Query 015122
Match_columns 413
No_of_seqs 382 out of 643
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:19:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0944 Ubiquitin-specific pro 100.0 3.9E-31 8.5E-36 277.1 7.0 157 3-170 438-627 (763)
2 KOG2689 Predicted ubiquitin re 100.0 1.3E-27 2.9E-32 229.3 16.6 245 118-374 4-277 (290)
3 COG5207 UBP14 Isopeptidase T [ 99.9 4.1E-27 8.8E-32 240.8 8.3 156 3-169 429-613 (749)
4 KOG2699 Predicted ubiquitin re 99.9 1.2E-22 2.6E-27 205.6 3.5 376 21-413 5-399 (407)
5 PF09409 PUB: PUB domain; Int 99.8 2.3E-18 5.1E-23 141.4 8.3 84 318-401 3-87 (87)
6 KOG2507 Ubiquitin regulatory p 99.7 3.3E-17 7.1E-22 165.6 6.8 235 175-411 190-435 (506)
7 smart00580 PUG domain in prote 99.0 2.4E-10 5.3E-15 87.6 4.3 56 324-385 2-57 (58)
8 PF00627 UBA: UBA/TS-N domain; 98.9 1.8E-09 3.9E-14 75.2 4.2 37 113-150 1-37 (37)
9 smart00165 UBA Ubiquitin assoc 98.7 2.6E-08 5.6E-13 68.9 4.9 37 114-151 1-37 (37)
10 cd00194 UBA Ubiquitin Associat 98.7 3.1E-08 6.7E-13 68.8 5.3 38 114-152 1-38 (38)
11 KOG0944 Ubiquitin-specific pro 98.4 2.9E-07 6.2E-12 98.7 5.1 48 112-160 633-680 (763)
12 cd02664 Peptidase_C19H A subfa 97.7 1.2E-05 2.6E-10 80.7 1.2 53 42-101 154-213 (327)
13 cd02668 Peptidase_C19L A subfa 97.7 1.1E-05 2.4E-10 80.6 0.6 53 42-101 176-235 (324)
14 cd02667 Peptidase_C19K A subfa 97.6 1.5E-05 3.3E-10 78.0 0.9 49 43-101 132-186 (279)
15 cd02660 Peptidase_C19D A subfa 97.6 1.8E-05 3.9E-10 78.5 0.7 52 43-101 196-253 (328)
16 cd02663 Peptidase_C19G A subfa 97.4 4.8E-05 1E-09 75.2 1.1 52 42-100 167-225 (300)
17 cd02657 Peptidase_C19A A subfa 97.4 6.8E-05 1.5E-09 73.7 1.6 52 42-100 175-233 (305)
18 cd02661 Peptidase_C19E A subfa 97.3 6.9E-05 1.5E-09 72.8 1.1 89 5-101 135-237 (304)
19 cd02658 Peptidase_C19B A subfa 97.3 6.4E-05 1.4E-09 74.2 0.6 50 40-96 192-247 (311)
20 cd02659 peptidase_C19C A subfa 97.3 7.5E-05 1.6E-09 74.3 0.6 53 42-101 171-230 (334)
21 cd02671 Peptidase_C19O A subfa 97.2 0.00017 3.6E-09 73.1 1.8 53 42-101 200-263 (332)
22 cd02674 Peptidase_C19R A subfa 97.1 0.00017 3.7E-09 67.6 1.1 53 41-100 103-161 (230)
23 cd02673 Peptidase_C19Q A subfa 96.9 0.00032 6.9E-09 68.2 1.4 38 40-85 124-161 (245)
24 TIGR00601 rad23 UV excision re 96.9 0.0013 2.8E-08 68.1 5.1 41 114-155 156-196 (378)
25 KOG1865 Ubiquitin carboxyl-ter 96.6 0.0011 2.4E-08 70.6 2.1 95 5-106 239-347 (545)
26 COG5207 UBP14 Isopeptidase T [ 96.3 0.0016 3.5E-08 68.8 1.8 53 111-165 618-670 (749)
27 COG5533 UBP5 Ubiquitin C-termi 95.7 0.0019 4.1E-08 64.8 -1.3 41 42-89 284-326 (415)
28 cd02662 Peptidase_C19F A subfa 95.4 0.0042 9.1E-08 59.7 0.1 42 40-96 111-158 (240)
29 TIGR00601 rad23 UV excision re 95.1 0.033 7.1E-07 57.8 5.3 43 113-156 336-378 (378)
30 KOG2561 Adaptor protein NUB1, 94.9 0.062 1.4E-06 56.4 6.8 48 110-158 425-472 (568)
31 KOG4598 Putative ubiquitin-spe 94.7 0.008 1.7E-07 65.7 -0.3 53 42-101 234-293 (1203)
32 KOG0011 Nucleotide excision re 94.4 0.056 1.2E-06 54.7 4.9 40 114-154 298-337 (340)
33 KOG0011 Nucleotide excision re 94.1 0.06 1.3E-06 54.5 4.4 41 113-154 134-174 (340)
34 cd02257 Peptidase_C19 Peptidas 93.9 0.031 6.7E-07 51.0 1.8 55 38-99 112-174 (255)
35 cd02672 Peptidase_C19P A subfa 93.7 0.024 5.1E-07 55.9 0.7 40 38-84 130-173 (268)
36 KOG0163 Myosin class VI heavy 93.7 0.95 2.1E-05 50.6 12.8 84 182-268 924-1014(1259)
37 KOG2561 Adaptor protein NUB1, 93.2 0.28 6.1E-06 51.7 7.5 39 113-152 302-340 (568)
38 PTZ00266 NIMA-related protein 92.7 1.5 3.2E-05 51.1 13.2 10 257-266 515-524 (1021)
39 PF09288 UBA_3: Fungal ubiquit 92.6 0.12 2.7E-06 39.3 2.9 30 111-140 6-35 (55)
40 cd02669 Peptidase_C19M A subfa 92.2 0.056 1.2E-06 56.9 0.9 55 40-101 309-369 (440)
41 KOG1029 Endocytic adaptor prot 92.1 2.2 4.8E-05 47.9 12.8 30 126-155 212-241 (1118)
42 KOG1866 Ubiquitin carboxyl-ter 91.9 0.037 8E-07 61.1 -0.7 53 42-101 266-325 (944)
43 PTZ00266 NIMA-related protein 91.3 2.8 6.1E-05 48.8 13.3 9 255-263 518-526 (1021)
44 smart00546 CUE Domain that may 90.1 0.62 1.4E-05 33.1 4.4 37 114-152 2-41 (43)
45 COG1773 Rubredoxin [Energy pro 88.9 0.11 2.3E-06 39.7 -0.3 42 5-50 3-44 (55)
46 KOG0163 Myosin class VI heavy 88.8 5.5 0.00012 44.9 12.3 55 208-263 941-995 (1259)
47 KOG1029 Endocytic adaptor prot 88.4 5.1 0.00011 45.2 11.7 19 113-131 213-231 (1118)
48 PF00443 UCH: Ubiquitin carbox 87.4 0.15 3.2E-06 47.5 -0.6 48 42-101 142-197 (269)
49 KOG2412 Nuclear-export-signal 87.3 14 0.00029 40.3 13.8 15 64-78 20-34 (591)
50 PF08882 Acetone_carb_G: Aceto 87.2 0.28 6.1E-06 42.4 1.1 46 5-51 24-83 (112)
51 PF02845 CUE: CUE domain; Int 87.0 1.9 4.1E-05 30.5 5.2 38 115-153 2-41 (42)
52 PF14555 UBA_4: UBA-like domai 86.5 2 4.3E-05 30.6 5.1 40 117-157 3-43 (43)
53 cd00730 rubredoxin Rubredoxin; 86.1 0.18 3.9E-06 37.7 -0.5 42 6-51 2-43 (50)
54 COG5560 UBP12 Ubiquitin C-term 84.4 0.29 6.3E-06 53.6 -0.2 53 42-101 695-753 (823)
55 KOG1144 Translation initiation 83.5 8.6 0.00019 43.5 10.5 16 187-202 216-231 (1064)
56 PF07499 RuvA_C: RuvA, C-termi 83.5 2.8 6.1E-05 30.5 4.8 32 114-145 3-37 (47)
57 KOG1868 Ubiquitin C-terminal h 82.3 0.32 7E-06 53.8 -0.8 38 43-85 518-555 (653)
58 cd02670 Peptidase_C19N A subfa 82.3 0.52 1.1E-05 46.0 0.7 42 60-101 88-134 (241)
59 PF00301 Rubredoxin: Rubredoxi 82.0 0.46 9.9E-06 35.1 0.1 42 5-50 1-42 (47)
60 KOG0418 Ubiquitin-protein liga 81.8 1.5 3.3E-05 41.3 3.5 39 113-152 161-199 (200)
61 PF12756 zf-C2H2_2: C2H2 type 80.8 0.35 7.7E-06 39.0 -0.9 65 7-72 1-80 (100)
62 cd00350 rubredoxin_like Rubred 79.5 1.1 2.3E-05 30.4 1.3 25 6-51 2-26 (33)
63 KOG4364 Chromatin assembly fac 79.0 78 0.0017 35.5 15.6 9 235-243 313-321 (811)
64 PRK03824 hypA hydrogenase nick 78.5 0.99 2.1E-05 40.3 1.1 47 4-51 69-116 (135)
65 PRK12332 tsf elongation factor 78.2 3.9 8.5E-05 38.9 5.1 41 113-154 3-44 (198)
66 PF15236 CCDC66: Coiled-coil d 76.8 60 0.0013 30.0 12.2 6 177-182 40-45 (157)
67 PRK09377 tsf elongation factor 76.2 5 0.00011 40.4 5.5 41 113-154 4-45 (290)
68 PHA02768 hypothetical protein; 75.8 2.6 5.7E-05 32.2 2.6 39 2-51 2-40 (55)
69 PF09862 DUF2089: Protein of u 75.7 2.6 5.7E-05 36.7 2.9 12 40-51 10-21 (113)
70 TIGR00116 tsf translation elon 75.5 5.4 0.00012 40.2 5.5 41 113-154 3-44 (290)
71 PTZ00121 MAEBL; Provisional 72.9 51 0.0011 40.1 12.9 6 46-51 881-886 (2084)
72 PF07946 DUF1682: Protein of u 71.8 18 0.0004 36.6 8.4 8 71-78 110-117 (321)
73 PF14599 zinc_ribbon_6: Zinc-r 71.3 1.9 4.1E-05 33.6 0.9 28 4-50 29-56 (61)
74 CHL00098 tsf elongation factor 71.2 8.3 0.00018 36.8 5.4 38 116-154 3-41 (200)
75 PHA00732 hypothetical protein 71.0 4.6 9.9E-05 32.9 3.1 35 7-52 3-37 (79)
76 cd02665 Peptidase_C19I A subfa 70.9 1.5 3.2E-05 42.5 0.2 38 60-97 118-160 (228)
77 smart00531 TFIIE Transcription 70.6 3.5 7.6E-05 37.1 2.6 37 2-51 96-132 (147)
78 PF02148 zf-UBP: Zn-finger in 70.1 2.3 5E-05 32.7 1.1 44 5-50 11-57 (63)
79 KOG0010 Ubiquitin-like protein 70.1 6 0.00013 42.4 4.6 37 115-152 455-492 (493)
80 PF07946 DUF1682: Protein of u 69.6 12 0.00027 37.9 6.6 8 28-35 42-49 (321)
81 PF15236 CCDC66: Coiled-coil d 69.4 95 0.0021 28.7 12.8 22 236-257 116-137 (157)
82 KOG2699 Predicted ubiquitin re 69.2 2.7 5.9E-05 44.0 1.8 62 305-371 153-214 (407)
83 PRK06369 nac nascent polypepti 68.2 12 0.00026 32.8 5.2 41 111-152 73-114 (115)
84 PF07227 DUF1423: Protein of u 68.0 1.2E+02 0.0027 32.4 13.6 46 6-51 147-192 (446)
85 PRK12380 hydrogenase nickel in 67.6 3 6.4E-05 36.1 1.4 27 4-51 69-95 (113)
86 TIGR00100 hypA hydrogenase nic 63.7 3.8 8.1E-05 35.5 1.3 27 4-51 69-95 (115)
87 PF05191 ADK_lid: Adenylate ki 63.4 5.3 0.00012 27.8 1.8 30 5-51 1-30 (36)
88 PRK03681 hypA hydrogenase nick 62.7 4.3 9.3E-05 35.2 1.5 10 4-13 69-78 (114)
89 TIGR00310 ZPR1_znf ZPR1 zinc f 60.8 2.1 4.5E-05 40.6 -0.9 38 6-51 1-39 (192)
90 PF09723 Zn-ribbon_8: Zinc rib 60.8 6.7 0.00015 27.9 2.0 34 1-50 1-34 (42)
91 smart00834 CxxC_CXXC_SSSS Puta 60.7 7.1 0.00015 26.8 2.1 16 1-16 1-16 (41)
92 PF14353 CpXC: CpXC protein 60.6 5 0.00011 34.9 1.6 12 40-51 36-47 (128)
93 KOG1144 Translation initiation 60.2 96 0.0021 35.6 11.4 9 337-345 466-474 (1064)
94 PF11626 Rap1_C: TRF2-interact 59.9 13 0.00029 30.4 3.9 37 119-156 2-38 (87)
95 PRK00398 rpoP DNA-directed RNA 58.7 7.1 0.00015 28.1 1.8 28 5-51 3-30 (46)
96 PF00096 zf-C2H2: Zinc finger, 57.9 8.1 0.00018 23.1 1.8 20 7-26 2-21 (23)
97 PRK00409 recombination and DNA 57.8 2.2E+02 0.0048 32.6 14.4 27 114-140 487-513 (782)
98 KOG3654 Uncharacterized CH dom 57.4 80 0.0017 34.4 9.9 38 221-258 414-451 (708)
99 KOG1863 Ubiquitin carboxyl-ter 57.1 4 8.6E-05 48.1 0.4 68 27-101 322-396 (1093)
100 TIGR02605 CxxC_CxxC_SSSS putat 56.6 8.5 0.00018 28.1 2.0 16 1-16 1-16 (52)
101 TIGR00373 conserved hypothetic 56.3 9.8 0.00021 34.8 2.8 30 4-51 108-137 (158)
102 PRK00564 hypA hydrogenase nick 56.2 5.9 0.00013 34.5 1.2 13 3-15 69-81 (117)
103 KOG1870 Ubiquitin C-terminal h 55.7 2.5 5.5E-05 48.3 -1.4 53 42-101 716-774 (842)
104 PF07754 DUF1610: Domain of un 55.7 5.2 0.00011 25.6 0.6 11 40-50 14-24 (24)
105 PF12756 zf-C2H2_2: C2H2 type 54.1 13 0.00029 29.6 3.0 32 5-36 50-81 (100)
106 TIGR00264 alpha-NAC-related pr 54.0 28 0.0006 30.6 5.0 39 112-151 76-115 (116)
107 PRK06231 F0F1 ATP synthase sub 53.9 2E+02 0.0044 27.3 12.7 15 181-195 78-92 (205)
108 PRK00247 putative inner membra 53.8 3.1E+02 0.0067 29.4 14.3 13 24-36 94-106 (429)
109 PF10122 Mu-like_Com: Mu-like 53.6 7.2 0.00016 29.4 1.1 29 5-50 4-32 (51)
110 smart00290 ZnF_UBP Ubiquitin C 53.3 7.9 0.00017 27.9 1.3 31 5-35 11-44 (50)
111 PF05672 MAP7: MAP7 (E-MAP-115 53.0 2E+02 0.0043 27.0 14.9 26 177-202 18-43 (171)
112 PRK06568 F0F1 ATP synthase sub 52.2 1.9E+02 0.0041 26.5 12.5 14 181-194 34-47 (154)
113 KOG3634 Troponin [Cytoskeleton 52.0 77 0.0017 32.7 8.4 21 389-409 307-327 (361)
114 PF05262 Borrelia_P83: Borreli 51.5 1.6E+02 0.0035 32.0 11.3 16 123-138 95-111 (489)
115 cd00729 rubredoxin_SM Rubredox 51.4 9.1 0.0002 26.1 1.3 26 5-51 2-27 (34)
116 PRK09510 tolA cell envelope in 51.3 3.2E+02 0.0069 28.8 13.4 11 390-400 349-359 (387)
117 KOG2072 Translation initiation 51.2 2.4E+02 0.0051 32.7 12.7 22 225-246 805-826 (988)
118 PRK06266 transcription initiat 50.8 13 0.00029 34.7 2.8 30 4-51 116-145 (178)
119 COG4416 Com Mu-like prophage p 50.6 5.5 0.00012 30.4 0.1 30 4-50 3-32 (60)
120 PF05835 Synaphin: Synaphin pr 50.6 36 0.00077 30.8 5.3 20 247-273 58-77 (139)
121 TIGR01069 mutS2 MutS2 family p 50.0 2.8E+02 0.0061 31.8 13.5 26 115-140 483-508 (771)
122 PF13423 UCH_1: Ubiquitin carb 50.0 9.3 0.0002 37.7 1.7 88 5-101 133-237 (295)
123 KOG2412 Nuclear-export-signal 49.8 2.7E+02 0.0059 30.7 12.5 15 363-377 446-460 (591)
124 KOG3080 Nucleolar protein-like 49.7 1E+02 0.0022 31.3 8.8 54 188-241 183-236 (328)
125 PF01155 HypA: Hydrogenase exp 49.6 9.5 0.00021 32.9 1.5 27 4-51 69-95 (113)
126 COG5077 Ubiquitin carboxyl-ter 48.3 7.2 0.00016 44.0 0.7 57 40-101 353-416 (1089)
127 PF13904 DUF4207: Domain of un 47.5 2.9E+02 0.0063 27.3 12.0 38 301-340 224-262 (264)
128 smart00709 Zpr1 Duplicated dom 47.3 5 0.00011 36.9 -0.6 37 7-51 2-38 (160)
129 KOG2462 C2H2-type Zn-finger pr 46.7 8.1 0.00018 38.6 0.7 56 4-65 129-184 (279)
130 KOG2891 Surface glycoprotein [ 46.6 98 0.0021 31.4 8.1 21 67-87 106-126 (445)
131 COG0375 HybF Zn finger protein 46.5 12 0.00026 32.8 1.6 12 40-51 84-95 (115)
132 COG5134 Uncharacterized conser 46.4 11 0.00023 36.6 1.4 50 2-51 39-88 (272)
133 PRK14474 F0F1 ATP synthase sub 46.2 3E+02 0.0064 27.0 12.3 18 181-198 35-52 (250)
134 PF11547 E3_UbLigase_EDD: E3 u 46.2 81 0.0018 23.7 5.6 45 111-156 6-52 (53)
135 KOG0435 Leucyl-tRNA synthetase 46.0 16 0.00035 40.9 2.9 74 5-89 436-516 (876)
136 TIGR02098 MJ0042_CXXC MJ0042 f 46.0 9.9 0.00021 26.0 0.8 34 4-51 1-34 (38)
137 PF01927 Mut7-C: Mut7-C RNAse 45.5 9.4 0.0002 34.3 0.9 43 5-51 91-133 (147)
138 KOG2072 Translation initiation 44.3 2.9E+02 0.0063 32.1 12.1 23 233-255 832-854 (988)
139 PRK13428 F0F1 ATP synthase sub 43.9 4.3E+02 0.0093 28.2 13.9 35 334-370 221-255 (445)
140 COG1656 Uncharacterized conser 43.7 13 0.00029 34.5 1.5 12 6-17 98-109 (165)
141 PF11372 DUF3173: Domain of un 43.6 25 0.00055 27.3 2.8 19 119-137 7-25 (59)
142 CHL00118 atpG ATP synthase CF0 43.4 2.5E+02 0.0053 25.3 12.7 17 181-197 52-68 (156)
143 COG0264 Tsf Translation elonga 43.3 44 0.00095 33.9 5.2 40 113-153 4-44 (296)
144 PHA00733 hypothetical protein 43.2 25 0.00054 31.0 3.2 35 6-51 74-108 (128)
145 PF12171 zf-C2H2_jaz: Zinc-fin 42.6 7.1 0.00015 24.8 -0.3 25 6-30 2-26 (27)
146 PF09845 DUF2072: Zn-ribbon co 42.5 13 0.00027 33.4 1.1 11 7-17 3-13 (131)
147 PF05907 DUF866: Eukaryotic pr 42.4 5.6 0.00012 36.6 -1.1 41 3-51 28-73 (161)
148 PRK07352 F0F1 ATP synthase sub 42.3 2.7E+02 0.0059 25.4 12.3 16 181-196 49-64 (174)
149 PRK00762 hypA hydrogenase nick 42.0 15 0.00032 32.3 1.5 12 4-16 69-80 (124)
150 PRK13460 F0F1 ATP synthase sub 41.8 2.8E+02 0.006 25.4 12.3 14 181-194 46-59 (173)
151 PF02029 Caldesmon: Caldesmon; 41.5 2.9E+02 0.0064 30.1 11.4 21 248-268 311-331 (492)
152 PRK14605 ruvA Holliday junctio 41.5 58 0.0013 30.8 5.5 39 114-152 148-189 (194)
153 PF04615 Utp14: Utp14 protein; 41.3 1.6E+02 0.0035 33.3 9.9 25 246-270 300-324 (735)
154 smart00659 RPOLCX RNA polymera 41.0 22 0.00048 25.7 2.1 17 43-66 20-36 (44)
155 PRK14601 ruvA Holliday junctio 40.7 62 0.0014 30.4 5.6 32 114-145 142-173 (183)
156 PRK05978 hypothetical protein; 40.7 15 0.00032 33.5 1.4 31 3-51 31-61 (148)
157 KOG2907 RNA polymerase I trans 40.7 8.6 0.00019 33.5 -0.2 24 38-66 70-93 (116)
158 PRK09174 F0F1 ATP synthase sub 40.6 3.3E+02 0.0071 25.9 13.2 18 181-198 83-100 (204)
159 KOG4722 Zn-finger protein [Gen 40.5 2.2E+02 0.0047 30.6 9.8 20 180-199 249-268 (672)
160 PRK00247 putative inner membra 40.1 3.6E+02 0.0078 28.9 11.6 8 257-264 373-380 (429)
161 PF13894 zf-C2H2_4: C2H2-type 39.9 26 0.00056 20.4 2.0 20 7-26 2-21 (24)
162 KOG0971 Microtubule-associated 39.9 6.9E+02 0.015 29.6 14.1 80 177-257 223-306 (1243)
163 PF12874 zf-met: Zinc-finger o 39.5 22 0.00047 21.7 1.6 21 6-26 1-21 (25)
164 PRK09173 F0F1 ATP synthase sub 39.0 2.9E+02 0.0062 24.7 12.3 14 181-194 32-45 (159)
165 PRK08475 F0F1 ATP synthase sub 38.9 3.1E+02 0.0067 25.1 12.8 14 181-194 52-65 (167)
166 PRK14475 F0F1 ATP synthase sub 38.9 3E+02 0.0065 25.0 12.7 16 181-196 40-55 (167)
167 KOG2505 Ankyrin repeat protein 38.8 5E+02 0.011 28.6 12.3 48 114-161 403-460 (591)
168 PRK07353 F0F1 ATP synthase sub 38.4 2.7E+02 0.0058 24.2 12.3 18 181-198 35-52 (140)
169 PRK14472 F0F1 ATP synthase sub 38.4 3.1E+02 0.0068 25.0 13.9 14 181-194 48-61 (175)
170 PF06676 DUF1178: Protein of u 37.8 34 0.00073 31.3 3.2 14 1-15 1-14 (148)
171 KOG3993 Transcription factor ( 37.6 11 0.00024 39.8 0.1 19 122-140 455-473 (500)
172 COG1996 RPC10 DNA-directed RNA 36.8 21 0.00045 26.7 1.4 30 3-51 4-33 (49)
173 PRK11546 zraP zinc resistance 36.7 2.2E+02 0.0048 25.9 8.2 59 176-234 42-112 (143)
174 TIGR00084 ruvA Holliday juncti 36.6 44 0.00095 31.5 3.9 25 114-138 147-171 (191)
175 COG3364 Zn-ribbon containing p 36.6 18 0.00039 31.2 1.1 12 6-17 3-14 (112)
176 COG4008 Predicted metal-bindin 36.3 98 0.0021 27.8 5.7 41 110-152 110-150 (153)
177 PF10827 DUF2552: Protein of u 36.0 25 0.00053 28.4 1.7 16 141-156 59-74 (79)
178 PRK13453 F0F1 ATP synthase sub 35.9 3.5E+02 0.0075 24.8 12.7 17 181-197 48-64 (173)
179 KOG1864 Ubiquitin-specific pro 35.5 18 0.00039 40.0 1.2 51 42-99 441-498 (587)
180 PF05890 Ebp2: Eukaryotic rRNA 35.1 2.6E+02 0.0057 27.9 9.3 53 189-241 122-174 (271)
181 PLN03086 PRLI-interacting fact 34.9 1.9E+02 0.0042 32.0 8.9 30 378-407 183-212 (567)
182 PRK14606 ruvA Holliday junctio 34.9 90 0.0019 29.4 5.7 24 115-138 144-167 (188)
183 TIGR01069 mutS2 MutS2 family p 34.8 5.5E+02 0.012 29.5 12.8 11 364-374 713-723 (771)
184 PRK14600 ruvA Holliday junctio 34.5 90 0.002 29.4 5.6 36 114-149 145-181 (186)
185 PRK14471 F0F1 ATP synthase sub 33.8 3.5E+02 0.0077 24.3 12.7 17 181-197 38-54 (164)
186 PF05262 Borrelia_P83: Borreli 33.8 4.3E+02 0.0093 28.8 11.2 8 71-78 49-56 (489)
187 PRK14602 ruvA Holliday junctio 33.6 95 0.0021 29.6 5.7 25 114-138 155-179 (203)
188 COG3937 Uncharacterized conser 33.5 2.7E+02 0.0059 24.2 7.7 28 175-202 36-63 (108)
189 PRK13461 F0F1 ATP synthase sub 33.4 3.5E+02 0.0077 24.1 12.3 17 181-197 35-51 (159)
190 KOG2703 C4-type Zn-finger prot 33.3 17 0.00037 38.2 0.6 27 8-51 42-77 (460)
191 PF14690 zf-ISL3: zinc-finger 33.2 22 0.00047 25.2 0.9 40 43-82 3-43 (47)
192 PRK00116 ruvA Holliday junctio 33.0 74 0.0016 29.9 4.8 26 115-140 150-175 (192)
193 PRK13454 F0F1 ATP synthase sub 33.0 4E+02 0.0087 24.6 13.5 18 181-198 61-78 (181)
194 PF02146 SIR2: Sir2 family; I 32.8 43 0.00093 30.6 3.1 14 4-17 104-117 (178)
195 COG1675 TFA1 Transcription ini 32.6 37 0.0008 31.9 2.6 11 41-51 131-141 (176)
196 CHL00019 atpF ATP synthase CF0 31.5 4.2E+02 0.0091 24.4 13.9 15 181-195 54-68 (184)
197 COG2051 RPS27A Ribosomal prote 31.3 26 0.00056 27.8 1.2 29 4-50 18-46 (67)
198 PRK14473 F0F1 ATP synthase sub 31.3 3.9E+02 0.0084 24.0 12.3 17 181-197 38-54 (164)
199 PRK14603 ruvA Holliday junctio 30.9 1.1E+02 0.0023 29.1 5.5 24 115-138 153-176 (197)
200 PF09831 DUF2058: Uncharacteri 30.8 3.3E+02 0.0072 25.6 8.6 39 226-264 50-88 (177)
201 COG0423 GRS1 Glycyl-tRNA synth 30.7 50 0.0011 36.1 3.6 48 5-53 88-140 (558)
202 PF06107 DUF951: Bacterial pro 30.5 27 0.00059 26.9 1.1 14 2-15 28-41 (57)
203 KOG0681 Actin-related protein 30.4 5.9E+02 0.013 28.3 11.4 76 115-198 206-296 (645)
204 PRK02292 V-type ATP synthase s 30.4 4.3E+02 0.0093 24.2 13.0 20 392-411 168-187 (188)
205 COG5222 Uncharacterized conser 30.3 14 0.00031 37.4 -0.5 45 3-51 272-319 (427)
206 KOG2002 TPR-containing nuclear 30.2 5.6E+02 0.012 30.3 11.7 36 119-156 704-745 (1018)
207 COG1545 Predicted nucleic-acid 30.1 34 0.00073 30.7 1.9 16 30-51 37-52 (140)
208 PRK14604 ruvA Holliday junctio 29.8 1.3E+02 0.0029 28.4 6.0 24 115-138 150-173 (195)
209 PF06936 Selenoprotein_S: Sele 29.4 1.8E+02 0.0038 27.7 6.6 22 222-243 87-108 (190)
210 PLN03086 PRLI-interacting fact 29.4 4.2E+02 0.009 29.5 10.3 8 254-261 57-64 (567)
211 PF08938 HBS1_N: HBS1 N-termin 28.8 29 0.00062 28.0 1.1 28 127-155 45-72 (79)
212 COG1594 RPB9 DNA-directed RNA 28.8 22 0.00048 30.9 0.4 29 42-75 72-100 (113)
213 KOG4571 Activating transcripti 28.6 5.7E+02 0.012 26.0 10.3 6 155-160 197-202 (294)
214 PRK13455 F0F1 ATP synthase sub 28.6 4.7E+02 0.01 24.1 13.9 19 180-198 56-74 (184)
215 KOG0804 Cytoplasmic Zn-finger 28.3 28 0.00061 37.1 1.2 31 6-36 241-274 (493)
216 PF13717 zinc_ribbon_4: zinc-r 28.2 34 0.00074 23.6 1.2 13 3-15 23-35 (36)
217 KOG1265 Phospholipase C [Lipid 28.1 3.2E+02 0.007 32.1 9.3 10 251-260 1156-1165(1189)
218 PF10058 DUF2296: Predicted in 28.0 37 0.0008 25.7 1.5 32 2-50 19-52 (54)
219 PRK14890 putative Zn-ribbon RN 27.9 13 0.00028 28.8 -1.0 12 6-17 8-19 (59)
220 COG1308 EGD2 Transcription fac 27.9 74 0.0016 28.2 3.5 38 112-150 82-120 (122)
221 PRK09510 tolA cell envelope in 27.7 7.5E+02 0.016 26.1 13.4 10 330-339 312-321 (387)
222 PF10669 Phage_Gp23: Protein g 27.7 1.7E+02 0.0037 25.1 5.5 32 195-226 52-83 (121)
223 COG1198 PriA Primosomal protei 27.7 24 0.00052 40.0 0.6 11 41-51 474-484 (730)
224 TIGR03321 alt_F1F0_F0_B altern 27.6 5.7E+02 0.012 24.7 13.9 14 369-382 217-230 (246)
225 PF14205 Cys_rich_KTR: Cystein 27.3 33 0.00072 26.2 1.1 26 43-73 5-30 (55)
226 KOG2891 Surface glycoprotein [ 27.2 6.8E+02 0.015 25.5 12.2 15 114-128 223-237 (445)
227 PF10367 Vps39_2: Vacuolar sor 27.1 27 0.00059 28.6 0.7 27 42-78 78-104 (109)
228 PRK03963 V-type ATP synthase s 27.1 5E+02 0.011 23.9 13.1 20 392-411 179-198 (198)
229 KOG0742 AAA+-type ATPase [Post 27.0 7.5E+02 0.016 26.9 11.2 16 125-140 72-90 (630)
230 KOG2357 Uncharacterized conser 26.9 1.7E+02 0.0037 31.1 6.5 14 256-269 417-430 (440)
231 COG4049 Uncharacterized protei 26.9 33 0.00071 26.5 1.0 28 4-32 16-43 (65)
232 PF10083 DUF2321: Uncharacteri 26.7 16 0.00035 33.6 -0.8 12 41-52 67-78 (158)
233 COG3024 Uncharacterized protei 26.0 39 0.00084 26.7 1.3 11 41-51 6-16 (65)
234 PF04361 DUF494: Protein of un 25.7 1.7E+02 0.0037 26.7 5.7 55 115-185 24-78 (155)
