Query 015122
Match_columns 413
No_of_seqs 382 out of 643
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 07:05:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ccq_A P97, peptide N-glycanas 99.8 1.1E-20 3.9E-25 158.1 9.6 94 304-403 4-97 (99)
2 2d5u_A N-glycanase 1; pngase, 99.8 9.5E-21 3.3E-25 164.4 9.2 98 300-403 15-112 (124)
3 3ihp_A Ubiquitin carboxyl-term 99.8 4.4E-21 1.5E-25 212.2 5.1 123 38-167 559-705 (854)
4 2crn_A Ubash3A protein; compac 99.7 8.2E-18 2.8E-22 130.1 6.5 58 111-168 6-63 (64)
5 1vek_A UBP14, ubiquitin-specif 99.6 2.9E-16 1E-20 127.6 7.9 59 110-168 25-83 (84)
6 2dag_A Ubiquitin carboxyl-term 99.6 3.3E-16 1.1E-20 124.4 7.6 59 110-168 5-63 (74)
7 1whc_A RSGI RUH-027, UBA/UBX 3 99.6 1.3E-15 4.4E-20 117.7 6.1 54 111-164 6-59 (64)
8 2dak_A Ubiquitin carboxyl-term 99.6 2E-15 6.8E-20 116.2 6.4 57 110-167 5-61 (63)
9 2dai_A Ubadc1, ubiquitin assoc 99.6 2.8E-15 9.4E-20 121.6 7.4 56 111-167 26-81 (83)
10 2lbc_A Ubiquitin carboxyl-term 99.5 8.9E-14 3E-18 120.6 9.3 55 112-166 1-55 (126)
11 2cpw_A CBL-interacting protein 99.4 6.9E-14 2.4E-18 108.0 4.4 46 113-158 18-63 (64)
12 1wgn_A UBAP1, ubiquitin associ 99.4 3.6E-13 1.2E-17 102.0 4.8 42 114-156 19-60 (63)
13 1wji_A Tudor domain containing 99.3 2.5E-12 8.6E-17 99.0 8.0 55 112-167 7-61 (63)
14 1wiv_A UBP14, ubiquitin-specif 99.2 9.6E-12 3.3E-16 98.4 6.2 48 110-158 25-72 (73)
15 2ekk_A UBA domain from E3 ubiq 99.2 6.7E-12 2.3E-16 90.9 4.7 43 110-154 5-47 (47)
16 1dv0_A DNA repair protein HHR2 99.2 3.6E-12 1.2E-16 92.6 2.1 45 113-158 3-47 (47)
17 2dkl_A Trinucleotide repeat co 99.2 4.9E-11 1.7E-15 96.9 7.6 52 111-163 18-69 (85)
18 2g3q_A Protein YBL047C; endocy 99.2 2.1E-11 7.1E-16 86.6 4.5 41 113-154 3-43 (43)
19 4ae4_A Ubiquitin-associated pr 99.2 1.1E-11 3.7E-16 106.7 3.1 50 112-162 6-57 (118)
20 2cos_A Serine/threonine protei 99.1 4.2E-11 1.4E-15 88.3 5.0 42 111-152 6-47 (54)
21 1veg_A NEDD8 ultimate buster-1 99.1 1.3E-10 4.5E-15 93.9 7.8 47 110-157 25-71 (83)
22 2lbc_A Ubiquitin carboxyl-term 99.1 1.5E-10 5.3E-15 100.1 6.0 48 112-160 76-124 (126)
23 1ify_A HHR23A, UV excision rep 99.0 2E-10 6.8E-15 84.0 4.8 41 112-153 6-46 (49)
24 2jy5_A Ubiquilin-1; UBA, alter 98.9 9.9E-10 3.4E-14 81.3 5.1 40 114-154 12-52 (52)
25 1vg5_A RSGI RUH-014, rhomboid 98.9 1.9E-09 6.6E-14 85.1 6.3 46 110-156 25-70 (73)
26 2knz_A Ubiquilin-4; cytoplasm, 98.9 1.8E-09 6.3E-14 80.1 5.7 39 115-154 12-51 (53)
27 1z96_A DNA-damage, UBA-domain 98.8 6.3E-09 2.1E-13 72.1 5.0 36 115-151 5-40 (40)
28 2bwb_A Ubiquitin-like protein 98.7 2E-08 6.9E-13 72.4 5.3 39 114-153 7-46 (46)
29 2dah_A Ubiquilin-3; UBA domain 98.7 2.2E-08 7.5E-13 74.6 5.6 42 114-156 9-51 (54)
30 2dna_A Unnamed protein product 98.7 1.8E-08 6.2E-13 78.2 5.0 42 115-157 20-62 (67)
31 1vej_A Riken cDNA 4931431F19; 98.6 3E-08 1E-12 78.5 5.5 43 114-157 29-72 (74)
32 1wr1_B Ubiquitin-like protein 98.6 4.5E-08 1.5E-12 74.0 5.3 39 115-154 18-57 (58)
33 4ae4_A Ubiquitin-associated pr 98.5 1.3E-07 4.6E-12 81.1 5.1 43 111-154 73-115 (118)
34 1oqy_A HHR23A, UV excision rep 98.3 1.7E-07 5.9E-12 94.7 2.7 45 112-157 166-210 (368)
35 2ooa_A E3 ubiquitin-protein li 98.3 1.6E-06 5.5E-11 63.6 6.0 42 111-153 8-49 (52)
36 2cwb_A Chimera of immunoglobul 98.1 3E-06 1E-10 71.6 5.9 41 114-155 66-107 (108)
37 2juj_A E3 ubiquitin-protein li 98.1 2.8E-06 9.5E-11 62.8 4.5 45 111-156 4-48 (56)
38 2d9s_A CBL E3 ubiquitin protei 98.1 6.5E-06 2.2E-10 60.6 6.3 44 111-155 6-49 (53)
39 1oqy_A HHR23A, UV excision rep 98.0 2.2E-06 7.6E-11 86.6 2.7 45 112-157 323-367 (368)
40 2oo9_A E3 ubiquitin-protein li 97.9 2.7E-05 9.4E-10 55.5 5.9 39 115-154 5-43 (46)
41 1wiv_A UBP14, ubiquitin-specif 97.6 3.6E-06 1.2E-10 66.3 -1.7 38 144-190 2-39 (73)
42 3i3t_A Ubiquitin carboxyl-term 97.6 8E-06 2.8E-10 79.3 0.2 52 43-101 227-284 (355)
43 2cp8_A NEXT to BRCA1 gene 1 pr 97.6 8.6E-05 2.9E-09 55.1 4.9 45 112-157 7-52 (54)
44 2ayn_A Ubiquitin carboxyl-term 97.5 7.6E-06 2.6E-10 81.6 -1.5 54 41-101 208-268 (404)
45 3ihp_A Ubiquitin carboxyl-term 97.5 6.1E-05 2.1E-09 83.5 4.6 46 111-157 717-762 (854)
46 3k9o_A Ubiquitin-conjugating e 97.4 0.00015 5.2E-09 67.1 5.6 38 115-153 164-201 (201)
47 3mhs_A Ubiquitin carboxyl-term 97.4 1.3E-05 4.6E-10 82.1 -1.8 52 43-101 339-396 (476)
48 2qsf_X RAD23, UV excision repa 97.4 0.00013 4.3E-09 66.3 4.3 43 113-156 129-171 (171)
49 3nhe_A Ubiquitin carboxyl-term 97.1 4.3E-05 1.5E-09 73.9 -1.4 52 43-101 217-274 (348)
50 1wj7_A Hypothetical protein (R 97.0 0.00074 2.5E-08 56.5 5.5 41 115-156 40-81 (104)
51 1vjv_A Ubiquitin carboxyl-term 97.0 0.00013 4.5E-09 73.3 0.4 54 41-101 200-260 (415)
52 2y6e_A Ubiquitin carboxyl-term 96.9 0.0001 3.5E-09 72.7 -0.8 52 43-101 232-289 (367)
53 2gfo_A Ubiquitin carboxyl-term 96.6 0.00025 8.5E-09 71.3 -0.6 52 43-101 269-326 (396)
54 1nb8_A Ubiquitin carboxyl-term 96.3 0.00081 2.8E-08 66.3 0.6 51 43-101 172-229 (353)
55 2f1z_A Ubiquitin carboxyl-term 95.8 0.002 6.7E-08 67.1 1.0 51 43-101 341-398 (522)
56 3e46_A Ubiquitin-conjugating e 95.2 0.023 7.9E-07 54.4 5.8 38 115-153 216-253 (253)
57 1wgl_A TOLL-interacting protei 94.0 0.093 3.2E-06 39.4 5.4 46 110-157 5-53 (59)
58 2cp9_A EF-TS, EF-TSMT, elongat 93.2 0.12 4.1E-06 39.5 4.9 43 111-154 6-49 (64)
59 1q02_A Sequestosome 1; helical 88.7 0.33 1.1E-05 35.5 3.1 34 116-150 12-47 (52)
60 2dhy_A CUE domain-containing p 88.0 0.48 1.7E-05 36.4 4.0 42 113-156 17-61 (67)
61 6rxn_A Rubredoxin; electron tr 85.9 0.31 1.1E-05 34.8 1.7 36 5-51 4-39 (46)
62 2drp_A Protein (tramtrack DNA- 85.2 0.3 1E-05 35.0 1.4 42 4-52 9-50 (66)
63 2dmi_A Teashirt homolog 3; zin 84.9 1.5 5E-05 34.8 5.6 43 4-52 18-60 (115)
64 1yk4_A Rubredoxin, RD; electro 83.9 0.23 7.8E-06 36.3 0.2 43 5-51 2-44 (52)
65 1bbo_A Human enhancer-binding 82.4 0.46 1.6E-05 32.8 1.4 38 6-52 2-39 (57)
66 1e8j_A Rubredoxin; iron-sulfur 82.1 0.3 1E-05 35.7 0.2 43 5-51 3-45 (52)
67 2eps_A POZ-, at HOOK-, and zin 81.8 2.4 8.1E-05 29.3 5.0 41 4-52 11-51 (54)
68 2ct1_A Transcriptional repress 81.3 0.86 3E-05 33.7 2.6 42 4-52 14-55 (77)
69 2kn9_A Rubredoxin; metalloprot 81.1 0.31 1.1E-05 38.9 -0.0 43 5-51 27-69 (81)
70 2v3b_B Rubredoxin 2, rubredoxi 80.8 0.28 9.7E-06 36.2 -0.3 43 5-51 3-45 (55)
71 2adr_A ADR1; transcription reg 79.5 1.1 3.9E-05 31.2 2.6 38 6-52 3-40 (60)
72 2yt9_A Zinc finger-containing 79.3 1.4 4.7E-05 33.6 3.3 22 5-26 7-28 (95)
73 1otr_A Protein CUE2; protein-p 79.1 3.6 0.00012 29.6 5.1 41 115-156 5-47 (49)
74 1s24_A Rubredoxin 2; electron 79.1 0.32 1.1E-05 39.3 -0.5 43 5-51 35-77 (87)
75 4gzn_C ZFP-57, zinc finger pro 78.4 0.8 2.7E-05 33.7 1.5 38 6-52 5-42 (60)
76 1dx8_A Rubredoxin; electron tr 77.6 0.39 1.3E-05 37.2 -0.5 43 5-51 7-49 (70)
77 3a43_A HYPD, hydrogenase nicke 77.5 1.6 5.3E-05 37.9 3.4 39 4-51 69-116 (139)
78 3rk3_E Complexin-1; snare prot 77.5 6 0.00021 29.5 6.0 35 223-257 11-46 (63)
79 1x5w_A Zinc finger protein 64, 77.4 1.3 4.3E-05 32.1 2.4 41 3-52 7-47 (70)
80 4rxn_A Rubredoxin; electron tr 77.3 0.53 1.8E-05 34.7 0.3 43 5-51 3-45 (54)
81 1xb2_B EF-TS, elongation facto 76.8 2 6.8E-05 41.8 4.2 39 113-152 3-42 (291)
82 2pwq_A Ubiquitin conjugating e 76.2 0.53 1.8E-05 43.9 0.0 37 115-152 178-214 (216)
83 2ghf_A ZHX1, zinc fingers and 73.2 1.6 5.5E-05 35.5 2.2 44 4-52 17-60 (102)
84 1x6h_A Transcriptional repress 72.3 2.2 7.4E-05 31.7 2.6 43 4-52 14-57 (86)
85 2wbt_A B-129; zinc finger; 2.7 71.6 1.9 6.4E-05 35.0 2.3 37 5-52 74-110 (129)
86 2k5c_A Uncharacterized protein 71.5 1.3 4.3E-05 35.5 1.1 43 6-51 9-60 (95)
87 2ctd_A Zinc finger protein 512 71.3 2.6 9E-05 33.2 3.0 42 5-56 34-76 (96)
88 1ixs_A Holliday junction DNA h 70.9 5.3 0.00018 29.9 4.4 26 113-138 16-41 (62)
89 2cot_A Zinc finger protein 435 70.1 2 6.7E-05 31.7 1.9 40 4-52 17-56 (77)
90 2dmd_A Zinc finger protein 64, 70.1 2.2 7.7E-05 32.4 2.3 21 6-26 9-29 (96)
91 1x6e_A Zinc finger protein 24; 70.0 2.4 8.2E-05 30.8 2.3 40 4-52 13-52 (72)
92 2kna_A Baculoviral IAP repeat- 69.9 7.6 0.00026 32.0 5.6 66 116-188 29-100 (104)
93 1aip_C EF-TS, elongation facto 69.5 3.8 0.00013 37.7 4.0 37 116-153 5-42 (196)
94 2lce_A B-cell lymphoma 6 prote 69.5 1.9 6.6E-05 31.5 1.7 40 4-52 16-55 (74)
95 2lv2_A Insulinoma-associated p 69.0 2.1 7.2E-05 33.6 1.9 38 6-52 29-66 (85)
96 2d9h_A Zinc finger protein 692 68.7 2.6 9E-05 31.0 2.3 44 3-52 5-48 (78)
97 3uk3_C Zinc finger protein 217 68.5 1.6 5.4E-05 29.9 1.0 39 5-52 4-42 (57)
98 2eod_A TNF receptor-associated 68.5 2.4 8.1E-05 30.4 2.0 37 5-52 10-47 (66)
99 2epq_A POZ-, at HOOK-, and zin 68.2 4.6 0.00016 26.3 3.3 37 4-49 9-45 (45)
100 2ida_A Hypothetical protein; z 67.8 1.7 5.7E-05 36.0 1.1 41 7-50 36-83 (102)
101 1kil_E Complexin I snare-compl 67.3 6.2 0.00021 28.2 3.8 32 226-257 11-43 (49)
102 1a1h_A QGSR zinc finger peptid 67.2 2.3 7.7E-05 31.9 1.7 9 43-51 63-71 (90)
103 1tr8_A Conserved protein (MTH1 66.2 6.8 0.00023 32.3 4.5 39 111-150 62-101 (102)
104 2gqj_A Zinc finger protein KIA 65.9 2.8 9.6E-05 32.7 2.1 41 4-52 23-64 (98)
105 1tte_A Ubiquitin-conjugating e 65.8 4 0.00014 37.8 3.4 29 112-140 167-195 (215)
106 2epr_A POZ-, at HOOK-, and zin 65.7 7.5 0.00026 25.7 4.0 38 4-50 11-48 (48)
107 2kmk_A Zinc finger protein GFI 64.7 2.3 7.7E-05 31.2 1.3 20 7-26 3-22 (82)
108 2rpc_A Zinc finger protein ZIC 63.9 3.7 0.00013 34.1 2.6 53 3-56 23-76 (155)
109 2ej4_A Zinc finger protein ZIC 63.2 3.7 0.00013 31.1 2.3 48 5-53 25-73 (95)
110 2kdx_A HYPA, hydrogenase/ureas 62.3 3.4 0.00012 34.5 2.0 27 4-51 72-99 (119)
111 2dlq_A GLI-kruppel family memb 61.5 3.2 0.00011 32.8 1.7 22 5-26 7-28 (124)
112 2ee8_A Protein ODD-skipped-rel 60.9 5.7 0.0002 30.7 3.1 21 6-26 18-38 (106)
113 2ee8_A Protein ODD-skipped-rel 60.6 4.9 0.00017 31.1 2.6 45 5-58 45-89 (106)
114 1vd4_A Transcription initiatio 59.0 7.9 0.00027 27.5 3.3 37 4-52 13-49 (62)
115 1wjp_A Zinc finger protein 295 58.6 5.7 0.0002 31.0 2.7 40 5-55 16-55 (107)
116 1llm_C Chimera of ZIF23-GCN4; 57.6 3.3 0.00011 31.3 1.0 41 6-55 4-44 (88)
117 1wjp_A Zinc finger protein 295 54.9 3.8 0.00013 32.0 1.0 40 6-55 43-82 (107)
118 2csh_A Zinc finger protein 297 54.7 4.5 0.00015 31.6 1.5 21 5-26 10-30 (110)
119 2yt9_A Zinc finger-containing 54.4 6.1 0.00021 29.8 2.2 45 4-55 34-78 (95)
120 2dmd_A Zinc finger protein 64, 53.3 4.9 0.00017 30.4 1.4 42 5-55 36-77 (96)
121 3c5k_A HD6, histone deacetylas 52.2 4.7 0.00016 33.5 1.2 42 7-50 38-82 (109)
122 2ve7_A Kinetochore protein HEC 52.0 1.1E+02 0.0039 29.4 11.3 41 112-152 68-112 (315)
123 2dlq_A GLI-kruppel family memb 51.4 6.8 0.00023 30.9 2.0 45 5-55 35-79 (124)
124 2csh_A Zinc finger protein 297 47.5 9.5 0.00033 29.6 2.3 39 5-52 37-75 (110)
125 1twf_L ABC10-alpha, DNA-direct 46.7 13 0.00045 28.5 2.9 12 4-15 27-38 (70)
126 4efa_E V-type proton ATPase su 45.8 1.7E+02 0.006 26.5 14.2 22 176-197 6-27 (233)
127 2eop_A Zinc finger protein 268 45.2 22 0.00074 22.8 3.5 36 4-48 11-46 (46)
128 2ema_A Zinc finger protein 347 44.4 26 0.00089 22.5 3.9 36 4-48 11-46 (46)
129 2emy_A Zinc finger protein 268 44.4 25 0.00087 22.5 3.8 36 4-48 11-46 (46)
130 2em0_A Zinc finger protein 224 44.3 24 0.00083 22.6 3.7 35 5-48 12-46 (46)
131 2lt7_A Transcriptional regulat 43.7 6.4 0.00022 33.0 0.8 21 6-26 23-43 (133)
132 1ubd_C Protein (YY1 zinc finge 42.8 12 0.00041 29.6 2.2 43 2-54 2-46 (124)
133 2epw_A Zinc finger protein 268 42.5 28 0.00095 22.3 3.7 36 4-48 11-46 (46)
134 1f2i_G Fusion of N-terminal 17 41.7 11 0.00039 26.9 1.8 40 4-52 18-59 (73)
135 2lvu_A Zinc finger and BTB dom 47.7 5.5 0.00019 22.4 0.0 10 43-52 3-12 (26)
136 2qho_B E3 ubiquitin-protein li 41.5 69 0.0024 23.0 5.7 45 111-156 6-52 (53)
137 2jp9_A Wilms tumor 1; DNA bind 41.3 8.5 0.00029 30.1 1.1 21 6-26 37-59 (119)
138 2el6_A Zinc finger protein 268 40.1 29 0.001 22.3 3.6 36 4-48 11-46 (46)
139 2m0e_A Zinc finger and BTB dom 39.8 7.7 0.00026 21.8 0.5 10 43-52 3-12 (29)
140 4dbg_B Ring finger protein 31; 39.5 19 0.00065 32.0 3.1 35 116-151 104-139 (162)
141 1zu1_A DSRBP-ZFA, RNA binding 39.5 6 0.00021 33.4 -0.1 63 5-67 32-118 (127)
142 2epx_A Zinc finger protein 28 39.3 32 0.0011 22.0 3.7 36 5-48 12-47 (47)
143 2em5_A ZFP-95, zinc finger pro 39.1 36 0.0012 21.8 3.9 36 4-48 11-46 (46)
144 2lvt_A Zinc finger and BTB dom 45.0 6.5 0.00022 22.6 0.0 10 43-52 3-12 (29)
145 3oja_B Anopheles plasmodium-re 38.6 3.3E+02 0.011 27.6 13.2 14 215-228 506-519 (597)
146 3mhs_A Ubiquitin carboxyl-term 38.3 11 0.00037 38.0 1.5 42 7-50 64-106 (476)
147 2lvr_A Zinc finger and BTB dom 44.2 6.8 0.00023 22.4 0.0 11 42-52 3-13 (30)
148 2emx_A Zinc finger protein 268 37.9 37 0.0013 21.5 3.7 36 4-48 9-44 (44)
149 2en6_A Zinc finger protein 268 37.7 33 0.0011 21.9 3.5 36 4-48 11-46 (46)
150 2ytq_A Zinc finger protein 268 37.2 35 0.0012 21.9 3.6 35 5-48 12-46 (46)
151 2ene_A Zinc finger protein 347 37.2 40 0.0014 21.5 3.9 36 4-48 11-46 (46)
152 2ep0_A Zinc finger protein 28 37.0 41 0.0014 21.4 3.9 36 4-48 11-46 (46)
153 2emm_A ZFP-95, zinc finger pro 36.4 38 0.0013 21.5 3.7 36 4-48 11-46 (46)
154 2emk_A Zinc finger protein 28 36.1 36 0.0012 21.8 3.5 35 5-48 12-46 (46)
155 2el4_A Zinc finger protein 268 35.9 45 0.0015 21.2 4.0 36 4-48 11-46 (46)
156 2eoo_A ZFP-95, zinc finger pro 35.9 32 0.0011 22.1 3.2 36 4-48 11-46 (46)
157 2emf_A Zinc finger protein 484 35.9 45 0.0015 21.3 4.0 36 4-48 11-46 (46)
158 2g45_A Ubiquitin carboxyl-term 35.8 12 0.00041 32.0 1.2 44 7-50 48-103 (129)
159 2ysp_A Zinc finger protein 224 35.5 39 0.0013 21.6 3.6 36 4-48 11-46 (46)
160 2eq4_A Zinc finger protein 224 35.2 41 0.0014 21.4 3.7 35 5-48 12-46 (46)
161 2eml_A Zinc finger protein 28 35.2 48 0.0016 21.1 4.0 36 4-48 11-46 (46)
162 2em9_A Zinc finger protein 224 34.7 48 0.0016 21.0 3.9 36 4-48 11-46 (46)
163 2uzg_A Ubiquitin carboxyl-term 34.6 14 0.00048 29.9 1.4 43 6-50 39-86 (97)
164 2em7_A Zinc finger protein 224 34.6 46 0.0016 21.2 3.9 36 4-48 11-46 (46)
165 2ytn_A Zinc finger protein 347 34.4 42 0.0014 21.4 3.6 35 5-48 12-46 (46)
166 2dlk_A Novel protein; ZF-C2H2 34.2 34 0.0012 24.5 3.4 49 6-62 8-60 (79)
167 1pft_A TFIIB, PFTFIIBN; N-term 34.1 11 0.00039 26.3 0.7 32 1-50 1-32 (50)
168 2eq0_A Zinc finger protein 347 34.1 48 0.0016 21.1 3.9 36 4-48 11-46 (46)
169 2en8_A Zinc finger protein 224 34.0 49 0.0017 21.0 3.9 36 4-48 11-46 (46)
170 2kvf_A Zinc finger and BTB dom 33.7 23 0.00077 19.8 1.9 21 6-26 4-24 (28)
171 2em8_A Zinc finger protein 224 33.1 38 0.0013 21.7 3.2 36 4-48 11-46 (46)
172 2eoq_A Zinc finger protein 224 33.1 45 0.0015 21.3 3.6 35 5-48 12-46 (46)
173 2ytj_A Zinc finger protein 484 33.0 53 0.0018 20.9 4.0 36 4-48 11-46 (46)
174 2ely_A Zinc finger protein 224 33.0 36 0.0012 21.8 3.1 35 5-48 12-46 (46)
175 1znf_A 31ST zinc finger from X 32.7 25 0.00084 19.4 2.0 21 6-26 2-22 (27)
176 2wbs_A Krueppel-like factor 4; 32.7 25 0.00085 25.8 2.5 21 6-26 6-28 (89)
177 2k2d_A Ring finger and CHY zin 32.6 21 0.00073 27.9 2.1 29 4-51 36-64 (79)
178 2km4_A Regulator of TY1 transp 32.2 28 0.00094 29.7 3.0 34 124-157 1-36 (142)
179 2ytd_A Zinc finger protein 473 32.0 43 0.0015 21.3 3.4 36 4-48 11-46 (46)
180 2eme_A Zinc finger protein 473 32.0 59 0.002 20.6 4.0 36 4-48 11-46 (46)
181 2i13_A AART; DNA binding, zinc 32.0 13 0.00045 31.9 0.9 20 6-25 50-69 (190)
182 2eov_A Zinc finger protein 484 32.0 40 0.0014 21.5 3.2 35 5-48 12-46 (46)
183 2yso_A ZFP-95, zinc finger pro 31.9 49 0.0017 21.1 3.6 35 5-48 12-46 (46)
184 1l4a_E Synaphin A; snare, snar 31.8 27 0.00091 27.2 2.4 38 228-272 20-58 (79)
185 1p3q_Q VPS9P, vacuolar protein 31.8 15 0.00051 26.9 1.0 36 115-152 13-51 (54)
186 2eoe_A Zinc finger protein 347 31.6 48 0.0017 21.0 3.6 36 4-48 11-46 (46)
187 2gmg_A Hypothetical protein PF 31.4 28 0.00095 28.9 2.7 8 43-50 85-92 (105)
188 2emh_A Zinc finger protein 484 31.4 39 0.0013 21.5 3.1 36 4-48 11-46 (46)
189 2kvh_A Zinc finger and BTB dom 31.0 27 0.00092 19.4 1.9 22 5-26 3-24 (27)
190 2di0_A Activating signal coint 30.9 1.2E+02 0.0041 23.3 6.0 38 116-154 15-54 (71)
191 2enc_A Zinc finger protein 224 30.8 54 0.0018 20.8 3.7 36 4-48 11-46 (46)
192 1ard_A Yeast transcription fac 30.7 27 0.00091 19.5 1.9 21 6-26 3-23 (29)
193 1paa_A Yeast transcription fac 30.6 31 0.0011 19.4 2.2 20 6-25 3-22 (30)
194 2i13_A AART; DNA binding, zinc 30.5 18 0.00063 30.9 1.6 21 6-26 106-126 (190)
195 2ebt_A Krueppel-like factor 5; 30.2 33 0.0011 25.7 2.9 21 6-26 16-38 (100)
196 2ep2_A Zinc finger protein 484 30.1 64 0.0022 20.4 4.0 36 4-48 11-46 (46)
197 2elz_A Zinc finger protein 224 29.6 57 0.0019 20.8 3.6 35 5-48 12-46 (46)
198 1f5n_A Interferon-induced guan 29.5 5.2E+02 0.018 27.1 13.6 10 176-185 480-489 (592)
199 2emp_A Zinc finger protein 347 29.4 47 0.0016 21.1 3.2 36 4-48 11-46 (46)
200 2ytm_A Zinc finger protein 28 29.4 37 0.0013 21.8 2.7 35 5-48 12-46 (46)
201 2en1_A Zinc finger protein 224 29.2 58 0.002 20.7 3.6 36 4-48 11-46 (46)
202 2kvg_A Zinc finger and BTB dom 29.2 26 0.0009 19.7 1.7 21 6-26 4-24 (27)
203 2kfq_A FP1; protein, de novo p 29.1 9.1 0.00031 23.0 -0.5 10 43-52 3-12 (32)
204 2ctu_A Zinc finger protein 483 29.0 5.5 0.00019 28.2 -1.8 42 4-61 17-58 (73)
205 2j7j_A Transcription factor II 28.5 18 0.00062 26.1 1.0 20 7-26 3-24 (85)
206 1rik_A E6APC1 peptide; E6-bind 28.3 31 0.0011 19.2 1.9 21 6-26 3-23 (29)
207 2ztd_A Holliday junction ATP-d 28.3 73 0.0025 29.3 5.3 24 115-138 165-188 (212)
208 2ytr_A Zinc finger protein 347 28.1 49 0.0017 21.0 3.1 35 5-48 12-46 (46)
209 1cuk_A RUVA protein; DNA repai 28.0 56 0.0019 29.8 4.4 32 114-145 160-193 (203)
210 2epz_A Zinc finger protein 28 27.4 65 0.0022 20.4 3.6 35 5-48 12-46 (46)
