BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015124
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 546 bits (1408), Expect = e-156, Method: Compositional matrix adjust.
Identities = 267/409 (65%), Positives = 311/409 (76%), Gaps = 8/409 (1%)
Query: 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++
Sbjct: 1 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 60
Query: 62 SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PR
Sbjct: 61 SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 120
Query: 122 LIPGMLLVINIEQLIQLFKDLANLNWCLVISLSVFDV---PEGKDEKTELEVYNFTGEGG 178
L+PG I I + D +V F + P+ + EVYNF GG
Sbjct: 121 LVPGWTKPITIGR--HAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GG 177
Query: 179 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKS 238
V + MYNTDESI FA + A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+
Sbjct: 178 VGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKT 237
Query: 239 KFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVC 298
F+ IWYEHRLIDDMVA LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVC
Sbjct: 238 DFDKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVC 297
Query: 299 PDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTE 358
PDGKTIEAEAAHGTVTRHYR HQKG TSTN IASIFAW+RGL HR KLD N L+ F +
Sbjct: 298 PDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQ 357
Query: 359 KLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 405
LE C+ TVESG MTKDLA IHG + EH+LNT +F+D + +L
Sbjct: 358 TLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 406
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
Length = 425
Score = 520 bits (1339), Expect = e-148, Method: Compositional matrix adjust.
Identities = 254/403 (63%), Positives = 306/403 (75%), Gaps = 6/403 (1%)
Query: 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNV 71
+VEM GDEMTR+ W+ IK+KLIFP++ELD+ +DLG+ NRDAT+D+VT ++AEA K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 72 AIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGMLLVIN 131
+KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ G + I
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 132 IEQLIQLFKDLANLNWCLVISLSVFDV---PEGKDEKTELEVYNFTGEGGVALSMYNTDE 188
I + D +V ++ P +K V+NF GGVA+ MYN D+
Sbjct: 130 IGH--HAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDK 187
Query: 189 SIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE 248
SI FA +S A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA IWYE
Sbjct: 188 SIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYE 247
Query: 249 HRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEA 308
HRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEA
Sbjct: 248 HRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEA 307
Query: 309 AHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTV 368
AHGTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN L F LE I T+
Sbjct: 308 AHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETI 367
Query: 369 ESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 410
E+G MTKDLA I G + R YLNT EF+D + ++L+ +L+
Sbjct: 368 EAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 410
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T09|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T0L|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|D Chain D, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
Length = 414
Score = 520 bits (1338), Expect = e-148, Method: Compositional matrix adjust.
Identities = 254/403 (63%), Positives = 307/403 (76%), Gaps = 6/403 (1%)
Query: 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNV 71
+VEM GDEMTR+ W+ IK+KLIFP++ELD+ +DLG+ NRDAT+D+VT ++AEA K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 72 AIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGMLLVIN 131
+KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ G + I
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 132 IEQLIQLFKDLANLNWCLVISLSVFDV---PEGKDEKTELEVYNFTGEGGVALSMYNTDE 188
I + + D +V ++ P +K V+NF GGVA+ MYN D+
Sbjct: 130 IGR--HAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDK 187
Query: 189 SIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE 248
SI FA +S A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA IWYE
Sbjct: 188 SIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYE 247
Query: 249 HRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEA 308
HRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEA
Sbjct: 248 HRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEA 307
Query: 309 AHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTV 368
AHGTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN L F LE I T+
Sbjct: 308 AHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETI 367
Query: 369 ESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 410
E+G MTKDLA I G + R YLNT EF+D + ++L+ +L+
Sbjct: 368 EAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 410
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 419
Score = 520 bits (1338), Expect = e-148, Method: Compositional matrix adjust.
Identities = 254/403 (63%), Positives = 307/403 (76%), Gaps = 6/403 (1%)
Query: 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNV 71
+VEM GDEMTR+ W+ IK+KLIFP++ELD+ +DLG+ NRDAT+D+VT ++AEA K+NV
Sbjct: 15 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 74
Query: 72 AIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGMLLVIN 131
+KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ G + I
Sbjct: 75 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 134
Query: 132 IEQLIQLFKDLANLNWCLVISLSVFDV---PEGKDEKTELEVYNFTGEGGVALSMYNTDE 188
I + + D +V ++ P +K V+NF GGVA+ MYN D+
Sbjct: 135 IGR--HAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDK 192
Query: 189 SIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE 248
SI FA +S A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA IWYE
Sbjct: 193 SIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYE 252
Query: 249 HRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEA 308
HRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEA
Sbjct: 253 HRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEA 312
Query: 309 AHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTV 368
AHGTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN L F LE I T+
Sbjct: 313 AHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETI 372
Query: 369 ESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 410
E+G MTKDLA I G + R YLNT EF+D + ++L+ +L+
Sbjct: 373 EAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 415
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMJ|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMV|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
pdb|2CMV|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
Length = 410
Score = 520 bits (1338), Expect = e-148, Method: Compositional matrix adjust.