235 KOG0608 Warts/lats-like serine 25.7 42 0.00091 37.9 2.0 39 112-150 87-125 (1034)
236 TIGR00340 zpr1_rel ZPR1-relate 25.5 16 0.00034 33.9 -1.1 37 8-51 1-37 (163)
237 PRK13901 ruvA Holliday junctio 25.3 79 0.0017 30.1 3.5 24 115-138 145-168 (196)
238 smart00355 ZnF_C2H2 zinc finge 25.3 57 0.0012 18.9 1.8 20 7-26 2-21 (26)
239 PF10147 CR6_interact: Growth 25.0 5.6E+02 0.012 24.9 9.3 28 215-242 132-159 (217)
240 PF03811 Zn_Tnp_IS1: InsA N-te 25.0 37 0.0008 23.6 0.9 12 40-51 3-14 (36)
241 cd02669 Peptidase_C19M A subfa 25.0 32 0.00069 36.3 0.9 42 7-50 30-74 (440)
242 PF13912 zf-C2H2_6: C2H2-type 25.0 60 0.0013 20.1 1.9 21 6-26 2-22 (27)
243 PF13451 zf-trcl: Probable zin 24.9 45 0.00098 24.9 1.4 38 4-50 3-41 (49)
244 PRK13455 F0F1 ATP synthase sub 24.1 5.6E+02 0.012 23.5 13.1 8 185-192 75-82 (184)
245 PF04641 Rtf2: Rtf2 RING-finge 24.1 18 0.00039 35.5 -1.1 49 3-52 111-160 (260)
246 COG2331 Uncharacterized protei 23.3 20 0.00043 29.3 -0.8 35 1-51 8-42 (82)
247 PHA00616 hypothetical protein 22.8 44 0.00096 24.4 1.0 28 6-33 2-30 (44)
248 PF05605 zf-Di19: Drought indu 22.7 93 0.002 22.9 2.8 38 5-50 2-39 (54)
249 COG0735 Fur Fe2+/Zn2+ uptake r 22.6 51 0.0011 29.5 1.6 45 5-51 93-142 (145)
250 COG1645 Uncharacterized Zn-fin 22.6 40 0.00086 30.2 0.9 13 39-51 25-37 (131)
251 PRK13428 F0F1 ATP synthase sub 22.4 9.5E+02 0.021 25.5 13.2 21 335-355 312-332 (445)
252 PF01093 Clusterin: Clusterin; 22.4 3.9E+02 0.0085 28.7 8.3 57 204-261 15-71 (436)
253 PF03879 Cgr1: Cgr1 family; I 22.3 5.2E+02 0.011 22.4 10.2 11 176-186 28-38 (108)
254 PRK14472 F0F1 ATP synthase sub 22.3 6E+02 0.013 23.1 13.2 8 186-193 67-74 (175)
255 PRK08476 F0F1 ATP synthase sub 22.2 5.5E+02 0.012 22.7 13.1 18 181-198 37-54 (141)
256 KOG2253 U1 snRNP complex, subu 22.1 7.1E+02 0.015 28.1 10.3 36 190-225 287-322 (668)
257 KOG1071 Mitochondrial translat 21.9 1.8E+02 0.0039 30.0 5.4 40 113-153 45-85 (340)
258 PF00430 ATP-synt_B: ATP synth 21.9 4.9E+02 0.011 21.9 10.2 12 251-262 98-109 (132)
259 TIGR03321 alt_F1F0_F0_B altern 21.9 7.3E+02 0.016 24.0 13.2 17 181-197 35-51 (246)
260 PRK09174 F0F1 ATP synthase sub 21.8 7E+02 0.015 23.7 12.7 6 187-192 103-108 (204)
261 PHA00451 protein kinase 21.7 4E+02 0.0086 27.2 7.7 44 150-194 201-244 (362)
262 COG0846 SIR2 NAD-dependent pro 21.6 57 0.0012 32.2 1.8 16 4-19 121-136 (250)
263 PRK00418 DNA gyrase inhibitor; 21.6 56 0.0012 25.6 1.4 9 43-51 7-15 (62)
264 KOG0477 DNA replication licens 21.5 49 0.0011 37.1 1.5 33 6-52 293-325 (854)
265 PF09731 Mitofilin: Mitochondr 21.3 1.1E+03 0.023 25.7 13.0 87 183-269 294-381 (582)
266 KOG3634 Troponin [Cytoskeleton 21.3 5.5E+02 0.012 26.7 8.7 7 368-374 313-319 (361)
267 COG3877 Uncharacterized protei 21.2 50 0.0011 28.7 1.2 12 40-51 18-29 (122)
268 KOG2989 Uncharacterized conser 21.2 42 0.0009 33.1 0.8 16 1-16 36-51 (253)
269 cd01412 SIRT5_Af1_CobB SIRT5_A 21.1 54 0.0012 31.1 1.6 16 3-18 107-122 (224)
270 KOG3088 Secretory carrier memb 21.0 4.2E+02 0.009 27.1 7.7 47 326-374 164-221 (313)
271 PF07553 Lipoprotein_Ltp: Host 20.8 1.3E+02 0.0027 22.4 3.1 22 115-136 22-46 (48)
272 PF03801 Ndc80_HEC: HEC/Ndc80p 20.7 1.2E+02 0.0025 27.8 3.5 41 112-152 92-137 (157)
273 PF09567 RE_MamI: MamI restric 20.6 53 0.0012 32.7 1.4 11 41-51 95-105 (314)
274 PF11023 DUF2614: Protein of u 20.5 60 0.0013 28.4 1.5 13 2-14 66-78 (114)
275 PRK08222 hydrogenase 4 subunit 20.4 67 0.0015 29.9 2.0 46 6-51 115-163 (181)
276 KOG1363 Predicted regulator of 20.3 5E+02 0.011 28.0 8.7 62 302-373 387-448 (460)
277 KOG2357 Uncharacterized conser 20.2 3.4E+02 0.0073 29.0 7.1 9 93-101 242-250 (440)
278 smart00030 CLb CLUSTERIN Beta 20.1 6.3E+02 0.014 24.4 8.4 57 204-261 21-77 (206)
279 PRK14475 F0F1 ATP synthase sub 20.1 6.6E+02 0.014 22.7 13.1 8 186-193 59-66 (167)
280 COG4481 Uncharacterized protei 20.1 56 0.0012 25.1 1.1 14 2-15 31-44 (60)
281 PF09805 Nop25: Nucleolar prot 20.0 3.6E+02 0.0078 24.1 6.5 8 211-218 32-39 (137)
282 PTZ00172 40S ribosomal protein 20.0 77 0.0017 27.5 2.1 45 5-49 20-78 (108)
No 1
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.9e-31 Score=277.13 Aligned_cols=157 Identities=29% Similarity=0.443 Sum_probs=131.9
Q ss_pred CceeecCcccccccchHHH----------------HHHHhhhccCCCCcchhhhhhcccCCCCCCCCCcccccccccccc
Q 015122 3 GVSLKCGDCGALLRSVQEA----------------QEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRKRTG 66 (413)
Q Consensus 3 ~~~l~C~~C~~~~~~~~~a----------------q~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~~~~~e~~~~~K~t~ 66 (413)
.-|++|..|++|......- +..-+ ...++|.. .+.+|.|++||.+ +.|+|+|+
T Consensus 438 e~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~-cleaff~p---q~~df~s~ac~~K-------~~a~kt~~ 506 (763)
T KOG0944|consen 438 EDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISA-CLEAFFEP---QVDDFWSTACGEK-------KGATKTTR 506 (763)
T ss_pred hhhhhhhccccccccchhheeeEeeccccccccccCCHHH-HHHHhcCC---cchhhhhHhhcCc-------cccccccc
Confidence 3489999999999444331 11111 33344444 3789999999987 89999999
Q ss_pred ccccccchhcccccccccc--Cccc---cCCccccccCCC---CC-CCCcC--------cccccCHHHHHHHHhCCCCHH
Q 015122 67 HTDFVDKTSEAAKPISLEV--PKAT---ADSEEAIDVDMS---GS-QPEEM--------VEPEVDKELLKELEAMGFPVA 129 (413)
Q Consensus 67 ~~tfp~~L~v~~~r~~l~~--p~K~---~~~~~~ldl~~~---g~-~~ee~--------~~~~~~~~~l~~L~~MGF~~~ 129 (413)
|+|||+||++|+.||.|.+ |+|+ ++|||.|||+.| |+ |+|+. +.+.+|+.++.||++||||.+
T Consensus 507 ~ksfP~yLiiqv~rf~~~dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~e 586 (763)
T KOG0944|consen 507 FKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEE 586 (763)
T ss_pred cccCCceEEEEeeEEEecCceeeeeccceecchhhchhhhhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHH
Confidence 9999999999999999976 9999 779999999977 65 77642 445589999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 015122 130 RATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGG 170 (413)
Q Consensus 130 ~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~d~p~~~~~~~~ 170 (413)
+|.|||++|||+++|+|+|||++||+|||+|+|+.+|+++.
T Consensus 587 ac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~ 627 (763)
T KOG0944|consen 587 ACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSP 627 (763)
T ss_pred HHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCC
Confidence 99999999999999999999999999999999999988643
No 2
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-27 Score=229.33 Aligned_cols=245 Identities=25% Similarity=0.360 Sum_probs=179.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHH-HHhcCCCCCCCCCCCCCC--------------------CCCCCCCC
Q 015122 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWV-VEHENDPDIDEMPMVPVS--------------------GGGGASKS 176 (413)
Q Consensus 118 l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl-~~h~dd~d~d~p~~~~~~--------------------~~~~~~k~ 176 (413)
+++|++||||..++.+||..|||.++|.||+|| .+|.+||. |.|...|.. +..+.+++
T Consensus 4 ~~~l~~mgfps~k~e~al~~~~n~~~e~al~wl~~d~~~d~~-~ap~~~p~~~~~~~~~~~~~sg~~~~s~~se~~e~ik 82 (290)
T KOG2689|consen 4 AQSLEEMGFPSGKAEKALAVYGNRGIEQALDWLEMDHAGDPI-DAPLSTPLAADLGRLPTSFESGKLSDSGYSESEEEIK 82 (290)
T ss_pred HHHHHHhcCchhhhhhHhhhhccccHHHHHHHHHhcccCCCc-cccccccchhhhhcccchhcCCCcCCchhhhhhhhcc
Confidence 489999999999999999999999999999999 89999985 666655431 01123689
Q ss_pred CCCHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015122 177 SLTPEEIKLKAQELRERARKK---KEEEEKRMEREREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKI 253 (413)
Q Consensus 177 ~lT~eEk~~k~~el~~k~r~~---r~eeek~~~~e~E~~Rr~~gKe~~~~k~~~ee~e~k~~~e~rkrEK~e~~~ar~ri 253 (413)
.||+||+.++.+.|++++..+ +++-+.++..+++++|+++|++|..+++.+++.++.+++++||++|.++..+|+||
T Consensus 83 ~ls~eE~~~~~~~i~ekik~k~~k~~e~e~~E~~~~~k~~~ks~~~~~~a~~r~q~~e~~~~~qkRrreK~e~~eaRqRV 162 (290)
T KOG2689|consen 83 LLSEEEKKAQTKRILEKIKQKQIKREELELREALEREKQRRKSGDEMSAAKRRLQDDEMRRAAQKRRREKAEDEEARQRV 162 (290)
T ss_pred ccChHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999999999988655 45566788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcccCCCcchhhhhhccCC-CCCC----ccHHHHHHHHHHhhhhcCCchHHHHHHHHHH
Q 015122 254 RQKLEEDKAERRRRLGLPPEDPATTKSSAPVVEEKKSMLP-IRPA----TKVEQMRECLRSLKQNHKDDDAKVKRAFQTL 328 (413)
Q Consensus 254 ~~qIe~Dk~eR~~k~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~v----~~~eqlr~~L~slk~~~~~s~a~~~~a~~tL 328 (413)
++||++||++|+++++...... .++|.. ++.......+ .+|. ..+.|||+++|+..++.|+.. +-|..+
T Consensus 163 ~~~Ie~DKaeRka~~e~~~~~~-q~~P~~-~~~~~s~s~~~~spp~~ys~crlQiRl~DG~Tl~~tF~a~----E~L~~V 236 (290)
T KOG2689|consen 163 LRQIERDKAERKAKYENSVGDS-QPKPVK-PEPVPSPSAPSQSPPTDYSQCRLQIRLPDGQTLTQTFNAR----ETLAAV 236 (290)
T ss_pred HHHHHHhHHHHHHHhccccCCC-CCCCCC-CcCCCCCCccccCCCCcccceEEEEEcCCCCeeeeecCch----hhHHHH
Confidence 9999999999999997522211 111111 1110111111 1111 336999999999999999865 566666
Q ss_pred HHHHhhhccCCCccccccccccchhhhhhccCcccHHHHHHHcCCe
Q 015122 329 LTYIGNVAKNPNEEKFRKIRLSNQTFQDRVGALKGGLEFLELCGFE 374 (413)
Q Consensus 329 ~~~l~Ni~~~P~e~KfRrIr~~N~~f~~kV~~~~ga~e~L~a~GF~ 374 (413)
+.+|. +-.+-+...|-=.+ .|.++++.-..-..-|..+|..
T Consensus 237 R~wVd-~n~~~~~~P~~f~t----~fPR~tf~edD~~KpLq~L~L~ 277 (290)
T KOG2689|consen 237 RLWVD-LNRGDGLDPYSFHT----GFPRVTFTEDDELKPLQELDLV 277 (290)
T ss_pred HHHHH-HhccCCCCCeeeec----CCCceecccccccccHHHhccc
Confidence 66665 22222223443333 5555555544444455555554
No 3
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.1e-27 Score=240.80 Aligned_cols=156 Identities=22% Similarity=0.363 Sum_probs=133.9
Q ss_pred CceeecCcccccc-------------cchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCCCCccccccccccccccc
Q 015122 3 GVSLKCGDCGALL-------------RSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRKRTGHTD 69 (413)
Q Consensus 3 ~~~l~C~~C~~~~-------------~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~~~~~e~~~~~K~t~~~t 69 (413)
.-||+|+.|+.|. .++.++|+.-+ ...++|... .++|+|.+|+.+ .+|+++++|+|
T Consensus 429 e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~-~v~a~f~pd---tiE~~CenCk~K-------~~a~~k~~~ks 497 (749)
T COG5207 429 ERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRK-SVEAFFLPD---TIEWSCENCKGK-------KKASRKPFIKS 497 (749)
T ss_pred cceecccccccccccccceEEEEeecccCcchhhHHH-HHHheECcc---ceeeehhhhcCc-------ccccccchhhc
Confidence 5689999999997 67888998888 888999888 688999999876 79999999999
Q ss_pred cccchhcccccccccc--Cccc-----cCCccccccCCC-C--CCCCcC------cccccCHHHHHHHHhCCCCHHHHHH
Q 015122 70 FVDKTSEAAKPISLEV--PKAT-----ADSEEAIDVDMS-G--SQPEEM------VEPEVDKELLKELEAMGFPVARATR 133 (413)
Q Consensus 70 fp~~L~v~~~r~~l~~--p~K~-----~~~~~~ldl~~~-g--~~~ee~------~~~~~~~~~l~~L~~MGF~~~~a~k 133 (413)
||.||++|+.||.|.| ..|+ ++-++-++++.| . .|..|. .....|+.++.||++||||.++|.|
T Consensus 498 lPk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~r 577 (749)
T COG5207 498 LPKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAAR 577 (749)
T ss_pred cCceeEEecceeeccceeehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHH
Confidence 9999999999999998 6666 334666888765 2 133322 2356789999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 015122 134 ALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSG 169 (413)
Q Consensus 134 AL~~tgn~~~E~A~~Wl~~h~dd~d~d~p~~~~~~~ 169 (413)
||..|||++.|.||||||+||||||+|+|+.+|.+.
T Consensus 578 AL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~v 613 (749)
T COG5207 578 ALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNV 613 (749)
T ss_pred HHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCC
Confidence 999999999999999999999999999999887643
No 4
>KOG2699 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.2e-22 Score=205.61 Aligned_cols=376 Identities=34% Similarity=0.414 Sum_probs=283.7
Q ss_pred HHHHHhhhccCCCCcchhhhhhcccCCCCCCCCCccccccccccccccccccchhccccccccccCccccCCc--ccccc
Q 015122 21 AQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEVPKATADSE--EAIDV 98 (413)
Q Consensus 21 aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~p~K~~~~~--~~ldl 98 (413)
.+.|.+-+-|.+|... .|+.++ .+++.+...++.+.++.-.- .... ..|.++.+.+ ..+-+
T Consensus 5 k~~~~ef~~~~~~~ss----------~~~~~~---~e~~~~~~~~s~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~ 67 (407)
T KOG2699|consen 5 KYNFQEFKCKVNLASS----------LNDVKH---QESVGEQAHTSSTDQSLPHL--PVTL--DTPWPLLNPAPKVNLLL 67 (407)
T ss_pred HHHHHHHhhccccccc----------ccchhh---hHHHHHHhhccCCCCCCCCC--Cccc--ccchhhhccCCCCcccc
Confidence 4556666667777765 344332 25678888888888776444 2222 2233331110 01111
Q ss_pred CC---CCCCCCcCcccccCHHHHHHHHhCCCCH-HHHHHHHHHhCCCCHHH-HHHHHHHhcCCCCCCCCCCCCCC---CC
Q 015122 99 DM---SGSQPEEMVEPEVDKELLKELEAMGFPV-ARATRALHYSGNANVEA-AVNWVVEHENDPDIDEMPMVPVS---GG 170 (413)
Q Consensus 99 ~~---~g~~~ee~~~~~~~~~~l~~L~~MGF~~-~~a~kAL~~tgn~~~E~-A~~Wl~~h~dd~d~d~p~~~~~~---~~ 170 (413)
+. +|.....+..+.+....+.-...|||+. .+...++++.|+...++ |.+|...|..+......+..+.+ ++
T Consensus 68 ~k~~s~gqa~~~~~~~~~~~~i~~~~~~~g~~e~~~t~~~~~~~g~a~~~a~~~~~~~p~~~~~~~~~~~~~e~~~l~~s 147 (407)
T KOG2699|consen 68 SKSSSSGQAAKTNRRNIVFNTILARFDIMGRPEAARTSPALHPSGNQSLEAPAVNFKIPFTSEIQRFKMPKGETNTLESS 147 (407)
T ss_pred ccccccchhhhcccCCcccchhhccccccCCccccccccCcccchhhhhcCCCCcccccccccchhhccccCCccccccc
Confidence 11 1322223445556667777788899999 77778899999988888 89999999988765555444443 23
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 015122 171 GGASKSSLTPEEIKLKAQELRERARKKKEEEEKRMER--EREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKR 248 (413)
Q Consensus 171 ~~~~k~~lT~eEk~~k~~el~~k~r~~r~eeek~~~~--e~E~~Rr~~gKe~~~~k~~~ee~e~k~~~e~rkrEK~e~~~ 248 (413)
....++.+|...-..+.+++.+..+..+.++++.-++ ++|++|.++|+++.+.+..-....++..+..+..|++|+..
T Consensus 148 ~~~~~ss~~~~~~~~k~~e~se~~~d~~~kqe~~~~~~pE~ek~R~rl~~el~~~~v~g~he~le~v~~~~~ae~eEe~~ 227 (407)
T KOG2699|consen 148 GDPEPSSLTKIFVNTKAKELSESGRDIRQKQEQNTERNPEREKERKRLGNELLKEKVLGCHEPLEAVLVLRPAEDEEEYE 227 (407)
T ss_pred CCcCchhhhhccccccchhhhhhhhhhHHHhhhhhccchhhhhhhhccccchhhcccccccchHHHHHHhcccccHHHHH
Confidence 3345777888888889999999999999988888888 99999999999999988866667777778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcc----cCCCcchhhhhh--ccCCCCCCccHHHHHHHHHHhhhhcCCchHHHH
Q 015122 249 AREKIRQKLEEDKAERRRRLGLPPEDPAT----TKSSAPVVEEKK--SMLPIRPATKVEQMRECLRSLKQNHKDDDAKVK 322 (413)
Q Consensus 249 ar~ri~~qIe~Dk~eR~~k~~~~~~~~~~----~~~~~~~~~e~~--~~~~~~~v~~~eqlr~~L~slk~~~~~s~a~~~ 322 (413)
+++.++++.+.++.+|++.+|.|..+... ..++.+...... ...+.+++.....+|.++..+..++..++....
T Consensus 228 ~~e~~l~k~~s~~ser~~~l~~P~~tk~~Re~~~~~~~~la~~~~l~v~f~~~~i~~~~~~r~e~i~~~q~l~~~~~~~k 307 (407)
T KOG2699|consen 228 LVEKTLRKLQSLKSERKRLLGAPPVTKADRESAANPSLPLAPAIELPVKFPDREIKQEAFLRSELIELLQNLVSSDLKEK 307 (407)
T ss_pred HHHHHHHHHHHHhhhhhhhhcCCccchhHHHHhhccCccccccceeeeecChHHHHHHHHhhHHHHHHHHHhhhhhhcch
Confidence 99999999999999999999988863321 111111111111 122333334457799999999988887765433
Q ss_pred H-HHHHHHHHHhhhccCCCccccccccccchhhhhhccCcccHHHHHHHcCCeeecCCceEEecCCCCCHHHHHHHHHHH
Q 015122 323 R-AFQTLLTYIGNVAKNPNEEKFRKIRLSNQTFQDRVGALKGGLEFLELCGFEKIEGGEFLFLPREKVDMAVLNSAGSEL 401 (413)
Q Consensus 323 ~-a~~tL~~~l~Ni~~~P~e~KfRrIr~~N~~f~~kV~~~~ga~e~L~a~GF~~~~~~~~lvl~~~~~~~~~L~~A~~~L 401 (413)
+ +..++++|..|++++|+...|+.|++.|..|...++.+.+|++++..|||-...+.+++++|..+.+......+-..|
T Consensus 308 ~~~~~~~~~~~~~~ak~pd~~l~q~~f~~~~~~~~~~g~~~~a~~~~~l~~el~~~~~e~~~~p~~~~~~~~~~~~~s~l 387 (407)
T KOG2699|consen 308 EMAFLTLYTPFKNVAKDPDGELLQGIFLPNELLLARYGFVSEALEFMELPGELLQEGSEFLSLPSVNADNKRNPQAPSEL 387 (407)
T ss_pred HHHHHHhhcccchhccCcchhhhhhhhchhHHHHHHHhccccchhhhhhhhHHhhcccccccccccccccccCCCCcccc
Confidence 3 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCC
Q 015122 402 TSAINNPFFGVL 413 (413)
Q Consensus 402 ~~Al~~p~fg~l 413 (413)
.++|+|||||++
T Consensus 388 ~~~~~~~~~~~~ 399 (407)
T KOG2699|consen 388 NSSIANPFFRPI 399 (407)
T ss_pred cCccccccccch
Confidence 999999999985
No 5
>PF09409 PUB: PUB domain; InterPro: IPR018997 The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain []. This domain is also found on other proteins linked to the ubiquitin-proteasome system. ; PDB: 2CM0_A 2CCQ_A 2D5U_A 2HPL_A 2HPJ_A.
Probab=99.75 E-value=2.3e-18 Score=141.36 Aligned_cols=84 Identities=43% Similarity=0.693 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCccccccccccchhhhhhccCcccHHHHHHHcCCeeecCCceEEecC-CCCCHHHHHH
Q 015122 318 DAKVKRAFQTLLTYIGNVAKNPNEEKFRKIRLSNQTFQDRVGALKGGLEFLELCGFEKIEGGEFLFLPR-EKVDMAVLNS 396 (413)
Q Consensus 318 ~a~~~~a~~tL~~~l~Ni~~~P~e~KfRrIr~~N~~f~~kV~~~~ga~e~L~a~GF~~~~~~~~lvl~~-~~~~~~~L~~ 396 (413)
.++..+|+++|.+|+.||+.||+|+|||+||++|++|+++|++++||.++|.++||+...+++||+|+. +..+...|+.
T Consensus 3 ~~~~~~al~~L~~il~NI~~~P~~~kyR~Ir~~N~~f~~~i~~~~g~~~~L~~~GF~~~~~~~~~vl~~~~~~~~~~l~~ 82 (87)
T PF09409_consen 3 PEAFQKALETLEKILSNILSNPNEEKYRRIRLSNKTFQEKILPVPGARELLEALGFREVTDEEFLVLPEDSEPDLQHLQK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT-CGGGEEETTSHHHHHHTTTSTTHHHHHHHHT-EE---SSEEE----TTS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCCcccceEeecCcchHHHHhcCChhHHHHHHHCCCEEecCCCEEEEecCCcCCHHHHHH
Confidence 356889999999999999999999999999999999999999999999999999999876789999983 3368889988
Q ss_pred HHHHH
Q 015122 397 AGSEL 401 (413)
Q Consensus 397 A~~~L 401 (413)
|+..|
T Consensus 83 ~~~~l 87 (87)
T PF09409_consen 83 ALSEL 87 (87)
T ss_dssp HHH--
T ss_pred HHhcC
Confidence 88765
No 6
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=99.68 E-value=3.3e-17 Score=165.59 Aligned_cols=235 Identities=18% Similarity=0.154 Sum_probs=165.5
Q ss_pred CCCCCHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015122 175 KSSLTPEEIKLKAQELRERA---RKKKEEEEKRMEREREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRARE 251 (413)
Q Consensus 175 k~~lT~eEk~~k~~el~~k~---r~~r~eeek~~~~e~E~~Rr~~gKe~~~~k~~~ee~e~k~~~e~rkrEK~e~~~ar~ 251 (413)
+.||..+ -.++.+|.+++ +.++.+++.+.++++|..||+.|||++..+...++...++++++++|||.++..+|+
T Consensus 190 qrplea~--~~rl~~ltk~leqkr~Ek~kee~~hekeee~~rr~agkE~~~~~a~~~ee~tkrm~eqrkrer~e~~aare 267 (506)
T KOG2507|consen 190 QRPLEAE--PSRLCDLTKNLEQKRVEKTKEEVEHEKEEEPLRRQAGKEPIRPTAPGTEENTKRMREQRKRERKEGTAARE 267 (506)
T ss_pred ccchhhh--hhHHHHHHhhccccchhhhHHHHHHHhhhhhHhhhhcccccccccccchHHHHHHHHHHHHHHHhhHHHHH
Confidence 3444433 35555555544 555667778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcccCCCcchhhhhhccCCCCCCccHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHH
Q 015122 252 KIRQKLEEDKAERRRRLGLPPEDPATTKSSAPVVEEKKSMLPIRPATKVEQMRECLRSLKQNHKDDDAKVKRAFQTLLTY 331 (413)
Q Consensus 252 ri~~qIe~Dk~eR~~k~~~~~~~~~~~~~~~~~~~e~~~~~~~~~v~~~eqlr~~L~slk~~~~~s~a~~~~a~~tL~~~ 331 (413)
||++||++||++|+.+|+.+....++.++.+...++..-....+.-..+.|||+++|+.+++.|++.+.+.....++...
T Consensus 268 RI~aqiaadraera~rf~k~v~t~et~k~aa~~ae~~~ge~~~~~d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~ 347 (506)
T KOG2507|consen 268 RILAQIAADRAERAIRFTKSVDTKETMKPAAEGAEEEDGEKSKKADDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQN 347 (506)
T ss_pred HHHHHhhccHHHHHhhhcCccchhhhcchhhhhccccccccccccceeEEEEecCCccchhhcCCcchHHHHHHHHHHhc
Confidence 99999999999999999998887766666544332221111011112379999999999999999987666666666655
Q ss_pred HhhhccCCCc-cccccccccchhhhhhccCcc---cHHHHHHHcCCeee-cCCceEEecC---CCCCHHHHHHHHHHHHH
Q 015122 332 IGNVAKNPNE-EKFRKIRLSNQTFQDRVGALK---GGLEFLELCGFEKI-EGGEFLFLPR---EKVDMAVLNSAGSELTS 403 (413)
Q Consensus 332 l~Ni~~~P~e-~KfRrIr~~N~~f~~kV~~~~---ga~e~L~a~GF~~~-~~~~~lvl~~---~~~~~~~L~~A~~~L~~ 403 (413)
..|-+.+.+- ..|.|--++|..+.++++.+. .+.-+++.-|-.-. .-+.+|.... +.+.++++-.-+..+..
T Consensus 348 ~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~r~t~s~~gss~s~sw~ll~pv~~gl~altr~~s~f 427 (506)
T KOG2507|consen 348 QTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKKRATVSQRGSSYSESWNLLDPVSGGLFALTRRVSSF 427 (506)
T ss_pred ccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecCCcceEEecCccchhhcccCccchhHHHHHHHHHHH
Confidence 5665666544 789999999999999887652 33222222222100 0111221111 33456777777777778
Q ss_pred hhccCCCC
Q 015122 404 AINNPFFG 411 (413)
Q Consensus 404 Al~~p~fg 411 (413)
+-.+||||
T Consensus 428 ~~~f~wpg 435 (506)
T KOG2507|consen 428 ANPFSWPG 435 (506)
T ss_pred hccCCCCC
Confidence 88888887
No 7
>smart00580 PUG domain in protein kinases, N-glycanases and other nuclear proteins.
