.+++++|++|+||+
T Consensus 234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~ 313 (455)
T COG0534 234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNY 313 (455)
T ss_pred CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 34457789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChH
Q 015121 186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWG 265 (413)
Q Consensus 186 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 265 (413)
|++++..+.++.+++++++..+++++++++++..+|.. |+|+.+.+..++++..+..++...+.+..+++||.||++.
T Consensus 314 ~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~--~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~ 391 (455)
T COG0534 314 KRARRAARLALKLSLLIALLIALLLLLFREPIISLFTT--DPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKI 391 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999954 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 015121 266 PLKALVVASA-VNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNA 321 (413)
Q Consensus 266 ~~~~~~i~~i-~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~~~ 321 (413)
+++.+++... +.+++.+++.... +|..|+|++..+++.+..++..+++++++|+.
T Consensus 392 ~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (455)
T COG0534 392 PFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRR 447 (455)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999764 5788888888655 99999999999999999999999998876543
No 16
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.87 E-value=3.3e-19 Score=180.95 Aligned_cols=236 Identities=16% Similarity=0.069 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCHHH
Q 015121 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSY-IFMFLSIATSNLVATSLTNRDKNE 187 (413)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~-~~~gl~~~~~~~~s~~~g~~~~~~ 187 (413)
++..|++++.++|..++.+...+...+|+.+.+.+|++++++++.+.++.++... +..+++.+..|.++|++|++|+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 3567999999999999999999999999999777899999999999999888765 457899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCC--ccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChH
Q 015121 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK--NVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWG 265 (413)
Q Consensus 188 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~--~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 265 (413)
+++.+++++.+...++++++++++++++++..++.+++ |+|....+..++++++++.++..+..+..+.+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 99999999999999999999999999999999997643 5678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCChHHHHHHHHHhHHHHHH
Q 015121 266 PLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVM 345 (413)
Q Consensus 266 ~~~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 345 (413)
+++..++..++|++++++++ +.+|+.|+++|+.+++.+..++..++++|+.. .....+..+++.|......++
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~as~~m 451 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLI--FPLGLVGIALATSAASMVSSVLLYLMLNRRLK-----GILPFGVLKVLAKLVIASAII 451 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcC-----cCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 56899999999999999999988888776521 122355667777777777666
Q ss_pred HHHHHH
Q 015121 346 MMSKVA 351 (413)
Q Consensus 346 ~~~~~~ 351 (413)
....++
T Consensus 452 ~~~~~~ 457 (502)
T TIGR01695 452 GGVLYL 457 (502)
T ss_pred HHHHHH
Confidence 655543
No 17
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.87 E-value=2.4e-20 Score=186.60 Aligned_cols=206 Identities=11% Similarity=0.084 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Q 015121 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSS-LELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (413)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~-~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 187 (413)
++.+|++++++.|..+......+...+.+.+++++|+ +++|+++++.++..+...+..|++.+..++++|++|+||+|+
T Consensus 230 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~ 309 (453)
T PRK09575 230 WSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDN 309 (453)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHH
Confidence 4567999999999999999999999999999999985 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHH
Q 015121 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (413)
Q Consensus 188 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 267 (413)
+++..+.++.+++..+++.+++++.+++++..+|.. +|+|+.+.+..|+++..++.++..+..+..+++||.|+++.++
T Consensus 310 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~-~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 388 (453)
T PRK09575 310 IKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNS-GDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKAL 388 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 999999999999999999999999999999999952 3678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015121 268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (413)
Q Consensus 268 ~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~ 317 (413)
+.++...++++++.+++. ..+|+.|+|+++.+++++..++.+++++++
T Consensus 389 ~~~~~~~~v~ip~~~ll~--~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 389 FISIGNMLIQLPFLFILP--KWLGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHHHHhHHHHHHHHHHHH--HHHCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999888888998888876 347999999999999999888887766553
No 18
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.84 E-value=1.2e-17 Score=166.66 Aligned_cols=208 Identities=19% Similarity=0.130 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCHHH
Q 015121 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNE 187 (413)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~ 187 (413)
.++.|++++...|.+++....++..++|+.+.+.+++.++++++.+..+.++...+. ..++++..|..++...++|.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 345699999999999999999999999999999999999999999999999987665 7899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc--CCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChH
Q 015121 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT--GSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWG 265 (413)
Q Consensus 188 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~--~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 265 (413)
.++..++.+...+.+.+|++++++.++++++++++ |..|.|..+....+++++++++|+..+...+...+.+++|+|.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 99999999999999999999999999999999986 5567788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015121 266 PLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG 318 (413)
Q Consensus 266 ~~~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~ 318 (413)
+++.++++.++|++++++++ +.+|..|.++|+.++.++..++++++++|+.
T Consensus 354 ~~~~~~~~~~lni~l~~~l~--~~~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLV--PFFGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999998887 7789999999999999999999999988774
No 19
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.82 E-value=4.3e-17 Score=162.57 Aligned_cols=265 Identities=11% Similarity=0.081 Sum_probs=227.6
Q ss_pred cChh-hhhhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 015121 143 GSSL-ELAALGPGTVLCDNMSYIFM--FLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALS 219 (413)
Q Consensus 143 ~g~~-~la~~~~~~~i~~~~~~~~~--gl~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~ 219 (413)
+|.. +..++.++..+-+++..+.. ++..+..|...+.. ++++|+.++..+..+.+..++.+.++++.+++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5644 56688999999988876553 58999999999998 89999999999999999999999999999999999999
Q ss_pred HhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhHHHHHhhhccc---hHHHH
Q 015121 220 AFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYG---IAGAA 296 (413)
Q Consensus 220 ~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~i~~i~l~~~li~~~~~G---i~Gaa 296 (413)
++..+.|++..+.+..+++++.+..++..+..++.+++|++++...+....++.++..++..+++ ....| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~--~~~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLL--SNSWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH--HHhcCchHHHHHH
Confidence 99766688999999999999999999999999999999999999999999888887755543333 35567 89999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 015121 297 WATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQ 376 (413)
Q Consensus 297 ~a~~is~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~laa~~i~~~ 376 (413)
+|..++.++..++.+...+|.+.+.....+...+++|++++...|..+......+...+++.+++.+++..+++.+.+.+
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~ 241 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQR 241 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 99999999999999998888765433333445567999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHhHHHHHHHHHHhhhhhhhccCCCchhccC
Q 015121 377 TLMMC-TVWGEPLAQTAQSFMPEFLYGMNRNLAKHGC 412 (413)
Q Consensus 377 l~~l~-~~~~~~l~~a~~~~vg~~~~Ga~~~~~~~r~ 412 (413)
+.++. .++..+++++..|.++++. +++|.++.|+
T Consensus 242 l~~lp~~i~~~~i~tv~~P~ls~~~--~~~d~~~~~~ 276 (451)
T PF03023_consen 242 LYQLPLGIFAVSISTVVFPKLSRLA--AEGDWEEFRK 276 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHH
Confidence 99987 5778899999999999543 5556665553
No 20
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.81 E-value=6.9e-18 Score=167.96 Aligned_cols=200 Identities=9% Similarity=-0.004 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHH
Q 015121 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQ 189 (413)
Q Consensus 110 ~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~ 189 (413)
+.+|++++++.|..+++++......+-+.+++++|++++|+++++.++.++...+..|++++.+++++|++|+||+|+++
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~ 308 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLL 308 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCC---CChHH
Q 015121 190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMK---DSWGP 266 (413)
Q Consensus 190 ~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~ 266 (413)
+..++++.++++++++++++++++++++..+| ++|+|+.+.+..++++..+..+......++.++++|.+ |++.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF--t~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~ 386 (441)
T PRK10367 309 DVWRAACRQSGIVALLFSLVYALAGEHIIALL--TSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNS 386 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHH
Confidence 99999999999999999999999999999999 45899999999999999876443334444444555555 49999
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015121 267 LKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (413)
Q Consensus 267 ~~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~ 317 (413)
++.+++...+ .++.. +.+|+.|++++..+++.+..+++.+.++++
T Consensus 387 ~~~~~~~~~~----~~~~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~ 431 (441)
T PRK10367 387 MAVAAAGFAL----TLLTL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH 431 (441)
T ss_pred HHHHHHHHHH----HHHHH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988887543 11222 467999999999999999999888776654
No 21
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.80 E-value=6.3e-16 Score=152.72 Aligned_cols=241 Identities=17% Similarity=0.066 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCHHHH
Q 015121 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEV 188 (413)
Q Consensus 110 ~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~ 188 (413)
++.|++.+...|+.++....++..++|+.+.+.+.+.+.+.+..+..++++...++ .++++...|..|+...++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 56799999999999999999999999999999999999999999999999998655 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc--CCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHH
Q 015121 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT--GSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (413)
Q Consensus 189 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~--~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 266 (413)
.+..+.++.+.+++.+|.++++.++++++...++ |..+++........++...++++++.+..++...+.+.+|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 9999999999999999999999999999999884 33456778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCChHHHHHHHHHhHHHHHHH
Q 015121 267 LKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMM 346 (413)
Q Consensus 267 ~~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~ 346 (413)
+++.+++.++|++++++++ +.+|..|.++++.++.++++.++++.++|+..... ...|.... ..|+.+-.+++.