211 2lt7_A Transcriptional regulat 27.1 33 0.0011 28.5 2.5 49 6-63 51-99 (133)
212 2ytk_A Zinc finger protein 347 27.0 65 0.0022 20.4 3.6 36 4-48 11-46 (46)
213 1klr_A Zinc finger Y-chromosom 26.4 35 0.0012 18.9 1.9 21 6-26 3-23 (30)
214 2m0f_A Zinc finger and BTB dom 26.3 38 0.0013 18.6 2.1 21 6-26 3-23 (29)
215 2ytb_A Zinc finger protein 32; 25.8 21 0.00071 22.3 0.8 13 42-54 11-23 (42)
216 2ytt_A Zinc finger protein 473 25.5 35 0.0012 21.9 1.9 22 5-26 12-33 (46)
217 3ryc_E Stathmin-4; alpha-tubul 25.3 3.3E+02 0.011 23.6 10.8 16 175-190 40-55 (143)
218 2m0d_A Zinc finger and BTB dom 25.1 48 0.0016 18.3 2.3 21 6-26 4-24 (30)
219 2gli_A Protein (five-finger GL 24.9 40 0.0014 27.5 2.6 58 3-64 1-61 (155)
220 2ytg_A ZFP-95, zinc finger pro 24.9 50 0.0017 21.0 2.6 23 4-26 11-33 (46)
221 1rim_A E6APC2 peptide; E6-bind 24.6 37 0.0013 20.2 1.8 21 6-26 3-23 (33)
222 2yu8_A Zinc finger protein 347 24.2 49 0.0017 21.0 2.5 36 4-48 11-46 (46)
223 3vhs_A ATPase wrnip1; zinc fin 24.2 28 0.00095 21.8 1.1 13 3-15 4-16 (29)
224 1loi_A Cyclic 3',5'-AMP specif 24.1 15 0.00051 22.4 -0.2 12 40-51 3-14 (26)
225 1v92_A NSFL1 cofactor P47; 3-h 24.0 97 0.0033 20.8 4.1 37 116-153 7-44 (46)
226 2elx_A Zinc finger protein 406 23.4 56 0.0019 19.1 2.5 22 5-26 7-28 (35)
227 2dal_A Protein KIAA0794; FAS a 23.2 2.2E+02 0.0074 20.7 6.1 41 115-156 16-57 (62)
228 3nr7_A DNA-binding protein H-N 22.8 1.2E+02 0.004 24.1 4.8 15 246-260 57-71 (86)
229 2dam_A ETEA protein; KIAA0887, 22.7 1.7E+02 0.0059 21.7 5.6 41 115-156 19-61 (67)
230 2dlk_A Novel protein; ZF-C2H2 22.0 37 0.0013 24.3 1.7 40 4-52 37-78 (79)
231 1qxf_A GR2, 30S ribosomal prot 21.9 43 0.0015 25.5 1.9 29 4-50 6-34 (66)
232 2i50_A Ubiquitin carboxyl-term 21.8 28 0.00096 29.5 1.0 43 6-50 55-104 (126)
233 2elr_A Zinc finger protein 406 21.7 55 0.0019 19.3 2.2 20 6-25 10-29 (36)
234 1q1a_A HST2 protein; ternary c 21.4 50 0.0017 31.4 2.9 13 4-16 135-147 (289)
235 3h0g_L DNA-directed RNA polyme 21.0 28 0.00096 26.2 0.8 26 26-51 5-30 (63)
236 2els_A Zinc finger protein 406 21.0 69 0.0023 19.0 2.6 22 5-26 9-30 (36)
237 2elq_A Zinc finger protein 406 20.8 67 0.0023 19.0 2.5 22 5-26 9-30 (36)
238 1njq_A Superman protein; zinc- 20.7 64 0.0022 19.7 2.4 22 5-26 6-27 (39)
239 1p7a_A BF3, BKLF, kruppel-like 20.4 61 0.0021 19.3 2.2 19 6-24 12-30 (37)
240 3eyy_A Putative iron uptake re 20.2 45 0.0015 28.3 2.0 45 4-51 89-139 (145)
241 2i1j_A Moesin; FERM, coiled-co 20.0 1.7E+02 0.0059 30.6 6.9 14 139-152 180-193 (575)
No 1
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=99.83 E-value=1.1e-20 Score=158.05 Aligned_cols=94 Identities=31% Similarity=0.496 Sum_probs=84.3
Q ss_pred HHHHHHhhhhcCCchHHHHHHHHHHHHHHhhhccCCCccccccccccchhhhhhccCcccHHHHHHHcCCeeecCCceEE
Q 015122 304 RECLRSLKQNHKDDDAKVKRAFQTLLTYIGNVAKNPNEEKFRKIRLSNQTFQDRVGALKGGLEFLELCGFEKIEGGEFLF 383 (413)
Q Consensus 304 r~~L~slk~~~~~s~a~~~~a~~tL~~~l~Ni~~~P~e~KfRrIr~~N~~f~~kV~~~~ga~e~L~a~GF~~~~~~~~lv 383 (413)
+.|+.+|..|+ .+.+.+|++||.+|++||+.||+|+|||+||++|++|+++|++++||++||.++||++. ++.|+
T Consensus 4 ~~~l~~L~~n~---~~~~~~a~~tL~k~l~Nil~~P~e~KyR~Ir~~N~~f~~~v~~~~G~~e~L~a~GF~~~--~~~l~ 78 (99)
T 2ccq_A 4 SPAVAELCQNT---PETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEG--ETHLI 78 (99)
T ss_dssp SHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHCTTCGGGGEEETTCHHHHHHTTTSTTHHHHHHHHTCEEC--SSEEE
T ss_pred HHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHcCCCCcccceeecCCHHHHHHhcCCccHHHHHHHccceeC--CCeee
Confidence 46888888765 45689999999999999999999999999999999999999999999999999999964 55699
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 015122 384 LPREKVDMAVLNSAGSELTS 403 (413)
Q Consensus 384 l~~~~~~~~~L~~A~~~L~~ 403 (413)
||.+ .++..|..+++.|..
T Consensus 79 lp~~-~~~~~l~~~~d~l~~ 97 (99)
T 2ccq_A 79 FPKK-ASVEQLQKIRDLIAI 97 (99)
T ss_dssp CCTT-SCHHHHHHHHHHHHT
T ss_pred cCCC-CCHHHHHHHHHHHHh
Confidence 9855 699999999998864
No 2
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=99.83 E-value=9.5e-21 Score=164.39 Aligned_cols=98 Identities=29% Similarity=0.462 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHhhhccCCCccccccccccchhhhhhccCcccHHHHHHHcCCeeecCC
Q 015122 300 VEQMRECLRSLKQNHKDDDAKVKRAFQTLLTYIGNVAKNPNEEKFRKIRLSNQTFQDRVGALKGGLEFLELCGFEKIEGG 379 (413)
Q Consensus 300 ~eqlr~~L~slk~~~~~s~a~~~~a~~tL~~~l~Ni~~~P~e~KfRrIr~~N~~f~~kV~~~~ga~e~L~a~GF~~~~~~ 379 (413)
.+.++.++.+|..++ .+.+.+|++||.+||+||+.||+|+|||+||++|++|+++|++++||++||.++||++. +
T Consensus 15 ~~~l~~~l~~L~~n~---~~~~~~a~~tL~kil~NIl~~P~e~KyRkIRl~N~~f~~~V~~~~Ga~e~L~a~GF~~~--~ 89 (124)
T 2d5u_A 15 SSSASPAVAELCQNT---PETFLEASKLLLTYADNILRNPSDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEG--E 89 (124)
T ss_dssp CSSCCHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHSSSCGGGSEEECCCHHHHHTTSSSTTHHHHHHHHTCBCC--S
T ss_pred hHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHcCCCcccceeeecCCHHHHHHhcCCccHHHHHHHcccccC--C
Confidence 355678999998766 45689999999999999999999999999999999999999999999999999999954 5
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHH
Q 015122 380 EFLFLPREKVDMAVLNSAGSELTS 403 (413)
Q Consensus 380 ~~lvl~~~~~~~~~L~~A~~~L~~ 403 (413)
++||||.+ .++..|+.+++.|..
T Consensus 90 ~~lvlp~~-~~~~~l~~~~d~L~~ 112 (124)
T 2d5u_A 90 THLIFPKK-ASVEQLQKIRDLIAI 112 (124)
T ss_dssp SEEECCTT-SCHHHHHHHHHHHHH
T ss_pred CeeecCCC-CCHHHHHHHHHHHHH
Confidence 66999964 577777777666544
No 3
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.81 E-value=4.4e-21 Score=212.24 Aligned_cols=123 Identities=29% Similarity=0.484 Sum_probs=104.1
Q ss_pred hhhhhcccCCCCCCCCCccccccccccccccccccchhcccccccccc---Cccc---cCCccccccCCC---CC-CCCc
Q 015122 38 EAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVDMS---GS-QPEE 107 (413)
Q Consensus 38 e~~~~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~---p~K~---~~~~~~ldl~~~---g~-~~ee 107 (413)
|.+.+|.|+.|+++ ..++|++.|.++|++|+|+.+||.++. |.|+ |.+|..|||+.| |. ++|+
T Consensus 559 E~Le~y~C~~C~~k-------~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~~E~ 631 (854)
T 3ihp_A 559 EQVDDFWSTALQAK-------SVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEE 631 (854)
T ss_dssp EEEEEEEETTTTEE-------EEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSCTTCC
T ss_pred eEeeeeeccccCCc-------ceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhccCCCCCCce
Confidence 33444999999986 789999999999999999999999953 8898 778999999987 54 6653
Q ss_pred C--------------cccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCC
Q 015122 108 M--------------VEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (413)
Q Consensus 108 ~--------------~~~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~d~p~~~~~ 167 (413)
. ..+.+|+++|++|++|||+.++|++||++|||.+++.||+||++||+|+||++|+..+.
T Consensus 632 ~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~ 705 (854)
T 3ihp_A 632 ELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPG 705 (854)
T ss_dssp BCCCC----------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC-
T ss_pred ecccccccccccccccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccc
Confidence 2 13457899999999999999999999999999999999999999999999999997764
No 4
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.71 E-value=8.2e-18 Score=130.08 Aligned_cols=58 Identities=40% Similarity=0.620 Sum_probs=53.4
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 015122 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168 (413)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~d~p~~~~~~ 168 (413)
..+|++.|++|++|||++++|.+||++|||.++|.||+|||+|++|||+|+|+..|.+
T Consensus 6 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d~d~p~~~~~~ 63 (64)
T 2crn_A 6 SGSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPISGPSS 63 (64)
T ss_dssp CCCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTSCCSCCCCSC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCccccCCCCCCCC
Confidence 3467789999999999999999999999999999999999999999999999987653
No 5
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.64 E-value=2.9e-16 Score=127.56 Aligned_cols=59 Identities=37% Similarity=0.638 Sum_probs=54.8
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 015122 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168 (413)
Q Consensus 110 ~~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~d~p~~~~~~ 168 (413)
.+.++++.|++|++|||++++|++||++|+|.+++.|++|||+|++|+|||+|+..|++
T Consensus 25 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d~d~p~~~~~~ 83 (84)
T 1vek_A 25 QPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDAPISGPSS 83 (84)
T ss_dssp CCCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSTTTSCSSSCCC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccccCCCCCCC
Confidence 45679999999999999999999999999988999999999999999999999987653
No 6
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.3e-16 Score=124.42 Aligned_cols=59 Identities=37% Similarity=0.738 Sum_probs=55.0
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 015122 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168 (413)
Q Consensus 110 ~~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~d~p~~~~~~ 168 (413)
.+.+|++.|++|++|||++++|++||++|+|.++|.|++|||+|++|+|+|+|+..|+.
T Consensus 5 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d~d~p~~~~~~ 63 (74)
T 2dag_A 5 SSGLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGS 63 (74)
T ss_dssp CCSSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTTSSSCSCCSSC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccccccCCCCC
Confidence 45689999999999999999999999999987899999999999999999999987753
No 7
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.59 E-value=1.3e-15 Score=117.73 Aligned_cols=54 Identities=44% Similarity=0.788 Sum_probs=50.8
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCC
Q 015122 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPM 164 (413)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~d~p~~ 164 (413)
..+|++.|.+|++|||++.+|++||++|||.++|.|++|||+|++|+|+|+|+.
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d~d~pl~ 59 (64)
T 1whc_A 6 SGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLS 59 (64)
T ss_dssp CCCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSCTTCCSS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcccccccC
Confidence 457889999999999999999999999987799999999999999999999986
No 8
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=116.21 Aligned_cols=57 Identities=26% Similarity=0.468 Sum_probs=53.5
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCC
Q 015122 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (413)
Q Consensus 110 ~~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~d~p~~~~~ 167 (413)
.+.+++..|.+|++|||++.+|++||++|+| +++.|++||++|++|+|+|+|+..|+
T Consensus 5 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~A~e~L~~~~~d~d~d~p~~~p~ 61 (63)
T 2dak_A 5 SSGPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDDLDAEAAMSGPS 61 (63)
T ss_dssp SCCCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CSHHHHHHHHHHHHSCCSSSCCCCSC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCcccccCCCCCC
Confidence 3568999999999999999999999999998 89999999999999999999998775
No 9
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.8e-15 Score=121.56 Aligned_cols=56 Identities=41% Similarity=0.697 Sum_probs=52.5
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCC
Q 015122 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (413)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~d~p~~~~~ 167 (413)
+.+|++.|++|++|||++.+|++||++|++ +++.|++|||+|++|+|+|+|+..|+
T Consensus 26 ~~~~e~~i~~L~~MGF~~~~a~~AL~~t~~-nve~A~ewL~~~~~d~d~d~pl~~~~ 81 (83)
T 2dai_A 26 ERVDEAALRQLTEMGFPENRATKALQLNHM-SVPQAMEWLIEHAEDPTIDTPLSGPS 81 (83)
T ss_dssp SSCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHGGGCSTTCCCCCCSS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCCcccccCCCCCC
Confidence 568999999999999999999999999966 99999999999999999999998765
No 10
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.48 E-value=8.9e-14 Score=120.59 Aligned_cols=55 Identities=33% Similarity=0.733 Sum_probs=51.7
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCC
Q 015122 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVP 166 (413)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~d~p~~~~ 166 (413)
+||+..|.+|++|||++.+|++||++|||.+++.||+||++|++|+++++|+..+
T Consensus 1 ~~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~epl~~~ 55 (126)
T 2lbc_A 1 DIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMP 55 (126)
T ss_dssp CCCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCTTCCS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccccccccccccc
Confidence 4789999999999999999999999999999999999999999999999987654
No 11
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.43 E-value=6.9e-14 Score=108.01 Aligned_cols=46 Identities=35% Similarity=0.603 Sum_probs=44.2
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCC
Q 015122 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (413)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d 158 (413)
++++.|++|++|||++++|++||++|+|.+++.|++|||+|++|||
T Consensus 18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 18 KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 6888999999999999999999999998899999999999999986
No 12
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.37 E-value=3.6e-13 Score=101.99 Aligned_cols=42 Identities=19% Similarity=0.488 Sum_probs=39.6
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 015122 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (413)
.++.|++|++|||+.++|.+||++||| |+|+|+||||+|+|-
T Consensus 19 e~e~V~~LvsMGFs~~qA~kALKat~~-NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 19 ERQCVETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCS-CHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCC
Confidence 467899999999999999999999999 999999999999974
No 13
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.34 E-value=2.5e-12 Score=98.97 Aligned_cols=55 Identities=33% Similarity=0.479 Sum_probs=50.1
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCC
Q 015122 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (413)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~d~p~~~~~ 167 (413)
.++++.|++|++|||++.+|++||.+|+| +++.|++|||+|.++.+...|+..++
T Consensus 7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~~-nve~A~e~L~~~~~~~~~~~p~~~~~ 61 (63)
T 1wji_A 7 GVDEKALKHITEMGFSKEASRQALMDNGN-NLEAALNVLLTSNKQKPVMGPPSGPS 61 (63)
T ss_dssp SSCHHHHHHHHTTTCCHHHHHHHHHHTTS-CHHHHHHHHHHHSSCCCCCSSCCCSS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCCcccCCCCCCCC
Confidence 47999999999999999999999999998 99999999999999988877776554
No 14
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.23 E-value=9.6e-12 Score=98.39 Aligned_cols=48 Identities=27% Similarity=0.548 Sum_probs=45.0
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCC
Q 015122 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (413)
Q Consensus 110 ~~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d 158 (413)
.+.+++..|++|++|||++.+|++||+.|+| +++.|++|||+|++|+.
T Consensus 25 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~Ave~L~~~~~d~~ 72 (73)
T 1wiv_A 25 TSDIDQSSVDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNNSGPSS 72 (73)
T ss_dssp SCSSCHHHHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHSCCSSC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhCCCCCC
Confidence 4568999999999999999999999999998 99999999999999873
No 15
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=6.7e-12 Score=90.90 Aligned_cols=43 Identities=28% Similarity=0.478 Sum_probs=40.1
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 015122 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (413)
Q Consensus 110 ~~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (413)
.+.++++.|.+|++|||++++|.+||++|| +++.|++||++|+
T Consensus 5 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~~~--n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 5 SSGVNQQQLQQLMDMGFTREHAMEALLNTS--TMEQATEYLLTHP 47 (47)
T ss_dssp CCSSCHHHHHHHHHHHCCHHHHHHHHHHSC--SHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHcC--CHHHHHHHHHcCC
Confidence 467899999999999999999999999995 7999999999985
No 16
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.20 E-value=3.6e-12 Score=92.57 Aligned_cols=45 Identities=27% Similarity=0.460 Sum_probs=41.6
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCC
Q 015122 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (413)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d 158 (413)
-+++.+++|++|||++..|.+||.+||+ +++.|++|||+|++||+
T Consensus 3 ~e~eaI~rL~~mGF~~~~a~~Al~a~~~-n~e~A~~~Lf~~~~d~~ 47 (47)
T 1dv0_A 3 QEKEAIERLKALGFPESLVIQAYFACEK-NENLAANFLLSQNFDDE 47 (47)
T ss_dssp CCHHHHTTTTTTTCCHHHHHHHHTTTTS-CHHHHHHHTTSCCCCCC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCcCCCC
Confidence 3678899999999999999999999996 99999999999999974
No 17
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.17 E-value=4.9e-11 Score=96.95 Aligned_cols=52 Identities=31% Similarity=0.434 Sum_probs=44.8
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCC
Q 015122 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMP 163 (413)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~d~d~p~ 163 (413)
..+|++.|.+|++|||++.+|++||+. +|.+++.|++|||+|++|+|.....