Probab=99.03 E-value=2.4e-10 Score=87.56 Aligned_cols=56 Identities=32% Similarity=0.596 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhhccCCCccccccccccchhhhhhccCcccHHHHHHHcCCeeecCCceEEec
Q 015122 324 AFQTLLTYIGNVAKNPNEEKFRKIRLSNQTFQDRVGALKGGLEFLELCGFEKIEGGEFLFLP 385 (413)
Q Consensus 324 a~~tL~~~l~Ni~~~P~e~KfRrIr~~N~~f~~kV~~~~ga~e~L~a~GF~~~~~~~~lvl~ 385 (413)
|+.+|++|+.||+.||+|.| +|+.|+++|++++||.++|.++||......++|.+|
T Consensus 2 sv~dLLr~irNi~~hp~e~k------~n~~~~~~l~~~pg~~~~l~~~gFp~l~~~~~y~l~ 57 (58)
T smart00580 2 SVRDLLRALRNILHHPREEK------GNPAIKERLGDVPGGFELYFTVGFPRLLISEVYTLP 57 (58)
T ss_pred cHHHHHHHHHHHhhCcchhh------cCHHHHHHhcCCCcHHHHHHHcCCCcccccceeeec
Confidence 78999999999999999999 999999999999999999999999976666667665
No 8
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=98.89 E-value=1.8e-09 Score=75.15 Aligned_cols=37 Identities=41% Similarity=0.701 Sum_probs=34.2
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHH
Q 015122 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWV 150 (413)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl 150 (413)
+|++.|.+|++|||+++.|++||..++| |++.|++||
T Consensus 1 i~~~~v~~L~~mGf~~~~~~~AL~~~~~-nve~A~~~L 37 (37)
T PF00627_consen 1 IDEEKVQQLMEMGFSREQAREALRACNG-NVERAVDWL 37 (37)
T ss_dssp SHHHHHHHHHHHTS-HHHHHHHHHHTTT-SHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHhC
Confidence 4688999999999999999999999999 999999998
No 9
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=98.70 E-value=2.6e-08 Score=68.91 Aligned_cols=37 Identities=35% Similarity=0.560 Sum_probs=34.5
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHH
Q 015122 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVV 151 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~ 151 (413)
+++.+++|++|||+++.|..||+.+++ +++.|++|||
T Consensus 1 ~~~~v~~L~~mGf~~~~a~~aL~~~~~-d~~~A~~~L~ 37 (37)
T smart00165 1 DEEKIDQLLEMGFSREEALKALRAANG-NVERAAEYLL 37 (37)
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHC
Confidence 367899999999999999999999998 8999999996
No 10
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=98.70 E-value=3.1e-08 Score=68.82 Aligned_cols=38 Identities=47% Similarity=0.754 Sum_probs=35.3
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015122 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~ 152 (413)
+++.+++|++|||+++.|..||..+++ |++.|++||++
T Consensus 1 ~~~~v~~L~~mGf~~~~~~~AL~~~~~-d~~~A~~~L~~ 38 (38)
T cd00194 1 DEEKLEQLLEMGFSREEARKALRATNN-NVERAVEWLLE 38 (38)
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHhC
Confidence 357899999999999999999999998 99999999984
No 11
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.9e-07 Score=98.67 Aligned_cols=48 Identities=42% Similarity=0.663 Sum_probs=44.3
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCC
Q 015122 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDID 160 (413)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~d 160 (413)
+++++.|.++++|||++++|.+||..|+| +||.|+||||+|+|++-.|
T Consensus 633 ~~~e~~v~si~smGf~~~qa~~aL~~~n~-nveravDWif~h~d~~~ed 680 (763)
T KOG0944|consen 633 EVDEESVASIVSMGFSRNQAIKALKATNN-NVERAVDWIFSHMDIPVED 680 (763)
T ss_pred CCChhHheeeeeecCcHHHHHHHHHhcCc-cHHHHHHHHHhcccccccc
Confidence 68999999999999999999999999988 9999999999999966333
No 12
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.70 E-value=1.2e-05 Score=80.72 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=46.1
Q ss_pred hcccCCCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccCCC
Q 015122 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 42 ~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~~~ 101 (413)
.|.|+.|++. ..++|++.|.++|++|+|+.+||.++. ..|+ +..|..|||+.+
T Consensus 154 ~~~C~~C~~~-------~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~ 213 (327)
T cd02664 154 QYYCEKCASL-------QDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVR 213 (327)
T ss_pred ceeCCccCCc-------cceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCcc
Confidence 4999999986 689999999999999999999999874 5677 667889998755
No 13
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.68 E-value=1.1e-05 Score=80.59 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=46.4
Q ss_pred hcccCCCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccCCC
Q 015122 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 42 ~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~~~ 101 (413)
.|.|+.|+++ ..++|++.|.++|++|+|+.+||.++. +.|+ +..|+.|||+.|
T Consensus 176 ~~~C~~C~~~-------~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~ 235 (324)
T cd02668 176 QYFCESCNSK-------TDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEY 235 (324)
T ss_pred cccCCCCCce-------eeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhh
Confidence 3899999986 678999999999999999999999873 6777 667999999865
No 14
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.63 E-value=1.5e-05 Score=78.03 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=43.6
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhcccccccccc---Cccc---cCCccccccCCC
Q 015122 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 43 ~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~---p~K~---~~~~~~ldl~~~ 101 (413)
|.|+.|++ ++|++.|.++|++|+|+.+||.++. +.|+ +..|+.|||+.|
T Consensus 132 ~~C~~C~~----------a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~~ 186 (279)
T cd02667 132 FACENCTK----------AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAPF 186 (279)
T ss_pred ccCCccCc----------eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhhc
Confidence 89999985 6899999999999999999999994 6787 668999999866
No 15
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.59 E-value=1.8e-05 Score=78.54 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=45.9
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhcccccccccc---Cccc---cCCccccccCCC
Q 015122 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 43 ~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~---p~K~---~~~~~~ldl~~~ 101 (413)
|.|+.||.+ +.+.|++.|.++|++|+|+.+||..+. +.|+ +..|..|||+.+
T Consensus 196 ~~C~~C~~~-------~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~~ 253 (328)
T cd02660 196 YKCSGCGST-------QEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPY 253 (328)
T ss_pred ccCCCCCCc-------cceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhhh
Confidence 689999986 688999999999999999999999985 6787 667889999865
No 16
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.42 E-value=4.8e-05 Score=75.21 Aligned_cols=52 Identities=10% Similarity=0.015 Sum_probs=44.8
Q ss_pred hcccCCCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccCC
Q 015122 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM 100 (413)
Q Consensus 42 ~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~~ 100 (413)
.|.|+.|+++ ..++|++.|..+|++|+|+.+||.++. ..|+ +..|..||+..
T Consensus 167 ~~~C~~C~~~-------~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~ 225 (300)
T cd02663 167 KFYCDECCSL-------QEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFN 225 (300)
T ss_pred cEECCCCCCc-------eeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEeccc
Confidence 4899999986 688999999999999999999999874 5676 66788888864
No 17
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.37 E-value=6.8e-05 Score=73.75 Aligned_cols=52 Identities=8% Similarity=-0.037 Sum_probs=43.1
Q ss_pred hcccCCCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccCC
Q 015122 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM 100 (413)
Q Consensus 42 ~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~~ 100 (413)
...|+.||.. ..++|++.|.++|++|+|+.+||.++. ..|+ +..|..||++.
T Consensus 175 ~~~~~~~~~~-------~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~ 233 (305)
T cd02657 175 EKHSPTLGRD-------AIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYE 233 (305)
T ss_pred hhcCcccCCC-------ceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEeccc
Confidence 3589999875 578999999999999999999999874 4455 66788999874
No 18
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.33 E-value=6.9e-05 Score=72.84 Aligned_cols=89 Identities=15% Similarity=0.099 Sum_probs=59.6
Q ss_pred eeecCcccccccchHH----------HHHHHhhhccCCCCcch-hhhhhcccCCCCCCCCCccccccccccccccccccc
Q 015122 5 SLKCGDCGALLRSVQE----------AQEHAELTSHSNFSEST-EAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDK 73 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~----------aq~h~~~tgh~~F~e~~-e~~~~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~ 73 (413)
.++|..|+.+-..... ...+ .......|.... +....|.|+.||++ ..+.+++.+.++|++
T Consensus 135 ~~~C~~C~~~s~~~e~~~~l~l~i~~~~~l-~~~l~~~~~~e~~~~~~~~~C~~C~~~-------~~~~~~~~i~~~P~i 206 (304)
T cd02661 135 QVKCLNCKHVSNTYDPFLDLSLDIKGADSL-EDALEQFTKPEQLDGENKYKCERCKKK-------VKASKQLTIHRAPNV 206 (304)
T ss_pred eEEeCCCCCCcCccccceeeeeecCCCCcH-HHHHHHhcCceeeCCCCCeeCCCCCCc-------cceEEEEEEecCCcE
Confidence 6789999976532211 1111 112233333321 11223899999986 678899999999999
Q ss_pred hhccccccccccCccc---cCCccccccCCC
Q 015122 74 TSEAAKPISLEVPKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 74 L~v~~~r~~l~~p~K~---~~~~~~ldl~~~ 101 (413)
|+|+.+||..+...|+ +..|..||++.+
T Consensus 207 L~i~l~Rf~~~~~~Ki~~~v~f~~~L~l~~~ 237 (304)
T cd02661 207 LTIHLKRFSNFRGGKINKQISFPETLDLSPY 237 (304)
T ss_pred EEEEEeccccCCccccCCeEecCCeechhhc
Confidence 9999999999865565 556888888754
No 19
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.31 E-value=6.4e-05 Score=74.23 Aligned_cols=50 Identities=28% Similarity=0.387 Sum_probs=42.0
Q ss_pred hhhcccCCCCCCCCCccccccccccccccccccchhccccccccc-c--Cccc---cCCcccc
Q 015122 40 VLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLE-V--PKAT---ADSEEAI 96 (413)
Q Consensus 40 ~~~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~-~--p~K~---~~~~~~l 96 (413)
.+++.|+.||++ ..+.|++.+.++|++|+|+.+||... + |+|+ +..|..+
T Consensus 192 ~i~~~C~~C~~~-------~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l 247 (311)
T cd02658 192 TIEDFCSTCKEK-------TTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEEL 247 (311)
T ss_pred cccccccCCCCc-------ccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCcC
Confidence 567899999986 78999999999999999999999994 3 8887 4455544
No 20
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.27 E-value=7.5e-05 Score=74.27 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=45.4
Q ss_pred hcccCCCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccCCC
Q 015122 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 42 ~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~~~ 101 (413)
.|.|+.|+++ ..+.|+..|.++|++|+|+.+||.++. ..|+ +..|..||++.+
T Consensus 171 ~~~C~~C~~~-------~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~ 230 (334)
T cd02659 171 KYFCEKCGKK-------VDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPY 230 (334)
T ss_pred cEecCcCCCc-------ccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCccc
Confidence 3999999986 678999999999999999999999863 5666 667889999865
No 21
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.16 E-value=0.00017 Score=73.11 Aligned_cols=53 Identities=6% Similarity=0.021 Sum_probs=42.8
Q ss_pred hcccCCCCCCCCCccccccccccccccccccchhcccccccccc--------Cccc---cCCccccccCCC
Q 015122 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--------PKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 42 ~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~--------p~K~---~~~~~~ldl~~~ 101 (413)
.|.|+.|+++ +.++|++.|.++|++|+|+.+||.+.. ..|+ +..|..||+..+
T Consensus 200 ~y~C~~C~~~-------~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~ 263 (332)
T cd02671 200 KYFCENCHHY-------TEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEW 263 (332)
T ss_pred CeeCCCCCCc-------eeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCccccccccc
Confidence 3999999986 789999999999999999999999652 3455 555777777543
No 22
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.10 E-value=0.00017 Score=67.60 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=43.1
Q ss_pred hhcccCCCCCCCCCccccccccccccccccccchhcccccccccc--Cccc---cCCc-cccccCC
Q 015122 41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDM 100 (413)
Q Consensus 41 ~~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~--p~K~---~~~~-~~ldl~~ 100 (413)
..+.|+.||+. ..+.++..|.++|++|+|+.+||...+ ..|+ +..| +.+|++.
T Consensus 103 ~~~~C~~C~~~-------~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~ 161 (230)
T cd02674 103 NAWKCPKCKKK-------RKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTP 161 (230)
T ss_pred CceeCCCCCCc-------cceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccccccc
Confidence 35899999986 678899999999999999999999985 6666 4445 4577654
No 23
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.94 E-value=0.00032 Score=68.22 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=33.2
Q ss_pred hhhcccCCCCCCCCCccccccccccccccccccchhcccccccccc
Q 015122 40 VLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV 85 (413)
Q Consensus 40 ~~~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~ 85 (413)
.+++.|+.|+.. .++|+++|.+||++|+|+.+||.+..
T Consensus 124 ~~e~~C~~C~~~--------~a~k~~~i~~~P~vL~i~lkRf~~~~ 161 (245)
T cd02673 124 PIEKDCSSCKCE--------SAISSERIMTFPECLSINLKRYKLRI 161 (245)
T ss_pred ccCccCCCCCCc--------cceeechhhhCChhhEEeeEeeeecc
Confidence 567999999873 67889999999999999999998764
No 24
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.87 E-value=0.0013 Score=68.11 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=37.7
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcC
Q 015122 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN 155 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~d 155 (413)
.+..|+.|++|||+++.+.+||++.-| |.++|++||+...-
T Consensus 156 ~e~~I~~i~eMGf~R~qV~~ALRAafN-NPdRAVEYL~tGIP 196 (378)
T TIGR00601 156 RETTIEEIMEMGYEREEVERALRAAFN-NPDRAVEYLLTGIP 196 (378)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhC-CHHHHHHHHHhCCC
Confidence 477899999999999999999999998 99999999998643
No 25
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0011 Score=70.61 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=67.0
Q ss_pred eeecCcccccc----------cchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCCCCccccccccccccccccccch
Q 015122 5 SLKCGDCGALL----------RSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKT 74 (413)
Q Consensus 5 ~l~C~~C~~~~----------~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L 74 (413)
.++|..|+.+= .+-.+++.+.++--+-.=-|..+-.--|+|..|.++ +.|.|+..+..-|.+|
T Consensus 239 ~vkC~~C~~vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~-------v~A~K~lti~raPnVL 311 (545)
T KOG1865|consen 239 QIKCLHCKGVSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQK-------VPASKQLTIHRAPNVL 311 (545)
T ss_pred ceecccCCCcccccccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhh-------CcccceeeeecCCceE
Confidence 58999999886 222244444432221111111111223999999987 8999999999999999
Q ss_pred hccccccccccCccc---cCCccccccCCC-CCCCC
Q 015122 75 SEAAKPISLEVPKAT---ADSEEAIDVDMS-GSQPE 106 (413)
Q Consensus 75 ~v~~~r~~l~~p~K~---~~~~~~ldl~~~-g~~~e 106 (413)
.|+.+||+...--|+ |..|+.|||..| ..+++
T Consensus 312 Ti~LKRF~~~~~gKI~K~I~fPE~LDl~PyMS~~~e 347 (545)
T KOG1865|consen 312 TLHLKRFSNGTGGKISKPVSFPETLDLQPYMSQPNE 347 (545)
T ss_pred EEeeehhccCcccccccccCCcccccccccccCCCC
Confidence 999999999876666 778999999988 33443
No 26
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0016 Score=68.81 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=45.0
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015122 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMV 165 (413)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~d~p~~~ 165 (413)
.+||+..+..|.+|||..+.|+|||.-+++ +++.+++|++.|.|. .+++|..+
T Consensus 618 keVdE~~~~Slle~Gln~n~~Rkal~~~n~-d~~r~V~w~~N~~D~-tF~EP~v~ 670 (749)
T COG5207 618 KEVDESKARSLLENGLNPNLCRKALMDMNT-DSKRRVVWCINDDDG-TFPEPEVP 670 (749)
T ss_pred ccccHHHHHHHHHcCCCHHHHHHHHHHccC-CchheEEEEEeCCCC-CCCCCCCC
Confidence 468999999999999999999999988776 999999999995544 37776543
No 27
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.0019 Score=64.80 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=35.8
Q ss_pred hcccCCCCCCCCCccccccccccccccccccchhcccccccccc--Cccc
Q 015122 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT 89 (413)
Q Consensus 42 ~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~--p~K~ 89 (413)
-.+||.||++ ..++|+....-.|++|+|+.+||++-. |+|+
T Consensus 284 ~W~CpkC~~k-------~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~ki 326 (415)
T COG5533 284 AWRCPKCGRK-------ESSRKRMEILVLPDVLIIHISRFHISVMGRKKI 326 (415)
T ss_pred cccCchhccc-------ccchheEEEEecCceEEEEeeeeeEEeeccccc
Confidence 3799999987 678899999999999999999999764 7774
No 28
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=95.42 E-value=0.0042 Score=59.67 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=33.9
Q ss_pred hhhcccCCCCCCCCCccccccccccccccccccchhcccccccccc---Cccc---cCCcccc
Q 015122 40 VLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAI 96 (413)
Q Consensus 40 ~~~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~---p~K~---~~~~~~l 96 (413)
+.++.|+.| ++.|.++|++|+|+.+||.++. +.|+ +..|+.|
T Consensus 111 l~~~~C~~C---------------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l 158 (240)
T cd02662 111 IDDYKCDRC---------------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL 158 (240)
T ss_pred ccCcCCCCC---------------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc
Confidence 446999999 3569999999999999999885 6777 5566665
No 29
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.06 E-value=0.033 Score=57.79 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=39.2
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 015122 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (413)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (413)
-+.++++.|.+|||+++.+.-|-+++.. |.|.|.||||+|..|
T Consensus 336 eE~~AIeRL~~LGF~r~~viqaY~ACdK-NEelAAn~Lf~~~~~ 378 (378)
T TIGR00601 336 EEKEAIERLCALGFDRGLVIQAYFACDK-NEELAANYLLSQNFD 378 (378)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCC-cHHHHHHHHHhhcCC
Confidence 4788999999999999999999988774 999999999999876
No 30
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.91 E-value=0.062 Score=56.40 Aligned_cols=48 Identities=31% Similarity=0.385 Sum_probs=42.5
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCC
Q 015122 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (413)
Q Consensus 110 ~~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d 158 (413)
.+++|...+.+|+.|||++..|+-||..+|| +.+.|...|......+.
T Consensus 425 p~~vd~~~la~Lv~mGF~e~~A~~ALe~~gn-n~~~a~~~L~~s~~n~~ 472 (568)
T KOG2561|consen 425 PEQVDGISLAELVSMGFEEGKARSALEAGGN-NEDTAQRLLSASVANEG 472 (568)
T ss_pred CcccchhhHHHHHHhccccchHHHHHHhcCC-cHHHHHHHHHHhCCCCc
Confidence 3458999999999999999999999999888 89999999987776653
No 31
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.008 Score=65.68 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=46.0
Q ss_pred hcccCCCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccCCC
Q 015122 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 42 ~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~~~ 101 (413)
-|-|..|.++| -|.|--+|++||=.|.++.+||+|+- -.|| +-.|+.|||..|
T Consensus 234 qy~ce~ck~k~-------dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~ 293 (1203)
T KOG4598|consen 234 QYMCENCKSKQ-------DAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDY 293 (1203)
T ss_pred HHHHhhhhhhh-------hhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHh
Confidence 48999999985 67889999999999999999999993 6787 557999999854
No 32
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=94.42 E-value=0.056 Score=54.71 Aligned_cols=40 Identities=38% Similarity=0.588 Sum_probs=36.8
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 015122 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (413)
+.++++-|..|||++..+.-|.+++. +|-|.|.||||+|+
T Consensus 298 e~eAIeRL~alGF~ralViqayfACd-KNEelAAN~Ll~~~ 337 (340)
T KOG0011|consen 298 EKEAIERLEALGFPRALVIQAYFACD-KNEELAANYLLSHS 337 (340)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHhcC-ccHHHHHHHHHhhc
Confidence 66889999999999999999988865 59999999999999
No 33
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=94.11 E-value=0.06 Score=54.48 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=37.4
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 015122 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (413)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (413)
..+..+.++++|||.+....+||++.-| +.++|++||+...
T Consensus 134 ~~e~~V~~Im~MGy~re~V~~AlRAafN-NPeRAVEYLl~GI 174 (340)
T KOG0011|consen 134 EYEQTVQQIMEMGYDREEVERALRAAFN-NPERAVEYLLNGI 174 (340)
T ss_pred hhHHHHHHHHHhCccHHHHHHHHHHhhC-ChhhhHHHHhcCC
Confidence 4678899999999999999999999998 8999999999754
No 34
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=93.87 E-value=0.031 Score=51.01 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=44.2
Q ss_pred hhhhhcccCCCC--CCCCCccccccccccccccccccchhcccccccccc---Cccc---cCCccccccC
Q 015122 38 EAVLNLVCATCG--KPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVD 99 (413)
Q Consensus 38 e~~~~~~C~~C~--~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~---p~K~---~~~~~~ldl~ 99 (413)
+.+....|..|+ +. ..+.++..+.++|++|+|+.+||..+. +.|+ +..|+.+++.
T Consensus 112 e~~~~~~~~~c~~~~~-------~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~~ 174 (255)
T cd02257 112 EILEGDNCYKCEKKKK-------QEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLS 174 (255)
T ss_pred hccCCCCcccCCCCcc-------cceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccCc
Confidence 446668899997 33 678899999999999999999999875 6776 5567777764
No 35
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=93.70 E-value=0.024 Score=55.94 Aligned_cols=40 Identities=23% Similarity=0.164 Sum_probs=35.2
Q ss_pred hhhhhcccCCCCCCCCCcccccccccccccccccc----chhccccccccc
Q 015122 38 EAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVD----KTSEAAKPISLE 84 (413)
Q Consensus 38 e~~~~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~----~L~v~~~r~~l~ 84 (413)
|.+..+.|+.|+++ ..++|++.+.+||+ +|+||.+||..+
T Consensus 130 E~~~~~~C~~C~~~-------~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~ 173 (268)
T cd02672 130 EKVTKAWCDTCCKY-------QPLEQTTSIRHLPDILLLVLVINLSVTNGE 173 (268)
T ss_pred hhcccccccccCcc-------cccEEEEEeecCCCcccceEEEEEeccChh
Confidence 44557999999987 78999999999999 999999999864
No 36
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=93.69 E-value=0.95 Score=50.56 Aligned_cols=84 Identities=35% Similarity=0.424 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHH-HHHHH
Q 015122 182 EIKLKAQELRERARKKKEEEEKRMEREREKERIRIGKELLEAKRIEEENERKRILALRKA------EKEEEKRA-REKIR 254 (413)
Q Consensus 182 Ek~~k~~el~~k~r~~r~eeek~~~~e~E~~Rr~~gKe~~~~k~~~ee~e~k~~~e~rkr------EK~e~~~a-r~ri~ 254 (413)
|+..+++|+.+.-|+.|+.+|++...+-|+. ..+.-+++|++++|.++++.-+.-++ ++.+..+. -.+-+
T Consensus 924 er~rk~qE~~E~ER~rrEaeek~rre~ee~k---~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k~q 1000 (1259)
T KOG0163|consen 924 ERLRKIQELAEAERKRREAEEKRRREEEEKK---RAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAKRQ 1000 (1259)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777766555433333332 33444567777777666654333222 11111111 11345
Q ss_pred HHHHHHHHHHHHhc
Q 015122 255 QKLEEDKAERRRRL 268 (413)
Q Consensus 255 ~qIe~Dk~eR~~k~ 268 (413)
.|+|.+|+.+.-.+
T Consensus 1001 ~~~Eqer~D~~la~ 1014 (1259)
T KOG0163|consen 1001 NQLEQERRDHELAL 1014 (1259)
T ss_pred hHHHHHHHHHHHHH
Confidence 56777777775533
No 37
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.17 E-value=0.28 Score=51.67 Aligned_cols=39 Identities=33% Similarity=0.544 Sum_probs=35.1
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015122 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152 (413)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~ 152 (413)
++.+-++.|++|||.+..|+.||+...+ +|+.|++||.+
T Consensus 302 i~d~~lsllv~mGfeesdaRlaLRsc~g-~Vd~AvqfI~e 340 (568)
T KOG2561|consen 302 INDETLSLLVGMGFEESDARLALRSCNG-DVDSAVQFIIE 340 (568)
T ss_pred ccchHHHHHHHcCCCchHHHHHHHhccc-cHHHHHHHHHH
Confidence 6778899999999999999999998776 89999999844
No 38
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=92.75 E-value=1.5 Score=51.10 Aligned_cols=10 Identities=50% Similarity=0.820 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 015122 257 LEEDKAERRR 266 (413)
Q Consensus 257 Ie~Dk~eR~~ 266 (413)
++.++.+|++
T Consensus 515 ~e~e~~e~~r 524 (1021)
T PTZ00266 515 LERDRLEKAR 524 (1021)
T ss_pred HHHHHHHHHH
Confidence 3455555544
No 39
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=92.56 E-value=0.12 Score=39.33 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=22.2
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCC
Q 015122 111 PEVDKELLKELEAMGFPVARATRALHYSGN 140 (413)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn 140 (413)
.-+|.++|+++.+|||+.+++..||+..|=
T Consensus 6 ~Gi~~~lVd~F~~mGF~~dkVvevlrrlgi 35 (55)
T PF09288_consen 6 YGIDKDLVDQFENMGFERDKVVEVLRRLGI 35 (55)
T ss_dssp ---SHHHHHHHHHHT--HHHHHHHHHHS--
T ss_pred cCCCHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 347899999999999999999999998763
No 40
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=92.15 E-value=0.056 Score=56.85 Aligned_cols=55 Identities=11% Similarity=-0.113 Sum_probs=43.9
Q ss_pred hhhcccCCCCCCCCCccccccccccccccccccchhcccccccccc--Cccc---cCCccc-cccCCC
Q 015122 40 VLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSEEA-IDVDMS 101 (413)
Q Consensus 40 ~~~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~--p~K~---~~~~~~-ldl~~~ 101 (413)
...|.|+.|... ..++|+..+...|++|+++.+||...+ ..|. |..|.. ||++.|
T Consensus 309 L~ky~~~~c~~~-------~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y 369 (440)
T cd02669 309 LKKYDGKTETEL-------KDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDY 369 (440)
T ss_pred HHhcCCccceec-------ccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhh
Confidence 445899999875 567999999999999999999999875 3444 556765 788765
No 41
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.06 E-value=2.2 Score=47.85 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHhCCCCHHHHHHHHHHhcC
Q 015122 126 FPVARATRALHYSGNANVEAAVNWVVEHEN 155 (413)
Q Consensus 126 F~~~~a~kAL~~tgn~~~E~A~~Wl~~h~d 155 (413)
.+-.+|+-||-.+|=....-|-=|-++..|
T Consensus 212 Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd 241 (1118)
T KOG1029|consen 212 LSGQQARSALGQSGLPQNQLAHIWTLSDVD 241 (1118)
T ss_pred cccHHHHHHHHhcCCchhhHhhheeeeccC
Confidence 344667777777665555666667666444
No 42
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=0.037 Score=61.07 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=46.0
Q ss_pred hcccCCCCCCCCCccccccccccccccccccchhccccccccc--c--Cccc---cCCccccccCCC
Q 015122 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLE--V--PKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 42 ~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~--~--p~K~---~~~~~~ldl~~~ 101 (413)
-|.|..|.++ +.-.|||.|+..|.+|+||.+||.++ + -.|- ...|-.||++.|
T Consensus 266 AYhCeKCdeK-------~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePY 325 (944)
T KOG1866|consen 266 AYHCEKCDEK-------VDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPY 325 (944)
T ss_pred hhhhhhhhhh-------hHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCce
Confidence 4999999987 77899999999999999999999998 2 6666 557888999866
No 43
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=91.25 E-value=2.8 Score=48.84 Aligned_cols=9 Identities=22% Similarity=0.560 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 015122 255 QKLEEDKAE 263 (413)
Q Consensus 255 ~qIe~Dk~e 263 (413)
+.+++.|++
T Consensus 518 e~~e~~rr~ 526 (1021)
T PTZ00266 518 DRLEKARRN 526 (1021)
T ss_pred HHHHHHHhh
Confidence 334444433
No 44
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=90.13 E-value=0.62 Score=33.05 Aligned_cols=37 Identities=35% Similarity=0.532 Sum_probs=30.4
Q ss_pred CHHHHHHHHhCCCCH---HHHHHHHHHhCCCCHHHHHHHHHH
Q 015122 114 DKELLKELEAMGFPV---ARATRALHYSGNANVEAAVNWVVE 152 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~---~~a~kAL~~tgn~~~E~A~~Wl~~ 152 (413)
.+..+.+|.+| ||. ..+++.|...+| +++.|++-|++
T Consensus 2 ~~~~v~~L~~m-FP~l~~~~I~~~L~~~~g-~ve~~i~~LL~ 41 (43)
T smart00546 2 NDEALHDLKDM-FPNLDEEVIKAVLEANNG-NVEATINNLLE 41 (43)
T ss_pred hHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHc
Confidence 46789999999 775 777888886665 89999999875
No 45
>COG1773 Rubredoxin [Energy production and conversion]
Probab=88.92 E-value=0.11 Score=39.66 Aligned_cols=42 Identities=19% Similarity=0.467 Sum_probs=33.4
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
+-+|.+||+|.....+...+.-.-| +-|.+. -.+..||-||-
T Consensus 3 ~~~C~~CG~vYd~e~Gdp~~gi~pg-T~fedl---Pd~w~CP~Cg~ 44 (55)
T COG1773 3 RWRCSVCGYVYDPEKGDPRCGIAPG-TPFEDL---PDDWVCPECGV 44 (55)
T ss_pred ceEecCCceEeccccCCccCCCCCC-CchhhC---CCccCCCCCCC
Confidence 5799999999988888877777444 448887 56799999983
No 46
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=88.77 E-value=5.5 Score=44.86 Aligned_cols=55 Identities=35% Similarity=0.395 Sum_probs=34.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 015122 208 EREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAE 263 (413)
Q Consensus 208 e~E~~Rr~~gKe~~~~k~~~ee~e~k~~~e~rkrEK~e~~~ar~ri~~qIe~Dk~e 263 (413)
|.|..||+.--+-..++.+++-+ ||.+-++++++++++....-.+.+|+++..++
T Consensus 941 Eaeek~rre~ee~k~~k~e~e~k-RK~eEeqr~~qee~e~~l~~e~q~qla~e~ee 995 (1259)
T KOG0163|consen 941 EAEEKRRREEEEKKRAKAEMETK-RKAEEEQRKAQEEEERRLALELQEQLAKEAEE 995 (1259)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455444433 55556677778888888888888888887766
No 47
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.42 E-value=5.1 Score=45.17 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=13.3
Q ss_pred cCHHHHHHHHhCCCCHHHH
Q 015122 113 VDKELLKELEAMGFPVARA 131 (413)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a 131 (413)
-.+.+-..|+--|.|.+.-
T Consensus 213 sg~qaR~aL~qS~Lpq~~L 231 (1118)
T KOG1029|consen 213 SGQQARSALGQSGLPQNQL 231 (1118)
T ss_pred ccHHHHHHHHhcCCchhhH
Confidence 3555677788888887654
No 48
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=87.35 E-value=0.15 Score=47.55 Aligned_cols=48 Identities=13% Similarity=0.272 Sum_probs=35.9
Q ss_pred hcccCCCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCc-cccccCCC
Q 015122 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSE-EAIDVDMS 101 (413)
Q Consensus 42 ~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~----p~K~---~~~~-~~ldl~~~ 101 (413)
.+.|..|+.. ...|.++|++|+|+.+||.+.. ..|. +.+| +.|||+.+
T Consensus 142 ~~~c~~c~~~------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~ 197 (269)
T PF00443_consen 142 SIKCSSCKNS------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPY 197 (269)
T ss_dssp EEEETTTTCE------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGG
T ss_pred cccccccccc------------ccccccccceeeeccccceeccccccccccccccccCchhhhhhhh
Confidence 5789999862 7889999999999999996653 5666 6678 79999865
No 49
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=87.25 E-value=14 Score=40.26 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=9.7
Q ss_pred cccccccccchhccc
Q 015122 64 RTGHTDFVDKTSEAA 78 (413)
Q Consensus 64 ~t~~~tfp~~L~v~~ 78 (413)
...|-+|||...+++
T Consensus 20 ~epn~~fpdl~a~~a 34 (591)
T KOG2412|consen 20 PEPNWNFPDLVAEIA 34 (591)
T ss_pred CCCCCCchhHHHHhh
Confidence 345666888776644
No 50
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=87.17 E-value=0.28 Score=42.42 Aligned_cols=46 Identities=20% Similarity=0.484 Sum_probs=30.0
Q ss_pred eeecCcccccccch------------HHHHHHHhhhccCCCCcch--hhhhhcccCCCCCC
Q 015122 5 SLKCGDCGALLRSV------------QEAQEHAELTSHSNFSEST--EAVLNLVCATCGKP 51 (413)
Q Consensus 5 ~l~C~~C~~~~~~~------------~~aq~h~~~tgh~~F~e~~--e~~~~~~C~~C~~~ 51 (413)
.++| .||..+-+- .++.+-.....-..|.... ..+.+|.||.||..