T Consensus 389 ~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~---~~~~~~~~-~~k~~l~~~i~~ 462 (518)
T COG0728 389 MKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP---GRGWGLFL-ILKLLLASAIMA 462 (518)
T ss_pred hHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---cchhhHHH-HHHHHHHHHHHH
Confidence 9999999999999997777 77888999999999999999999998887643222 45666666 778777777777
Q ss_pred HHHHHHHHHH
Q 015121 347 MSKVAFFTLL 356 (413)
Q Consensus 347 ~~~~~~~~v~ 356 (413)
...+......
T Consensus 463 ~~~~~~~~~~ 472 (518)
T COG0728 463 AALLALLHLA 472 (518)
T ss_pred HHHHHHHHHH
Confidence 6666655444
No 22
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.80 E-value=5.7e-20 Score=157.75 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Q 015121 121 PATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGL 200 (413)
Q Consensus 121 P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~ 200 (413)
|.+++++++.+...+|+.+++++|++++++++++..+.++...+..|++.++.++++|++|++|+|++++.+++++.+..
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HHHHH
Q 015121 201 ACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVAS-AVNGI 279 (413)
Q Consensus 201 ~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~-i~~i~ 279 (413)
+++++++++.+++.+++..+++. |+|+.+.+..|+++..++.|+..+..+.++++++.|+++..++..++.. +++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGN--DPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSS--TTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhh--hHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999965 8889999999999999999999999999999999999999999999998 99999
Q ss_pred hHHH
Q 015121 280 GDIV 283 (413)
Q Consensus 280 l~~~ 283 (413)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 23
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.79 E-value=1e-16 Score=162.04 Aligned_cols=203 Identities=15% Similarity=0.177 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-C------hhhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015121 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-S------SLELAAL----GPGTVLCDNMSYIFMFLSIATSNLVA 177 (413)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~-g------~~~la~~----~~~~~i~~~~~~~~~gl~~~~~~~~s 177 (413)
++.+|++++.++|.+++++...+...+|+.+++++ + .++.+.+ +.+.++..+...+..+++.+..|.++
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s 300 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDIS 300 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45779999999999999999999999999999883 2 1122222 34456666666667889999999999
Q ss_pred HHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 015121 178 TSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAS 257 (413)
Q Consensus 178 ~~~g~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l 257 (413)
+.+|++|+++.++.+++.+.+...++++++++++.+++++..++.+ ++ .+..++++++++.++..+.....+++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~--~~----~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 301 EAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYG--RP----DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999865 32 25788999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015121 258 LGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (413)
Q Consensus 258 ~~~g~~~~~~~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~ 317 (413)
++.||++.+++..++..++|++++++++..+.+|+.|+++++.+++++..++..++.+|.
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998766789999999999999999999888887664
No 24
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.79 E-value=1.2e-15 Score=150.81 Aligned_cols=295 Identities=9% Similarity=-0.011 Sum_probs=245.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cChh-hhhhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHhhccCHHHH
Q 015121 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSL-ELAALGPGTVLCDNMSYIF--MFLSIATSNLVATSLTNRDKNEV 188 (413)
Q Consensus 113 k~i~~~~~P~~l~~~~~~~~~~id~~~ig~-~g~~-~la~~~~~~~i~~~~~~~~--~gl~~~~~~~~s~~~g~~~~~~~ 188 (413)
.+++|.++-....++++.+.+++...+++. +|.. ...++.++.++-|++--++ ..++++..|...++..+++.|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 678889999999999999999997777777 7875 5568899999999997666 45899999999999877777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHH
Q 015121 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK-NVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (413)
Q Consensus 189 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 267 (413)
++..+....+...+.+.++++..++++++...+.++. |++....+....+++.|.+++..+..++.+++++.++...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 8777777768888888888888899999995554432 233333688889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCChHHHHHHHHHhHHHHHHHH
Q 015121 268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMM 347 (413)
Q Consensus 268 ~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~ 347 (413)
+..++.++.-+...+++..+...-..+.++++.++-+++.++.+..++|.+....+....+-+.+|++++.-.|..+...