T Consensus 18 ~~~n~~~I~qL~~MGF~~~~a~~AL~~-~n~n~e~A~ewL~~h~~D~D~~~~~ 69 (85)
T 2dkl_A 18 AWIMSRLIKQLTDMGFPREPAEEALKS-NNMNLDQAMSALLEKKVDVDKRGLG 69 (85)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHH-TTSCHHHHHHHHHTTSCCSSCCCCT
T ss_pred cccCHHHHHHHHHcCCCHHHHHHHHHH-cCCCHHHHHHHHHHCcCCcccccCC
Confidence 457899999999999999999999955 4459999999999999998755443
No 18
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.16 E-value=2.1e-11 Score=86.60 Aligned_cols=41 Identities=29% Similarity=0.428 Sum_probs=38.3
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 015122 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (413)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (413)
++++.+++|++|||+++.|.+||..|+| +++.|++||++|.
T Consensus 3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKCNW-DLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTS-CHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCc-CHHHHHHHHHcCC
Confidence 5678999999999999999999999987 9999999999983
No 19
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.15 E-value=1.1e-11 Score=106.71 Aligned_cols=50 Identities=18% Similarity=0.450 Sum_probs=43.9
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc--CCCCCCCC
Q 015122 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE--NDPDIDEM 162 (413)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~--dd~d~d~p 162 (413)
..+.++|.+|++||||.++|.|||+.||| +++.||+||++|+ +|+++|+|
T Consensus 6 ~~e~~~v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h~~L~d~~~d~~ 57 (118)
T 4ae4_A 6 PSERQCVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKGFDPL 57 (118)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHhchhcccCCChh
Confidence 34678999999999999999999999999 9999999999998 45555543
No 20
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.13 E-value=4.2e-11 Score=88.31 Aligned_cols=42 Identities=31% Similarity=0.530 Sum_probs=40.1
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015122 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152 (413)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~ 152 (413)
+++|..++++|++|||++++|.+||+.|||.+++.||+||..
T Consensus 6 ~~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 6 SGVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp CSCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 478999999999999999999999999999999999999976
No 21
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.12 E-value=1.3e-10 Score=93.86 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=43.7
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 015122 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (413)
Q Consensus 110 ~~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~ 157 (413)
...++++.|++|++|||++.+|++||..|+| +++.|++|||+|+++.
T Consensus 25 ~~~~~ee~I~~Lv~MGF~~~~A~~AL~~t~g-dve~A~e~L~sh~~~i 71 (83)
T 1veg_A 25 QASPSQESINQLVYMGFDTVVAEAALRVFGG-NVQLAAQTLAHHGGSL 71 (83)
T ss_dssp SCCCCHHHHHHHHHHSCCHHHHHHHHHHTTT-CHHHHHHHHHHHTSSC
T ss_pred cCCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCC
Confidence 4567899999999999999999999999998 8999999999999974
No 22
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.05 E-value=1.5e-10 Score=100.13 Aligned_cols=48 Identities=31% Similarity=0.617 Sum_probs=44.9
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcC-CCCCC
Q 015122 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN-DPDID 160 (413)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~d-d~d~d 160 (413)
.+++..+.+|++|||++++|.+||..||| +++.|++||++|++ |+|+|
T Consensus 76 ~~~e~~v~~L~~MGF~~~~a~~AL~~~~~-~~e~A~e~L~~~~~~d~~~d 124 (126)
T 2lbc_A 76 QPPEEIVAIITSMGFQRNQAIQALRATNN-NLERALDWIFSHPEFEEDSD 124 (126)
T ss_dssp CCCHHHHHHHHHHTSCHHHHHHHHHHHTS-CHHHHHHHHHTCCSSCCCCC
T ss_pred CcCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCccCCC
Confidence 47999999999999999999999999988 99999999999999 87765
No 23
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.03 E-value=2e-10 Score=83.99 Aligned_cols=41 Identities=29% Similarity=0.393 Sum_probs=38.3
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (413)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (413)
..+++.|++|++|||+++.|.+||+.|+| +++.|++||++|
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~e~L~~g 46 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTS-CSHHHHHHHHHC
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhC
Confidence 34678899999999999999999999998 999999999997
No 24
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.92 E-value=9.9e-10 Score=81.28 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=37.5
Q ss_pred CHHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 015122 114 DKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHE 154 (413)
Q Consensus 114 ~~~~l~~L~~MGF-~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (413)
-+..|++|++||| ++.++.+||..|+| +++.|++||++|+
T Consensus 12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~g-n~e~A~e~L~~~~ 52 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALIATGG-DINAAIERLLGSS 52 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhCc
Confidence 4678999999999 99999999999998 9999999999984
No 25
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.90 E-value=1.9e-09 Score=85.14 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=41.8
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 015122 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (413)
Q Consensus 110 ~~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (413)
...++++.|++|++|||+++.|.+||..++| +++.|++|||.|.+.
T Consensus 25 ~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~-nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 25 RVAASEEQIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQSGP 70 (73)
T ss_dssp CSCCCHHHHHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHHTCSCS
T ss_pred CCcccHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCC
Confidence 3456789999999999999999999999998 999999999998764
No 26
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.89 E-value=1.8e-09 Score=80.09 Aligned_cols=39 Identities=26% Similarity=0.488 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 015122 115 KELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHE 154 (413)
Q Consensus 115 ~~~l~~L~~MGF-~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (413)
+..|++|++||| ++.++.+||..|+| |++.|++||++|.
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~g-nve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGG-DINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHHcC
Confidence 456999999999 99999999999998 9999999999986
No 27
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.78 E-value=6.3e-09 Score=72.13 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHH
Q 015122 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVV 151 (413)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~ 151 (413)
++.+++|++|||+++.|++||..|++ +++.|++||+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~~~-n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAANG-DLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHC
Confidence 56899999999999999999999987 9999999985
No 28
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.69 E-value=2e-08 Score=72.45 Aligned_cols=39 Identities=31% Similarity=0.471 Sum_probs=34.9
Q ss_pred CHHHHHHHHhCCCC-HHHHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 114 DKELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVEH 153 (413)
Q Consensus 114 ~~~~l~~L~~MGF~-~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (413)
-+..|++|++|||+ +.++.+||..|+| |++.|++|||+|
T Consensus 7 ~~~~i~~L~~MGF~d~~~~~~AL~~~~g-nv~~Ave~L~~~ 46 (46)
T 2bwb_A 7 YEHQLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNG 46 (46)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHcc
Confidence 35679999999995 6778999999998 999999999986
No 29
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.68 E-value=2.2e-08 Score=74.65 Aligned_cols=42 Identities=29% Similarity=0.352 Sum_probs=37.0
Q ss_pred CHHHHHHHHhCCCCH-HHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 015122 114 DKELLKELEAMGFPV-ARATRALHYSGNANVEAAVNWVVEHEND 156 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~-~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (413)
-+..|++|++|||+. .++.+||..|++ +++.|++|||+|.+.
T Consensus 9 ~~~~l~~L~~MGF~d~~~n~~AL~~~~G-dv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 9 FQVQLEQLRSMGFLNREANLQALIATGG-DVDAAVEKLRQSSGP 51 (54)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCCc
Confidence 367899999999966 457999999998 999999999999865
No 30
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.67 E-value=1.8e-08 Score=78.20 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCCHH-HHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 015122 115 KELLKELEAMGFPVA-RATRALHYSGNANVEAAVNWVVEHENDP 157 (413)
Q Consensus 115 ~~~l~~L~~MGF~~~-~a~kAL~~tgn~~~E~A~~Wl~~h~dd~ 157 (413)
+..|.+|.+|||... ++.+||..|+| |++.|++|||+|.++.
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~G-nve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDG-DTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCCcc
Confidence 557999999999655 55999999998 9999999999998875
No 31
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.64 E-value=3e-08 Score=78.50 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=38.3
Q ss_pred CHHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 015122 114 DKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHENDP 157 (413)
Q Consensus 114 ~~~~l~~L~~MGF-~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~ 157 (413)
-+..|++|++||| ++.++.+||..++| +++.|++|||.|++.+
T Consensus 29 ye~qi~qL~eMGF~dr~~~~~AL~~t~G-nve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 29 YQQELEELKALGFANRDANLQALVATDG-DIHAAIEMLLGASGPS 72 (74)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhCCCCC
Confidence 3667999999999 58888999999998 9999999999997654
No 32
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.60 E-value=4.5e-08 Score=74.02 Aligned_cols=39 Identities=31% Similarity=0.518 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 015122 115 KELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVEHE 154 (413)
Q Consensus 115 ~~~l~~L~~MGF~-~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (413)
+..|++|++|||+ +.++.+||..|++ +++.|++|||+|+
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~g-nve~Ave~L~~~~ 57 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhCC
Confidence 5679999999995 7788999999998 9999999999985
No 33
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.46 E-value=1.3e-07 Score=81.12 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=39.1
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 015122 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (413)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (413)
..+++..+.+|++|||+.+.|++||..|+| +++.|++|||...
T Consensus 73 ~~~~~~~v~~L~eMGF~~~~a~~AL~~~~n-d~erAlewL~~~~ 115 (118)
T 4ae4_A 73 MMEFLQLMSKFKEMGFELKDIKEVLLLHNN-DQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHHhc
Confidence 345778999999999999999999999999 9999999999754
No 34
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.31 E-value=1.7e-07 Score=94.71 Aligned_cols=45 Identities=27% Similarity=0.336 Sum_probs=42.3
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 015122 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (413)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~ 157 (413)
..+++.|.+|++|||++++|.+||++++| |++.|++|||+|++|.
T Consensus 166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~~n-n~~~A~e~L~~gip~~ 210 (368)
T 1oqy_A 166 SEYETMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTGIPGS 210 (368)
T ss_dssp TTHHHHHHHHHTTTCCSHHHHHHHHHSCS-STTHHHHTTTTSSTTC
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCcc
Confidence 45888999999999999999999999999 9999999999998875
No 35
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.26 E-value=1.6e-06 Score=63.58 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=36.2
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (413)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (413)
+++-++.+.+|++|||+++.+.+||..|+| +++.|.+.|.+-
T Consensus 8 ~~~~~~~Ia~Lm~mGFsr~~ai~AL~~a~n-nve~AaniLlef 49 (52)
T 2ooa_A 8 LENVDAKIAKLMGEGYAFEEVKRALEIAQN-NVEVARSILREF 49 (52)
T ss_dssp ---CHHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHh
Confidence 344458999999999999999999999998 999999999874
No 36
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.13 E-value=3e-06 Score=71.60 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=36.8
Q ss_pred CHHHHHHHHhCCCC-HHHHHHHHHHhCCCCHHHHHHHHHHhcC
Q 015122 114 DKELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVEHEN 155 (413)
Q Consensus 114 ~~~~l~~L~~MGF~-~~~a~kAL~~tgn~~~E~A~~Wl~~h~d 155 (413)
-+.-|++|.+|||+ +.++.+||..+++ |++.|++||+++.+
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~G-dve~AVe~L~~~~~ 107 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGG-DIQAALELIFAGGA 107 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhcCC
Confidence 47789999999995 5899999999998 99999999999854
No 37
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.10 E-value=2.8e-06 Score=62.80 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=39.9
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 015122 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (413)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (413)
+.+.+..+.+|++|||+++.+.+||..++| +++.|.|.|.+-.--
T Consensus 4 ~~p~e~~Ia~L~smGfsr~da~~AL~ia~N-dv~~AtNiLlEf~~~ 48 (56)
T 2juj_A 4 SPQLSSEIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFVSI 48 (56)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTT-CSHHHHHHHHHSCCC
T ss_pred CCCChHHHHHHHHcCCCHHHHHHHHHHhcc-cHHHHHHHHHHHHcc
Confidence 456678899999999999999999999999 999999999985543
No 38
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.09 E-value=6.5e-06 Score=60.64 Aligned_cols=44 Identities=23% Similarity=0.260 Sum_probs=39.0
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcC
Q 015122 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN 155 (413)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~d 155 (413)
+++-+..+.+|++|||+++.+.+||..|+| |++.|.+.|.+...
T Consensus 6 ~~~~e~~I~~L~~lGF~r~~ai~AL~~a~n-nve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 6 SGQLSSEIERLMSQGYSYQDIQKALVIAHN-NIEMAKNILREFSG 49 (53)
T ss_dssp CSCSHHHHHHHHHHTCCHHHHHHHHHHTTT-CHHHHHHHHHHHTS
T ss_pred ccchHHHHHHHHHcCCCHHHHHHHHHHhcC-CHHHHHHHHHHhcc
Confidence 445567799999999999999999999998 99999999988654
No 39
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.97 E-value=2.2e-06 Score=86.56 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=42.1
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 015122 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (413)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~ 157 (413)
..+++.++.|++|||++..|.+||+++++ |++.|.+|||+|++|.
T Consensus 323 ~ee~eaI~rL~~mGF~~~~a~~al~a~~~-n~e~A~~~L~~~~~d~ 367 (368)
T 1oqy_A 323 PQEKEAIERLKALGFPESLVIQAYFACEK-NENLAANFLLSQNFDD 367 (368)
T ss_dssp TTTHHHHHHHHHHTCCSHHHHHHTSSSSS-CSSHHHHHHHHHHCCC
T ss_pred CcCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhhCcCcC
Confidence 45899999999999999999999999997 8999999999999984
No 40
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=97.87 E-value=2.7e-05 Score=55.49 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 015122 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (413)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (413)
+..+.+|++|||+++.+.+||-.+.| +++.|.|-|.+..
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~N-nie~A~nIL~ef~ 43 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFA 43 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTT-CHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhc-cHHHHHHHHHHhc
Confidence 46789999999999999999999998 9999999998754
No 41
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.64 E-value=3.6e-06 Score=66.33 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 015122 144 EAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQEL 190 (413)
Q Consensus 144 E~A~~Wl~~h~dd~d~d~p~~~~~~~~~~~~k~~lT~eEk~~k~~el 190 (413)
|+||+|||+|++|||||+|+..+. +-..+++..++.+|
T Consensus 2 ~~am~wl~~h~dDpd~d~pl~~~~---------~~~~~~~v~~L~~M 39 (73)
T 1wiv_A 2 SSGSSGLLSHMDDPDIDAPISHQT---------SDIDQSSVDTLLSF 39 (73)
T ss_dssp CCCCCCCSSCCSCSCSSCCSCCSS---------CSSCHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCccCCCCCCC---------CCCCHHHHHHHHHc
Confidence 568999999999999999986521 12246666666655
No 42
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=97.63 E-value=8e-06 Score=79.33 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=45.1
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhcccccccccc--Cccc---cCCc-cccccCCC
Q 015122 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDMS 101 (413)
Q Consensus 43 ~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~--p~K~---~~~~-~~ldl~~~ 101 (413)
|.|+.|+++ ..++|+..|.++|++|+|+.+||.... +.|+ +..| +.||++.+
T Consensus 227 ~~C~~C~~~-------~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~ 284 (355)
T 3i3t_A 227 PVCDRCRQK-------TRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDF 284 (355)
T ss_dssp CCCSSSCCC-------CCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGG
T ss_pred eeCCCCCCc-------cceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhh
Confidence 999999987 789999999999999999999999875 6777 5567 66888755
No 43
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.56 E-value=8.6e-05 Score=55.12 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=38.8
Q ss_pred ccCHHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 015122 112 EVDKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHENDP 157 (413)
Q Consensus 112 ~~~~~~l~~L~~MGF-~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~ 157 (413)
+.+...|.+|.+||| ...+-.+||..+|+ +++.|+++|+...+.+
T Consensus 7 e~~a~~L~~L~eMGF~D~~~N~~aL~~~~g-nv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 7 GQTAALMAHLFEMGFCDRQLNLRLLKKHNY-NILQVVTELLQLSGPS 52 (54)
T ss_dssp TTHHHHHHHHHHHTCCCHHHHHHHHTTTTT-CHHHHHHHHHHHSSSC
T ss_pred HhhHHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhccCCC
Confidence 346678999999999 88999999998887 8999999999876543
No 44
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=97.53 E-value=7.6e-06 Score=81.56 Aligned_cols=54 Identities=7% Similarity=-0.077 Sum_probs=46.4
Q ss_pred hhcccCCCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccCCC
Q 015122 41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 41 ~~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~~~ 101 (413)
+++.|+.||+. ..++|+..|.++|++|+|+.+||.+.. ..|+ +..|..|||+.|
T Consensus 208 l~~~c~~c~~~-------~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~ 268 (404)
T 2ayn_A 208 ITKQSPTLQRN-------ALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYEL 268 (404)
T ss_dssp CCCEETTTTEE-------CCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGG
T ss_pred eeecchhhCCc-------cceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHh
Confidence 45899999975 678999999999999999999999984 5677 667999999754
No 45
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.47 E-value=6.1e-05 Score=83.54 Aligned_cols=46 Identities=28% Similarity=0.533 Sum_probs=42.3
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 015122 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (413)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~ 157 (413)
..++++.+++|.+|||+..+|++||..|+| +++.|++|||+|++|.
T Consensus 717 ~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~-~~eraidwlfs~~d~~ 762 (854)
T 3ihp_A 717 DPPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDDL 762 (854)
T ss_dssp --CCHHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHhhcC-cHHHHHHhhhcCcccc
Confidence 457999999999999999999999999998 9999999999999874
No 46
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=97.40 E-value=0.00015 Score=67.07 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (413)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (413)
++.|++|++|||+++.|..||...++ +++.|++|||+|
T Consensus 164 eekV~~l~~MGf~~~~a~~AL~~~~w-d~~~A~e~L~~~ 201 (201)
T 3k9o_A 164 TKKIENLCAMGFDRNAVIVALSSKSW-DVETATELLLSN 201 (201)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 67899999999999999999999888 999999999986
No 47
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=97.39 E-value=1.3e-05 Score=82.05 Aligned_cols=52 Identities=10% Similarity=0.106 Sum_probs=46.3
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhcccccccccc---Cccc---cCCccccccCCC
Q 015122 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 43 ~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~---p~K~---~~~~~~ldl~~~ 101 (413)
|.|+.|+.. ..++|+..|.++|++|+|+.+||.+.. +.|+ +..|..|||+.|
T Consensus 339 ~~C~~C~~~-------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~ 396 (476)
T 3mhs_A 339 YHCGECNST-------QDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNY 396 (476)
T ss_dssp CEETTTTEE-------CCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGG
T ss_pred CcCCccCCc-------ccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechhh
Confidence 999999985 689999999999999999999999753 7787 678999999876
No 48
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.35 E-value=0.00013 Score=66.35 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=37.2
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 015122 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (413)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (413)
.+.+.++.|++|||++..+..|+.+++. |++.|.+|||+|+.|
T Consensus 129 ee~eaI~rL~~mGF~r~~viqA~~ac~k-nee~Aan~L~~~~~d 171 (171)
T 2qsf_X 129 EDDQAISRLCELGFERDLVIQVYFACDK-NEEAAANILFSDHAD 171 (171)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHTTC---
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhccCC
Confidence 3568899999999999999999999987 999999999998765
No 49
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=97.13 E-value=4.3e-05 Score=73.93 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=44.4
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhcccccccccc--Cccc---cCCc-cccccCCC
Q 015122 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDMS 101 (413)
Q Consensus 43 ~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~--p~K~---~~~~-~~ldl~~~ 101 (413)
|.|+.|+.. ..++|+..|.++|++|+|+.+||.... ..|+ +..| +.||++.+
T Consensus 217 ~~C~~C~~~-------~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~ 274 (348)
T 3nhe_A 217 PTCCRCRGR-------KRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREF 274 (348)
T ss_dssp CEETTTTEE-------CCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGG
T ss_pred eECCCCCCc-------ccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhh
Confidence 899999975 689999999999999999999998875 6676 5567 57998765
No 50
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.04 E-value=0.00074 Score=56.48 Aligned_cols=41 Identities=29% Similarity=0.372 Sum_probs=37.0
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 015122 115 KELLKELEAM-GFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (413)
Q Consensus 115 ~~~l~~L~~M-GF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (413)
++.|..|++| ||+++.|+.||..+++ +++.|++.||+...|
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ng-Dl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNG-DVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCc
Confidence 3568999999 9999999999999998 999999999987653
No 51
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=96.97 E-value=0.00013 Score=73.26 Aligned_cols=54 Identities=6% Similarity=-0.106 Sum_probs=38.5
Q ss_pred hhcccCCCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccCCC
Q 015122 41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 41 ~~~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~~~ 101 (413)
+++.|+.|++. ..++|++.|.++|++|+|+.+||.++. ..|+ |..|..|||+.|
T Consensus 200 i~~~c~~c~~~-------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~ 260 (415)
T 1vjv_A 200 IEKRSDLTGAN-------SIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADM 260 (415)
T ss_dssp ---------CC-------CCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGG
T ss_pred hhhcccccCCc-------ccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHh
Confidence 45899999986 678999999999999999999999984 4676 667999999743
No 52
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=96.93 E-value=0.0001 Score=72.73 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=45.3
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhcccccccccc--Cccc---cCCcc-ccccCCC
Q 015122 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSEE-AIDVDMS 101 (413)
Q Consensus 43 ~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~--p~K~---~~~~~-~ldl~~~ 101 (413)
|.|+.|++. ..++|++.|.++|++|+|+.+||.+.. +.|+ +..|. .|||+.+
T Consensus 232 ~~C~~C~~~-------~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~ 289 (367)
T 2y6e_A 232 WYCPNCKKH-------QQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEF 289 (367)
T ss_dssp EEETTTTEE-------ECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGG
T ss_pred ccCCCCCCC-------ceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhh
Confidence 899999986 789999999999999999999999975 6777 55775 6999865
No 53
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=96.64 E-value=0.00025 Score=71.29 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=44.5
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhcccccccccc--Cccc---cCCc-cccccCCC
Q 015122 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDMS 101 (413)
Q Consensus 43 ~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~--p~K~---~~~~-~~ldl~~~ 101 (413)
|.|+.|++. ..++|++.|.++|++|+|+.+||.+.. ..|+ +..| +.|||+.|
T Consensus 269 ~~C~~C~~~-------~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~ 326 (396)
T 2gfo_A 269 FYCSHCRAR-------RDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQY 326 (396)
T ss_dssp EEETTTTEE-------ECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGG
T ss_pred cccCCcccc-------cceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhcccccc
Confidence 899999975 678999999999999999999999985 4566 5567 57999865
No 54
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=96.28 E-value=0.00081 Score=66.33 Aligned_cols=51 Identities=8% Similarity=-0.068 Sum_probs=41.1
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccCCC
Q 015122 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 43 ~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~~~ 101 (413)
|.|+.|++ ..++|++.|.++|++|+|+.+||.++. ..|+ +..|..|||+.|
T Consensus 172 ~~C~~c~~--------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~ 229 (353)
T 1nb8_A 172 YDAGEHGL--------QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEF 229 (353)
T ss_dssp EECGGGCE--------ECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGGG
T ss_pred ccCCcCcc--------EeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhhh
Confidence 78999985 468999999999999999999999874 6677 667889999754
No 55
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=95.83 E-value=0.002 Score=67.06 Aligned_cols=51 Identities=8% Similarity=-0.068 Sum_probs=43.8
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhcccccccccc----Cccc---cCCccccccCCC
Q 015122 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDMS 101 (413)
Q Consensus 43 ~~C~~C~~~~~~~~e~~~~~K~t~~~tfp~~L~v~~~r~~l~~----p~K~---~~~~~~ldl~~~ 101 (413)
|.|+.|++ ..++|+..|.++|++|+|+.+||.+.. ..|+ +..|..|||+.|
T Consensus 341 ~~C~~c~~--------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~ 398 (522)
T 2f1z_A 341 YDAGEHGL--------QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEF 398 (522)
T ss_dssp BCCGGGCS--------BCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGGG
T ss_pred eecCcCCc--------cceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchhh
Confidence 88999986 478999999999999999999999874 5676 667889999754
No 56
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=95.17 E-value=0.023 Score=54.44 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (413)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (413)
.+.|+.|++|||+++.|..||...+. +++.|++.||++
T Consensus 216 ~~~v~~l~~mgf~~~~~~~al~~~nW-d~~~A~e~L~~~ 253 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIVALSSKSW-DVETATELLLSN 253 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 56799999999999999999999887 999999999973
No 57
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=93.99 E-value=0.093 Score=39.38 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=38.5
Q ss_pred ccccCHHHHHHHHhCCCC---HHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 015122 110 EPEVDKELLKELEAMGFP---VARATRALHYSGNANVEAAVNWVVEHENDP 157 (413)
Q Consensus 110 ~~~~~~~~l~~L~~MGF~---~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd~ 157 (413)
.+.+.++.+.+|.+| || ...++.+|..++| +++.|++-|++..++.