T Consensus 24 ~vkc-~CGh~f~d~r~NwK~~alv~vRd~~E~~~~iYp~~~aPdp~w~~irEyyCP~Cgt~ 83 (112)
T PF08882_consen 24 VVKC-DCGHEFCDARENWKLGALVYVRDPEEIHPEIYPFTMAPDPEWQVIREYYCPGCGTQ 83 (112)
T ss_pred eeec-cCCCeecChhcChhhCcEEEecChHHhhhhhcccccCCCCCcEEEEEEECCCCcce
Confidence 5788 899999332 3333333334555666542 46789999999974
No 51
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=87.00 E-value=1.9 Score=30.48 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=30.3
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 115 KELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVEH 153 (413)
Q Consensus 115 ~~~l~~L~~M--GF~~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (413)
++.+.+|.+| .++......+|..+++ +++.|++-|++.
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~-~ve~ai~~LL~~ 41 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNG-DVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTT-THHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCC-CHHHHHHHHHcC
Confidence 5678899998 3556888899977776 899999999874
No 52
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=86.46 E-value=2 Score=30.63 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=29.3
Q ss_pred HHHHHH-hCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 015122 117 LLKELE-AMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (413)
Q Consensus 117 ~l~~L~-~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~ 157 (413)
.|.+++ -.|.++..|..-|..+++ +++.|++-.|++.++|
T Consensus 3 ~i~~F~~iTg~~~~~A~~~L~~~~w-dle~Av~~y~~~~~~~ 43 (43)
T PF14555_consen 3 KIAQFMSITGADEDVAIQYLEANNW-DLEAAVNAYFDDGEAP 43 (43)
T ss_dssp HHHHHHHHH-SSHHHHHHHHHHTTT--HHHHHHHHHHSS-S-
T ss_pred HHHHHHHHHCcCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCC
Confidence 444444 358999999999999887 9999999999887765
No 53
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=86.14 E-value=0.18 Score=37.70 Aligned_cols=42 Identities=19% Similarity=0.491 Sum_probs=27.6
Q ss_pred eecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
-+|.+||++-....+-..+.-..| +.|.+. -.+++||.||.+
T Consensus 2 y~C~~CgyiYd~~~Gd~~~~i~pG-t~f~~L---p~~w~CP~C~a~ 43 (50)
T cd00730 2 YECRICGYIYDPAEGDPDEGIPPG-TPFEDL---PDDWVCPVCGAG 43 (50)
T ss_pred cCCCCCCeEECCCCCCcccCcCCC-CCHhHC---CCCCCCCCCCCc
Confidence 589999999976655433333233 235544 457999999864
No 54
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=84.37 E-value=0.29 Score=53.55 Aligned_cols=53 Identities=11% Similarity=0.040 Sum_probs=43.9
Q ss_pred hcccCCCCCCCCCccccccccccccccccccchhcccccccccc--Cccc---cC-CccccccCCC
Q 015122 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---AD-SEEAIDVDMS 101 (413)
Q Consensus 42 ~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~--p~K~---~~-~~~~ldl~~~ 101 (413)
...||+|... -.|+|+.-+-..|++|+|+.+||.-++ +.|. |+ +=+.|||+.+
T Consensus 695 swyCpgCkef-------rqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~ 753 (823)
T COG5560 695 SWYCPGCKEF-------RQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGV 753 (823)
T ss_pred cccCCchHhh-------hhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhccccccccccce
Confidence 4799999764 789999999999999999999999987 8888 44 3356777744
No 55
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=83.49 E-value=8.6 Score=43.51 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhHHHH
Q 015122 187 AQELRERARKKKEEEE 202 (413)
Q Consensus 187 ~~el~~k~r~~r~eee 202 (413)
+.+|++.+.+.++++|
T Consensus 216 v~~~qe~La~~qe~eE 231 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEE 231 (1064)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455554444444333
No 56
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=83.47 E-value=2.8 Score=30.51 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=23.8
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHh---CCCCHHH
Q 015122 114 DKELLKELEAMGFPVARATRALHYS---GNANVEA 145 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~~~a~kAL~~t---gn~~~E~ 145 (413)
-+++++.|+++||++..+.+|+... .+.+++.
T Consensus 3 ~~d~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~ 37 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQKAVSKLLEKPGMDVEE 37 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHH
Confidence 4678999999999999999998776 2345554
No 57
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=82.25 E-value=0.32 Score=53.79 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=31.3
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhcccccccccc
Q 015122 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV 85 (413)
Q Consensus 43 ~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~ 85 (413)
+.||.|+.+..+. .+|+.-|-.||++|+++.+||..+.
T Consensus 518 w~Cp~c~~~~~~~-----~lK~~~i~~lp~iLiihL~Rf~~~~ 555 (653)
T KOG1868|consen 518 WLCPRCKHKESSK-----TLKKLTILRLPKILIIHLKRFSSDG 555 (653)
T ss_pred cCCccccCccccc-----ccceeeeecCCHHHHHHHHHhccCc
Confidence 7999999862111 1599999999999999999999994
No 58
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=82.25 E-value=0.52 Score=46.01 Aligned_cols=42 Identities=7% Similarity=-0.156 Sum_probs=34.9
Q ss_pred cccccccccccccchhcccccccccc--Cccc---cCCccccccCCC
Q 015122 60 LHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 60 ~~~K~t~~~tfp~~L~v~~~r~~l~~--p~K~---~~~~~~ldl~~~ 101 (413)
.+.+...|..+|++|+|+.+||.... +.|+ |..|..|||+.|
T Consensus 88 ~~~~~e~i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP~~Ldl~~~ 134 (241)
T cd02670 88 QYFNNSVFAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDF 134 (241)
T ss_pred HHhchhhhhhCCCeEEEEEEccccCCCcceeCCcEECCCCcCCchhh
Confidence 34444459999999999999999975 7888 778999999876
No 59
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=81.97 E-value=0.46 Score=35.08 Aligned_cols=42 Identities=21% Similarity=0.504 Sum_probs=24.0
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
+-+|.+||.+-....+=-.+.- .--+-|.+. -.+++||.|+.
T Consensus 1 ky~C~~CgyvYd~~~Gd~~~~i-~pGt~F~~L---p~~w~CP~C~a 42 (47)
T PF00301_consen 1 KYQCPVCGYVYDPEKGDPENGI-PPGTPFEDL---PDDWVCPVCGA 42 (47)
T ss_dssp EEEETTTSBEEETTTBBGGGTB--TT--GGGS----TT-B-TTTSS
T ss_pred CcCCCCCCEEEcCCcCCcccCc-CCCCCHHHC---CCCCcCcCCCC
Confidence 4689999999966554322222 123456665 45699999985
No 60
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.78 E-value=1.5 Score=41.30 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=32.8
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015122 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152 (413)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~ 152 (413)
.+...++.|.+|||+++.+..+|...+- +++.|.+.+++
T Consensus 161 ~~~~~v~~l~~mGf~~~~~i~~L~~~~w-~~~~a~~~~~s 199 (200)
T KOG0418|consen 161 WDKKKVDSLIEMGFSELEAILVLSGSDW-NLADATEQLLS 199 (200)
T ss_pred hhHHHHHHHHHhcccHHHHHHHhhcccc-chhhhhHhhcc
Confidence 4778899999999999999999976654 78888877764
No 61
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=80.81 E-value=0.35 Score=39.01 Aligned_cols=65 Identities=22% Similarity=0.430 Sum_probs=23.9
Q ss_pred ecCcccccccchHHHHHHHhhhccC-CCCcc-------------hhhhhh-cccCCCCCCCCCccccccccccccccccc
Q 015122 7 KCGDCGALLRSVQEAQEHAELTSHS-NFSES-------------TEAVLN-LVCATCGKPCRSKTETDLHRKRTGHTDFV 71 (413)
Q Consensus 7 ~C~~C~~~~~~~~~aq~h~~~tgh~-~F~e~-------------~e~~~~-~~C~~C~~~~~~~~e~~~~~K~t~~~tfp 71 (413)
+|..|+..+.+...-..|.. .-|. ++... ...+.+ +.|+.|++.+++......|..+.+|..+.
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~-~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~ 79 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMK-KKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSKHHKKRN 79 (100)
T ss_dssp -------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTTTTC-S
T ss_pred Cccccccccccccccccccc-cccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCccCCCcc
Confidence 69999999999999999987 5554 33321 123334 99999999988888888888888887754
Q ss_pred c
Q 015122 72 D 72 (413)
Q Consensus 72 ~ 72 (413)
.
T Consensus 80 ~ 80 (100)
T PF12756_consen 80 S 80 (100)
T ss_dssp -
T ss_pred c
Confidence 3
No 62
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=79.47 E-value=1.1 Score=30.35 Aligned_cols=25 Identities=32% Similarity=0.821 Sum_probs=19.1
Q ss_pred eecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
-+|.+||.+..+.. .+..||.||.+
T Consensus 2 ~~C~~CGy~y~~~~---------------------~~~~CP~Cg~~ 26 (33)
T cd00350 2 YVCPVCGYIYDGEE---------------------APWVCPVCGAP 26 (33)
T ss_pred EECCCCCCEECCCc---------------------CCCcCcCCCCc
Confidence 47999998876543 45799999974
No 63
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=78.96 E-value=78 Score=35.52 Aligned_cols=9 Identities=0% Similarity=-0.038 Sum_probs=3.4
Q ss_pred HHHHHHHhH
Q 015122 235 ILALRKAEK 243 (413)
Q Consensus 235 ~~e~rkrEK 243 (413)
+.+++||.+
T Consensus 313 EkeEKrrKd 321 (811)
T KOG4364|consen 313 EKEEKRRKD 321 (811)
T ss_pred HHHHHhhhh
Confidence 333333333
No 64
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=78.53 E-value=0.99 Score=40.28 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=26.9
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhh-hhcccCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAV-LNLVCATCGKP 51 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~-~~~~C~~C~~~ 51 (413)
.+..|.+||.........+++.. +-++.+.=..+.. ..+.||.||+.
T Consensus 69 ~~~~C~~CG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~CP~Cgs~ 116 (135)
T PRK03824 69 AVLKCRNCGNEWSLKEVKESLDE-EIREAIHFIPEVVHAFLKCPKCGSR 116 (135)
T ss_pred eEEECCCCCCEEecccccccccc-cccccccccccccccCcCCcCCCCC
Confidence 57899999988765533333322 3333333222222 23679999974
No 65
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=78.22 E-value=3.9 Score=38.91 Aligned_cols=41 Identities=27% Similarity=0.519 Sum_probs=35.6
Q ss_pred cCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 015122 113 VDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (413)
Q Consensus 113 ~~~~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (413)
++..++..|-+ -|.+.-.|++||..++| |++.|++||-...
T Consensus 3 i~a~~ik~LR~~tga~~~~ck~AL~~~~g-d~~~A~~~lr~~g 44 (198)
T PRK12332 3 ITAKLVKELREKTGAGMMDCKKALEEANG-DMEKAIEWLREKG 44 (198)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHcCC-CHHHHHHHHHHhh
Confidence 56778888874 59999999999999998 9999999998764
No 66
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=76.81 E-value=60 Score=29.97 Aligned_cols=6 Identities=33% Similarity=0.623 Sum_probs=3.3
Q ss_pred CCCHHH
Q 015122 177 SLTPEE 182 (413)
Q Consensus 177 ~lT~eE 182 (413)
+|+|.+
T Consensus 40 llDpa~ 45 (157)
T PF15236_consen 40 LLDPAQ 45 (157)
T ss_pred cCCHHH
Confidence 555554
No 67
>PRK09377 tsf elongation factor Ts; Provisional
Probab=76.16 E-value=5 Score=40.42 Aligned_cols=41 Identities=24% Similarity=0.494 Sum_probs=36.1
Q ss_pred cCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 015122 113 VDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (413)
Q Consensus 113 ~~~~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (413)
++..++..|-+ -|.+.--|++||..++| |++.|++||-.+.
T Consensus 4 is~~~IK~LR~~Tgagm~dCKkAL~e~~g-D~ekAi~~Lrk~G 45 (290)
T PRK09377 4 ITAALVKELRERTGAGMMDCKKALTEADG-DIEKAIEWLRKKG 45 (290)
T ss_pred cCHHHHHHHHHHHCCCHHHHHHHHHHcCC-CHHHHHHHHHHhc
Confidence 56778888874 59999999999999998 9999999998864
No 68
>PHA02768 hypothetical protein; Provisional
Probab=75.83 E-value=2.6 Score=32.19 Aligned_cols=39 Identities=23% Similarity=0.434 Sum_probs=30.8
Q ss_pred CCceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 2 ~~~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
+-+--+|..||..+.-...=+.|.. + |. ..|+|+.|++.
T Consensus 2 ~~~~y~C~~CGK~Fs~~~~L~~H~r-~-H~---------k~~kc~~C~k~ 40 (55)
T PHA02768 2 ALLGYECPICGEIYIKRKSMITHLR-K-HN---------TNLKLSNCKRI 40 (55)
T ss_pred cccccCcchhCCeeccHHHHHHHHH-h-cC---------CcccCCcccce
Confidence 3334489999999998888899988 4 66 14799999984
No 69
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=75.75 E-value=2.6 Score=36.72 Aligned_cols=12 Identities=42% Similarity=0.991 Sum_probs=9.3
Q ss_pred hhhcccCCCCCC
Q 015122 40 VLNLVCATCGKP 51 (413)
Q Consensus 40 ~~~~~C~~C~~~ 51 (413)
|..+.|++|+..
T Consensus 10 vt~l~C~~C~t~ 21 (113)
T PF09862_consen 10 VTRLKCPSCGTE 21 (113)
T ss_pred EEEEEcCCCCCE
Confidence 556899999864
No 70
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=75.45 E-value=5.4 Score=40.20 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=36.0
Q ss_pred cCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 015122 113 VDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (413)
Q Consensus 113 ~~~~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (413)
++..++..|-+ -|.+.-.|++||..++| |++.|++||-.+.
T Consensus 3 isa~~IK~LRe~Tgagm~dCKkAL~e~~g-DiekAi~~LRkkG 44 (290)
T TIGR00116 3 ITAQLVKELRERTGAGMMDCKKALTEANG-DFEKAIKNLRESG 44 (290)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHcCC-CHHHHHHHHHHhc
Confidence 56778888875 59999999999999998 9999999998864
No 71
>PTZ00121 MAEBL; Provisional
Probab=72.89 E-value=51 Score=40.10 Aligned_cols=6 Identities=17% Similarity=0.368 Sum_probs=3.0
Q ss_pred CCCCCC
Q 015122 46 ATCGKP 51 (413)
Q Consensus 46 ~~C~~~ 51 (413)
|.|..|
T Consensus 881 p~Cf~p 886 (2084)
T PTZ00121 881 PNCQII 886 (2084)
T ss_pred Cccccc
Confidence 555543
No 72
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=71.76 E-value=18 Score=36.61 Aligned_cols=8 Identities=13% Similarity=0.156 Sum_probs=3.9
Q ss_pred ccchhccc
Q 015122 71 VDKTSEAA 78 (413)
Q Consensus 71 p~~L~v~~ 78 (413)
+|++.|-+
T Consensus 110 ~D~v~i~i 117 (321)
T PF07946_consen 110 KDRVTIEI 117 (321)
T ss_pred CCeEEEEE
Confidence 55554433
No 73
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=71.26 E-value=1.9 Score=33.61 Aligned_cols=28 Identities=39% Similarity=0.841 Sum_probs=14.6
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
..|.||+|+. ++.+.|. ++..+|+.||+
T Consensus 29 v~IlCNDC~~--------------~s~v~fH-----~lg~KC~~C~S 56 (61)
T PF14599_consen 29 VWILCNDCNA--------------KSEVPFH-----FLGHKCSHCGS 56 (61)
T ss_dssp EEEEESSS----------------EEEEE-------TT----TTTS-
T ss_pred EEEECCCCCC--------------ccceeee-----HhhhcCCCCCC
Confidence 4688999986 5566666 45689999996
No 74
>CHL00098 tsf elongation factor Ts
Probab=71.15 E-value=8.3 Score=36.81 Aligned_cols=38 Identities=26% Similarity=0.367 Sum_probs=32.2
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 015122 116 ELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (413)
Q Consensus 116 ~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (413)
.++..|-+ -|.+.--|++||..++| |++.|++||-.+.
T Consensus 3 ~~ik~LR~~Tgag~~dck~AL~e~~g-d~~~A~~~Lr~~g 41 (200)
T CHL00098 3 ELVKELRDKTGAGMMDCKKALQEANG-DFEKALESLRQKG 41 (200)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCC-CHHHHHHHHHHhh
Confidence 45666653 58999999999999998 9999999998864
No 75
>PHA00732 hypothetical protein
Probab=71.00 E-value=4.6 Score=32.88 Aligned_cols=35 Identities=29% Similarity=0.582 Sum_probs=28.9
Q ss_pred ecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 7 KCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 7 ~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
+|..||..+.....-+.|.. +.|.. +.|+.||+.+
T Consensus 3 ~C~~Cgk~F~s~s~Lk~H~r-~~H~~----------~~C~~CgKsF 37 (79)
T PHA00732 3 KCPICGFTTVTLFALKQHAR-RNHTL----------TKCPVCNKSY 37 (79)
T ss_pred cCCCCCCccCCHHHHHHHhh-cccCC----------CccCCCCCEe
Confidence 69999999999999999987 44653 3799999864
No 76
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=70.88 E-value=1.5 Score=42.55 Aligned_cols=38 Identities=8% Similarity=0.055 Sum_probs=29.8
Q ss_pred cccccccccccccchhcccccccccc--Cccc---cCCccccc
Q 015122 60 LHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSEEAID 97 (413)
Q Consensus 60 ~~~K~t~~~tfp~~L~v~~~r~~l~~--p~K~---~~~~~~ld 97 (413)
.++|+..|..+|++|+++.+||.+.. ..|+ +..|..|+
T Consensus 118 ~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l~ 160 (228)
T cd02665 118 KSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQIIQ 160 (228)
T ss_pred hhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCccC
Confidence 46788889999999999999999974 6666 44565543
No 77
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=70.55 E-value=3.5 Score=37.08 Aligned_cols=37 Identities=22% Similarity=0.541 Sum_probs=24.8
Q ss_pred CCceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 2 ~~~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
+.....|..||.... ..+|..+.. .. ..|.||.||..
T Consensus 96 ~~~~Y~Cp~C~~~y~-~~ea~~~~d------~~------~~f~Cp~Cg~~ 132 (147)
T smart00531 96 NNAYYKCPNCQSKYT-FLEANQLLD------MD------GTFTCPRCGEE 132 (147)
T ss_pred CCcEEECcCCCCEee-HHHHHHhcC------CC------CcEECCCCCCE
Confidence 356788999997776 445555433 11 23899999975
No 78
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=70.14 E-value=2.3 Score=32.72 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=30.8
Q ss_pred eeecCcccccccc---hHHHHHHHhhhccCCCCcchhhhhhcccCCCCC
Q 015122 5 SLKCGDCGALLRS---VQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 5 ~l~C~~C~~~~~~---~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
..-|..||.++=| ..-|+.|++.+||..|-... .....|-.|+.
T Consensus 11 lw~CL~Cg~~~C~~~~~~Ha~~H~~~~~H~l~v~~~--~~~i~C~~C~~ 57 (63)
T PF02148_consen 11 LWLCLTCGYVGCGRYSNGHALKHYKETGHPLAVSLS--TGSIWCYACDD 57 (63)
T ss_dssp EEEETTTS-EEETTTSTSHHHHHHHHHT--EEEETT--TTCEEETTTTE
T ss_pred eEEeCCCCcccccCCcCcHHHHhhcccCCeEEEECC--CCeEEEcCCCc
Confidence 4569999999955 46799999999999998763 22357777763
No 79
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=70.11 E-value=6 Score=42.36 Aligned_cols=37 Identities=30% Similarity=0.487 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHhCCCCHHHHHHHHHH
Q 015122 115 KELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVE 152 (413)
Q Consensus 115 ~~~l~~L~~MGF~-~~~a~kAL~~tgn~~~E~A~~Wl~~ 152 (413)
+.-++||.+|||. +++...||.+||+ ++.+|++-|+.
T Consensus 455 q~QLeQL~~MGF~nre~nlqAL~atgG-di~aAverll~ 492 (493)
T KOG0010|consen 455 QTQLEQLNDMGFLDREANLQALRATGG-DINAAVERLLG 492 (493)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHhcC-cHHHHHHHHhc
Confidence 3458999999985 6888999999998 99999998763
No 80
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=69.58 E-value=12 Score=37.89 Aligned_cols=8 Identities=38% Similarity=0.347 Sum_probs=3.8
Q ss_pred hccCCCCc
Q 015122 28 TSHSNFSE 35 (413)
Q Consensus 28 tgh~~F~e 35 (413)
.-+.+|+-
T Consensus 42 ~L~~~Fa~ 49 (321)
T PF07946_consen 42 LLESNFAL 49 (321)
T ss_pred HHHhhccc
Confidence 44455544
No 81
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=69.43 E-value=95 Score=28.69 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=8.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 015122 236 LALRKAEKEEEKRAREKIRQKL 257 (413)
Q Consensus 236 ~e~rkrEK~e~~~ar~ri~~qI 257 (413)
+..++-+..-+...++...++.
T Consensus 116 ~~~~k~~~l~e~~q~Aqe~A~~ 137 (157)
T PF15236_consen 116 EQTRKTQELYEAMQRAQEEAQR 137 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 82
>KOG2699 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.20 E-value=2.7 Score=43.99 Aligned_cols=62 Identities=27% Similarity=0.275 Sum_probs=49.1
Q ss_pred HHHHHhhhhcCCchHHHHHHHHHHHHHHhhhccCCCccccccccccchhhhhhccCcccHHHHHHHc
Q 015122 305 ECLRSLKQNHKDDDAKVKRAFQTLLTYIGNVAKNPNEEKFRKIRLSNQTFQDRVGALKGGLEFLELC 371 (413)
Q Consensus 305 ~~L~slk~~~~~s~a~~~~a~~tL~~~l~Ni~~~P~e~KfRrIr~~N~~f~~kV~~~~ga~e~L~a~ 371 (413)
..+..+..++... .-...+.++..++..|+..||..+|||.+ ++|..++++| -|+.+.|.++
T Consensus 153 ss~~~~~~~~k~~-e~se~~~d~~~kqe~~~~~~pE~ek~R~r-l~~el~~~~v---~g~he~le~v 214 (407)
T KOG2699|consen 153 SSLTKIFVNTKAK-ELSESGRDIRQKQEQNTERNPEREKERKR-LGNELLKEKV---LGCHEPLEAV 214 (407)
T ss_pred hhhhhccccccch-hhhhhhhhhHHHhhhhhccchhhhhhhhc-cccchhhccc---ccccchHHHH
Confidence 3444444444432 24678999999999999999999999999 9999999999 5777777776
No 83
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=68.15 E-value=12 Score=32.80 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=35.9
Q ss_pred cccCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015122 111 PEVDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVE 152 (413)
Q Consensus 111 ~~~~~~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~ 152 (413)
..++++.++.+++ -|-|++.|++||..++| ++-.|+-||.+
T Consensus 73 ~~i~~edI~lv~~q~gvs~~~A~~AL~~~~g-Dl~~AI~~L~~ 114 (115)
T PRK06369 73 VEIPEEDIELVAEQTGVSEEEARKALEEANG-DLAEAILKLSS 114 (115)
T ss_pred CCCCHHHHHHHHHHHCcCHHHHHHHHHHcCC-cHHHHHHHHhc
Confidence 5688888988874 79999999999999988 89999999865
No 84
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=67.98 E-value=1.2e+02 Score=32.40 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=24.2
Q ss_pred eecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
|.|..||+.---.=+=+...--||.+.=+........|.|.+||++
T Consensus 147 i~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~ 192 (446)
T PF07227_consen 147 IGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKT 192 (446)
T ss_pred EeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCCh
Confidence 5677777654221111111112444444444333456999999985
No 85
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=67.61 E-value=3 Score=36.10 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=17.8
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
.+.+|..||..+.-. ...+.||.||+.
T Consensus 69 ~~~~C~~Cg~~~~~~---------------------~~~~~CP~Cgs~ 95 (113)
T PRK12380 69 AQAWCWDCSQVVEIH---------------------QHDAQCPHCHGE 95 (113)
T ss_pred cEEEcccCCCEEecC---------------------CcCccCcCCCCC
Confidence 467899998543211 134679999975
No 86
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=63.67 E-value=3.8 Score=35.55 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=18.3
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
.+.+|.+||....-.. ..+.||.||+.
T Consensus 69 ~~~~C~~Cg~~~~~~~---------------------~~~~CP~Cgs~ 95 (115)
T TIGR00100 69 VECECEDCSEEVSPEI---------------------DLYRCPKCHGI 95 (115)
T ss_pred cEEEcccCCCEEecCC---------------------cCccCcCCcCC
Confidence 4678999986543210 13689999975
No 87
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=63.44 E-value=5.3 Score=27.76 Aligned_cols=30 Identities=30% Similarity=0.748 Sum_probs=22.1
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
|..|..||.+. |..|... ..+-.|+.||..
T Consensus 1 Rr~C~~Cg~~Y--------------h~~~~pP---~~~~~Cd~cg~~ 30 (36)
T PF05191_consen 1 RRICPKCGRIY--------------HIEFNPP---KVEGVCDNCGGE 30 (36)
T ss_dssp EEEETTTTEEE--------------ETTTB-----SSTTBCTTTTEB
T ss_pred CcCcCCCCCcc--------------ccccCCC---CCCCccCCCCCe
Confidence 56788999866 7888876 566799999963
No 88
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=62.69 E-value=4.3 Score=35.16 Aligned_cols=10 Identities=20% Similarity=0.544 Sum_probs=8.0
Q ss_pred ceeecCcccc
Q 015122 4 VSLKCGDCGA 13 (413)
Q Consensus 4 ~~l~C~~C~~ 13 (413)
.+.+|.+||.
T Consensus 69 ~~~~C~~Cg~ 78 (114)
T PRK03681 69 AECWCETCQQ 78 (114)
T ss_pred cEEEcccCCC
Confidence 4678999985
No 89
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=60.76 E-value=2.1 Score=40.59 Aligned_cols=38 Identities=24% Similarity=0.566 Sum_probs=25.1
Q ss_pred eecCcccccccchHHHHHHHhhhc-cCCCCcchhhhhhcccCCCCCC
Q 015122 6 LKCGDCGALLRSVQEAQEHAELTS-HSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~~tg-h~~F~e~~e~~~~~~C~~C~~~ 51 (413)
|.|.+||..+....- .|- =-+|+++- +.-|.|++||-+
T Consensus 1 ~~Cp~C~~~~~~~~~------~~~~IP~F~evi--i~sf~C~~CGyr 39 (192)
T TIGR00310 1 IDCPSCGGECETVMK------TVNDIPYFGEVL--ETSTICEHCGYR 39 (192)
T ss_pred CcCCCCCCCCEEEEE------EEcCCCCcceEE--EEEEECCCCCCc
Confidence 579999975433222 122 35699982 446999999975
No 90
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=60.75 E-value=6.7 Score=27.91 Aligned_cols=34 Identities=26% Similarity=0.582 Sum_probs=22.1
Q ss_pred CCCceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCC
Q 015122 1 MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 1 ~~~~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
|.-+..+|..||..+.- ...+++ .....||.||.
T Consensus 1 MP~Yey~C~~Cg~~fe~------------~~~~~~----~~~~~CP~Cg~ 34 (42)
T PF09723_consen 1 MPIYEYRCEECGHEFEV------------LQSISE----DDPVPCPECGS 34 (42)
T ss_pred CCCEEEEeCCCCCEEEE------------EEEcCC----CCCCcCCCCCC
Confidence 44577899999987732 222333 23368999997
No 91
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=60.71 E-value=7.1 Score=26.85 Aligned_cols=16 Identities=31% Similarity=0.744 Sum_probs=12.4
Q ss_pred CCCceeecCccccccc
Q 015122 1 MAGVSLKCGDCGALLR 16 (413)
Q Consensus 1 ~~~~~l~C~~C~~~~~ 16 (413)
|.-+..+|..||..+.