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~~~lk~~~~~~~p~~l~~s 246 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFLKLMLPALLGVS 246 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 99999888777555554433322467899999999999999999999987644333333444799999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHhhhhhhhccCCCchh
Q 015121 348 SKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCT-VWGEPLAQTAQSFMPEFLYGMNRNLAK 409 (413)
Q Consensus 348 ~~~~~~~v~~~~~~~lg~~~laa~~i~~~l~~l~~-~~~~~l~~a~~~~vg~~~~Ga~~~~~~ 409 (413)
..++...+++.+++.+.+..++.+..+.++.++.. ++..++++...|.++++. +++|.++
T Consensus 247 isQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~--~~~~~~~ 307 (518)
T COG0728 247 ISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHA--ANGDWPE 307 (518)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh--hcCChHH
Confidence 99999999999999999999999999999999995 999999999999999554 4444444
No 25
>PRK15099 O-antigen translocase; Provisional
Probab=99.71 E-value=4.4e-15 Score=147.23 Aligned_cols=199 Identities=14% Similarity=-0.033 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcChhhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhccCHH
Q 015121 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIG-QGSSLELAALGPGTVLCDNM-SYIFMFLSIATSNLVATSLTNRDKN 186 (413)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig-~~g~~~la~~~~~~~i~~~~-~~~~~gl~~~~~~~~s~~~g~~~~~ 186 (413)
++.+|+++++++|.+++++...+...+|+.+++ ++|++++|.|+.+.++.+.. ..+..+++++..|.++++ +|+|
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~ 287 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKR 287 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChH
Confidence 455799999999999999999999999999997 68999999999999997755 677789999999999995 6788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHH
Q 015121 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (413)
Q Consensus 187 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 266 (413)
+.++.+++.+.....++++.++++++++++++.++.++ .++.+.+++++++++.++...+..+...+.+.++.+..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~----~~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~ 363 (416)
T PRK15099 288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSN----KFTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFY 363 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999772 24557889999999998888888777777788888888
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 015121 267 LKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQ 316 (413)
Q Consensus 267 ~~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k 316 (413)
....+...+++++++++++ +.+|..|+++++.+++.+.+++......+
T Consensus 364 ~~~~~~~~~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 364 ILAEVSQFTLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999988 77899999999999999999877655543
No 26
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.71 E-value=1e-13 Score=128.75 Aligned_cols=266 Identities=13% Similarity=0.064 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCHHHHHHHHH
Q 015121 116 MKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQHQIS 193 (413)
Q Consensus 116 ~~~~~P~~l~~~~~~~~~~id~~~ig~-~g~~~la~~~~~~~i~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 193 (413)
+|.+....+++++..+.+++-..++.| +|+++.|.++....+.+++..+. .|++.+.....++...+ +++.+.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 567788889999999999999999999 79999999999999988887764 78888888888876432 345555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 015121 194 VLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVA 273 (413)
Q Consensus 194 ~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~ 273 (413)
..+....+.+++...+... ...++. ++. ...+........++.........++++.++.+......++.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~-----~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLI-----ASFFGN---PSL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIIS 148 (273)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHcCC---chH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444444433333322 223322 222 12222222222257888889999999999999999999998
Q ss_pred HHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCChHHHHHHHHHhHHHHHHHHHHHHHH
Q 015121 274 SAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFF 353 (413)
Q Consensus 274 ~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~ 353 (413)
.++..++..+++. .+.++.+..++..++..+..++...+.+|+.+ .++...+++..+++++.++|..+..+..++..
T Consensus 149 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 149 SLLSLLLILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776656553 34458999999999999998888888876542 44445568999999999999999999999999
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 015121 354 TLLTYFATSM-GTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMP 397 (413)
Q Consensus 354 ~v~~~~~~~l-g~~~laa~~i~~~l~~l~~~~~~~l~~a~~~~vg 397 (413)
.++..+++.+ |.++++.|+++.++......+..++.++..|.++
T Consensus 226 ~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s 270 (273)
T PF01943_consen 226 QIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLS 270 (273)
T ss_pred HhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888 9999999999999999999999999999999987
No 27
>PRK10459 colanic acid exporter; Provisional
Probab=99.70 E-value=2.1e-14 Score=145.52 Aligned_cols=227 Identities=15% Similarity=0.057 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCHH
Q 015121 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKN 186 (413)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~-~g~~~la~~~~~~~i~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~ 186 (413)
+++.|++++++.|.+.+++...++..+|+.++|+ +|++++|.|+.+.++.+...... ..++....|..++. ++|.+
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 3567999999999999999999999999999999 59999999999999987765444 45777888998885 67889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHH
Q 015121 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (413)
Q Consensus 187 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 266 (413)
+.++.+++.+.+...+++|+++++.+++++++.++++++ +..+...+++++++..+..+......++++.|++|..
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~----~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~ 356 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK----WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLS 356 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence 999999999999999999999999999999999987732 6778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCChHHHHHHHHHhHHHHHHH
Q 015121 267 LKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMM 346 (413)
Q Consensus 267 ~~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~ 346 (413)
++.+++..+++++..+++. ..+|+.|+++++.+++.+...+..++..|+.. .. +.++.++++.+..+...++.
T Consensus 357 ~~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~a~~~m~ 429 (492)
T PRK10459 357 FKWNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIKPVI-GL----SYRQYILSIWKPFYLSLPML 429 (492)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC----CHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888766665 56799999999999999988888887755421 11 12234455555444444444
Q ss_pred HH
Q 015121 347 MS 348 (413)
Q Consensus 347 ~~ 348 (413)
..
T Consensus 430 ~~ 431 (492)
T PRK10459 430 IV 431 (492)
T ss_pred HH
Confidence 33
No 28
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.68 E-value=6.6e-14 Score=141.41 Aligned_cols=195 Identities=19% Similarity=0.173 Sum_probs=177.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHH
Q 015121 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186 (413)
Q Consensus 108 ~~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~-~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 186 (413)
..+..|++++.++|..++.+...+.+.+|++++|+ +|++++|.|+.+..+......+...++....|..++.+.++|.+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~ 287 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRK 287 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 35677999999999999999999999999999999 69999999998888888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHH
Q 015121 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (413)
Q Consensus 187 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 266 (413)
+.++...+.+.+...+++|..+++.++++++..++++++ +..+...+++++++.++..+.......+++.|+.+..
T Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~----~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~ 363 (480)
T COG2244 288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK----YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLL 363 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhh
Confidence 999999999999999999999999999999999998743 3337888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 015121 267 LKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMM 310 (413)
Q Consensus 267 ~~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~ 310 (413)
++...++.++|++++++++ +.+|+.|+++++ .+ .......
T Consensus 364 ~~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~-~~~~~~~ 403 (480)
T COG2244 364 LLISLISALLNLILNLLLI--PRFGLIGAAIAT-AS-VIALALL 403 (480)
T ss_pred HHHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HH-HHHHHHH
Confidence 9999999999999999999 788999999999 55 3333333
No 29
>PRK10459 colanic acid exporter; Provisional
Probab=99.64 E-value=2.1e-13 Score=138.20 Aligned_cols=265 Identities=9% Similarity=0.008 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCHHHHHH
Q 015121 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQH 190 (413)
Q Consensus 113 k~i~~~~~P~~l~~~~~~~~~~id~~~ig~-~g~~~la~~~~~~~i~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~ 190 (413)
++..+-+....++++...+.+++...++.| +|+++.|.++.+..+.++...+. .|++.+.. |. .++++ +
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~-~~~~~----~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR-QDISH----L 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc-ccCCH----H
Confidence 567788888999999999999999999999 79999999999999888877665 56766542 21 11222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHHHH
Q 015121 191 QISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKAL 270 (413)
Q Consensus 191 ~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 270 (413)
.......+.++.++++.++.+++++++..+++. ++ ...++++..+..++..+.......++...+.+......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~ 148 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHN---PE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIE 148 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---hh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence 345556667777777777777778877766532 23 24567788888888888889999999999999988888
Q ss_pred HHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCChHHHHHHHHHhHHHHHHHHHHH
Q 015121 271 VVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKV 350 (413)
Q Consensus 271 ~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~ 350 (413)
++..++..++.++++ ..++|+.+.+++..++..+..++.....++ +++ +..+.+++.+|++++++.|.....+..+
T Consensus 149 ~~~~i~~~~~~i~~~-~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~--~~~~~~~~~~k~ll~~~~~~~~~~~~~~ 224 (492)
T PRK10459 149 ISAVVAGFTFAVVSA-FFWPGALAAILGYLVNSSVRTLLFGYFGRK-IYR--PALHFSLASVKPNLSFGAWQTAERIINY 224 (492)
T ss_pred HHHHHHHHHHHHHHH-HHCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCC--ccceecHHHHHHHHhhhHHHHHHHHHHH
Confidence 888777776665555 357899999999999998877655433332 222 1123456789999999999999999999
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhhh
Q 015121 351 AFFTLLTYFATSM-GTITLAAHQVMIQTLMMC-TVWGEPLAQTAQSFMP 397 (413)
Q Consensus 351 ~~~~v~~~~~~~l-g~~~laa~~i~~~l~~l~-~~~~~~l~~a~~~~vg 397 (413)
....+++.+++.+ |+++++.|+.+.++.++. ..+...++....|.++
T Consensus 225 ~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s 273 (492)
T PRK10459 225 LNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFA 273 (492)
T ss_pred HHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999998876 999999999999998876 4555567888889998
No 30
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.53 E-value=5.2e-12 Score=127.57 Aligned_cols=271 Identities=13% Similarity=0.066 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCHHHHH
Q 015121 112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQ 189 (413)
Q Consensus 112 ~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~-~g~~~la~~~~~~~i~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~ 189 (413)
.+++.|.+....++++...+.+++....+.| +|+++.|.++.+..+..++..+. .|+..+....+++...++++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~ 84 (480)
T COG2244 5 KKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLI 84 (480)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHH
Confidence 3778899999999999999999999999999 79999999999999999998777 789999999999887666655555
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHH
Q 015121 190 HQ-ISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLK 268 (413)
Q Consensus 190 ~~-~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 268 (413)
.. ....+......+++.........+. .+.....+++..++.+........++++|+.++.+....
T Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (480)
T COG2244 85 LLSVLLLLLLALILLLLLLLIAYLLAPI-------------DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLAL 151 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc-------------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 54 4444444444444443333222111 122345677888999999999999999999999999988
Q ss_pred HHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhh-cccccccccCCChHHHHHHHHHhHHHHHHHH
Q 015121 269 ALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQ-KGYNAFAISIPLPSELLAIFELAAPVFVMMM 347 (413)
Q Consensus 269 ~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k-~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~ 347 (413)
..+.. ..-+.....+. .....+..++..++..........+..+ +++......+..++.++++++.++|..+...
T Consensus 152 ~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~ 227 (480)
T COG2244 152 SIVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRFSLALLKELLRFGLPLLLSSL 227 (480)
T ss_pred HHHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHhhHHHHHHH
Confidence 84444 11111111211 1344556666666666665555555532 2222222222348999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Q 015121 348 SKVAFFTLLTYFATSM-GTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEF 399 (413)
Q Consensus 348 ~~~~~~~v~~~~~~~l-g~~~laa~~i~~~l~~l~~~~~~~l~~a~~~~vg~~ 399 (413)
..++...+|+.+++.+ |.++++.|+.+.++..+...+..+++.+.-|.+++.
T Consensus 228 ~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~ 280 (480)
T COG2244 228 LNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRA 280 (480)
T ss_pred HHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877 999999999999999999999999999999999944
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.53 E-value=9e-11 Score=107.72 Aligned_cols=243 Identities=12% Similarity=0.047 Sum_probs=178.1
Q ss_pred HHHHHHHHhcC-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015121 132 MSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIF 209 (413)
Q Consensus 132 ~~~id~~~ig~-~g~~~la~~~~~~~i~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 209 (413)
.+++-..++.| +|+++.|.++....+..+...+. .|+...... ..++|+++.++..+..+....+.+++..++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888 79999999999988887776654 445444333 234667777777766665555555444443
Q ss_pred HHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhHHHHHhhhc
Q 015121 210 TKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLG 289 (413)
Q Consensus 210 ~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~i~~i~l~~~li~~~~ 289 (413)
.. .+..++ + +++ ...++.+..+..++..+....+.++++.++.+......++..++..++..++. ..+
T Consensus 78 ~~----~~~~~~-~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 145 (251)
T PF13440_consen 78 AI----LIAYFF-G--DPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLL-YLG 145 (251)
T ss_pred HH----HHHHHh-C--Chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 22 222233 2 211 23456677778888999999999999999999999999998888754444444 344
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-cCHHHH
Q 015121 290 YGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATS-MGTITL 368 (413)
Q Consensus 290 ~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~l 368 (413)
.++.+..++..++.++..++.....+++. +. +++.+..+ .++.+.|..+..+..+....++.++++. +|.+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~ 219 (251)
T PF13440_consen 146 LNLWSILLAFIISALLALLISFYLLRRKL--RL---SFKFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAV 219 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccc--CC---CchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 48889999998988887776666443221 11 11333334 7999999999999999999999999998 799999
Q ss_pred HHHHHHHHHHHHHH-HhHHHHHHHHHHhhh
Q 015121 369 AAHQVMIQTLMMCT-VWGEPLAQTAQSFMP 397 (413)
Q Consensus 369 aa~~i~~~l~~l~~-~~~~~l~~a~~~~vg 397 (413)
+.|+++.++..... .+..++++...|.++
T Consensus 220 g~y~~a~~l~~~~~~~~~~~i~~~~~p~la 249 (251)
T PF13440_consen 220 GIYSVAQRLASLPASLLSSAISSVFFPKLA 249 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888 999999999999887
No 32
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.34 E-value=3.9e-11 Score=115.61 Aligned_cols=131 Identities=21% Similarity=0.198 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Q 015121 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (413)
Q Consensus 108 ~~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 187 (413)
.++..|++++.++|.++.++...+...+|+.+++++|++++++++.+.++.++...+..+++.+..+.+++++|++|+++
T Consensus 211 ~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 290 (342)
T TIGR00797 211 DWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKR 290 (342)
T ss_pred CHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 34677999999999999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHH
Q 015121 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIR 240 (413)
Q Consensus 188 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~ 240 (413)
+++..++++.+.++++++++++++++++++..+|.. |+++.+.+..++++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~--~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 291 AKEVARVALKLSLLLGLVLAIILILFREFIARLFTN--DPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999954 889999999888764
No 33
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.03 E-value=4.9e-10 Score=111.62 Aligned_cols=209 Identities=14% Similarity=0.028 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC--hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHH
Q 015121 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGS--SLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186 (413)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g--~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 186 (413)
.+.+++++++++|..+..+++..+..+-.+..|.++ ..++++.++...+....+.+..+++.++++.++..+|+++.+
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~ 322 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK 322 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence 566789999999999999999999999999999987 478888899888888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHH
Q 015121 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (413)
Q Consensus 187 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 266 (413)
.++......+...+.+++..+..+....+.+..+|. .|+|+.+...+..+++++.........+..+..+|.|..+..
T Consensus 323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift--~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~g 400 (473)
T KOG1347|consen 323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFT--NSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIG 400 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccce
Confidence 999999999999999999999999999999999994 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 015121 267 LKALVVAS-AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGY 319 (413)
Q Consensus 267 ~~~~~i~~-i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~ 319 (413)
.++++... ++.+++..++-+..++|+.|.+++...+..+....+.....+..|
T Consensus 401 a~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW 454 (473)
T KOG1347|consen 401 AVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDW 454 (473)
T ss_pred EEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccH
Confidence 98887754 556677677777788999999999999966666666666555433
No 34
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.90 E-value=3.2e-07 Score=76.95 Aligned_cols=110 Identities=21% Similarity=0.119 Sum_probs=87.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 015121 237 VQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQ 316 (413)
Q Consensus 237 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k 316 (413)
+++++++.++..+.......+++.||++..++..+++.++|++++++++ +.+|..|+++|+.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999997 88999999999999999999998888887
Q ss_pred cccccccccCCChHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015121 317 KGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFFTL 355 (413)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~v 355 (413)
+-. .+.+..+.+.+.-+....+...-.+....
