Query 015125
Match_columns 413
No_of_seqs 124 out of 1506
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:21:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02361 alpha-amylase 100.0 1E-80 2.2E-85 611.6 41.9 393 21-413 7-401 (401)
2 PLN00196 alpha-amylase; Provis 100.0 4.7E-78 1E-82 599.7 40.8 386 24-413 23-427 (428)
3 PLN02784 alpha-amylase 100.0 4.2E-72 9.2E-77 577.3 42.1 390 20-413 497-893 (894)
4 PRK09441 cytoplasmic alpha-amy 100.0 4.6E-67 1E-71 534.3 37.0 348 25-391 3-430 (479)
5 PRK10785 maltodextrin glucosid 100.0 1.6E-64 3.5E-69 525.9 27.9 324 40-391 176-560 (598)
6 PRK09505 malS alpha-amylase; R 100.0 2.2E-61 4.8E-66 501.7 31.6 348 15-388 181-680 (683)
7 TIGR02456 treS_nterm trehalose 100.0 3.1E-61 6.6E-66 497.4 30.8 365 26-408 6-516 (539)
8 TIGR02403 trehalose_treC alpha 100.0 9.4E-60 2E-64 485.6 29.1 347 26-392 5-502 (543)
9 PRK10933 trehalose-6-phosphate 100.0 6.3E-59 1.4E-63 478.8 32.4 363 26-406 11-528 (551)
10 TIGR02402 trehalose_TreZ malto 100.0 1.1E-55 2.3E-60 454.0 29.9 330 24-391 92-536 (542)
11 TIGR02104 pulA_typeI pullulana 100.0 7.8E-55 1.7E-59 454.7 26.3 364 21-407 123-600 (605)
12 PRK12313 glycogen branching en 100.0 5.1E-54 1.1E-58 451.1 32.1 353 24-407 146-585 (633)
13 TIGR01515 branching_enzym alph 100.0 1.5E-53 3.3E-58 444.8 31.3 353 26-407 139-572 (613)
14 PRK05402 glycogen branching en 100.0 5.1E-52 1.1E-56 441.0 32.3 354 25-407 241-681 (726)
15 PF00128 Alpha-amylase: Alpha 100.0 3.6E-54 7.9E-59 416.2 12.3 284 40-340 1-311 (316)
16 TIGR02100 glgX_debranch glycog 100.0 2.4E-51 5.2E-56 430.0 31.3 318 24-365 154-577 (688)
17 PRK14706 glycogen branching en 100.0 1E-50 2.2E-55 421.6 31.8 351 26-407 145-580 (639)
18 PRK03705 glycogen debranching 100.0 1.2E-50 2.7E-55 421.6 28.8 357 18-403 143-631 (658)
19 PRK12568 glycogen branching en 100.0 2.5E-48 5.4E-53 402.9 31.9 356 22-407 243-686 (730)
20 PRK14510 putative bifunctional 100.0 1.4E-48 3.1E-53 429.6 28.3 329 17-369 150-581 (1221)
21 PLN02960 alpha-amylase 100.0 3.1E-47 6.7E-52 395.1 32.4 348 26-407 396-847 (897)
22 TIGR02102 pullulan_Gpos pullul 100.0 4.8E-47 1E-51 408.4 33.0 345 22-391 448-948 (1111)
23 PRK14705 glycogen branching en 100.0 3.3E-47 7.2E-52 411.9 30.8 353 26-408 748-1181(1224)
24 PRK13840 sucrose phosphorylase 100.0 3.1E-46 6.6E-51 373.5 28.5 330 26-390 4-467 (495)
25 TIGR03852 sucrose_gtfA sucrose 100.0 2.3E-46 5.1E-51 372.1 25.5 331 26-391 2-462 (470)
26 PLN02447 1,4-alpha-glucan-bran 100.0 6.7E-44 1.5E-48 370.6 32.4 349 25-406 229-686 (758)
27 COG0366 AmyA Glycosidases [Car 100.0 5.4E-43 1.2E-47 360.9 21.0 352 27-389 2-482 (505)
28 TIGR02103 pullul_strch alpha-1 100.0 6.2E-42 1.3E-46 362.6 25.0 190 22-222 249-529 (898)
29 COG0296 GlgB 1,4-alpha-glucan 100.0 1.1E-40 2.3E-45 338.6 25.0 348 26-405 145-583 (628)
30 TIGR02455 TreS_stutzeri trehal 100.0 1.6E-39 3.5E-44 326.3 31.4 346 46-412 77-680 (688)
31 PLN02877 alpha-amylase/limit d 100.0 2.7E-40 5.9E-45 349.2 26.2 192 20-222 334-600 (970)
32 KOG0471 Alpha-amylase [Carbohy 100.0 5.6E-39 1.2E-43 329.5 24.0 365 19-389 13-502 (545)
33 COG1523 PulA Type II secretory 100.0 1.3E-39 2.8E-44 336.0 17.2 324 12-365 158-596 (697)
34 KOG2212 Alpha-amylase [Carbohy 100.0 9.5E-38 2.1E-42 287.9 23.3 360 18-407 21-465 (504)
35 TIGR02401 trehalose_TreY malto 100.0 6.6E-37 1.4E-41 319.7 30.6 185 36-222 9-287 (825)
36 PLN03244 alpha-amylase; Provis 100.0 1.5E-32 3.2E-37 280.8 28.4 322 26-407 401-822 (872)
37 PRK14511 maltooligosyl trehalo 100.0 4.6E-31 1E-35 277.0 28.2 84 37-120 14-99 (879)
38 KOG0470 1,4-alpha-glucan branc 100.0 6.4E-31 1.4E-35 265.0 16.5 168 18-199 222-408 (757)
39 smart00642 Aamy Alpha-amylase 99.9 2.3E-27 5E-32 207.8 10.3 92 26-117 1-97 (166)
40 PRK14507 putative bifunctional 99.9 2.9E-21 6.2E-26 214.8 18.3 82 36-117 751-834 (1693)
41 COG3280 TreY Maltooligosyl tre 99.8 4.6E-19 9.9E-24 179.1 14.2 96 41-138 17-125 (889)
42 TIGR01531 glyc_debranch glycog 99.8 1.9E-17 4.2E-22 179.4 24.4 81 40-120 129-215 (1464)
43 PF14872 GHL5: Hypothetical gl 99.3 3.6E-11 7.8E-16 120.6 16.1 153 18-198 172-393 (811)
44 PF02324 Glyco_hydro_70: Glyco 99.2 1E-09 2.3E-14 111.1 16.5 203 157-379 140-422 (809)
45 PF14701 hDGE_amylase: glucano 98.9 2.3E-09 5E-14 105.6 7.7 85 40-124 19-111 (423)
46 KOG3625 Alpha amylase [Carbohy 98.7 2.1E-06 4.6E-11 89.7 19.4 81 40-120 139-227 (1521)
47 PF02324 Glyco_hydro_70: Glyco 98.6 1.1E-07 2.5E-12 96.7 7.7 93 24-117 563-674 (809)
48 PF02638 DUF187: Glycosyl hydr 98.6 3.3E-07 7.1E-12 88.6 10.5 141 41-194 17-162 (311)
49 PF14871 GHL6: Hypothetical gl 98.5 1.3E-06 2.9E-11 73.3 11.3 127 46-194 3-132 (132)
50 PRK14508 4-alpha-glucanotransf 98.0 0.00041 8.9E-09 71.2 17.7 62 22-83 4-68 (497)
51 PF02065 Melibiase: Melibiase; 97.9 0.0015 3.2E-08 65.1 19.2 290 41-389 56-374 (394)
52 COG1649 Uncharacterized protei 97.8 8.1E-05 1.7E-09 73.6 9.4 140 41-195 62-208 (418)
53 PF07821 Alpha-amyl_C2: Alpha- 97.8 8.7E-05 1.9E-09 52.5 6.5 53 361-413 7-59 (59)
54 PLN02635 disproportionating en 97.8 0.00042 9.1E-09 71.4 14.3 60 22-81 27-93 (538)
55 PF11941 DUF3459: Domain of un 97.7 0.00016 3.5E-09 56.3 7.4 47 346-392 1-54 (89)
56 cd06597 GH31_transferase_CtsY 97.6 0.00084 1.8E-08 65.9 12.1 148 41-198 22-189 (340)
57 cd06593 GH31_xylosidase_YicI Y 97.5 0.00056 1.2E-08 66.3 9.5 139 40-200 21-163 (308)
58 cd06592 GH31_glucosidase_KIAA1 97.3 0.0024 5.3E-08 61.7 11.0 136 40-197 27-166 (303)
59 cd06594 GH31_glucosidase_YihQ 97.2 0.0042 9.1E-08 60.4 11.8 160 15-199 3-169 (317)
60 PF13199 Glyco_hydro_66: Glyco 97.1 0.0029 6.3E-08 65.5 10.7 157 30-196 105-268 (559)
61 smart00810 Alpha-amyl_C2 Alpha 97.1 0.0037 7.9E-08 44.7 7.9 51 361-413 7-61 (61)
62 PF13200 DUF4015: Putative gly 96.7 0.052 1.1E-06 52.4 14.6 132 41-196 11-147 (316)
63 PF14488 DUF4434: Domain of un 96.6 0.0088 1.9E-07 52.4 8.0 86 26-113 3-88 (166)
64 cd06599 GH31_glycosidase_Aec37 96.6 0.016 3.5E-07 56.4 10.6 138 42-197 28-169 (317)
65 cd06600 GH31_MGAM-like This fa 96.0 0.039 8.4E-07 53.7 9.3 155 15-197 3-161 (317)
66 PRK14582 pgaB outer membrane N 96.0 0.14 3.1E-06 54.4 14.0 148 23-194 311-466 (671)
67 PF01055 Glyco_hydro_31: Glyco 95.9 0.011 2.4E-07 60.2 5.2 156 15-198 22-182 (441)
68 cd06591 GH31_xylosidase_XylS X 95.6 0.03 6.5E-07 54.5 6.8 136 40-197 21-160 (319)
69 PF05913 DUF871: Bacterial pro 95.5 0.017 3.6E-07 56.9 4.7 61 38-113 9-70 (357)
70 COG3589 Uncharacterized conser 95.5 0.048 1E-06 52.2 7.2 68 27-112 4-71 (360)
71 PF00150 Cellulase: Cellulase 95.4 0.028 6E-07 53.1 5.6 80 23-113 4-85 (281)
72 PRK10426 alpha-glucosidase; Pr 94.9 0.12 2.5E-06 55.2 9.2 140 42-199 220-366 (635)
73 cd06604 GH31_glucosidase_II_Ma 94.8 0.15 3.2E-06 50.2 9.0 135 40-196 21-159 (339)
74 cd06602 GH31_MGAM_SI_GAA This 94.8 0.088 1.9E-06 51.7 7.3 142 41-198 22-167 (339)
75 PF02446 Glyco_hydro_77: 4-alp 94.7 0.029 6.3E-07 58.0 3.9 49 38-86 13-64 (496)
76 TIGR00217 malQ 4-alpha-glucano 94.6 0.14 3E-06 53.1 8.4 48 22-69 13-62 (513)
77 cd06542 GH18_EndoS-like Endo-b 94.5 0.19 4.2E-06 47.1 8.6 64 88-194 49-112 (255)
78 cd06598 GH31_transferase_CtsZ 94.2 0.13 2.8E-06 50.0 7.0 137 41-196 22-164 (317)
79 PRK10658 putative alpha-glucos 94.2 0.075 1.6E-06 56.8 5.6 137 41-199 281-421 (665)
80 COG3280 TreY Maltooligosyl tre 94.1 0.049 1.1E-06 57.2 4.0 61 158-218 268-331 (889)
81 PF07745 Glyco_hydro_53: Glyco 93.5 0.33 7.2E-06 47.3 8.3 52 46-110 27-78 (332)
82 cd06562 GH20_HexA_HexB-like Be 93.4 0.66 1.4E-05 45.7 10.4 126 41-186 16-149 (348)
83 KOG1065 Maltase glucoamylase a 93.4 0.89 1.9E-05 48.8 11.7 152 14-195 289-447 (805)
84 PRK11052 malQ 4-alpha-glucanot 93.3 0.22 4.8E-06 53.4 7.2 44 24-67 143-189 (695)
85 COG1640 MalQ 4-alpha-glucanotr 92.9 0.99 2.1E-05 46.5 10.8 47 23-69 12-62 (520)
86 cd06589 GH31 The enzymes of gl 92.8 0.63 1.4E-05 44.0 8.9 94 40-198 21-118 (265)
87 PLN02950 4-alpha-glucanotransf 92.5 0.31 6.6E-06 53.9 7.2 72 23-94 260-340 (909)
88 cd06595 GH31_xylosidase_XylS-l 92.2 0.38 8.3E-06 46.2 6.7 148 15-196 4-159 (292)
89 PLN03236 4-alpha-glucanotransf 92.0 0.32 7E-06 52.2 6.3 70 24-93 61-139 (745)
90 smart00632 Aamy_C Aamy_C domai 91.9 0.47 1E-05 36.1 5.6 35 371-405 7-49 (81)
91 cd06570 GH20_chitobiase-like_1 91.8 1.6 3.5E-05 42.3 10.5 124 41-185 16-146 (311)
92 cd06568 GH20_SpHex_like A subg 91.7 1.6 3.4E-05 42.7 10.4 126 41-186 16-154 (329)
93 PF02449 Glyco_hydro_42: Beta- 91.3 0.35 7.5E-06 48.2 5.5 123 42-195 9-137 (374)
94 cd06545 GH18_3CO4_chitinase Th 91.2 1.6 3.5E-05 40.8 9.6 81 89-212 45-130 (253)
95 cd06601 GH31_lyase_GLase GLase 91.2 0.73 1.6E-05 45.1 7.4 110 40-196 21-133 (332)
96 cd02875 GH18_chitobiase Chitob 90.9 0.6 1.3E-05 46.2 6.6 46 166-211 92-146 (358)
97 PRK11052 malQ 4-alpha-glucanot 90.7 0.55 1.2E-05 50.4 6.5 55 41-96 166-223 (695)
98 COG1501 Alpha-glucosidases, fa 90.6 0.67 1.4E-05 50.4 7.1 94 92-199 323-418 (772)
99 cd06569 GH20_Sm-chitobiase-lik 90.4 0.7 1.5E-05 47.1 6.8 77 41-117 20-125 (445)
100 PF02806 Alpha-amylase_C: Alph 89.8 0.77 1.7E-05 35.8 5.2 43 368-410 5-60 (95)
101 PLN02763 hydrolase, hydrolyzin 89.2 1.2 2.6E-05 49.4 7.7 133 41-195 199-335 (978)
102 PRK14510 putative bifunctional 89.0 0.68 1.5E-05 53.1 6.0 71 22-92 722-800 (1221)
103 cd02871 GH18_chitinase_D-like 88.8 2.1 4.5E-05 41.6 8.4 63 87-195 57-119 (312)
104 cd06563 GH20_chitobiase-like T 88.4 3.5 7.7E-05 40.8 10.0 126 42-185 17-164 (357)
105 PF03198 Glyco_hydro_72: Gluca 88.1 0.69 1.5E-05 44.3 4.4 57 41-118 51-107 (314)
106 PLN03236 4-alpha-glucanotransf 87.9 1 2.2E-05 48.4 6.1 29 90-119 274-302 (745)
107 cd06603 GH31_GANC_GANAB_alpha 87.6 1.2 2.5E-05 43.8 6.0 154 15-196 3-162 (339)
108 PF14701 hDGE_amylase: glucano 87.5 0.94 2E-05 45.4 5.2 53 157-211 360-417 (423)
109 cd06564 GH20_DspB_LnbB-like Gl 87.3 3.9 8.4E-05 39.9 9.4 122 41-186 15-155 (326)
110 PLN02950 4-alpha-glucanotransf 86.9 1.5 3.2E-05 48.7 6.8 29 90-119 461-489 (909)
111 TIGR03356 BGL beta-galactosida 86.6 4.1 8.8E-05 41.4 9.4 65 40-111 51-115 (427)
112 smart00812 Alpha_L_fucos Alpha 86.5 8 0.00017 38.7 11.2 119 46-199 84-206 (384)
113 PRK15447 putative protease; Pr 86.2 1.5 3.2E-05 42.4 5.7 57 32-108 10-66 (301)
114 PF01120 Alpha_L_fucos: Alpha- 85.2 6 0.00013 39.0 9.5 146 45-220 93-245 (346)
115 cd06565 GH20_GcnA-like Glycosy 83.8 3.5 7.6E-05 39.7 7.1 112 41-186 15-131 (301)
116 COG2342 Predicted extracellula 83.8 16 0.00034 34.5 10.8 125 33-198 26-151 (300)
117 TIGR01370 cysRS possible cyste 83.4 4.1 8.8E-05 39.5 7.2 40 157-197 132-171 (315)
118 PF10566 Glyco_hydro_97: Glyco 83.1 14 0.0003 35.1 10.5 105 41-203 30-136 (273)
119 cd02874 GH18_CFLE_spore_hydrol 82.9 8.4 0.00018 37.2 9.4 46 166-211 83-134 (313)
120 PF13380 CoA_binding_2: CoA bi 82.7 2.2 4.8E-05 34.8 4.5 43 42-108 65-107 (116)
121 PRK15452 putative protease; Pr 82.5 10 0.00022 38.6 10.1 48 49-108 16-64 (443)
122 PF10438 Cyc-maltodext_C: Cycl 82.3 2 4.4E-05 32.4 3.7 42 369-410 6-62 (78)
123 PRK10076 pyruvate formate lyas 81.9 4 8.6E-05 37.3 6.3 62 42-108 144-211 (213)
124 PF01301 Glyco_hydro_35: Glyco 81.6 1.2 2.5E-05 43.4 2.8 56 46-110 27-83 (319)
125 TIGR03849 arch_ComA phosphosul 81.4 4.2 9E-05 37.6 6.2 64 21-110 57-120 (237)
126 PF02446 Glyco_hydro_77: 4-alp 81.3 1.5 3.3E-05 45.4 3.7 47 174-222 268-337 (496)
127 COG3867 Arabinogalactan endo-1 80.3 4.9 0.00011 38.2 6.2 56 46-110 66-124 (403)
128 cd07944 DRE_TIM_HOA_like 4-hyd 80.1 25 0.00054 33.2 11.3 106 26-211 71-177 (266)
129 PRK13210 putative L-xylulose 5 79.8 22 0.00047 33.5 10.9 54 44-108 17-70 (284)
130 PF01373 Glyco_hydro_14: Glyco 79.6 2.6 5.6E-05 41.9 4.5 68 38-118 11-81 (402)
131 cd07937 DRE_TIM_PC_TC_5S Pyruv 79.5 30 0.00065 32.8 11.7 96 44-212 92-189 (275)
132 PRK14507 putative bifunctional 79.1 3 6.5E-05 49.0 5.4 69 24-92 172-248 (1693)
133 PF00728 Glyco_hydro_20: Glyco 78.7 2.3 4.9E-05 41.8 3.9 134 41-190 16-160 (351)
134 cd06546 GH18_CTS3_chitinase GH 78.6 22 0.00048 33.3 10.3 46 167-212 93-142 (256)
135 PRK08195 4-hyroxy-2-oxovalerat 78.6 27 0.00058 34.3 11.2 40 171-211 143-183 (337)
136 PF14883 GHL13: Hypothetical g 77.7 43 0.00094 31.9 11.7 124 43-192 17-142 (294)
137 cd02742 GH20_hexosaminidase Be 77.7 5.2 0.00011 38.6 5.9 122 41-185 14-147 (303)
138 PF02679 ComA: (2R)-phospho-3- 76.3 5.2 0.00011 37.2 5.2 64 21-110 70-133 (244)
139 PF07071 DUF1341: Protein of u 76.1 6.6 0.00014 35.1 5.5 44 45-106 137-180 (218)
140 PRK01060 endonuclease IV; Prov 75.9 5.3 0.00012 37.7 5.5 53 42-106 11-63 (281)
141 PLN03059 beta-galactosidase; P 74.8 6 0.00013 43.2 5.9 56 46-110 62-118 (840)
142 COG2730 BglC Endoglucanase [Ca 74.7 5.5 0.00012 40.2 5.4 60 44-110 74-136 (407)
143 cd07943 DRE_TIM_HOA 4-hydroxy- 74.7 37 0.00079 31.9 10.7 40 172-212 141-181 (263)
144 PF00724 Oxidored_FMN: NADH:fl 74.5 28 0.0006 34.2 10.2 73 43-120 36-108 (341)
145 PF08821 CGGC: CGGC domain; I 74.5 13 0.00027 30.0 6.4 54 42-108 51-104 (107)
146 smart00518 AP2Ec AP endonuclea 73.8 36 0.00079 31.8 10.6 53 44-108 11-63 (273)
147 PLN02803 beta-amylase 73.7 11 0.00025 38.6 7.2 65 41-118 105-172 (548)
148 cd00019 AP2Ec AP endonuclease 73.6 64 0.0014 30.3 12.3 52 45-108 12-64 (279)
149 PRK09852 cryptic 6-phospho-bet 73.0 15 0.00033 37.8 8.2 68 40-115 68-135 (474)
150 COG0041 PurE Phosphoribosylcar 71.1 13 0.00027 31.9 5.8 52 40-110 13-64 (162)
151 KOG0496 Beta-galactosidase [Ca 71.0 7.4 0.00016 40.9 5.3 57 47-111 53-109 (649)
152 TIGR00433 bioB biotin syntheta 70.4 9.8 0.00021 36.3 5.9 60 46-114 123-182 (296)
153 TIGR01210 conserved hypothetic 70.1 8.5 0.00018 37.3 5.4 61 46-114 117-179 (313)
154 PF13204 DUF4038: Protein of u 69.9 12 0.00026 35.9 6.2 70 41-114 28-110 (289)