T Consensus 1 Mp~Y~y~C~~Cg~~fe 16 (41)
T smart00834 1 MPIYEYRCEDCGHTFE 16 (41)
T ss_pred CCCEEEEcCCCCCEEE
Confidence 4457789999998774
No 92
>PF14353 CpXC: CpXC protein
Probab=60.63 E-value=5 Score=34.88 Aligned_cols=12 Identities=25% Similarity=1.057 Sum_probs=9.8
Q ss_pred hhhcccCCCCCC
Q 015122 40 VLNLVCATCGKP 51 (413)
Q Consensus 40 ~~~~~C~~C~~~ 51 (413)
.-.++||+||..
T Consensus 36 l~~~~CP~Cg~~ 47 (128)
T PF14353_consen 36 LFSFTCPSCGHK 47 (128)
T ss_pred cCEEECCCCCCc
Confidence 446899999986
No 93
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=60.25 E-value=96 Score=35.63 Aligned_cols=9 Identities=33% Similarity=0.549 Sum_probs=3.6
Q ss_pred cCCCccccc
Q 015122 337 KNPNEEKFR 345 (413)
Q Consensus 337 ~~P~e~KfR 345 (413)
.+++.+++|
T Consensus 466 ~~~~~~~lR 474 (1064)
T KOG1144|consen 466 ANESTENLR 474 (1064)
T ss_pred ccccchhcC
Confidence 333444444
No 94
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=59.90 E-value=13 Score=30.43 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=31.3
Q ss_pred HHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 015122 119 KELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (413)
Q Consensus 119 ~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (413)
..+.+.||+...+..||++|.+ ++..|..++..+...
T Consensus 2 ~~~~~~g~~~~~v~~aL~~tSg-d~~~a~~~vl~~l~~ 38 (87)
T PF11626_consen 2 KHYEELGYSREFVTHALYATSG-DPELARRFVLNFLQA 38 (87)
T ss_dssp HHHHHHTB-HHHHHHHHHHTTT-BHHHHHHHHHHCHCH
T ss_pred chHHHhCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHc
Confidence 3477899999999999999998 899999999888543
No 95
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=58.68 E-value=7.1 Score=28.11 Aligned_cols=28 Identities=29% Similarity=0.628 Sum_probs=18.9
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
..+|..||..+.- .+. ...++||.||.+
T Consensus 3 ~y~C~~CG~~~~~----------------~~~---~~~~~Cp~CG~~ 30 (46)
T PRK00398 3 EYKCARCGREVEL----------------DEY---GTGVRCPYCGYR 30 (46)
T ss_pred EEECCCCCCEEEE----------------CCC---CCceECCCCCCe
Confidence 4689999876532 222 125799999986
No 96
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=57.90 E-value=8.1 Score=23.15 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=17.8
Q ss_pred ecCcccccccchHHHHHHHh
Q 015122 7 KCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 7 ~C~~C~~~~~~~~~aq~h~~ 26 (413)
+|..||..+.....=+.|..
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~ 21 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMR 21 (23)
T ss_dssp EETTTTEEESSHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHh
Confidence 69999999999999888876
No 97
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=57.84 E-value=2.2e+02 Score=32.60 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=21.6
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCC
Q 015122 114 DKELLKELEAMGFPVARATRALHYSGN 140 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~~~a~kAL~~tgn 140 (413)
...++....-+|||.....+|-...+.
T Consensus 487 ~S~a~~iA~~~Glp~~ii~~A~~~~~~ 513 (782)
T PRK00409 487 KSNAFEIAKRLGLPENIIEEAKKLIGE 513 (782)
T ss_pred CcHHHHHHHHhCcCHHHHHHHHHHHhh
Confidence 457888888999999999988766543
No 98
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=57.38 E-value=80 Score=34.40 Aligned_cols=38 Identities=42% Similarity=0.501 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015122 221 LEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLE 258 (413)
Q Consensus 221 ~~~k~~~ee~e~k~~~e~rkrEK~e~~~ar~ri~~qIe 258 (413)
+++.-++...|..|.+++-|.-|+|+..-|+=||+..+
T Consensus 414 leae~e~kreearrkaeeer~~keee~arrefirqey~ 451 (708)
T KOG3654|consen 414 LEAEKEQKREEARRKAEEERAPKEEEVARREFIRQEYE 451 (708)
T ss_pred HHHHHHHHHHHHHHhhHhhhcchhhhhhHHHHHHHHHH
Confidence 34444445555566667777778888888877777653
No 99
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=57.08 E-value=4 Score=48.10 Aligned_cols=68 Identities=13% Similarity=-0.050 Sum_probs=51.3
Q ss_pred hhccCCCCcchhhhhhcccCCCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccC
Q 015122 27 LTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVD 99 (413)
Q Consensus 27 ~tgh~~F~e~~e~~~~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~ 99 (413)
..-|.+|+..+-.-.+-.|..|... ..+.|-..|.+||.+|.++..||.++. +.|+ ...|..||++
T Consensus 322 ~sf~~y~~~E~l~gdn~~~~~~~~~-------~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d 394 (1093)
T KOG1863|consen 322 DSLHLYFEAEILLGDNKYDAECHGL-------QDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMD 394 (1093)
T ss_pred HHHHHhhhHHHhcCCccccccccch-------hhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccc
Confidence 3778888854322222378899764 577888999999999999999999973 8887 3368888887
Q ss_pred CC
Q 015122 100 MS 101 (413)
Q Consensus 100 ~~ 101 (413)
.+
T Consensus 395 ~~ 396 (1093)
T KOG1863|consen 395 RY 396 (1093)
T ss_pred hh
Confidence 65
No 100
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=56.64 E-value=8.5 Score=28.12 Aligned_cols=16 Identities=25% Similarity=0.615 Sum_probs=12.7
Q ss_pred CCCceeecCccccccc
Q 015122 1 MAGVSLKCGDCGALLR 16 (413)
Q Consensus 1 ~~~~~l~C~~C~~~~~ 16 (413)
|--+..+|.+||..+.
T Consensus 1 MP~Yey~C~~Cg~~fe 16 (52)
T TIGR02605 1 MPIYEYRCTACGHRFE 16 (52)
T ss_pred CCCEEEEeCCCCCEeE
Confidence 4457889999998775
No 101
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=56.31 E-value=9.8 Score=34.76 Aligned_cols=30 Identities=30% Similarity=0.577 Sum_probs=20.3
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
.--.|..|+ ......+|.+ .+|.||.||..
T Consensus 108 ~~Y~Cp~c~-~r~tf~eA~~-----------------~~F~Cp~Cg~~ 137 (158)
T TIGR00373 108 MFFICPNMC-VRFTFNEAME-----------------LNFTCPRCGAM 137 (158)
T ss_pred CeEECCCCC-cEeeHHHHHH-----------------cCCcCCCCCCE
Confidence 345688888 4455555553 26999999974
No 102
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=56.24 E-value=5.9 Score=34.48 Aligned_cols=13 Identities=38% Similarity=0.966 Sum_probs=9.3
Q ss_pred CceeecCcccccc
Q 015122 3 GVSLKCGDCGALL 15 (413)
Q Consensus 3 ~~~l~C~~C~~~~ 15 (413)
..+..|..||..+
T Consensus 69 p~~~~C~~Cg~~~ 81 (117)
T PRK00564 69 KVELECKDCSHVF 81 (117)
T ss_pred CCEEEhhhCCCcc
Confidence 3568899998543
No 103
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=55.74 E-value=2.5 Score=48.33 Aligned_cols=53 Identities=9% Similarity=0.104 Sum_probs=43.1
Q ss_pred hcccCCCCCCCCCccccccccccccccccccchhcccccccccc--Cccc---cC-CccccccCCC
Q 015122 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---AD-SEEAIDVDMS 101 (413)
Q Consensus 42 ~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~--p~K~---~~-~~~~ldl~~~ 101 (413)
...||.|.+. ..|+|+.-.-..|++|||+.+||.+.+ .-|+ ++ ++..||++.|
T Consensus 716 ~w~C~~Cke~-------~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~ 774 (842)
T KOG1870|consen 716 RWYCPQCKEL-------RQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEF 774 (842)
T ss_pred cccChHHHHH-------HHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchh
Confidence 4899999875 789999999999999999999999997 4444 33 4667887766
No 104
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=55.70 E-value=5.2 Score=25.58 Aligned_cols=11 Identities=27% Similarity=0.857 Sum_probs=8.9
Q ss_pred hhhcccCCCCC
Q 015122 40 VLNLVCATCGK 50 (413)
Q Consensus 40 ~~~~~C~~C~~ 50 (413)
.+.|.||.||+
T Consensus 14 ~v~f~CPnCG~ 24 (24)
T PF07754_consen 14 AVPFPCPNCGF 24 (24)
T ss_pred CceEeCCCCCC
Confidence 45699999995
No 105
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=54.11 E-value=13 Score=29.60 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=26.4
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcc
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSES 36 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~ 36 (413)
.+.|..|+..+.+...-+.|....||..+...
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~~ 81 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNSE 81 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTTTTC-S--
T ss_pred CCCCCccCCCCcCHHHHHHHHcCccCCCcccc
Confidence 48999999999999999999999999998653
No 106
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=54.04 E-value=28 Score=30.62 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=34.2
Q ss_pred ccCHHHHHHHH-hCCCCHHHHHHHHHHhCCCCHHHHHHHHH
Q 015122 112 EVDKELLKELE-AMGFPVARATRALHYSGNANVEAAVNWVV 151 (413)
Q Consensus 112 ~~~~~~l~~L~-~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~ 151 (413)
.++++.++.++ .-|-|+..|++||..++| ++-.|+-||.
T Consensus 76 ~i~~eDI~lV~eq~gvs~e~A~~AL~~~~g-Dl~~AI~~L~ 115 (116)
T TIGR00264 76 EITEDDIELVMKQCNVSKEEARRALEECGG-DLAEAIMKLE 115 (116)
T ss_pred CCCHHHHHHHHHHhCcCHHHHHHHHHHcCC-CHHHHHHHhh
Confidence 58888888887 479999999999999988 8999998874
No 107
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=53.90 E-value=2e+02 Score=27.29 Aligned_cols=15 Identities=13% Similarity=-0.024 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 015122 181 EEIKLKAQELRERAR 195 (413)
Q Consensus 181 eEk~~k~~el~~k~r 195 (413)
++|...+..-...+.
T Consensus 78 ~~R~~~I~~~L~~Ae 92 (205)
T PRK06231 78 NKRKELIEAEINQAN 92 (205)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 108
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=53.79 E-value=3.1e+02 Score=29.37 Aligned_cols=13 Identities=0% Similarity=-0.128 Sum_probs=5.8
Q ss_pred HHhhhccCCCCcc
Q 015122 24 HAELTSHSNFSES 36 (413)
Q Consensus 24 h~~~tgh~~F~e~ 36 (413)
+-+.-|-+-|.+|
T Consensus 94 LyKe~ginP~~gc 106 (429)
T PRK00247 94 LNKEYGYNPLAGC 106 (429)
T ss_pred HHHHcCCCchHHH
Confidence 3333444445554
No 109
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=53.58 E-value=7.2 Score=29.38 Aligned_cols=29 Identities=28% Similarity=0.783 Sum_probs=19.5
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
.++|..|+..|- . .|.+. .++.+||-||.
T Consensus 4 eiRC~~CnklLa---------~-~g~~~-------~leIKCpRC~t 32 (51)
T PF10122_consen 4 EIRCGHCNKLLA---------K-AGEVI-------ELEIKCPRCKT 32 (51)
T ss_pred ceeccchhHHHh---------h-hcCcc-------EEEEECCCCCc
Confidence 478999998763 2 12222 24569999997
No 110
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=53.31 E-value=7.9 Score=27.90 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=23.4
Q ss_pred eeecCcccccccc---hHHHHHHHhhhccCCCCc
Q 015122 5 SLKCGDCGALLRS---VQEAQEHAELTSHSNFSE 35 (413)
Q Consensus 5 ~l~C~~C~~~~~~---~~~aq~h~~~tgh~~F~e 35 (413)
.--|..|+.++-+ ..-++.|...|||..+-.
T Consensus 11 l~~CL~C~~~~c~~~~~~h~~~H~~~t~H~~~~~ 44 (50)
T smart00290 11 LWLCLTCGQVGCGRYQLGHALEHFEETGHPLVVK 44 (50)
T ss_pred eEEecCCCCcccCCCCCcHHHHHhhhhCCCEEEE
Confidence 3468889888743 345999999999987653
No 111
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=52.96 E-value=2e+02 Score=26.97 Aligned_cols=26 Identities=38% Similarity=0.386 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhHHHH
Q 015122 177 SLTPEEIKLKAQELRERARKKKEEEE 202 (413)
Q Consensus 177 ~lT~eEk~~k~~el~~k~r~~r~eee 202 (413)
..++||+..=|.+.+..+|+.++.++
T Consensus 18 TtdaEEAtkiLAEkRRlAReQkErEE 43 (171)
T PF05672_consen 18 TTDAEEATKILAEKRRLAREQKEREE 43 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 57889998888888888877765444
No 112
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=52.20 E-value=1.9e+02 Score=26.49 Aligned_cols=14 Identities=29% Similarity=0.200 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 015122 181 EEIKLKAQELRERA 194 (413)
Q Consensus 181 eEk~~k~~el~~k~ 194 (413)
+++..++..=...+
T Consensus 34 eeR~~~I~~~Ld~A 47 (154)
T PRK06568 34 DAKILEVQEKVLKA 47 (154)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555444444333
No 113
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=51.97 E-value=77 Score=32.67 Aligned_cols=21 Identities=14% Similarity=0.033 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHHhhccCC
Q 015122 389 VDMAVLNSAGSELTSAINNPF 409 (413)
Q Consensus 389 ~~~~~L~~A~~~L~~Al~~p~ 409 (413)
.|..............+.||+
T Consensus 307 ~drq~drr~~~~rr~~~~~~~ 327 (361)
T KOG3634|consen 307 YDRQTDRRNFGDRRYVFDNPE 327 (361)
T ss_pred hhhHHHhhhccchhhhhcCcc
Confidence 455555666666666666664
No 114
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=51.47 E-value=1.6e+02 Score=31.99 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=8.9
Q ss_pred hCCCCHHHH-HHHHHHh
Q 015122 123 AMGFPVARA-TRALHYS 138 (413)
Q Consensus 123 ~MGF~~~~a-~kAL~~t 138 (413)
..||+..-| .-|.+.|
T Consensus 95 aygY~~~~a~~lA~fit 111 (489)
T PF05262_consen 95 AYGYSDEDAETLATFIT 111 (489)
T ss_pred hcCCChhhHHHHHHHHH
Confidence 578877544 3444433
No 115
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=51.37 E-value=9.1 Score=26.14 Aligned_cols=26 Identities=27% Similarity=0.653 Sum_probs=18.7
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
.-+|.+||.+..|.. .-..||.||.+
T Consensus 2 ~~~C~~CG~i~~g~~---------------------~p~~CP~Cg~~ 27 (34)
T cd00729 2 VWVCPVCGYIHEGEE---------------------APEKCPICGAP 27 (34)
T ss_pred eEECCCCCCEeECCc---------------------CCCcCcCCCCc
Confidence 358999998876542 11399999975
No 116
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=51.31 E-value=3.2e+02 Score=28.84 Aligned_cols=11 Identities=27% Similarity=0.181 Sum_probs=6.4
Q ss_pred CHHHHHHHHHH
Q 015122 390 DMAVLNSAGSE 400 (413)
Q Consensus 390 ~~~~L~~A~~~ 400 (413)
|..+.+.+...
T Consensus 349 d~aldrAA~~A 359 (387)
T PRK09510 349 DPALCQAALAA 359 (387)
T ss_pred CHHHHHHHHHH
Confidence 55566665555
No 117
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=51.18 E-value=2.4e+02 Score=32.73 Aligned_cols=22 Identities=36% Similarity=0.367 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 015122 225 RIEEENERKRILALRKAEKEEE 246 (413)
Q Consensus 225 ~~~ee~e~k~~~e~rkrEK~e~ 246 (413)
++.+|...++.-|++.++++++
T Consensus 805 re~EEEr~Rr~EEe~~ae~~ee 826 (988)
T KOG2072|consen 805 REIEEERARREEEEANAERQEE 826 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 118
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=50.84 E-value=13 Score=34.66 Aligned_cols=30 Identities=27% Similarity=0.655 Sum_probs=19.7
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
.--.|..||... ...+|-+ .+|.||.||..
T Consensus 116 ~~Y~Cp~C~~ry-tf~eA~~-----------------~~F~Cp~Cg~~ 145 (178)
T PRK06266 116 MFFFCPNCHIRF-TFDEAME-----------------YGFRCPQCGEM 145 (178)
T ss_pred CEEECCCCCcEE-eHHHHhh-----------------cCCcCCCCCCC
Confidence 345798888544 3344431 26999999985
No 119
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=50.62 E-value=5.5 Score=30.39 Aligned_cols=30 Identities=27% Similarity=0.666 Sum_probs=20.4
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
..|+|..|++++. + +.|... ++-+||.|..
T Consensus 3 ~tiRC~~CnKlLa---------~----a~~~~y----le~KCPrCK~ 32 (60)
T COG4416 3 QTIRCAKCNKLLA---------E----AEGQAY----LEKKCPRCKE 32 (60)
T ss_pred eeeehHHHhHHHH---------h----ccccee----eeecCCccce
Confidence 4689999999873 2 223333 4569999974
No 120
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=50.61 E-value=36 Score=30.82 Aligned_cols=20 Identities=40% Similarity=0.718 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015122 247 KRAREKIRQKLEEDKAERRRRLGLPPE 273 (413)
Q Consensus 247 ~~ar~ri~~qIe~Dk~eR~~k~~~~~~ 273 (413)
.+.|+++|++| |.||+++..
T Consensus 58 eaERe~mRq~I-------RdKY~l~k~ 77 (139)
T PF05835_consen 58 EAEREKMRQHI-------RDKYGLKKK 77 (139)
T ss_dssp HHHHHHHHHHH-------HHHHT----
T ss_pred HHHHHHHHHHH-------Hhhcccccc
Confidence 35677888888 345777664
No 121
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=50.01 E-value=2.8e+02 Score=31.79 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=20.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCC
Q 015122 115 KELLKELEAMGFPVARATRALHYSGN 140 (413)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn 140 (413)
..++....-+|||.....+|-...+.
T Consensus 483 S~a~~iA~~~Glp~~ii~~A~~~~~~ 508 (771)
T TIGR01069 483 SYAFEIAQRYGIPHFIIEQAKTFYGE 508 (771)
T ss_pred cHHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 46788888899999999988766553
No 122
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=49.99 E-value=9.3 Score=37.65 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=54.3
Q ss_pred eeecCcccccccchHHHHHHHh------hhccCCCCcc------hhhhhhcccCCCCCCCCCcccccccccccccccccc
Q 015122 5 SLKCGDCGALLRSVQEAQEHAE------LTSHSNFSES------TEAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVD 72 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~------~tgh~~F~e~------~e~~~~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~ 72 (413)
..+|..||..-....- .+.- ...-.+|.++ .+......|..|++. ....-+..+.+.|+
T Consensus 133 ~~~c~~c~~~~~~~~~--~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~a~C~~C~~~-------~~~~~~r~i~~LPp 203 (295)
T PF13423_consen 133 TIRCTSCGHESVKESS--TLVLDLPYPPSNSNVTFSQVLEHSLNREQQTRAWCEKCNKY-------QPTEQRRTIRSLPP 203 (295)
T ss_pred eecccccCCeEEeecc--eeeeeccCCCCCccchHHHHHHHHHhhcccccccccccccc-------cceeeeeeccCCCc
Confidence 5688888886522111 0000 0112355553 133445799999985 45566667899999
Q ss_pred chhcccccccccc--Cccc---cCCccccccCCC
Q 015122 73 KTSEAAKPISLEV--PKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 73 ~L~v~~~r~~l~~--p~K~---~~~~~~ldl~~~ 101 (413)
+|+|+..+...+. +.|. +.+|..++++.+
T Consensus 204 VL~In~~~~~~~~~w~~~~~~~~~ip~~i~~~~~ 237 (295)
T PF13423_consen 204 VLSINLNRYSEEEFWPKKNWLKIWIPPSINLPHF 237 (295)
T ss_pred EEEEEccCCCcccccccccCCceecceeeecccc
Confidence 9999999888884 4444 445666666644
No 123
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=49.84 E-value=2.7e+02 Score=30.67 Aligned_cols=15 Identities=7% Similarity=0.406 Sum_probs=9.2
Q ss_pred cHHHHHHHcCCeeec
Q 015122 363 GGLEFLELCGFEKIE 377 (413)
Q Consensus 363 ga~e~L~a~GF~~~~ 377 (413)
+-.+.+.-+||...+
T Consensus 446 ~~Eq~~k~mGyk~~d 460 (591)
T KOG2412|consen 446 STEQYQKMMGYKAWD 460 (591)
T ss_pred cHHHHHHhhcccccc
Confidence 455666667776543
No 124
>KOG3080 consensus Nucleolar protein-like/EBNA1-binding protein [RNA processing and modification]
Probab=49.67 E-value=1e+02 Score=31.34 Aligned_cols=54 Identities=30% Similarity=0.432 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015122 188 QELRERARKKKEEEEKRMEREREKERIRIGKELLEAKRIEEENERKRILALRKA 241 (413)
Q Consensus 188 ~el~~k~r~~r~eeek~~~~e~E~~Rr~~gKe~~~~k~~~ee~e~k~~~e~rkr 241 (413)
+..+.++-.+....++.++..+-++-++.||.+|.++.+....|-+..++..++
T Consensus 183 qKVr~~Li~eq~~ke~sE~ark~RelKKfgKqVQ~~~l~~Rq~EKk~~lekiKk 236 (328)
T KOG3080|consen 183 QKVRQRLIKEQTAKERSEEARKQRELKKFGKQVQKAKLQERQREKKETLEKIKK 236 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555667778999999988766666666666665554
No 125
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=49.62 E-value=9.5 Score=32.86 Aligned_cols=27 Identities=30% Similarity=0.885 Sum_probs=16.2
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
.+.+|.+||..+.-. ...+.||.||+.
T Consensus 69 ~~~~C~~Cg~~~~~~---------------------~~~~~CP~Cgs~ 95 (113)
T PF01155_consen 69 ARARCRDCGHEFEPD---------------------EFDFSCPRCGSP 95 (113)
T ss_dssp -EEEETTTS-EEECH---------------------HCCHH-SSSSSS
T ss_pred CcEECCCCCCEEecC---------------------CCCCCCcCCcCC
Confidence 568899998765321 112569999985
No 126
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=48.34 E-value=7.2 Score=44.04 Aligned_cols=57 Identities=9% Similarity=-0.158 Sum_probs=42.3
Q ss_pred hhhcccCCCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccCCC
Q 015122 40 VLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 40 ~~~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~~~ 101 (413)
...-.|=.|.+-| ..-|.|-.-|.|||.+|-++.+||..+. -+|. -..|+.+|+..|
T Consensus 353 l~GdN~Y~ae~~G-----lqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pf 416 (1089)
T COG5077 353 LDGDNRYNAEKHG-----LQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPF 416 (1089)
T ss_pred ccCCccccccccc-----chhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccc
Confidence 3334555554432 2467888999999999999999999984 5565 447999999866
No 127
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=47.52 E-value=2.9e+02 Score=27.28 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhhcCCchHHHHHHHH-HHHHHHhhhccCCC
Q 015122 301 EQMRECLRSLKQNHKDDDAKVKRAFQ-TLLTYIGNVAKNPN 340 (413)
Q Consensus 301 eqlr~~L~slk~~~~~s~a~~~~a~~-tL~~~l~Ni~~~P~ 340 (413)
.-|..+|..+..--.+. .+..++. ||.-++.+|+=||.
T Consensus 224 ~A~~~Wl~~~~~kpkpv--p~~~G~~s~Lrgt~s~~y~NP~ 262 (264)
T PF13904_consen 224 EAFQKWLKNVKNKPKPV--PLNQGYDSTLRGTYSPIYINPI 262 (264)
T ss_pred HHHHHHHHHcccCCCCC--CcCCCCCccccCcCCccccCCC
Confidence 34566666665443332 2445666 68888888888885
No 128
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=47.33 E-value=5 Score=36.92 Aligned_cols=37 Identities=30% Similarity=0.599 Sum_probs=24.2
Q ss_pred ecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 7 KCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 7 ~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
-|..||+-+. .+...|-=-+|+++- +.-|.|++||-+
T Consensus 2 ~Cp~C~~~~~------~~~~~~~IP~F~evi--i~sf~C~~CGyk 38 (160)
T smart00709 2 DCPSCGGNGT------TRMLLTSIPYFREVI--IMSFECEHCGYR 38 (160)
T ss_pred cCCCCCCCCE------EEEEEecCCCcceEE--EEEEECCCCCCc
Confidence 4999987643 112224445699972 346999999975
No 129
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=46.73 E-value=8.1 Score=38.59 Aligned_cols=56 Identities=21% Similarity=0.428 Sum_probs=40.0
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCCCCccccccccccc
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRKRT 65 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~~~~~e~~~~~K~t 65 (413)
-+-+|..||+....... +.. |..|.=..++..-+.|+.|||...|.++...|+.+.
T Consensus 129 ~r~~c~eCgk~ysT~sn---Lsr---HkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH 184 (279)
T KOG2462|consen 129 PRYKCPECGKSYSTSSN---LSR---HKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTH 184 (279)
T ss_pred Cceeccccccccccccc---cch---hhcccccccccccccCCCCCceeeehHHHhhHhhcc
Confidence 46789999999865432 222 677776666677799999999877777766666554
No 130
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=46.63 E-value=98 Score=31.35 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=12.3
Q ss_pred ccccccchhccccccccccCc
Q 015122 67 HTDFVDKTSEAAKPISLEVPK 87 (413)
Q Consensus 67 ~~tfp~~L~v~~~r~~l~~p~ 87 (413)
+.-|.|.|-|-+.-+.++-|.
T Consensus 106 lsgfad~lkvka~eakidfps 126 (445)
T KOG2891|consen 106 LSGFADILKVKAAEAKIDFPS 126 (445)
T ss_pred ecccchHHhhhHHhhcCCCCc
Confidence 334556676666666666544
No 131
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=46.54 E-value=12 Score=32.80 Aligned_cols=12 Identities=33% Similarity=0.827 Sum_probs=9.9
Q ss_pred hhhcccCCCCCC
Q 015122 40 VLNLVCATCGKP 51 (413)
Q Consensus 40 ~~~~~C~~C~~~ 51 (413)
..+|.||.||+.
T Consensus 84 ~~~~~CP~C~s~ 95 (115)
T COG0375 84 ELDYRCPKCGSI 95 (115)
T ss_pred hheeECCCCCCC
Confidence 567889999975
No 132
>COG5134 Uncharacterized conserved protein [Function unknown]
Probab=46.44 E-value=11 Score=36.58 Aligned_cols=50 Identities=12% Similarity=0.366 Sum_probs=28.1
Q ss_pred CCceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 2 ~~~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
.-|.++|..||.-..-...=..--+..|..++-...---.-..|+.|+.+
T Consensus 39 TPF~~RCL~C~~YI~K~~rfNavkE~~~dK~y~~~kiYRf~I~C~~C~n~ 88 (272)
T COG5134 39 TPFPVRCLNCENYIQKGTRFNAVKEEIGDKSYYTTKIYRFSIKCHLCSNP 88 (272)
T ss_pred cCcceeecchhhhhhcccchhHHHHHhcccccceeEEEEEEEEccCCCCc
Confidence 46999999999876333222222233345555443111123479999985
No 133
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=46.25 E-value=3e+02 Score=27.00 Aligned_cols=18 Identities=6% Similarity=0.161 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 015122 181 EEIKLKAQELRERARKKK 198 (413)
Q Consensus 181 eEk~~k~~el~~k~r~~r 198 (413)
++++.++..-.+.+.+.+
T Consensus 35 ~eR~~~I~~~l~~Ae~~~ 52 (250)
T PRK14474 35 KKRQQRIANRWQDAEQRQ 52 (250)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666555555544433
No 134
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=46.21 E-value=81 Score=23.65 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=33.6
Q ss_pred cccCHHHHHHHH--hCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 015122 111 PEVDKELLKELE--AMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (413)
Q Consensus 111 ~~~~~~~l~~L~--~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (413)
+.+.++++.+.. =-|-|++...+-|..|+= ++..|+|-|++..|+
T Consensus 6 ~~vPedlI~q~q~VLqgksR~vIirELqrTnL-dVN~AvNNlLsRDde 52 (53)
T PF11547_consen 6 SQVPEDLINQAQVVLQGKSRNVIIRELQRTNL-DVNLAVNNLLSRDDE 52 (53)
T ss_dssp GGS-HHHHHHHHHHSTTS-HHHHHHHHHHTTT--HHHHHHHHHHHH--
T ss_pred ccCCHHHHHHHHHHHcCCcHHHHHHHHHHhcc-cHHHHHHHHhccccC
Confidence 456778877665 479999999999999875 999999999987654
No 135
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.99 E-value=16 Score=40.89 Aligned_cols=74 Identities=26% Similarity=0.513 Sum_probs=44.5
Q ss_pred eeecCcccccccchHH-HHHHHhhhccCCCCcc------hhhhhhcccCCCCCCCCCccccccccccccccccccchhcc
Q 015122 5 SLKCGDCGALLRSVQE-AQEHAELTSHSNFSES------TEAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEA 77 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~-aq~h~~~tgh~~F~e~------~e~~~~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~ 77 (413)
.++|.+||.|=.-..+ +-.+-+ -..|.+- .++-++..||.||++. . .-|.-..||.|.-.-.
T Consensus 436 ivhc~~cG~vpVpes~LPV~LP~---l~~~~~kG~Pls~~~e~vn~~cP~cg~pA--k------RETDTMDTFvDSsWYY 504 (876)
T KOG0435|consen 436 IVHCDDCGAVPVPESELPVTLPE---LNDFTPKGPPLSKADEWVNVDCPRCGEPA--K------RETDTMDTFVDSSWYY 504 (876)
T ss_pred eEEcCCCCcccCcHHHCCccccc---ccccCCCCCcccchhhheeccCccCCCcc--c------ccccccchhhccceee
Confidence 4799999988755554 333322 1223221 3677889999999862 2 2223367888877766
Q ss_pred ccccccccCccc
Q 015122 78 AKPISLEVPKAT 89 (413)
Q Consensus 78 ~~r~~l~~p~K~ 89 (413)
.|=.+--||-++
T Consensus 505 lRylDpkN~e~~ 516 (876)
T KOG0435|consen 505 LRYLDPKNPEEP 516 (876)
T ss_pred EeecCCCCcccc
Confidence 653333455544
No 136
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=45.97 E-value=9.9 Score=26.01 Aligned_cols=34 Identities=21% Similarity=0.560 Sum_probs=20.7
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
+.+.|..||..+.-..+.- . +.-...+||.||..