T Consensus 80 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (146)
T PF14667_consen 80 KIG-------IKINWRRSLIKPILASIVMAIVLYILNSL 111 (146)
T ss_pred HhC-------CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 632 11223334455555444444444444333
No 35
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.82 E-value=1.3e-05 Score=73.73 Aligned_cols=256 Identities=12% Similarity=0.062 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC---hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Q 015121 111 QIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGS---SLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (413)
Q Consensus 111 ~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g---~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 187 (413)
.+..++++-+|..++.+...+..-+-+.-+++-. .+.+|+|+++..+.-++..+...+-.....++ ++++++
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V-----~s~rsr 83 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFV-----NSKRSR 83 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHh-----cchhhh
Confidence 3468999999999999999988888777787632 34599999999998888877766665544444 333332
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHH
Q 015121 188 VQHQISVLLFVGLACGFS-MLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (413)
Q Consensus 188 ~~~~~~~~l~~~~~~~i~-~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 266 (413)
.+..... ...+.+.... ..+.+--++.+++.-+.+ -++++.+.+...+.++.+--++.++....++++.=++++...
T Consensus 84 r~~vl~~-~vag~v~avi~~LIa~TpLG~~li~~lhg-Vs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 84 RKAVLCM-AVAGAVAAVIHLLIAWTPLGNYLINDLHG-VSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 2222211 1122222112 112222244555433332 378999999999999999999999999999998877777777
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh-------ccchHHHHHHHHHHHHHHHH-HHHHHH---hhcccccccccCCChHHHHHH
Q 015121 267 LKALVVASAVNGIGDIVLCRFL-------GYGIAGAAWATMASQVIAAY-MMIINL---NQKGYNAFAISIPLPSELLAI 335 (413)
Q Consensus 267 ~~~~~i~~i~~i~l~~~li~~~-------~~Gi~Gaa~a~~is~~i~~~-~~~~~~---~k~~~~~~~~~~~~~~~~~~~ 335 (413)
...++...+..+++..+++... -.|+.|. ..+..+.+. +.+.|+ ..+........+.+-..++++
T Consensus 162 ~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~----y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~ 237 (345)
T PF07260_consen 162 GSASIADVIAQVVLVAILLSMHLEPQDPLLIPILAL----YAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRM 237 (345)
T ss_pred ehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHH
Confidence 7766666665555544454211 1222222 222222221 112222 222222223335566789999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhc--CH----HHHHHHHHHHHH
Q 015121 336 FELAAPVFVMMMSKVAFFTLLTYFATSM--GT----ITLAAHQVMIQT 377 (413)
Q Consensus 336 l~~~~p~~~~~~~~~~~~~v~~~~~~~l--g~----~~laa~~i~~~l 377 (413)
+++.+|.+......++.--+.+.++++. |+ +++|+-++.+-+
T Consensus 238 l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypv 285 (345)
T PF07260_consen 238 LKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPV 285 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCC
Confidence 9999999999999999999999999994 33 455554444333
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.60 E-value=1.3e-05 Score=81.46 Aligned_cols=202 Identities=14% Similarity=0.100 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--c-ChhhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCH---
Q 015121 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ--G-SSLELAALGPGTVLCDNMS-YIFMFLSIATSNLVATSLTNRDK--- 185 (413)
Q Consensus 113 k~i~~~~~P~~l~~~~~~~~~~id~~~ig~--~-g~~~la~~~~~~~i~~~~~-~~~~gl~~~~~~~~s~~~g~~~~--- 185 (413)
+++++++...+.++++-.+..--|.+++.. + ..++.|.|+++++.-.++. .++..+--..-...++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 789999999999999999999999999999 5 6788999999999888774 44467888888888887755422
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 015121 186 ------NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLG 259 (413)
Q Consensus 186 ------~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~ 259 (413)
++..+.+...+.+...+|+++..+....++.++.+++|++ =....+...+++.+..+|+.+++.+.-+++++
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~--w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s 410 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSR--WSSTSAPSLLRAYCYYIPFLAINGITEAFVFS 410 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhc--ccCCCchHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 4577788888999999999988888889999999987742 11233577899999999999999999999999
Q ss_pred CCCChHHHHHH---HHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015121 260 MKDSWGPLKAL---VVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (413)
Q Consensus 260 ~g~~~~~~~~~---~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~ 317 (413)
....+.....+ .+..++.+..+++|+.+ ++|..|..+|+++...+..+....++++.
T Consensus 411 ~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 411 VASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88766665544 44556677788888866 89999999999999999999998888664
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=0.0003 Score=67.74 Aligned_cols=200 Identities=16% Similarity=0.139 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---ChhhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCHH--
Q 015121 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQG---SSLELAALGPGTVLCDNMS-YIFMFLSIATSNLVATSLTNRDKN-- 186 (413)
Q Consensus 113 k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~---g~~~la~~~~~~~i~~~~~-~~~~gl~~~~~~~~s~~~g~~~~~-- 186 (413)
+++.+...-..-+.++-.+..--|.+++... +-++.|.|.+.++.-.+.. .++..+--......+|...+++.|
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 6678888888899999999999999999963 4445666766666555553 344567777777888877665554
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChH
Q 015121 187 -EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWG 265 (413)
Q Consensus 187 -~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 265 (413)
++..++...+.+...+|+++..+....++.++.+++|++ =....+...+++.+.++|+.+++.+.-+++.+.+..+.
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~k--wss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSK--WSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCcc--ccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 455567777888888888888888778888899888743 11223457899999999999999999999999887666
Q ss_pred HHH---HHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 015121 266 PLK---ALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQ 316 (413)
Q Consensus 266 ~~~---~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k 316 (413)
... ..++..+..++++|+++-+ +|..|..+|.++...+.-+....++++
T Consensus 397 i~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 397 IDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 3455677888999999944 577999999999888877777666654
No 38
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=97.80 E-value=1.2e-05 Score=68.32 Aligned_cols=70 Identities=20% Similarity=0.182 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhccCCCchhccC
Q 015121 341 PVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGC 412 (413)
Q Consensus 341 p~~~~~~~~~~~~~v~~~~~~~lg~~~laa~~i~~~l~~l~~~~~~~l~~a~~~~vg~~~~Ga~~~~~~~r~ 412 (413)
|.+++.+.+.+.+.++..+++++|+++++++++..++..+...+..|++.+.++++| +++|++| .+++|+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s-~~~G~~~-~~~~~~ 70 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILIS-QNIGAGD-YKRAKK 70 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCSSS-TTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceee-ccccccc-cccccc
Confidence 889999999999999999999999999999999999999999999999999999999 7788775 677765
No 39
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.17 E-value=0.003 Score=58.16 Aligned_cols=71 Identities=20% Similarity=0.150 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015121 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATS 179 (413)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~-~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~ 179 (413)
+++.|++++.+.|..++.+...+...+|++++++ .|++++|.|+.+.++......+...+.+...|.+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777999999999999999999999999999999 5999999999999999999999988999999999886
No 40
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=95.73 E-value=0.074 Score=48.24 Aligned_cols=65 Identities=17% Similarity=0.086 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cChhhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHH
Q 015121 114 EIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMS-YIFMFLSIATSNLVAT 178 (413)
Q Consensus 114 ~i~~~~~P~~l~~~~~~~~~~id~~~ig~-~g~~~la~~~~~~~i~~~~~-~~~~gl~~~~~~~~s~ 178 (413)
+.++.+.|..++.++......+|.++++. +|++++|.|+.+.++..... .+..+++....|..+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47999999999999999999999999999 89999999999999999887 7778899999888876
No 41
>COG4267 Predicted membrane protein [Function unknown]
Probab=95.29 E-value=2.9 Score=40.10 Aligned_cols=133 Identities=7% Similarity=0.041 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHH
Q 015121 166 MFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWP 245 (413)
Q Consensus 166 ~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~ 245 (413)
.|+....+..+|...-+||.+++..-+.-...+....+..++.+.+ ..++ +. ...|=...+....