155 PF11852 DUF3372: Domain of un 69.0 9.5 0.00021 33.3 4.8 49 343-391 43-115 (168)
156 PRK12928 lipoyl synthase; Prov 68.7 19 0.00041 34.5 7.3 78 18-110 201-278 (290)
157 PTZ00445 p36-lilke protein; Pr 68.6 11 0.00025 34.2 5.3 61 42-108 28-96 (219)
158 TIGR01233 lacG 6-phospho-beta- 68.4 27 0.00059 35.9 8.8 101 40-188 50-150 (467)
159 cd06547 GH85_ENGase Endo-beta- 68.3 8.1 0.00018 37.9 4.8 44 168-211 85-136 (339)
160 PRK15014 6-phospho-beta-glucos 68.3 25 0.00053 36.3 8.5 64 41-110 67-130 (477)
161 PLN02801 beta-amylase 67.8 17 0.00036 37.3 6.9 65 41-118 35-102 (517)
162 PRK09936 hypothetical protein; 67.3 17 0.00037 34.6 6.4 71 26-113 23-95 (296)
163 TIGR00542 hxl6Piso_put hexulos 67.2 11 0.00023 35.7 5.3 53 44-107 17-69 (279)
164 TIGR00539 hemN_rel putative ox 66.5 11 0.00025 37.2 5.5 64 46-117 100-164 (360)
165 TIGR03581 EF_0839 conserved hy 66.4 11 0.00024 34.2 4.8 44 44-105 136-179 (236)
166 PRK07094 biotin synthase; Prov 66.3 11 0.00023 36.6 5.3 36 81-117 157-192 (323)
167 PRK08208 coproporphyrinogen II 66.2 10 0.00023 38.4 5.3 63 47-117 142-205 (430)
168 PRK12858 tagatose 1,6-diphosph 65.2 9.1 0.0002 37.5 4.5 75 23-111 82-164 (340)
169 PLN02905 beta-amylase 65.0 20 0.00044 37.6 7.0 66 40-118 283-351 (702)
170 PRK05939 hypothetical protein; 64.9 15 0.00034 36.8 6.2 84 21-112 83-170 (397)
171 PLN02161 beta-amylase 64.6 23 0.00049 36.4 7.1 66 40-118 114-182 (531)
172 PRK08207 coproporphyrinogen II 64.2 15 0.00032 38.1 6.0 64 46-117 269-333 (488)
173 PRK10605 N-ethylmaleimide redu 64.1 78 0.0017 31.4 10.9 29 89-119 78-106 (362)
174 cd00598 GH18_chitinase-like Th 63.9 37 0.00081 30.2 8.1 47 166-212 84-139 (210)
175 PRK05628 coproporphyrinogen II 63.6 12 0.00026 37.2 5.1 33 85-117 139-172 (375)
176 PRK05967 cystathionine beta-ly 63.4 21 0.00045 35.9 6.7 85 21-113 100-189 (395)
177 PLN00197 beta-amylase; Provisi 62.6 25 0.00053 36.5 7.0 65 41-118 125-192 (573)
178 PF07488 Glyco_hydro_67M: Glyc 61.9 27 0.00058 33.5 6.6 68 31-110 45-112 (328)
179 PRK09856 fructoselysine 3-epim 61.8 19 0.0004 33.8 5.9 51 44-107 14-64 (275)
180 cd04733 OYE_like_2_FMN Old yel 61.5 50 0.0011 32.3 9.0 29 89-119 81-109 (338)
181 PRK13511 6-phospho-beta-galact 61.4 46 0.00099 34.3 9.0 66 40-114 51-116 (469)
182 PF01212 Beta_elim_lyase: Beta 61.2 8.1 0.00017 37.1 3.2 24 88-111 143-166 (290)
183 cd04824 eu_ALAD_PBGS_cysteine_ 60.9 30 0.00066 33.2 6.9 111 31-190 45-158 (320)
184 PLN02705 beta-amylase 60.1 26 0.00056 36.7 6.7 65 41-118 266-333 (681)
185 PRK05660 HemN family oxidoredu 60.1 17 0.00036 36.3 5.4 63 47-117 108-171 (378)
186 PRK06256 biotin synthase; Vali 59.8 14 0.00031 36.0 4.8 34 80-114 178-211 (336)
187 PRK09997 hydroxypyruvate isome 59.5 22 0.00047 33.2 5.8 21 45-65 17-37 (258)
188 PRK13384 delta-aminolevulinic 59.4 38 0.00082 32.6 7.2 120 42-210 60-181 (322)
189 cd06549 GH18_trifunctional GH1 58.6 21 0.00046 34.2 5.7 47 166-212 84-136 (298)
190 cd00408 DHDPS-like Dihydrodipi 58.1 35 0.00076 32.2 7.1 51 36-101 9-61 (281)
191 PRK13523 NADPH dehydrogenase N 58.1 1.3E+02 0.0028 29.5 11.1 75 39-118 32-107 (337)
192 PF01136 Peptidase_U32: Peptid 57.6 1.5E+02 0.0033 26.9 12.0 36 172-209 156-191 (233)
193 PLN02591 tryptophan synthase 57.5 31 0.00068 32.3 6.4 50 42-113 91-141 (250)
194 PRK05904 coproporphyrinogen II 57.5 19 0.00042 35.5 5.3 64 46-117 103-167 (353)
195 PRK01278 argD acetylornithine 57.4 38 0.00082 33.6 7.5 60 41-117 164-223 (389)
196 KOG2499 Beta-N-acetylhexosamin 57.2 60 0.0013 33.2 8.5 70 41-117 196-278 (542)
197 PRK13347 coproporphyrinogen II 57.1 19 0.00042 36.8 5.4 33 85-117 183-216 (453)
198 TIGR01211 ELP3 histone acetylt 57.0 18 0.00038 37.8 5.1 63 46-116 206-268 (522)
199 cd04724 Tryptophan_synthase_al 56.7 21 0.00045 33.2 5.1 48 44-113 92-139 (242)
200 cd07940 DRE_TIM_IPMS 2-isoprop 56.4 79 0.0017 29.7 9.1 41 171-212 142-183 (268)
201 PRK09593 arb 6-phospho-beta-gl 56.2 67 0.0014 33.2 9.1 65 40-110 70-134 (478)
202 TIGR03217 4OH_2_O_val_ald 4-hy 55.5 76 0.0016 31.1 9.0 39 172-211 143-182 (333)
203 PF09260 DUF1966: Domain of un 55.4 33 0.00072 26.7 5.2 43 368-410 2-61 (91)
204 TIGR03234 OH-pyruv-isom hydrox 55.4 32 0.0007 31.8 6.2 21 44-64 15-35 (254)
205 PRK08446 coproporphyrinogen II 55.2 23 0.0005 34.8 5.4 63 46-116 98-161 (350)
206 COG1306 Uncharacterized conser 55.0 34 0.00073 32.7 6.0 134 42-196 76-219 (400)
207 cd02932 OYE_YqiM_FMN Old yello 54.9 90 0.002 30.4 9.5 70 43-119 33-104 (336)
208 PRK09589 celA 6-phospho-beta-g 54.7 64 0.0014 33.3 8.7 67 40-114 64-130 (476)
209 cd00950 DHDPS Dihydrodipicolin 54.6 41 0.00088 31.9 6.9 29 36-64 12-42 (284)
210 cd02803 OYE_like_FMN_family Ol 54.5 26 0.00056 33.9 5.6 67 48-119 38-104 (327)
211 TIGR00538 hemN oxygen-independ 54.3 23 0.00051 36.2 5.5 63 47-117 152-215 (455)
212 PRK09249 coproporphyrinogen II 54.3 26 0.00056 35.8 5.8 63 47-117 152-215 (453)
213 TIGR03471 HpnJ hopanoid biosyn 53.5 28 0.00061 35.8 5.9 27 88-114 321-347 (472)
214 cd02929 TMADH_HD_FMN Trimethyl 53.3 1.8E+02 0.0038 28.9 11.3 29 89-119 82-110 (370)
215 cd03174 DRE_TIM_metallolyase D 53.1 68 0.0015 29.7 8.1 40 171-211 145-185 (265)
216 KOG2730 Methylase [General fun 53.0 13 0.00029 33.9 2.9 46 40-86 150-195 (263)
217 cd00384 ALAD_PBGS Porphobilino 52.7 65 0.0014 31.0 7.6 103 42-190 50-154 (314)
218 cd07939 DRE_TIM_NifV Streptomy 52.6 1E+02 0.0023 28.7 9.2 40 172-212 139-179 (259)
219 cd04734 OYE_like_3_FMN Old yel 52.1 1.7E+02 0.0036 28.8 10.9 74 38-119 27-104 (343)
220 cd00609 AAT_like Aspartate ami 51.8 22 0.00048 34.0 4.7 27 88-114 150-176 (350)
221 COG1874 LacA Beta-galactosidas 51.8 69 0.0015 34.4 8.5 76 20-112 8-90 (673)
222 PLN02389 biotin synthase 51.7 41 0.00088 33.6 6.5 72 41-114 151-237 (379)
223 cd08560 GDPD_EcGlpQ_like_1 Gly 51.6 18 0.00039 35.8 3.9 18 91-108 279-296 (356)
224 cd02931 ER_like_FMN Enoate red 51.5 1.9E+02 0.0041 28.9 11.3 28 89-118 82-110 (382)
225 PF07555 NAGidase: beta-N-acet 50.5 1.2E+02 0.0025 29.4 9.2 101 42-196 14-116 (306)
226 TIGR00510 lipA lipoate synthas 50.4 75 0.0016 30.6 7.9 76 19-109 205-280 (302)
227 COG1168 MalY Bifunctional PLP- 49.7 18 0.00039 35.7 3.5 23 88-110 176-198 (388)
228 cd02879 GH18_plant_chitinase_c 49.5 34 0.00074 32.8 5.5 46 166-211 88-140 (299)
229 cd05014 SIS_Kpsf KpsF-like pro 48.9 32 0.00069 27.9 4.6 58 51-108 21-79 (128)
230 cd00945 Aldolase_Class_I Class 48.9 45 0.00098 29.1 5.9 60 41-115 63-125 (201)
231 PRK13209 L-xylulose 5-phosphat 48.8 37 0.0008 32.0 5.6 53 45-108 23-75 (283)
232 COG0826 Collagenase and relate 48.7 49 0.0011 32.6 6.4 52 48-110 18-69 (347)
233 PRK05093 argD bifunctional N-s 48.4 54 0.0012 32.7 7.0 61 41-118 173-233 (403)
234 TIGR00262 trpA tryptophan synt 48.2 53 0.0012 30.8 6.4 48 44-113 103-150 (256)
235 PRK08599 coproporphyrinogen II 48.2 34 0.00074 34.0 5.4 33 85-117 131-164 (377)
236 cd04740 DHOD_1B_like Dihydroor 48.0 1E+02 0.0022 29.3 8.6 74 24-113 89-164 (296)
237 PRK13125 trpA tryptophan synth 47.8 49 0.0011 30.7 6.1 51 44-113 89-139 (244)
238 TIGR00674 dapA dihydrodipicoli 47.4 64 0.0014 30.6 7.0 51 36-101 10-62 (285)
239 COG3345 GalA Alpha-galactosida 47.4 66 0.0014 33.5 7.1 156 18-193 285-441 (687)
240 PF00232 Glyco_hydro_1: Glycos 47.3 27 0.00058 35.8 4.6 94 40-186 55-155 (455)
241 COG0520 csdA Selenocysteine ly 47.1 19 0.00041 36.3 3.4 58 53-111 133-200 (405)
242 PLN02814 beta-glucosidase 47.0 82 0.0018 32.8 8.1 67 40-115 74-140 (504)
243 cd04735 OYE_like_4_FMN Old yel 46.7 1.1E+02 0.0024 30.1 8.7 29 89-119 77-105 (353)
244 cd04823 ALAD_PBGS_aspartate_ri 46.5 82 0.0018 30.4 7.3 117 42-210 53-176 (320)
245 PRK13111 trpA tryptophan synth 46.5 57 0.0012 30.7 6.3 50 42-113 102-152 (258)
246 PRK07379 coproporphyrinogen II 46.2 31 0.00067 34.7 4.8 63 47-117 116-179 (400)
247 PF00704 Glyco_hydro_18: Glyco 46.1 37 0.0008 32.8 5.3 45 167-211 96-150 (343)
248 cd00287 ribokinase_pfkB_like r 46.0 32 0.0007 29.9 4.5 53 48-113 42-94 (196)
249 PF13407 Peripla_BP_4: Peripla 46.0 20 0.00044 32.8 3.2 49 38-108 37-85 (257)
250 TIGR03249 KdgD 5-dehydro-4-deo 45.9 55 0.0012 31.3 6.3 52 35-101 16-69 (296)
251 PLN02849 beta-glucosidase 45.8 84 0.0018 32.7 7.9 67 40-115 76-142 (503)
252 cd00951 KDGDH 5-dehydro-4-deox 45.7 69 0.0015 30.5 6.9 29 36-64 12-42 (289)
253 TIGR01108 oadA oxaloacetate de 45.4 3.4E+02 0.0074 28.9 12.5 40 171-211 148-188 (582)
254 PRK12595 bifunctional 3-deoxy- 45.4 77 0.0017 31.4 7.3 60 41-110 130-189 (360)
255 PLN02747 N-carbamolyputrescine 45.3 1.3E+02 0.0028 28.6 8.8 68 39-110 21-92 (296)
256 COG3661 AguA Alpha-glucuronida 45.3 64 0.0014 32.5 6.5 63 41-112 181-243 (684)
257 PRK06294 coproporphyrinogen II 45.0 38 0.00082 33.6 5.2 64 46-117 103-167 (370)
258 cd02877 GH18_hevamine_XipI_cla 44.9 2.3E+02 0.005 26.9 10.2 57 53-110 21-79 (280)
259 PRK00854 rocD ornithine--oxo-a 44.8 68 0.0015 31.9 7.1 60 41-117 176-235 (401)
260 PF00701 DHDPS: Dihydrodipicol 44.8 65 0.0014 30.6 6.6 57 37-108 14-75 (289)
261 COG1242 Predicted Fe-S oxidore 44.7 99 0.0021 29.4 7.3 53 89-194 167-219 (312)
262 PRK03170 dihydrodipicolinate s 44.5 72 0.0016 30.4 6.8 29 36-64 13-43 (292)
263 PRK05799 coproporphyrinogen II 44.5 36 0.00078 33.7 4.9 63 47-117 100-163 (374)
264 PF15640 Tox-MPTase4: Metallop 44.4 23 0.0005 29.1 2.8 27 83-109 15-41 (132)
265 cd07945 DRE_TIM_CMS Leptospira 44.3 1.9E+02 0.0041 27.5 9.6 39 172-211 147-186 (280)
266 PF01791 DeoC: DeoC/LacD famil 44.3 20 0.00044 33.0 2.9 26 89-114 111-136 (236)
267 cd07938 DRE_TIM_HMGL 3-hydroxy 44.1 1.2E+02 0.0027 28.6 8.3 40 171-211 148-188 (274)
268 cd03322 rpsA The starvation se 44.0 83 0.0018 31.0 7.4 79 23-108 162-270 (361)
269 smart00733 Mterf Mitochondrial 43.9 17 0.00036 20.9 1.6 17 42-58 15-31 (31)
270 COG2200 Rtn c-di-GMP phosphodi 43.8 36 0.00077 31.9 4.5 80 26-113 121-216 (256)
271 PF01261 AP_endonuc_2: Xylose 43.7 8.7 0.00019 34.0 0.3 44 49-107 1-44 (213)
272 cd01335 Radical_SAM Radical SA 43.6 32 0.0007 29.6 4.0 63 46-115 88-150 (204)
273 PF02581 TMP-TENI: Thiamine mo 43.4 33 0.00071 30.1 4.0 42 49-100 108-149 (180)
274 PRK05481 lipoyl synthase; Prov 43.3 94 0.002 29.7 7.4 79 19-112 194-272 (289)
275 PRK12581 oxaloacetate decarbox 43.2 1.3E+02 0.0029 30.9 8.7 41 170-211 161-202 (468)
276 cd03320 OSBS o-Succinylbenzoat 42.9 62 0.0014 30.3 6.1 80 23-109 126-233 (263)
277 PRK05692 hydroxymethylglutaryl 42.6 1.4E+02 0.003 28.6 8.4 74 90-211 120-194 (287)
278 PF09081 DUF1921: Domain of un 42.4 1E+02 0.0023 20.7 5.3 40 373-412 5-51 (51)
279 PRK13398 3-deoxy-7-phosphohept 42.0 89 0.0019 29.5 6.9 60 41-110 39-98 (266)
280 TIGR02006 IscS cysteine desulf 41.8 56 0.0012 32.6 5.9 71 41-112 101-181 (402)
281 COG1082 IolE Sugar phosphate i 41.7 50 0.0011 30.6 5.3 50 42-108 14-63 (274)
282 PRK03170 dihydrodipicolinate s 41.7 77 0.0017 30.2 6.6 35 26-66 72-106 (292)
283 PRK00915 2-isopropylmalate syn 41.7 2.3E+02 0.0051 29.5 10.5 114 26-210 67-187 (513)
284 COG0134 TrpC Indole-3-glycerol 41.4 33 0.00071 32.1 3.8 22 89-110 142-163 (254)
285 PLN02998 beta-glucosidase 41.4 95 0.0021 32.2 7.5 62 40-114 79-144 (497)
286 PF09445 Methyltransf_15: RNA 41.3 45 0.00099 29.0 4.4 67 41-113 56-122 (163)
287 TIGR02666 moaA molybdenum cofa 41.3 66 0.0014 31.3 6.1 60 46-112 102-162 (334)
288 PF00266 Aminotran_5: Aminotra 41.1 38 0.00081 33.3 4.5 70 42-111 98-177 (371)
289 PRK06582 coproporphyrinogen II 41.0 49 0.0011 33.2 5.2 64 46-117 111-174 (390)
290 PRK09989 hypothetical protein; 40.9 58 0.0013 30.2 5.5 42 44-107 16-57 (258)
291 PRK14017 galactonate dehydrata 40.7 1.3E+02 0.0029 29.9 8.3 79 23-108 176-284 (382)
292 TIGR00217 malQ 4-alpha-glucano 40.7 47 0.001 34.6 5.2 38 185-222 303-363 (513)
293 COG2873 MET17 O-acetylhomoseri 40.5 26 0.00057 34.6 3.1 70 44-113 113-187 (426)
294 PF00490 ALAD: Delta-aminolevu 40.3 49 0.0011 32.0 4.8 106 42-191 56-165 (324)
295 TIGR03586 PseI pseudaminic aci 40.2 72 0.0016 31.2 6.1 112 40-214 14-138 (327)
296 cd00954 NAL N-Acetylneuraminic 40.0 87 0.0019 29.8 6.6 60 26-108 72-133 (288)
297 PRK04302 triosephosphate isome 39.7 55 0.0012 29.9 5.0 64 26-110 58-121 (223)
298 PRK03620 5-dehydro-4-deoxygluc 39.6 75 0.0016 30.6 6.1 59 35-108 18-81 (303)
299 PRK14457 ribosomal RNA large s 39.5 1.1E+02 0.0023 30.2 7.2 74 22-108 251-324 (345)
300 PRK04147 N-acetylneuraminate l 39.5 70 0.0015 30.5 5.9 30 35-64 14-46 (293)
301 KOG0259 Tyrosine aminotransfer 39.4 60 0.0013 32.3 5.2 79 40-119 134-248 (447)
302 cd04795 SIS SIS domain. SIS (S 39.3 33 0.00071 25.5 3.0 57 52-108 20-79 (87)
303 PRK09028 cystathionine beta-ly 39.3 40 0.00087 33.8 4.3 30 84-113 157-186 (394)
304 PRK11145 pflA pyruvate formate 39.3 91 0.002 28.7 6.5 63 44-107 180-245 (246)
305 PRK11059 regulatory protein Cs 39.2 36 0.00078 36.4 4.2 86 26-114 518-614 (640)
306 cd02876 GH18_SI-CLP Stabilin-1 39.1 35 0.00076 33.0 3.8 46 166-211 88-144 (318)
307 PF09196 DUF1953: Domain of un 39.1 56 0.0012 22.8 3.6 43 365-407 2-50 (66)
308 TIGR02313 HpaI-NOT-DapA 2,4-di 39.1 1.1E+02 0.0024 29.2 7.2 30 35-64 11-42 (294)
309 PRK14012 cysteine desulfurase; 39.0 87 0.0019 31.2 6.8 71 42-112 104-183 (404)
310 PLN02651 cysteine desulfurase 39.0 68 0.0015 31.4 5.9 68 44-112 100-177 (364)
311 PF00155 Aminotran_1_2: Aminot 38.9 56 0.0012 31.7 5.3 66 40-119 130-197 (363)
312 PLN02746 hydroxymethylglutaryl 38.8 2.3E+02 0.005 27.9 9.4 40 171-211 196-236 (347)
313 PLN02417 dihydrodipicolinate s 38.7 74 0.0016 30.2 5.9 58 36-108 13-75 (280)
314 PRK08114 cystathionine beta-ly 38.6 53 0.0012 33.0 5.1 84 21-112 98-188 (395)
315 PRK14455 ribosomal RNA large s 38.5 90 0.002 30.9 6.6 73 23-108 259-331 (356)
316 PF00682 HMGL-like: HMGL-like 38.5 1.8E+02 0.0038 26.6 8.3 39 172-211 137-176 (237)