Identities = 254/403 (63%), Positives = 309/403 (76%), Gaps = 6/403 (1%)
Query: 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNV 71
+VEM GDEMTR+ W+ IK+KLI P++ELD+ +DLG+ NRDAT+D+VT ++AEA KYNV
Sbjct: 7 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 66
Query: 72 AIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGMLLVIN 131
+KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ G + I
Sbjct: 67 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPII 126
Query: 132 IEQLIQLFKDLANLNWCLVISLSVFDV---PEGKDEKTELEVYNFTGEGGVALSMYNTDE 188
I + + D +V ++ P+ +K V++F GGVA+ MYN D+
Sbjct: 127 IGR--HAYGDQYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGMYNQDK 184
Query: 189 SIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE 248
SI FA +S A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA I YE
Sbjct: 185 SIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFEAQNICYE 244
Query: 249 HRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEA 308
HRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEA
Sbjct: 245 HRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEA 304
Query: 309 AHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTV 368
AHGTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN L F + LE CI T+
Sbjct: 305 AHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETI 364
Query: 369 ESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 410
E+G MTKDLA I G + R YLNT EF+D + ++L+A+L+
Sbjct: 365 EAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 407
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAP|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAR|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAR|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAS|A Chain A, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 422
Score = 519 bits (1337), Expect = e-147, Method: Compositional matrix adjust.
Identities = 254/403 (63%), Positives = 306/403 (75%), Gaps = 6/403 (1%)
Query: 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNV 71
+VEM GDEMTR+ W+ IK+KLIFP++ELD+ +DLG+ NRDAT+D+VT ++AEA K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 72 AIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGMLLVIN 131
+KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ G + I
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 132 IEQLIQLFKDLANLNWCLVISLSVFDV---PEGKDEKTELEVYNFTGEGGVALSMYNTDE 188
I + D +V ++ P +K V+NF GGVA+ MYN D+
Sbjct: 130 IGH--HAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDK 187
Query: 189 SIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE 248
SI FA +S A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA IWYE
Sbjct: 188 SIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYE 247
Query: 249 HRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEA 308
HRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEA
Sbjct: 248 HRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEA 307
Query: 309 AHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTV 368
AHGTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN L F LE I T+
Sbjct: 308 AHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETI 367
Query: 369 ESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 410
E+G MTKDLA I G + R YLNT EF+D + ++L+ +L+
Sbjct: 368 EAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 410
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3US8|B Chain B, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 427
Score = 503 bits (1294), Expect = e-142, Method: Compositional matrix adjust.
Identities = 256/406 (63%), Positives = 309/406 (76%), Gaps = 13/406 (3%)
Query: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAE 64
KIKVANP+VE+DGDE TR+ W+ IKDKLI P+L+LD++Y+DLG+ NRDATDD+VT+++A
Sbjct: 26 KIKVANPVVELDGDEXTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAAN 85
Query: 65 ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIP 124
A K+ V +KCATITPDE RV+EF LK+ WKSPNGTIRNIL G +FREPIICKNVPRL+P
Sbjct: 86 AIKKHGVGVKCATITPDEGRVEEFKLKKXWKSPNGTIRNILGGVIFREPIICKNVPRLVP 145
Query: 125 GMLLVINIEQLIQLFKD---LANLNWCLVISLSVFDVPEGKDEKT-ELEVYNFTGEGGVA 180
G I + + F D + + LS+ V G+D +T E +VY+ G GVA
Sbjct: 146 GWTKPIIVGR--HAFGDQYRATDFKFPGKGKLSIKFV--GEDGQTIEHDVYDAPG-AGVA 200
Query: 181 LSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 240
L+ YN DESI FA AS N Q+K P+YLSTKNTILK YDGRFKDIFQ+V++ + ++F
Sbjct: 201 LAXYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQF 260
Query: 241 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 300
+A +WYEHRLIDD VA ALK GGYVWACKNYDGDVQSD +AQGFGSLGL TSVL PD
Sbjct: 261 KAEKLWYEHRLIDDXVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLXTSVLXTPD 320
Query: 301 GKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKL 360
GKT+EAEAAHGTVTRHYR HQKG ETSTNSIASIFAW+RGLAHRAKLD NA L F+E L
Sbjct: 321 GKTVEAEAAHGTVTRHYRQHQKGEETSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETL 380
Query: 361 EAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 406
E C+ TVESG TKDLAL+I + +L+T F+D + ++LR
Sbjct: 381 ERVCVDTVESGFXTKDLALLIG----PDQPWLSTTGFLDKIDENLR 422
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
pdb|4HCX|B Chain B, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
Length = 409
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/409 (60%), Positives = 300/409 (73%), Gaps = 9/409 (2%)
Query: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAE 64
KIKV+ P+VE+DGDEMTRV WK IKD LI P+L++ + Y+DLG+ +RDATDD+VT+++A
Sbjct: 6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAY 65
Query: 65 ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIP 124
A K+ V +KCATITPDEARV+EF LK+MW SPNGTIRNIL GT+FREPI+ NVPRL+P
Sbjct: 66 AIKKHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVP 125
Query: 125 GMLLVINIEQLIQLFKD---LANLNWCLVISLSVFDVPEGKDEKTELEVYNFTGEGGVAL 181
G I I + F D N ++++ P E+ + +GGV L
Sbjct: 126 GWTKPIVIGR--HAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVL 183
Query: 182 SMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFE 241
MYN ESIR FA AS + KWP+YLSTKNTILK YDG FKD F+ VYE +K++FE
Sbjct: 184 GMYNFKESIRDFARASFSYGLNAKWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFE 243
Query: 242 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 301
AAG+ YEHRLIDDMVA LK EGGYVWACKNYDGDVQSD +AQG+GSLGLMTSVL+ DG
Sbjct: 244 AAGLTYEHRLIDDMVAACLKWEGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTADG 303
Query: 302 KTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLE 361
KT+EAEAAHGTVTRHYR +Q G TSTN IASIFAW+RGL HR KLD ++DF KLE
Sbjct: 304 KTVEAEAAHGTVTRHYRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEVIDFAHKLE 363
Query: 362 AACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 410
+ I TVESGKMTKDLA++I + +LN+EEF+DA+AD+L L+
Sbjct: 364 SVVIATVESGKMTKDLAILIG----PEQDWLNSEEFLDAIADNLEKELA 408
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 484 bits (1245), Expect = e-137, Method: Compositional matrix adjust.