T Consensus 78 gg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf--------~~~~--~~-----si~yk~l~~~~FV 142 (467)
T COG4267 78 GGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF--------FVNN--QY-----SIVYKILACALFV 142 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh--------hhcC--ch-----hHHHHHHHHHHHH
Confidence 5677777777887777788877776665555555555544443211 1111 11 1122223444555
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 015121 246 AVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQ 316 (413)
Q Consensus 246 ~~~~~~~~~~~l~~~g~~~~~~~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k 316 (413)
.....+....++.+.++.+...+.-.++.++.+.+..++- .+++.|.-++..++..+...+...++.+
T Consensus 143 ~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 143 GMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6677778888999999999999999999999888877765 5699999999999999888888777754
No 42
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=94.80 E-value=1.9 Score=44.30 Aligned_cols=66 Identities=6% Similarity=0.024 Sum_probs=53.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--c-CHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHhhh
Q 015121 332 LLAIFELAAPVFVMMMSKVAFFTLLTYFATS--M-GTITLAAHQVMIQTLMMCT-VWGEPLAQTAQSFMP 397 (413)
Q Consensus 332 ~~~~l~~~~p~~~~~~~~~~~~~v~~~~~~~--l-g~~~laa~~i~~~l~~l~~-~~~~~l~~a~~~~vg 397 (413)
-++.+++.......++...+..|-+.++++. + ..++-+.|++++|+-++.. .+..++-.+.-.+.+
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fs 321 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFS 321 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHH
Confidence 3688999999999999999999999988888 5 6789999999999888773 333456666666666
No 43
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.31 E-value=13 Score=36.87 Aligned_cols=285 Identities=12% Similarity=-0.048 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---HHHHHH
Q 015121 115 IMKFTGPATGLWICGPLMSLI-DTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRD---KNEVQH 190 (413)
Q Consensus 115 i~~~~~P~~l~~~~~~~~~~i-d~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~---~~~~~~ 190 (413)
..+.+.-.+..+++..+..+. +.+.+-+++++.+|..++=..+..-.. ..++-=.........|..+ .++..+
T Consensus 10 s~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTi---LFlsREair~A~l~~gs~~~d~~te~~n 86 (530)
T KOG2864|consen 10 SFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTI---LFLSREAIRLAELRIGSEPADTWTEFIN 86 (530)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHH---HHhhHHHHHHHhccCCCCCCccHHHHHH
Confidence 344455556666666666655 555555589998887765544433222 2223222223333333333 345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccc-hHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHHH
Q 015121 191 QISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVH-ILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKA 269 (413)
Q Consensus 191 ~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~-~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 269 (413)
..+.+..+..+..++...+++. +.... |+. ..+.-..-+.+..++...-.+...+.-..|..-+.+.-...
T Consensus 87 ~~wlS~~L~~~i~~~~i~~wl~----~~~s~----d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~ 158 (530)
T KOG2864|consen 87 LLWLSVPLQTAINVACIYFWLG----FLSSS----DEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA 158 (530)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH----Hhhcc----chhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 5555555555555444443322 22211 111 11111111222222222222222222333333333344444
Q ss_pred HHHHHHHH-HHhHHHHHhhh-ccchHHHHHHHHHHHHHHHHH-HHHHHhhcccc-------c----cccc--CC-ChHHH
Q 015121 270 LVVASAVN-GIGDIVLCRFL-GYGIAGAAWATMASQVIAAYM-MIINLNQKGYN-------A----FAIS--IP-LPSEL 332 (413)
Q Consensus 270 ~~i~~i~~-i~l~~~li~~~-~~Gi~Gaa~a~~is~~i~~~~-~~~~~~k~~~~-------~----~~~~--~~-~~~~~ 332 (413)
.-+..++. ++.-.+++.++ .+++.--|+|.....+..++. ...|++.++.. + .+.. ++ ...-=
T Consensus 159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd 238 (530)
T KOG2864|consen 159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD 238 (530)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence 44444444 22222233223 344444555544444333332 22233333300 0 0000 10 01112
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHhhhhhhhccCCCch
Q 015121 333 LAIFELAAPVFVMMMSKVAFFTLLTYFATSM---GTITLAAHQVMIQTLMMCT-VWGEPLAQTAQSFMPEFLYGMNRNLA 408 (413)
Q Consensus 333 ~~~l~~~~p~~~~~~~~~~~~~v~~~~~~~l---g~~~laa~~i~~~l~~l~~-~~~~~l~~a~~~~vg~~~~Ga~~~~~ 408 (413)
++.++...-.....+...+..+=+.++++.. .-.+-|.|.++.|.-++.. ++..++-...-...++ .+ .+++.|
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~-~l-s~~~qe 316 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFAR-LL-SRDNQE 316 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHH-Hh-hccchh
Confidence 3556666667777788888888777666643 4456778888877766552 3334555555555552 22 334445
Q ss_pred hccC
Q 015121 409 KHGC 412 (413)
Q Consensus 409 ~~r~ 412 (413)
+.|+
T Consensus 317 ~~k~ 320 (530)
T KOG2864|consen 317 NVKK 320 (530)
T ss_pred hHHH
Confidence 5443
No 44
>COG4267 Predicted membrane protein [Function unknown]
Probab=91.29 E-value=9.6 Score=36.71 Aligned_cols=119 Identities=11% Similarity=-0.055 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCCh
Q 015121 185 KNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSW 264 (413)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 264 (413)
.++.....++.+.-..-+-...++.+++.++.++.+++- .+.-.+..++-.++..........-.+.--..+-+
T Consensus 319 ~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~l------S~~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~ 392 (467)
T COG4267 319 LKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGL------SEYYLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRR 392 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445566666666666677777888899999999955 34445566666666666655555555555566667
Q ss_pred HHHHHHHHHHHHHHHhHHHHHh-hhccchHHHHHHHHHHHHHHHHH
Q 015121 265 GPLKALVVASAVNGIGDIVLCR-FLGYGIAGAAWATMASQVIAAYM 309 (413)
Q Consensus 265 ~~~~~~~i~~i~~i~l~~~li~-~~~~Gi~Gaa~a~~is~~i~~~~ 309 (413)
..+.....-.+.|.++.+++.. ++++--.|..+|..++..+....