T Consensus 5 ~~~~~ee~l~~L~em-FP~ld~~~I~~vL~a~~g-dvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 5 SSGCSEEDLKAIQDM-FPNMDQEVIRSVLEAQRG-NKDAAINSLLQMGEEP 53 (59)
T ss_dssp SSSSCHHHHHHHHHH-CSSSCHHHHHHHHTTTTT-CHHHHHHHHHHSSCCC
T ss_pred CCCCCHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHcCcCCC
Confidence 466789999999999 76 4778888888777 9999999999966553
No 58
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=93.22 E-value=0.12 Score=39.47 Aligned_cols=43 Identities=26% Similarity=0.490 Sum_probs=37.1
Q ss_pred cccCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 015122 111 PEVDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (413)
Q Consensus 111 ~~~~~~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (413)
..++.+.|..|.+ -|.+..-|++||..+++ |++.|++||-...
T Consensus 6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~G-Di~~Ai~~Lr~kg 49 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGYSFVNCKKALETCGG-DLKQAEIWLHKEA 49 (64)
T ss_dssp SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTS-CHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHHHh
Confidence 4567788888886 59999999999999998 9999999997653
No 59
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=88.65 E-value=0.33 Score=35.50 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=25.8
Q ss_pred HHHHHHHhCCCCHHHHH--HHHHHhCCCCHHHHHHHH
Q 015122 116 ELLKELEAMGFPVARAT--RALHYSGNANVEAAVNWV 150 (413)
Q Consensus 116 ~~l~~L~~MGF~~~~a~--kAL~~tgn~~~E~A~~Wl 150 (413)
++|+||++|||+..-.- +.| .+-|.++..|+|-|
T Consensus 12 ~al~qMl~MGF~negGWLt~LL-~~k~gDI~~aLD~l 47 (52)
T 1q02_A 12 ESLSQMLSMGFSDEGGWLTRLL-QTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHTTTCCCTTSHHHHHH-HHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCccccHHHHHH-HHccCCHHHHHHHh
Confidence 56899999999986663 545 44455899999876
No 60
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.03 E-value=0.48 Score=36.39 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=35.6
Q ss_pred cCHHHHHHHHhCCCCH---HHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 015122 113 VDKELLKELEAMGFPV---ARATRALHYSGNANVEAAVNWVVEHEND 156 (413)
Q Consensus 113 ~~~~~l~~L~~MGF~~---~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (413)
.-+..+.+|.+| ||. ..+++.|..+|+ +++.||+=|+...++
T Consensus 17 ~~~~~v~~L~~M-FP~lD~~vI~~vL~a~~G-~vd~aId~LL~ms~~ 61 (67)
T 2dhy_A 17 EFNQAMDDFKTM-FPNMDYDIIECVLRANSG-AVDATIDQLLQMNLE 61 (67)
T ss_dssp CSHHHHHHHHHH-CSSSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcCCC
Confidence 457889999999 864 788899999888 899999999986554
No 61
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=85.88 E-value=0.31 Score=34.76 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=25.2
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
+-+|.+||.+.....+-- +-|++. -.+++||.||.+
T Consensus 4 ~y~C~vCGyvyd~~~Gd~--------t~f~~l---P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDN--------VPFDQL---PDDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEECGGGGTT--------CCGGGS---CTTCBCTTTCCB
T ss_pred EEECCCCCeEEeCCcCCC--------cchhhC---CCCCcCcCCCCc
Confidence 358999999986543211 567665 456999999963
No 62
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=85.22 E-value=0.3 Score=35.03 Aligned_cols=42 Identities=24% Similarity=0.408 Sum_probs=31.7
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
-..+|..||..+.....-+.|.. +-|.. + ...|.|+.||+.+
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~-~~H~~--~----~~~~~C~~C~k~f 50 (66)
T 2drp_A 9 HTYRCKVCSRVYTHISNFCRHYV-TSHKR--N----VKVYPCPFCFKEF 50 (66)
T ss_dssp TEEECTTTCCEESSHHHHHHHHH-HHSSS--S----CCCEECTTTCCEE
T ss_pred cceECCCCcchhCCHHHHHHHHH-HHcCC--C----CcCeECCCCCCcc
Confidence 45789999999999999999987 43421 1 1348999999853
No 63
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.92 E-value=1.5 Score=34.84 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=32.4
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
-..+|..||..+.....-+.|...+||.. +. .-+.|+.||+.+
T Consensus 18 ~~~~C~~C~k~f~~~~~L~~H~~~~~h~~--~~----~~~~C~~C~~~f 60 (115)
T 2dmi_A 18 SKFRCKDCSAAYDTLVELTVHMNETGHYR--DD----NHETDNNNPKRW 60 (115)
T ss_dssp CSEEBSSSSCEESSHHHHHHHHHHTCCCB--CS----CCCCCCCCCSCC
T ss_pred CCEECCccCchhcCHHHHHHHHHHhCccc--cC----CCccCCCCCccc
Confidence 34689999999999999999998666632 21 225699999763
No 64
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=83.90 E-value=0.23 Score=36.30 Aligned_cols=43 Identities=23% Similarity=0.559 Sum_probs=27.3
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
+-+|.+||.+-.+..+--.+.-.-| +-|.+. -.+++||.||.+
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pG-t~f~~l---P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPG-TKFEDL---PDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTT-CCGGGS---CTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCC-CCHhHC---CCCCcCCCCCCC
Confidence 4689999999866544333333233 235554 456999999963
No 65
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=82.44 E-value=0.46 Score=32.81 Aligned_cols=38 Identities=24% Similarity=0.537 Sum_probs=30.0
Q ss_pred eecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
.+|..||..+.....-+.|.. + |.. ...|.|+.||+.+
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~-~-h~~-------~~~~~C~~C~~~f 39 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIR-T-HTD-------VRPYHCTYCNFSF 39 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHH-H-TSS-------CCCEECSSSSCEE
T ss_pred CcCCCCcCcCCCHHHHHHHHH-h-cCC-------CCCccCCCCCchh
Confidence 479999999999999999986 3 542 1248999999864
No 66
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=82.09 E-value=0.3 Score=35.68 Aligned_cols=43 Identities=16% Similarity=0.404 Sum_probs=26.7
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
+-+|.+||.+-.+..+--.+.-.-| +-|.+. -.+++||.||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pG-t~f~~l---P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPG-TKFEDL---PDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSS-CCTTSS---CTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCC-CchHHC---CCCCcCCCCCCc
Confidence 4689999999865443222222222 236555 456999999964
No 67
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=81.78 E-value=2.4 Score=29.26 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=32.0
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
-..+|..|+..+.....-+.|.. +-|.. ...|.|+.||+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~-~~H~~-------~k~~~C~~C~k~F 51 (54)
T 2eps_A 11 KPYICQSCGKGFSRPDHLNGHIK-QVHTS-------ERPHKCQVWVSGP 51 (54)
T ss_dssp CCEECSSSCCEESSHHHHHHHHH-HTSCC-------CCCCCSSSSCCSS
T ss_pred CCeECCCCCcccCCHHHHHHHHH-HhcCC-------CCCccCCCCCCCC
Confidence 45789999999999999999975 44643 1248999999864
No 68
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=81.25 E-value=0.86 Score=33.70 Aligned_cols=42 Identities=19% Similarity=0.380 Sum_probs=31.8
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
-..+|..|+..+.....-+.|.. +-|.. + ...|.|+.|++.|
T Consensus 14 k~~~C~~C~k~f~~~~~L~~H~~-~~h~~--~----~~~~~C~~C~~~f 55 (77)
T 2ct1_A 14 KPYECYICHARFTQSGTMKMHIL-QKHTE--N----VAKFHCPHCDTVI 55 (77)
T ss_dssp CSEECTTTCCEESCHHHHHHHHH-HHSSS--S----CSSEECSSSSCEE
T ss_pred CCeECCCcCchhCCHHHHHHHHH-HhcCC--C----CCccCCCCCCCcc
Confidence 35789999999999999999976 33432 1 1348999999853
No 69
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=81.08 E-value=0.31 Score=38.89 Aligned_cols=43 Identities=16% Similarity=0.390 Sum_probs=27.0
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
+-+|.+||.+-.+..+--...-.-| +-|.+. -.+++||.||-+
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pG-T~fedl---PddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAG-TRWDDI---PDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTT-CCTTTS---CTTCCCTTTCCC
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCC-CChhHC---CCCCcCCCCCCC
Confidence 6799999999866543222222122 235555 446999999964
No 70
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=80.80 E-value=0.28 Score=36.20 Aligned_cols=43 Identities=19% Similarity=0.439 Sum_probs=27.0
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
+-+|.+||.+-.+..+--.+.-.-| +-|.+. -.+++||.||.+
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pG-t~f~~l---P~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAG-TRWEDI---PADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTT-CCGGGS---CTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCC-CChhHC---CCCCcCCCCCCC
Confidence 4689999999866543322222222 235554 456999999964
No 71
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=79.49 E-value=1.1 Score=31.18 Aligned_cols=38 Identities=18% Similarity=0.477 Sum_probs=30.3
Q ss_pred eecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
.+|..||..+.....-+.|.. + |.. ...|.|+.||+.+
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~-~-h~~-------~~~~~C~~C~~~f 40 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYR-S-HTN-------EKPYPCGLCNRAF 40 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHH-T-TTS-------SCSEECTTTCCEE
T ss_pred CcCCCCccccCCHHHHHHHHH-H-hCC-------CCCccCCCCCCcc
Confidence 579999999999999999986 3 542 1248999999864
No 72
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=79.34 E-value=1.4 Score=33.56 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=13.6
Q ss_pred eeecCcccccccchHHHHHHHh
Q 015122 5 SLKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~ 26 (413)
..+|..|+..+.....-+.|..
T Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~ 28 (95)
T 2yt9_A 7 GVACEICGKIFRDVYHLNRHKL 28 (95)
T ss_dssp CEECSSSCCEESSSHHHHHHHH
T ss_pred CeECCCCCCccCChHHHHHHHH
Confidence 4566666666666666666654
No 73
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=79.13 E-value=3.6 Score=29.57 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=33.3
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 015122 115 KELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (413)
Q Consensus 115 ~~~l~~L~~M--GF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (413)
++-+..|.+| ..+...++.+|...+| +++.|++-|++-.++
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~G-d~d~Ai~~LL~~~~~ 47 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNN-DLDLTIGLLLKENDD 47 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTT-CSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcccc
Confidence 4668899999 3446888999999887 999999999886444
No 74
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=79.05 E-value=0.32 Score=39.32 Aligned_cols=43 Identities=16% Similarity=0.426 Sum_probs=26.6
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
+-+|.+||.+-.+..+--.+.-.-| +-|.+. -.+++||.||-+
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pG-T~fedl---PddW~CPvCga~ 77 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPG-TRFEDI---PDDWCCPDCGAT 77 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSC-CCGGGC---CTTCCCSSSCCC
T ss_pred eEECCCCCeEecCCcCCcccCcCCC-CChhHC---CCCCCCCCCCCC
Confidence 6799999999865433222222122 235554 456999999964
No 75
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=78.39 E-value=0.8 Score=33.65 Aligned_cols=38 Identities=26% Similarity=0.523 Sum_probs=30.3
Q ss_pred eecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
-+|..||+.+.....=+.|.. .|+. .--|.|+.||+.|
T Consensus 5 y~C~~C~k~F~~~~~L~~H~~--~Ht~-------ekp~~C~~C~k~F 42 (60)
T 4gzn_C 5 FFCNFCGKTYRDASGLSRHRR--AHLG-------YRPRSCPECGKCF 42 (60)
T ss_dssp EECTTTCCEESSHHHHHHHHH--HHHT-------CCCEECTTTCCEE
T ss_pred ccCCCCCCEeCCHHHHHHHHH--HhCC-------CcCeECCCCCCCc
Confidence 589999999999999899875 3642 1248999999864
No 76
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=77.56 E-value=0.39 Score=37.23 Aligned_cols=43 Identities=16% Similarity=0.464 Sum_probs=26.9
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
+-+|.+||.+-.+..+--.+.-.-| +-|.+. -.+++||.||.+
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pG-T~f~~l---Pddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPG-TPFVDL---SDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSS-CCGGGS---CTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCC-CchhhC---CCCCcCCCCCCC
Confidence 5799999999865543222222222 235554 456999999964
No 77
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=77.48 E-value=1.6 Score=37.88 Aligned_cols=39 Identities=23% Similarity=0.532 Sum_probs=23.9
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhh---------hhcccCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAV---------LNLVCATCGKP 51 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~---------~~~~C~~C~~~ 51 (413)
-+.+|.+||....... -+..+.+..+.. ..+.||.||++
T Consensus 69 ~~~~C~~CG~~~~~~~---------~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 69 AVFKCRNCNYEWKLKE---------VKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp CEEEETTTCCEEEGGG---------CTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred CcEECCCCCCEEeccc---------ccccccccccccccccccccccCCcCccccCC
Confidence 4689999999876522 112333332221 14789999986
No 78
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=77.47 E-value=6 Score=29.52 Aligned_cols=35 Identities=31% Similarity=0.371 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHH
Q 015122 223 AKRIEEENERKRILALRKAEKEE-EKRAREKIRQKL 257 (413)
Q Consensus 223 ~k~~~ee~e~k~~~e~rkrEK~e-~~~ar~ri~~qI 257 (413)
.|...+-.+..+.++.+|++|-. ....|+++|+.|
T Consensus 11 ~kke~E~~eAlrq~Ee~Rk~Kh~kME~ERE~mRQ~I 46 (63)
T 3rk3_E 11 AKKFEEAQEALRQAEEERKAKYAKMEAEREAVRQGI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666677777777743 345688888888
No 79
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=77.37 E-value=1.3 Score=32.13 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=32.1
Q ss_pred CceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 3 ~~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
.-..+|..|+..+.....-+.|.. + |.. ...|.|+.|++.+
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~-~-H~~-------~~~~~C~~C~~~f 47 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHER-I-HCT-------DRPFKCNYCSFDT 47 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHG-G-GCC-------SCSEECSSSSCEE
T ss_pred CCCeECCCCCcccCCHHHHHHHHH-H-cCC-------CCCEeCCCCCCcc
Confidence 346799999999999999999986 3 642 1238999999863
No 80
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=77.30 E-value=0.53 Score=34.68 Aligned_cols=43 Identities=19% Similarity=0.448 Sum_probs=27.0
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
+-+|.+||.+-....+--.+.-.- -+.|.+. -.+++||.||-.
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~p-Gt~fe~l---P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNP-GTDFKDI---PDDWVCPLCGVG 45 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCT-TCCGGGS---CTTCBCTTTCCB
T ss_pred ceECCCCCeEECCCcCCcccCcCC-CCChhHC---CCCCcCcCCCCc
Confidence 358999999986654322222212 2456555 456999999963
No 81
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=76.83 E-value=2 Score=41.85 Aligned_cols=39 Identities=28% Similarity=0.564 Sum_probs=33.5
Q ss_pred cCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015122 113 VDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVE 152 (413)
Q Consensus 113 ~~~~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~ 152 (413)
++..+|..|-+ -|.+.--|+|||..++| |++.|++||-.
T Consensus 3 ~ta~~VKeLRe~TGagmmdCKKAL~e~~G-D~ekAie~LR~ 42 (291)
T 1xb2_B 3 SSKELLMKLRRKTGYSFINCKKALETCGG-DLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 34567778875 49999999999999998 99999999986
No 82
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=76.18 E-value=0.53 Score=43.86 Aligned_cols=37 Identities=30% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015122 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152 (413)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~ 152 (413)
.+.++.|.+|||+++.+..||...|- +++.|++-|++
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~-~~~~~~~~l~~ 214 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANW-NETLALNTLLE 214 (216)
T ss_dssp --------------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCC-chHHHHHHHhc
Confidence 57889999999999999999988776 89999988775
No 83
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=73.21 E-value=1.6 Score=35.46 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=33.1
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
-..+|..||..+.....=+.|.. +.|....+. .-|.|+.||+.|
T Consensus 17 kpy~C~~Cgk~F~~~~~L~~H~r-~~H~~~~~e----kpf~C~~Cgk~F 60 (102)
T 2ghf_A 17 GGYECKYCTFQTPDLNMFTFHVD-SEHPNVVLN----SSYVCVECNFLT 60 (102)
T ss_dssp SSEECSSCSCEESCHHHHHHHHH-HHCSSCCCS----CCEEETTTTEEE
T ss_pred cCcCCCCCCCccCCHHHHHHHHH-hhCCCCCCC----CCcCCCCCCccc
Confidence 34689999999999888889976 457553222 239999999864
No 84
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=72.35 E-value=2.2 Score=31.67 Aligned_cols=43 Identities=28% Similarity=0.577 Sum_probs=31.4
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCC-CCcchhhhhhcccCCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSN-FSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~-F~e~~e~~~~~~C~~C~~~~ 52 (413)
...+|..|+..+.....-+.|.. +-|.. +.+ .-|.|+.|++.+
T Consensus 14 k~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~~-----~~~~C~~C~~~f 57 (86)
T 1x6h_A 14 KPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVP-----AAFVCSKCGKTF 57 (86)
T ss_dssp CCEECSSSSCEESSHHHHHHHHH-HTTCSSCCC-----CCEECSSSCCEE
T ss_pred CCCcCCCCCCccCCHHHHHHHHH-HhcCCcCCC-----cceECCCCCChh
Confidence 45789999999999999999986 33321 111 238999999853
No 85
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=71.57 E-value=1.9 Score=35.03 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=29.5
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
..+|..||..+.....-+.|.. + | + -.|.|+.||+.|
T Consensus 74 ~~~C~~C~k~f~~~~~l~~H~~-~-H----~-----~~~~C~~C~k~f 110 (129)
T 2wbt_A 74 QFVCPLCLMPFSSSVSLKQHIR-Y-T----E-----HTKVCPVCKKEF 110 (129)
T ss_dssp SEECTTTCCEESSHHHHHHHHH-H-T----C-----CCCBCTTTCCBC
T ss_pred CeECCCCCcccCCHhHHHHHHH-H-C----C-----CCCCCCCCCccc
Confidence 3689999999999888889976 3 6 1 138999999865
No 86
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=71.52 E-value=1.3 Score=35.49 Aligned_cols=43 Identities=30% Similarity=0.492 Sum_probs=23.1
Q ss_pred eecCcccccccchHHHHHHHhhhccCCCCcc-------hhhhh--hcccCCCCCC
Q 015122 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSES-------TEAVL--NLVCATCGKP 51 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~-------~e~~~--~~~C~~C~~~ 51 (413)
-+|..||..+.-..=--+-.. --||.|. -.... -|+||.||.-
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~---~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEE 60 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLI---IENFEEIVKDRERFLAQVEEFVFKCPVCGEE 60 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTT---CSTHHHHTTCHHHHHHHHHHSEEECTTTCCE
T ss_pred ccCCcCCCccCHHHHHHHHHh---hccHHHHHhhHHHHHHHHHHHhhcCCCccHH
Confidence 589999999843221111111 2344443 01122 2899999974
No 87
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=71.34 E-value=2.6 Score=33.24 Aligned_cols=42 Identities=29% Similarity=0.578 Sum_probs=32.2
Q ss_pred eeecCcccccc-cchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCCCCcc
Q 015122 5 SLKCGDCGALL-RSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKT 56 (413)
Q Consensus 5 ~l~C~~C~~~~-~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~~~~~ 56 (413)
..+|..||..+ .....=+.|... | ++ .-|.|+.||+.|....
T Consensus 34 ~~~C~~C~k~F~~~~~~L~~H~~~--h---~~-----k~~~C~~Cgk~F~~~~ 76 (96)
T 2ctd_A 34 SVSCPTCQAVGRKTIEGLKKHMEN--C---KQ-----EMFTCHHCGKQLRSLA 76 (96)
T ss_dssp CEECTTTCSCEESSHHHHHHHHHH--H---CC-----CCCCCSSSCCCCSSHH
T ss_pred CcCCCCCCCCcccCHHHHHHHHHH--H---CC-----CCeECCCCCCeeCCHH
Confidence 46899999999 899888899762 5 33 2489999999764433
No 88
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=70.88 E-value=5.3 Score=29.89 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.6
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 113 VDKELLKELEAMGFPVARATRALHYS 138 (413)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~t 138 (413)
+.+++++.|+.+||++..|.+|+...
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44689999999999999999998764
No 89
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=70.09 E-value=2 Score=31.68 Aligned_cols=40 Identities=25% Similarity=0.626 Sum_probs=31.1
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
-..+|..|+..+.....-+.|.. .|.. ...|.|+.|++.+
T Consensus 17 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f 56 (77)
T 2cot_A 17 RRYKCDECGKSFSHSSDLSKHRR--THTG-------EKPYKCDECGKAF 56 (77)
T ss_dssp CSSBCSSSCCBCSCHHHHHHHHT--TTCC-------SCSEECSSSCCEE
T ss_pred CCEECCCCCcccCCHHHHHHHHH--HcCC-------CcCeeCCCCCCcc
Confidence 35689999999999999899976 2542 1248999999864
No 90
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=70.06 E-value=2.2 Score=32.39 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=12.3
Q ss_pred eecCcccccccchHHHHHHHh
Q 015122 6 LKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~ 26 (413)
.+|..|+..+.....-+.|..
