Query 015121
Match_columns 413
No_of_seqs 265 out of 2155
Neff 9.3
Searched_HMMs 13730
Date Mon Mar 25 07:04:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015121.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015121hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 48.3 76 0.0055 26.8 18.5 27 289-315 406-432 (447)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 22.0 1.1E+02 0.0079 20.5 9.1 27 329-355 67-93 (100)
3 d1pv7a_ f.38.1.2 (A:) Lactose 19.8 2.1E+02 0.015 23.0 14.6 28 290-317 376-403 (417)
4 d1nkzb_ f.3.1.1 (B:) Light-har 13.3 81 0.0059 17.3 2.7 33 184-216 7-39 (41)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 12.1 2.1E+02 0.015 19.3 9.1 27 329-355 73-99 (107)
6 d1lghb_ f.3.1.1 (B:) Light-har 8.5 99 0.0072 17.4 2.0 31 184-214 10-40 (43)
7 d1ijdb_ f.3.1.1 (B:) Light-har 5.1 2.7E+02 0.02 15.0 3.1 29 184-212 8-36 (40)
8 d1jo5a_ f.3.1.1 (A:) Light-har 4.4 1.5E+02 0.011 17.0 1.2 32 184-215 15-46 (48)
9 d1wyha1 g.39.1.3 (A:35-66) Fou 4.2 1.5E+02 0.011 15.3 0.9 16 9-24 3-18 (32)
10 d3cx5c2 f.21.1.2 (C:1-261) Mit 3.6 8.8E+02 0.064 18.8 13.1 66 244-309 89-155 (261)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=48.32 E-value=76 Score=26.85 Aligned_cols=27 Identities=15% Similarity=0.365 Sum_probs=14.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHh
Q 015121 289 GYGIAGAAWATMASQVIAAYMMIINLN 315 (413)
Q Consensus 289 ~~Gi~Gaa~a~~is~~i~~~~~~~~~~ 315 (413)
..|..+..+......++..++.+....
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666655555555555554444443
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=21.98 E-value=1.1e+02 Score=20.51 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015121 329 PSELLAIFELAAPVFVMMMSKVAFFTL 355 (413)
Q Consensus 329 ~~~~~~~l~~~~p~~~~~~~~~~~~~v 355 (413)
-....|++..-+|..+-.........+
T Consensus 67 ~n~~LEiiWTviP~lILi~l~~pS~~~ 93 (100)
T d3dtub2 67 HNSPLEIAWTIVPIVILVAIGAFSLPV 93 (100)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999988766665554443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=19.75 E-value=2.1e+02 Score=22.96 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=11.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015121 290 YGIAGAAWATMASQVIAAYMMIINLNQK 317 (413)
Q Consensus 290 ~Gi~Gaa~a~~is~~i~~~~~~~~~~k~ 317 (413)
+|...+.+...+...+..++.++.++++
T Consensus 376 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 376 IGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4555444433333333334444444433
No 4
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=13.31 E-value=81 Score=17.33 Aligned_cols=33 Identities=9% Similarity=-0.139 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 015121 184 DKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQ 216 (413)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~ 216 (413)
+.|++.+.+..+.++-..++++.-++.+...+|
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCcc
Confidence 457778888888887777777766666555444
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=12.13 E-value=2.1e+02 Score=19.27 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015121 329 PSELLAIFELAAPVFVMMMSKVAFFTL 355 (413)
Q Consensus 329 ~~~~~~~l~~~~p~~~~~~~~~~~~~v 355 (413)
-....|++..-+|..+..........+
T Consensus 73 ~n~~lEi~WTviP~lIL~~laipSl~~ 99 (107)
T d3ehbb2 73 HNTPIEVIWTLVPVLILVAIGAFSLPI 99 (107)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346779999999988777666555544
No 6
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=8.52 E-value=99 Score=17.41 Aligned_cols=31 Identities=6% Similarity=0.007 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 015121 184 DKNEVQHQISVLLFVGLACGFSMLIFTKFFG 214 (413)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~ 214 (413)
+-++...++..++..-..++++.=++.+...
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wr 40 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWK 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4466777788887777777776666665443
No 7
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=5.12 E-value=2.7e+02 Score=14.99 Aligned_cols=29 Identities=10% Similarity=-0.085 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015121 184 DKNEVQHQISVLLFVGLACGFSMLIFTKF 212 (413)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~ 212 (413)
+.|++.+++..+.++-..++++.-++.+.
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~ 36 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFT 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHh
Confidence 45677777777777777766665555443
No 8
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.39 E-value=1.5e+02 Score=17.02 Aligned_cols=32 Identities=9% Similarity=0.009 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 015121 184 DKNEVQHQISVLLFVGLACGFSMLIFTKFFGM 215 (413)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~ 215 (413)
+-++...++..++.+-..++++.=++.+...+
T Consensus 15 EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrP 46 (48)
T d1jo5a_ 15 QAQELHSVYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566777777777777777766666654443
No 9
>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.17 E-value=1.5e+02 Score=15.32 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=11.7
Q ss_pred hcccCCCCCccccccc
Q 015121 9 HFVSSPNSRLKLLSQS 24 (413)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (413)
|.++||-..+.|.+..
T Consensus 3 ~~C~qPIGtkSFip~~ 18 (32)
T d1wyha1 3 SGCEQPLGSRSFVPDK 18 (32)
T ss_dssp TTTCCBTTTSCEEEET
T ss_pred ccccCcccccccccCC
Confidence 5678888888777654
No 10
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.63 E-value=8.8e+02 Score=18.83 Aligned_cols=66 Identities=18% Similarity=0.054 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 015121 244 WPAVLTGWVAQSASLGMK-DSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYM 309 (413)
Q Consensus 244 ~~~~~~~~~~~~~l~~~g-~~~~~~~~~~i~~i~~i~l~~~li~~~~~Gi~Gaa~a~~is~~i~~~~ 309 (413)
.++.....+.+.++.+.- +.|...+..-+...+-+...-+.-+.+.+|-.+-+-++++++.+..+-
T Consensus 89 ~~~~~~lH~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~l~~~iP 155 (261)
T d3cx5c2 89 FFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIP 155 (261)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHHGGGGST
T ss_pred HHHHHHHHHHHHHHhccccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHHHHHHHhcC
Confidence 344555667777776655 456666666554444333334444556788888888888888776553
Done!