T Consensus 1 M~~~CP~C~~~~~v~~~~~-----------~---~~~~~v~C~~C~~~ 34 (38)
T TIGR02098 1 MRIQCPNCKTSFRVVDSQL-----------G---ANGGKVRCGKCGHV 34 (38)
T ss_pred CEEECCCCCCEEEeCHHHc-----------C---CCCCEEECCCCCCE
Confidence 4689999998764332210 0 01124689999975
No 137
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=45.54 E-value=9.4 Score=34.25 Aligned_cols=43 Identities=21% Similarity=0.376 Sum_probs=25.3
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
--+|..|+..+....... -.+.-....|... ..=+.||.||+-
T Consensus 91 ~sRC~~CN~~L~~v~~~~-v~~~vp~~v~~~~---~~f~~C~~C~ki 133 (147)
T PF01927_consen 91 FSRCPKCNGPLRPVSKEE-VKDRVPPYVYETY---DEFWRCPGCGKI 133 (147)
T ss_pred CCccCCCCcEeeechhhc-cccccCccccccC---CeEEECCCCCCE
Confidence 458999999986664322 1111334444333 113799999973
No 138
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=44.28 E-value=2.9e+02 Score=32.06 Aligned_cols=23 Identities=26% Similarity=0.396 Sum_probs=9.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 015122 233 KRILALRKAEKEEEKRAREKIRQ 255 (413)
Q Consensus 233 k~~~e~rkrEK~e~~~ar~ri~~ 255 (413)
++..++|..+....+..++|-++
T Consensus 832 kr~~~eRe~e~~~ak~ekqr~re 854 (988)
T KOG2072|consen 832 KRTEEEREIENRVAKKEKQRQRE 854 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333333344433344444444
No 139
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=43.94 E-value=4.3e+02 Score=28.17 Aligned_cols=35 Identities=37% Similarity=0.526 Sum_probs=22.4
Q ss_pred hhccCCCccccccccccchhhhhhccCcccHHHHHHH
Q 015122 334 NVAKNPNEEKFRKIRLSNQTFQDRVGALKGGLEFLEL 370 (413)
Q Consensus 334 Ni~~~P~e~KfRrIr~~N~~f~~kV~~~~ga~e~L~a 370 (413)
..+.+|..+-=.|..+-+..|-.+|.+ .++++|..
T Consensus 221 r~l~d~~~~~~~k~~l~~~l~~~~~~~--~~~~~~~~ 255 (445)
T PRK13428 221 KHLTEPAEDAAPKIRLVERLFSGKVGA--PTLEVLRT 255 (445)
T ss_pred HHcCCCCCChhhHHHHHHHHhCcCCCH--HHHHHHHH
Confidence 356677777777777777777777654 34454443
No 140
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=43.68 E-value=13 Score=34.46 Aligned_cols=12 Identities=25% Similarity=0.758 Sum_probs=9.5
Q ss_pred eecCcccccccc
Q 015122 6 LKCGDCGALLRS 17 (413)
Q Consensus 6 l~C~~C~~~~~~ 17 (413)
-+|..|++.+.-
T Consensus 98 ~RCp~CN~~L~~ 109 (165)
T COG1656 98 SRCPECNGELEK 109 (165)
T ss_pred ccCcccCCEecc
Confidence 479999999843
No 141
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=43.57 E-value=25 Score=27.26 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.3
Q ss_pred HHHHhCCCCHHHHHHHHHH
Q 015122 119 KELEAMGFPVARATRALHY 137 (413)
Q Consensus 119 ~~L~~MGF~~~~a~kAL~~ 137 (413)
..|++|||++..|.+-++.
T Consensus 7 ~dLi~lGf~~~tA~~IIrq 25 (59)
T PF11372_consen 7 KDLIELGFSESTARDIIRQ 25 (59)
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 5799999999999987755
No 142
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=43.37 E-value=2.5e+02 Score=25.25 Aligned_cols=17 Identities=18% Similarity=0.057 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 015122 181 EEIKLKAQELRERARKK 197 (413)
Q Consensus 181 eEk~~k~~el~~k~r~~ 197 (413)
++|..++..-...+.+.
T Consensus 52 ~~R~~~I~~~l~~Ae~~ 68 (156)
T CHL00118 52 DERKEYIRKNLTKASEI 68 (156)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666655555544433
No 143
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=43.29 E-value=44 Score=33.87 Aligned_cols=40 Identities=28% Similarity=0.541 Sum_probs=32.5
Q ss_pred cCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 113 VDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEH 153 (413)
Q Consensus 113 ~~~~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (413)
+...+|..|-+ -|=+.--|++||..|++ |+|.|++||-..
T Consensus 4 ita~~VKeLRe~TgAGMmdCKkAL~E~~G-d~EkAie~LR~k 44 (296)
T COG0264 4 ITAALVKELREKTGAGMMDCKKALEEANG-DIEKAIEWLREK 44 (296)
T ss_pred ccHHHHHHHHHHhCCcHHHHHHHHHHcCC-CHHHHHHHHHHh
Confidence 45567777764 47788899999999976 999999999874
No 144
>PHA00733 hypothetical protein
Probab=43.17 E-value=25 Score=31.04 Aligned_cols=35 Identities=31% Similarity=0.582 Sum_probs=20.7
Q ss_pred eecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
..|..||..+.....-..|.....| .|.|+.|++.
T Consensus 74 y~C~~Cgk~Fss~s~L~~H~r~h~~-----------~~~C~~CgK~ 108 (128)
T PHA00733 74 YVCPLCLMPFSSSVSLKQHIRYTEH-----------SKVCPVCGKE 108 (128)
T ss_pred ccCCCCCCcCCCHHHHHHHHhcCCc-----------CccCCCCCCc
Confidence 4577777777666666666552111 2677777764
No 145
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=42.62 E-value=7.1 Score=24.76 Aligned_cols=25 Identities=20% Similarity=0.527 Sum_probs=19.7
Q ss_pred eecCcccccccchHHHHHHHhhhcc
Q 015122 6 LKCGDCGALLRSVQEAQEHAELTSH 30 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~~tgh 30 (413)
.-|..|+..+.+...-+.|.....|
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk~H 26 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSKKH 26 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSHHH
T ss_pred CCcccCCCCcCCHHHHHHHHccCCC
Confidence 4699999999999998888764333
No 146
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=42.46 E-value=13 Score=33.36 Aligned_cols=11 Identities=27% Similarity=1.047 Sum_probs=9.0
Q ss_pred ecCcccccccc
Q 015122 7 KCGDCGALLRS 17 (413)
Q Consensus 7 ~C~~C~~~~~~ 17 (413)
+|+.||.++.+
T Consensus 3 ~Ct~Cg~~f~d 13 (131)
T PF09845_consen 3 QCTKCGRVFED 13 (131)
T ss_pred ccCcCCCCcCC
Confidence 79999988753
No 147
>PF05907 DUF866: Eukaryotic protein of unknown function (DUF866); InterPro: IPR008584 This family consists of a number of hypothetical eukaryotic proteins of unknown function with an average length of around 165 residues.; PDB: 1ZSO_B.
Probab=42.38 E-value=5.6 Score=36.60 Aligned_cols=41 Identities=22% Similarity=0.530 Sum_probs=18.1
Q ss_pred CceeecCcccccc---cchHHHHHHH--hhhccCCCCcchhhhhhcccCCCCCC
Q 015122 3 GVSLKCGDCGALL---RSVQEAQEHA--ELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 3 ~~~l~C~~C~~~~---~~~~~aq~h~--~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
.|.|+|+.||.+- ...+....|- --+|.+|| -++|..|++.
T Consensus 28 ~fkvkCt~CgE~~~k~V~i~~~e~~e~~gsrG~aNf--------v~KCk~C~re 73 (161)
T PF05907_consen 28 FFKVKCTSCGEVHPKWVYINRFEKHEIPGSRGTANF--------VMKCKFCKRE 73 (161)
T ss_dssp EEEEEETTSS--EEEEEEE-TT-BEE-TTSS-EESE--------EE--SSSS--
T ss_pred EEEEEECCCCCccCcceEeecceEEecCCCccceEe--------EecCcCcCCc
Confidence 4899999999864 1222221111 12333333 3799999875
No 148
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=42.28 E-value=2.7e+02 Score=25.39 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 015122 181 EEIKLKAQELRERARK 196 (413)
Q Consensus 181 eEk~~k~~el~~k~r~ 196 (413)
++++.++..-...+..
T Consensus 49 ~~R~~~I~~~l~~A~~ 64 (174)
T PRK07352 49 EERREAILQALKEAEE 64 (174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455554444444433
No 149
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=41.96 E-value=15 Score=32.29 Aligned_cols=12 Identities=33% Similarity=0.792 Sum_probs=8.8
Q ss_pred ceeecCccccccc
Q 015122 4 VSLKCGDCGALLR 16 (413)
Q Consensus 4 ~~l~C~~C~~~~~ 16 (413)
.+.+| .||..+.
T Consensus 69 ~~~~C-~Cg~~~~ 80 (124)
T PRK00762 69 VEIEC-ECGYEGV 80 (124)
T ss_pred eeEEe-eCcCccc
Confidence 46789 9996543
No 150
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=41.83 E-value=2.8e+02 Score=25.36 Aligned_cols=14 Identities=21% Similarity=0.088 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 015122 181 EEIKLKAQELRERA 194 (413)
Q Consensus 181 eEk~~k~~el~~k~ 194 (413)
+++..++..-...+
T Consensus 46 ~~R~~~I~~~l~~A 59 (173)
T PRK13460 46 DERASGVQNDINKA 59 (173)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444433333
No 151
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=41.50 E-value=2.9e+02 Score=30.06 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 015122 248 RAREKIRQKLEEDKAERRRRL 268 (413)
Q Consensus 248 ~ar~ri~~qIe~Dk~eR~~k~ 268 (413)
..+.+.++.|+.-+++.+.+.
T Consensus 311 EEkRr~kEeierrraeaAEKR 331 (492)
T PF02029_consen 311 EEKRREKEEIERRRAEAAEKR 331 (492)
T ss_pred hhhhhhhHHHHHhhhhhhHhh
Confidence 335566777766555544433
No 152
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=41.46 E-value=58 Score=30.78 Aligned_cols=39 Identities=21% Similarity=0.490 Sum_probs=29.9
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhC---CCCHHHHHHHHHH
Q 015122 114 DKELLKELEAMGFPVARATRALHYSG---NANVEAAVNWVVE 152 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~~~a~kAL~~tg---n~~~E~A~~Wl~~ 152 (413)
..+++..|.++||+...|.+|+...+ +.+++..+-+.+.
T Consensus 148 ~~e~~~aL~~LGy~~~~a~~ai~~~~~~~~~~~~~~ir~aLk 189 (194)
T PRK14605 148 NSDILATLTALGYSSSEAAKAISSLGDNGDLPLEERIKLALN 189 (194)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence 46789999999999999999998764 3356665555443
No 153
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=41.31 E-value=1.6e+02 Score=33.31 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Q 015122 246 EKRAREKIRQKLEEDKAERRRRLGL 270 (413)
Q Consensus 246 ~~~ar~ri~~qIe~Dk~eR~~k~~~ 270 (413)
+.-+|+-|-+|+...+.-++.-.+.
T Consensus 300 d~~~R~al~eql~~~~eL~~Ki~~~ 324 (735)
T PF04615_consen 300 DEEARQALQEQLRRGEELTRKIEGE 324 (735)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3457777888888888777665554
No 154
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=41.05 E-value=22 Score=25.74 Aligned_cols=17 Identities=41% Similarity=0.700 Sum_probs=12.5
Q ss_pred cccCCCCCCCCCcccccccccccc
Q 015122 43 LVCATCGKPCRSKTETDLHRKRTG 66 (413)
Q Consensus 43 ~~C~~C~~~~~~~~e~~~~~K~t~ 66 (413)
.+||.||.. ..+-++|.
T Consensus 20 irC~~CG~r-------IlyK~R~~ 36 (44)
T smart00659 20 VRCRECGYR-------ILYKKRTK 36 (44)
T ss_pred eECCCCCce-------EEEEeCCC
Confidence 699999986 56666553
No 155
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=40.66 E-value=62 Score=30.42 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=25.6
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHH
Q 015122 114 DKELLKELEAMGFPVARATRALHYSGNANVEA 145 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~ 145 (413)
..++++.|+++||++..|.+|+..-.+.+++.
T Consensus 142 ~~ea~~AL~~LGy~~~ea~~a~~~~~~~~~ee 173 (183)
T PRK14601 142 KSEALAALLTLGFKQEKIIKVLASCQSTGTSE 173 (183)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcccCCHHH
Confidence 36889999999999999999997764434443
No 156
>PRK05978 hypothetical protein; Provisional
Probab=40.66 E-value=15 Score=33.53 Aligned_cols=31 Identities=29% Similarity=0.511 Sum_probs=19.3
Q ss_pred CceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 3 ~~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
+++.+|-.||... - |...- .+.-.|++||..
T Consensus 31 Gl~grCP~CG~G~---------------L-F~g~L--kv~~~C~~CG~~ 61 (148)
T PRK05978 31 GFRGRCPACGEGK---------------L-FRAFL--KPVDHCAACGED 61 (148)
T ss_pred HHcCcCCCCCCCc---------------c-ccccc--ccCCCccccCCc
Confidence 6788899998543 2 22221 234589999975
No 157
>KOG2907 consensus RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12 [Transcription]
Probab=40.65 E-value=8.6 Score=33.53 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=16.9
Q ss_pred hhhhhcccCCCCCCCCCcccccccccccc
Q 015122 38 EAVLNLVCATCGKPCRSKTETDLHRKRTG 66 (413)
Q Consensus 38 e~~~~~~C~~C~~~~~~~~e~~~~~K~t~ 66 (413)
..+++-+||.||-. +++-|+-++|
T Consensus 70 ga~I~~kCpkCghe-----~m~Y~T~QlR 93 (116)
T KOG2907|consen 70 GAVIKHKCPKCGHE-----EMSYHTLQLR 93 (116)
T ss_pred ccchhccCcccCCc-----hhhhhhhhcc
Confidence 46788999999964 4555655554
No 158
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=40.59 E-value=3.3e+02 Score=25.91 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 015122 181 EEIKLKAQELRERARKKK 198 (413)
Q Consensus 181 eEk~~k~~el~~k~r~~r 198 (413)
++|..++..-.+.+...+
T Consensus 83 e~R~~~I~~~L~~Ae~~k 100 (204)
T PRK09174 83 ETRRDRIAQDLDQAARLK 100 (204)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666555555544443
No 159
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=40.50 E-value=2.2e+02 Score=30.59 Aligned_cols=20 Identities=40% Similarity=0.518 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhH
Q 015122 180 PEEIKLKAQELRERARKKKE 199 (413)
Q Consensus 180 ~eEk~~k~~el~~k~r~~r~ 199 (413)
-|||+-.+++||+++++.+.
T Consensus 249 HEeKQ~~AeeLRekLqE~Ka 268 (672)
T KOG4722|consen 249 HEEKQKHAEELREKLQEAKA 268 (672)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999988765
No 160
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=40.08 E-value=3.6e+02 Score=28.88 Aligned_cols=8 Identities=25% Similarity=0.547 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 015122 257 LEEDKAER 264 (413)
Q Consensus 257 Ie~Dk~eR 264 (413)
+++-|..|
T Consensus 373 ~~~~~~~~ 380 (429)
T PRK00247 373 MARARARR 380 (429)
T ss_pred HHHHHHHH
Confidence 43334444
No 161
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=39.94 E-value=26 Score=20.39 Aligned_cols=20 Identities=35% Similarity=0.698 Sum_probs=15.1
Q ss_pred ecCcccccccchHHHHHHHh
Q 015122 7 KCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 7 ~C~~C~~~~~~~~~aq~h~~ 26 (413)
+|..|+..+....+=+.|..
T Consensus 2 ~C~~C~~~~~~~~~l~~H~~ 21 (24)
T PF13894_consen 2 QCPICGKSFRSKSELRQHMR 21 (24)
T ss_dssp E-SSTS-EESSHHHHHHHHH
T ss_pred CCcCCCCcCCcHHHHHHHHH
Confidence 68899999988888888876
No 162
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.92 E-value=6.9e+02 Score=29.62 Aligned_cols=80 Identities=28% Similarity=0.395 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHH
Q 015122 177 SLTPEEIKLKAQELRERARKKKE--EEEKRMEREREKERIRIGKELLEAKRIEEEN--ERKRILALRKAEKEEEKRAREK 252 (413)
Q Consensus 177 ~lT~eEk~~k~~el~~k~r~~r~--eeek~~~~e~E~~Rr~~gKe~~~~k~~~ee~--e~k~~~e~rkrEK~e~~~ar~r 252 (413)
.-|++|-++++++|.+++...|- .+.+..-+|=++.+|.- ..+++.|-++-.+ ...|.+...|.|+.+-..++++
T Consensus 223 skte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~Elekmkiql-eqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~ 301 (1243)
T KOG0971|consen 223 SKTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQL-EQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKER 301 (1243)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999998854432 23333333334444432 2334444443332 2344555556666666666666
Q ss_pred HHHHH
Q 015122 253 IRQKL 257 (413)
Q Consensus 253 i~~qI 257 (413)
-+..+
T Consensus 302 ~k~em 306 (1243)
T KOG0971|consen 302 YKEEM 306 (1243)
T ss_pred HHHHH
Confidence 65544
No 163
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=39.51 E-value=22 Score=21.70 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=18.1
Q ss_pred eecCcccccccchHHHHHHHh
Q 015122 6 LKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~ 26 (413)
..|..|+..+.+...-+.|..
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHC
Confidence 369999999999999998876
No 164
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=39.01 E-value=2.9e+02 Score=24.75 Aligned_cols=14 Identities=7% Similarity=-0.045 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 015122 181 EEIKLKAQELRERA 194 (413)
Q Consensus 181 eEk~~k~~el~~k~ 194 (413)
+++...+..-...+
T Consensus 32 ~~R~~~I~~~l~~A 45 (159)
T PRK09173 32 DARADRIKNELAEA 45 (159)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 165
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=38.93 E-value=3.1e+02 Score=25.07 Aligned_cols=14 Identities=14% Similarity=-0.081 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 015122 181 EEIKLKAQELRERA 194 (413)
Q Consensus 181 eEk~~k~~el~~k~ 194 (413)
+++..++.+-.+.+
T Consensus 52 ~~R~~~I~~~l~~A 65 (167)
T PRK08475 52 KSRINKISKRLEEI 65 (167)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555544444443
No 166
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=38.92 E-value=3e+02 Score=24.98 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 015122 181 EEIKLKAQELRERARK 196 (413)
Q Consensus 181 eEk~~k~~el~~k~r~ 196 (413)
+++..++..-.+.+..
T Consensus 40 e~R~~~I~~~l~~Ae~ 55 (167)
T PRK14475 40 DAYAAKIQAELDEAQR 55 (167)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555554444433
No 167
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=38.80 E-value=5e+02 Score=28.55 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=26.2
Q ss_pred CHHHHHHHHhCCCCHHH----------HHHHHHHhCCCCHHHHHHHHHHhcCCCCCCC
Q 015122 114 DKELLKELEAMGFPVAR----------ATRALHYSGNANVEAAVNWVVEHENDPDIDE 161 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~~~----------a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~d~ 161 (413)
-|+.++.|.+-|.+-|- ---+|++.-..+.-..+-+++++.-||.+-+
T Consensus 403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd 460 (591)
T KOG2505|consen 403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKD 460 (591)
T ss_pred chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcc
Confidence 36777777776665421 1234555433344445555666667776533
No 168
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=38.41 E-value=2.7e+02 Score=24.21 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 015122 181 EEIKLKAQELRERARKKK 198 (413)
Q Consensus 181 eEk~~k~~el~~k~r~~r 198 (413)
+++..++..-...+...+
T Consensus 35 ~~R~~~I~~~l~~Ae~~~ 52 (140)
T PRK07353 35 EEREDYIRTNRAEAKERL 52 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555444333
No 169
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=38.40 E-value=3.1e+02 Score=25.00 Aligned_cols=14 Identities=36% Similarity=0.245 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 015122 181 EEIKLKAQELRERA 194 (413)
Q Consensus 181 eEk~~k~~el~~k~ 194 (413)
+++..++..-.+.+
T Consensus 48 ~~R~~~I~~~l~~A 61 (175)
T PRK14472 48 EEREKGIQSSIDRA 61 (175)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555544444443
No 170
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=37.81 E-value=34 Score=31.27 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=10.8
Q ss_pred CCCceeecCcccccc
Q 015122 1 MAGVSLKCGDCGALL 15 (413)
Q Consensus 1 ~~~~~l~C~~C~~~~ 15 (413)
|=.|.|+|. ||+.|
T Consensus 1 MI~y~L~C~-~gH~F 14 (148)
T PF06676_consen 1 MIVYDLRCE-NGHEF 14 (148)
T ss_pred CeeEEEecC-CCCcc
Confidence 446899998 77777
No 171
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=37.58 E-value=11 Score=39.80 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=13.9
Q ss_pred HhCCCCHHHHHHHHHHhCC
Q 015122 122 EAMGFPVARATRALHYSGN 140 (413)
Q Consensus 122 ~~MGF~~~~a~kAL~~tgn 140 (413)
...||+...|--+++.+.|
T Consensus 455 ~~q~f~~ky~~atfyss~~ 473 (500)
T KOG3993|consen 455 AEQGFTCKYCPATFYSSPG 473 (500)
T ss_pred hhhccccccchHhhhcCcc
Confidence 4568888888877776654
No 172
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=36.78 E-value=21 Score=26.71 Aligned_cols=30 Identities=27% Similarity=0.657 Sum_probs=19.7
Q ss_pred CceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 3 ~~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
...-+|..||..+ +.........||.||..
T Consensus 4 ~~~Y~C~~Cg~~~-------------------~~~~~~~~irCp~Cg~r 33 (49)
T COG1996 4 MMEYKCARCGREV-------------------ELDQETRGIRCPYCGSR 33 (49)
T ss_pred eEEEEhhhcCCee-------------------ehhhccCceeCCCCCcE
Confidence 3456899998776 11122345799999975
No 173
>PRK11546 zraP zinc resistance protein; Provisional
Probab=36.70 E-value=2.2e+02 Score=25.90 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=29.8
Q ss_pred CCCCHHHHHH----------HHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 015122 176 SSLTPEEIKL----------KAQELRERARKKKEEEEKRMERE--REKERIRIGKELLEAKRIEEENERKR 234 (413)
Q Consensus 176 ~~lT~eEk~~----------k~~el~~k~r~~r~eeek~~~~e--~E~~Rr~~gKe~~~~k~~~ee~e~k~ 234 (413)
.+||+|.-.. +...||+++..|+.|-....... .+..=++.-+|+.+.+.++.++..+.
T Consensus 42 ~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~ 112 (143)
T PRK11546 42 APLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKR 112 (143)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799874322 34566666666655333221111 12223445566666666666554433
No 174
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=36.62 E-value=44 Score=31.50 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.1
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 114 DKELLKELEAMGFPVARATRALHYS 138 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~~~a~kAL~~t 138 (413)
.+++++.|.++||++..+.+|+...
T Consensus 147 ~~e~~~aL~~LGy~~~e~~~ai~~~ 171 (191)
T TIGR00084 147 RDELFEALVSLGYKPQEIQQALKKI 171 (191)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4678999999999999999998765
No 175
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=36.61 E-value=18 Score=31.16 Aligned_cols=12 Identities=25% Similarity=0.883 Sum_probs=9.6
Q ss_pred eecCcccccccc
Q 015122 6 LKCGDCGALLRS 17 (413)
Q Consensus 6 l~C~~C~~~~~~ 17 (413)
-+|+.||.++..
T Consensus 3 H~CtrCG~vf~~ 14 (112)
T COG3364 3 HQCTRCGEVFDD 14 (112)
T ss_pred ceeccccccccc
Confidence 489999988753
No 176
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=36.30 E-value=98 Score=27.76 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=36.1
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015122 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152 (413)
Q Consensus 110 ~~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~ 152 (413)
.++++.+.+..|.+-|.+++.|++||..+| ++-.||.-|..
T Consensus 110 ~s~~~~e~v~v~a~a~v~~eeAr~aleeag--Dl~~A~k~l~~ 150 (153)
T COG4008 110 HSEPPVEEVEVLADAFVTPEEAREALEEAG--DLRTAMKILRM 150 (153)
T ss_pred cCCCcHHHHHHHHHhcCCHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 456778889999999999999999999998 69999988765
No 177
>PF10827 DUF2552: Protein of unknown function (DUF2552) ; InterPro: IPR020157 This entry contains proteins with no known function.
Probab=35.97 E-value=25 Score=28.38 Aligned_cols=16 Identities=25% Similarity=0.634 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHhcCC
Q 015122 141 ANVEAAVNWVVEHEND 156 (413)
Q Consensus 141 ~~~E~A~~Wl~~h~dd 156 (413)
..++.|++||-+||++
T Consensus 59 ~tld~Ai~Wi~e~M~~ 74 (79)
T PF10827_consen 59 PTLDLAIAWIGEHMPH 74 (79)
T ss_pred ccHHHHHHHHHhcccc
Confidence 3799999999999987
No 178
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=35.89 E-value=3.5e+02 Score=24.78 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 015122 181 EEIKLKAQELRERARKK 197 (413)
Q Consensus 181 eEk~~k~~el~~k~r~~ 197 (413)
+++.+.+..-.+.+...
T Consensus 48 ~~R~~~I~~~l~~Ae~~ 64 (173)
T PRK13453 48 DKRERDINRDIDDAEQA 64 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555544444433
No 179
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=35.49 E-value=18 Score=39.96 Aligned_cols=51 Identities=8% Similarity=0.030 Sum_probs=41.3
Q ss_pred hcccCCCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccC
Q 015122 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVD 99 (413)
Q Consensus 42 ~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~ 99 (413)
-|.|..|... ..|.++.+++..|.+|+++.+||+..- =+|+ +++|..+++-
T Consensus 441 ky~c~~c~s~-------qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~ 498 (587)
T KOG1864|consen 441 KYSCENCCSL-------QEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLK 498 (587)
T ss_pred cccccccCch-------hhHHHhccccCCcceeeeehhccccccccccccccccccccccceeec
Confidence 4999999876 679999999999999999999999985 3444 5556666654
No 180
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=35.11 E-value=2.6e+02 Score=27.92 Aligned_cols=53 Identities=25% Similarity=0.356 Sum_probs=29.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015122 189 ELRERARKKKEEEEKRMEREREKERIRIGKELLEAKRIEEENERKRILALRKA 241 (413)
Q Consensus 189 el~~k~r~~r~eeek~~~~e~E~~Rr~~gKe~~~~k~~~ee~e~k~~~e~rkr 241 (413)
.++.++-.+....+..+++.+-++-.+-||.++..+...+..+.+..++..++
T Consensus 122 KVr~kLl~~~~~ie~~E~~rk~Re~KKfgKqvQ~ek~~eR~keKk~~le~Ik~ 174 (271)
T PF05890_consen 122 KVRQKLLKEQKRIEASEEARKQRELKKFGKQVQVEKLQERAKEKKEMLEKIKK 174 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433333344444555666778899999876665555555555554433
No 181
>PLN03086 PRLI-interacting factor K; Provisional
Probab=34.92 E-value=1.9e+02 Score=31.96 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=20.8
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHhhcc
Q 015122 378 GGEFLFLPREKVDMAVLNSAGSELTSAINN 407 (413)
Q Consensus 378 ~~~~lvl~~~~~~~~~L~~A~~~L~~Al~~ 407 (413)
-+.|..|.+...++--+..=++.|+++|.|
T Consensus 183 kgt~vklqP~~~~f~di~npKavLE~~Lr~ 212 (567)
T PLN03086 183 KGTYAKLQPDGVGFSDLPNHKAVLETALRQ 212 (567)
T ss_pred CCCEEEEeeccCCcCCcccHHHHHHHHhhc
Confidence 467777755555555566677788888877
No 182
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=34.92 E-value=90 Score=29.41 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 115 KELLKELEAMGFPVARATRALHYS 138 (413)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~t 138 (413)
.++++.|+++||++..|.+|+...
T Consensus 144 ~e~~~AL~~LGy~~~ea~~av~~~ 167 (188)
T PRK14606 144 HESLEALVSLGYPEKQAREAVKHV 167 (188)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 678999999999999999999776
No 183
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=34.82 E-value=5.5e+02 Score=29.49 Aligned_cols=11 Identities=36% Similarity=0.335 Sum_probs=4.4
Q ss_pred HHHHHHHcCCe
Q 015122 364 GLEFLELCGFE 374 (413)
Q Consensus 364 a~e~L~a~GF~ 374 (413)
.++-....|+.
T Consensus 713 ~ld~a~~~g~~ 723 (771)
T TIGR01069 713 FLNDALLAGYE 723 (771)
T ss_pred HHHHHHHCCCC
Confidence 33333344544
No 184
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=34.46 E-value=90 Score=29.38 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=27.0
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCC-CCHHHHHHH
Q 015122 114 DKELLKELEAMGFPVARATRALHYSGN-ANVEAAVNW 149 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~~~a~kAL~~tgn-~~~E~A~~W 149 (413)
..+++..|+++||++..+.+|+..-.. .+++..+-+
T Consensus 145 ~~e~~~aL~~LGy~~~ea~~al~~v~~~~~~eelir~ 181 (186)
T PRK14600 145 NDDALAALISLGYEKTKAFNAIQKIKPNLSTQDIIRK 181 (186)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHHH
Confidence 367899999999999999999876532 255544443
No 185
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=33.84 E-value=3.5e+02 Score=24.28 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 015122 181 EEIKLKAQELRERARKK 197 (413)
Q Consensus 181 eEk~~k~~el~~k~r~~ 197 (413)
+++...+..-...+.+.
T Consensus 38 ~~R~~~I~~~l~~A~~~ 54 (164)
T PRK14471 38 KEREDSIKNALASAEEA 54 (164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555444444333
No 186
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=33.80 E-value=4.3e+02 Score=28.78 Aligned_cols=8 Identities=13% Similarity=-0.433 Sum_probs=3.7
Q ss_pred ccchhccc
Q 015122 71 VDKTSEAA 78 (413)
Q Consensus 71 p~~L~v~~ 78 (413)
-.|.|+++
T Consensus 49 ~~y~ii~~ 56 (489)
T PF05262_consen 49 GRYYIIHA 56 (489)
T ss_pred CcEEEEEe
Confidence 44555443
No 187
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=33.60 E-value=95 Score=29.56 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.1
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 114 DKELLKELEAMGFPVARATRALHYS 138 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~~~a~kAL~~t 138 (413)
-.++++.|+++||++..|.+|+...