Identities = 252/414 (60%), Positives = 299/414 (72%), Gaps = 11/414 (2%)
Query: 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
AF KIKV P+VE+DGDEMTR+ W IK KLI P+L++D+KY+DL + +RDAT DK+T +
Sbjct: 15 AFSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQD 74
Query: 62 SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
+AEA KY V IKCATITPDEARVKEF L +MWKSPNGTIRNIL GTVFREPI+ +PR
Sbjct: 75 AAEAIKKYGVGIKCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPR 134
Query: 122 LIPGMLLVINIEQLIQLFKDLANLNWCLVI---SLSVFDVPEGKD--EKTELEVYNFTGE 176
L+P I I + D L+ SL + P + L+VY++ G
Sbjct: 135 LVPRWEKPIIIGR--HAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKGS 192
Query: 177 GGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANW 236
G VA++MYNTDESI FA +S A KK L+LSTKNTILKKYDGRFKDIFQEVYEA +
Sbjct: 193 G-VAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQY 251
Query: 237 KSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVL 296
KSKFE GI YEHRLIDDMVA +KS+GG++ A KNYDGDVQSD +AQGFGSLGLMTS+L
Sbjct: 252 KSKFEQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSIL 311
Query: 297 VCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDF 356
V PDGKT E+EAAHGTVTRHYR +QKG ETSTNSIASIFAWSRGL R +LDN L F
Sbjct: 312 VTPDGKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKF 371
Query: 357 TEKLEAACIGTVES-GKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 409
LE+A + TV+ G MTKDLAL ++ R Y+ TEEF+DAV L+ +
Sbjct: 372 ANILESATLNTVQQDGIMTKDLALACGNNE--RSAYVTTEEFLDAVEKRLQKEI 423
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|B Chain B, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|C Chain C, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|D Chain D, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOU|A Chain A, Ctidh Bound To Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 397 bits (1019), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/399 (51%), Positives = 273/399 (68%), Gaps = 9/399 (2%)
Query: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAE 64
KIK+ P+VEMDGDEMTR+ W+ IK+ L+ P++EL+ +Y+DLGL NRD T+D+VT+++A
Sbjct: 3 KIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDAAR 62
Query: 65 ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIP 124
A KY V +KCATITP+ RV+E+ LK+MWKSPNGTIR IL+GTVFR PI+ ++ +
Sbjct: 63 AIQKYGVGVKCATITPNAQRVEEYNLKKMWKSPNGTIRAILDGTVFRAPIVVNSIKPFVK 122
Query: 125 GMLLVINIEQLI--QLFKDLANLNWCLVISLSVFDVPEGKDEKTELEVYNFTGEGGVALS 182
G I+I + ++K++ + VF G E + ++ F G GV +
Sbjct: 123 GWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENG--EVSRQTIHEFDGP-GVIMG 179
Query: 183 MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA 242
M+NTD+SIR+FA A N A L+ STK+TI K YD RFKDIFQE+YE +K KFEA
Sbjct: 180 MHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEA 239
Query: 243 AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK 302
+ Y + LIDD VA ++SEGG VWACKNYDGDV SD +A FGSL +MTSVLV PDGK
Sbjct: 240 KNLQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDGK 299
Query: 303 TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEA 362
E EAAHGTVTRHY H KG ETSTNS+A+IFAW+ L R +LD L+DF KLE
Sbjct: 300 -YEFEAAHGTVTRHYYKHLKGEETSTNSMATIFAWTGALKKRGELDGIKELVDFATKLEQ 358
Query: 363 ACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAV 401
A + T+E+G MTKDLA + S++ + +NTE+F+ +
Sbjct: 359 ASVQTIENGVMTKDLASL---SEVPEKKIVNTEDFLKEI 394
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
pdb|1ZOR|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
Length = 399
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 201/407 (49%), Positives = 267/407 (65%), Gaps = 8/407 (1%)
Query: 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVES 62
+K+KV NPIVE+DGDEM RV WK IK+KLI P+L++ + YFDLG+ RD TDD++T+E+
Sbjct: 1 MEKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEA 60
Query: 63 AEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRL 122
A+A KY V +KCATITPD RVKE+ LK+ WKSPN TIR L+GTVFR+PI+ KNVP L
Sbjct: 61 AKAIKKYGVGVKCATITPDAERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPL 120
Query: 123 IPGMLLVINIEQLIQLFKDLANLNWCLVISLSVFDVPEGKDEKTELEVYNFTGEGGVALS 182
+ I I + + D+ N V + ++ E L V+ F G GV ++
Sbjct: 121 VKRWKKPIIIGR--HAYGDIYNAVEAKVEGPAEVELVVRNKENKTLLVHKFEG-NGVVMA 177
Query: 183 MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA 242
M+N ++SIR+FA++ +N A +K ++ +TK+TI K Y FKDIFQE + K + E
Sbjct: 178 MHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKR-KEELEK 236
Query: 243 AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK 302
AG+ Y + LIDD A L+SEGG +WAC NY+GD+ SD +A GFGSLGLMTSVLV PDG
Sbjct: 237 AGVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDG- 295
Query: 303 TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEA 362
E EAAHGTV RHY + KG +TSTN ASIFAW+ + R +LD + +F +KLE
Sbjct: 296 VYEFEAAHGTVRRHYYRYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEVCEFADKLEK 355
Query: 363 ACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 409
A I T+ESG +TKDL ++ + Y+ EEFID V +L L
Sbjct: 356 AVINTIESGVITKDLQPF---TEPPIDKYVTLEEFIDEVKKNLEKLL 399
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|B Chain B, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|C Chain C, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|D Chain D, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXR|A Chain A, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|2UXR|B Chain B, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|4AOV|A Chain A, Dpidh-Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 337 bits (865), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 183/410 (44%), Positives = 256/410 (62%), Gaps = 21/410 (5%)
Query: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAE 64
KI++ P+VE+DGDEMTRV W IKDKL+ PF++L +Y+DLG+ RD T+D++T+++AE
Sbjct: 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAE 61
Query: 65 ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNV----- 119
A KY V +K ATITP++ RV+E+ LK+ WKSPN T+R +L+GTVFR+PI+ KN+
Sbjct: 62 AIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVR 121
Query: 120 ---PRLIPGMLLVINIEQLIQLFKDLANLNWCLVISLSVFDVPEGKDEKTELEVYNFTGE 176
++ G + + ++F + + + V D + +T +EV E
Sbjct: 122 SWQKPIVVGRHAYGDFYKNAEIFAEAGG-----KLEIVVTDKNGKETRQTIMEV----DE 172
Query: 177 GGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANW 236
+ ++NT SI FA A + +K + +TK+TI K+YD RFK IF+E++ +
Sbjct: 173 PAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEY 232
Query: 237 KSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVL 296