317 PRK09856 fructoselysine 3-epim 38.4 1.2E+02 0.0025 28.3 7.2 61 41-110 88-149 (275)
318 PRK05942 aspartate aminotransf 38.4 80 0.0017 31.3 6.4 29 88-116 188-216 (394)
319 TIGR00674 dapA dihydrodipicoli 38.4 95 0.0021 29.4 6.6 36 25-66 68-103 (285)
320 cd00615 Orn_deC_like Ornithine 38.3 23 0.00049 33.8 2.3 26 86-111 166-191 (294)
321 COG1441 MenC O-succinylbenzoat 38.0 41 0.00088 30.9 3.6 37 54-109 227-263 (321)
322 COG1640 MalQ 4-alpha-glucanotr 37.7 79 0.0017 32.9 6.1 24 288-311 393-416 (520)
323 TIGR02026 BchE magnesium-proto 37.6 56 0.0012 33.9 5.2 60 47-114 288-347 (497)
324 cd06548 GH18_chitinase The GH1 37.3 41 0.00088 32.6 3.9 30 166-195 105-134 (322)
325 COG2179 Predicted hydrolase of 37.2 71 0.0015 27.9 4.9 49 48-108 19-67 (175)
326 COG1809 (2R)-phospho-3-sulfola 37.1 69 0.0015 29.3 4.9 49 44-110 91-139 (258)
327 PLN02428 lipoic acid synthase 37.0 1.4E+02 0.0031 29.4 7.6 62 41-110 260-321 (349)
328 cd04722 TIM_phosphate_binding 36.9 1.5E+02 0.0033 25.3 7.4 67 24-114 57-125 (200)
329 TIGR03551 F420_cofH 7,8-dideme 36.8 42 0.0009 32.9 4.0 64 46-115 141-204 (343)
330 smart00729 Elp3 Elongator prot 36.8 69 0.0015 27.9 5.2 62 46-115 100-162 (216)
331 PRK09283 delta-aminolevulinic 36.7 1.4E+02 0.0031 28.9 7.3 103 42-190 58-162 (323)
332 TIGR03699 mena_SCO4550 menaqui 36.7 43 0.00093 32.7 4.0 31 84-114 175-205 (340)
333 cd05008 SIS_GlmS_GlmD_1 SIS (S 36.7 52 0.0011 26.5 4.0 59 49-108 18-78 (126)
334 PRK13361 molybdenum cofactor b 36.6 76 0.0017 30.8 5.7 61 45-113 103-164 (329)
335 PRK14040 oxaloacetate decarbox 36.5 5.4E+02 0.012 27.4 12.3 40 171-211 154-194 (593)
336 cd07941 DRE_TIM_LeuA3 Desulfob 36.4 2.4E+02 0.0052 26.6 9.0 40 172-212 151-191 (273)
337 PRK09057 coproporphyrinogen II 36.4 52 0.0011 32.8 4.6 63 47-117 105-167 (380)
338 cd01299 Met_dep_hydrolase_A Me 36.2 1.4E+02 0.003 28.8 7.6 63 41-110 118-180 (342)
339 TIGR01324 cysta_beta_ly_B cyst 36.0 49 0.0011 32.9 4.4 31 83-113 145-175 (377)
340 COG1902 NemA NADH:flavin oxido 36.0 3.3E+02 0.0071 27.0 10.0 28 89-118 82-109 (363)
341 PF15632 ATPgrasp_Ter: ATP-gra 35.8 47 0.001 32.5 4.0 64 42-108 8-71 (329)
342 PRK13561 putative diguanylate 35.6 56 0.0012 34.9 5.0 67 41-113 532-614 (651)
343 cd07948 DRE_TIM_HCS Saccharomy 35.6 2.8E+02 0.0062 26.0 9.2 40 172-212 141-181 (262)
344 cd00952 CHBPH_aldolase Trans-o 35.5 1.5E+02 0.0032 28.7 7.4 36 25-66 78-113 (309)
345 TIGR03620 F420_MSMEG_4141 prob 35.4 46 0.00099 31.7 3.8 43 40-97 234-276 (278)
346 COG0113 HemB Delta-aminolevuli 35.3 1.3E+02 0.0029 28.9 6.7 66 30-113 54-126 (330)
347 TIGR00683 nanA N-acetylneurami 35.2 1.2E+02 0.0027 28.9 6.8 51 36-101 12-65 (290)
348 PRK14453 chloramphenicol/florf 35.1 1.4E+02 0.003 29.4 7.3 75 24-108 246-324 (347)
349 TIGR00262 trpA tryptophan synt 35.0 3.8E+02 0.0083 25.0 9.9 73 38-111 19-95 (256)
350 TIGR03127 RuMP_HxlB 6-phospho 34.8 77 0.0017 27.6 5.0 55 50-108 50-104 (179)
351 KOG4175 Tryptophan synthase al 34.7 71 0.0015 28.8 4.5 64 40-111 77-156 (268)
352 smart00636 Glyco_18 Glycosyl h 34.6 47 0.001 32.2 3.9 46 166-211 87-140 (334)
353 cd00954 NAL N-Acetylneuraminic 34.5 1.6E+02 0.0034 28.0 7.4 29 36-64 12-43 (288)
354 cd04747 OYE_like_5_FMN Old yel 34.5 2.6E+02 0.0057 27.7 9.1 72 43-119 33-105 (361)
355 PRK09058 coproporphyrinogen II 34.5 1.2E+02 0.0027 30.9 7.1 64 46-117 163-227 (449)
356 PRK00164 moaA molybdenum cofac 34.5 94 0.002 30.1 6.0 61 45-113 107-168 (331)
357 cd06543 GH18_PF-ChiA-like PF-C 34.4 1.5E+02 0.0033 28.4 7.3 94 50-197 19-115 (294)
358 cd03315 MLE_like Muconate lact 34.4 60 0.0013 30.3 4.5 77 26-109 131-237 (265)
359 COG0329 DapA Dihydrodipicolina 34.0 1.1E+02 0.0023 29.5 6.2 51 36-101 16-68 (299)
360 PF00289 CPSase_L_chain: Carba 34.0 31 0.00067 27.8 2.1 63 45-107 14-103 (110)
361 PRK00278 trpC indole-3-glycero 33.9 50 0.0011 31.0 3.8 23 88-110 145-167 (260)
362 TIGR01162 purE phosphoribosyla 33.9 86 0.0019 27.1 4.9 52 40-110 9-60 (156)
363 PF01261 AP_endonuc_2: Xylose 33.8 1.2E+02 0.0026 26.4 6.2 56 42-110 70-132 (213)
364 cd03409 Chelatase_Class_II Cla 33.7 35 0.00076 26.4 2.4 27 43-69 45-71 (101)
365 cd00408 DHDPS-like Dihydrodipi 33.5 1.3E+02 0.0028 28.3 6.7 35 26-66 68-102 (281)
366 COG0436 Aspartate/tyrosine/aro 33.4 47 0.001 33.3 3.8 32 88-119 181-212 (393)
367 COG1891 Uncharacterized protei 33.3 19 0.00042 31.5 0.8 23 88-110 165-187 (235)
368 cd06450 DOPA_deC_like DOPA dec 33.2 61 0.0013 31.2 4.5 32 83-114 158-189 (345)
369 cd00950 DHDPS Dihydrodipicolin 33.2 1.2E+02 0.0025 28.7 6.3 35 26-66 71-105 (284)
370 PF04914 DltD_C: DltD C-termin 33.1 49 0.0011 27.6 3.2 55 90-187 36-90 (130)
371 TIGR01140 L_thr_O3P_dcar L-thr 33.0 44 0.00096 32.3 3.4 29 88-116 143-171 (330)
372 PF00834 Ribul_P_3_epim: Ribul 32.9 78 0.0017 28.5 4.8 77 31-113 85-176 (201)
373 TIGR02494 PFLE_PFLC glycyl-rad 32.9 1.3E+02 0.0027 28.6 6.5 57 42-103 231-295 (295)
374 PRK07050 cystathionine beta-ly 32.9 58 0.0012 32.6 4.3 30 85-114 162-191 (394)
375 cd00953 KDG_aldolase KDG (2-ke 32.6 1.7E+02 0.0038 27.6 7.4 60 26-108 67-126 (279)
376 TIGR01212 radical SAM protein, 32.6 78 0.0017 30.4 5.0 27 88-114 161-187 (302)
377 TIGR01814 kynureninase kynuren 32.6 37 0.00079 34.0 2.9 32 80-111 178-209 (406)
378 PRK09331 Sep-tRNA:Cys-tRNA syn 32.5 45 0.00097 33.1 3.5 33 81-113 166-198 (387)
379 PRK12677 xylose isomerase; Pro 32.5 1.1E+02 0.0023 30.7 6.1 54 44-108 32-85 (384)
380 TIGR01232 lacD tagatose 1,6-di 32.2 60 0.0013 31.5 4.0 50 50-113 113-166 (325)
381 cd00564 TMP_TenI Thiamine mono 32.2 1.3E+02 0.0029 26.0 6.2 50 48-110 107-157 (196)
382 COG1533 SplB DNA repair photol 32.2 98 0.0021 29.8 5.5 59 41-117 167-226 (297)
383 PRK10060 RNase II stability mo 32.2 49 0.0011 35.6 3.9 68 41-114 539-622 (663)
384 TIGR03470 HpnH hopanoid biosyn 32.0 1.7E+02 0.0036 28.3 7.3 52 41-101 176-227 (318)
385 PRK07259 dihydroorotate dehydr 32.0 2.5E+02 0.0054 26.8 8.4 73 24-112 91-166 (301)
386 cd06452 SepCysS Sep-tRNA:Cys-t 31.9 39 0.00084 33.1 2.9 31 83-113 149-179 (361)
387 cd00953 KDG_aldolase KDG (2-ke 31.9 1.4E+02 0.0031 28.2 6.7 47 41-102 18-64 (279)
388 TIGR02660 nifV_homocitr homoci 31.8 3E+02 0.0065 27.2 9.1 40 171-211 141-181 (365)
389 PLN00145 tyrosine/nicotianamin 31.8 57 0.0012 33.0 4.1 30 88-117 208-237 (430)
390 PTZ00125 ornithine aminotransf 31.8 1.3E+02 0.0029 29.7 6.8 61 41-117 166-226 (400)
391 PRK05968 hypothetical protein; 31.7 63 0.0014 32.3 4.4 62 51-112 122-186 (389)
392 PTZ00413 lipoate synthase; Pro 31.6 1.5E+02 0.0033 29.6 6.8 62 41-110 308-369 (398)
393 PRK11194 ribosomal RNA large s 31.5 1.7E+02 0.0036 29.2 7.2 56 41-108 276-331 (372)
394 TIGR03569 NeuB_NnaB N-acetylne 31.3 1.2E+02 0.0026 29.6 6.1 113 40-215 13-138 (329)
395 cd02803 OYE_like_FMN_family Ol 31.2 1.8E+02 0.0038 28.1 7.3 61 47-113 145-218 (327)
396 COG1105 FruK Fructose-1-phosph 31.2 65 0.0014 31.2 4.1 23 88-110 144-166 (310)
397 cd02872 GH18_chitolectin_chito 31.1 54 0.0012 32.3 3.7 46 166-211 92-148 (362)
398 cd06454 KBL_like KBL_like; thi 31.1 43 0.00093 32.3 3.0 27 86-112 145-171 (349)
399 cd00308 enolase_like Enolase-s 31.1 1.1E+02 0.0024 27.8 5.6 76 26-108 96-201 (229)
400 COG2876 AroA 3-deoxy-D-arabino 31.0 1.9E+02 0.004 27.4 6.8 70 32-111 48-117 (286)
401 PRK08898 coproporphyrinogen II 31.0 70 0.0015 32.1 4.5 63 47-117 123-185 (394)
402 COG0159 TrpA Tryptophan syntha 31.0 78 0.0017 29.9 4.5 76 37-116 25-137 (265)
403 COG0320 LipA Lipoate synthase 30.9 1.5E+02 0.0033 28.1 6.3 73 18-105 210-282 (306)
404 cd00614 CGS_like CGS_like: Cys 30.8 43 0.00094 33.0 3.0 28 85-112 137-164 (369)
405 PF01276 OKR_DC_1: Orn/Lys/Arg 30.8 18 0.00039 36.5 0.3 27 84-110 178-204 (417)
406 TIGR00423 radical SAM domain p 30.8 72 0.0016 30.7 4.5 32 84-115 139-170 (309)
407 cd00951 KDGDH 5-dehydro-4-deox 30.7 1.6E+02 0.0035 28.0 6.8 35 25-66 70-104 (289)
408 cd06502 TA_like Low-specificit 30.5 48 0.001 31.8 3.2 24 88-111 144-167 (338)
409 PRK13238 tnaA tryptophanase/L- 30.5 66 0.0014 33.0 4.3 23 88-110 196-218 (460)
410 PRK08960 hypothetical protein; 30.5 58 0.0013 32.2 3.9 27 89-115 184-210 (387)
411 PRK08247 cystathionine gamma-s 30.4 69 0.0015 31.6 4.4 27 86-112 149-175 (366)
412 cd05017 SIS_PGI_PMI_1 The memb 30.3 54 0.0012 26.4 3.0 55 51-108 20-75 (119)
413 PRK04147 N-acetylneuraminate l 30.2 1.5E+02 0.0033 28.1 6.6 35 26-66 75-109 (293)
414 PLN02509 cystathionine beta-ly 30.2 69 0.0015 32.9 4.4 31 82-112 226-256 (464)
415 cd06544 GH18_narbonin Narbonin 30.2 91 0.002 29.2 4.9 44 169-212 96-144 (253)
416 cd02878 GH18_zymocin_alpha Zym 30.1 57 0.0012 32.0 3.7 29 167-195 88-116 (345)
417 PF03711 OKR_DC_1_C: Orn/Lys/A 30.1 41 0.00089 28.3 2.3 40 322-361 82-123 (136)
418 TIGR02631 xylA_Arthro xylose i 30.1 1.2E+02 0.0025 30.4 5.9 52 45-108 34-86 (382)
419 PRK13397 3-deoxy-7-phosphohept 30.1 2.4E+02 0.0052 26.4 7.5 59 41-110 27-86 (250)
420 TIGR03128 RuMP_HxlA 3-hexulose 30.0 1.1E+02 0.0023 27.3 5.3 21 90-110 89-109 (206)
421 PRK07324 transaminase; Validat 29.6 68 0.0015 31.6 4.2 28 88-115 171-198 (373)
422 cd01494 AAT_I Aspartate aminot 29.6 45 0.00097 27.8 2.6 31 87-117 106-136 (170)
423 cd05013 SIS_RpiR RpiR-like pro 29.5 61 0.0013 26.2 3.3 67 42-108 25-92 (139)
424 PRK13396 3-deoxy-7-phosphohept 29.5 1.9E+02 0.0041 28.6 7.0 59 41-110 113-172 (352)
425 KOG0053 Cystathionine beta-lya 29.3 68 0.0015 32.2 4.0 29 85-113 174-202 (409)
426 TIGR02313 HpaI-NOT-DapA 2,4-di 29.3 1.8E+02 0.0038 27.8 6.8 36 25-66 70-105 (294)
427 PRK13957 indole-3-glycerol-pho 29.2 65 0.0014 30.1 3.7 22 89-110 137-158 (247)
428 PF04343 DUF488: Protein of un 29.1 97 0.0021 25.2 4.4 30 92-122 2-31 (122)
429 cd03316 MR_like Mandelate race 29.0 85 0.0018 30.7 4.7 68 41-109 201-297 (357)
430 TIGR02539 SepCysS Sep-tRNA:Cys 28.8 53 0.0011 32.4 3.2 32 82-113 155-186 (370)
431 PRK07568 aspartate aminotransf 28.7 60 0.0013 32.1 3.6 29 88-116 180-208 (397)
432 PRK07269 cystathionine gamma-s 28.7 51 0.0011 32.6 3.1 27 86-112 149-175 (364)
433 PF07894 DUF1669: Protein of u 28.7 48 0.001 31.5 2.7 23 87-110 134-156 (284)
434 PRK03620 5-dehydro-4-deoxygluc 28.6 1.9E+02 0.0041 27.8 6.9 35 25-66 77-111 (303)
435 PF03932 CutC: CutC family; I 28.6 1.8E+02 0.004 26.2 6.3 51 40-108 69-119 (201)
436 TIGR01265 tyr_nico_aTase tyros 28.4 72 0.0016 31.8 4.2 29 89-117 188-216 (403)
437 PRK15408 autoinducer 2-binding 28.4 1.7E+02 0.0036 28.5 6.6 66 38-108 34-110 (336)
438 PRK09064 5-aminolevulinate syn 28.3 1E+02 0.0022 30.7 5.2 27 87-113 192-218 (407)
439 smart00052 EAL Putative diguan 28.3 58 0.0013 29.3 3.2 86 26-114 118-214 (241)
440 TIGR02127 pyrF_sub2 orotidine 28.2 65 0.0014 30.4 3.5 30 84-113 65-96 (261)
441 TIGR00676 fadh2 5,10-methylene 28.1 1.8E+02 0.0039 27.4 6.6 67 42-110 14-93 (272)
442 PF00218 IGPS: Indole-3-glycer 28.1 69 0.0015 30.1 3.6 22 89-110 144-165 (254)
443 cd03329 MR_like_4 Mandelate ra 28.1 2E+02 0.0044 28.3 7.3 79 23-108 188-297 (368)
444 PLN00175 aminotransferase fami 28.0 68 0.0015 32.2 3.9 30 88-117 205-234 (413)
445 PRK08573 phosphomethylpyrimidi 27.9 1.1E+02 0.0023 31.3 5.4 77 41-117 15-111 (448)
446 PRK05301 pyrroloquinoline quin 27.9 79 0.0017 31.3 4.3 28 87-114 138-165 (378)
447 cd00617 Tnase_like Tryptophana 27.8 66 0.0014 32.7 3.7 23 89-111 172-194 (431)
448 cd03413 CbiK_C Anaerobic cobal 27.7 47 0.001 26.4 2.1 30 43-72 42-71 (103)
449 PRK07812 O-acetylhomoserine am 27.6 52 0.0011 33.5 3.0 84 21-112 105-194 (436)
450 PRK11858 aksA trans-homoaconit 27.5 4E+02 0.0087 26.5 9.2 40 171-211 144-184 (378)
451 PLN02624 ornithine-delta-amino 27.4 1.9E+02 0.0041 29.8 7.1 63 41-117 210-272 (474)
452 TIGR02090 LEU1_arch isopropylm 27.4 4.4E+02 0.0096 26.0 9.5 40 171-211 140-180 (363)
453 TIGR02637 RhaS rhamnose ABC tr 27.4 1.8E+02 0.0039 27.3 6.6 46 41-108 41-86 (302)
454 TIGR02109 PQQ_syn_pqqE coenzym 27.2 92 0.002 30.5 4.6 28 87-114 129-156 (358)
455 PLN02460 indole-3-glycerol-pho 27.1 75 0.0016 31.1 3.8 22 89-110 216-237 (338)
456 KOG2584 Dihydroorotase and rel 27.1 1E+02 0.0022 31.2 4.7 117 71-211 66-188 (522)
457 cd03319 L-Ala-DL-Glu_epimerase 27.0 1.3E+02 0.0029 28.9 5.6 67 42-109 190-285 (316)
458 PRK07777 aminotransferase; Val 26.7 72 0.0016 31.5 3.8 30 88-117 177-206 (387)
459 COG2723 BglB Beta-glucosidase/ 26.7 2.9E+02 0.0064 28.3 8.0 98 40-186 56-157 (460)
460 cd02810 DHOD_DHPD_FMN Dihydroo 26.7 4.3E+02 0.0094 24.8 9.0 74 23-113 97-172 (289)
461 PRK06290 aspartate aminotransf 26.6 1.4E+02 0.0031 29.8 6.0 30 88-117 197-226 (410)
462 cd03325 D-galactonate_dehydrat 26.6 1.1E+02 0.0024 30.0 5.0 81 21-108 173-283 (352)
463 TIGR01329 cysta_beta_ly_E cyst 26.4 56 0.0012 32.4 3.0 84 21-112 82-170 (378)
464 cd05005 SIS_PHI Hexulose-6-pho 26.4 2.8E+02 0.0062 23.9 7.2 55 50-108 53-107 (179)
465 PF02836 Glyco_hydro_2_C: Glyc 26.4 2.7E+02 0.0058 26.4 7.5 66 23-112 11-81 (298)
466 KOG2741 Dimeric dihydrodiol de 26.3 66 0.0014 31.5 3.2 76 29-114 50-134 (351)
467 PRK06108 aspartate aminotransf 26.3 66 0.0014 31.6 3.4 30 88-117 176-205 (382)
468 cd03412 CbiK_N Anaerobic cobal 26.1 1E+02 0.0022 25.4 4.0 60 42-101 55-125 (127)
469 cd00958 DhnA Class I fructose- 26.1 72 0.0016 29.2 3.4 24 89-112 108-131 (235)
470 PRK14462 ribosomal RNA large s 26.0 2.1E+02 0.0046 28.3 6.8 75 22-109 259-333 (356)
471 PRK08056 threonine-phosphate d 26.0 81 0.0018 30.8 4.0 29 88-116 160-188 (356)
472 PRK05958 8-amino-7-oxononanoat 26.0 54 0.0012 32.1 2.7 28 85-112 180-207 (385)
473 PF01565 FAD_binding_4: FAD bi 25.9 85 0.0018 25.8 3.6 22 87-108 8-29 (139)
474 PRK05957 aspartate aminotransf 25.9 73 0.0016 31.6 3.6 30 88-117 178-207 (389)
475 TIGR03700 mena_SCO4494 putativ 25.8 1E+02 0.0023 30.2 4.7 34 81-114 179-212 (351)
