Query 015121
Match_columns 413
No_of_seqs 265 out of 2155
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 07:04:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 7.6E-34 2.6E-38 283.0 23.1 299 109-412 8-315 (460)
2 3mkt_A Multi antimicrobial ext 99.9 1.6E-21 5.6E-26 193.7 21.5 208 109-318 234-447 (460)
3 2k1k_A Ephrin type-A receptor 43.4 34 0.0012 20.3 3.7 23 292-314 13-35 (38)
4 2jwa_A Receptor tyrosine-prote 33.1 80 0.0027 19.4 4.3 14 305-318 26-39 (44)
5 1pw4_A Glycerol-3-phosphate tr 28.7 3.4E+02 0.012 24.8 18.8 14 168-181 77-90 (451)
6 2l2t_A Receptor tyrosine-prote 27.0 1.1E+02 0.0039 18.7 4.4 7 311-317 31-37 (44)
7 2ks1_B Epidermal growth factor 25.5 1.1E+02 0.0037 18.8 4.0 10 308-317 29-38 (44)
8 1pw4_A Glycerol-3-phosphate tr 17.0 5.7E+02 0.02 23.1 17.5 23 290-312 410-432 (451)
9 4ev6_A Magnesium transport pro 12.9 1.5E+02 0.005 27.0 3.7 17 303-319 322-338 (339)
10 1nkz_B Light-harvesting protei 11.4 1.9E+02 0.0065 17.4 2.6 33 184-216 7-39 (41)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=7.6e-34 Score=282.99 Aligned_cols=299 Identities=16% Similarity=0.163 Sum_probs=272.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHH
Q 015121 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV 188 (413)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 188 (413)
+++.|++++.++|.++++++..+++.+|+.+++++|++++|+++++.++..+...+..|++.+..+.++|++|++|+++.
T Consensus 8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~ 87 (460)
T 3mkt_A 8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKI 87 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence 45669999999999999999999999999999999999999999999998888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHH
Q 015121 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLK 268 (413)
Q Consensus 189 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 268 (413)
++.+++++.+.++++++++++ ++++++++.+++. |+++.+.+..|+++++++.++..+..++.+++++.|+++.+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (460)
T 3mkt_A 88 PFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDV--EEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV 164 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSS--TTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999999998876 6788999988855 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhh----hccchHHHHHHHHHHHHHHHHHHHHHHhhccc-ccc----cccCCChHHHHHHHHHh
Q 015121 269 ALVVASAVNGIGDIVLCRF----LGYGIAGAAWATMASQVIAAYMMIINLNQKGY-NAF----AISIPLPSELLAIFELA 339 (413)
Q Consensus 269 ~~~i~~i~~i~l~~~li~~----~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~-~~~----~~~~~~~~~~~~~l~~~ 339 (413)
..+++.++|+++++++++. +++|+.|+++|+.+++++..++.+++++|++. .+. ++.+++++.+|++++++
T Consensus 165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (460)
T 3mkt_A 165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG 244 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence 9999999999999999975 37999999999999999999988888866542 221 22356788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhccCCCchhccC
Q 015121 340 APVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGC 412 (413)
Q Consensus 340 ~p~~~~~~~~~~~~~v~~~~~~~lg~~~laa~~i~~~l~~l~~~~~~~l~~a~~~~vg~~~~Ga~~~~~~~r~ 412 (413)
+|.+++.+.+++.+.+++.+++++|++++|+|+++.++.++..++..+++++..|+++ +++|++| .+++|+
T Consensus 245 ~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~-~~~g~~~-~~~~~~ 315 (460)
T 3mkt_A 245 FPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVG-HKLGEQD-TKGAAI 315 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSSC-CCTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCC-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 6788765 466654
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.88 E-value=1.6e-21 Score=193.74 Aligned_cols=208 Identities=16% Similarity=0.073 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHH
Q 015121 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV 188 (413)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 188 (413)
++.+|++++.++|.+++.+...+...+|+.+++++|++++|+++.+.++.++...+..+++++..|.+++++|++|+|++
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~ 313 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGA 313 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 34558999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHH
Q 015121 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLK 268 (413)
Q Consensus 189 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 268 (413)
++..++++.+...++++++++++++++++..+|.+ |+++.+.+..++++.+++.++..+..+..+++++.|+++.+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 391 (460)
T 3mkt_A 314 AIAANVGLMTGLATACITALLTVLFREQIALLYTE--NQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFH 391 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 99999999999999999999999999999999965 7788999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHhHHHHHhh----hc-cchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015121 269 ALVVAS-AVNGIGDIVLCRF----LG-YGIAGAAWATMASQVIAAYMMIINLNQKG 318 (413)
Q Consensus 269 ~~~i~~-i~~i~l~~~li~~----~~-~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~ 318 (413)
..++.. +++++++++++.. ++ +|+.|+++|+.+++++..++..++++|+.