T Consensus 9 ~~C~~C~~~f~~~~~l~~H~~ 29 (96)
T 2dmd_A 9 HKCEVCGKCFSRKDKLKTHMR 29 (96)
T ss_dssp CCBTTTTBCCCCHHHHHHHGG
T ss_pred eECCCCCCccCCHHHHHHHHH
Confidence 456666666665555555554
No 91
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=70.04 E-value=2.4 Score=30.83 Aligned_cols=40 Identities=23% Similarity=0.506 Sum_probs=31.3
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
-..+|..|+..+.....-+.|.. + |.. ...|.|+.|++.|
T Consensus 13 k~~~C~~C~k~f~~~~~L~~H~~-~-h~~-------~~~~~C~~C~~~f 52 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILVQHQR-V-HTG-------EKPYKCLECGKAF 52 (72)
T ss_dssp CCEECSSSCCEESSHHHHHHHHH-G-GGC-------SCCEECSSSCCEE
T ss_pred CCccCCCCCCccCCHHHHHHHHH-h-cCC-------CCCeECCCCCccc
Confidence 45789999999999999999976 2 532 1348999999864
No 92
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=69.90 E-value=7.6 Score=31.96 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=42.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH----hCC--CCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 015122 116 ELLKELEAMGFPVARATRALHY----SGN--ANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQ 188 (413)
Q Consensus 116 ~~l~~L~~MGF~~~~a~kAL~~----tgn--~~~E~A~~Wl~~h~dd~d~d~p~~~~~~~~~~~~k~~lT~eEk~~k~~ 188 (413)
..+...++|||+.....+++.. ||. .+++.-+.=|+...++. ..+.. +. .+ ...++++||...+++
T Consensus 29 ~vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e~~--~~~~~-~~-~s---~~~~~s~eEqLrrLq 100 (104)
T 2kna_A 29 PMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQKDS--MQDES-SQ-TS---LQKEISTEEQLRRLQ 100 (104)
T ss_dssp THHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSC--CCCCS-SC-CC---CCCCCCHHHHGGGTC
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHhh--ccccc-cc-cc---ccCCCCHHHHHHHHH
Confidence 3578889999999999877654 554 57888888888766653 22211 11 11 235778877655443
No 93
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=69.49 E-value=3.8 Score=37.73 Aligned_cols=37 Identities=35% Similarity=0.435 Sum_probs=31.3
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 116 ELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEH 153 (413)
Q Consensus 116 ~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (413)
.+|..|-+ -|.+.--|++||..+++ |++.|++||-..
T Consensus 5 ~~VKeLRe~TGagmmdCKkAL~e~~G-D~ekAie~LR~k 42 (196)
T 1aip_C 5 ELIKKLREATGAGMMDVKRALEDAGW-DEEKAVQLLRER 42 (196)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHHc
Confidence 45667764 48999999999999998 999999999754
No 94
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=69.49 E-value=1.9 Score=31.46 Aligned_cols=40 Identities=25% Similarity=0.489 Sum_probs=30.8
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
-..+|..|+..+.....-+.|.. .|.. ..-|.|+.||+.+
T Consensus 16 ~~~~C~~C~k~f~~~~~l~~H~~--~H~~-------~~~~~C~~C~k~f 55 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLASHKT--VHTG-------EKPYRCNICGAQF 55 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHHHHHH--HHCC-------CCSEECTTTCCEE
T ss_pred CCeECCCCCceeCCHHHHHHHHH--HcCC-------CCCEECCCCCchh
Confidence 34689999999999999899976 2532 1238999999864
No 95
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=69.01 E-value=2.1 Score=33.59 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=30.4
Q ss_pred eecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
-.|..||+.+.....=+.|.. .|.. + .-|.|+.||+.|
T Consensus 29 h~C~~Cgk~F~~~~~L~~H~~--~H~~--~-----k~~~C~~C~k~F 66 (85)
T 2lv2_A 29 HLCPVCGESFASKGAQERHLR--LLHA--A-----QVFPCKYCPATF 66 (85)
T ss_dssp EECTTSCCEESSHHHHHHHHH--TTSC--S-----SSEECTTSSCEE
T ss_pred EECCCCCCCcCcHHHHhhhhh--hccC--C-----CccCCCCCCCEe
Confidence 579999999999999999976 3542 2 249999999864
No 96
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.72 E-value=2.6 Score=30.97 Aligned_cols=44 Identities=30% Similarity=0.536 Sum_probs=31.3
Q ss_pred CceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 3 ~~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
.-..+|..|+..+.....-+.|.. + |..-. ....|.|+.||+.|
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~H~~-~-h~~~~----~~~~~~C~~C~k~f 48 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLNWHQR-K-HAETV----AALRFPCEFCGKRF 48 (78)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHH-H-HHHHT----TTCCEECTTTCCEE
T ss_pred CcCeECCCCCCeeCCHHHHHHHHH-H-hhccC----CCcccCCCCCCchh
Confidence 345799999999999888888865 2 32110 12349999999853
No 97
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=68.53 E-value=1.6 Score=29.95 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=29.7
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
..+|..||..+.....-+.|.. + |.. ...|.|+.||+.+
T Consensus 4 ~~~C~~C~~~f~~~~~l~~H~~-~-h~~-------~~~~~C~~C~~~f 42 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLNIHLR-T-HTG-------EKPYKCEFCEYAA 42 (57)
T ss_dssp -CBCTTTCCBCSCHHHHHHHHH-H-HHC-------CCCEECSSSSCEE
T ss_pred CccCCCCcchhCChHHHHHHHH-H-cCC-------CCCcCCCCCcchh
Confidence 4689999999999999999976 2 432 1238999999853
No 98
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.50 E-value=2.4 Score=30.44 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=28.6
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccC-CCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA-TCGKPC 52 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~-~C~~~~ 52 (413)
..+|..||..+. ...-+.|...+| + .-|.|+ .||+.+
T Consensus 10 ~~~C~~C~k~f~-~~~L~~H~~~~~-----~-----~p~~C~~~C~k~f 47 (66)
T 2eod_A 10 TQPCTYCTKEFV-FDTIQSHQYQCP-----R-----LPVACPNQCGVGT 47 (66)
T ss_dssp EEECSSSCCEEE-HHHHHHHHHHCS-----S-----SEEECTTCCSCCE
T ss_pred CeeccccCCccC-HHHHHHHHHHcC-----C-----cCccCCcccCccc
Confidence 478999999999 888889977321 1 238999 999863
No 99
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=68.22 E-value=4.6 Score=26.27 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=28.6
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCG 49 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~ 49 (413)
-..+|..|+..+.....-+.|.. .|.. ...|.|+.||
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~--~H~~-------~~~~~C~~cg 45 (45)
T 2epq_A 9 KPYSCPVCGLRFKRKDRMSYHVR--SHDG-------SVGKSGPSSG 45 (45)
T ss_dssp CSSEETTTTEECSCHHHHHHHHH--HHSC-------CCCCCCCCCC
T ss_pred CCCcCCCCCcccCCHHHHHHHHH--HccC-------CCCCCCcCCC
Confidence 35689999999999888888976 2543 2348999997
No 100
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=67.83 E-value=1.7 Score=36.03 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=29.0
Q ss_pred ecCcccccc----cchHHHHHHHhhhccCC---CCcchhhhhhcccCCCCC
Q 015122 7 KCGDCGALL----RSVQEAQEHAELTSHSN---FSESTEAVLNLVCATCGK 50 (413)
Q Consensus 7 ~C~~C~~~~----~~~~~aq~h~~~tgh~~---F~e~~e~~~~~~C~~C~~ 50 (413)
.|..||.|+ .++.-|..|.++|||.- |... .....|=.|+.
T Consensus 36 lCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~---~~~vwcY~cd~ 83 (102)
T 2ida_A 36 ICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPP---EGWGWCYVDEV 83 (102)
T ss_dssp EESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSC---SCEEEETTTTE
T ss_pred eeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecC---CCCEEEcCCCc
Confidence 588899887 35677999999999983 3221 13367777764
No 101
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=67.25 E-value=6.2 Score=28.17 Aligned_cols=32 Identities=28% Similarity=0.265 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHH
Q 015122 226 IEEENERKRILALRKAEKEE-EKRAREKIRQKL 257 (413)
Q Consensus 226 ~~ee~e~k~~~e~rkrEK~e-~~~ar~ri~~qI 257 (413)
..+-.+..+.++.+|++|-. ....|+++|++|
T Consensus 11 e~E~~eAlreaEe~Rk~Kh~kmE~eRE~mRq~I 43 (49)
T 1kil_E 11 EEERQEALRQAEEERKAKYAKMEAEREVMRQGI 43 (49)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666633 345678888888
No 102
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=67.19 E-value=2.3 Score=31.86 Aligned_cols=9 Identities=33% Similarity=1.217 Sum_probs=5.9
Q ss_pred cccCCCCCC
Q 015122 43 LVCATCGKP 51 (413)
Q Consensus 43 ~~C~~C~~~ 51 (413)
|.|+.||+.
T Consensus 63 ~~C~~C~~~ 71 (90)
T 1a1h_A 63 FACDICGRK 71 (90)
T ss_dssp EECTTTCCE
T ss_pred ccCCCCCch
Confidence 667777664
No 103
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=66.20 E-value=6.8 Score=32.28 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=33.2
Q ss_pred cccCHHHHHHHH-hCCCCHHHHHHHHHHhCCCCHHHHHHHH
Q 015122 111 PEVDKELLKELE-AMGFPVARATRALHYSGNANVEAAVNWV 150 (413)
Q Consensus 111 ~~~~~~~l~~L~-~MGF~~~~a~kAL~~tgn~~~E~A~~Wl 150 (413)
..++++-++.++ .+|-|+..|.+||..++| ++-.|+-+|
T Consensus 62 ~~i~~edi~lv~~q~~vs~~~A~~aL~~~~g-Div~Ai~~L 101 (102)
T 1tr8_A 62 MEIPEDDIELVMNQTGASREDATRALQETGG-DLAEAIMRL 101 (102)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHh
Confidence 568888888887 589999999999999988 888888665
No 104
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.95 E-value=2.8 Score=32.71 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=30.9
Q ss_pred ceeecCccccccc-chHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 4 VSLKCGDCGALLR-SVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 4 ~~l~C~~C~~~~~-~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
-..+|..||..+. ....=+.|.. + |.. ...-|.|+.||+.|
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~~H~~-~-h~~------~~~~~~C~~C~k~F 64 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLKKHME-V-CQK------LQDALKCQHCRKQF 64 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHHHHHH-H-HHH------HHHHHSCSSSCCCC
T ss_pred CCcCCCCCCCChhhhHHHHHHHHH-H-HcC------CCCCEECCCCCCcc
Confidence 3468999999999 8888888876 2 421 02359999999964
No 105
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=65.79 E-value=4 Score=37.83 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=25.7
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCC
Q 015122 112 EVDKELLKELEAMGFPVARATRALHYSGN 140 (413)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn 140 (413)
..+.+.++.|.+|||+.+.+..||...|.
T Consensus 167 g~~~~~v~~~~~mg~~~~~~~~al~~~~~ 195 (215)
T 1tte_A 167 GIDHDLIDEFESQGFEKDKIVEVLRRLGV 195 (215)
T ss_dssp CCSHHHHHHHHHHTCCHHHHHHHHHHSCC
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 35789999999999999999999988764
No 106
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=65.65 E-value=7.5 Score=25.74 Aligned_cols=38 Identities=26% Similarity=0.438 Sum_probs=29.7
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
-..+|..|+..+.....-+.|.. .|.. + ..|.|+.||+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C~k 48 (48)
T 2epr_A 11 KQVACEICGKIFRDVYHLNRHKL--SHSG--E-----KPYSSGPSSG 48 (48)
T ss_dssp CSEEETTTTEEESSHHHHHHHGG--GSCS--C-----CCCCSCCCCC
T ss_pred cCeeCCCCCcccCCHHHHHHHHH--hcCC--C-----CCccCCCCCC
Confidence 35789999999999999889965 3642 1 2489999986
No 107
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=64.72 E-value=2.3 Score=31.18 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=10.4
Q ss_pred ecCcccccccchHHHHHHHh
Q 015122 7 KCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 7 ~C~~C~~~~~~~~~aq~h~~ 26 (413)
+|..||..+.....-+.|..
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~ 22 (82)
T 2kmk_A 3 DCKICGKSFKRSSTLSTHLL 22 (82)
T ss_dssp ECSSSCCEESSHHHHHHHHH
T ss_pred cCCCCcccccCchhHHHHHH
Confidence 45555555555555445443
No 108
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=63.93 E-value=3.7 Score=34.14 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=34.1
Q ss_pred CceeecCcccccccchHHHHHHHhhhccCCCCcch-hhhhhcccCCCCCCCCCcc
Q 015122 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSEST-EAVLNLVCATCGKPCRSKT 56 (413)
Q Consensus 3 ~~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~-e~~~~~~C~~C~~~~~~~~ 56 (413)
.+...|..||..+.....-+.|.. +-|..=.... ....-|.|+.|++.+.+..
T Consensus 23 ~~~~~C~~C~~~f~~~~~L~~H~~-~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~ 76 (155)
T 2rpc_A 23 QLSRPKKSCDRTFSTMHELVTHVT-MEHVGGPEQNNHVCYWEECPREGKSFKAKY 76 (155)
T ss_dssp CCSSSCCCCCCCBSSHHHHHHHHH-TTTSCCTTCSSCCCCBTTCTTSSCCCSSHH
T ss_pred hcccccccCCcccCCHHHHHHHHH-hhcCCCcccCCccccccCCCCcccccCCHH
Confidence 456789999999999999999987 4454311110 0001268888888654433
No 109
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.24 E-value=3.7 Score=31.11 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=31.3
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcch-hhhhhcccCCCCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSEST-EAVLNLVCATCGKPCR 53 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~-e~~~~~~C~~C~~~~~ 53 (413)
.-+|..|+..+.....-+.|.. +-|..-.... -.-.-|.|+.||+.|.
T Consensus 25 ~~~C~~C~k~f~~~~~L~~H~~-~~H~~~~~~~~~~c~~~~C~~C~k~f~ 73 (95)
T 2ej4_A 25 SRPKKSCDRTFSTMHELVTHVT-MEHVGGPEQNNHVCYWEECPREGKSFK 73 (95)
T ss_dssp SSSCCCCCCCCSSHHHHHHHHH-HTTTCCTTCSCCCCCCTTCSSTTCCCS
T ss_pred CCcccccccccCCHHHHHHHHH-HhccCCCCCCccceeccCCCCCCcccC
Confidence 3469999999999999999976 4354311100 0000179999999753
No 110
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=62.27 E-value=3.4 Score=34.50 Aligned_cols=27 Identities=33% Similarity=0.871 Sum_probs=19.6
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhc-ccCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNL-VCATCGKP 51 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~-~C~~C~~~ 51 (413)
...+|.+||..+... ...+ .||.||.+
T Consensus 72 ~~~~C~~CG~~~e~~---------------------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKPN---------------------ALDYGVCEKCHSK 99 (119)
T ss_dssp CEEECSSSSCEECSC---------------------CSTTCCCSSSSSC
T ss_pred ceEEcCCCCCEEeCC---------------------CCCCCcCccccCC
Confidence 367899999887541 1236 89999986
No 111
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=61.51 E-value=3.2 Score=32.81 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=13.7
Q ss_pred eeecCcccccccchHHHHHHHh
Q 015122 5 SLKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~ 26 (413)
..+|..|+..+.....-+.|..
T Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~ 28 (124)
T 2dlq_A 7 GVECPTCHKKFLSKYYLKVHNR 28 (124)
T ss_dssp SCCCTTTCCCCSSHHHHHHHHH
T ss_pred CCCCCCCCCcCCCHHHHHHHHH
Confidence 3566666666666666666654
No 112
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=60.94 E-value=5.7 Score=30.69 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=14.1
Q ss_pred eecCcccccccchHHHHHHHh
Q 015122 6 LKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~ 26 (413)
.+|..|+..+.....-+.|..
T Consensus 18 ~~C~~C~~~f~~~~~l~~H~~ 38 (106)
T 2ee8_A 18 FICKFCGRHFTKSYNLLIHER 38 (106)
T ss_dssp CBCSSSCCBCSSHHHHHHHHH
T ss_pred eECCCCCCccCCHHHHHHHHH
Confidence 467777777766666666654
No 113
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=60.61 E-value=4.9 Score=31.08 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=33.0
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCCCCcccc
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTET 58 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~~~~~e~ 58 (413)
..+|..|+..+.....-+.|.. .|.. ...|.|+.|++.+.+....
T Consensus 45 ~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f~~~~~L 89 (106)
T 2ee8_A 45 PYTCDICHKAFRRQDHLRDHRY--IHSK-------EKPFKCQECGKGFCQSRTL 89 (106)
T ss_dssp CCBCSSSCCBCSCHHHHHHHGG--GSCC-------CCTTSCSSSCCCCSSHHHH
T ss_pred CcCCCCccchhCCHHHHHHHHH--HhCC-------CCCeECCCcCCcccCHHHH
Confidence 4689999999999999999965 3432 1248999999875444333
No 114
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=58.98 E-value=7.9 Score=27.48 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=24.6
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
-..+|..||..+.....-+ .-|.. ...|.|+.||+.+
T Consensus 13 k~~~C~~C~k~F~~~~~l~-----~~H~~-------~k~~~C~~C~k~f 49 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQ-----LFDPM-------TGTFRCTFCHTEV 49 (62)
T ss_dssp SEEECSSSCCEEEHHHHHH-----HEETT-------TTEEBCSSSCCBC
T ss_pred CCccCCCCCchhccHHHhH-----hhcCC-------CCCEECCCCCCcc
Confidence 3578999999996543222 33532 1248999999864
No 115
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=58.62 E-value=5.7 Score=30.95 Aligned_cols=40 Identities=28% Similarity=0.392 Sum_probs=29.5
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCCCCc
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~~~~ 55 (413)
..+|..|+..+.....-+.|.. + |. ..|.|+.|++.+...
T Consensus 16 ~~~C~~C~~~f~~~~~l~~H~~-~-H~---------~~~~C~~C~~~f~~~ 55 (107)
T 1wjp_A 16 VYQCRLCNAKLSSLLEQGSHER-L-CR---------NAAVCPYCSLRFFSP 55 (107)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHH-H-HH---------HSBCCTTTCCCBSSH
T ss_pred CeECCCCCCccCCHHHHHHHHH-H-CC---------CCccCCCCCCccCCH
Confidence 4689999999988888888877 3 51 247888888865333
No 116
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=57.59 E-value=3.3 Score=31.27 Aligned_cols=41 Identities=22% Similarity=0.515 Sum_probs=31.1
Q ss_pred eecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCCCCc
Q 015122 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~~~~ 55 (413)
.+|..||..+.....-+.|.. + |.. + ..|.|+.||+.+.+.
T Consensus 4 ~~C~~C~k~f~~~~~L~~H~~-~-H~~--~-----~~~~C~~C~k~f~~~ 44 (88)
T 1llm_C 4 FQCRICMRNFSRSDHLTTHIR-T-HTG--E-----KPFACDICGRKFARS 44 (88)
T ss_dssp EECTTTCCEESCHHHHHHHHH-H-HHC--C-----CCEECTTTCCEESSH
T ss_pred CcCCCCCCccCCHHHHHHHHH-H-cCC--C-----CCccCCCCCCccCCH
Confidence 589999999999999999976 3 532 1 238999999865333
No 117
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=54.94 E-value=3.8 Score=32.04 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=31.0
Q ss_pred eecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCCCCc
Q 015122 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~~~~ 55 (413)
.+|..|+..+.....-+.|. + |.. ..-|.|+.|++.|...
T Consensus 43 ~~C~~C~~~f~~~~~l~~H~--~-H~~-------~~~~~C~~C~~~f~~~ 82 (107)
T 1wjp_A 43 AVCPYCSLRFFSPELKQEHE--S-KCE-------YKKLTCLECMRTFKSS 82 (107)
T ss_dssp BCCTTTCCCBSSHHHHHHHH--H-HCS-------TGGGEEGGGTEECSSH
T ss_pred ccCCCCCCccCCHHHHHHHH--H-cCC-------CCCccCccccchhCCH
Confidence 58999999999999999997 3 652 1348999999865333
No 118
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=54.68 E-value=4.5 Score=31.59 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=12.3
Q ss_pred eeecCcccccccchHHHHHHHh
Q 015122 5 SLKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~ 26 (413)
..+| .|+..+.....-+.|..
T Consensus 10 ~~~C-~C~~~f~~~~~l~~H~~ 30 (110)
T 2csh_A 10 LYPC-QCGKSFTHKSQRDRHMS 30 (110)
T ss_dssp CEEC-TTSCEESSHHHHHHHHH
T ss_pred CEec-cCCCccCCHHHHHHHHH
Confidence 3456 56666666666555554
No 119
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=54.40 E-value=6.1 Score=29.75 Aligned_cols=45 Identities=20% Similarity=0.445 Sum_probs=32.7
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCCCCc
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~~~~ 55 (413)
-..+|..|+..+.....-+.|.. + |..-. ...|.|+.|++.+.+.
T Consensus 34 ~~~~C~~C~~~f~~~~~l~~H~~-~-h~~~~-----~~~~~C~~C~~~f~~~ 78 (95)
T 2yt9_A 34 KPYSCPVCGLRFKRKDRMSYHVR-S-HDGSV-----GKPYICQSCGKGFSRP 78 (95)
T ss_dssp CSEECSSSCCEESCHHHHHHHHH-H-HCCCC-----CSSBCCSSSCCCBSSH
T ss_pred CCCcCCCCCCccCCHHHHHHHHH-H-hcCCC-----CCceECCCccchhCCH
Confidence 35789999999999999999986 3 32211 1348999999875333
No 120
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=53.28 E-value=4.9 Score=30.39 Aligned_cols=42 Identities=21% Similarity=0.445 Sum_probs=31.9
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCCCCc
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~~~~ 55 (413)
..+|..|+..+.....-+.|.. + |.. ...|.|+.|++.+.+.
T Consensus 36 ~~~C~~C~~~f~~~~~l~~H~~-~-h~~-------~~~~~C~~C~~~f~~~ 77 (96)
T 2dmd_A 36 PYKCKTCDYAAADSSSLNKHLR-I-HSD-------ERPFKCQICPYASRNS 77 (96)
T ss_dssp SEECSSSCCEESSHHHHHHHHH-H-SCC-------CCCEECSSSSCEESSH
T ss_pred CEeCCCCCCccCCHHHHHHHHH-H-hCC-------CCCccCCCCCCccCCH
Confidence 4789999999999999999986 3 432 1248999999865333
No 121
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=52.17 E-value=4.7 Score=33.55 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=31.1
Q ss_pred ecCcccccccc---hHHHHHHHhhhccCCCCcchhhhhhcccCCCCC
Q 015122 7 KCGDCGALLRS---VQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 7 ~C~~C~~~~~~---~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
-|..||.++=| +.-|..|.++|||..+-.... ....|=.|+.