476 PLN02721 threonine aldolase 25.8 74 0.0016 30.7 3.6 25 88-112 156-180 (353)
477 TIGR00666 PBP4 D-alanyl-D-alan 25.8 1.3E+02 0.0028 29.6 5.3 76 43-119 20-100 (345)
478 TIGR03539 DapC_actino succinyl 25.7 73 0.0016 31.1 3.6 30 88-117 160-189 (357)
479 PRK02227 hypothetical protein; 25.7 1.3E+02 0.0028 27.9 4.8 51 47-108 135-185 (238)
480 TIGR01927 menC_gamma/gm+ o-suc 25.7 1.6E+02 0.0035 28.3 5.9 81 23-109 153-263 (307)
481 cd02873 GH18_IDGF The IDGF's ( 25.7 76 0.0017 32.0 3.8 28 166-193 101-128 (413)
482 cd07576 R-amidase_like Pseudom 25.7 2.1E+02 0.0045 26.1 6.5 68 40-112 16-84 (254)
483 PLN02417 dihydrodipicolinate s 25.6 2.4E+02 0.0053 26.6 7.0 35 26-66 72-106 (280)
484 cd03321 mandelate_racemase Man 25.6 1.7E+02 0.0038 28.7 6.2 79 23-107 185-292 (355)
485 cd07585 nitrilase_7 Uncharacte 25.6 2.7E+02 0.0059 25.5 7.3 68 40-111 16-83 (261)
486 PRK07811 cystathionine gamma-s 25.5 62 0.0013 32.3 3.1 29 85-113 158-186 (388)
487 COG3449 DNA gyrase inhibitor [ 25.4 3E+02 0.0066 23.7 6.7 88 324-412 7-97 (154)
488 TIGR03550 F420_cofG 7,8-dideme 25.4 1.1E+02 0.0023 29.8 4.6 61 48-114 112-173 (322)
489 PRK05926 hypothetical protein; 25.3 73 0.0016 31.7 3.5 36 82-117 199-234 (370)
490 PLN02656 tyrosine transaminase 25.2 81 0.0018 31.6 3.9 29 89-117 188-216 (409)
491 PRK09082 methionine aminotrans 25.2 65 0.0014 31.9 3.2 29 88-116 181-209 (386)
492 cd00377 ICL_PEPM Members of th 25.1 1.9E+02 0.004 26.9 6.0 46 41-110 158-203 (243)
493 TIGR01325 O_suc_HS_sulf O-succ 25.1 60 0.0013 32.2 2.9 30 84-113 150-179 (380)
494 PRK00125 pyrF orotidine 5'-pho 25.0 74 0.0016 30.3 3.3 30 84-113 65-96 (278)
495 COG2342 Predicted extracellula 25.0 65 0.0014 30.5 2.8 42 17-65 107-148 (300)
496 TIGR00542 hxl6Piso_put hexulos 25.0 3E+02 0.0064 25.7 7.5 62 41-111 92-154 (279)
497 PRK14041 oxaloacetate decarbox 24.9 7.8E+02 0.017 25.4 11.2 40 171-211 152-192 (467)
498 TIGR03849 arch_ComA phosphosul 24.9 2.3E+02 0.0049 26.3 6.3 46 172-218 71-119 (237)
499 PRK12331 oxaloacetate decarbox 24.9 7.6E+02 0.017 25.3 11.5 39 172-211 154-193 (448)
500 COG1879 RbsB ABC-type sugar tr 24.8 1.8E+02 0.0038 27.8 6.0 26 88-113 101-127 (322)
No 1
>PLN02361 alpha-amylase
Probab=100.00 E-value=1e-80 Score=611.65 Aligned_cols=393 Identities=87% Similarity=1.514 Sum_probs=351.8
Q ss_pred ccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 015125 21 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (413)
Q Consensus 21 ~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h 100 (413)
.+.++.||+|+|+|++++..+|++|+++|+||++||||+|||+|++++.++|||+|.|||+++|+|||++||++||++||
T Consensus 7 ~~~~~~v~lQ~F~W~~~~~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h 86 (401)
T PLN02361 7 IRNGREILLQAFNWESHKHDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMK 86 (401)
T ss_pred hcCCCcEEEEEEeccCCccHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHH
Confidence 55678999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHH
Q 015125 101 QHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRW 180 (413)
Q Consensus 101 ~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~ 180 (413)
++||+||+|+|+||++...++..+.|..|.+.+.+|++..++....+.++......+..+||||++||+||++++++++|
T Consensus 87 ~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~w 166 (401)
T PLN02361 87 QYNVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIW 166 (401)
T ss_pred HcCCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHH
Confidence 99999999999999987777777777777654456776544433333333344556788999999999999999999998
Q ss_pred HHhhcCCCeEeecccCCCcHHHHHHHHHhhCCCeEEEcccCCCCCC--CCCCCCccchhhHhHhhhhccCCCcccccCcc
Q 015125 181 LRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYN--SHGLDYNQDSHRQRIINWIDGTGQLSAAFDFT 258 (413)
Q Consensus 181 w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~~~~vgE~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~ 258 (413)
|++++||||||+|+|++++.+||++++++++|.|+|||+|.+..+. ++.++|.++..++.+..|++.+++..++|||+
T Consensus 167 l~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF~ 246 (401)
T PLN02361 167 LRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDFT 246 (401)
T ss_pred HHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecHH
Confidence 8877999999999999999999999999999989999999875442 45578887777788999999877788999999
Q ss_pred chHHHHHHhccchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC
Q 015125 259 TKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD 338 (413)
Q Consensus 259 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g 338 (413)
++..+++++.++.+++.+..++.+++++..|.++|+|++|||++|+++.++.+..++++|+|+|||.||+||||||+.++
T Consensus 247 l~~~l~~a~~~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~Vyyg~~~~ 326 (401)
T PLN02361 247 TKGILQEAVKGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPTVFYDHFYD 326 (401)
T ss_pred HHHHHHHHHhhhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCeEeeccccC
Confidence 99999999977778888877766677888899999999999999999988878889999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEECCEEEEEEcCCCCCCCCCCcEEeeeCCceEEeeC
Q 015125 339 WGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413 (413)
Q Consensus 339 w~~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r~~~~lv~lnn~~~~~~~~~~~~~~s~~~~~~~~~ 413 (413)
|+.++.+.|++|+++||++++++.|+++++..++++++-.-+++++|-|+....+|++.+|+++.||.+|+||.+
T Consensus 327 ~~~~~~~~I~~Li~lRk~~~~~~~s~~~i~~a~~~~y~a~i~~~~~~k~g~~~~~p~~~~~~~~~~g~~~~~w~~ 401 (401)
T PLN02361 327 WGGSIHDQIVKLIDIRKRQDIHSRSSIRILEAQSNLYSAIIDEKLCMKIGDGSWCPSGREWTLATSGHRYAVWHK 401 (401)
T ss_pred CChHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCeEEEEECCeEEEEecCCCCCCCCCCceEEEecCceEEeeC
Confidence 998999999999999999999999999999999999999889999999999999998888999999999999986
No 2
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=4.7e-78 Score=599.67 Aligned_cols=386 Identities=48% Similarity=0.988 Sum_probs=330.8
Q ss_pred CceeEEEeeecCCCCC--ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCC-CCCCCHHHHHHHHHHHH
Q 015125 24 GREILFQGFNWESCKH--DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMK 100 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~--g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h 100 (413)
+++||+|+|+|+++++ |+|++|++|||||++||||+|||+||+++.++|||+|.|||+|+ ++|||++||++||++||
T Consensus 23 ~~~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH 102 (428)
T PLN00196 23 AGQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFH 102 (428)
T ss_pred CCCEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHH
Confidence 4479999999998665 69999999999999999999999999999999999999999999 69999999999999999
Q ss_pred HcCCEEEEEEccccCcCCCCCCCCcccccCC----CCCCCCCCCee----ccCCCCCCCcCCCCCCCCCcCCCCCHHHHH
Q 015125 101 QHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDEHAVT----SCTGGLGNGSTGDNFHGVPNIDHTQHFVRK 172 (413)
Q Consensus 101 ~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~dln~~~~~vr~ 172 (413)
++||+||+|+|+||++.++....+.|..|.+ ...+|.+...+ .+.++.++...+..+..+||||++||+||+
T Consensus 103 ~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~ 182 (428)
T PLN00196 103 GKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQR 182 (428)
T ss_pred HCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHH
Confidence 9999999999999999887654444543332 12445432222 122233333455667899999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCCCeEEEcccCCCCC-CCCCCCCccchhhHhHhhhhccCCCc
Q 015125 173 DIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNY-NSHGLDYNQDSHRQRIINWIDGTGQL 251 (413)
Q Consensus 173 ~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~~~~vgE~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (413)
+|+++++||++++||||||+|+|++++.+|+++++++.+|.|+|||+|.+++| +.+++.|.++.+++.+..|++.+++.
T Consensus 183 ~l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~~l~~~g~~ 262 (428)
T PLN00196 183 ELIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVNWVDRVGGA 262 (428)
T ss_pred HHHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEeccccccccCCccccchhhHHHHHHHHHhcCCc
Confidence 99999999988999999999999999999999999988899999999988666 46788888777788888999876542
Q ss_pred ---ccccCccchHHHHHHhccchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCe
Q 015125 252 ---SAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGI 328 (413)
Q Consensus 252 ---~~~~df~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGi 328 (413)
.++|||++...+..++.++.+++.+......++++..|..+|+|++||||+|+++.+..+..+.++|+|++||+||+
T Consensus 263 ~~~~~~fDF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~~~~~~~~~~~lAyA~iLT~pG~ 342 (428)
T PLN00196 263 ASPATVFDFTTKGILNVAVEGELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPFPSDKVMQGYAYILTHPGN 342 (428)
T ss_pred cCcceeecccchHHHHHHhcCCchhhhhhcccCcchhhcChhhceeeccCCCCccccccCCCccchHHHHHHHHHcCCCc
Confidence 45899999876666666666677666655556677789999999999999999998876777889999999999999
Q ss_pred eEEecCcccCCchhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEECCEEEEEEcCC----CCCCCCCCcEEeee
Q 015125 329 PSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGDG----SWCPAGKEWTLATS 404 (413)
Q Consensus 329 P~Iy~G~E~gw~~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r~~~~lv~lnn~----~~~~~~~~~~~~~s 404 (413)
||||||+.|+|+ +.+.|++|+++|+++++++.|+++++..+++++++.|+++++|+||.. ..+|+ +|++++|
T Consensus 343 P~IyYg~~~~~~--~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~~d~yv~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 418 (428)
T PLN00196 343 PCIFYDHFFDWG--LKEEIAALVSIRNRNGITPTSELRIMEADADLYLAEIDGKVIVKIGSRYDVSHLIPE--GFQVVAH 418 (428)
T ss_pred ceEeeCCCcCcc--HHHHHHHHHHHHHhCCCcCCccEEEEEecCCEEEEEECCEEEEEECCCCCccccCcc--cceEEEe
Confidence 999999999996 888999999999999999999999999999999999999999999994 67786 6999999
Q ss_pred CCceEEeeC
Q 015125 405 GHKYAVWHK 413 (413)
Q Consensus 405 ~~~~~~~~~ 413 (413)
|.+|+||.+
T Consensus 419 g~~~~~w~~ 427 (428)
T PLN00196 419 GNGYAVWEK 427 (428)
T ss_pred cCCeEEEec
Confidence 999999975
No 3
>PLN02784 alpha-amylase
Probab=100.00 E-value=4.2e-72 Score=577.29 Aligned_cols=390 Identities=52% Similarity=1.032 Sum_probs=345.4
Q ss_pred cccCCceeEEEeeecCCCCCc-cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 015125 20 VIRNGREILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHK 98 (413)
Q Consensus 20 ~~~~~~~~i~~~f~~~~~~~g-~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~ 98 (413)
.+..+.++|+|+|+|+++++| +|++|+++|+||++||||+|||+|++++.+++||+|.|||+++++|||++||++||++
T Consensus 497 ~~~~~~eVmlQgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a 576 (894)
T PLN02784 497 GTGSGFEILCQGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKS 576 (894)
T ss_pred cccCCceEEEEeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHH
Confidence 466778899999999999996 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccC---CCCCCCcCCCCCCCCCcCCCCCHHHHHHHH
Q 015125 99 MKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCT---GGLGNGSTGDNFHGVPNIDHTQHFVRKDII 175 (413)
Q Consensus 99 ~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~dln~~~~~vr~~l~ 175 (413)
||++||+||+|+|+||++..+...++.|..|.+ ..+|++..++... .+.++.+....|..+||||+.||+||++++
T Consensus 577 ~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g-~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL~ 655 (894)
T PLN02784 577 FHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGG-RLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLK 655 (894)
T ss_pred HHHCCCEEEEEECcccccccccCCCCcccccCC-eecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHHHHH
Confidence 999999999999999999876554556665554 3456654333221 123333445567899999999999999999
Q ss_pred HHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCCCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCccccc
Q 015125 176 AWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAF 255 (413)
Q Consensus 176 ~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 255 (413)
++++||++++||||||+|+|++++.+|+++++++.++.|+|||+|.+++|..+.++|+++++++.+..|++.+++..++|
T Consensus 656 ~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~~g~~~Ynqd~~rq~l~dwi~~tgg~~saF 735 (894)
T PLN02784 656 EWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATNGTAGAF 735 (894)
T ss_pred HHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEeccccccccCccccCchhHHHHHHHHHHhCCCceeee
Confidence 99999998999999999999999999999999999999999999998777678999999999999999999988888999
Q ss_pred CccchHHHHHHhc-cchhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecC
Q 015125 256 DFTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYD 334 (413)
Q Consensus 256 df~~~~~l~~~~~-g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G 334 (413)
||+++..+.+++. ++.+++.+..++.+++++..|.++|+|++||||++.++.+..+..+..+|||+|||.||+||||||
T Consensus 736 Dfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~~w~~p~~k~~~AYAyILthpG~PcVFy~ 815 (894)
T PLN02784 736 DVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGKEMQGYAYILTHPGTPAVFYD 815 (894)
T ss_pred chhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcccCCCCccchhhHHHHHHcCCCcceEEeh
Confidence 9999999999995 567888887777788999999999999999999998887777777888999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEECCEEEEEEcCCCCCCCC--CCcEEeeeCCceEEee
Q 015125 335 HFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAG--KEWTLATSGHKYAVWH 412 (413)
Q Consensus 335 ~E~gw~~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r~~~~lv~lnn~~~~~~~--~~~~~~~s~~~~~~~~ 412 (413)
+.|+ .+.+.|++|+.+|+++-.-....++++..+.++++-.-+++++|-|+..+.+|+. .+|++++||.+|+||.