T Consensus 155 ~~ea~~AL~~LGy~~~ea~~av~~~ 179 (203)
T PRK14602 155 FRDALAGLANLGYGEEEARPVLKEV 179 (203)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3678999999999999999998765
No 188
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=33.48 E-value=2.7e+02 Score=24.21 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhhHHHH
Q 015122 175 KSSLTPEEIKLKAQELRERARKKKEEEE 202 (413)
Q Consensus 175 k~~lT~eEk~~k~~el~~k~r~~r~eee 202 (413)
+-.||.||.+.-+++|.++++..+.+-+
T Consensus 36 kGeln~eEak~~vddl~~q~k~~~~e~e 63 (108)
T COG3937 36 KGELNAEEAKRFVDDLLRQAKEAQGELE 63 (108)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4479999999999999999986665433
No 189
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=33.35 E-value=3.5e+02 Score=24.14 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 015122 181 EEIKLKAQELRERARKK 197 (413)
Q Consensus 181 eEk~~k~~el~~k~r~~ 197 (413)
+++...+..-...+...
T Consensus 35 ~~R~~~I~~~l~~A~~~ 51 (159)
T PRK13461 35 DSRQSEIDNKIEKADED 51 (159)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555544333
No 190
>KOG2703 consensus C4-type Zn-finger protein [General function prediction only]
Probab=33.25 E-value=17 Score=38.20 Aligned_cols=27 Identities=33% Similarity=0.876 Sum_probs=0.0
Q ss_pred cCcccccccchHHHHHHHhhhcc--------CCCCcchhhhhh-cccCCCCCC
Q 015122 8 CGDCGALLRSVQEAQEHAELTSH--------SNFSESTEAVLN-LVCATCGKP 51 (413)
Q Consensus 8 C~~C~~~~~~~~~aq~h~~~tgh--------~~F~e~~e~~~~-~~C~~C~~~ 51 (413)
|..||| +|- -+|-|. |+- |.||+||.+
T Consensus 42 Cm~Cg~--------------nG~TRlllT~IP~fREv---VimSF~CpHCG~k 77 (460)
T KOG2703|consen 42 CMNCGE--------------NGTTRLLLTSIPYFREV---VIMSFECPHCGHK 77 (460)
T ss_pred hhhccc--------------CCceeEEEeecchhhee---eeEEeecCccCCc
No 191
>PF14690 zf-ISL3: zinc-finger of transposase IS204/IS1001/IS1096/IS1165
Probab=33.15 E-value=22 Score=25.21 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=20.0
Q ss_pred cccCCCCCCCCCc-cccccccccccccccccchhccccccc
Q 015122 43 LVCATCGKPCRSK-TETDLHRKRTGHTDFVDKTSEAAKPIS 82 (413)
Q Consensus 43 ~~C~~C~~~~~~~-~e~~~~~K~t~~~tfp~~L~v~~~r~~ 82 (413)
..||.||....-. --...-.....+..+|=+|.+..+||.
T Consensus 3 ~~Cp~Cg~~~~~~~g~~~r~i~~l~~~~~~~~L~i~~~R~~ 43 (47)
T PF14690_consen 3 PRCPHCGSPSVHRHGYKTRRIRHLPIGGRPVYLRIRKRRYR 43 (47)
T ss_pred ccCCCcCCCceECCceEEEEEeecccCCEEEEEEEEeEEEE
Confidence 4799999752000 001112223344555666666666653
No 192
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=33.02 E-value=74 Score=29.86 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCC
Q 015122 115 KELLKELEAMGFPVARATRALHYSGN 140 (413)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn 140 (413)
.+++..|.++||+...|.+++...+.
T Consensus 150 ~ev~~aL~~LG~~~~~a~~~~~~~~~ 175 (192)
T PRK00116 150 EEAVSALVALGYKPKEASKAVAKILK 175 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 68999999999999999999988864
No 193
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=32.96 E-value=4e+02 Score=24.65 Aligned_cols=18 Identities=17% Similarity=-0.056 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 015122 181 EEIKLKAQELRERARKKK 198 (413)
Q Consensus 181 eEk~~k~~el~~k~r~~r 198 (413)
++|..++....+.+.+.+
T Consensus 61 ~~R~~~I~~~l~~Ae~~~ 78 (181)
T PRK13454 61 AERQGTITNDLAAAEELK 78 (181)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 566666655555554443
No 194
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=32.82 E-value=43 Score=30.57 Aligned_cols=14 Identities=29% Similarity=0.795 Sum_probs=11.5
Q ss_pred ceeecCcccccccc
Q 015122 4 VSLKCGDCGALLRS 17 (413)
Q Consensus 4 ~~l~C~~C~~~~~~ 17 (413)
++++|..|+.....
T Consensus 104 ~~~~C~~C~~~~~~ 117 (178)
T PF02146_consen 104 FRLRCSKCGKEYDR 117 (178)
T ss_dssp EEEEETTTSBEEEG
T ss_pred ceeeecCCCccccc
Confidence 57899999997754
No 195
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=32.57 E-value=37 Score=31.90 Aligned_cols=11 Identities=36% Similarity=1.117 Sum_probs=9.1
Q ss_pred hhcccCCCCCC
Q 015122 41 LNLVCATCGKP 51 (413)
Q Consensus 41 ~~~~C~~C~~~ 51 (413)
.+|+||.||..
T Consensus 131 ~~F~Cp~Cg~~ 141 (176)
T COG1675 131 LGFTCPKCGED 141 (176)
T ss_pred hCCCCCCCCch
Confidence 34999999985
No 196
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=31.47 E-value=4.2e+02 Score=24.41 Aligned_cols=15 Identities=7% Similarity=0.000 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 015122 181 EEIKLKAQELRERAR 195 (413)
Q Consensus 181 eEk~~k~~el~~k~r 195 (413)
++|+..+..-...+.
T Consensus 54 ~~R~~~I~~~l~~Ae 68 (184)
T CHL00019 54 DNRKQTILNTIRNSE 68 (184)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555444444443
No 197
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=31.34 E-value=26 Score=27.85 Aligned_cols=29 Identities=34% Similarity=0.805 Sum_probs=19.5
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
++.+|.+||.. ...|+-. .-.-+|..||.
T Consensus 18 l~VkCpdC~N~---------------q~vFsha---st~V~C~~CG~ 46 (67)
T COG2051 18 LRVKCPDCGNE---------------QVVFSHA---STVVTCLICGT 46 (67)
T ss_pred EEEECCCCCCE---------------EEEeccC---ceEEEeccccc
Confidence 47899999864 3445554 22348999996
No 198
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=31.34 E-value=3.9e+02 Score=24.00 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 015122 181 EEIKLKAQELRERARKK 197 (413)
Q Consensus 181 eEk~~k~~el~~k~r~~ 197 (413)
+++...+..-.+.+...
T Consensus 38 ~~R~~~I~~~l~~Ae~~ 54 (164)
T PRK14473 38 NERTRRIEESLRDAEKV 54 (164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555544433
No 199
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=30.88 E-value=1.1e+02 Score=29.12 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 115 KELLKELEAMGFPVARATRALHYS 138 (413)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~t 138 (413)
.++++.|.++||++..|.+|+...
T Consensus 153 ~ea~~AL~~LGy~~~ea~~al~~i 176 (197)
T PRK14603 153 EDAVLALLALGFREAQVRSVVAEL 176 (197)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 578999999999999999999764
No 200
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=30.82 E-value=3.3e+02 Score=25.61 Aligned_cols=39 Identities=28% Similarity=0.455 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015122 226 IEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAER 264 (413)
Q Consensus 226 ~~ee~e~k~~~e~rkrEK~e~~~ar~ri~~qIe~Dk~eR 264 (413)
..+..++-+.+.+.|.+..+.+..+..|++-|+.-+..+
T Consensus 50 ~~ek~erdr~Ln~qr~~~~~~K~~~AqikQlI~~~~i~~ 88 (177)
T PF09831_consen 50 RAEKAERDRELNRQRQAEAERKEIQAQIKQLIEQNRIPR 88 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344555666777777777888888889999888776544
No 201
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=30.74 E-value=50 Score=36.09 Aligned_cols=48 Identities=25% Similarity=0.542 Sum_probs=28.0
Q ss_pred eeecCccccccc-chHHHHHHHhhhccCCCCcc--hhhh--hhcccCCCCCCCC
Q 015122 5 SLKCGDCGALLR-SVQEAQEHAELTSHSNFSES--TEAV--LNLVCATCGKPCR 53 (413)
Q Consensus 5 ~l~C~~C~~~~~-~~~~aq~h~~~tgh~~F~e~--~e~~--~~~~C~~C~~~~~ 53 (413)
...|.+||..++ +.---..++. .+|.+++.. ++.+ -+.+||.||.+..
T Consensus 88 lv~c~~c~~~yRADHLiEe~l~~-~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~ 140 (558)
T COG0423 88 LVECKKCGERYRADHLIEEYLGK-DGHGNMSPEELTEIIREYDIRCPECGGELN 140 (558)
T ss_pred eeeccccchhhhhhHHHHHHhhh-cccccCCHHHHHHHHHHcCCcCCCcCCccC
Confidence 478999999984 2222222222 335555554 2222 3579999998753
No 202
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=30.45 E-value=27 Score=26.91 Aligned_cols=14 Identities=36% Similarity=0.895 Sum_probs=11.6
Q ss_pred CCceeecCcccccc
Q 015122 2 AGVSLKCGDCGALL 15 (413)
Q Consensus 2 ~~~~l~C~~C~~~~ 15 (413)
+.|+|+|..||...
T Consensus 28 aDikikC~gCg~~i 41 (57)
T PF06107_consen 28 ADIKIKCLGCGRQI 41 (57)
T ss_pred CcEEEEECCCCCEE
Confidence 46899999999865
No 203
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=30.44 E-value=5.9e+02 Score=28.35 Aligned_cols=76 Identities=21% Similarity=0.180 Sum_probs=42.0
Q ss_pred HHHHHHHHhCC-------CCHHHHHHHHHHhCCC---CHHHHHHHHHHhcCCCCCCC-----CCCCCCCCCCCCCCCCCC
Q 015122 115 KELLKELEAMG-------FPVARATRALHYSGNA---NVEAAVNWVVEHENDPDIDE-----MPMVPVSGGGGASKSSLT 179 (413)
Q Consensus 115 ~~~l~~L~~MG-------F~~~~a~kAL~~tgn~---~~E~A~~Wl~~h~dd~d~d~-----p~~~~~~~~~~~~k~~lT 179 (413)
-+.|..||.|- |+..++.++++-.--. =.+.-..|+. ++.-|-+. |...+.... + -.||
T Consensus 206 ~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~--~d~~d~~~~~~qlP~~evl~~~---e-~~l~ 279 (645)
T KOG0681|consen 206 GDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILE--MDYYDENRNYFQLPYTEVLAEV---E-LALT 279 (645)
T ss_pred HHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhh--hhhhhccceEEecccccccchh---h-hhcc
Confidence 46799999995 7778899887654322 2455667776 44433222 222111000 1 2466
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 015122 180 PEEIKLKAQELRERARKKK 198 (413)
Q Consensus 180 ~eEk~~k~~el~~k~r~~r 198 (413)
.|.|++ +.|+++++.+|
T Consensus 280 Ae~kqe--kRlq~~a~lkr 296 (645)
T KOG0681|consen 280 AEKKQE--KRLQEQAALKR 296 (645)
T ss_pred HHHHHH--HHHHHHHHHhh
Confidence 666666 44455544444
No 204
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=30.37 E-value=4.3e+02 Score=24.21 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhccCCCC
Q 015122 392 AVLNSAGSELTSAINNPFFG 411 (413)
Q Consensus 392 ~~L~~A~~~L~~Al~~p~fg 411 (413)
.+|......+..-+..=.||
T Consensus 168 ~rl~~~~~~~~~~i~~~LF~ 187 (188)
T PRK02292 168 SILEDVWEDNLKEISDRLFG 187 (188)
T ss_pred HHHHHHHHHhhHHHHHHhcC
Confidence 57888888888888887777
No 205
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=30.30 E-value=14 Score=37.43 Aligned_cols=45 Identities=27% Similarity=0.547 Sum_probs=29.6
Q ss_pred CceeecCcccccccchHHHHHHHhhhccCCCCcchhhh---hhcccCCCCCC
Q 015122 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAV---LNLVCATCGKP 51 (413)
Q Consensus 3 ~~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~---~~~~C~~C~~~ 51 (413)
.+.|+|.-||++++.--.. .--||..-.|+.++. .||.||.|..+
T Consensus 272 ~i~LkCplc~~Llrnp~kT----~cC~~~fc~eci~~al~dsDf~CpnC~rk 319 (427)
T COG5222 272 NISLKCPLCHCLLRNPMKT----PCCGHTFCDECIGTALLDSDFKCPNCSRK 319 (427)
T ss_pred CccccCcchhhhhhCcccC----ccccchHHHHHHhhhhhhccccCCCcccc
Confidence 4679999999998543221 224666656664322 36999999864
No 206
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=30.15 E-value=5.6e+02 Score=30.33 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=23.1
Q ss_pred HHHHhCCCCHHHH------HHHHHHhCCCCHHHHHHHHHHhcCC
Q 015122 119 KELEAMGFPVARA------TRALHYSGNANVEAAVNWVVEHEND 156 (413)
Q Consensus 119 ~~L~~MGF~~~~a------~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (413)
+..+.|=|..++. -+|++..|. ...|+.|+.--...
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~--~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGK--LQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHh
Confidence 4445554544333 377777664 99999998866555
No 207
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=30.13 E-value=34 Score=30.70 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=11.5
Q ss_pred cCCCCcchhhhhhcccCCCCCC
Q 015122 30 HSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 30 h~~F~e~~e~~~~~~C~~C~~~ 51 (413)
|.+|=.. -.||.||++
T Consensus 37 ~v~~PPr------~~Cp~C~~~ 52 (140)
T COG1545 37 RVYFPPR------AYCPKCGSE 52 (140)
T ss_pred eEEcCCc------ccCCCCCCC
Confidence 5566554 489999986
No 208
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=29.82 E-value=1.3e+02 Score=28.42 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 115 KELLKELEAMGFPVARATRALHYS 138 (413)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~t 138 (413)
.++++.|+++||++..|.+|+..-
T Consensus 150 ~e~~~aL~~LGy~~~ea~~ai~~i 173 (195)
T PRK14604 150 RELSEILISLGYSAAEAAAAIAAL 173 (195)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 578999999999999999998764
No 209
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=29.45 E-value=1.8e+02 Score=27.68 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 015122 222 EAKRIEEENERKRILALRKAEK 243 (413)
Q Consensus 222 ~~k~~~ee~e~k~~~e~rkrEK 243 (413)
.+++++++..-++.++.+.+++
T Consensus 87 aAR~RmQEE~dakA~~~kEKq~ 108 (190)
T PF06936_consen 87 AARRRMQEELDAKAEEYKEKQK 108 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333
No 210
>PLN03086 PRLI-interacting factor K; Provisional
Probab=29.38 E-value=4.2e+02 Score=29.46 Aligned_cols=8 Identities=13% Similarity=0.497 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 015122 254 RQKLEEDK 261 (413)
Q Consensus 254 ~~qIe~Dk 261 (413)
.+|+++|.
T Consensus 57 ~~~~~~~~ 64 (567)
T PLN03086 57 EAQIKADQ 64 (567)
T ss_pred HHHHHHHH
Confidence 34444443
No 211
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=28.82 E-value=29 Score=27.98 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHhCCCCHHHHHHHHHHhcC
Q 015122 127 PVARATRALHYSGNANVEAAVNWVVEHEN 155 (413)
Q Consensus 127 ~~~~a~kAL~~tgn~~~E~A~~Wl~~h~d 155 (413)
|....+.||.+... +++.|++||++...
T Consensus 45 ~e~~i~eal~~~~f-DvekAl~~Ll~~~~ 72 (79)
T PF08938_consen 45 PEEQIKEALWHYYF-DVEKALDYLLSKFK 72 (79)
T ss_dssp -CCHHHHHHHHTTT--CCHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHcC-CHHHHHHHHHHhcc
Confidence 77888899988876 99999999998543
No 212
>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Probab=28.76 E-value=22 Score=30.85 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=23.3
Q ss_pred hcccCCCCCCCCCccccccccccccccccccchh
Q 015122 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTS 75 (413)
Q Consensus 42 ~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~ 75 (413)
...||.||.. |+.-+..+++.+.-|.+++
T Consensus 72 ~~~CpkCg~~-----ea~y~~~QtRsaDEp~T~F 100 (113)
T COG1594 72 KEKCPKCGNK-----EAYYWQLQTRSADEPETRF 100 (113)
T ss_pred cccCCCCCCc-----eeEEEeeehhccCCCceEE
Confidence 5789999974 6788899999888777654
No 213
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=28.64 E-value=5.7e+02 Score=26.03 Aligned_cols=6 Identities=17% Similarity=0.507 Sum_probs=2.7
Q ss_pred CCCCCC
Q 015122 155 NDPDID 160 (413)
Q Consensus 155 dd~d~d 160 (413)
.+++.+
T Consensus 197 ~~~q~~ 202 (294)
T KOG4571|consen 197 ASPQSN 202 (294)
T ss_pred CCcccc
Confidence 444444
No 214
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=28.63 E-value=4.7e+02 Score=24.05 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 015122 180 PEEIKLKAQELRERARKKK 198 (413)
Q Consensus 180 ~eEk~~k~~el~~k~r~~r 198 (413)
-++|+.++..-.+.+.+.+
T Consensus 56 L~~R~~~I~~~l~~Ae~~~ 74 (184)
T PRK13455 56 LDKRAEGIRSELEEARALR 74 (184)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666665555554443
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=28.32 E-value=28 Score=37.11 Aligned_cols=31 Identities=29% Similarity=0.257 Sum_probs=24.4
Q ss_pred eecCcccccc---cchHHHHHHHhhhccCCCCcc
Q 015122 6 LKCGDCGALL---RSVQEAQEHAELTSHSNFSES 36 (413)
Q Consensus 6 l~C~~C~~~~---~~~~~aq~h~~~tgh~~F~e~ 36 (413)
..|..||.++ +-..-|+.|=++|||.+-=+-
T Consensus 241 wicliCg~vgcgrY~eghA~rHweet~H~yalel 274 (493)
T KOG0804|consen 241 WICLICGNVGCGRYKEGHARRHWEETGHCYALEL 274 (493)
T ss_pred EEEEEccceecccccchhHHHHHHhhcceEEEee
Confidence 4677788877 445669999999999987664
No 216
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=28.21 E-value=34 Score=23.57 Aligned_cols=13 Identities=31% Similarity=1.094 Sum_probs=9.0
Q ss_pred CceeecCcccccc
Q 015122 3 GVSLKCGDCGALL 15 (413)
Q Consensus 3 ~~~l~C~~C~~~~ 15 (413)
+.+++|..||.++
T Consensus 23 g~~v~C~~C~~~f 35 (36)
T PF13717_consen 23 GRKVRCSKCGHVF 35 (36)
T ss_pred CcEEECCCCCCEe
Confidence 5567777777664
No 217
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=28.08 E-value=3.2e+02 Score=32.08 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=6.1
Q ss_pred HHHHHHHHHH
Q 015122 251 EKIRQKLEED 260 (413)
Q Consensus 251 ~ri~~qIe~D 260 (413)
.-|++||+.+
T Consensus 1156 ~~~leql~e~ 1165 (1189)
T KOG1265|consen 1156 LEVLEQLAEE 1165 (1189)
T ss_pred HHHHHHHHHh
Confidence 4566676655
No 218
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=28.01 E-value=37 Score=25.69 Aligned_cols=32 Identities=28% Similarity=0.681 Sum_probs=19.6
Q ss_pred CCceeecCcccccccchHHHHHHHhhhccCCCC--cchhhhhhcccCCCCC
Q 015122 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFS--ESTEAVLNLVCATCGK 50 (413)
Q Consensus 2 ~~~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~--e~~e~~~~~~C~~C~~ 50 (413)
+.+-|-|..|.. |.... +..+.+ .|+|+.||.
T Consensus 19 ~r~aLIC~~C~~----------------hNGla~~~~~~~i-~y~C~~Cg~ 52 (54)
T PF10058_consen 19 NRYALICSKCFS----------------HNGLAPKEEFEEI-QYRCPYCGA 52 (54)
T ss_pred CceeEECcccch----------------hhcccccccCCce-EEEcCCCCC
Confidence 356788888864 22222 222223 699999985
No 219
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=27.89 E-value=13 Score=28.82 Aligned_cols=12 Identities=33% Similarity=0.803 Sum_probs=9.0
Q ss_pred eecCcccccccc
Q 015122 6 LKCGDCGALLRS 17 (413)
Q Consensus 6 l~C~~C~~~~~~ 17 (413)
-+|..||+.+.+
T Consensus 8 ~~CtSCg~~i~~ 19 (59)
T PRK14890 8 PKCTSCGIEIAP 19 (59)
T ss_pred ccccCCCCcccC
Confidence 468889888754
No 220
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=27.85 E-value=74 Score=28.20 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=30.4
Q ss_pred ccCHHHHHHHH-hCCCCHHHHHHHHHHhCCCCHHHHHHHH
Q 015122 112 EVDKELLKELE-AMGFPVARATRALHYSGNANVEAAVNWV 150 (413)
Q Consensus 112 ~~~~~~l~~L~-~MGF~~~~a~kAL~~tgn~~~E~A~~Wl 150 (413)
.++++-+...+ .-|-|++.|.+||..+|+ ++-.|+--|
T Consensus 82 ~i~eeDIkLV~eQa~VsreeA~kAL~e~~G-DlaeAIm~L 120 (122)
T COG1308 82 DISEEDIKLVMEQAGVSREEAIKALEEAGG-DLAEAIMKL 120 (122)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHcCC-cHHHHHHHh
Confidence 46777777666 479999999999999998 777777554
No 221
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=27.71 E-value=7.5e+02 Score=26.14 Aligned_cols=10 Identities=0% Similarity=-0.074 Sum_probs=4.4
Q ss_pred HHHhhhccCC
Q 015122 330 TYIGNVAKNP 339 (413)
Q Consensus 330 ~~l~Ni~~~P 339 (413)
.|-.|++.+|
T Consensus 312 ~Iqr~~~~~~ 321 (387)
T PRK09510 312 AIQSKFYDAS 321 (387)
T ss_pred HHHHhccCCc
Confidence 3444554433
No 222
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=27.71 E-value=1.7e+02 Score=25.13 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=16.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 015122 195 RKKKEEEEKRMEREREKERIRIGKELLEAKRI 226 (413)
Q Consensus 195 r~~r~eeek~~~~e~E~~Rr~~gKe~~~~k~~ 226 (413)
|.++++++.+.+++-+++|.+..-.|.+.++-
T Consensus 52 R~K~E~~~q~r~rES~~Er~K~~~s~~~~q~L 83 (121)
T PF10669_consen 52 RSKKEEKRQKRNRESKRERQKFIWSMNKQQSL 83 (121)
T ss_pred HHHHHHHHHHHhhhhHHHHHhHHhhhhHHHHH
Confidence 44444444444555556666666555555444
No 223
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=27.71 E-value=24 Score=40.00 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=8.7
Q ss_pred hhcccCCCCCC
Q 015122 41 LNLVCATCGKP 51 (413)
Q Consensus 41 ~~~~C~~C~~~ 51 (413)
+-..||.||+.
T Consensus 474 ~p~~Cp~Cgs~ 484 (730)
T COG1198 474 IPQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCCC
Confidence 44799999974
No 224
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=27.65 E-value=5.7e+02 Score=24.73 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=7.3
Q ss_pred HHcCCeeecCCceE
Q 015122 369 ELCGFEKIEGGEFL 382 (413)
Q Consensus 369 ~a~GF~~~~~~~~l 382 (413)
+-+||....|+..|
T Consensus 217 ligGi~l~~g~~~i 230 (246)
T TIGR03321 217 LIGGIELTAGGHKL 230 (246)
T ss_pred hcCceEEEECCEEE
Confidence 34577765554333
No 225
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=27.26 E-value=33 Score=26.23 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=16.3
Q ss_pred cccCCCCCCCCCccccccccccccccccccc
Q 015122 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDK 73 (413)
Q Consensus 43 ~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~ 73 (413)
+.||.||.+- .......|.+..||=|
T Consensus 5 i~CP~CgnKT-----R~kir~DT~LkNfPly 30 (55)
T PF14205_consen 5 ILCPICGNKT-----RLKIREDTVLKNFPLY 30 (55)
T ss_pred EECCCCCCcc-----ceeeecCceecccccc
Confidence 4799998651 2334556667777744
No 226
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=27.20 E-value=6.8e+02 Score=25.52 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=8.8
Q ss_pred CHHHHHHHHhCCCCH
Q 015122 114 DKELLKELEAMGFPV 128 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~ 128 (413)
-+..|+-+.=|||-.
T Consensus 223 feayvqfmeykgfa~ 237 (445)
T KOG2891|consen 223 FEAYVQFMEYKGFAQ 237 (445)
T ss_pred HHHHHHHHHHHhHHH
Confidence 345566666677743
No 227
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=27.12 E-value=27 Score=28.57 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=20.2
Q ss_pred hcccCCCCCCCCCccccccccccccccccccchhccc
Q 015122 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAA 78 (413)
Q Consensus 42 ~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~ 78 (413)
+-.|+.||++ ... +.|.-||+-.+++.
T Consensus 78 ~~~C~vC~k~--------l~~--~~f~~~p~~~v~H~ 104 (109)
T PF10367_consen 78 STKCSVCGKP--------LGN--SVFVVFPCGHVVHY 104 (109)
T ss_pred CCCccCcCCc--------CCC--ceEEEeCCCeEEec
Confidence 3589999997 222 67999999877764
No 228
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=27.07 E-value=5e+02 Score=23.90 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhccCCCC
Q 015122 392 AVLNSAGSELTSAINNPFFG 411 (413)
Q Consensus 392 ~~L~~A~~~L~~Al~~p~fg 411 (413)
.+|......+...+..=.||
T Consensus 179 ~~l~~~~~~~~~~i~~~LF~ 198 (198)
T PRK03963 179 ARMERLESELRAKIAKALFG 198 (198)
T ss_pred HHHHHHHHHhHHHHHHHhcC
Confidence 57888888888887777776
No 229
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.97 E-value=7.5e+02 Score=26.94 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=9.2
Q ss_pred CCCHH---HHHHHHHHhCC
Q 015122 125 GFPVA---RATRALHYSGN 140 (413)
Q Consensus 125 GF~~~---~a~kAL~~tgn 140 (413)
||++. ++-|||+--++
T Consensus 72 gFDpeaLERaAKAlrein~ 90 (630)
T KOG0742|consen 72 GFDPEALERAAKALREINH 90 (630)
T ss_pred CCChHHHHHHHHHHHhhcc
Confidence 77774 55566654443
No 230
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.92 E-value=1.7e+02 Score=31.13 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhcC
Q 015122 256 KLEEDKAERRRRLG 269 (413)
Q Consensus 256 qIe~Dk~eR~~k~~ 269 (413)
+.+++.+.|+.|..
T Consensus 417 r~EakerkR~~K~~ 430 (440)
T KOG2357|consen 417 RKEAKERKRQAKKK 430 (440)
T ss_pred HHHHHHHHHHHHhc
Confidence 34555556655543
No 231
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=26.90 E-value=33 Score=26.53 Aligned_cols=28 Identities=25% Similarity=0.558 Sum_probs=22.6
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSN 32 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~ 32 (413)
.-|+|..||.++..+.+-..|.. -.|-+
T Consensus 16 ~~lrCPRC~~~FR~~K~Y~RHVN-KaH~~ 43 (65)
T COG4049 16 EFLRCPRCGMVFRRRKDYIRHVN-KAHGW 43 (65)
T ss_pred eeeeCCchhHHHHHhHHHHHHhh-HHhhh
Confidence 35899999999999999888877 44543
No 232
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.69 E-value=16 Score=33.58 Aligned_cols=12 Identities=42% Similarity=0.952 Sum_probs=7.3
Q ss_pred hhcccCCCCCCC
Q 015122 41 LNLVCATCGKPC 52 (413)
Q Consensus 41 ~~~~C~~C~~~~ 52 (413)
.-..|..||+++
T Consensus 67 ~PsYC~~CGkpy 78 (158)
T PF10083_consen 67 APSYCHNCGKPY 78 (158)
T ss_pred CChhHHhCCCCC
Confidence 345677777653
No 233
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.97 E-value=39 Score=26.70 Aligned_cols=11 Identities=55% Similarity=1.407 Sum_probs=9.0
Q ss_pred hhcccCCCCCC
Q 015122 41 LNLVCATCGKP 51 (413)
Q Consensus 41 ~~~~C~~C~~~ 51 (413)
..-.||.||++
T Consensus 6 ~~v~CP~Cgkp 16 (65)
T COG3024 6 ITVPCPTCGKP 16 (65)
T ss_pred ccccCCCCCCc
Confidence 34589999998
No 234
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=25.72 E-value=1.7e+02 Score=26.73 Aligned_cols=55 Identities=24% Similarity=0.348 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 015122 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKL 185 (413)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~d~p~~~~~~~~~~~~k~~lT~eEk~~ 185 (413)
..+...|.+.||...-..+| ++||..-..-.....+...+.+ ...+..|++|+..
T Consensus 24 ~~L~~~L~~aGF~~~eI~~A------------l~WL~~L~~~~~~~~~~~~~~~----~s~Riyt~~E~~~ 78 (155)
T PF04361_consen 24 DDLTRELSAAGFEDEEINKA------------LDWLEGLAELQEEEPPAQFASP----RSMRIYTPEEQEK 78 (155)
T ss_pred HHHHHHHHHcCCCHHHHHHH------------HHHHHHHHhccccccccccCCC----CceEecCHHHHHH
Confidence 35568899999998876664 5897643333211111111111 1346788887754
No 235
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=25.69 E-value=42 Score=37.85 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=22.4
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHH
Q 015122 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWV 150 (413)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl 150 (413)
+++..++.-|+.-||.+..+..||..+++.++++|++++
T Consensus 87 ~sn~qmlq~lv~ag~d~~~a~~al~~pns~sie~sie~~ 125 (1034)
T KOG0608|consen 87 ESNSQMLQGLVGAGNDRHMALGALATPNSRSIEASIETI 125 (1034)
T ss_pred ccchhhhHhhhhccccchhhhhhhcCCCccccchhhhcc
Confidence 445555555555555555555555555555555555554
No 236
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=25.50 E-value=16 Score=33.86 Aligned_cols=37 Identities=19% Similarity=0.420 Sum_probs=23.1
Q ss_pred cCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 8 CGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 8 C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
|.+||+-. -..+...|-=-+|+++- +.-|.|++||-+
T Consensus 1 CP~Cg~~~-----~~~~~~~~~IP~F~evi--i~sf~C~~CGyr 37 (163)
T TIGR00340 1 CPVCGSRT-----LKAVTYDYDIPYFGKIM--LSTYICEKCGYR 37 (163)
T ss_pred CCCCCCcc-----eEeeeEeccCCCcceEE--EEEEECCCCCCc
Confidence 88898641 01111234456799872 446999999975
No 237
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=25.26 E-value=79 Score=30.15 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 115 KELLKELEAMGFPVARATRALHYS 138 (413)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~t 138 (413)
+++++.|+++||++..|.+|+..-
T Consensus 145 ~ea~~AL~~LGy~~~ea~~al~~v 168 (196)
T PRK13901 145 KELEQSIVNMGFDRKLVNSAIKEI 168 (196)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 578999999999999999998653
No 238
>smart00355 ZnF_C2H2 zinc finger.