T Consensus 38 ~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~--~~vwCy~cd~ 82 (109)
T 3c5k_A 38 VCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYID--LSAWCYYCQA 82 (109)
T ss_dssp EETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTT--CCEEETTTTE
T ss_pred eeeecCccccCCCcChHHHHHhcccCCCEEEECCC--CCEEECCCCC
Confidence 38889999844 566999999999998866521 1367777764
No 122
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=51.98 E-value=1.1e+02 Score=29.45 Aligned_cols=41 Identities=20% Similarity=0.558 Sum_probs=34.1
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 015122 112 EVDKELLKELEAMGFPVARATRALHYSGNAN----VEAAVNWVVE 152 (413)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~----~E~A~~Wl~~ 152 (413)
-+.+++...|..+|||-...+.+|.+.|... +=.|+.||.+
T Consensus 68 k~eeev~~~lK~L~YP~~isKS~L~a~g~pHsWp~~Lg~L~WLve 112 (315)
T 2ve7_A 68 KFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLID 112 (315)
T ss_dssp CHHHHHHHHHHHTTCSSCCCHHHHHTTTSTTTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCceeCHHHhcCCCCCCcHHHHHHHHHHHHH
Confidence 4667899999999999998888898888743 7789999964
No 123
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=51.44 E-value=6.8 Score=30.86 Aligned_cols=45 Identities=24% Similarity=0.504 Sum_probs=32.4
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCCCCc
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~~~~ 55 (413)
..+|..|+..+.....-+.|.. +-|..-++ ..|.|+.|++.+.+.
T Consensus 35 ~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~-----~~~~C~~C~~~f~~~ 79 (124)
T 2dlq_A 35 PFECPKCGKCYFRKENLLEHEA-RNCMNRSE-----QVFTCSVCQETFRRR 79 (124)
T ss_dssp SCBCTTTCCBCSSHHHHHHHHH-HCCCCSCC-----CCEECSSSCCEESSH
T ss_pred CeECCCCCchhcCHHHHHHHHh-hhhcCCCC-----CCeECCCCCCccCCH
Confidence 4689999999999999999987 32222222 248999999865433
No 124
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=47.46 E-value=9.5 Score=29.64 Aligned_cols=39 Identities=23% Similarity=0.554 Sum_probs=30.5
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
..+|..|+..+.....-+.|.. .|.. ...|.|+.|++.+
T Consensus 37 ~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f 75 (110)
T 2csh_A 37 PYGCGVCGKKFKMKHHLVGHMK--IHTG-------IKPYECNICAKRF 75 (110)
T ss_dssp SEECTTTSCEESSSHHHHHHHT--TTCC-------CCCEECSSSCCEE
T ss_pred CccCCCCCcccCCHHHHHHHHH--HcCC-------CCCeeCCCCcchh
Confidence 4789999999999999999975 3432 1248999999864
No 125
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=46.71 E-value=13 Score=28.51 Aligned_cols=12 Identities=25% Similarity=0.816 Sum_probs=6.8
Q ss_pred ceeecCcccccc
Q 015122 4 VSLKCGDCGALL 15 (413)
Q Consensus 4 ~~l~C~~C~~~~ 15 (413)
+.-.|.+||..+
T Consensus 27 v~Y~C~~CG~~~ 38 (70)
T 1twf_L 27 LKYICAECSSKL 38 (70)
T ss_dssp CCEECSSSCCEE
T ss_pred EEEECCCCCCcc
Confidence 445566666553
No 126
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=45.77 E-value=1.7e+02 Score=26.49 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh
Q 015122 176 SSLTPEEIKLKAQELRERARKK 197 (413)
Q Consensus 176 ~~lT~eEk~~k~~el~~k~r~~ 197 (413)
..||++|-..+++.|...++.+
T Consensus 6 ~al~~~~v~~~i~~m~~fI~qE 27 (233)
T 4efa_E 6 TALTPNQVNDELNKMQAFIRKE 27 (233)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHH
Confidence 4799999999999888776443
No 127
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.18 E-value=22 Score=22.81 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=25.1
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2eop_A 11 KPHECRECGKSFSFNSQLIVHQR--IHTG--E-----NPSGPSSG 46 (46)
T ss_dssp CSCBCTTTCCBCSSHHHHHHHHT--TTTT--S-----CCSCCCCC
T ss_pred CCeeCCCCCchhCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34679999999988888888865 2542 1 23778776
No 128
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=44.42 E-value=26 Score=22.46 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=26.1
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~c 46 (46)
T 2ema_A 11 KRYKCNECGKVFSRNSQLSQHQK--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHT--GGGC--C-----CCCSSSCC
T ss_pred cCcCCCCCcchhCCHHHHHHHHH--hcCC--C-----CCCCCCCC
Confidence 35689999999998888888865 3542 1 23788876
No 129
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.38 E-value=25 Score=22.52 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=26.4
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. + |.. + .-|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~-~-H~~--~-----k~~~C~~C 46 (46)
T 2emy_A 11 NPYECHECGKAFSRKYQLISHQR-T-HAG--E-----KPSGPSSG 46 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHH-H-HTT--S-----CCSCSSCC
T ss_pred cCcCCCCCCcccCcHHHHHHHHH-H-cCC--C-----CCCCCCCC
Confidence 45789999999998888888865 2 542 1 23788877
No 130
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=44.34 E-value=24 Score=22.62 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=24.1
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
..+|..||..+.....-+.|.. .|..- ..|.|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~--~H~~~-------~~~~C~~C 46 (46)
T 2em0_A 12 TWKCRECDMCFSQASSLRLHQN--VHVGE-------KPSGPSSG 46 (46)
T ss_dssp CCCCSSSCCCCSSHHHHHHHGG--GGSSS-------SCSCSSCC
T ss_pred CeECCCCCcccCCHHHHHHHHH--HcCCC-------CCcCCCCC
Confidence 4578888888888888888865 25421 23777776
No 131
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=43.69 E-value=6.4 Score=32.97 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=12.7
Q ss_pred eecCcccccccchHHHHHHHh
Q 015122 6 LKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~ 26 (413)
-+|..||..+.....=+.|..
T Consensus 23 y~C~~C~k~F~~~~~L~~H~~ 43 (133)
T 2lt7_A 23 YICIVCKRSYVCLTSLRRHFN 43 (133)
T ss_dssp EEETTTCCEESCHHHHHHHHH
T ss_pred eECCCCCCCcCCHHHHHHHHH
Confidence 356666666666666666643
No 132
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=42.79 E-value=12 Score=29.60 Aligned_cols=43 Identities=26% Similarity=0.565 Sum_probs=30.0
Q ss_pred CCceeecC--cccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCCCC
Q 015122 2 AGVSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS 54 (413)
Q Consensus 2 ~~~~l~C~--~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~~~ 54 (413)
..-..+|. .||..+.....-+.|.. .| ++ ..|.|+.||+.+.+
T Consensus 2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~--~h---~~-----~~~~C~~C~~~f~~ 46 (124)
T 1ubd_C 2 EPRTIACPHKGCTKMFRDNSAMRKHLH--TH---GP-----RVHVCAECGKAFVE 46 (124)
T ss_dssp ---CEECCSTTCCCEESSHHHHHHHHG--GG---SC-----CCEECTTTCCEESS
T ss_pred CCCcccCCCCCCcCccCCHHHHHHHHH--Hc---CC-----CCeECCCCCchhCC
Confidence 34467898 89999999999899976 24 22 24889999886433
No 133
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.52 E-value=28 Score=22.26 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=25.9
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2epw_A 11 KPCKCTECGKAFCWKSQLIMHQR--THVD--D-----KHSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSSHHHHHHHH--HCCS--C-----CCSCCCCC
T ss_pred CCeeCCCCCCccCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999988888888875 2542 1 23788776
No 134
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=41.68 E-value=11 Score=26.88 Aligned_cols=40 Identities=18% Similarity=0.405 Sum_probs=29.9
Q ss_pred ceeecC--cccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 4 VSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 4 ~~l~C~--~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
-..+|. .||..+.....-+.|.. .|.. ...|.|+.||+.+
T Consensus 18 ~~~~C~~~~C~k~f~~~~~l~~H~~--~h~~-------~~~~~C~~C~~~f 59 (73)
T 1f2i_G 18 RPYACPVESCDRRFSRSDELTRHIR--IHTG-------QKPFQCRICMRNF 59 (73)
T ss_dssp CCEECSSTTBCCEESSHHHHHHHHH--HHHC-------CCCEECTTTCCEE
T ss_pred CccCCcCCCCCCccCCHHHHHHHHH--hhCC-------CCCeECCCCCchh
Confidence 347897 69999999999999965 2431 1238999999864
No 135
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=47.70 E-value=5.5 Score=22.36 Aligned_cols=10 Identities=50% Similarity=1.142 Sum_probs=7.4
Q ss_pred cccCCCCCCC
Q 015122 43 LVCATCGKPC 52 (413)
Q Consensus 43 ~~C~~C~~~~ 52 (413)
|.|+.||+.+
T Consensus 3 ~~C~~C~k~f 12 (26)
T 2lvu_A 3 YVCERCGKRF 12 (26)
Confidence 6788888754
No 136
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=41.55 E-value=69 Score=23.03 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=35.0
Q ss_pred cccCHHHHHHHH--hCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 015122 111 PEVDKELLKELE--AMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (413)
Q Consensus 111 ~~~~~~~l~~L~--~MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (413)
..+.++++++.. =-|-|++...+-|..|+= ++..|+|-|++..|+
T Consensus 6 ~~vPe~li~q~q~VLqgksR~vIirELqrTnL-dVN~AvNNlLsRDd~ 52 (53)
T 2qho_B 6 SVIPEELISQAQVVLQGKSRSVIIRELQRTNL-DVNLAVNNLLSRDDE 52 (53)
T ss_dssp GGSCHHHHHHHHHHSTTCCHHHHHHHHHHTTT-CHHHHHHHHHC----
T ss_pred ccCcHHHHHHHHHHhcCCcHHHHHHHHHHhCc-cHHHHHHHHhccccC
Confidence 456778887665 479999999999999875 999999999986543
No 137
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=41.26 E-value=8.5 Score=30.10 Aligned_cols=21 Identities=19% Similarity=0.569 Sum_probs=12.2
Q ss_pred eecC--cccccccchHHHHHHHh
Q 015122 6 LKCG--DCGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~--~C~~~~~~~~~aq~h~~ 26 (413)
.+|. .||..+.....-+.|..
T Consensus 37 ~~C~~~~C~~~f~~~~~l~~H~~ 59 (119)
T 2jp9_A 37 YQCDFKDCERRFSRSDQLKRHQR 59 (119)
T ss_dssp EECCSTTCCCEESSHHHHHHHHH
T ss_pred ccCCCCCCcCccCCHHHHHHHHH
Confidence 4565 56666666555555544
No 138
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=40.09 E-value=29 Score=22.28 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=26.0
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2el6_A 11 NPYKCSQCEKSFSGKLRLLVHQR--MHTR--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSSCEESSHHHHHHHHG--GGCC--S-----SCCSCCCC
T ss_pred CCeECCCCCcccCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34689999999988888888854 3653 1 23788776
No 139
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=39.80 E-value=7.7 Score=21.80 Aligned_cols=10 Identities=30% Similarity=0.710 Sum_probs=7.7
Q ss_pred cccCCCCCCC
Q 015122 43 LVCATCGKPC 52 (413)
Q Consensus 43 ~~C~~C~~~~ 52 (413)
|.|+.||+.+
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 6788888764
No 140
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=39.55 E-value=19 Score=32.04 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=29.6
Q ss_pred HHHHHHHhCC-CCHHHHHHHHHHhCCCCHHHHHHHHH
Q 015122 116 ELLKELEAMG-FPVARATRALHYSGNANVEAAVNWVV 151 (413)
Q Consensus 116 ~~l~~L~~MG-F~~~~a~kAL~~tgn~~~E~A~~Wl~ 151 (413)
.-+..|++.| |+...|..||..+|+ +++.|+-=|-
T Consensus 104 ~K~~eL~s~G~~~~~~~~~aL~~~~G-dv~~Al~eLq 139 (162)
T 4dbg_B 104 RKVQELQSLGFGPEEGSLQALFQHGG-DVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHHTTT-CHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHcCC-cHHHHHHHHH
Confidence 3478899999 677999999999998 9999998653
No 141
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=39.50 E-value=6 Score=33.37 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=41.5
Q ss_pred eeecCcccccccchHHHHHHHhhhccCC-------------------CC-----cchhhhhhcccCCCCCCCCCcccccc
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSN-------------------FS-----ESTEAVLNLVCATCGKPCRSKTETDL 60 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~-------------------F~-----e~~e~~~~~~C~~C~~~~~~~~e~~~ 60 (413)
.+.|..|+..+.+...++.|-.-.-|.. |. ........|.|.-|...|.|......
T Consensus 32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~~ 111 (127)
T 1zu1_A 32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAES 111 (127)
T ss_dssp SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHHH
T ss_pred CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHHH
Confidence 3689999999999999888874322311 00 01122346899999988877776666
Q ss_pred ccccccc
Q 015122 61 HRKRTGH 67 (413)
Q Consensus 61 ~~K~t~~ 67 (413)
|+..-.|
T Consensus 112 H~~gk~H 118 (127)
T 1zu1_A 112 HYIGKTH 118 (127)
T ss_dssp HHTSHHH
T ss_pred HHCCHHH
Confidence 6655444
No 142
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.28 E-value=32 Score=21.95 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=24.1
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
..+|..||..+.....-+.|.. +.|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~-~~H~~--~-----k~~~C~~C 47 (47)
T 2epx_A 12 PYECIECGKAFIQNTSLIRHWR-YYHTG--E-----KPSGPSSG 47 (47)
T ss_dssp SBCCSSSCCCBSSHHHHHHHHT-TTTTT--S-----CSSSCCCC
T ss_pred CEECCccCchhCChHHHHHHhH-hhcCC--C-----CCCCCCCC
Confidence 4578888888888888777865 24532 1 23777766
No 143
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.09 E-value=36 Score=21.82 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=26.1
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2em5_A 11 KSHQCHECGRGFTLKSHLNQHQR--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHT--TTSC--S-----CCSSCCCC
T ss_pred CCeECCcCCCccCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999998888888864 3542 1 23788877
No 144
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=45.03 E-value=6.5 Score=22.56 Aligned_cols=10 Identities=40% Similarity=0.959 Sum_probs=7.8
Q ss_pred cccCCCCCCC
Q 015122 43 LVCATCGKPC 52 (413)
Q Consensus 43 ~~C~~C~~~~ 52 (413)
|.|+.||+.+
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2lvt_A 3 CQCVMCGKAF 12 (29)
Confidence 7788888764
No 145
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.62 E-value=3.3e+02 Score=27.62 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=6.0
Q ss_pred HhhHHHHHHHHHHH
Q 015122 215 RIGKELLEAKRIEE 228 (413)
Q Consensus 215 ~~gKe~~~~k~~~e 228 (413)
..++++...++..+
T Consensus 506 ~l~~~~~~~~~~~~ 519 (597)
T 3oja_B 506 NLNKVFTHLKERQA 519 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 34444444444333
No 146
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=38.33 E-value=11 Score=38.01 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=32.5
Q ss_pred ecCcccccccc-hHHHHHHHhhhccCCCCcchhhhhhcccCCCCC
Q 015122 7 KCGDCGALLRS-VQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 7 ~C~~C~~~~~~-~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
-|..||.++-| +.-|..|...|||..+-... .....|-.|+.
T Consensus 64 ~cl~cg~~~c~~~~h~~~H~~~~~h~~~~~~~--~~~~~c~~~~~ 106 (476)
T 3mhs_A 64 MCLQCGFCGCWNHSHFLSHSKQIGHIFGINSN--NGLLFCFKCED 106 (476)
T ss_dssp EESSSSCEEETTTTHHHHHHHHHCCCEEEETT--TCCEEETTTTE
T ss_pred EeCCCCCCccCCchHHHHHhcccCCcEEEECC--CCcEEeCCCCC
Confidence 58889988865 45699999999998876552 23578999985
No 147
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=44.20 E-value=6.8 Score=22.44 Aligned_cols=11 Identities=27% Similarity=0.760 Sum_probs=8.3
Q ss_pred hcccCCCCCCC
Q 015122 42 NLVCATCGKPC 52 (413)
Q Consensus 42 ~~~C~~C~~~~ 52 (413)
-|.|+.||+.+
T Consensus 3 ~~~C~~C~k~f 13 (30)
T 2lvr_A 3 PYVCIHCQRQF 13 (30)
Confidence 37888898864
No 148
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.87 E-value=37 Score=21.46 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=26.1
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. + |.. + ..|.|+.|
T Consensus 9 k~~~C~~C~k~f~~~~~L~~H~~-~-H~~--~-----~~~~C~~C 44 (44)
T 2emx_A 9 KPFGCSCCEKAFSSKSYLLVHQQ-T-HAE--E-----KPSGPSSG 44 (44)
T ss_dssp CCEECSSSSCEESSHHHHHHHHH-H-HTS--S-----CSCSCCCC
T ss_pred cCccCCCCCcccCCHHHHHHHHH-H-hCC--C-----CCCCCCCC
Confidence 35789999999999888888865 2 542 1 23788776
No 149
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.73 E-value=33 Score=21.90 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=26.5
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. + |.. + ..|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~-~-H~~--~-----k~~~C~~C 46 (46)
T 2en6_A 11 KPYGCNECGKTFSQKSILSAHQR-T-HTG--E-----KPSGPSSG 46 (46)
T ss_dssp CCEEETTTTEEESSHHHHHHHHH-H-HSS--C-----CCSSSCCC
T ss_pred cCeECCCCCcccCchHHHHHHHH-H-cCC--C-----CCCCCCCC
Confidence 34689999999999888888876 2 542 1 23788877
No 150
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.23 E-value=35 Score=21.89 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=24.6
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2ytq_A 12 PYGCSECGKAFSSKSYLIIHMR--THSG--E-----KPSGPSSG 46 (46)
T ss_dssp SCBCSSSCCBCSCHHHHHHHHT--TTCC--S-----CSSCCCCC
T ss_pred CcCCCccChhhCChHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 4678899999988888888865 3543 1 23778776
No 151
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.16 E-value=40 Score=21.53 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=25.7
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2ene_A 11 KPYKCNECGKVFRHNSYLSRHQR--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp SSEECSSSCCEESSHHHHHHHHT--TTCC--C-----CCCSCCCC
T ss_pred CCeECCCCCchhCChHHHHHHHh--hcCC--C-----CCCCCCCC
Confidence 34689999999988888888865 3542 1 23788776
No 152
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.04 E-value=41 Score=21.42 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=26.3
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..|+..+.....-+.|.. .|..- .-|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~~-------k~~~C~~C 46 (46)
T 2ep0_A 11 KPYKCDVCHKSFRYGSSLTVHQR--IHTGE-------KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHT--TTSSS-------CCCSCCCC
T ss_pred CCeeCcccCcccCChHHHHHHHH--HhCCC-------CCCCCCCC
Confidence 34689999999999888888864 36531 23788776
No 153
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.40 E-value=38 Score=21.53 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=26.1
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. ..-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C 46 (46)
T 2emm_A 11 RPHKCNECGKSFIQSAHLIQHQR--IHTG-------EKPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HHSC-------CCTTSSSCC
T ss_pred CCeeCCCCChhhCCHHHHHHHHH--HhCC-------CCCCCCCCC
Confidence 34689999999998888888865 3542 123788877
No 154
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=36.13 E-value=36 Score=21.84 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=24.7
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2emk_A 12 PYECKECGKAFSQTTHLIQHQR--VHTG--E-----KPSGPSSG 46 (46)
T ss_dssp SCBCSSSCCBCSCHHHHHHHHH--HHSS--C-----CCSSCCCC
T ss_pred ceECCCCCchhCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 4678999999988888888865 2542 1 23778776
No 155
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=35.93 E-value=45 Score=21.17 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=25.8
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2el4_A 11 KPYGCSQCAKTFSLKSQLIVHQR--SHTG--V-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSSCEESSHHHHHHHGG--GSSS--C-----CCSCCTTC
T ss_pred CceECCCCCchhCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999988888888864 3542 1 23788876
No 156
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.91 E-value=32 Score=22.05 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=25.7
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. + |.. ...|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~-~-H~~-------~k~~~C~~C 46 (46)
T 2eoo_A 11 RPYGCNECGKNFGRHSHLIEHLK-R-HFR-------EKSSGPSSG 46 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHH-H-HHS-------TTSSCCSCC
T ss_pred CCEEccccCcccCCHHHHHHHHH-H-HcC-------CCCCCCCCC
Confidence 34689999999988888888865 2 532 123788776
No 157
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.86 E-value=45 Score=21.30 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=25.4
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----k~~~C~~c 46 (46)
T 2emf_A 11 KHFECTECGKAFTRKSTLSMHQK--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CCEECSSSCCEESCHHHHHHHGG--GTSC--S-----SCSCCCCC
T ss_pred CCeECCCCCchhCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999988888888865 3542 1 23788776
No 158
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=35.85 E-value=12 Score=32.02 Aligned_cols=44 Identities=16% Similarity=-0.006 Sum_probs=30.2
Q ss_pred ecCcccccc---c------chHHHHHHHhhhccCCCCcch---hhhhhcccCCCCC
Q 015122 7 KCGDCGALL---R------SVQEAQEHAELTSHSNFSEST---EAVLNLVCATCGK 50 (413)
Q Consensus 7 ~C~~C~~~~---~------~~~~aq~h~~~tgh~~F~e~~---e~~~~~~C~~C~~ 50 (413)
-|..||.|+ . ++.-|..|...|||..+-... -..-+..|=.|+.
T Consensus 48 lCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~l~v~l~t~~~~~~~vwcY~cd~ 103 (129)
T 2g45_A 48 LNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDD 103 (129)
T ss_dssp EETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTTTE
T ss_pred EeccCCccccCccccCCCCcCcHHHHHhhhcCCCEEEECCCCCCCCCeEEECCCCC
Confidence 477788875 1 367799999999998776431 1114568878864
No 159
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.46 E-value=39 Score=21.58 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=26.2
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2ysp_A 11 KPYKCEKCGKGYNSKFNLDMHQK--VHTG--E-----RPSGPSSG 46 (46)
T ss_dssp CSEEETTTTEEESCHHHHHHHHT--TSCS--C-----CSSCCSCC
T ss_pred CCeECCCCCCccCCHHHHHHHHH--hhCC--C-----CCCCCCCC
Confidence 34689999999998888888865 3542 1 23788877
No 160
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.24 E-value=41 Score=21.39 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=25.0
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2eq4_A 12 LYNCKECGKSFSRAPCLLKHER--LHSG--E-----KPSGPSSG 46 (46)
T ss_dssp CCCBTTTTBCCSCHHHHHHHHH--HCCS--S-----SCCCCCCC
T ss_pred CeECCCCCCccCchHHHHHHHH--hcCC--C-----CCCCCCCC
Confidence 4679999999988888888865 2542 1 23788776
No 161
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.19 E-value=48 Score=21.11 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=25.9
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2eml_A 11 KPYECSVCGKAFSHRQSLSVHQR--IHSG--K-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHG--GGSS--C-----CCSCSSCC
T ss_pred CCeeCCCcCCccCCHHHHHHHHH--HhcC--C-----CCCCCCCC
Confidence 34689999999988888888865 3543 1 23788776
No 162
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=34.65 E-value=48 Score=21.03 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=25.6
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2em9_A 11 KPYNCKECGKSFRWASCLLKHQR--VHSG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHGG--GGTS--C-----CCCSTTCC
T ss_pred cCeECCccccccCChHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999988888888864 3542 1 23788776
No 163
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=34.64 E-value=14 Score=29.86 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=31.7
Q ss_pred eecCc--ccccccc---hHHHHHHHhhhccCCCCcchhhhhhcccCCCCC
Q 015122 6 LKCGD--CGALLRS---VQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 6 l~C~~--C~~~~~~---~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
--|.. ||.++=| ..-|..|.++|||..+-... ..+..|=.|+.