T Consensus 816 h~y~---~~~~~I~~Li~iRk~~gI~~~S~v~i~~a~~~~Y~a~i~~k~~~kiG~~~~~p~~~~~~~~~~~sG~~yavW~ 892 (894)
T PLN02784 816 HIFS---HYHPEIASLISLRNRQKIHCRSEVKITKAERDVYAAIIDEKVAMKIGPGHYEPPNGPQNWSVALEGQDYKVWE 892 (894)
T ss_pred hhhh---hhHHHHHHHHHHHHHcCCCCCCceeEEEecCCcEEEEeCCeeEEEECCcccCCCCCCCceEEEEecCCeEEEe
Confidence 9985 3577799999999999777788999999999999998899999999999999753 4799999999999997
Q ss_pred C
Q 015125 413 K 413 (413)
Q Consensus 413 ~ 413 (413)
+
T Consensus 893 k 893 (894)
T PLN02784 893 T 893 (894)
T ss_pred C
Confidence 5
No 4
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=4.6e-67 Score=534.29 Aligned_cols=348 Identities=26% Similarity=0.469 Sum_probs=268.1
Q ss_pred ceeEEEeeecCCCCCc-cHHHHHhhhhhHHHcCCCEEEcCCCCCCCC---CCCCCcccCC---------CCCCCCCCHHH
Q 015125 25 REILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGYLPQNLY---------SLNSSYGSEHL 91 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~g-~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~---~~gY~~~d~~---------~id~~~Gt~~~ 91 (413)
.+||||+|+|++..+| +|++|++|||||++||||+|||+||+++.+ +|||++.||| .|||+|||++|
T Consensus 3 ~~~~~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~d 82 (479)
T PRK09441 3 NGTMMQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEE 82 (479)
T ss_pred CceEEEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHH
Confidence 4699999999988776 788999999999999999999999999874 6999999999 68999999999
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCC--CCC----------C----c-----ccccCCC-----C----CCCCCCCe
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQ--GHG----------G----K-----YNRYDGI-----P----LSWDEHAV 141 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~--~~~----------~----~-----y~~~~~~-----~----~~~~~~~~ 141 (413)
||+||++||++||+||+|+|+|||+..+. ++. + . |..|... . ..|+..+-
T Consensus 83 l~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (479)
T PRK09441 83 LLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSG 162 (479)
T ss_pred HHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCC
Confidence 99999999999999999999999997443 221 0 0 0011100 0 01111100
Q ss_pred eccC---------------CCCCC----CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHH
Q 015125 142 TSCT---------------GGLGN----GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKY 202 (413)
Q Consensus 142 ~~~~---------------~~~~~----~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~ 202 (413)
..+. ..|.. +..++.+..+||||++||+||++|++++++|++++||||||+|+|++++.+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~f 242 (479)
T PRK09441 163 TDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWF 242 (479)
T ss_pred cccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHHH
Confidence 0000 11111 1122345669999999999999999999999977999999999999999999
Q ss_pred HHHHHHhhC-----CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc-chhhhhh
Q 015125 203 VKEYIEGAR-----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG-QFWRLRD 276 (413)
Q Consensus 203 ~~~~~~~~~-----~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g-~~~~~~~ 276 (413)
|++++++++ +.+++||+|.+. ...+..|++..+...++|||++...+++++.+ ....+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~vGE~~~~~--------------~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~~~~~l~~ 308 (479)
T PRK09441 243 IKEWIEHVREVAGKDLFIVGEYWSHD--------------VDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQGRDYDMRN 308 (479)
T ss_pred HHHHHHHHHHhcCCCeEEEEeecCCC--------------hHHHHHHHHhcCCCceEecHHHHHHHHHHHhcCCccchHh
Confidence 999998864 368999999763 24566777654445679999999999998843 3333433
Q ss_pred hcCCCCCcccccCCcceecccCCCCCcCCCCCCCCh-hHHHHHHHHHhcCC-CeeEEecCcccCCch-----hHHHHHHH
Q 015125 277 AQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPS-NHIMEGYAYILMHP-GIPSVFYDHFYDWGD-----SIHNQIVK 349 (413)
Q Consensus 277 ~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~-~~~~la~a~ll~~p-GiP~Iy~G~E~gw~~-----~l~~~i~~ 349 (413)
.... ......|..+++|++|||++|+.+...... .+.++|++++||+| |+|+||||+|+|+.. +++++|++
T Consensus 309 ~~~~--~~~~~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~~~~~l~~~i~~ 386 (479)
T PRK09441 309 IFDG--TLVEADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLREEGYPCVFYGDYYGASGYYIDMPFKEKLDK 386 (479)
T ss_pred hhCc--chhhcCcccceeeeccccCCCcccccccccccchHHHHHHHHhCCCCceeeEeccccCCCCCcccchHHHHHHH
Confidence 3321 112234557899999999999988654322 23689999999999 999999999998753 69999999
Q ss_pred HHHHHHhCcccCCCCeEEEEecCCEEEEEE-C----CEEEEEEcCCC
Q 015125 350 LMDVRRQQDIHSRSSIKILEAQSNLYSAII-G----DKVCMKIGDGS 391 (413)
Q Consensus 350 L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r-~----~~~lv~lnn~~ 391 (413)
|+++|+++ ..|++..+..++++++|.| + +.++|+|||++
T Consensus 387 Li~lRk~~---~~G~~~~~~~~~~~~~~~R~~~~~~~~vvvvinn~~ 430 (479)
T PRK09441 387 LLLARKNF---AYGEQTDYFDHPNCIGWTRSGDEENPGLAVVISNGD 430 (479)
T ss_pred HHHHHHHh---CCCCeeEeecCCCEEEEEEecCCCCccEEEEEECCC
Confidence 99999997 4788988888899999999 2 35888898854
No 5
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1.6e-64 Score=525.93 Aligned_cols=324 Identities=18% Similarity=0.285 Sum_probs=245.3
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
|||+||++||||||+||||+|||+||++++++|||++.||++|||+|||+++|++||++||++|||||||+|+||+|.+|
T Consensus 176 GDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~ 255 (598)
T PRK10785 176 GDLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSH 255 (598)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC-------cccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHH----HHHHHHhh-cCC
Q 015125 120 QGHGG-------KYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIA----WLRWLRNT-VGF 187 (413)
Q Consensus 120 ~~~~~-------~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~----~~~~w~~~-~gv 187 (413)
++++. .|..-.+...+|.. +.+ .+.......+..+|+||++||+||++|++ ++++|+++ +||
T Consensus 256 ~~f~~~~~~~~ga~~~~~spy~dwf~-----~~~-~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~gi 329 (598)
T PRK10785 256 PWFDRHNRGTGGACHHPDSPWRDWYS-----FSD-DGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNI 329 (598)
T ss_pred HHHHHhhccccccccCCCCCcceeeE-----ECC-CCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCC
Confidence 76531 11110000111211 000 01111112346799999999999999995 89999986 999
Q ss_pred CeEeecccCCC--------cHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCccccc
Q 015125 188 QDFRFDFARGY--------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAF 255 (413)
Q Consensus 188 DGfR~D~a~~i--------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 255 (413)
||||+|+|+.+ +.+||+++.++++ | .+++||+|... ..|+. ++++++++
T Consensus 330 DG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~------------------~~~l~-~~~~d~~m 390 (598)
T PRK10785 330 DGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLGEHFGDA------------------RQWLQ-ADVEDAAM 390 (598)
T ss_pred cEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEEEEeccCCh------------------hhhcc-Cccccccc
Confidence 99999999988 4689999988875 3 78899999652 12222 12234444
Q ss_pred Cc-cchHHHHHHhcc----------chhhhhhhcCCCCCcccccCC----cceecccCCCCCcCCCCCCCChhHHHHHHH
Q 015125 256 DF-TTKGILQEAVKG----------QFWRLRDAQGKPPGVMGWWPS----RAVTFLDNHDTGSTQAHWPFPSNHIMEGYA 320 (413)
Q Consensus 256 df-~~~~~l~~~~~g----------~~~~~~~~~~~~~~~~~~~p~----~~v~flenHD~~R~~~~~~~~~~~~~la~a 320 (413)
++ .+...++..+.+ +...+...+.. .....|. .++||++|||++|+.+.+..+..++++|++
T Consensus 391 ny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ 467 (598)
T PRK10785 391 NYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDE---YRAGLPHQQQLRQFNQLDSHDTARFKTLLGGDKARMPLALV 467 (598)
T ss_pred cchhhhhHHHHHhhccccccCccCCCHHHHHHHHHH---HHHhCCHHHHHHhhhccCCCccchhhhhhCCCHHHHHHHHH
Confidence 43 222233333321 11111111110 0011121 357999999999999988767788999999
Q ss_pred HHhcCCCeeEEecCcccC--------------Cc-----hhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEE--
Q 015125 321 YILMHPGIPSVFYDHFYD--------------WG-----DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAII-- 379 (413)
Q Consensus 321 ~ll~~pGiP~Iy~G~E~g--------------w~-----~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r-- 379 (413)
++||+||+||||||||+| |+ .++++++|+|++||+++|+|+.|+++.+..++++++|.|
T Consensus 468 ll~t~pGiP~IYYGdE~G~~g~~dp~~R~~m~W~~~~~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~~~~v~af~R~~ 547 (598)
T PRK10785 468 WLFTWPGVPCIYYGDEVGLDGGNDPFCRKPFPWDEAKQDGALLALYQRMIALRKKSQALRRGGCQVLYAEGNVVVFARVL 547 (598)
T ss_pred HHHhCCCCcEEEeeeeccccCCCCCCccCCcCCCcccCchHHHHHHHHHHHHHhhCcccccCcEEEEEeCCCEEEEEEEC
Confidence 999999999999999975 43 479999999999999999999999999998889999998
Q ss_pred -CCEEEEEEcCCC
Q 015125 380 -GDKVCMKIGDGS 391 (413)
Q Consensus 380 -~~~~lv~lnn~~ 391 (413)
++.++|++|++.
T Consensus 548 ~~~~vlVviN~s~ 560 (598)
T PRK10785 548 QQQRVLVAINRGE 560 (598)
T ss_pred CCCEEEEEEECCC
Confidence 578899999873
No 6
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=2.2e-61 Score=501.73 Aligned_cols=348 Identities=17% Similarity=0.256 Sum_probs=256.2
Q ss_pred ccccccccCCceeEEEeeecCCCC-------------C----------ccHHHHHhhhhhHHHcCCCEEEcCCCCCC---
Q 015125 15 TDLGAVIRNGREILFQGFNWESCK-------------H----------DWWRNLERKVPDISKSGFTSVWLPPATHS--- 68 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~-------------~----------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~--- 68 (413)
+..+..++. .||||+|.-.|++ + |||+||+++|+||++||||+|||+||+++
T Consensus 181 ~~~~~~W~~--aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~ 258 (683)
T PRK09505 181 AAAPFDWHN--ATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQIHG 258 (683)
T ss_pred CCCChhhcc--CcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCcccccccc
Confidence 334666755 5899998876641 1 79999999999999999999999999986
Q ss_pred ------------CCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCC------CCC-------
Q 015125 69 ------------FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ------GHG------- 123 (413)
Q Consensus 69 ------------~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~------~~~------- 123 (413)
.++|||++.||+.|||+||++++|++||++||++||+||||+|+||++..+. +++
T Consensus 259 ~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~ 338 (683)
T PRK09505 259 WVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGD 338 (683)
T ss_pred ccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhcc
Confidence 2679999999999999999999999999999999999999999999996321 111
Q ss_pred -------CcccccC-CCCCCCCCCCe-eccCC--CCCCCc-------------------CCCCCCCCCcCCCCC------
Q 015125 124 -------GKYNRYD-GIPLSWDEHAV-TSCTG--GLGNGS-------------------TGDNFHGVPNIDHTQ------ 167 (413)
Q Consensus 124 -------~~y~~~~-~~~~~~~~~~~-~~~~~--~~~~~~-------------------~~~~~~~~~dln~~~------ 167 (413)
+.|..|. ..+..|++.+. ..+.+ .|...+ ..+.+..|||||+++
T Consensus 339 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~l 418 (683)
T PRK09505 339 ENKKTLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGL 418 (683)
T ss_pred ccccccCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCcccccc
Confidence 1222211 11233443211 11111 111000 012235688888874
Q ss_pred -----------------HHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC------------------C
Q 015125 168 -----------------HFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR------------------P 212 (413)
Q Consensus 168 -----------------~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~------------------~ 212 (413)
|+||++|++++++|++++||||||+|+|+|++.+||+++.++++ +
T Consensus 419 p~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~~~~~~ 498 (683)
T PRK09505 419 PVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKALDDAP 498 (683)
T ss_pred chhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccccccCC
Confidence 59999999999999989999999999999999999999876541 2
Q ss_pred CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhc--cchhhhhhhcCCCCCcccccCC
Q 015125 213 IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK--GQFWRLRDAQGKPPGVMGWWPS 290 (413)
Q Consensus 213 ~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~--g~~~~~~~~~~~~~~~~~~~p~ 290 (413)
++++||+|...+ ....|.. .++++++||++...+.+++. .....+..... ... .+.
T Consensus 499 ~~~vGEvw~~~~---------------~~~~y~~--~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~---~~~--~~~ 556 (683)
T PRK09505 499 FWMTGEAWGHGV---------------MKSDYYR--HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMA---EKL--QDF 556 (683)
T ss_pred eEEEEEecCCch---------------hhHHHHh--hcCccccCchHHHHHHHHHHHHHHHHHHHHHHh---hhc--Ccc
Confidence 579999997521 1123332 35789999998766554432 11222211111 000 122
Q ss_pred cceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC-------------------Cc------hhHHH
Q 015125 291 RAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD-------------------WG------DSIHN 345 (413)
Q Consensus 291 ~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g-------------------w~------~~l~~ 345 (413)
..++|++|||++|+.+.... ..++++|++++||+||+|+||||+|+| |. .++++
T Consensus 557 ~~l~FLdNHDt~Rf~s~~~~-~~~~klAaall~tlpGiP~IYYGdEiGm~gg~~g~DP~~~~R~~M~W~~~~~~~~~Ll~ 635 (683)
T PRK09505 557 NVLSYLSSHDTRLFFEGGQS-YAKQRRAAELLLLAPGAVQIYYGDESARPFGPTGSDPLQGTRSDMNWQEVSGKSAALLA 635 (683)
T ss_pred ceeecccCCChhhhhhhcCc-hHHHHHHHHHHHhCCCCcEEEechhhCccCCCCCCCCcccccccCCccccccchHHHHH
Confidence 46789999999999887653 368899999999999999999999975 32 26899
Q ss_pred HHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEE---CCEEEEEEc
Q 015125 346 QIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAII---GDKVCMKIG 388 (413)
Q Consensus 346 ~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~~~r---~~~~lv~ln 388 (413)
++|+|++||+++|+|+.|+++.+. ++++++|.| +++++||+|
T Consensus 636 ~~kkLi~LRk~~pAL~~G~~~~l~-~~~~~aF~R~~~~d~vlVv~~ 680 (683)
T PRK09505 636 HWQKLGQFRARHPAIGAGKQTTLS-LKQYYAFVREHGDDKVMVVWA 680 (683)
T ss_pred HHHHHHHHHhhCHHhhCCceEEec-cCCEEEEEEEeCCCEEEEEEe
Confidence 999999999999999999999875 568999999 567777776
No 7
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=3.1e-61 Score=497.43 Aligned_cols=365 Identities=16% Similarity=0.251 Sum_probs=267.2
Q ss_pred eeEEEeeecCCCC-----CccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCK-----HDWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~-----~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.||||+|..+|.+ -|||+||+++||||++||||+|||+||+++++ +|||++.||++|+|+||+.++|++||++|
T Consensus 6 ~viYqi~~~~f~d~~~~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~a 85 (539)
T TIGR02456 6 AVFYEVHVRSFFDSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEA 85 (539)
T ss_pred ceEEEEehhHhhcCCCCCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHH
Confidence 5999999998875 37999999999999999999999999999986 79999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCCC-------Ccccc---cCCCCCCCCCCC--eecc-CCCCC-CC-----cCCCCCCCC
Q 015125 100 KQHKVRAMADIVINHRVGTTQGHG-------GKYNR---YDGIPLSWDEHA--VTSC-TGGLG-NG-----STGDNFHGV 160 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~~-------~~y~~---~~~~~~~~~~~~--~~~~-~~~~~-~~-----~~~~~~~~~ 160 (413)
|++||+||+|+|+||++.++++++ +.|.. +.+.+..+.... ++.. ...|. .+ .....+..+
T Consensus 86 h~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~ 165 (539)
T TIGR02456 86 HARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQ 165 (539)
T ss_pred HHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCC
Confidence 999999999999999999998652 22211 111000111000 0000 01111 00 011134689
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC-------------cHHHHHHHHHhhC---C-CeEEEcccCCC
Q 015125 161 PNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY-------------SAKYVKEYIEGAR---P-IFSVGEYWDSC 223 (413)
Q Consensus 161 ~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i-------------~~~~~~~~~~~~~---~-~~~vgE~~~~~ 223 (413)
|+||++||+||++|++++++|+ ++||||||||+++++ ..+||+++.+.++ | .+++||++..
T Consensus 166 pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~~~~- 243 (539)
T TIGR02456 166 PDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLLAEANQW- 243 (539)
T ss_pred CccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEEEEeCCC-
Confidence 9999999999999999999999 699999999999876 3579999988775 3 6789997543
Q ss_pred CCCCCCCCCccchhhHhHhhhhcc-CC-CcccccCccchHHHHHHh-ccchhhhhhhcCCCCCcccccCCcceecccCCC
Q 015125 224 NYNSHGLDYNQDSHRQRIINWIDG-TG-QLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHD 300 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~~~df~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~~~p~~~v~flenHD 300 (413)
...+..|.+. .+ +++++|+|++...+..++ .++...+...+...... ..+...++|++|||
T Consensus 244 --------------~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~~~~--~~~~~~~~fl~nHD 307 (539)
T TIGR02456 244 --------------PEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKETPDI--PDSCQWCIFLRNHD 307 (539)
T ss_pred --------------HHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHhhhc--cCCCceeeecCCCC
Confidence 2345566543 22 578899999876555444 33333333322211110 01224578999999
Q ss_pred CCc-------------------------------CCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC-----------
Q 015125 301 TGS-------------------------------TQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD----------- 338 (413)
Q Consensus 301 ~~R-------------------------------~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g----------- 338 (413)
++| +.+.++.+..++++|++++||+||+|+||||+|+|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~~~~~~~~ 387 (539)
T TIGR02456 308 ELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGDNIWLGDRN 387 (539)
T ss_pred ccCccccChhhhhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcCCCccCCCc
Confidence 954 33444445567899999999999999999999975
Q ss_pred -------Cc---------------------------------------hhHHHHHHHHHHHHHhCcccCCCCeEEEEec-
Q 015125 339 -------WG---------------------------------------DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQ- 371 (413)
Q Consensus 339 -------w~---------------------------------------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~- 371 (413)
|+ .+++.++|+||+||+++|+|..|+++.+..+
T Consensus 388 ~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~~~~l~~~~ 467 (539)
T TIGR02456 388 GVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGSLTFLPTGN 467 (539)
T ss_pred CccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCceEEEecCC
Confidence 21 1378999999999999999999999998764
Q ss_pred CCEEEEEE---CCEEEEEEcCCCCC-------C--CCCCcEEeeeCCce
Q 015125 372 SNLYSAII---GDKVCMKIGDGSWC-------P--AGKEWTLATSGHKY 408 (413)
Q Consensus 372 ~~~~~~~r---~~~~lv~lnn~~~~-------~--~~~~~~~~~s~~~~ 408 (413)
+++++|.| ++.++|++|++... + .++.+.+++++..+
T Consensus 468 ~~v~~f~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~dl~~~~~~ 516 (539)
T TIGR02456 468 RRVLAFLREYEGERVLCVFNFSRNPQAVELDLSEFAGRVPVELIGGAPF 516 (539)
T ss_pred CCEEEEEEEcCCcEEEEEEeCCCCCEEeeccccccccCcceecccCCcc
Confidence 46999998 56788888885421 1 13355666666543
No 8
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=9.4e-60 Score=485.55 Aligned_cols=347 Identities=18% Similarity=0.238 Sum_probs=255.6
Q ss_pred eeEEEeeecCCCCC-----ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH-----DWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.||||+|.+.|++. |||+||+++|+||++||||+|||+||+++++ .+||++.||++|+|+|||+++|++||++|
T Consensus 5 ~v~Y~i~~~~f~~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~a 84 (543)
T TIGR02403 5 KVIYQIYPKSFYDSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEA 84 (543)
T ss_pred CEEEEEEhHHHhcCCCCCccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHH
Confidence 69999999988753 7999999999999999999999999999986 47999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCCC------Ccccc---cCCC----CCCCCCCCeeccCCCCCC------CcCCCCCCCC
Q 015125 100 KQHKVRAMADIVINHRVGTTQGHG------GKYNR---YDGI----PLSWDEHAVTSCTGGLGN------GSTGDNFHGV 160 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~~------~~y~~---~~~~----~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 160 (413)
|++||+||+|+|+||++.+|+|+. ++|.+ +.+. +.+|... . -...|.. .+.......+
T Consensus 85 h~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~--~-~~~~w~~~~~~~~~y~~~f~~~~ 161 (543)
T TIGR02403 85 KKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSK--F-GGSAWEYFGDTGQYYLHLFDKTQ 161 (543)
T ss_pred HHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCccccc--C-CCcCccccCCCCceEEeccCCcC
Confidence 999999999999999999998653 23322 1110 0111110 0 0011110 0111122579
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc-----------------------HHHHHHHHHhhC---CCe
Q 015125 161 PNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-----------------------AKYVKEYIEGAR---PIF 214 (413)
Q Consensus 161 ~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~-----------------------~~~~~~~~~~~~---~~~ 214 (413)
||||++||+||++|++++++|+ ++||||||||+|++++ .+||+++.+.++ +.|
T Consensus 162 pdln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (543)
T TIGR02403 162 ADLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDNDSV 240 (543)
T ss_pred CccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccCCeE
Confidence 9999999999999999999999 6899999999999985 468999987763 378
Q ss_pred EEEcccCCCCCCCCCCCCccchhhHhHhhhhcc-CCCcccccCccchHHHHHHhcc--------chhhhhhhcCCCCCcc
Q 015125 215 SVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAVKG--------QFWRLRDAQGKPPGVM 285 (413)
Q Consensus 215 ~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~df~~~~~l~~~~~g--------~~~~~~~~~~~~~~~~ 285 (413)
+|||+|... ...+..|... ++.++++|+|.. .......+ +...+..........+
T Consensus 241 lvgE~~~~~--------------~~~~~~y~~~~~~~~d~~~nf~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 304 (543)
T TIGR02403 241 TVGEMSSTT--------------IENCIRYSNPENKELSMVFTFHH--LKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGM 304 (543)
T ss_pred EEEEeCCCC--------------HHHHHhhhCCCCCeeCeEEChhh--hhchhccccccccCCCCHHHHHHHHHHHHHhc
Confidence 999999642 2445566532 345778888752 11121111 1112222111000000
Q ss_pred cccCCcceecccCCCCCcCCCCCCCCh----hHHHHHHHHHhcCCCeeEEecCcccCCc---------------------
Q 015125 286 GWWPSRAVTFLDNHDTGSTQAHWPFPS----NHIMEGYAYILMHPGIPSVFYDHFYDWG--------------------- 340 (413)
Q Consensus 286 ~~~p~~~v~flenHD~~R~~~~~~~~~----~~~~la~a~ll~~pGiP~Iy~G~E~gw~--------------------- 340 (413)
.......++|++|||++|+.+.++... ...+++++++||+||+|+||||||+|..