Probab=25.26 E-value=57 Score=18.95 Aligned_cols=20 Identities=30% Similarity=0.830 Sum_probs=14.8
Q ss_pred ecCcccccccchHHHHHHHh
Q 015122 7 KCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 7 ~C~~C~~~~~~~~~aq~h~~ 26 (413)
+|..|+..+.+...-+.|..
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 2 RCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCcchhCCHHHHHHHHH
Confidence 57788888877777777765
No 239
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=25.03 E-value=5.6e+02 Score=24.94 Aligned_cols=28 Identities=25% Similarity=0.157 Sum_probs=11.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015122 215 RIGKELLEAKRIEEENERKRILALRKAE 242 (413)
Q Consensus 215 ~~gKe~~~~k~~~ee~e~k~~~e~rkrE 242 (413)
++.+-+.+.+.+..+.+.+..++..+++
T Consensus 132 Kmpk~i~e~~~~~~kk~~~~~~~k~rke 159 (217)
T PF10147_consen 132 KMPKWIAEWKAKIAKKEAKAQAAKERKE 159 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333333
No 240
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=25.00 E-value=37 Score=23.64 Aligned_cols=12 Identities=17% Similarity=0.706 Sum_probs=9.3
Q ss_pred hhhcccCCCCCC
Q 015122 40 VLNLVCATCGKP 51 (413)
Q Consensus 40 ~~~~~C~~C~~~ 51 (413)
.++..||.|++.
T Consensus 3 ~i~v~CP~C~s~ 14 (36)
T PF03811_consen 3 KIDVHCPRCQST 14 (36)
T ss_pred cEeeeCCCCCCC
Confidence 356799999973
No 241
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=24.99 E-value=32 Score=36.29 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=32.4
Q ss_pred ecCcccccc---cchHHHHHHHhhhccCCCCcchhhhhhcccCCCCC
Q 015122 7 KCGDCGALL---RSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 7 ~C~~C~~~~---~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
-|..||+++ .++.-|-.|+..+||..|-... .....|-.|+-
T Consensus 30 ~CL~cg~~~~g~~~~~ha~~H~~~~~H~~~v~l~--t~~~yc~~~~~ 74 (440)
T cd02669 30 ACLVCGKYFQGRGKGSHAYTHSLEDNHHVFLNLE--TLKFYCLPDNY 74 (440)
T ss_pred EEcccCCeecCCCCCcHHHHHhhccCCCEEEECC--CCCEEEeCCCC
Confidence 699999664 2455799999999999887652 24578999986
No 242
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=24.97 E-value=60 Score=20.06 Aligned_cols=21 Identities=29% Similarity=0.790 Sum_probs=16.2
Q ss_pred eecCcccccccchHHHHHHHh
Q 015122 6 LKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~ 26 (413)
.+|..|+..+.....=..|..
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~ 22 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKR 22 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHC
T ss_pred CCCCccCCccCChhHHHHHhH
Confidence 578888888888877777764
No 243
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=24.94 E-value=45 Score=24.92 Aligned_cols=38 Identities=29% Similarity=0.573 Sum_probs=28.0
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCC-CcchhhhhhcccCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNF-SESTEAVLNLVCATCGK 50 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F-~e~~e~~~~~~C~~C~~ 50 (413)
-.|.|-+||.-+.=..+-|..-.+ ..| ++. -+|++|-+
T Consensus 3 k~l~C~dCg~~FvfTa~EQ~fy~e---Kgf~n~p------~RC~~CR~ 41 (49)
T PF13451_consen 3 KTLTCKDCGAEFVFTAGEQKFYAE---KGFDNEP------KRCPSCRQ 41 (49)
T ss_pred eeEEcccCCCeEEEehhHHHHHHh---cCCcCCC------ccCHHHHH
Confidence 468999999999877777877775 346 333 48999853
No 244
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=24.13 E-value=5.6e+02 Score=23.50 Aligned_cols=8 Identities=38% Similarity=0.219 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 015122 185 LKAQELRE 192 (413)
Q Consensus 185 ~k~~el~~ 192 (413)
.++.++++
T Consensus 75 ~eA~~~l~ 82 (184)
T PRK13455 75 EEAQTLLA 82 (184)
T ss_pred HHHHHHHH
Confidence 33333333
No 245
>PF04641 Rtf2: Rtf2 RING-finger
Probab=24.09 E-value=18 Score=35.54 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=32.4
Q ss_pred CceeecCcccccccchHHHHHHHhhhccCCCCcchhhhh-hcccCCCCCCC
Q 015122 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVL-NLVCATCGKPC 52 (413)
Q Consensus 3 ~~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~-~~~C~~C~~~~ 52 (413)
.....|.+++..+.|..-.--+.. +||+.=......+. +-.||.||+++
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~-cG~V~s~~alke~k~~~~Cp~c~~~f 160 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRP-CGCVFSEKALKELKKSKKCPVCGKPF 160 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcC-CCCEeeHHHHHhhcccccccccCCcc
Confidence 456788888888866555444444 77765444434444 56799999973
No 246
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.26 E-value=20 Score=29.30 Aligned_cols=35 Identities=29% Similarity=0.657 Sum_probs=21.4
Q ss_pred CCCceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 1 MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 1 ~~~~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
|.-++-+|..||..+.-++ .|.+. ..-.|+.||-+
T Consensus 8 MPtY~Y~c~~cg~~~dvvq------------~~~dd----plt~ce~c~a~ 42 (82)
T COG2331 8 MPTYSYECTECGNRFDVVQ------------AMTDD----PLTTCEECGAR 42 (82)
T ss_pred ccceEEeecccchHHHHHH------------hcccC----ccccChhhChH
Confidence 3457789999998764332 13333 22479999854
No 247
>PHA00616 hypothetical protein
Probab=22.75 E-value=44 Score=24.41 Aligned_cols=28 Identities=25% Similarity=0.598 Sum_probs=20.0
Q ss_pred eecCcccccccchHHHHHHHh-hhccCCC
Q 015122 6 LKCGDCGALLRSVQEAQEHAE-LTSHSNF 33 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~-~tgh~~F 33 (413)
-+|..||..+.-..+=..|.. .+||..|
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~ 30 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKL 30 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHHhcCCCcc
Confidence 379999999988888777764 2344433
No 248
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=22.66 E-value=93 Score=22.94 Aligned_cols=38 Identities=39% Similarity=0.667 Sum_probs=28.4
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
+..|..||. .....+=..|.. +-|.+ +. ..+.||-|..
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~-~~H~~--~~----~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCE-DEHRS--ES----KNVVCPICSS 39 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHH-hHCcC--CC----CCccCCCchh
Confidence 357999999 777788888988 66654 21 2479999975
No 249
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.65 E-value=51 Score=29.55 Aligned_cols=45 Identities=22% Similarity=0.476 Sum_probs=24.8
Q ss_pred eeecCcccccccc----hHHHHHHHhhhccCCCCcc-hhhhhhcccCCCCCC
Q 015122 5 SLKCGDCGALLRS----VQEAQEHAELTSHSNFSES-TEAVLNLVCATCGKP 51 (413)
Q Consensus 5 ~l~C~~C~~~~~~----~~~aq~h~~~tgh~~F~e~-~e~~~~~~C~~C~~~ 51 (413)
-+.|..||.+..= ....+.... .+..|.=. ....+--.|+.|+..
T Consensus 93 HliC~~CG~v~e~~~~~i~~~~~~~~--~~~Gf~i~~~~l~~~G~C~~C~~~ 142 (145)
T COG0735 93 HLICLDCGKVIEFEDDEIEALQEEIA--KKLGFKLKDHTLEIYGICPDCQAK 142 (145)
T ss_pred EEEecCCCCEEEecchhHHHHHHHHH--HhcCCeeeeeEEEEEEECcchHhh
Confidence 4789999999832 233343333 23345432 122333459999864
No 250
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=22.59 E-value=40 Score=30.24 Aligned_cols=13 Identities=38% Similarity=0.986 Sum_probs=11.3
Q ss_pred hhhhcccCCCCCC
Q 015122 39 AVLNLVCATCGKP 51 (413)
Q Consensus 39 ~~~~~~C~~C~~~ 51 (413)
.+++..||.||.|
T Consensus 25 kML~~hCp~Cg~P 37 (131)
T COG1645 25 KMLAKHCPKCGTP 37 (131)
T ss_pred HHHHhhCcccCCc
Confidence 4788999999986
No 251
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=22.45 E-value=9.5e+02 Score=25.54 Aligned_cols=21 Identities=5% Similarity=0.032 Sum_probs=10.6
Q ss_pred hccCCCccccccccccchhhh
Q 015122 335 VAKNPNEEKFRKIRLSNQTFQ 355 (413)
Q Consensus 335 i~~~P~e~KfRrIr~~N~~f~ 355 (413)
++.||.=++-.++.+=+..|.
T Consensus 312 ~L~~p~i~~~~K~~ll~~l~~ 332 (445)
T PRK13428 312 LLSDYTVPADGRVALLRKVLG 332 (445)
T ss_pred HHhCCCCCHHHHHHHHHHHHh
Confidence 555555555555544444443
No 252
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=22.38 E-value=3.9e+02 Score=28.66 Aligned_cols=57 Identities=28% Similarity=0.378 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 015122 204 RMEREREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDK 261 (413)
Q Consensus 204 ~~~~e~E~~Rr~~gKe~~~~k~~~ee~e~k~~~e~rkrEK~e~~~ar~ri~~qIe~Dk 261 (413)
-++++|-.+-+|.-|.|++-++ .+-+...+.+++-+++|++....-+-+.++|++-.
T Consensus 15 deEik~Al~GvKqMK~~Mek~e-eeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e 71 (436)
T PF01093_consen 15 DEEIKNALNGVKQMKTMMEKTE-EEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEE 71 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677788888888887444 34445666688888888887777777777776653
No 253
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=22.35 E-value=5.2e+02 Score=22.44 Aligned_cols=11 Identities=18% Similarity=0.148 Sum_probs=5.5
Q ss_pred CCCCHHHHHHH
Q 015122 176 SSLTPEEIKLK 186 (413)
Q Consensus 176 ~~lT~eEk~~k 186 (413)
+.+|.=|+..+
T Consensus 28 ~~~tSwekr~~ 38 (108)
T PF03879_consen 28 KKRTSWEKRME 38 (108)
T ss_pred cccCcHHHHHH
Confidence 34555555443
No 254
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=22.28 E-value=6e+02 Score=23.12 Aligned_cols=8 Identities=13% Similarity=0.376 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 015122 186 KAQELRER 193 (413)
Q Consensus 186 k~~el~~k 193 (413)
++.+++++
T Consensus 67 eA~~~~~e 74 (175)
T PRK14472 67 EAEAILRK 74 (175)
T ss_pred HHHHHHHH
Confidence 33333333
No 255
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=22.21 E-value=5.5e+02 Score=22.69 Aligned_cols=18 Identities=6% Similarity=0.121 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 015122 181 EEIKLKAQELRERARKKK 198 (413)
Q Consensus 181 eEk~~k~~el~~k~r~~r 198 (413)
+++..++.+-...+.+.+
T Consensus 37 ~~R~~~I~~~l~~A~~~~ 54 (141)
T PRK08476 37 DNRNASIKNDLEKVKTNS 54 (141)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666655554443
No 256
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=22.06 E-value=7.1e+02 Score=28.13 Aligned_cols=36 Identities=31% Similarity=0.455 Sum_probs=17.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 015122 190 LRERARKKKEEEEKRMEREREKERIRIGKELLEAKR 225 (413)
Q Consensus 190 l~~k~r~~r~eeek~~~~e~E~~Rr~~gKe~~~~k~ 225 (413)
.+++...++-+.++..+..+...|-+.+|.+.+..+
T Consensus 287 ~Rer~~~Ke~eke~~ke~~r~~~~~ke~kr~k~~~e 322 (668)
T KOG2253|consen 287 IREQTKEKEREKERLKEKSRQYKREKEAKRLKEFLE 322 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 333333333344444444445555566666555444
No 257
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=21.92 E-value=1.8e+02 Score=29.98 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=35.2
Q ss_pred cCHHHHHHHH-hCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 113 VDKELLKELE-AMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (413)
Q Consensus 113 ~~~~~l~~L~-~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (413)
....++.+|- .-|++..-|++||-..|| |+..|..||-.-
T Consensus 45 ~~~allk~LR~kTgas~~ncKkALee~~g-Dl~~A~~~L~k~ 85 (340)
T KOG1071|consen 45 SSKALLKKLREKTGASMVNCKKALEECGG-DLVLAEEWLHKK 85 (340)
T ss_pred ccHHHHHHHHHHcCCcHHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence 4578888887 689999999999999997 999999999764
No 258
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=21.88 E-value=4.9e+02 Score=21.93 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 015122 251 EKIRQKLEEDKA 262 (413)
Q Consensus 251 ~ri~~qIe~Dk~ 262 (413)
+..+++|+.++.
T Consensus 98 ~~a~~~i~~e~~ 109 (132)
T PF00430_consen 98 EQAEAEIEQEKE 109 (132)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444544443
No 259
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=21.87 E-value=7.3e+02 Score=23.96 Aligned_cols=17 Identities=18% Similarity=0.020 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 015122 181 EEIKLKAQELRERARKK 197 (413)
Q Consensus 181 eEk~~k~~el~~k~r~~ 197 (413)
+++..++..-...+...
T Consensus 35 ~~R~~~I~~~l~~Ae~~ 51 (246)
T TIGR03321 35 DAREKKIAGELADADTK 51 (246)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555444333
No 260
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=21.76 E-value=7e+02 Score=23.70 Aligned_cols=6 Identities=17% Similarity=0.008 Sum_probs=2.2
Q ss_pred HHHHHH
Q 015122 187 AQELRE 192 (413)
Q Consensus 187 ~~el~~ 192 (413)
++++++
T Consensus 103 Ae~~~~ 108 (204)
T PRK09174 103 ADAAVA 108 (204)
T ss_pred HHHHHH
Confidence 333333
No 261
>PHA00451 protein kinase
Probab=21.73 E-value=4e+02 Score=27.24 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=25.5
Q ss_pred HHHhcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 015122 150 VVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQELRERA 194 (413)
Q Consensus 150 l~~h~dd~d~d~p~~~~~~~~~~~~k~~lT~eEk~~k~~el~~k~ 194 (413)
.|+.++-|-|.+|......-.-+.+ -||.|+|-.+.++.+..+.
T Consensus 201 Mf~~~g~p~ITDPVSFS~dr~re~G-F~ldPd~LiaEvEaia~~~ 244 (362)
T PHA00451 201 MFDQDGVPYITDPVSFSHDREREPG-FPLDPDELIAEVEAIANQR 244 (362)
T ss_pred eeCCCCCeEecCCccccCccccCCC-CCCCHHHHHHHHHHHHHHH
Confidence 3444444556665544332222322 5799999988877776543
No 262
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=21.61 E-value=57 Score=32.23 Aligned_cols=16 Identities=19% Similarity=0.603 Sum_probs=12.8
Q ss_pred ceeecCcccccccchH
Q 015122 4 VSLKCGDCGALLRSVQ 19 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~ 19 (413)
++.+|..||+......
T Consensus 121 ~~~~C~~C~~~~~~~~ 136 (250)
T COG0846 121 KRVRCSKCGNQYYDED 136 (250)
T ss_pred eeeEeCCCcCccchhh
Confidence 5689999999887655
No 263
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=21.58 E-value=56 Score=25.62 Aligned_cols=9 Identities=67% Similarity=1.582 Sum_probs=8.0
Q ss_pred cccCCCCCC
Q 015122 43 LVCATCGKP 51 (413)
Q Consensus 43 ~~C~~C~~~ 51 (413)
..||.||++
T Consensus 7 v~CP~C~k~ 15 (62)
T PRK00418 7 VNCPTCGKP 15 (62)
T ss_pred ccCCCCCCc
Confidence 689999996
No 264
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=21.47 E-value=49 Score=37.15 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=21.3
Q ss_pred eecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
-.|..||.++ +-.|..+..++.--.||.|+++|
T Consensus 293 y~C~KC~~vl--------------gPF~qs~n~evkp~~C~~cqSkG 325 (854)
T KOG0477|consen 293 YDCLKCGFVL--------------GPFVQSSNSEVKPGSCPECQSKG 325 (854)
T ss_pred hhHHhhCCcc--------------CceeeccCceeCCCCCccccCCC
Confidence 4588888655 44444444445557899998763
No 265
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=21.32 E-value=1.1e+03 Score=25.68 Aligned_cols=87 Identities=31% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 015122 183 IKLKAQELRERARKKKEEEEKRMEREREKERIRIGKELL-EAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDK 261 (413)
Q Consensus 183 k~~k~~el~~k~r~~r~eeek~~~~e~E~~Rr~~gKe~~-~~k~~~ee~e~k~~~e~rkrEK~e~~~ar~ri~~qIe~Dk 261 (413)
...-..+|.++..+.......+-+.+++..+.+...++. +++++.+..+.+-.-+-+.+..+-.+..-+.|..+|+..|
T Consensus 294 ~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er 373 (582)
T PF09731_consen 294 REELEQELEEKRAELEEELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKVEQER 373 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhcC
Q 015122 262 AERRRRLG 269 (413)
Q Consensus 262 ~eR~~k~~ 269 (413)
..|..+++
T Consensus 374 ~~~~~~l~ 381 (582)
T PF09731_consen 374 NGRLAKLA 381 (582)
T ss_pred HHHHHHHH
No 266
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=21.32 E-value=5.5e+02 Score=26.68 Aligned_cols=7 Identities=14% Similarity=-0.145 Sum_probs=3.2
Q ss_pred HHHcCCe
Q 015122 368 LELCGFE 374 (413)
Q Consensus 368 L~a~GF~ 374 (413)
+...|+.
T Consensus 313 rr~~~~r 319 (361)
T KOG3634|consen 313 RRNFGDR 319 (361)
T ss_pred hhhccch
Confidence 4444544
No 267
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.25 E-value=50 Score=28.71 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=8.8
Q ss_pred hhhcccCCCCCC
Q 015122 40 VLNLVCATCGKP 51 (413)
Q Consensus 40 ~~~~~C~~C~~~ 51 (413)
|-+++|++|+..
T Consensus 18 VTeL~c~~~etT 29 (122)
T COG3877 18 VTELKCSNCETT 29 (122)
T ss_pred eEEEecCCCCce
Confidence 556888888864
No 268
>KOG2989 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.16 E-value=42 Score=33.10 Aligned_cols=16 Identities=31% Similarity=0.852 Sum_probs=12.6
Q ss_pred CCCceeecCccccccc
Q 015122 1 MAGVSLKCGDCGALLR 16 (413)
Q Consensus 1 ~~~~~l~C~~C~~~~~ 16 (413)
|.-|+|+|+.||....
T Consensus 36 m~Pf~~rC~tCgeyi~ 51 (253)
T KOG2989|consen 36 MTPFRLRCNTCGEYIY 51 (253)
T ss_pred cccceeecccccchhh
Confidence 4568999999997763
No 269
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=21.13 E-value=54 Score=31.13 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=11.8
Q ss_pred CceeecCcccccccch
Q 015122 3 GVSLKCGDCGALLRSV 18 (413)
Q Consensus 3 ~~~l~C~~C~~~~~~~ 18 (413)
-..++|..|+......
T Consensus 107 ~~~~~C~~C~~~~~~~ 122 (224)
T cd01412 107 LFRVRCSSCGYVGENN 122 (224)
T ss_pred cCccccCCCCCCCCcc
Confidence 3578999999876443
No 270
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.04 E-value=4.2e+02 Score=27.06 Aligned_cols=47 Identities=15% Similarity=0.079 Sum_probs=25.4
Q ss_pred HHHHHHHhhhccCCC------ccccccccccchh-----hhhhccCcccHHHHHHHcCCe
Q 015122 326 QTLLTYIGNVAKNPN------EEKFRKIRLSNQT-----FQDRVGALKGGLEFLELCGFE 374 (413)
Q Consensus 326 ~tL~~~l~Ni~~~P~------e~KfRrIr~~N~~-----f~~kV~~~~ga~e~L~a~GF~ 374 (413)
...+.+|-=++-.|- -+=||-.|.++.- |=--+. .=+.-++.++||.
T Consensus 164 ~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~--q~~~~v~qAvgf~ 221 (313)
T KOG3088|consen 164 IFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFF--QIVFCVFQAVGFP 221 (313)
T ss_pred hhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHH--HHHHHHHHHHccC
Confidence 334555555666774 3677777776642 111111 1355667777775
No 271
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=20.82 E-value=1.3e+02 Score=22.36 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=18.1
Q ss_pred HHHHHHHHhC---CCCHHHHHHHHH
Q 015122 115 KELLKELEAM---GFPVARATRALH 136 (413)
Q Consensus 115 ~~~l~~L~~M---GF~~~~a~kAL~ 136 (413)
..+.+||.+- ||+.+.|..|+.
T Consensus 22 ~~l~~QL~se~ge~Ft~e~A~YAv~ 46 (48)
T PF07553_consen 22 QGLYDQLTSEYGEGFTEEEAQYAVD 46 (48)
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHH
Confidence 4678899876 899999998874
No 272
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=20.67 E-value=1.2e+02 Score=27.77 Aligned_cols=41 Identities=27% Similarity=0.591 Sum_probs=30.2
Q ss_pred ccCHHHHHHHHhCCCCH-HHHHHHHHHhCCC----CHHHHHHHHHH
Q 015122 112 EVDKELLKELEAMGFPV-ARATRALHYSGNA----NVEAAVNWVVE 152 (413)
Q Consensus 112 ~~~~~~l~~L~~MGF~~-~~a~kAL~~tgn~----~~E~A~~Wl~~ 152 (413)
-+.++++..|..+|||- ...+.+|.+-|.. .+=.|+.||.+
T Consensus 92 k~eeev~~~lK~L~YP~~~isKS~L~a~gs~hsWP~lL~~L~WLv~ 137 (157)
T PF03801_consen 92 KFEEEVPFLLKALGYPFATISKSSLQAPGSPHSWPHLLGALHWLVE 137 (157)
T ss_dssp THHHHHHHHHHHTT-SS----HHHHHSTTSTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCccccCHHHccCCCCcccHHHHHHHHHHHHH
Confidence 45678999999999999 9999999888864 36688999864
No 273
>PF09567 RE_MamI: MamI restriction endonuclease; InterPro: IPR019067 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MamI restriction endonuclease which recognises and cleaves GATNN^NNATC. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=20.58 E-value=53 Score=32.68 Aligned_cols=11 Identities=36% Similarity=0.960 Sum_probs=8.4
Q ss_pred hhcccCCCCCC
Q 015122 41 LNLVCATCGKP 51 (413)
Q Consensus 41 ~~~~C~~C~~~ 51 (413)
.+..||+||+.
T Consensus 95 ~e~~Cp~C~St 105 (314)
T PF09567_consen 95 LEESCPNCGST 105 (314)
T ss_pred hhhcCCCCCcc
Confidence 45689999963
No 274
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=20.46 E-value=60 Score=28.41 Aligned_cols=13 Identities=31% Similarity=0.894 Sum_probs=8.5
Q ss_pred CCceeecCccccc
Q 015122 2 AGVSLKCGDCGAL 14 (413)
Q Consensus 2 ~~~~l~C~~C~~~ 14 (413)
....++|..||++
T Consensus 66 kav~V~CP~C~K~ 78 (114)
T PF11023_consen 66 KAVQVECPNCGKQ 78 (114)
T ss_pred cceeeECCCCCCh
Confidence 3456777777764
No 275
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=20.44 E-value=67 Score=29.86 Aligned_cols=46 Identities=20% Similarity=0.393 Sum_probs=31.0
Q ss_pred eecCcccccccchHHHHHHHhhhccCCCCcc-hhhhh--hcccCCCCCC
Q 015122 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSES-TEAVL--NLVCATCGKP 51 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~-~e~~~--~~~C~~C~~~ 51 (413)
.+|..||..+........-++.-+|..|.+. .+... -+.||.|..+
T Consensus 115 ~~C~~Cg~~f~~~k~i~~~~~~l~~~~~~~~~~~~~~~~~~~Cp~Cr~k 163 (181)
T PRK08222 115 QRCSRCERPFAPQKTVALAAELLAQQQNAPQNREMLRAQASVCPECKQR 163 (181)
T ss_pred CcCcccCCccCcHhHHHHHHHHhhhccCcHhhHHHHHHHhccCHHHHhh
Confidence 4699999999877776666665677777654 23222 2579999754
No 276
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=20.28 E-value=5e+02 Score=28.01 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhhcCCchHHHHHHHHHHHHHHhhhccCCCccccccccccchhhhhhccCcccHHHHHHHcCC
Q 015122 302 QMRECLRSLKQNHKDDDAKVKRAFQTLLTYIGNVAKNPNEEKFRKIRLSNQTFQDRVGALKGGLEFLELCGF 373 (413)
Q Consensus 302 qlr~~L~slk~~~~~s~a~~~~a~~tL~~~l~Ni~~~P~e~KfRrIr~~N~~f~~kV~~~~ga~e~L~a~GF 373 (413)
.+|.+.|.-..-.|... ..+++|+-|+.+...+| ..|.-+. .|-++...-..-..-|...|-
T Consensus 387 ~iR~P~G~r~~RrF~~s----~~~q~l~~~v~~~~~~~--~e~~~~~----~fPr~~~~~~~~~~sl~~~~l 448 (460)
T KOG1363|consen 387 AIRLPSGTRLERRFLKS----DKLQILYDYVDSNGFHP--EEYSLNT----SFPRRPLGDYEHSSSLQDIGL 448 (460)
T ss_pred EEECCCCCeeeeeeecc----cchhHHHHHHHhccCCc--hhhcccc----CCCcccccccccccccccCCc
Confidence 34555555544444432 36677888887666333 3344443 255555444343444444443
No 277
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.20 E-value=3.4e+02 Score=28.99 Aligned_cols=9 Identities=22% Similarity=0.158 Sum_probs=5.6
Q ss_pred ccccccCCC
Q 015122 93 EEAIDVDMS 101 (413)
Q Consensus 93 ~~~ldl~~~ 101 (413)
.+-.||+.|
T Consensus 242 ke~~DLs~F 250 (440)
T KOG2357|consen 242 KEMRDLSRF 250 (440)
T ss_pred HHHHHHHHH
Confidence 455677765
No 278
>smart00030 CLb CLUSTERIN Beta chain.
Probab=20.12 E-value=6.3e+02 Score=24.37 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 015122 204 RMEREREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDK 261 (413)
Q Consensus 204 ~~~~e~E~~Rr~~gKe~~~~k~~~ee~e~k~~~e~rkrEK~e~~~ar~ri~~qIe~Dk 261 (413)
-.+++|-..=++.-|.|++-.. .+-..+.+.+++-+++|++....-.-+.+++++-.
T Consensus 21 d~EI~nAl~GvKqMK~~mer~~-eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~ 77 (206)
T smart00030 21 NKEIKNALKGVKQIKTLIEKTN-KERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQ 77 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777443 34455667788899999988888777777776654
No 279
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=20.09 E-value=6.6e+02 Score=22.74 Aligned_cols=8 Identities=38% Similarity=0.327 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 015122 186 KAQELRER 193 (413)
Q Consensus 186 k~~el~~k 193 (413)
.+.++++.
T Consensus 59 eAe~~~~~ 66 (167)
T PRK14475 59 EAQALLAD 66 (167)
T ss_pred HHHHHHHH
Confidence 34444333
No 280
>COG4481 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.09 E-value=56 Score=25.13 Aligned_cols=14 Identities=36% Similarity=0.990 Sum_probs=10.8
Q ss_pred CCceeecCcccccc
Q 015122 2 AGVSLKCGDCGALL 15 (413)
Q Consensus 2 ~~~~l~C~~C~~~~ 15 (413)
+..+++|..||.+.
T Consensus 31 aDIkikC~nC~h~v 44 (60)
T COG4481 31 ADIKIKCENCGHSV 44 (60)
T ss_pred CcEEEEecCCCcEE
Confidence 35688999998764
No 281
>PF09805 Nop25: Nucleolar protein 12 (25kDa); InterPro: IPR019186 Nop12 is a novel nucleolar protein required for pre-large subunit rRNA processing and in yeast normal rates of cell growth at low temperatures [].
Probab=20.05 E-value=3.6e+02 Score=24.06 Aligned_cols=8 Identities=25% Similarity=0.409 Sum_probs=3.1
Q ss_pred HHHHHhhH
Q 015122 211 KERIRIGK 218 (413)
Q Consensus 211 ~~Rr~~gK 218 (413)
..||+.++
T Consensus 32 ~~Rrk~Aq 39 (137)
T PF09805_consen 32 KQRRKKAQ 39 (137)
T ss_pred HHHHHHHH
Confidence 33444333
No 282
>PTZ00172 40S ribosomal protein S26; Provisional
Probab=20.04 E-value=77 Score=27.51 Aligned_cols=45 Identities=16% Similarity=0.445 Sum_probs=27.7
Q ss_pred eeecCcccccc--------------cchHHHHHHHhhhccCCCCcchhhhhhcccCCCC
Q 015122 5 SLKCGDCGALL--------------RSVQEAQEHAELTSHSNFSESTEAVLNLVCATCG 49 (413)
Q Consensus 5 ~l~C~~C~~~~--------------~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~ 49 (413)
.++|.+||+.. .+...+.++.++.--..|.=-.=-+.-+.|.+|-
T Consensus 20 ~V~C~nCgr~vPKDKAIkrf~irniVe~aa~rDl~~a~v~~~y~lPKly~k~~YCVSCA 78 (108)
T PTZ00172 20 PVRCSNCGRCVPKDKAIKRFVVRNIVDAASVRDIAEASVYYGYPLPKLYMKQQYCVSCA 78 (108)
T ss_pred cEEeCCccccccccceEEEEeccCCccHHHHHHHHHhhchhccccccceeeeEEeeehh
Confidence 58999999876 5666677777743322222211123346899995
Done!