T Consensus 39 w~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~--~~~vwCy~cdd 86 (97)
T 2uzg_A 39 WACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLT--TLRVWCYACSK 86 (97)
T ss_dssp EEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETT--TTEEEETTTTE
T ss_pred eeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECC--CCCEEECCCCc
Confidence 36888 8888743 45699999999999887752 22578888864
No 164
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.56 E-value=46 Score=21.18 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=25.7
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2em7_A 11 KPYKCEECGKGFICRRDLYTHHM--VHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESCHHHHHHHGG--GGTT--C-----CCSSTTCC
T ss_pred cCccCCCccchhCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999988888888864 3542 1 23788776
No 165
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.39 E-value=42 Score=21.39 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=24.2
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2ytn_A 12 PYKCNECGKVFTQNSHLARHRG--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp SCBCTTTCCBCSSHHHHHHHGG--GTSC--C-----CCCSCCCC
T ss_pred CeECCCCCCeeCCHHHHHHHhh--hcCC--C-----CCCCCCCC
Confidence 4678889988888888888854 3542 1 23778776
No 166
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.16 E-value=34 Score=24.48 Aligned_cols=49 Identities=24% Similarity=0.501 Sum_probs=28.4
Q ss_pred eecCc--ccccccchHHHHHHHhhhccCCCCcchhhhhhcccCC--CCCCCCCcccccccc
Q 015122 6 LKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT--CGKPCRSKTETDLHR 62 (413)
Q Consensus 6 l~C~~--C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~--C~~~~~~~~e~~~~~ 62 (413)
..|.. |+..+.....-+.|.. +.|.. ...|.|+. ||+.+.+......|.
T Consensus 8 ~~C~~~~C~~~f~~~~~L~~H~~-~~H~~-------~~~~~C~~~~C~k~f~~~~~L~~H~ 60 (79)
T 2dlk_A 8 MPCDFPGCGRIFSNRQYLNHHKK-YQHIH-------QKSFSCPEPACGKSFNFKKHLKEHM 60 (79)
T ss_dssp EECSSTTTCCEESSHHHHHHHHH-HGGGS-------CCCEECSCTTTCCEESSHHHHHHHH
T ss_pred ccCCCCCCcCccCCHHHHHHHHH-HHhCC-------CCCeECCCCCCcCccCCHHHHHHHH
Confidence 45554 8888877777777765 33432 12266666 766665544444443
No 167
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=34.15 E-value=11 Score=26.34 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=20.0
Q ss_pred CCCceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCC
Q 015122 1 MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 1 ~~~~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
|....+.|..||.. ...|... .-++.|+.||.
T Consensus 1 m~~~~~~CP~C~~~---------------~l~~d~~---~gelvC~~CG~ 32 (50)
T 1pft_A 1 MVNKQKVCPACESA---------------ELIYDPE---RGEIVCAKCGY 32 (50)
T ss_dssp CCSSCCSCTTTSCC---------------CEEEETT---TTEEEESSSCC
T ss_pred CCCccEeCcCCCCc---------------ceEEcCC---CCeEECcccCC
Confidence 55667889999861 1112222 23589999996
No 168
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.13 E-value=48 Score=21.11 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=25.9
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----k~~~C~~c 46 (46)
T 2eq0_A 11 KPYKCHECGKVFRRNSHLARHQL--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CCEECTTTCCEESSHHHHHHHHT--TTCC--C-----CCSCCSCC
T ss_pred CCeECCCCCchhCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34689999999988888888864 3642 1 23788776
No 169
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.98 E-value=49 Score=20.99 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=26.0
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2en8_A 11 KSHTCDECGKNFCYISALRIHQR--VHMG--E-----KCSGPSSG 46 (46)
T ss_dssp SSEECTTTCCEESSHHHHHHHHT--TTCC--S-----CSSCCSCC
T ss_pred CCeECCCcCcccCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999988888888864 3542 1 23788877
No 170
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=33.74 E-value=23 Score=19.82 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=17.4
Q ss_pred eecCcccccccchHHHHHHHh
Q 015122 6 LKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~ 26 (413)
.+|..||..+.....-+.|..
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~ 24 (28)
T 2kvf_A 4 YSCSVCGKRFSLKHQMETHYR 24 (28)
T ss_dssp EECSSSCCEESCHHHHHHHHT
T ss_pred ccCCCCCcccCCHHHHHHHHH
Confidence 579999999988888888864
No 171
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.08 E-value=38 Score=21.67 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=25.6
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. ...|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2em8_A 11 KPYKCVECGKGYKRRLDLDFHQR--VHTG-------EKLSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HHHC-------CCCCCSCCC
T ss_pred CCeECcccCchhCCHHHHHHHHH--HHcC-------CCCCCCCCC
Confidence 34689999999988888888865 2532 123788776
No 172
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.05 E-value=45 Score=21.25 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=24.0
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2eoq_A 12 PFKCDICGKSFCGRSRLNRHSM--VHTA--E-----KPSGPSSG 46 (46)
T ss_dssp SCCCSSSCCCCSSHHHHHHHHH--HTTC--C-----CSSSCCCC
T ss_pred CcCCCcCCchhCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 4578888888888888888855 2532 1 23677766
No 173
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.01 E-value=53 Score=20.87 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=25.6
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~c 46 (46)
T 2ytj_A 11 KPYICAECGKAFTIRSNLIKHQK--IHTK--Q-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HTSC--C-----CCSSCSCC
T ss_pred cCeECCCCChhhCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34689999999988888888865 3542 1 23778766
No 174
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=33.01 E-value=36 Score=21.81 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=22.4
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
..+|..||..+.....-+.|.. + |.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~-~-H~~--~-----k~~~C~~C 46 (46)
T 2ely_A 12 PFKCVECGKGFSRRSALNVHHK-L-HTG--E-----KPSGPSSG 46 (46)
T ss_dssp SBCCSSSCCCBSSTTHHHHHHH-H-HSC--C-----SSCSCCCC
T ss_pred CcccCccCcccCCHHHHHHHHH-H-cCC--C-----CCCCCCCC
Confidence 3578888888877777777765 2 542 1 23677666
No 175
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=32.72 E-value=25 Score=19.37 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=16.1
Q ss_pred eecCcccccccchHHHHHHHh
Q 015122 6 LKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~ 26 (413)
.+|..||..+.....-+.|..
T Consensus 2 ~~C~~C~k~f~~~~~l~~H~~ 22 (27)
T 1znf_A 2 YKCGLCERSFVEKSALSRHQR 22 (27)
T ss_dssp CBCSSSCCBCSSHHHHHHHGG
T ss_pred ccCCCCCCcCCCHHHHHHHHH
Confidence 368889988888777777754
No 176
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=32.68 E-value=25 Score=25.78 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=11.7
Q ss_pred eecCc--ccccccchHHHHHHHh
Q 015122 6 LKCGD--CGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~--C~~~~~~~~~aq~h~~ 26 (413)
..|.. ||..+.....-+.|..
T Consensus 6 ~~C~~~~C~~~f~~~~~l~~H~~ 28 (89)
T 2wbs_A 6 HTCDYAGCGKTYTKSSHLKAHLR 28 (89)
T ss_dssp EECCSTTTCCEESSHHHHHHHHT
T ss_pred eeCCCCCCCCcCCCHHHHHHHHH
Confidence 45555 6666655555555554
No 177
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=32.63 E-value=21 Score=27.88 Aligned_cols=29 Identities=28% Similarity=0.716 Sum_probs=19.6
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
..+.|++|+... ...|. ++..+|+.||+-
T Consensus 36 v~I~CnDC~~~s--------------~v~~h-----~lg~kC~~C~Sy 64 (79)
T 2k2d_A 36 VDILCNDCNGRS--------------TVQFH-----ILGMKCKICESY 64 (79)
T ss_dssp EEEEESSSCCEE--------------EEECC-----TTCCCCTTTSCC
T ss_pred eEEECCCCCCCc--------------cCCce-----eecccCcCCCCc
Confidence 358999999753 34442 334599999973
No 178
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=32.24 E-value=28 Score=29.73 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHhCC--CCHHHHHHHHHHhcCCC
Q 015122 124 MGFPVARATRALHYSGN--ANVEAAVNWVVEHENDP 157 (413)
Q Consensus 124 MGF~~~~a~kAL~~tgn--~~~E~A~~Wl~~h~dd~ 157 (413)
|+|+++.-..-|..-.+ .+++.+..|++.|....
T Consensus 1 m~fs~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~a 36 (142)
T 2km4_A 1 MAFSSEQFTTKLNTLEDSQESISSASKWLLLQYRDA 36 (142)
T ss_dssp -CCCHHHHHHHHHTCCSCHHHHHHHHHHHHTCGGGH
T ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHHHhhhhH
Confidence 89999999887766544 37899999999987653
No 179
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.05 E-value=43 Score=21.32 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=26.0
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2ytd_A 11 KPYKCSECGKAFHRHTHLNEHRR--IHTG--Y-----RPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HHTC--C-----CSSCSSCC
T ss_pred cCeECCCCCCeeCChHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34689999999988888888864 3542 1 23788877
No 180
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.04 E-value=59 Score=20.58 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=25.9
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2eme_A 11 KPYVCDYCGKAFGLSAELVRHQR--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHG--GGCC--C-----SCCSSCCC
T ss_pred CCeECCCCChhhCCHHHHHHHHH--hcCC--C-----CCCCCCCC
Confidence 34689999999988888888864 3532 1 23788877
No 181
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=32.02 E-value=13 Score=31.87 Aligned_cols=20 Identities=25% Similarity=0.687 Sum_probs=9.6
Q ss_pred eecCcccccccchHHHHHHH
Q 015122 6 LKCGDCGALLRSVQEAQEHA 25 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~ 25 (413)
.+|..||..+.....-+.|.
T Consensus 50 ~~C~~C~~~f~~~~~l~~H~ 69 (190)
T 2i13_A 50 YKCPECGKSFSDKKDLTRHQ 69 (190)
T ss_dssp EECTTTCCEESSHHHHHHHH
T ss_pred ccCCCcCchhCCHHHHHHHH
Confidence 34555555554444444444
No 182
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.98 E-value=40 Score=21.45 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=24.4
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
..+|..||..+.....-+.|.. .|.. ...|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2eov_A 12 PYKCSDCGKSFTWKSRLRIHQK--CHTG-------ERHSGPSSG 46 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHHH--HHSC-------CSSCCSCCC
T ss_pred CccCCccChhhCCHHHHHHHHH--hcCC-------CCCCCCCCC
Confidence 4678899999888888888864 3542 123778776
No 183
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.90 E-value=49 Score=21.05 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=25.2
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2yso_A 12 SHQCRECGEIFFQYVSLIEHQV--LHMG--Q-----KNSGPSSG 46 (46)
T ss_dssp CEECTTTCCEESSHHHHHHHHH--HHSC--C-----SCCCTTCC
T ss_pred CEEccccChhhCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 4689999999988888888865 2532 1 23788777
No 184
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=31.77 E-value=27 Score=27.20 Aligned_cols=38 Identities=32% Similarity=0.483 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015122 228 EENERKRILALRKAEKEE-EKRAREKIRQKLEEDKAERRRRLGLPP 272 (413)
Q Consensus 228 ee~e~k~~~e~rkrEK~e-~~~ar~ri~~qIe~Dk~eR~~k~~~~~ 272 (413)
+..+..+.++.+|++|-. ....|+++|+.| +.|+|+..
T Consensus 20 E~~eAlrqaEE~Rk~Kh~kmE~ERE~mRq~I-------RdKY~ikK 58 (79)
T 1l4a_E 20 AIEEARREAEERRKEKHRKMEEEREEMRQTI-------RDKYGLKK 58 (79)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHH-------HHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcccc
Confidence 334455556666666633 345678888888 33466544
No 185
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=31.75 E-value=15 Score=26.94 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCC---HHHHHHHHHHhCCCCHHHHHHHHHH
Q 015122 115 KELLKELEAMGFP---VARATRALHYSGNANVEAAVNWVVE 152 (413)
Q Consensus 115 ~~~l~~L~~MGF~---~~~a~kAL~~tgn~~~E~A~~Wl~~ 152 (413)
.+.+.+|.+| || .+..+-.|...++ +++.|+|-|++
T Consensus 13 ~~~~~~L~~M-FP~lD~evI~~Vl~a~~G-~~~~~IdaLLq 51 (54)
T 1p3q_Q 13 KDTLNTLQNM-FPDMDPSLIEDVCIAAAS-RIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHH-STTSCHHHHHHHHHHSCC---CGGGC----
T ss_pred HHHHHHHHHH-cccCCHHHHHHHHHHcCC-CHHHHHHHHHh
Confidence 4678999999 55 5667777766655 78888888765
No 186
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.58 E-value=48 Score=21.01 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=26.3
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 11 ~~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2eoe_A 11 KPYKCNECGKVFTQNSHLANHQR--IHTG--V-----KPSGPSSG 46 (46)
T ss_dssp CSSEETTTTEECSSHHHHHHHHG--GGSC--C-----CSCSSCCC
T ss_pred CCeECCCcChhhCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34689999999999888888864 3542 1 23788877
No 187
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=31.41 E-value=28 Score=28.89 Aligned_cols=8 Identities=25% Similarity=0.762 Sum_probs=5.8
Q ss_pred cccCCCCC
Q 015122 43 LVCATCGK 50 (413)
Q Consensus 43 ~~C~~C~~ 50 (413)
-+||.|++
T Consensus 85 srCP~CkS 92 (105)
T 2gmg_A 85 SRCPKCKS 92 (105)
T ss_dssp SSCSSSCC
T ss_pred CCCcCCCC
Confidence 47888875
No 188
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.39 E-value=39 Score=21.55 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=25.1
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----k~~~C~~c 46 (46)
T 2emh_A 11 RPYICTVCGKAFTDRSNLIKHQK--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECTTTCCEESSHHHHHHHHH--HHHC--S-----SCSSSCCC
T ss_pred CCcCCCCCCchhCCHHHHHHHHH--hcCC--C-----CCCCCCCC
Confidence 34689999999988888888865 2431 1 23778776
No 189
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.96 E-value=27 Score=19.40 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=17.3
Q ss_pred eeecCcccccccchHHHHHHHh
Q 015122 5 SLKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~ 26 (413)
..+|..||..+.....-..|..
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~ 24 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSAMTKHLR 24 (27)
T ss_dssp CEECSSSSCEESSHHHHHHHHH
T ss_pred CccCCCcChhhCCHHHHHHHHH
Confidence 3579999999988877777754
No 190
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=30.91 E-value=1.2e+02 Score=23.27 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=28.8
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 015122 116 ELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVEHE 154 (413)
Q Consensus 116 ~~l~~L~~M--GF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~ 154 (413)
..++++.++ -+..-.+.+.|.+.++ |+|.+++.|++..
T Consensus 15 s~I~qV~DLfPdLG~gfi~~~L~~y~~-nvE~vin~LLE~~ 54 (71)
T 2di0_A 15 SLISQVKDLLPDLGEGFILACLEYYHY-DPEQVINNILEER 54 (71)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHTTT-CHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHhCC-CHHHHHHHHHccC
Confidence 445666665 3456788888988877 8999999999853
No 191
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.84 E-value=54 Score=20.84 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=26.3
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2enc_A 11 KPFKCEECGKGFYTNSQCYSHQR--SHSG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HSCC--S-----SCCSSCCC
T ss_pred CCcCCCCCCCcCCChHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999999888888865 3642 1 23788877
No 192
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=30.71 E-value=27 Score=19.46 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=17.3
Q ss_pred eecCcccccccchHHHHHHHh
Q 015122 6 LKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~ 26 (413)
.+|..||..+.....-..|..
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~ 23 (29)
T 1ard_A 3 FVCEVCTRAFARQEHLKRHYR 23 (29)
T ss_dssp CBCTTTCCBCSSHHHHHHHHH
T ss_pred eECCCCCcccCCHHHHHHHHH
Confidence 479999999988888888865
No 193
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=30.55 E-value=31 Score=19.41 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=15.8
Q ss_pred eecCcccccccchHHHHHHH
Q 015122 6 LKCGDCGALLRSVQEAQEHA 25 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~ 25 (413)
.+|..||..+.....-..|.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~ 22 (30)
T 1paa_A 3 YACGLCNRAFTRRDLLIRHA 22 (30)
T ss_dssp SBCTTTCCBCSSSHHHHHHH
T ss_pred cCCcccCcccCChHHHHHHH
Confidence 47889999888777777774
No 194
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=30.48 E-value=18 Score=30.94 Aligned_cols=21 Identities=19% Similarity=0.608 Sum_probs=12.6
Q ss_pred eecCcccccccchHHHHHHHh
Q 015122 6 LKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~ 26 (413)
.+|..||..+.....-+.|..
T Consensus 106 ~~C~~C~~~f~~~~~l~~H~~ 126 (190)
T 2i13_A 106 YACPECGKSFSQLAHLRAHQR 126 (190)
T ss_dssp EECTTTCCEESSHHHHHHHHH
T ss_pred CcCCCCCCccCCHHHHHHHHH
Confidence 456666666666655555554
No 195
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=30.18 E-value=33 Score=25.67 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=11.8
Q ss_pred eecCc--ccccccchHHHHHHHh
Q 015122 6 LKCGD--CGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~--C~~~~~~~~~aq~h~~ 26 (413)
..|.. |+..+.....-+.|..
T Consensus 16 ~~C~~~~C~~~f~~~~~l~~H~~ 38 (100)
T 2ebt_A 16 HYCDYPGCTKVYTKSSHLKAHLR 38 (100)
T ss_dssp EECCSSSCCCEESCHHHHHHHHH
T ss_pred eEcCCCCCCCcccCHHHHHHHHH
Confidence 44553 6666665555555554
No 196
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.10 E-value=64 Score=20.43 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=26.0
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~c 46 (46)
T 2ep2_A 11 KPYECSICGKSFTKKSQLHVHQQ--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--TTSS--C-----CSCCSCCC
T ss_pred cCcCCCCCCcccCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 34689999999998888888865 3542 1 23788776
No 197
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.65 E-value=57 Score=20.79 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=23.3
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2elz_A 12 PYKCEDCGKGYNRRLNLDMHQR--VHMG--E-----KTSGPSSG 46 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHGG--GGGS--C-----CCCCSCCC
T ss_pred CeeCcccCchhCCHHHHHHHHH--hcCC--C-----CCCCCCCC
Confidence 4578888888888777777754 3532 1 23777766
No 198
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=29.45 E-value=5.2e+02 Score=27.13 Aligned_cols=10 Identities=30% Similarity=0.481 Sum_probs=5.0
Q ss_pred CCCCHHHHHH
Q 015122 176 SSLTPEEIKL 185 (413)
Q Consensus 176 ~~lT~eEk~~ 185 (413)
..||+-||.-
T Consensus 480 ~~l~~~~k~~ 489 (592)
T 1f5n_A 480 QTLTEKEKEI 489 (592)
T ss_dssp SSSCHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3555555443
No 199
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.42 E-value=47 Score=21.14 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=25.3
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2emp_A 11 KPYMCNECGKAFSVYSSLTTHQV--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESCHHHHHHHHH--HHHC--C-----SCCSCCCC
T ss_pred cCeECCCCCchhCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34689999999988888888865 2532 1 23778776
No 200
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.35 E-value=37 Score=21.80 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=24.1
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
..+|..||..+.....-+.|.. + |.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~-~-H~~--~-----~~~~C~~C 46 (46)
T 2ytm_A 12 PYKCMECGKAFGDNSSCTQHQR-L-HTG--Q-----RPSGPSSG 46 (46)
T ss_dssp SSSBTTTTBCCSSHHHHHHHHH-H-HHS--C-----CCCCCCCC
T ss_pred CcCCCCCCchhCCHHHHHHHHH-H-cCC--C-----CCCCCCCC
Confidence 4578889998888888888865 2 432 1 23777766
No 201
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.18 E-value=58 Score=20.68 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=26.0
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2en1_A 11 KPFKCEECGKRFTQNSQLHSHQR--VHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEEETTTTEEESSHHHHHHHGG--GGSC--C-----CCSCCCCC
T ss_pred CCeeCCCCCcccCCHHHHHHHHH--HcCC--C-----CCCCCCCC
Confidence 34689999999998888888864 3542 1 23788776
No 202
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.15 E-value=26 Score=19.66 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.1
Q ss_pred eecCcccccccchHHHHHHHh
Q 015122 6 LKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~ 26 (413)
.+|..||..+.....-+.|..
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~ 24 (27)
T 2kvg_A 4 YRCPLCRAGCPSLASMQAHMR 24 (27)
T ss_dssp EEETTTTEEESCHHHHHHHHT
T ss_pred cCCCCCCcccCCHHHHHHHHH
Confidence 579999999988877777753
No 203
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=29.08 E-value=9.1 Score=22.96 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=8.2
Q ss_pred cccCCCCCCC
Q 015122 43 LVCATCGKPC 52 (413)
Q Consensus 43 ~~C~~C~~~~ 52 (413)
|.|+.||+.+
T Consensus 3 ~~C~~C~k~f 12 (32)
T 2kfq_A 3 FACPACPKRF 12 (32)
T ss_dssp SSSSSSCTTH
T ss_pred CCCCCCCccc
Confidence 7899999864
No 204
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.95 E-value=5.5 Score=28.24 Aligned_cols=42 Identities=21% Similarity=0.444 Sum_probs=23.5
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCCCCccccccc
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLH 61 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~~~~~e~~~~ 61 (413)
-..+|..||..+..... +.. ...|.|+.||+.+.+......|
T Consensus 17 ~~~~C~~C~k~f~~~~~------------l~~----~~~~~C~~C~~~f~~~~~l~~H 58 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRST------------LSR----RKTPMCEKCRKDSCQEAALNKD 58 (73)
T ss_dssp SEEECSSSCCEEECCCC------------CCC----SSSCCCHHHHHTCSCCCSSCCC
T ss_pred CCeeCCcccchhCCHHH------------hCc----CCCCCCCCCChhhcCHHHHHHH
Confidence 34678888888743221 111 2348899998765444333333
No 205
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=28.50 E-value=18 Score=26.15 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=12.2
Q ss_pred ec--CcccccccchHHHHHHHh
Q 015122 7 KC--GDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 7 ~C--~~C~~~~~~~~~aq~h~~ 26 (413)
+| ..||..+.....-+.|..