K KF AAGI Y + LIDD+VA +K+EGG +WACKNYDGDV SD +A FGSL +M+SVL
Sbjct: 233 KEKFAAAGIEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVL 292
Query: 297 VCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDF 356
V P G E EAAHGTV RHY H KG TSTN +A I+AW+ L R +LD L F
Sbjct: 293 VSPYG-YFEYEAAHGTVQRHYYQHLKGERTSTNPVALIYAWTGALRKRGELDGTPDLCAF 351
Query: 357 TEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 406
+ LEA I +ESG MT DLA I + + L++ EFID + L+
Sbjct: 352 CDSLEAITIECIESGYMTGDLARICEPAAI---KVLDSIEFIDELGKRLQ 398
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 19/164 (11%)
Query: 245 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 303
+ EH ID+ L+ + V C N GD+ SD +A GS+GL+ S+ + G
Sbjct: 228 VELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFG 287
Query: 304 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAA 363
+ E A G+ G+ N +A I + + L H KL++ A +EAA
Sbjct: 288 M-YEPAGGSAP------DIAGQGIANPVAQILSAALLLRHSLKLEDAAL------AIEAA 334
Query: 364 CIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRA 407
+ SG +T +L S R T + D +AD ++A
Sbjct: 335 VSKALNSGYLTGELL-----SSDQRHKAKTTVQMGDFIADAVKA 373
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 210 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 259
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 260 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 315
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 316 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 375
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 376 DLALIIHGSKMTREHYLNTEEFIDAVADDL 405
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 210 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 259
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 260 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 315
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 316 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 375
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 376 DLALIIHGSKMTREHYLNTEEFIDAVADDL 405
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 210 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 259
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 260 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 315
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 316 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 375
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 376 DLALIIHGSKMTREHYLNTEEFIDAVADDL 405
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 210 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 259
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 260 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 315
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 316 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 375
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 376 DLALIIHGSKMTREHYLNTEEFIDAVADDL 405
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 210 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 259
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 260 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 315
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 316 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 375
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 376 DLALIIHGSKMTREHYLNTEEFIDAVADDL 405
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 210 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 259
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 260 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 315
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 316 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 375
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 376 DLALIIHGSKMTREHYLNTEEFIDAVADDL 405
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 210 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 259
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 225 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 284
Query: 260 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 315
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 285 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 342
Query: 316 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 375
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 343 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 389
Query: 376 DLALIIHGSKMTREHYLNTEEFIDAVADDL 405
D ++ G+K+ L EF DA+ +++
Sbjct: 390 DFERLMDGAKL-----LKCSEFGDAIIENM 414
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 210 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 259
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 260 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 315
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 316 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 375
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 376 DLALIIHGSKMTREHYLNTEEFIDAVADDL 405
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 210 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 259
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 260 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 315
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 316 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 375
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 376 DLALIIHGSKMTREHYLNTEEFIDAVADDL 405
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 34/210 (16%)
Query: 210 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 259
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 260 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 315
L+ V AC N +GD SD LA G +G+ + + EA HGT
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDEYALF--EATHGTAP- 343
Query: 316 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 375
G+ N + I + L H + ++ E G + + +TK
Sbjct: 344 -----DIAGQDKANPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTK 391
Query: 376 DLALIIHGSKMTREHYLNTEEFIDAVADDL 405
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFESLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 83/210 (39%), Gaps = 34/210 (16%)
Query: 210 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 259
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 260 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 315
L+ V AC N +GD SD LA G +G+ + + EA HGT
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPA 344