T Consensus 392 ~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 392 RTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988 8999999999965 56 99999999999999999888877766543
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=43.43 E-value=34 Score=20.31 Aligned_cols=23 Identities=4% Similarity=0.185 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 015121 292 IAGAAWATMASQVIAAYMMIINL 314 (413)
Q Consensus 292 i~Gaa~a~~is~~i~~~~~~~~~ 314 (413)
+.|+.++.+++-.+...+.++++
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~ 35 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRS 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHHHHe
Confidence 45666666665555444444333
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=33.10 E-value=80 Score=19.42 Aligned_cols=14 Identities=7% Similarity=0.188 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhcc
Q 015121 305 IAAYMMIINLNQKG 318 (413)
Q Consensus 305 i~~~~~~~~~~k~~ 318 (413)
+..+....|++|++
T Consensus 26 i~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 26 VLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHhheehhh
Confidence 33344445565554
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=28.68 E-value=3.4e+02 Score=24.75 Aligned_cols=14 Identities=14% Similarity=-0.026 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHhh
Q 015121 168 LSIATSNLVATSLT 181 (413)
Q Consensus 168 l~~~~~~~~s~~~g 181 (413)
++.-.....++.+|
T Consensus 77 ~~~~~~G~l~dr~g 90 (451)
T 1pw4_A 77 FSKFIMGSVSDRSN 90 (451)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHhHHHHHHhcC
Confidence 33333334444444
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=26.97 E-value=1.1e+02 Score=18.73 Aligned_cols=7 Identities=14% Similarity=0.368 Sum_probs=2.9
Q ss_pred HHHHhhc
Q 015121 311 IINLNQK 317 (413)
Q Consensus 311 ~~~~~k~ 317 (413)
++|++++
T Consensus 31 ~~~~RRR 37 (44)
T 2l2t_A 31 AVYVRRK 37 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3444443
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=25.50 E-value=1.1e+02 Score=18.80 Aligned_cols=10 Identities=0% Similarity=0.052 Sum_probs=4.3
Q ss_pred HHHHHHHhhc
Q 015121 308 YMMIINLNQK 317 (413)
Q Consensus 308 ~~~~~~~~k~ 317 (413)
+..++|++++
T Consensus 29 ~~~~~~~RRr 38 (44)
T 2ks1_B 29 LGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3334444444
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=17.02 E-value=5.7e+02 Score=23.09 Aligned_cols=23 Identities=17% Similarity=0.535 Sum_probs=10.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 015121 290 YGIAGAAWATMASQVIAAYMMII 312 (413)
Q Consensus 290 ~Gi~Gaa~a~~is~~i~~~~~~~ 312 (413)
.|.....+...+..++..++.+.
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 410 FGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHH
Confidence 45555554444444444443333
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=12.89 E-value=1.5e+02 Score=27.02 Aligned_cols=17 Identities=12% Similarity=0.432 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhccc
Q 015121 303 QVIAAYMMIINLNQKGY 319 (413)
Q Consensus 303 ~~i~~~~~~~~~~k~~~ 319 (413)
.++.+++.+++++||+|
T Consensus 322 m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 322 MVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 34445556667777765
No 10
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=11.43 E-value=1.9e+02 Score=17.41 Aligned_cols=33 Identities=9% Similarity=-0.139 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 015121 184 DKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQ 216 (413)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~ 216 (413)
+-++...++.+++..-..++++.=++.+...+|
T Consensus 7 EA~EfH~~~~~~~~~F~~iA~vAH~l~w~wrPW 39 (41)
T 1nkz_B 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777888888888777777777776655444
Done!