T Consensus 3 ~C~~~~C~~~f~~~~~l~~H~~ 24 (85)
T 2j7j_A 3 VCHFENCGKAFKKHNQLKVHQF 24 (85)
T ss_dssp ECCSTTCCCEESSHHHHHHHHH
T ss_pred cCCCCCCCcccCCHHHHHHHHH
Confidence 46 666666666666666643
No 206
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=28.33 E-value=31 Score=19.22 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=16.1
Q ss_pred eecCcccccccchHHHHHHHh
Q 015122 6 LKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~ 26 (413)
.+|..||..+.....-+.|..
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~ 23 (29)
T 1rik_A 3 FACPECPKRFMRSDHLTLHIL 23 (29)
T ss_dssp EECSSSSCEESCSHHHHHHHT
T ss_pred ccCCCCCchhCCHHHHHHHHH
Confidence 478888888877777777754
No 207
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=28.31 E-value=73 Score=29.30 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 115 KELLKELEAMGFPVARATRALHYS 138 (413)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~t 138 (413)
.++++.|+.+||++..|.+|+...
T Consensus 165 ~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 165 SPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 689999999999999999998654
No 208
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.12 E-value=49 Score=20.97 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=23.2
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~C 46 (46)
T 2ytr_A 12 PYKCNECGKAFSQTSKLARHQR--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp TTCCTTTCCCCSSHHHHHHHHT--TTTT--C-----SCCCSCCC
T ss_pred CcCCCCCCCccCCHHHHHHHHH--hcCC--C-----CCCCCCCC
Confidence 3578888888888877777754 3532 1 23777766
No 209
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=28.01 E-value=56 Score=29.75 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=25.4
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHh-C-CCCHHH
Q 015122 114 DKELLKELEAMGFPVARATRALHYS-G-NANVEA 145 (413)
Q Consensus 114 ~~~~l~~L~~MGF~~~~a~kAL~~t-g-n~~~E~ 145 (413)
..++++.|+.+||++..|.+|+... . +.+++.
T Consensus 160 ~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~e~ 193 (203)
T 1cuk_A 160 EQEAVARLVALGYKPQEASRMVSKIARPDASSET 193 (203)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcccCCCHHH
Confidence 3689999999999999999999875 2 235553
No 210
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.38 E-value=65 Score=20.43 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=23.5
Q ss_pred eeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
..+|..||..+.....-+.|.. .|.. + ..|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----k~~~C~~C 46 (46)
T 2epz_A 12 PFDCIDCGKAFSDHIGLNQHRR--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp SBCCTTTCCCBSSHHHHHHHHT--TTTT--C-----CCCSSCCC
T ss_pred CeECCCCCceeCCHHHHHHHHH--HhCC--C-----CCCCCCCC
Confidence 4578888888888877777764 3432 1 23777766
No 211
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=27.15 E-value=33 Score=28.46 Aligned_cols=49 Identities=20% Similarity=0.358 Sum_probs=26.7
Q ss_pred eecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCCCCccccccccc
Q 015122 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRK 63 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~~~~~e~~~~~K 63 (413)
.+|..||..+.....=+.|.. -|+. ..-|.|+.||+.|.+......|.+
T Consensus 51 ~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~~C~k~F~~~~~L~~H~~ 99 (133)
T 2lt7_A 51 YPCRYCEKVFPLAEYRTKHEI--HHTG-------ERRYQCLACGKSFINYQFMSSHIK 99 (133)
T ss_dssp EECSSSSCEESSHHHHHHHHH--HHHT-------CCCEEESSSCCEESSHHHHHHHHH
T ss_pred eeCCccCeecccccchhhhcc--ccCC-------CccccCCCCCCCcCCHHHHHHHhH
Confidence 467777777766666666643 2421 112566666665555444444443
No 212
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.97 E-value=65 Score=20.40 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=26.0
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. + .-|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~--~-----~~~~C~~c 46 (46)
T 2ytk_A 11 KPYKCNECGKVFTQNSHLTNHWR--IHTG--E-----KPSGPSSG 46 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH--HHSS--S-----SCSSCCCC
T ss_pred CCEeCCcCCCccCCHHHHHHHHH--HHCC--C-----CCCCCCCC
Confidence 34689999999998888888865 3532 1 23788877
No 213
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=26.35 E-value=35 Score=18.94 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=16.5
Q ss_pred eecCcccccccchHHHHHHHh
Q 015122 6 LKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~ 26 (413)
.+|..||..+.....-+.|..
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~ 23 (30)
T 1klr_A 3 YQCQYCEFRSADSSNLKTHIK 23 (30)
T ss_dssp CCCSSSSCCCSCSHHHHHHHH
T ss_pred ccCCCCCCccCCHHHHHHHHH
Confidence 478999999888777777754
No 214
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.31 E-value=38 Score=18.64 Aligned_cols=21 Identities=29% Similarity=0.708 Sum_probs=15.9
Q ss_pred eecCcccccccchHHHHHHHh
Q 015122 6 LKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~ 26 (413)
.+|..||..+.....-+.|..
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~ 23 (29)
T 2m0f_A 3 LKCRECGKQFTTSGNLKRHLR 23 (29)
T ss_dssp EECTTTSCEESCHHHHHHHHH
T ss_pred ccCCCCCCccCChhHHHHHHH
Confidence 478889988877777777754
No 215
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.76 E-value=21 Score=22.33 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=10.0
Q ss_pred hcccCCCCCCCCC
Q 015122 42 NLVCATCGKPCRS 54 (413)
Q Consensus 42 ~~~C~~C~~~~~~ 54 (413)
.|.|+.||+.+.+
T Consensus 11 ~~~C~~C~k~f~~ 23 (42)
T 2ytb_A 11 PYRCDQCGKAFSQ 23 (42)
T ss_dssp SBCCTTTTCCBSS
T ss_pred CeeCCCccchhCC
Confidence 4899999987533
No 216
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.49 E-value=35 Score=21.90 Aligned_cols=22 Identities=18% Similarity=0.489 Sum_probs=16.4
Q ss_pred eeecCcccccccchHHHHHHHh
Q 015122 5 SLKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~ 26 (413)
..+|..||..+.....-+.|..
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2ytt_A 12 PYQCSECGKSFSGSYRLTQHWI 33 (46)
T ss_dssp TTCCSSSCCCCSSHHHHHHHHT
T ss_pred CeeCCCCCcccCCHHHHHHHHH
Confidence 3578888888887777777754
No 217
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=25.30 E-value=3.3e+02 Score=23.55 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=10.9
Q ss_pred CCCCCHHHHHHHHHHH
Q 015122 175 KSSLTPEEIKLKAQEL 190 (413)
Q Consensus 175 k~~lT~eEk~~k~~el 190 (413)
++.+|-||-+.++..-
T Consensus 40 ~k~~SleEIqkKLeAA 55 (143)
T 3ryc_E 40 RRDPSLEEIQKKLEAA 55 (143)
T ss_dssp CCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 5678888876665443
No 218
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.09 E-value=48 Score=18.31 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=16.4
Q ss_pred eecCcccccccchHHHHHHHh
Q 015122 6 LKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~ 26 (413)
.+|..||..+.....-+.|..
T Consensus 4 ~~C~~C~~~f~~~~~l~~H~~ 24 (30)
T 2m0d_A 4 YQCDYCGRSFSDPTSKMRHLE 24 (30)
T ss_dssp EECTTTCCEESCHHHHHHHHH
T ss_pred ccCCCCCcccCCHHHHHHHHH
Confidence 578889988887777777754
No 219
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.93 E-value=40 Score=27.50 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=0.0
Q ss_pred CceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcc---cCCCCCCCCCcccccccccc
Q 015122 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLV---CATCGKPCRSKTETDLHRKR 64 (413)
Q Consensus 3 ~~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~---C~~C~~~~~~~~e~~~~~K~ 64 (413)
.+.-+|..||..+.....-+.|.. .-|..-++. ..... |+.|++.+.+......|.+.
T Consensus 1 E~~~~C~~C~~~f~~~~~L~~H~~-~~h~h~~~~---~~~C~~c~C~~c~~~f~~~~~l~~H~~~ 61 (155)
T 2gli_A 1 ETDCRWDGCSQEFDSQEQLVHHIN-SEHIHGERK---EFVCHWGGCSRELRPFKAQYMLVVHMRR 61 (155)
T ss_dssp CCBCCBTTCCCBCSCHHHHHHHHH-HHTSSSCSS---CCCCCBTTCTTTTCCCSSHHHHHHHTHH
T ss_pred CCcCCcCCCccccCCHHHHHHHHH-hhccCCCCc---ceeCCCCCccchhhhhhhHHHHHHHHHh
No 220
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.93 E-value=50 Score=21.02 Aligned_cols=23 Identities=26% Similarity=0.644 Sum_probs=16.2
Q ss_pred ceeecCcccccccchHHHHHHHh
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~ 26 (413)
-..+|..||..+.....-+.|..
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2ytg_A 11 KPFKCGECGKSYNQRVHLTQHQR 33 (46)
T ss_dssp CSEECTTTCCEESSSHHHHTTGG
T ss_pred CCeECCCCCcccCCHHHHHHHHH
Confidence 34678888888877777777753
No 221
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=24.55 E-value=37 Score=20.22 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=17.4
Q ss_pred eecCcccccccchHHHHHHHh
Q 015122 6 LKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~~ 26 (413)
.+|..||..+.....-+.|..
T Consensus 3 ~~C~~C~k~F~~~~~L~~H~~ 23 (33)
T 1rim_A 3 FACPECPKRFMRSDHLSKHIT 23 (33)
T ss_dssp CCCSSSCCCCSSHHHHHHHHH
T ss_pred ccCCCCCchhCCHHHHHHHHH
Confidence 479999999988888888864
No 222
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.19 E-value=49 Score=21.02 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=24.3
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C 48 (413)
-..+|..||..+.....-+.|.. .|.. ...|.|+.|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C 46 (46)
T 2yu8_A 11 KPYKCNECGKVFTQNSHLARHRR--VHTG-------GKPSGPSSG 46 (46)
T ss_dssp SSEECSSSCCEESSSHHHHHHTH--HHHS-------CCCSCSCCC
T ss_pred CCeECCcCCchhCCHHHHHHHHH--hcCC-------CCCCCCCCC
Confidence 34688899998888888777754 2432 123777776
No 223
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=24.15 E-value=28 Score=21.80 Aligned_cols=13 Identities=15% Similarity=0.659 Sum_probs=9.7
Q ss_pred CceeecCcccccc
Q 015122 3 GVSLKCGDCGALL 15 (413)
Q Consensus 3 ~~~l~C~~C~~~~ 15 (413)
.|+.||.+|....
T Consensus 4 ef~vqcpvcqq~m 16 (29)
T 3vhs_A 4 EFQVQCPVCQQMM 16 (29)
T ss_dssp -CEEECTTTCCEE
T ss_pred ceeeeChHHHHhC
Confidence 5888999997655
No 224
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=24.14 E-value=15 Score=22.40 Aligned_cols=12 Identities=42% Similarity=1.237 Sum_probs=10.4
Q ss_pred hhhcccCCCCCC
Q 015122 40 VLNLVCATCGKP 51 (413)
Q Consensus 40 ~~~~~C~~C~~~ 51 (413)
.++|.|.+|.+|
T Consensus 3 lvdffcetcskp 14 (26)
T 1loi_A 3 LVDFFCETCSKP 14 (26)
T ss_dssp HHHHHHHTSSCT
T ss_pred hHHHHHHhcCCc
Confidence 478999999987
No 225
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=24.03 E-value=97 Score=20.75 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=28.1
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 015122 116 ELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEH 153 (413)
Q Consensus 116 ~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h 153 (413)
+++.+.++ -|.+...|..-|..++. +++.|++=.|++
T Consensus 7 ~~i~~F~~iTg~~~~~A~~~L~~~~w-dle~Ai~~ff~~ 44 (46)
T 1v92_A 7 DALREFVAVTGAEEDRARFFLESAGW-DLQIALASFYED 44 (46)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTS-CSHHHHHHHHHT
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHcCC-CHHHHHHHHHcC
Confidence 44555553 68899999998888776 899999877764
No 226
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.43 E-value=56 Score=19.08 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=14.7
Q ss_pred eeecCcccccccchHHHHHHHh
Q 015122 5 SLKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~ 26 (413)
..+|..||..+.....-+.|..
T Consensus 7 ~~~C~~C~k~f~~~~~L~~H~~ 28 (35)
T 2elx_A 7 GYVCALCLKKFVSSIRLRSHIR 28 (35)
T ss_dssp SEECSSSCCEESSHHHHHHHHH
T ss_pred CeECCCCcchhCCHHHHHHHHH
Confidence 3567777777776666666654
No 227
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.18 E-value=2.2e+02 Score=20.72 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=31.8
Q ss_pred HHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 015122 115 KELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (413)
Q Consensus 115 ~~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (413)
.+++.+.++ .|-++..|..-|..++. +++.|++-.|++.+.
T Consensus 16 ~e~i~qF~~iTg~~~~~A~~~Le~~~W-nLe~Av~~ff~~~~~ 57 (62)
T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNN-NLEMAVTMFLDGGGS 57 (62)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTS-CHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHcCCCC
Confidence 345666654 78999999999988776 999999988876543
No 228
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=22.81 E-value=1.2e+02 Score=24.06 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 015122 246 EKRAREKIRQKLEED 260 (413)
Q Consensus 246 ~~~ar~ri~~qIe~D 260 (413)
...-.+.++++|+.|
T Consensus 57 r~~Kl~~~~e~l~~~ 71 (86)
T 3nr7_A 57 RTRKLQQYREMLIAD 71 (86)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 334445666667655
No 229
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.66 E-value=1.7e+02 Score=21.71 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=32.1
Q ss_pred HHHHHHHHh-CC-CCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 015122 115 KELLKELEA-MG-FPVARATRALHYSGNANVEAAVNWVVEHEND 156 (413)
Q Consensus 115 ~~~l~~L~~-MG-F~~~~a~kAL~~tgn~~~E~A~~Wl~~h~dd 156 (413)
.+.+.+.++ .| -+...|..-|..++. +++.|++=.|++.++
T Consensus 19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~W-nLe~Av~~ff~~~~~ 61 (67)
T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNW-NIEAAVQDRLNEQEG 61 (67)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTS-CHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCC
Confidence 456666665 57 788899999988887 899999988887553
No 230
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.96 E-value=37 Score=24.25 Aligned_cols=40 Identities=25% Similarity=0.569 Sum_probs=30.9
Q ss_pred ceeecCc--ccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCCCC
Q 015122 4 VSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (413)
Q Consensus 4 ~~l~C~~--C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~~~ 52 (413)
-..+|.. |+..+.....-+.|.. .|.. ...|.|+.||+.|
T Consensus 37 ~~~~C~~~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C~k~F 78 (79)
T 2dlk_A 37 KSFSCPEPACGKSFNFKKHLKEHMK--LHSD-------TRDYICEFSGPSS 78 (79)
T ss_dssp CCEECSCTTTCCEESSHHHHHHHHH--HHHT-------SCCCSCCSSSCCC
T ss_pred CCeECCCCCCcCccCCHHHHHHHHH--HhCC-------CCCeeCCCCCCCC
Confidence 3468998 9999999999999986 2532 1348999999864
No 231
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=21.93 E-value=43 Score=25.52 Aligned_cols=29 Identities=31% Similarity=0.739 Sum_probs=19.5
Q ss_pred ceeecCcccccccchHHHHHHHhhhccCCCCcchhhhhhcccCCCCC
Q 015122 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 4 ~~l~C~~C~~~~~~~~~aq~h~~~tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
++++|.+|+.. -..|+-.+ ..-.|..||.
T Consensus 6 m~VKCp~C~ni---------------q~VFShA~---tvV~C~~Cg~ 34 (66)
T 1qxf_A 6 VKVKCPDCEHE---------------QVIFDHPS---TIVKCIICGR 34 (66)
T ss_dssp EEEECTTTCCE---------------EEEESSCS---SCEECSSSCC
T ss_pred EEEECCCCCCc---------------eEEEecCc---eEEEcccCCC
Confidence 47889999865 34566552 2237999986
No 232
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=21.84 E-value=28 Score=29.48 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=30.7
Q ss_pred eecCccccccc----chHHHHHHHhh---hccCCCCcchhhhhhcccCCCCC
Q 015122 6 LKCGDCGALLR----SVQEAQEHAEL---TSHSNFSESTEAVLNLVCATCGK 50 (413)
Q Consensus 6 l~C~~C~~~~~----~~~~aq~h~~~---tgh~~F~e~~e~~~~~~C~~C~~ 50 (413)
--|..||.|+= ++.-|..|.+. |||...-... .....|=.|+.
T Consensus 55 w~CL~CG~vgCgr~~~~~Ha~~H~~~~~~t~H~l~~~l~--t~~vwCY~cd~ 104 (126)
T 2i50_A 55 WLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLD--NWSVWCYVCDN 104 (126)
T ss_dssp EEETTTCCEEECTTSSSCHHHHHHHSCCSSCCCEEEETT--TCCEEETTTTE
T ss_pred eeeeeCCccccCCCCcchHHHHHHhCcCCCCCcEEEECC--CCeEEeCCCCc
Confidence 46888999972 45779999998 7898765542 12367777764
No 233
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.68 E-value=55 Score=19.33 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=12.3
Q ss_pred eecCcccccccchHHHHHHH
Q 015122 6 LKCGDCGALLRSVQEAQEHA 25 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h~ 25 (413)
.+|..||..+.....-+.|.
T Consensus 10 ~~C~~C~k~f~~~~~l~~H~ 29 (36)
T 2elr_A 10 HLCDMCGKKFKSKGTLKSHK 29 (36)
T ss_dssp CBCTTTCCBCSSHHHHHHHH
T ss_pred eecCcCCCCcCchHHHHHHH
Confidence 45666666666665555554
No 234
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=21.36 E-value=50 Score=31.41 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=10.1
Q ss_pred ceeecCccccccc
Q 015122 4 VSLKCGDCGALLR 16 (413)
Q Consensus 4 ~~l~C~~C~~~~~ 16 (413)
++++|..|+....
T Consensus 135 ~~~~C~~C~~~~~ 147 (289)
T 1q1a_A 135 AHCHCIGCGKVYP 147 (289)
T ss_dssp EEEEETTTCCEEC
T ss_pred CceEECCCCCCCc
Confidence 5789999987653
No 235
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.00 E-value=28 Score=26.23 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=8.0
Q ss_pred hhhccCCCCcchhhhhhcccCCCCCC
Q 015122 26 ELTSHSNFSESTEAVLNLVCATCGKP 51 (413)
Q Consensus 26 ~~tgh~~F~e~~e~~~~~~C~~C~~~ 51 (413)
..||-++++......+.|.|..||..
T Consensus 5 ~~~~g~~~~~~~~~~v~Y~C~~Cg~~ 30 (63)
T 3h0g_L 5 TSTGGTAFNPPRPATMIYLCADCGAR 30 (63)
T ss_dssp --------------CCCCBCSSSCCB
T ss_pred ccCCccccCCCCCCCeEEECCCCCCe
Confidence 34566666665444556777777753
No 236
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.00 E-value=69 Score=18.98 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=15.6
Q ss_pred eeecCcccccccchHHHHHHHh
Q 015122 5 SLKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~ 26 (413)
..+|..||+.+.....-+.|..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2els_A 9 IFTCEYCNKVFKFKHSLQAHLR 30 (36)
T ss_dssp CEECTTTCCEESSHHHHHHHHH
T ss_pred CEECCCCCceeCCHHHHHHHHH
Confidence 4578888888877766666654
No 237
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.81 E-value=67 Score=19.03 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=15.9
Q ss_pred eeecCcccccccchHHHHHHHh
Q 015122 5 SLKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~ 26 (413)
..+|..|+..+.....-+.|..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elq_A 9 PFKCSLCEYATRSKSNLKAHMN 30 (36)
T ss_dssp SEECSSSSCEESCHHHHHHHHH
T ss_pred CccCCCCCchhCCHHHHHHHHH
Confidence 4678888888877777777753
No 238
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=20.72 E-value=64 Score=19.66 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=15.8
Q ss_pred eeecCcccccccchHHHHHHHh
Q 015122 5 SLKCGDCGALLRSVQEAQEHAE 26 (413)
Q Consensus 5 ~l~C~~C~~~~~~~~~aq~h~~ 26 (413)
..+|..||..+.....-..|..
T Consensus 6 ~~~C~~C~k~f~~~~~L~~H~~ 27 (39)
T 1njq_A 6 SYTCSFCKREFRSAQALGGHMN 27 (39)
T ss_dssp SEECTTTCCEESSHHHHHHHHH
T ss_pred ceECCCCCcccCCHHHHHHHHH
Confidence 4578888888877777777754
No 239
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=20.44 E-value=61 Score=19.32 Aligned_cols=19 Identities=21% Similarity=0.539 Sum_probs=9.5
Q ss_pred eecCcccccccchHHHHHH
Q 015122 6 LKCGDCGALLRSVQEAQEH 24 (413)
Q Consensus 6 l~C~~C~~~~~~~~~aq~h 24 (413)
.+|..||..+.....-+.|
T Consensus 12 ~~C~~C~k~f~~~~~l~~H 30 (37)
T 1p7a_A 12 FQCPDCDRSFSRSDHLALH 30 (37)
T ss_dssp BCCTTTCCCBSSHHHHHHH
T ss_pred ccCCCCCcccCcHHHHHHH
Confidence 3455555555544444444
No 240
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.21 E-value=45 Score=28.27 Aligned_cols=45 Identities=18% Similarity=0.418 Sum_probs=22.2
Q ss_pred ceeecCcccccccc----hHHHHH-HHhhhccCCCCcc-hhhhhhcccCCCCCC
Q 015122 4 VSLKCGDCGALLRS----VQEAQE-HAELTSHSNFSES-TEAVLNLVCATCGKP 51 (413)
Q Consensus 4 ~~l~C~~C~~~~~~----~~~aq~-h~~~tgh~~F~e~-~e~~~~~~C~~C~~~ 51 (413)
.-+.|..||.+..= ....+. .+..+| |.-. ...++--.|+.|.++
T Consensus 89 ~HliC~~Cg~v~~~~~~~~~~~~~~~~~~~g---f~i~~~~l~~~GiC~~C~~~ 139 (145)
T 3eyy_A 89 IHLVCRDCTNVIEADLSVAADFTAKLREQFG---FDTDMKHFAIFGRCESCSLK 139 (145)
T ss_dssp EEEEESSSSCEEEECGGGGHHHHHHHHHHTC---EEECSCSSCEEEEECC----
T ss_pred eEEEECCCCCEEEecCccHHHHHHHHHHhCC---CEEEeEEEEEEEECHHHhCc
Confidence 34889999999722 122222 233233 4221 133455689999764
No 241
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=20.04 E-value=1.7e+02 Score=30.60 Aligned_cols=14 Identities=14% Similarity=-0.083 Sum_probs=7.8
Q ss_pred CCCCHHHHHHHHHH
Q 015122 139 GNANVEAAVNWVVE 152 (413)
Q Consensus 139 gn~~~E~A~~Wl~~ 152 (413)
.+.+...|.-+.+.
T Consensus 180 ~G~s~~eA~~~yL~ 193 (575)
T 2i1j_A 180 RGMLREDAMMEYLK 193 (575)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH
Confidence 34566677655443
Done!