Query: 316 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 375
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 376 DLALIIHGSKMTREHYLNTEEFIDAVADDL 405
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 84/213 (39%), Gaps = 36/213 (16%)
Query: 210 LSTKNTILKKYDGRFKDIFQEVYEA--------------NWKSKFEAAGIWYEHRLIDDM 255
L K I+K +G F+D EV + + K I + R+ D+M
Sbjct: 220 LVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIVVKDRIADNM 279
Query: 256 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVT 314
L Y V A N +GD SD A G LG+ + DG + E HG+
Sbjct: 280 FQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIG-DGIGV-FEPVHGSAP 337
Query: 315 RHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMT 374
++ G+ N A I + + D +E ++ A T+ SG +T
Sbjct: 338 KY------AGQNKVNPTAEILTGALMFEYIG-------WKDASEMIKKAVEMTISSGIVT 384
Query: 375 KDLALIIHGSKMTREHYLNTEEFIDAVADDLRA 407
D+ + G+K + T EF +AV ++L++
Sbjct: 385 YDIHRHMGGTK------VGTREFAEAVVENLQS 411
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 34/206 (16%)
Query: 214 NTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA------ 259
I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 231 GNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQIL 290
Query: 260 LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV 319
L+ V AC N +GD SD LA G +G+ + + EA HGT ++
Sbjct: 291 LRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPKY--- 345
Query: 320 HQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLAL 379
G+ N + I + L H + ++ E G + + +T D
Sbjct: 346 ---AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTYDFER 395
Query: 380 IIHGSKMTREHYLNTEEFIDAVADDL 405
++ G+K+ L EF DA+ +++
Sbjct: 396 LMDGAKL-----LKCSEFGDAIIENM 416
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 245 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 303
+ EH ID+ L+ + V C N GD+ SD +A GS+GL+ S+ + G
Sbjct: 228 VELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFG 287
Query: 304 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAA 363
+ E A G+ G+ N +A I + + L H KL++ A +EAA
Sbjct: 288 M-YEPAGGSAP------DIAGQGIANPVAQILSAALLLRHSLKLEDAAL------AIEAA 334
Query: 364 CIGTVESGKMTKDL 377
+ G +T +L
Sbjct: 335 VSKALSDGYLTCEL 348
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 19/164 (11%)
Query: 245 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 303
+ EH ID+ L+ + V C N GD+ SD +A GS+GL++S + G
Sbjct: 228 VELEHIYIDNATMQLLRRPDEFDVMLCSNLFGDILSDEIAMLTGSMGLLSSASMNSTGFG 287
Query: 304 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAA 363
+ E A G+ G+ N IA I + + L H K + A +E A
Sbjct: 288 L-FEPAGGSAP------DIAGKGIANPIAQILSAALMLRHSLKQEEAA------SAIERA 334
Query: 364 CIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRA 407
+ SG +T +L S R T + D +AD ++A
Sbjct: 335 VTKALNSGYLTGELL-----SSDQRHKAKTTVQMGDFIADAVKA 373
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 33/236 (13%)
Query: 175 GEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 234
GE ++ T E I + A +K + K +L+ +++EV E
Sbjct: 173 GEEAAVDTLLYTREEIERIIRKAFELALTRKKKVTSVDKANVLES-----SRLWREVAEE 227
Query: 235 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 293
K E + EH L+D+ +++ + V +N GD+ SD + GSLG++
Sbjct: 228 VAK---EYPDVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLP 284
Query: 294 SVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARL 353
S + DG + E HG+ G+ N +A+I + + L + L+ A+
Sbjct: 285 SASLSTDGLGL-YEPVHGSAP------DIAGKGIANPLATILSAAMMLRYSFGLEEEAK- 336
Query: 354 LDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFID----AVADDL 405
+E A + G T D+A G K Y++T E D AV D+L
Sbjct: 337 -----AIEKAVEKVLAEGYRTADIAK--PGGK-----YVSTTEMTDEVKAAVVDEL 380
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 249 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAE 307
H ID+ +K + V C N GD+ SD A GS+G++ S + G + E
Sbjct: 223 HMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGL-YE 281
Query: 308 AAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGT 367
A G+ G+ N IA I + + L R LD N D +E A
Sbjct: 282 PAGGSAP------DIAGKNIANPIAQILSLA--LLLRYSLDAN----DAATAIEQAINRA 329
Query: 368 VESGKMTKDLA 378
+E G T DLA
Sbjct: 330 LEEGVRTGDLA 340
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 84/201 (41%), Gaps = 34/201 (16%)
Query: 208 LYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY- 266
++ +TK+ I+K +G K F++V + E I H ++D+ +K +
Sbjct: 186 VHCATKSNIMKLAEGTLKRAFEQVAQ-------EYPDIEAVHIIVDNAAHQLVKRPEQFE 238
Query: 267 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEA-EAAHGTVTRHYRVHQKGGE 325
V N +GD+ SD + G LG S + G + EA HG+ ++ G+
Sbjct: 239 VIVTTNMNGDILSDLTSGLIGGLGFAPSANI---GNEVAIFEAVHGSAPKY------AGK 289
Query: 326 TSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGK-MTKDLALIIHGS 384
N A + + L + + + +E A + T+E G+ +T D+ G+
Sbjct: 290 NVINPTAVLLSAVMMLRYLEEFAT-------ADLIENALLYTLEEGRVLTGDVVGYDRGA 342
Query: 385 KMTREHYLNTEEFIDAVADDL 405
K T E+ +A+ +L
Sbjct: 343 KTT--------EYTEAIIQNL 355
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 236 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 289
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 290 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 348
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 349 NNAR 352
AR
Sbjct: 306 ELAR 309
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 236 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 289
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 290 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 348
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 349 NNAR 352
AR
Sbjct: 306 ELAR 309
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 236 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 289
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 290 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 348
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 349 NNAR 352
AR
Sbjct: 306 ELAR 309
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 236 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 289
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 290 GLMTSVLVCPDGKTIEA-EAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 348
GL+ S + G+ E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 349 NNAR 352
AR
Sbjct: 306 ELAR 309
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 236 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 289
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 290 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 348