T Consensus 393 i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~~~~ 438 (467)
T COG4267 393 IALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLVAFKS 438 (467)
T ss_pred hhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHHHHhh
Confidence 7777777788889998888773 34444456666655555444443
No 45
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=60.34 E-value=2e+02 Score=29.21 Aligned_cols=52 Identities=19% Similarity=0.027 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015121 262 DSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (413)
Q Consensus 262 ~~~~~~~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~ 317 (413)
++....+...+..+.|++....+. +-....|. ...+-..+..++...|++++
T Consensus 402 R~aa~s~~~~~~w~~~fiv~~~fp--~l~~~~g~--~~filF~i~~~~~~i~~~~~ 453 (485)
T KOG0569|consen 402 RSAAQSVATAVNWLSNFIVGFAFP--PLQNVIGP--YVFILFVIPLAIFLIYLYRY 453 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc--hhhHHHHHHHHHHHHHHHHh
Confidence 344445555666677777665555 33455554 22222333333444444443
No 46
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=56.76 E-value=64 Score=30.61 Aligned_cols=71 Identities=8% Similarity=0.051 Sum_probs=60.5
Q ss_pred CChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 015121 327 PLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSM---GTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMP 397 (413)
Q Consensus 327 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~v~~~~~~~l---g~~~laa~~i~~~l~~l~~~~~~~l~~a~~~~vg 397 (413)
+.....+++++.-+|.+++.....+.-.+.+.-+++- ..+.+|+|+++..+.-++..+...+-.....++.
T Consensus 5 ~~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~ 78 (345)
T PF07260_consen 5 PSLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVN 78 (345)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhc
Confidence 4456788999999999999999999998888777663 3456999999999999999999999988888875
No 47
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=54.98 E-value=2.1e+02 Score=27.92 Aligned_cols=38 Identities=8% Similarity=0.109 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 015121 184 DKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAF 221 (413)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~ 221 (413)
+.++.+++.+++...+.+......++.....-|+...-
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~ 126 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQV 126 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999998888877777777643
No 48
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=48.95 E-value=89 Score=23.06 Aligned_cols=38 Identities=11% Similarity=-0.007 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Q 015121 168 LSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFS 205 (413)
Q Consensus 168 l~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~i~ 205 (413)
++...+..+-..+.+||++++++.-+++..++.+-.++
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 44445556777888999999999888887766544333
No 49
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=41.97 E-value=4.8e+02 Score=28.18 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 015121 164 IFMFLSIATSNLVATSLTNR 183 (413)
Q Consensus 164 ~~~gl~~~~~~~~s~~~g~~ 183 (413)
+...++.-....++..+|++
T Consensus 213 lG~iiG~li~G~LsDR~GRR 232 (742)
T TIGR01299 213 LGMMVGAFFWGGLADKLGRK 232 (742)
T ss_pred HHHHHHHHHHHHHHHHhCcH
Confidence 33445555555666666655
No 50
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=40.27 E-value=2.9e+02 Score=25.09 Aligned_cols=140 Identities=10% Similarity=-0.044 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhhc--cCH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HhcCCCccchHHH-HHHH
Q 015121 167 FLSIATSNLVATSLTN--RDK-NEVQH-QISVLLFVGLACGFSMLIFTKFFGMQALS-----AFTGSKNVHILPA-ANKY 236 (413)
Q Consensus 167 gl~~~~~~~~s~~~g~--~~~-~~~~~-~~~~~l~~~~~~~i~~~~~~~~~~~~i~~-----~~~~~~~~~~~~~-a~~~ 236 (413)
.+..+...-..+.++. ++. +-.++ ...-.+.+...+.+.+......+.+.+.. .++. +.+..+. ....
T Consensus 86 ~~~~~l~~a~~~i~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 163 (260)
T PF03631_consen 86 SFFASLQRALNRIYGVPPRERRSFWKRRLIALLFLIILGVLLILSLALSVFLPSVLQFIILPFLGL--LSEISTWFLWNL 163 (260)
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc--hhhhhHHHHHHH
Confidence 3444455566666666 332 12222 22222223333333333334444444433 2222 2222222 3455
Q ss_pred HHHHHhh-HHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhHHHHHhh--------hccchHHHHHHHHHHHHHHH
Q 015121 237 VQIRGLA-WPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRF--------LGYGIAGAAWATMASQVIAA 307 (413)
Q Consensus 237 l~i~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~i~~i~l~~~li~~--------~~~Gi~Gaa~a~~is~~i~~ 307 (413)
.++.... +....+..++.-.-+..-+.+.....+++..+.-.++.+.+..+ .-+|..|..+...+--.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~y~~~p~~~~~~~~~~~Ga~~~~~~~~~~~~~f~~y~~~~~~~~~~YG~l~~li~~Llwly~~~ 243 (260)
T PF03631_consen 164 IRWLVSFLLLFLLFFLLYRFLPNRRVRWRAALPGALFAAVLWFLLSYGFSLYLSYVSSYSSVYGSLGSLIILLLWLYFSA 243 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHH
Confidence 5553332 23333444444444444455555555555554444444444322 12565555555544444443
Q ss_pred H
Q 015121 308 Y 308 (413)
Q Consensus 308 ~ 308 (413)
.
T Consensus 244 ~ 244 (260)
T PF03631_consen 244 L 244 (260)
T ss_pred H
Confidence 3
No 51
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=34.06 E-value=4.8e+02 Score=25.87 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=18.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015121 183 RDKNEVQHQISVLLFVGLACGFSMLIFTKF 212 (413)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~ 212 (413)
+..++.++..+.+...+.++....+...++
T Consensus 223 ~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL 252 (411)
T KOG1305|consen 223 RSVKKIQRVSNIAIILATLIYLLTGLFGYL 252 (411)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334456777777777776666666665543
No 52
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=33.61 E-value=4.2e+02 Score=25.66 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=51.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Q 015121 289 GYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITL 368 (413)
Q Consensus 289 ~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~l 368 (413)
+-|+.+..++..++......+.++-++.++ ++.+..-+....+.+.+|...-..+..... +..+++
T Consensus 174 g~g~ip~~~~~~~~~v~~~~~v~~~~r~R~-~r~~~gl~~~p~~~~~~k~~~~~~~il~~v--------~~ln~y----- 239 (394)
T COG4214 174 GQGFLPAILGWILGLVALAAIVFAGLRGRR-RRIRHGLEVPPFWAFVLKLLVIAAIILGLV--------YVLNSY----- 239 (394)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCchHHHHHHHHHHHHHHHHHH--------HHHhhc-----
Confidence 356666777777775555444444444332 222222222333444555444333322222 222223
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhccCCCchhccC
Q 015121 369 AAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGC 412 (413)
Q Consensus 369 aa~~i~~~l~~l~~~~~~~l~~a~~~~vg~~~~Ga~~~~~~~r~ 412 (413)
+++..-+..+........-.+..+..|++-|.-+.|+|.+|.
T Consensus 240 --rGvp~~vlv~~vl~~~~~fvt~rT~fGR~VyAiGGN~eAA~L 281 (394)
T COG4214 240 --RGVPNPVLVLLVLLIVFTFVTTRTVFGRRVYAIGGNPEAARL 281 (394)
T ss_pred --cCCcHHHHHHHHHHHHHHHHhhhceeeeEEEEecCCHHHHHh
Confidence 233333333333333333445677788777766777777764
No 53
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.89 E-value=85 Score=25.21 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015121 292 IAGAAWATMASQVIAAYMMIINLNQK 317 (413)
Q Consensus 292 i~Gaa~a~~is~~i~~~~~~~~~~k~ 317 (413)
+.|..++.+++.+...+++.++++|+
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333344443
No 54
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=30.37 E-value=2.8e+02 Score=24.82 Aligned_cols=39 Identities=8% Similarity=-0.041 Sum_probs=22.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Q 015121 183 RDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT 222 (413)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~ 222 (413)
.+++.....+..++...+++-+++++++ .++.++..+|+
T Consensus 141 E~y~k~~k~~~~gi~aml~Vf~LF~lvm-t~g~d~m~fl~ 179 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAMLFVFMLFALVM-TIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-Hhcccchhhhh
Confidence 3455566666666665555555555555 35555555553
No 55
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=30.29 E-value=3.5e+02 Score=23.08 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=63.3
Q ss_pred HHHHHHhhccCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHH
Q 015121 174 NLVATSLTNRDKNEVQH--QISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGW 251 (413)
Q Consensus 174 ~~~s~~~g~~~~~~~~~--~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~ 251 (413)
..++|.+|.+.+-.++. =.+....+..+....+++....|++.+....+....+ ...+.+...|....++..