T Consensus 305 ~~~~~~~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~ 384 (543)
T TIGR02403 305 QAGGGWNALFWNNHDQPRAVSRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDI 384 (543)
T ss_pred cccCcceeeecCCCChhhHHHhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHH
Confidence 001224567999999999998886432 2578888999999999999999997522
Q ss_pred --------------------------------------------------------------hhHHHHHHHHHHHHHhCc
Q 015125 341 --------------------------------------------------------------DSIHNQIVKLMDVRRQQD 358 (413)
Q Consensus 341 --------------------------------------------------------------~~l~~~i~~L~~lR~~~p 358 (413)
.++++++|+||+||+++|
T Consensus 385 ~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~ 464 (543)
T TIGR02403 385 LLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEP 464 (543)
T ss_pred HhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcc
Confidence 248899999999999999
Q ss_pred ccCCCCeEEEEecC-CEEEEEE---CCEEEEEEcCCCC
Q 015125 359 IHSRSSIKILEAQS-NLYSAII---GDKVCMKIGDGSW 392 (413)
Q Consensus 359 ~l~~G~~~~~~~~~-~~~~~~r---~~~~lv~lnn~~~ 392 (413)
+|..|+++.+..++ ++++|.| +++++|++|.++.
T Consensus 465 aL~~G~~~~~~~~~~~v~a~~R~~~~~~~lVv~N~s~~ 502 (543)
T TIGR02403 465 VITDGDYQFLLPDDPSVWAYTRTYKNQKLLVINNFYGE 502 (543)
T ss_pred cccCccEEEeecCCCcEEEEEEEcCCcEEEEEEECCCC
Confidence 99999999987664 7999998 5678888888653
No 9
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=6.3e-59 Score=478.77 Aligned_cols=363 Identities=16% Similarity=0.196 Sum_probs=259.0
Q ss_pred eeEEEeeecCCCC-----CccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCK-----HDWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~-----~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.||||+|..+|.+ .|||+||+++|+||++||||+|||+||++++. .|||+|.||++|||+|||+++|++||++|
T Consensus 11 ~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~ 90 (551)
T PRK10933 11 GVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQA 90 (551)
T ss_pred CeEEEEEchHhhcCCCCCCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHH
Confidence 6999999998865 37999999999999999999999999999876 68999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCCCC------ccccc---CCC-----CCCCCCC---CeeccCCCCCCCcCCCCCCCCCc
Q 015125 100 KQHKVRAMADIVINHRVGTTQGHGG------KYNRY---DGI-----PLSWDEH---AVTSCTGGLGNGSTGDNFHGVPN 162 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~~~------~y~~~---~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d 162 (413)
|++||+||+|+|+||++.+|+|+.. +|.++ .+. +..|... ....+....+..........+||
T Consensus 91 h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pd 170 (551)
T PRK10933 91 KSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQAD 170 (551)
T ss_pred HHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecccccCCc
Confidence 9999999999999999999987532 23221 110 0111100 00000000000111112357999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcH-----------------------HHHHHHHHhhC---CCeEE
Q 015125 163 IDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA-----------------------KYVKEYIEGAR---PIFSV 216 (413)
Q Consensus 163 ln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~-----------------------~~~~~~~~~~~---~~~~v 216 (413)
||++||+||++|++++++|+ ++||||||+|+|++++. +||+++.+.+. ..++|
T Consensus 171 Ln~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 249 (551)
T PRK10933 171 LNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRDVFTPRGLMTV 249 (551)
T ss_pred cCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHHhhcccCcEEE
Confidence 99999999999999999999 79999999999998863 57888876542 26789
Q ss_pred EcccCCCCCCCCCCCCccchhhHhHhhhhcc-CCCcccccCccchHHHHHHhccch--------hhhhhhcCCCCCcccc
Q 015125 217 GEYWDSCNYNSHGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAVKGQF--------WRLRDAQGKPPGVMGW 287 (413)
Q Consensus 217 gE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~df~~~~~l~~~~~g~~--------~~~~~~~~~~~~~~~~ 287 (413)
||+|... ...+..|... +..+++.|+|.. .......+.. ..+..........+.
T Consensus 250 gE~~~~~--------------~~~~~~y~~~~~~~~~~~fnf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 312 (551)
T PRK10933 250 GEMSSTS--------------LEHCQRYAALTGSELSMTFNFHH--LKVDYPNGEKWTLAKPDFVALKTLFRHWQQGMH- 312 (551)
T ss_pred EeecCCC--------------HHHHHHhhcccCCeeeeEecHHH--hhhhhccCCcccccccCHHHHHHHHHHHHHhhc-
Confidence 9998642 2345555432 334667777742 1222222211 111111110000010
Q ss_pred cCCcceecccCCCCCcCCCCCCCChh----HHHHHHHHHhcCCCeeEEecCcccCCc-----------------------
Q 015125 288 WPSRAVTFLDNHDTGSTQAHWPFPSN----HIMEGYAYILMHPGIPSVFYDHFYDWG----------------------- 340 (413)
Q Consensus 288 ~p~~~v~flenHD~~R~~~~~~~~~~----~~~la~a~ll~~pGiP~Iy~G~E~gw~----------------------- 340 (413)
.......|++|||++|+.++++.+.. .++++++++||+||+|+||||||+|..
T Consensus 313 ~~~~~~~fl~NHD~~R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~ 392 (551)
T PRK10933 313 NVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELR 392 (551)
T ss_pred ccCeeccccCCCCcccHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHh
Confidence 11245689999999999998864422 367788899999999999999997532
Q ss_pred ------------------------------------------------------------hhHHHHHHHHHHHHHhCccc
Q 015125 341 ------------------------------------------------------------DSIHNQIVKLMDVRRQQDIH 360 (413)
Q Consensus 341 ------------------------------------------------------------~~l~~~i~~L~~lR~~~p~l 360 (413)
.+++.++|+||+||+++|+|
T Consensus 393 ~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL 472 (551)
T PRK10933 393 NDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVL 472 (551)
T ss_pred hcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhh
Confidence 13789999999999999999
Q ss_pred CCCCeEEEEe-cCCEEEEEE---CCEEEEEEcCCCCC-----C-CCCCcEEeeeCC
Q 015125 361 SRSSIKILEA-QSNLYSAII---GDKVCMKIGDGSWC-----P-AGKEWTLATSGH 406 (413)
Q Consensus 361 ~~G~~~~~~~-~~~~~~~~r---~~~~lv~lnn~~~~-----~-~~~~~~~~~s~~ 406 (413)
..|+++.+.. ++.+++|.| ++.++|++|.++.. + ..+.|++++++.
T Consensus 473 ~~G~~~~~~~~~~~v~af~R~~~~~~~lvv~N~s~~~~~~~~~~~~~~~~~~l~~~ 528 (551)
T PRK10933 473 TWGDYQDLLPNHPSLWCYRREWQGQTLLVIANLSREPQPWQPGQMRGNWQLLMHNY 528 (551)
T ss_pred ccceeEEeccCCCcEEEEEEEcCCcEEEEEEECCCCCeeeecCcccCCceEEeecC
Confidence 9999998764 457999998 56788899986532 1 124666777663
No 10
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=1.1e-55 Score=454.03 Aligned_cols=330 Identities=17% Similarity=0.191 Sum_probs=243.9
Q ss_pred CceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 24 GREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
...+||++..++|+..|+|+||+++|||||+||||+||||||++++ .+|||++.||++|+++||++++||+||++||+
T Consensus 92 ~~~viYE~hv~~f~~~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~ 171 (542)
T TIGR02402 92 EEAVIYELHVGTFTPEGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHG 171 (542)
T ss_pred cccEEEEEEhhhcCCCCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHH
Confidence 4479999999999999999999999999999999999999998876 57999999999999999999999999999999
Q ss_pred cCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCH---HHHHHHHHHH
Q 015125 102 HKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQH---FVRKDIIAWL 178 (413)
Q Consensus 102 ~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~---~vr~~l~~~~ 178 (413)
+||+||||+|+||++.++.... .+. +.+.. .... ...+++|+++| +||++|++++
T Consensus 172 ~Gi~VilD~V~NH~~~~~~~~~----~~~---~y~~~----~~~~-----------~wg~~~n~~~~~~~~vr~~i~~~~ 229 (542)
T TIGR02402 172 LGLGVILDVVYNHFGPEGNYLP----RYA---PYFTD----RYST-----------PWGAAINFDGPGSDEVRRYILDNA 229 (542)
T ss_pred CCCEEEEEEccCCCCCcccccc----ccC---ccccC----CCCC-----------CCCCccccCCCcHHHHHHHHHHHH
Confidence 9999999999999987653211 111 01110 0011 11357999999 9999999999
Q ss_pred HHHHhhcCCCeEeecccCCCc----HHHHHHHHHhhC---C----CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhcc
Q 015125 179 RWLRNTVGFQDFRFDFARGYS----AKYVKEYIEGAR---P----IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDG 247 (413)
Q Consensus 179 ~~w~~~~gvDGfR~D~a~~i~----~~~~~~~~~~~~---~----~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (413)
++|+++|||||||+|++++++ .+||+++.+.++ | .++|||.|.+.+. .+......
T Consensus 230 ~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~--------------~~~~~~~~ 295 (542)
T TIGR02402 230 LYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLNDPS--------------LVTPREDG 295 (542)
T ss_pred HHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCc--------------ccccccCC
Confidence 999999999999999998885 459988877654 3 5789998854220 00000011
Q ss_pred CCCcccccCccchHHHHHHhccch-----------hhhhhhcCC-------CCCc----c----c-ccCCcceecccCCC
Q 015125 248 TGQLSAAFDFTTKGILQEAVKGQF-----------WRLRDAQGK-------PPGV----M----G-WWPSRAVTFLDNHD 300 (413)
Q Consensus 248 ~~~~~~~~df~~~~~l~~~~~g~~-----------~~~~~~~~~-------~~~~----~----~-~~p~~~v~flenHD 300 (413)
+.++++.|+..++..++..+.|.. ..+...+.. .... . . ..+.+.++|++|||
T Consensus 296 ~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD 375 (542)
T TIGR02402 296 GYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYDGEYSPFRGRPHGRPSGDLPPHRFVVFIQNHD 375 (542)
T ss_pred ccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccCccccccccccCCCCCCCCCHHHEEEEccCcc
Confidence 123456666666666666554321 111111100 0000 0 0 12346899999999
Q ss_pred C-------CcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC-----------------------------------
Q 015125 301 T-------GSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD----------------------------------- 338 (413)
Q Consensus 301 ~-------~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g----------------------------------- 338 (413)
+ .|+...+ +..+.++|.+++||+||+||||||||+|
T Consensus 376 ~~gn~~~~~Rl~~~~--~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~ 453 (542)
T TIGR02402 376 QIGNRALGERLSQLL--SPGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDP 453 (542)
T ss_pred cccccchhhhhhhcC--CHHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhccccc
Confidence 8 5777655 3478999999999999999999999964
Q ss_pred ------------------Cc-------hhHHHHHHHHHHHHHhCcccCCCCeEEEEe----cCCEEEEEE-CCEEEEEEc
Q 015125 339 ------------------WG-------DSIHNQIVKLMDVRRQQDIHSRSSIKILEA----QSNLYSAII-GDKVCMKIG 388 (413)
Q Consensus 339 ------------------w~-------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~----~~~~~~~~r-~~~~lv~ln 388 (413)
|. .++++++|+||+|||++|+|+.++.+.+.. ++.++++.. +++++|++|
T Consensus 454 ~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N 533 (542)
T TIGR02402 454 EDVPDPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAAN 533 (542)
T ss_pred ccCCCCCchhhHhhccCCcccccccchHHHHHHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEEECCCeEEEEEe
Confidence 21 248899999999999999998887554433 456777766 567888888
Q ss_pred CCC
Q 015125 389 DGS 391 (413)
Q Consensus 389 n~~ 391 (413)
.++
T Consensus 534 ~~~ 536 (542)
T TIGR02402 534 LST 536 (542)
T ss_pred CCC
Confidence 865
No 11
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=7.8e-55 Score=454.71 Aligned_cols=364 Identities=17% Similarity=0.211 Sum_probs=255.1
Q ss_pred ccCCceeEEEeeecCCCC--------CccHHHHHhh-----------hhhHHHcCCCEEEcCCCCCCCC----------C
Q 015125 21 IRNGREILFQGFNWESCK--------HDWWRNLERK-----------VPDISKSGFTSVWLPPATHSFA----------P 71 (413)
Q Consensus 21 ~~~~~~~i~~~f~~~~~~--------~g~~~gi~~~-----------L~yLk~lGv~~I~L~Pi~~~~~----------~ 71 (413)
.+....+||++..++|+. .|+|.+++++ |+|||+||||+||||||+++.+ .
T Consensus 123 ~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~ 202 (605)
T TIGR02104 123 ENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYN 202 (605)
T ss_pred CChhHcEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCC
Confidence 334457999999998875 4788887765 9999999999999999998763 4
Q ss_pred CCCCcccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeec
Q 015125 72 EGYLPQNLYSLNSSYGS--------EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTS 143 (413)
Q Consensus 72 ~gY~~~d~~~id~~~Gt--------~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 143 (413)
|||++.||++++++||+ .+|||+||++||++||+||||+|+||++.... + +|.+..+.|. ..
T Consensus 203 wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~---~---~f~~~~~~~~----~~ 272 (605)
T TIGR02104 203 WGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREE---S---PFEKTVPGYY----YR 272 (605)
T ss_pred CCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCC---C---cccCCCCCee----EE
Confidence 99999999999999987 48999999999999999999999999985311 1 1111000110 00
Q ss_pred cCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEcc
Q 015125 144 CTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEY 219 (413)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~ 219 (413)
.+..+... .......++|+++|+||++|++++++|++++||||||+|++++++.+||+++.++++ | .+++||.
T Consensus 273 -~~~~g~~~--~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~ 349 (605)
T TIGR02104 273 -YNEDGTLS--NGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPNILLYGEG 349 (605)
T ss_pred -ECCCCCcc--CCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 00011000 011223589999999999999999999999999999999999999999999988765 3 6789999
Q ss_pred cCCCCCCCCCCCCccchhhHhHhhhhccC-CCcccccCccchHHHHHHh---------ccc---hhhhhhhcCCCCC---
Q 015125 220 WDSCNYNSHGLDYNQDSHRQRIINWIDGT-GQLSAAFDFTTKGILQEAV---------KGQ---FWRLRDAQGKPPG--- 283 (413)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~df~~~~~l~~~~---------~g~---~~~~~~~~~~~~~--- 283 (413)
|...+ .... .......+.. -...+.|++.++..++... .|. ...+...+.....
T Consensus 350 w~~~~------~~~~----~~~~~~~~~~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~ 419 (605)
T TIGR02104 350 WDLGT------PLPP----EQKATKANAYQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDA 419 (605)
T ss_pred CCCCC------Ccch----hhhhhhhccCCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcc
Confidence 97532 0000 0000000000 0124678888877776321 222 1223322221100
Q ss_pred --cccccCCcceecccCCCCCcCCCCCC----C-----ChhHHHHHHHHHhcCCCeeEEecCcccC--------------
Q 015125 284 --VMGWWPSRAVTFLDNHDTGSTQAHWP----F-----PSNHIMEGYAYILMHPGIPSVFYDHFYD-------------- 338 (413)
Q Consensus 284 --~~~~~p~~~v~flenHD~~R~~~~~~----~-----~~~~~~la~a~ll~~pGiP~Iy~G~E~g-------------- 338 (413)
.....|..+|+|++|||+.|+...+. . ...++++|++++||+||+||||||||+|
T Consensus 420 ~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g~~n~y~~~d 499 (605)
T TIGR02104 420 VKPSALDPSQSINYVECHDNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQGDENSYNSPD 499 (605)
T ss_pred cccccCChhheEEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCCCCCCccCCC
Confidence 01224568899999999998744321 1 1357899999999999999999999974
Q ss_pred ------Cc-----hhHHHHHHHHHHHHHhCcccCCCCeE-------EEEe-cCCEEEEEEC--------CEEEEEEcCCC
Q 015125 339 ------WG-----DSIHNQIVKLMDVRRQQDIHSRSSIK-------ILEA-QSNLYSAIIG--------DKVCMKIGDGS 391 (413)
Q Consensus 339 ------w~-----~~l~~~i~~L~~lR~~~p~l~~G~~~-------~~~~-~~~~~~~~r~--------~~~lv~lnn~~ 391 (413)
|+ .++++++|+|++||+++|+|+.|+.. ++.. ++.+++|.|. +.++|++|.+.
T Consensus 500 ~~~~ldW~~~~~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llVv~N~s~ 579 (605)
T TIGR02104 500 SINQLDWDRKATFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIVIHNANP 579 (605)
T ss_pred cccccCccccccchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEEEEEeCCC
Confidence 32 36899999999999999999998753 2322 3579999882 25788898864
Q ss_pred CC-----CCCCCcEEeeeCCc
Q 015125 392 WC-----PAGKEWTLATSGHK 407 (413)
Q Consensus 392 ~~-----~~~~~~~~~~s~~~ 407 (413)
.. |..+.|+.++++..
T Consensus 580 ~~~~v~lp~~~~w~~~~~~~~ 600 (605)
T TIGR02104 580 EPVDIQLPSDGTWNVVVDNKN 600 (605)
T ss_pred CCeEEECCCCCCEEEEECCCc
Confidence 32 44578999888754
No 12
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=5.1e-54 Score=451.11 Aligned_cols=353 Identities=15% Similarity=0.194 Sum_probs=249.5
Q ss_pred CceeEEEeeecCCCCC-----ccHHHHHhhh-hhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHH
Q 015125 24 GREILFQGFNWESCKH-----DWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKAL 95 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~-----g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~L 95 (413)
...+||++..+++..+ |+|++|+++| ||||+||||+||||||++++ .+|||++.|||+|+|+|||+++||+|
T Consensus 146 ~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~l 225 (633)
T PRK12313 146 RPISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYL 225 (633)
T ss_pred CCceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHH
Confidence 3368999999987765 7999999995 99999999999999999987 57999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHH
Q 015125 96 LHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDII 175 (413)
Q Consensus 96 v~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~ 175 (413)
|++||++||+||||+|+||++.++... ..|.+ .....+.++.. .....| +.++||+.||+||++|+
T Consensus 226 v~~~H~~Gi~VilD~V~nH~~~~~~~~----~~~~~-------~~~~~~~~~~~--~~~~~w-~~~~~n~~~~~vr~~l~ 291 (633)
T PRK12313 226 VDALHQNGIGVILDWVPGHFPKDDDGL----AYFDG-------TPLYEYQDPRR--AENPDW-GALNFDLGKNEVRSFLI 291 (633)
T ss_pred HHHHHHCCCEEEEEECCCCCCCCcccc----cccCC-------CcceeecCCCC--CcCCCC-CCcccCCCCHHHHHHHH
Confidence 999999999999999999999865321 11211 00011111000 000012 24689999999999999
Q ss_pred HHHHHHHhhcCCCeEeecccCCC-----------------------cHHHHHHHHHhhC---C-CeEEEcccCCCCCCCC
Q 015125 176 AWLRWLRNTVGFQDFRFDFARGY-----------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSH 228 (413)
Q Consensus 176 ~~~~~w~~~~gvDGfR~D~a~~i-----------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~ 228 (413)
+++++|+++|||||||+|++.++ +.+||+++.+.++ | .++|||.+...+
T Consensus 292 ~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~---- 367 (633)
T PRK12313 292 SSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWP---- 367 (633)
T ss_pred HHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCc----
Confidence 99999999999999999988644 2579999988764 4 778999775421
Q ss_pred CCCCccchhhHhHhh-hhccCCCcccccCccchHHHHHHhccc-hhhhhhhcCCC-CCcccccCCcceecccCCCCC---
Q 015125 229 GLDYNQDSHRQRIIN-WIDGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKP-PGVMGWWPSRAVTFLDNHDTG--- 302 (413)
Q Consensus 229 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~df~~~~~l~~~~~g~-~~~~~~~~~~~-~~~~~~~p~~~v~flenHD~~--- 302 (413)
.+.. ....+-+++..++..+...+...+..+ ..+-. ..... ........ ...++++|||+.