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 349 NNAR 352
AR
Sbjct: 306 ELAR 309
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 236 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 289
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 290 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 348
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 349 NNAR 352
AR
Sbjct: 306 ELAR 309
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 236 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 289
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 290 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 348
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 349 NNAR 352
AR
Sbjct: 306 ELAR 309
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 236 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 289
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 198 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 257
Query: 290 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 348
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 258 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 308
Query: 349 NNAR 352
AR
Sbjct: 309 ELAR 312
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 236 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 289
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 290 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 348
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 349 NNAR 352
AR
Sbjct: 306 ELAR 309
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 84/197 (42%), Gaps = 24/197 (12%)
Query: 183 MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA 242
+Y+ DE IR A + A ++ L K +L+ ++++ EV +
Sbjct: 161 VYDEDE-IRRIAHVAFRAAQGRRKQLCSVDKANVLETTR-LWREVVTEVAR-------DY 211
Query: 243 AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 301
+ H +D+ +++ + V N GD+ SD +Q GS+G++ S + +G
Sbjct: 212 PDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLG-EG 270
Query: 302 KTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLE 361
+ + E HG+ G+ N +A+I + + L H + + +++E
Sbjct: 271 RAMY-EPIHGSAP------DIAGQDKANPLATILSVAMMLRHSLNAEP------WAQRVE 317
Query: 362 AACIGTVESGKMTKDLA 378
AA ++ G T D+A
Sbjct: 318 AAVQRVLDQGLRTADIA 334
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 236 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 289
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 290 GLMTSVLVCPDGKTIEA-EAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 348
GL+ S + G+ E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 349 NNAR 352
AR
Sbjct: 306 ELAR 309
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 236 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 289
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 290 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 348
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 349 NNAR 352
AR
Sbjct: 306 ELAR 309
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 236 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 289
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 193 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 252
Query: 290 GLMTSVLVCPDGKTIEA-EAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 348
GL+ S + G+ E HG+ G+ N A+I + + L H L
Sbjct: 253 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 303
Query: 349 NNAR 352
AR
Sbjct: 304 ELAR 307
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 177 GGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANW 236
G +A + + + IR S++ KK + + K+ ++ DG F++ + +
Sbjct: 168 GKMAFEIAKSRQKIRESGTYSIH----KKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDP 223
Query: 237 KSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSV 295
A I + +++D MV + + V N GD+ SD A GSLGL+ S
Sbjct: 224 SY----ASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSA 279
Query: 296 LVCPDGKTIEAEAAHGT 312
V + + +E HG+
Sbjct: 280 NVGDN--FVMSEPVHGS 294
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 18/172 (10%)
Query: 193 FAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLI 252
A+ +N A +++ + K +++ DG +F E + K K E Y +
Sbjct: 149 IAKVGLNFALRRRKKVTCVHKANVMRITDG----LFAEACRSVLKGKVE-----YSEMYV 199
Query: 253 DDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHG 311
D A +++ + V +N GD+ SD +Q GSLG+ S + D K + E HG
Sbjct: 200 DAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIG-DKKAL-FEPVHG 257
Query: 312 TVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAA 363
G+ N A + + S +L N+ R + + LE A
Sbjct: 258 A------AFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENA 303
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 249 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAE 307
H ID+ +K + V C N GD+ SD A GS+G++ S + G + E
Sbjct: 223 HMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGL-YE 281
Query: 308 AAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGT 367
A G+ G+ N IA I + + L R LD + D +E A
Sbjct: 282 PAGGSAP------DIAGKNIANPIAQILSLA--LLLRYSLDAD----DAACAIERAINRA 329
Query: 368 VESGKMTKDLA 378
+E G T DLA
Sbjct: 330 LEEGIRTGDLA 340
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 15/112 (13%)
Query: 267 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGET 326
V N GD+ SD A GSLGL+ S G E A G+ G+
Sbjct: 246 VILTTNMFGDILSDESAALPGSLGLLPSASF---GDKNLYEPAGGSAP------DIAGKN 296
Query: 327 STNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 378
N IA I + + L H + AR K+E A +E G T+D+A
Sbjct: 297 IANPIAQILSLAMMLEHSFGMVEEAR------KIERAVELVIEEGYRTRDIA 342
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 16/124 (12%)
Query: 236 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 289
W+ E G Y EH+ +D + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAAAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 290 GLMTSVLVCPDGKTIEA-EAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 348
GL+ S + G+ E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 349 NNAR 352
AR
Sbjct: 306 ELAR 309
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 78/207 (37%), Gaps = 46/207 (22%)
Query: 208 LYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA-YALKSEGGY 266
L+++ K +L G F D +EV + F + + ++D+ ++ E
Sbjct: 166 LHIAHKANVLPLTQGLFLDTVKEVAK-----DFPLVNV--QDIIVDNCATQLVMRPERYD 218
Query: 267 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGET 326
V N GD+ SD A G LGL P G + A V H G+
Sbjct: 219 VIVTTNLLGDILSDLAAGLMGGLGL------APSGNIGDTTAVFEPV--HGSAPDIAGKG 270