T Consensus 33 SKISQlLGne~k~~vr~P~GLr~Wq~~sa~~f~~~~~m~L~FP~~~~~~vf~~~~~------~s~~~vRlyGgAL~s~aL 106 (179)
T PF14936_consen 33 SKISQLLGNEIKFAVREPRGLRLWQFLSAVYFTLVALMALVFPDQLYDHVFEEEPV------TSKLPVRLYGGALLSIAL 106 (179)
T ss_pred HHHHHHhcccceeeecCCCchhHHHHHHHHHHHHHHHHHHHccHHHHHhhcccccc------cceeeehhhhHHHHHHHH
Confidence 46778777554322211 1122222333444445566667888888777542211 222444455555556666
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHHHHhHHHH--Hhhhccch-HHHHHHHHHHHHHHHHHHHHHHhhc
Q 015121 252 VAQSASLGMKDSWGPLKALVVASAVNGIGDIVL--CRFLGYGI-AGAAWATMASQVIAAYMMIINLNQK 317 (413)
Q Consensus 252 ~~~~~l~~~g~~~~~~~~~~i~~i~~i~l~~~l--i~~~~~Gi-~Gaa~a~~is~~i~~~~~~~~~~k~ 317 (413)
.+.+.++... |....-.++...+...+..+. +.....|. .+.+.-..++..+..++.++|.+.-
T Consensus 107 i~w~~l~t~e--k~iIrwtLL~ea~y~~vq~~vtt~t~~e~~~~s~~~~llLisr~lf~liS~yyYy~~ 173 (179)
T PF14936_consen 107 IFWNALYTAE--KAIIRWTLLSEACYFGVQFLVTTATLAEMGWLSNAALLLLISRLLFALISMYYYYQL 173 (179)
T ss_pred HHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666655 222222222222212211111 11112222 2344555666777666666665543
No 56
>PRK03612 spermidine synthase; Provisional
Probab=26.15 E-value=7.2e+02 Score=25.45 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-cChh
Q 015121 119 TGPATGLWICGPLMSLIDTAVIGQ-GSSL 146 (413)
Q Consensus 119 ~~P~~l~~~~~~~~~~id~~~ig~-~g~~ 146 (413)
-.-.+++.++..++.++..-+++. +|..
T Consensus 20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s 48 (521)
T PRK03612 20 LAAVFVCAACGLVYELLLGTLASYLLGDS 48 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 344556677777777777777666 3543
No 57
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=26.02 E-value=5.7e+02 Score=24.23 Aligned_cols=30 Identities=17% Similarity=0.095 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCHHHHHHHH
Q 015121 163 YIFMFLSIATSNLVATSLTNRDKNEVQHQI 192 (413)
Q Consensus 163 ~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 192 (413)
.+..++|....|-.-...|-+|..-.+.-+
T Consensus 12 i~g~~lG~~~~p~ll~~~~~~~~~~~~n~~ 41 (356)
T COG4956 12 IIGAVLGFAVIPELLADLGIQDTAFLNNEY 41 (356)
T ss_pred HHHhhhhHhhHHHHHhhcCcccchhhccHH
Confidence 334556666666666666665554444333
No 58
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=25.85 E-value=4.3e+02 Score=22.76 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhh
Q 015121 291 GIAGAAWATMASQVIAAYMMIINLNQ 316 (413)
Q Consensus 291 Gi~Gaa~a~~is~~i~~~~~~~~~~k 316 (413)
++.|...+..++.++.++++..|..+
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~n 160 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFN 160 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheee
Confidence 34477778888888888888777754
No 59
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.73 E-value=8.4e+02 Score=25.73 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 015121 192 ISVLLFVGLACGFSMLIFTKFFGMQA 217 (413)
Q Consensus 192 ~~~~l~~~~~~~i~~~~~~~~~~~~i 217 (413)
.++...+.+.+|+...+..+++++++
T Consensus 389 ~~~~~~il~~~gi~sii~G~lyG~fF 414 (646)
T PRK05771 389 LKRLLKILIYLGISTIIWGLLTGSFF 414 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 44445555566666555555555554
No 60
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=23.76 E-value=2.1e+02 Score=26.88 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhccc
Q 015121 304 VIAAYMMIINLNQKGY 319 (413)
Q Consensus 304 ~i~~~~~~~~~~k~~~ 319 (413)
++..++.+++++||+|
T Consensus 302 ~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 302 AVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3444556677777765
No 61
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=23.20 E-value=4.4e+02 Score=21.89 Aligned_cols=27 Identities=26% Similarity=0.564 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015121 185 KNEVQHQISVLLFVGLACGFSMLIFTK 211 (413)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~i~~~~~~~ 211 (413)
.++-++..++...+++.+++++.....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 10 PEEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777777666654
No 62
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=21.43 E-value=6.6e+02 Score=23.29 Aligned_cols=25 Identities=20% Similarity=-0.003 Sum_probs=17.3
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHH
Q 015121 288 LGYGIAGAAWATMASQVIAAYMMII 312 (413)
Q Consensus 288 ~~~Gi~Gaa~a~~is~~i~~~~~~~ 312 (413)
......|.+.|..++|.-..+--+.
T Consensus 214 is~~~~G~a~af~lSQ~~vvIStlg 238 (269)
T PF06800_consen 214 ISAQKNGVATAFTLSQLGVVISTLG 238 (269)
T ss_pred HhHHhccchhhhhHHhHHHHHHHhh
Confidence 3456789999999999665544443
No 63
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=20.05 E-value=5.6e+02 Score=21.93 Aligned_cols=49 Identities=14% Similarity=-0.088 Sum_probs=28.6
Q ss_pred HHHHHHHHhhCCCCh-HHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHH
Q 015121 250 GWVAQSASLGMKDSW-GPLKALVVASAVNGIGDIVLCRF-LGYGIAGAAWA 298 (413)
Q Consensus 250 ~~~~~~~l~~~g~~~-~~~~~~~i~~i~~i~l~~~li~~-~~~Gi~Gaa~a 298 (413)
...++...++..+.+ .....-.+...++++++.+...+ +++|..|...+
T Consensus 84 ~~wyrplY~A~r~dss~~f~~ff~~~~~~i~f~i~~aIG~p~~G~~G~i~a 134 (177)
T PF04144_consen 84 FCWYRPLYKAFRTDSSFRFMWFFFFFFVHIIFCIIMAIGIPGWGSCGWITA 134 (177)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 345566666655444 44444455667777777766643 45676665444
No 64
>PTZ00370 STEVOR; Provisional
Probab=20.00 E-value=94 Score=28.85 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 015121 300 MASQVIAAYMMIINLNQKG 318 (413)
Q Consensus 300 ~is~~i~~~~~~~~~~k~~ 318 (413)
.+--.+.+++++++++|++
T Consensus 264 llil~vvliilYiwlyrrR 282 (296)
T PTZ00370 264 LLILAVVLIILYIWLYRRR 282 (296)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444555666666666653
Done!