T Consensus 368 -----------~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-e~~~l~~sHD~~~~g 434 (633)
T PRK12313 368 -----------KVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKY-HHNLLTFSFMYAFS-ENFVLPFSHDEVVHG 434 (633)
T ss_pred -----------cccccccCCCCCcCceeCcHHHHHHHHHhhhCcccccc-ccccchHHHhhhhh-cccccCCCCcccccC
Confidence 1111 111222455666665555555554221 11000 00000 00000001 122466899994
Q ss_pred --cCCCCCCCCh----hHHHHHHHHHhcCCCeeEEecCcccC------------Cc-------hhHHHHHHHHHHHHHhC
Q 015125 303 --STQAHWPFPS----NHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRRQQ 357 (413)
Q Consensus 303 --R~~~~~~~~~----~~~~la~a~ll~~pGiP~Iy~G~E~g------------w~-------~~l~~~i~~L~~lR~~~ 357 (413)
|+...+..+. .++|++++++||+||+||||||+|+| |. +++.+++|+|++||+++
T Consensus 435 ~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~ 514 (633)
T PRK12313 435 KKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKHDESLEWHLLEDPMNAGMQRFTSDLNQLYKDE 514 (633)
T ss_pred CccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCccCCCCccccCChhHHHHHHHHHHHHHHHHhC
Confidence 5555544333 56899999999999999999999986 42 36999999999999999
Q ss_pred cccCC-----CCeEEEEec---CCEEEEEE-C----CEEEEEEcCCCC--------CCCCCCcEEeeeCCc
Q 015125 358 DIHSR-----SSIKILEAQ---SNLYSAII-G----DKVCMKIGDGSW--------CPAGKEWTLATSGHK 407 (413)
Q Consensus 358 p~l~~-----G~~~~~~~~---~~~~~~~r-~----~~~lv~lnn~~~--------~~~~~~~~~~~s~~~ 407 (413)
|+|+. ++++.+..+ +++++|.| . +.++||+|.++. .|.++.|+++|+...
T Consensus 515 paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~~~~~~y~i~~p~~g~~~~ilnsd~ 585 (633)
T PRK12313 515 PALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTPVEREDYRIGVPVAGIYEEILNTDS 585 (633)
T ss_pred hHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCCCcccceeECCCCCCeEEEEEcCCc
Confidence 99974 456766653 36999998 2 458888998642 244578999987654
No 13
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=1.5e-53 Score=444.79 Aligned_cols=353 Identities=13% Similarity=0.148 Sum_probs=250.7
Q ss_pred eeEEEeeecCCCCCccHHHHHhhh-hhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 26 EILFQGFNWESCKHDWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
.+||++-.+++...|+|++|+++| ||||+||||+||||||++++ .+|||+++|||+|+++|||+++||+||++||++
T Consensus 139 ~~iYe~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~ 218 (613)
T TIGR01515 139 VSIYELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQA 218 (613)
T ss_pred ceEEEEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHC
Confidence 579999999999999999999997 99999999999999999986 479999999999999999999999999999999
Q ss_pred CCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 015125 103 KVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR 182 (413)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~ 182 (413)
||+||||+|+||++.++... ..|.+.+ .|. ..++.. ... ...+.+++|+++|+||++|++++++|+
T Consensus 219 Gi~VilD~V~NH~~~~~~~~----~~~~~~~-~y~------~~~~~~--~~~-~~w~~~~~~~~~~~Vr~~l~~~~~~W~ 284 (613)
T TIGR01515 219 GIGVILDWVPGHFPKDDHGL----AEFDGTP-LYE------HKDPRD--GEH-WDWGTLIFDYGRPEVRNFLVANALYWA 284 (613)
T ss_pred CCEEEEEecccCcCCccchh----hccCCCc-cee------ccCCcc--CcC-CCCCCceecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999865321 1121100 010 000000 000 112467899999999999999999999
Q ss_pred hhcCCCeEeecccCCC------------------------cHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCCCcc
Q 015125 183 NTVGFQDFRFDFARGY------------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQ 234 (413)
Q Consensus 183 ~~~gvDGfR~D~a~~i------------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~~~ 234 (413)
++|||||||+|+++++ ..+||+++.+.++ | +++|||.+...+
T Consensus 285 ~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~---------- 354 (613)
T TIGR01515 285 EFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWP---------- 354 (613)
T ss_pred HHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCc----------
Confidence 9999999999998654 2579999988765 4 788999764321
Q ss_pred chhhHhHhhhhccCCCcccccCccchHHHHHHhccc-hhhhhhhcCCCCCcccccCCcceecccCCCCC-----cCCCCC
Q 015125 235 DSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG-----STQAHW 308 (413)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~-~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~-----R~~~~~ 308 (413)
.......+.+-+++..+++.++..+..++..+ ..+................ ....+++|||+. |+...+
T Consensus 355 ----~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~sHD~~~~g~~~i~~~~ 429 (613)
T TIGR01515 355 ----GVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQYHHQLITFSMLYAFS-ENFVLPLSHDEVVHGKKSLLNKM 429 (613)
T ss_pred ----cccccccCCcCCcCeeeCchHHHHHHHHHhhChhhHhhccccccHHHHHHhh-hccccCCCCCCcccCcccHHHhC
Confidence 01111222233567777777766666665222 1111100000000000001 122357889993 444444
Q ss_pred CCC----hhHHHHHHHHHhcCCCeeEEecCcccC------------Cc-------hhHHHHHHHHHHHHHhCcccCCCC-
Q 015125 309 PFP----SNHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRRQQDIHSRSS- 364 (413)
Q Consensus 309 ~~~----~~~~~la~a~ll~~pGiP~Iy~G~E~g------------w~-------~~l~~~i~~L~~lR~~~p~l~~G~- 364 (413)
..+ ..++|++++++||+||+||||||+|+| |. .++.+++|+|++||+++|+|..|+
T Consensus 430 ~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~ 509 (613)
T TIGR01515 430 PGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWNDTEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALYEHDF 509 (613)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCCCccCCCccccCcccHHHHHHHHHHHHHHhhCHHhhccCC
Confidence 322 257899999999999999999999985 32 368999999999999999997654
Q ss_pred ----eEEEEe---cCCEEEEEEC-----CEEEEEEcCCCCC--------CCCCCcEEeeeCCc
Q 015125 365 ----IKILEA---QSNLYSAIIG-----DKVCMKIGDGSWC--------PAGKEWTLATSGHK 407 (413)
Q Consensus 365 ----~~~~~~---~~~~~~~~r~-----~~~lv~lnn~~~~--------~~~~~~~~~~s~~~ 407 (413)
++.+.. ++++++|.|. +.++|++|.++.. |..+.|+++|+...
T Consensus 510 ~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~~~~~Y~i~~p~~g~~~~il~Sd~ 572 (613)
T TIGR01515 510 DPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPVVRHQYRVGVPQPGQYREVLNSDS 572 (613)
T ss_pred CCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCCCccceEeCCCCCCeEEEEEeCCh
Confidence 444543 3569999882 3588999996531 33578999887553
No 14
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=5.1e-52 Score=440.96 Aligned_cols=354 Identities=15% Similarity=0.210 Sum_probs=245.0
Q ss_pred ceeEEEeeecCCCCC------ccHHHHHhhh-hhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHH
Q 015125 25 REILFQGFNWESCKH------DWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKAL 95 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~------g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~L 95 (413)
..+||++..+++..+ |+|++|+++| ||||+||||+||||||++++ .+|||++.||++|+|+|||+++||+|
T Consensus 241 ~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~l 320 (726)
T PRK05402 241 PISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYF 320 (726)
T ss_pred CcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHH
Confidence 368999999998764 7999999996 99999999999999999876 47999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHH
Q 015125 96 LHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDII 175 (413)
Q Consensus 96 v~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~ 175 (413)
|++||++||+||||+|+||++.++... ..|.+.+....+.. ..++ ...| +..++|+.+|+||++|+
T Consensus 321 V~~~H~~Gi~VilD~V~NH~~~~~~~~----~~~~~~~~y~~~~~----~~~~-----~~~w-~~~~~n~~~~~v~~~l~ 386 (726)
T PRK05402 321 VDACHQAGIGVILDWVPAHFPKDAHGL----ARFDGTALYEHADP----REGE-----HPDW-GTLIFNYGRNEVRNFLV 386 (726)
T ss_pred HHHHHHCCCEEEEEECCCCCCCCccch----hccCCCcceeccCC----cCCc-----cCCC-CCccccCCCHHHHHHHH
Confidence 999999999999999999998865421 11211000001000 0000 0112 22478999999999999
Q ss_pred HHHHHHHhhcCCCeEeecccCCC------------------------cHHHHHHHHHhhC---C-CeEEEcccCCCCCCC
Q 015125 176 AWLRWLRNTVGFQDFRFDFARGY------------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNS 227 (413)
Q Consensus 176 ~~~~~w~~~~gvDGfR~D~a~~i------------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~ 227 (413)
+++++|++++||||||+|++.++ ..+||+++++.++ | +++|||.+...+.
T Consensus 387 ~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~-- 464 (726)
T PRK05402 387 ANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPG-- 464 (726)
T ss_pred HHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcC--
Confidence 99999999999999999987654 3579999988765 4 7789995543110
Q ss_pred CCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc-hhhhhhhcCCCCCcccccCCcceecccCCCCCc---
Q 015125 228 HGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGS--- 303 (413)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~-~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R--- 303 (413)
.......++.+++..+++.+...+...+..+ ..+....-......+.... ...++++|||+.+
T Consensus 465 ------------~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~l~~sHD~~~~g~ 531 (726)
T PRK05402 465 ------------VTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLLYAYS-ENFVLPLSHDEVVHGK 531 (726)
T ss_pred ------------ccccccCCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHhHhhh-ccccCCCCCceeeeCc
Confidence 0001111122355566655544444443211 1100000000000000011 1234678999964
Q ss_pred --CCCCCCCC----hhHHHHHHHHHhcCCCeeEEecCcccC------------Cc-------hhHHHHHHHHHHHHHhCc
Q 015125 304 --TQAHWPFP----SNHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRRQQD 358 (413)
Q Consensus 304 --~~~~~~~~----~~~~~la~a~ll~~pGiP~Iy~G~E~g------------w~-------~~l~~~i~~L~~lR~~~p 358 (413)
+...+..+ ..++|++++++||+||+||||||+|+| |+ .++.+++|+|++||+++|
T Consensus 532 ~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~ 611 (726)
T PRK05402 532 GSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWNHDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEP 611 (726)
T ss_pred ccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCCccCcCCccccCCcchHHHHHHHHHHHHHHHhCh
Confidence 33333322 246889999999999999999999975 43 369999999999999999
Q ss_pred ccCCC-----CeEEEEe---cCCEEEEEEC-----CEEEEEEcCCCC--------CCCCCCcEEeeeCCc
Q 015125 359 IHSRS-----SIKILEA---QSNLYSAIIG-----DKVCMKIGDGSW--------CPAGKEWTLATSGHK 407 (413)
Q Consensus 359 ~l~~G-----~~~~~~~---~~~~~~~~r~-----~~~lv~lnn~~~--------~~~~~~~~~~~s~~~ 407 (413)
+|+.| .++.+.. ++++++|.|. ++++||+|.++. .|.++.|++++++..
T Consensus 612 aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~~~~~y~i~~p~~g~~~~ilnsd~ 681 (726)
T PRK05402 612 ALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVVCNFTPVPRHDYRLGVPQAGRWREVLNTDA 681 (726)
T ss_pred hhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEEEeCCCCcccceEECCCCCCeEEEEEcCcc
Confidence 99865 4444543 3479999982 468899998642 245679999998764
No 15
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=3.6e-54 Score=416.17 Aligned_cols=284 Identities=22% Similarity=0.370 Sum_probs=202.2
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
|||+||++||||||+||||+|||+||++++ ++|||+|.||++|+|+|||++||++||++||++||+||+|+|+||++..
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 799999999999999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCC----------CcccccCCCCCCCCCCCeeccC--CCCCCCc-C--CCCCCCCCcCCCCCHHHHHHHHHHHHHHHh
Q 015125 119 TQGHG----------GKYNRYDGIPLSWDEHAVTSCT--GGLGNGS-T--GDNFHGVPNIDHTQHFVRKDIIAWLRWLRN 183 (413)
Q Consensus 119 ~~~~~----------~~y~~~~~~~~~~~~~~~~~~~--~~~~~~~-~--~~~~~~~~dln~~~~~vr~~l~~~~~~w~~ 183 (413)
+++++ ..|..+.+. ....+....... ..+.... . .+.+..+|+||++||+||+++++++++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~- 158 (316)
T PF00128_consen 81 HPWFQDSLNYFDNPYSDYYYWRDG-EGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI- 158 (316)
T ss_dssp SHHHHHHHTHTTSTTGTTBEEESB-TSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH-
T ss_pred cccccccccccccccccceeeccc-ccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh-
Confidence 98632 112111110 000011100000 1111111 1 24578899999999999999999999999
Q ss_pred hcCCCeEeecccCCCcHHHHHHHHHhhC----CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhc-cCCCcccccCcc
Q 015125 184 TVGFQDFRFDFARGYSAKYVKEYIEGAR----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWID-GTGQLSAAFDFT 258 (413)
Q Consensus 184 ~~gvDGfR~D~a~~i~~~~~~~~~~~~~----~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~df~ 258 (413)
+.||||||+|+|++++.++|+++.++++ ..+++||+|.... ..+..+.. ........+++.
T Consensus 159 ~~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 224 (316)
T PF00128_consen 159 EEGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPDFFLIGEVWGGDN--------------EDLRQYAYDGYFDLDSVFDFP 224 (316)
T ss_dssp HTTESEEEETTGGGSSHHHHHHHHHHHHHHHTTSEEEEEESSSSH--------------HHHHHHHHHGTTSHSEEEHHH
T ss_pred hceEeEEEEccccccchhhHHHHhhhhhhhccccceeeeeccCCc--------------cccchhhhccccccchhhccc
Confidence 7779999999999999999999998876 3788999997621 12222221 111223345555
Q ss_pred chHHHHHHh----ccc--hhhhhhhcCCCCCcccccCCcceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEe
Q 015125 259 TKGILQEAV----KGQ--FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVF 332 (413)
Q Consensus 259 ~~~~l~~~~----~g~--~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy 332 (413)
......... .++ ...+............ .+...++|++|||++|+.+.......++++|++++||+||+||||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG~P~iy 303 (316)
T PF00128_consen 225 DYGLRSSFFDFWRHGDGDASDLANWLSSWQSSYP-DPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPGIPMIY 303 (316)
T ss_dssp HHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHST-TGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSSEEEEE
T ss_pred ccccccchhhhhccccchhhhhhhhhhhhhhhhc-ccceeeecccccccccchhhhcccchHHHHHHHHHHcCCCccEEE
Confidence 433333222 111 1122211110000011 134789999999999988877644448999999999999999999
Q ss_pred cCcccCCc
Q 015125 333 YDHFYDWG 340 (413)
Q Consensus 333 ~G~E~gw~ 340 (413)
||||+|..
T Consensus 304 ~G~E~g~~ 311 (316)
T PF00128_consen 304 YGDEIGMT 311 (316)
T ss_dssp TTGGGTBB
T ss_pred eChhccCC
Confidence 99999854
No 16
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=2.4e-51 Score=429.99 Aligned_cols=318 Identities=15% Similarity=0.219 Sum_probs=229.5
Q ss_pred CceeEEEeeecCCCCC---------ccHHHHHhh--hhhHHHcCCCEEEcCCCCCCC-----------CCCCCCcccCCC
Q 015125 24 GREILFQGFNWESCKH---------DWWRNLERK--VPDISKSGFTSVWLPPATHSF-----------APEGYLPQNLYS 81 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~---------g~~~gi~~~--L~yLk~lGv~~I~L~Pi~~~~-----------~~~gY~~~d~~~ 81 (413)
...|||++..++|+.. |+|+||+++ |+|||+||||+||||||+++. .+|||+|.|||+
T Consensus 154 ~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a 233 (688)
T TIGR02100 154 EDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFA 233 (688)
T ss_pred cccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccc
Confidence 4479999999998862 899999985 999999999999999999874 269999999999
Q ss_pred CCCCC---CCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCC-CcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC
Q 015125 82 LNSSY---GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG-GKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF 157 (413)
Q Consensus 82 id~~~---Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
|+++| |+.+|||+||++||++||+||||+|+||++..+.... ..+..+.. ..|... ..+..+ ......
T Consensus 234 ~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~--~~yy~~----~~~~~~--~~~~~~ 305 (688)
T TIGR02100 234 PEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDN--ASYYRL----QPDDKR--YYINDT 305 (688)
T ss_pred cChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCC--CcceEe----cCCCCc--eecCCC
Confidence 99999 6789999999999999999999999999998654211 11111110 011100 000000 001112
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc---------HHHHHHHHHh-hCC-CeEEEcccCCCCCC
Q 015125 158 HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS---------AKYVKEYIEG-ARP-IFSVGEYWDSCNYN 226 (413)
Q Consensus 158 ~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~---------~~~~~~~~~~-~~~-~~~vgE~~~~~~~~ 226 (413)
...+++|+++|+||++|++++++|++++||||||+|++..+. ..+++++.+. +.+ +++|||.|...+
T Consensus 306 g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE~W~~~~-- 383 (688)
T TIGR02100 306 GTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAEPWDIGP-- 383 (688)
T ss_pred CccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEeeecCCC--
Confidence 346789999999999999999999999999999999999875 3577777664 233 678999997521
Q ss_pred CCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc---hhhhhhhcCCCCCccc---ccCCcceecccCCC
Q 015125 227 SHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVMG---WWPSRAVTFLDNHD 300 (413)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~~~---~~p~~~v~flenHD 300 (413)
..+. +..+ ....+.|+..++..++..++|+ ...+...+........ ..|..+|||+++||
T Consensus 384 ---~~~~-------~~~~----~~~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~~HD 449 (688)
T TIGR02100 384 ---GGYQ-------VGNF----PPGWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRPWASINFVTAHD 449 (688)
T ss_pred ---Cccc-------ccCC----CCceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCcCEEEEEEeCCC
Confidence 0000 0000 0123667888888888887654 2344443332111111 23568999999999
Q ss_pred CCcCCCCC---------C-C---------------------C-------hhHHHHHHHHHhcCCCeeEEecCcccC----
Q 015125 301 TGSTQAHW---------P-F---------------------P-------SNHIMEGYAYILMHPGIPSVFYDHFYD---- 338 (413)
Q Consensus 301 ~~R~~~~~---------~-~---------------------~-------~~~~~la~a~ll~~pGiP~Iy~G~E~g---- 338 (413)
+.++...+ + + . ..++|++++++||+||+||||||||++
T Consensus 450 ~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g~t~~ 529 (688)
T TIGR02100 450 GFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFGRTQQ 529 (688)
T ss_pred CchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhccCCC
Confidence 97733210 0 0 0 246899999999999999999999974
Q ss_pred ----------------Cc-----hhHHHHHHHHHHHHHhCcccCCCCe
Q 015125 339 ----------------WG-----DSIHNQIVKLMDVRRQQDIHSRSSI 365 (413)
Q Consensus 339 ----------------w~-----~~l~~~i~~L~~lR~~~p~l~~G~~ 365 (413)
|+ .+++.++|+||+|||++|+|+.+.+
T Consensus 530 G~~n~y~~~~~~~~~dW~~~~~~~~l~~~~k~Li~lRk~~~~l~~~~~ 577 (688)
T TIGR02100 530 GNNNAYCQDNEIGWVDWSLDEGDDELLAFTKKLIALRKAHPVLRRERF 577 (688)
T ss_pred CCCCCccCCCcccccCcccccccHHHHHHHHHHHHHHHhCchhccccc
Confidence 43 4799999999999999999998754
No 17
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1e-50 Score=421.60 Aligned_cols=351 Identities=15% Similarity=0.139 Sum_probs=248.7
Q ss_pred eeEEEeeecCCCCC-----ccHHHHHhhh-hhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH-----DWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLH 97 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-----g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~ 97 (413)
.+||++-..++... |+|++++++| +|||+||||+|+||||.+++ .+|||++.+||+++++||++++||+||+
T Consensus 145 ~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~ 224 (639)
T PRK14706 145 ISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVN 224 (639)
T ss_pred cEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHH
Confidence 68999999988653 4899999997 89999999999999999875 4799999999999999999999999999
Q ss_pred HHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHH
Q 015125 98 KMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAW 177 (413)
Q Consensus 98 ~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~ 177 (413)
+||++||+||||+|+||++.+..+. ..|.+ .+...+.++.. .....|.. ..+|+.+|+||++|+++
T Consensus 225 ~~H~~gi~VilD~v~nH~~~~~~~l----~~~dg-------~~~y~~~~~~~--g~~~~w~~-~~~~~~~~eVr~~l~~~ 290 (639)
T PRK14706 225 HLHGLGIGVILDWVPGHFPTDESGL----AHFDG-------GPLYEYADPRK--GYHYDWNT-YIFDYGRNEVVMFLIGS 290 (639)
T ss_pred HHHHCCCEEEEEecccccCcchhhh----hccCC-------CcceeccCCcC--CcCCCCCC-cccCCCCHHHHHHHHHH
Confidence 9999999999999999999865321 01111 11111111000 00111222 24899999999999999
Q ss_pred HHHHHhhcCCCeEeecccCCC----------------------cHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCC
Q 015125 178 LRWLRNTVGFQDFRFDFARGY----------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLD 231 (413)
Q Consensus 178 ~~~w~~~~gvDGfR~D~a~~i----------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~ 231 (413)
+++|+++|||||||+|++.+| ...||+++.+.++ | +++|||.|.+.+
T Consensus 291 ~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~------- 363 (639)
T PRK14706 291 ALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFP------- 363 (639)
T ss_pred HHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCc-------
Confidence 999999999999999998886 2478998887765 4 789999886522
Q ss_pred CccchhhHhHhhhhccCCCcccccCccchHHHHHHhc-cchhhhhhhcCCCCCccc-ccCCcceecccCCCCCcCCC--C
Q 015125 232 YNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK-GQFWRLRDAQGKPPGVMG-WWPSRAVTFLDNHDTGSTQA--H 307 (413)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~-g~~~~~~~~~~~~~~~~~-~~p~~~v~flenHD~~R~~~--~ 307 (413)
.+......+-+++..++..+...+.+.+. ...++... ... .+... ........+++|||+.+... .