Query: 327 STNSIASIFAWSRGLAHRAKLDNNARLLDF------TEKLEAACIGTVESGKMTKDLALI 380
N A+I + A +LD+ +++E A +E G MT DL
Sbjct: 271 IANPTAAIL-------------SAAMMLDYLGEKEAAKRVEKAVDLVLERGPMTPDL--- 314
Query: 381 IHGSKMTREHYLNTEEFIDAVADDLRA 407
G T TE F +AV + L++
Sbjct: 315 --GGDAT------TEAFTEAVVEALKS 333
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 22/204 (10%)
Query: 175 GEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 234
GE V ++ T E I E + A ++ L K +L+ +++E+ E
Sbjct: 152 GENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLES-----SRMWREIAEE 206
Query: 235 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 293
K + + H L+D + + G + V +N GD+ SD + GSLG++
Sbjct: 207 TAKKYPD---VELSHMLVDSTAMQLIANPGQFDVIVTENMFGDILSDLASVITGSLGMLP 263
Query: 294 SVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARL 353
S + D + E HG+ G+ N + ++ + + L + L+ A
Sbjct: 264 SASLRSD-RFGMYEPVHGSAP------DIAGQGKANPLGTVLSAALMLRYSFGLEKEA-- 314
Query: 354 LDFTEKLEAACIGTVESGKMTKDL 377
+E A ++ G T DL
Sbjct: 315 ----AAIEKAVDDVLQDGYCTGDL 334
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 29/189 (15%)
Query: 210 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 259
L K I+K +G F+D + + + ++ G W + + ++ D +A A
Sbjct: 237 LVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFL 296
Query: 260 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 315
L+ V A N +GD SD LA G +G+ + EA HGT +
Sbjct: 297 QQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMF--EATHGTAPK 354
Query: 316 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 375
+ G+ N + I + L H + ++ EK +++ ++T
Sbjct: 355 Y------AGKDYVNPGSEILSAEMMLRHLGWTEAADVIISAMEK-------SIKQKRVTY 401
Query: 376 DLALIIHGS 384
D A ++ G+
Sbjct: 402 DFARLMEGA 410
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 22/207 (10%)
Query: 173 FTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVY 232
F GE +M ++ +R A + A ++ L K+ +L+ ++D+ +V
Sbjct: 158 FAGEREGFDTMRYSEPEVRRIAHVAFQAAQKRAKKLLSVDKSNVLETSQ-FWRDVMIDVS 216
Query: 233 EANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGL 291
+ E A + H +D+ K+ + V N GD+ SD + GS+G+
Sbjct: 217 K-------EYADVELSHMYVDNAAMQLAKAPKQFDVIVTGNMFGDILSDEASMLTGSIGM 269
Query: 292 MTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNA 351
+ S + + K + E +HG+ G+ N +A+I S + R L N A
Sbjct: 270 LPSASLDKNNKGLY-EPSHGSAP------DIAGKGIANPLATIL--SAAMLLRYSL-NRA 319
Query: 352 RLLDFTEKLEAACIGTVESGKMTKDLA 378
D ++E A +E G T D+A
Sbjct: 320 EQAD---RIERAVKTVLEQGYRTGDIA 343
>pdb|3TKN|A Chain A, Structure Of The Nup82-Nup159-Nup98 Heterotrimer
pdb|3TKN|D Chain D, Structure Of The Nup82-Nup159-Nup98 Heterotrimer
pdb|3TKN|G Chain G, Structure Of The Nup82-Nup159-Nup98 Heterotrimer
Length = 452
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 155 VFDVPEGKDEKTELEVYNF-TGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLS-- 211
V D+ + + K L +Y T EGG + Y S+ E +N K +Y S
Sbjct: 179 VNDITDLEFSKDGLTLYCLNTTEGGDIFAFYPFLPSVLLLNEKDLNLILNKSLVMYESLD 238
Query: 212 -TKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRL 251
T + I+K+ + +++E NW S+F I E+RL
Sbjct: 239 STTDVIVKRNVIKQLQFVSKLHE-NWNSRFGKVDIQKEYRL 278
>pdb|3S4W|A Chain A, Structure Of The Fanci-Fancd2 Complex
pdb|3S4Z|A Chain A, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|B Chain B, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|C Chain C, Structure Of A Y Dna-Fanci Complex
pdb|3S51|A Chain A, Structure Of Fanci
pdb|3S51|B Chain B, Structure Of Fanci
pdb|3S51|C Chain C, Structure Of Fanci
pdb|3S51|D Chain D, Structure Of Fanci
Length = 1308
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 359 KLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVAD 403
K+ + CI VESG + +D+A I G M H+ +D +D
Sbjct: 67 KIYSCCIQLVESGDLQQDVASEIIGLLMLEVHHFPGPLLVDLASD 111
>pdb|3IF0|X Chain X, Crystal Structure Of The Nanoarchaeum Equitans Trna
Splicing Endonuclease Structural Subunit
pdb|3IEY|B Chain B, Crystal Structure Of The Functional Nanoarchaeum Equitans
Trna Splicing Endonuclease
Length = 153
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 202 YQKKWPLYLSTKNTILKKYDGRFKDIFQEVYE 233
Y+ W +Y + K+ IL+ Y RF F E+YE
Sbjct: 57 YKNFWEIYYTVKDLILRGYRVRFDGFFIELYE 88
>pdb|4AVG|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 2
pdb|4AVG|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 2
pdb|4AVG|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 2
pdb|4AVG|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 2
pdb|4AVL|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Dtmp
pdb|4AVL|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Dtmp
pdb|4AVL|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Dtmp
pdb|4AVL|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Dtmp
pdb|4AVQ|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease
pdb|4AVQ|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease
pdb|4AVQ|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease
pdb|4AVQ|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease
pdb|4AWF|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With 2 4-Dioxo-4-Phenylbutanoic
Acid Dpba
pdb|4AWF|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With 2 4-Dioxo-4-Phenylbutanoic
Acid Dpba
pdb|4AWF|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With 2 4-Dioxo-4-Phenylbutanoic
Acid Dpba
pdb|4AWF|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With 2 4-Dioxo-4-Phenylbutanoic
Acid Dpba
pdb|4AWG|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 3
pdb|4AWG|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 3
pdb|4AWG|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 3
pdb|4AWG|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 3
pdb|4AWH|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Rump
pdb|4AWH|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Rump
pdb|4AWH|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Rump
pdb|4AWH|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Rump
Length = 204
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 162 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 204
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 145 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 187
>pdb|4AWK|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 1
Length = 183
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 162 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 204
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 124 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 166
>pdb|4AWM|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With (-)-Epigallocatechin
Gallate From Green Tea
Length = 192
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 162 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 204
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 133 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 175
>pdb|3HW3|A Chain A, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|B Chain B, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|C Chain C, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|D Chain D, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW5|A Chain A, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|B Chain B, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|C Chain C, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|D Chain D, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW6|A Chain A, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|B Chain B, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|C Chain C, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|D Chain D, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW4|A Chain A, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|B Chain B, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|C Chain C, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|D Chain D, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
Length = 261
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 162 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 204
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 144 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 186
>pdb|3EBJ|A Chain A, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|B Chain B, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|C Chain C, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|D Chain D, Crystal Structure Of An Avian Influenza Virus Protein
Length = 259
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 162 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 204
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 142 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 184
>pdb|3OR2|B Chain B, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
(Dsrii)
pdb|3OR2|E Chain E, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
(Dsrii)
Length = 385
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 205 KWPLYLSTKNTILKKY--DGR-FKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALK 261
+WP I++ Y D R ++ I ++ W++ +E G+ + H IDD +
Sbjct: 311 RWPTMAKIVKKIVEVYAEDARKYERIGDWIHRIGWETFYEKTGLEFSHHCIDD-----FR 365
Query: 262 SEGGYVW 268
Y W
Sbjct: 366 DPAYYTW 372
>pdb|3OR1|B Chain B, Crystal Structure Of Dissimilatory Sulfite Reductase I
(Dsri)
pdb|3OR1|E Chain E, Crystal Structure Of Dissimilatory Sulfite Reductase I
(Dsri)
Length = 386
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 205 KWPLYLSTKNTILKKY--DGR-FKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALK 261
+WP I++ Y D R ++ I ++ W++ +E G+ + H IDD +
Sbjct: 312 RWPTMAKIVKKIVEVYAEDARKYERIGDWIHRIGWETFYEKTGLEFSHHCIDD-----FR 366
Query: 262 SEGGYVW 268
Y W
Sbjct: 367 DPAYYTW 373
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 22/204 (10%)
Query: 175 GEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 234
GE V ++ T E I E + A ++ L K +L+ +++E+ E
Sbjct: 152 GENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLES-----SRMWREIAEE 206
Query: 235 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 293
K + + H L+D + + G + V +N GD+ SD + GSLG++
Sbjct: 207 TAKKYPD---VELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLP 263
Query: 294 SVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARL 353
S + D + E HG+ G+ N + ++ + + L + L+ A
Sbjct: 264 SASLRSD-RFGMYEPVHGSAP------DIAGQGKANPLGTVLSAALMLRYSFGLEKEA-- 314
Query: 354 LDFTEKLEAACIGTVESGKMTKDL 377
+E A ++ G T DL
Sbjct: 315 ----AAIEKAVDDVLQDGYCTGDL 334
>pdb|3PBP|A Chain A, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
pdb|3PBP|D Chain D, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
pdb|3PBP|G Chain G, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
pdb|3PBP|J Chain J, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
Length = 452
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 174 TGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLS---TKNTILKKYDGRFKDIFQE 230
T EGG + Y S+ E +N K Y S T + I+K+ + +
Sbjct: 199 TTEGGDIFAFYPFLPSVLLLNEKDLNLILNKSLVXYESLDSTTDVIVKRNVIKQLQFVSK 258
Query: 231 VYEANWKSKFEAAGIWYEHRL 251
++E NW S+F I E+RL
Sbjct: 259 LHE-NWNSRFGKVDIQKEYRL 278
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 22/204 (10%)
Query: 175 GEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 234
GE V ++ T E I E + A ++ L K +L+ +++E+ E
Sbjct: 152 GENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLES-----SRMWREIAEE 206
Query: 235 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 293
K + + H L+D + + G + V +N GD+ SD + GSLG++
Sbjct: 207 TAKKYPD---VELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLP 263
Query: 294 SVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARL 353
S + D + E HG+ G+ N + ++ + + L + L+ A
Sbjct: 264 SASLRSD-RFGMYEPVHGSAP------DIAGQGKANPLGTVLSAALMLRYSFGLEKEA-- 314
Query: 354 LDFTEKLEAACIGTVESGKMTKDL 377
+E A ++ G T DL
Sbjct: 315 ----AAIEKAVDDVLQDGYCTGDL 334
>pdb|3IS1|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In C2 Form At 2.45 Angstrom
Resolution
Length = 446
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 264 GGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHY 317
GGYVW KN DG VQ+D A G +T L+ P G I +T HY
Sbjct: 326 GGYVWFDKNNDG-VQNDSNAAAAG----ITVNLLDPTG--IRLATTTTDITGHY 372
>pdb|3IRP|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus At 1.50 Angstrom Resolution
pdb|3IRZ|A Chain A, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In P212121 Form
pdb|3IS0|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In The Presence Of
Cholesterol
Length = 429
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 264 GGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 318
GGYVW KN DG VQ+D A G +T L+ P G I +T HY
Sbjct: 309 GGYVWFDKNNDG-VQNDSNAAAAG----ITVNLLDPTG--IRLATTTTDITGHYN 356
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,623,164
Number of Sequences: 62578
Number of extensions: 533522
Number of successful extensions: 1264
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1201
Number of HSP's gapped (non-prelim): 90
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)