T Consensus 364 --------~v~~~~~~G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~-~~~-lt~~~~y~~~e~~il~~SHDev~~~k~sl 433 (639)
T PRK14706 364 --------GVTVPTPYGLGFDYKWAMGWMNDTLAYFEQDPLWRKYH-HHK-LTFFNVYRTSENYVLAISHDEVVHLKKSM 433 (639)
T ss_pred --------CcccccCCCCccccEeccHHHHHHHHHhccCchhhhhc-hhc-cchhhhhhccccEecCCCCccccCCccch
Confidence 11111112335667777666655555442 22222111 100 01101 11111223789999988532 1
Q ss_pred ---CCCC----hhHHHHHHHHHhcCCCeeEEecCcccC------------Cc-------hhHHHHHHHHHHHHHhCcccC
Q 015125 308 ---WPFP----SNHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRRQQDIHS 361 (413)
Q Consensus 308 ---~~~~----~~~~~la~a~ll~~pGiP~Iy~G~E~g------------w~-------~~l~~~i~~L~~lR~~~p~l~ 361 (413)
...+ ..++++++++++|+||+||||||+|+| |. +.+.+++|+|++||+++|+|.
T Consensus 434 ~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~ 513 (639)
T PRK14706 434 VMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWNHDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWH 513 (639)
T ss_pred HhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 1111 246899999999999999999999987 32 248899999999999999998
Q ss_pred CCC-----eEEEEe---cCCEEEEEEC-----CEEEEEEcCCCC--------CCCCCCcEEeeeCCc
Q 015125 362 RSS-----IKILEA---QSNLYSAIIG-----DKVCMKIGDGSW--------CPAGKEWTLATSGHK 407 (413)
Q Consensus 362 ~G~-----~~~~~~---~~~~~~~~r~-----~~~lv~lnn~~~--------~~~~~~~~~~~s~~~ 407 (413)
.|+ ++.+.. ++++++|.|. +.++||+|.++. +|..+.|+++|+...
T Consensus 514 ~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~~~~~~y~ig~p~~g~~~~i~nsd~ 580 (639)
T PRK14706 514 RGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTPVYREQYRIGVPQGGEYRVLLSTDD 580 (639)
T ss_pred hCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCCCCcCCeEECCCCCCeEEEEEcCCc
Confidence 775 444433 3579999992 238899999663 256789999987653
No 18
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.2e-50 Score=421.64 Aligned_cols=357 Identities=16% Similarity=0.232 Sum_probs=245.1
Q ss_pred cccccCCceeEEEeeecCCCC---------CccHHHHHh--hhhhHHHcCCCEEEcCCCCCCC-----------CCCCCC
Q 015125 18 GAVIRNGREILFQGFNWESCK---------HDWWRNLER--KVPDISKSGFTSVWLPPATHSF-----------APEGYL 75 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~---------~g~~~gi~~--~L~yLk~lGv~~I~L~Pi~~~~-----------~~~gY~ 75 (413)
+|..+....|||++..++|+. .|+|+++++ +|+|||+||||+||||||+++. .+|||+
T Consensus 143 ~p~~~~~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd 222 (658)
T PRK03705 143 PPRTPWGSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYN 222 (658)
T ss_pred CCCCCccccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcc
Confidence 344444457999999999875 289999997 5999999999999999999864 469999
Q ss_pred cccCCCCCCCCCCH-----HHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCC---CCCCCCCCCeeccCCC
Q 015125 76 PQNLYSLNSSYGSE-----HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG---IPLSWDEHAVTSCTGG 147 (413)
Q Consensus 76 ~~d~~~id~~~Gt~-----~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~---~~~~~~~~~~~~~~~~ 147 (413)
|.|||+|+++|||. +|||+||++||++||+||||+|+||++.... .+.+..+.+ ....|.. .++
T Consensus 223 ~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~--~~~~~~~~~~d~~~yy~~~------~~g 294 (658)
T PRK03705 223 PLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDL--DGPTLSLRGIDNRSYYWIR------EDG 294 (658)
T ss_pred cccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCC--CCcchhcccCCCccceEEC------CCC
Confidence 99999999999995 7999999999999999999999999997421 111111111 0011111 011
Q ss_pred CCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc--HHHHHH--HHHhhC------CCeEEE
Q 015125 148 LGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS--AKYVKE--YIEGAR------PIFSVG 217 (413)
Q Consensus 148 ~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~--~~~~~~--~~~~~~------~~~~vg 217 (413)
....+ ....++||+++|+||++|++++++|+++|||||||+|+|.++. +.|++. +.++++ .+.++|
T Consensus 295 ~~~~~----~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~lig 370 (658)
T PRK03705 295 DYHNW----TGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIA 370 (658)
T ss_pred CcCCC----CCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEE
Confidence 10111 2345799999999999999999999999999999999999886 234432 334333 367899
Q ss_pred cccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc---hhhhhhhcCCCCCc---ccccCCc
Q 015125 218 EYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGV---MGWWPSR 291 (413)
Q Consensus 218 E~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~---~~~~p~~ 291 (413)
|.|...+ ..|. +..+ ....+.|+..++..++..+.+. ...+...+...... ....|.+
T Consensus 371 E~Wd~~~-----~~~~-------~g~~----~~~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~ 434 (658)
T PRK03705 371 EPWDIGP-----GGYQ-------VGNF----PPPFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSA 434 (658)
T ss_pred ecccCCC-----Chhh-------hcCC----CcceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCe
Confidence 9997521 0000 0000 1123577878888888776322 22222222211111 1224678
Q ss_pred ceecccCCCCCcCCCCC---------C-C----------------------------ChhHHHHHHHHHhcCCCeeEEec
Q 015125 292 AVTFLDNHDTGSTQAHW---------P-F----------------------------PSNHIMEGYAYILMHPGIPSVFY 333 (413)
Q Consensus 292 ~v~flenHD~~R~~~~~---------~-~----------------------------~~~~~~la~a~ll~~pGiP~Iy~ 333 (413)
+|||+++||+.++...+ + + ...++|+++++||+++|+||||+
T Consensus 435 siNyv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~ 514 (658)
T PRK03705 435 SINLVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLA 514 (658)
T ss_pred EEEEEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHh
Confidence 99999999997543211 0 0 01357899999999999999999
Q ss_pred CcccC--------------------Cc---hhHHHHHHHHHHHHHhCcccCCCCe--------EEEEec-----------
Q 015125 334 DHFYD--------------------WG---DSIHNQIVKLMDVRRQQDIHSRSSI--------KILEAQ----------- 371 (413)
Q Consensus 334 G~E~g--------------------w~---~~l~~~i~~L~~lR~~~p~l~~G~~--------~~~~~~----------- 371 (413)
|||++ |+ .++++++|+||+|||++|+|+..++ +.+..+
T Consensus 515 GdE~grtq~G~nN~y~~~~~i~~~dW~~~~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~ 594 (658)
T PRK03705 515 GDEHGHSQHGNNNAYCQDNALTWLDWSQADRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQ 594 (658)
T ss_pred hHHhccCCCCCCCCccCCCCccccccchhhhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCC
Confidence 99974 33 3699999999999999999986554 222211
Q ss_pred -CCEEEEEECCEEEEEEcCCCCC-----CCCCCcEEee
Q 015125 372 -SNLYSAIIGDKVCMKIGDGSWC-----PAGKEWTLAT 403 (413)
Q Consensus 372 -~~~~~~~r~~~~lv~lnn~~~~-----~~~~~~~~~~ 403 (413)
...+++...+.++|++|-.... |. +.|+.++
T Consensus 595 ~~~~~~~~~~~~~~v~~N~~~~~~~~~lp~-~~w~~~~ 631 (658)
T PRK03705 595 GPKQLQILLSDRWLIAINATLEVTEIVLPE-GEWHAIP 631 (658)
T ss_pred cceEEEEEECCCEEEEECCCCCCeEEECCC-cceEEEE
Confidence 1345555566788888875432 43 5788884
No 19
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.5e-48 Score=402.90 Aligned_cols=356 Identities=14% Similarity=0.162 Sum_probs=251.8
Q ss_pred cCCceeEEEeeecCCCCC-----ccHHHHHhh-hhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHH
Q 015125 22 RNGREILFQGFNWESCKH-----DWWRNLERK-VPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLK 93 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~-----g~~~gi~~~-L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~ 93 (413)
+....+||++-..++..+ ++|++++++ |+|||+||||+||||||++++ .+|||+|.+||+++++||++++||
T Consensus 243 ~~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk 322 (730)
T PRK12568 243 VPAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFA 322 (730)
T ss_pred CCCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHH
Confidence 344478999999988763 389999998 599999999999999999876 479999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHH
Q 015125 94 ALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKD 173 (413)
Q Consensus 94 ~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~ 173 (413)
+||++||++||+||||+|+||++.+.... ..|.+.....++ ++.. .....|..+ .+|+.+|+||++
T Consensus 323 ~lV~~~H~~Gi~VIlD~V~nH~~~d~~~l----~~fdg~~~Ye~~-------d~~~--g~~~~W~~~-~~N~~~peVr~~ 388 (730)
T PRK12568 323 QFVDACHRAGIGVILDWVSAHFPDDAHGL----AQFDGAALYEHA-------DPRE--GMHRDWNTL-IYNYGRPEVTAY 388 (730)
T ss_pred HHHHHHHHCCCEEEEEeccccCCcccccc----ccCCCccccccC-------CCcC--CccCCCCCe-ecccCCHHHHHH
Confidence 99999999999999999999999864311 112211011111 1000 001122222 589999999999
Q ss_pred HHHHHHHHHhhcCCCeEeecccCCCc------------------------HHHHHHHHHhhC---C-CeEEEcccCCCCC
Q 015125 174 IIAWLRWLRNTVGFQDFRFDFARGYS------------------------AKYVKEYIEGAR---P-IFSVGEYWDSCNY 225 (413)
Q Consensus 174 l~~~~~~w~~~~gvDGfR~D~a~~i~------------------------~~~~~~~~~~~~---~-~~~vgE~~~~~~~ 225 (413)
|++++++|+++|||||||+|+++.|. .+||+++.+.++ | +++|||.+..-+
T Consensus 389 li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p- 467 (730)
T PRK12568 389 LLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWP- 467 (730)
T ss_pred HHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCc-
Confidence 99999999999999999999986541 369999888765 4 788999654311
Q ss_pred CCCCCCCccchhhHhHhhhh-ccCCCcccccCccchHHHHHHhccc-hhhhhhhcCCCCCcccccCCcceecccCCCCC-
Q 015125 226 NSHGLDYNQDSHRQRIINWI-DGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG- 302 (413)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~df~~~~~l~~~~~g~-~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~- 302 (413)
.+.... ..+-+++..+++.+.....+.+..+ ..+....-....+++ +.-.....+..|||+-
T Consensus 468 --------------~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~~~-y~~~e~fvlp~SHDEvv 532 (730)
T PRK12568 468 --------------GVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFGLV-YAFSERFVLPLSHDEVV 532 (730)
T ss_pred --------------cccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhhhh-hhhhccEeccCCCcccc
Confidence 111111 2223577888888777777776543 222111100000111 1111233567899994
Q ss_pred ----cCCCCCCCCh----hHHHHHHHHHhcCCCeeEEecCcccC------------Cc-------hhHHHHHHHHHHHHH
Q 015125 303 ----STQAHWPFPS----NHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRR 355 (413)
Q Consensus 303 ----R~~~~~~~~~----~~~~la~a~ll~~pGiP~Iy~G~E~g------------w~-------~~l~~~i~~L~~lR~ 355 (413)
++...+..+. ..+|..+++++|.||.||||||+|+| |. +.+..++|+|++||+
T Consensus 533 hgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~~~ldW~ll~~~~h~~~~~~~~dLn~ly~ 612 (730)
T PRK12568 533 HGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHDQSLDWHLLDGARHRGMQQLVGDLNAALR 612 (730)
T ss_pred cCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCCCCccccccCChhHHHHHHHHHHHHHHHH
Confidence 3333333332 24788999999999999999999986 32 258899999999999
Q ss_pred hCcccCCC-----CeEEEEe---cCCEEEEEE-C-----CEEEEEEcCCCC--------CCCCCCcEEeeeCCc
Q 015125 356 QQDIHSRS-----SIKILEA---QSNLYSAII-G-----DKVCMKIGDGSW--------CPAGKEWTLATSGHK 407 (413)
Q Consensus 356 ~~p~l~~G-----~~~~~~~---~~~~~~~~r-~-----~~~lv~lnn~~~--------~~~~~~~~~~~s~~~ 407 (413)
++|+|..+ .++.+.. +++|++|.| + +.++||+|.++. +|..+.|+++|+...
T Consensus 613 ~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~~~~~Y~ig~p~~G~~~eilNsd~ 686 (730)
T PRK12568 613 RTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQPHHDYRVGVPRAGGWREILNTDS 686 (730)
T ss_pred hChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCCCccCeEECCCCCCeEEEEEcCch
Confidence 99999654 4555543 346999998 2 237888898664 367789999998653
No 20
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.4e-48 Score=429.64 Aligned_cols=329 Identities=15% Similarity=0.191 Sum_probs=229.2
Q ss_pred ccccccCCceeEEEeeecCCCCC---------ccHHHHH--hhhhhHHHcCCCEEEcCCCCCCC-----------CCCCC
Q 015125 17 LGAVIRNGREILFQGFNWESCKH---------DWWRNLE--RKVPDISKSGFTSVWLPPATHSF-----------APEGY 74 (413)
Q Consensus 17 ~~~~~~~~~~~i~~~f~~~~~~~---------g~~~gi~--~~L~yLk~lGv~~I~L~Pi~~~~-----------~~~gY 74 (413)
.+|+.+-...+||++..++|+.. |+|+++. ++|+|||+||||+||||||+++. .||||
T Consensus 150 ~~~~~~~~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY 229 (1221)
T PRK14510 150 SPLHGDWDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGY 229 (1221)
T ss_pred CCCCCCcccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCC
Confidence 34454445579999999887642 4555555 44559999999999999999874 36899
Q ss_pred CcccCCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCc
Q 015125 75 LPQNLYSLNSSYG--SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGS 152 (413)
Q Consensus 75 ~~~d~~~id~~~G--t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (413)
++.||++|+|+|| +.+|||+||++||++||+||||+|+||++.++.... .. .+.+ .++........+... .
T Consensus 230 ~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p-~~-~~~~----~d~~~yy~~~~~~~~-~ 302 (1221)
T PRK14510 230 NTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGP-TL-SAYG----SDNSPYYRLEPGNPK-E 302 (1221)
T ss_pred CCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCC-cc-cccC----CCCCCceEecCCCCC-c
Confidence 9999999999999 999999999999999999999999999998754210 00 0000 000000000000000 0
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC---cHHHHHHHHHh---hCC------CeEEEccc
Q 015125 153 TGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY---SAKYVKEYIEG---ARP------IFSVGEYW 220 (413)
Q Consensus 153 ~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i---~~~~~~~~~~~---~~~------~~~vgE~~ 220 (413)
....+.....+|+++|.|++++++++++|++ +||||||||+|.++ +.+||+++... +++ .++|||.|
T Consensus 303 y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~W 381 (1221)
T PRK14510 303 YENWWGCGNLPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVLRRLKMIAEVW 381 (1221)
T ss_pred ccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCcccCcEEEecc
Confidence 0011122234677799999999999999997 99999999999999 88898876554 333 33599999
Q ss_pred CCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccch---hhhhhhcCCCCCcc---cccCCccee
Q 015125 221 DSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQF---WRLRDAQGKPPGVM---GWWPSRAVT 294 (413)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~~---~~~~~~~~~~~~~~---~~~p~~~v~ 294 (413)
...+ ..|..+ .+ ....+.+|+.++..++..+.|+. ..+...+......+ ...+..++|
T Consensus 382 d~~~-----~~~~~g-------~f----~~~~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~~~iN 445 (1221)
T PRK14510 382 DDGL-----GGYQYG-------KF----PQYWGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFSRSIN 445 (1221)
T ss_pred cCCC-----CccccC-------CC----CcceeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcccceE
Confidence 7521 011000 00 00125688888888888886542 23333332111111 123457899
Q ss_pred cccCCCCCcCCCCCCC--------------------------------------ChhHHHHHHHHHhcCCCeeEEecCcc
Q 015125 295 FLDNHDTGSTQAHWPF--------------------------------------PSNHIMEGYAYILMHPGIPSVFYDHF 336 (413)
Q Consensus 295 flenHD~~R~~~~~~~--------------------------------------~~~~~~la~a~ll~~pGiP~Iy~G~E 336 (413)
|++|||+.|+.+.+.+ ...+++++++++||+||+||||||||
T Consensus 446 fi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~GdE 525 (1221)
T PRK14510 446 FITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYGDE 525 (1221)
T ss_pred EEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecchh
Confidence 9999999986543210 02358999999999999999999999
Q ss_pred cC--------------------Cc---hhHHHHHHHHHHHHHhCcccCCCCeEEEE
Q 015125 337 YD--------------------WG---DSIHNQIVKLMDVRRQQDIHSRSSIKILE 369 (413)
Q Consensus 337 ~g--------------------w~---~~l~~~i~~L~~lR~~~p~l~~G~~~~~~ 369 (413)
+| |+ +++++++|+||+|||++|+|+.|++....
T Consensus 526 ~g~tq~Gn~n~y~~~~~r~~~~W~~~~~~l~~f~k~Li~lRk~~~~L~~g~~~~~~ 581 (1221)
T PRK14510 526 AGRSQNGNNNGYAQDNNRGTYPWGNEDEELLSFFRRLIKLRREYGVLRQGEFSSGT 581 (1221)
T ss_pred cccccCCCCCCCCCCCccccCCcccccHHHHHHHHHHHHHHHhChhhccCccccCc
Confidence 86 33 37999999999999999999999887543
No 21
>PLN02960 alpha-amylase
Probab=100.00 E-value=3.1e-47 Score=395.06 Aligned_cols=348 Identities=14% Similarity=0.154 Sum_probs=240.3
Q ss_pred eeEEEeeecCCCCC---ccHHHHHhh-hhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH---DWWRNLERK-VPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~~---g~~~gi~~~-L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
.+||++...++..+ |+|++++++ |+|||+||||+||||||++++ .+|||++++||+++++|||+++||+||++|
T Consensus 396 ~vIYElHvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~a 475 (897)
T PLN02960 396 LRIYECHVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEA 475 (897)
T ss_pred cEEEEEecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHH
Confidence 68999999987665 499999976 999999999999999999876 469999999999999999999999999999
Q ss_pred HHcCCEEEEEEccccCcCCCCCCCCcccccCCCC-CCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHH
Q 015125 100 KQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP-LSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWL 178 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~ 178 (413)
|++||+||||+|+||++.++...- ..|.+.. ..++.. ..+. . ...+...||+.+++||++|++++
T Consensus 476 H~~GI~VILDvV~NH~~~d~~~~L---~~FDG~~~~Yf~~~-----~~g~-----~-~~WG~~~fNy~~~eVr~fLlsna 541 (897)
T PLN02960 476 HGLGLLVFLDIVHSYAAADEMVGL---SLFDGSNDCYFHSG-----KRGH-----H-KRWGTRMFKYGDHEVLHFLLSNL 541 (897)
T ss_pred HHCCCEEEEEecccccCCccccch---hhcCCCccceeecC-----CCCc-----c-CCCCCcccCCCCHHHHHHHHHHH
Confidence 999999999999999999753211 1122100 011100 0000 0 11234679999999999999999
Q ss_pred HHHHhhcCCCeEeecccCCC-------------------------cHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCC
Q 015125 179 RWLRNTVGFQDFRFDFARGY-------------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHG 229 (413)
Q Consensus 179 ~~w~~~~gvDGfR~D~a~~i-------------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~ 229 (413)
++|+++|||||||+|++..| ...|++++.+.++ | +++|||...+.+
T Consensus 542 ~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P----- 616 (897)
T PLN02960 542 NWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYP----- 616 (897)
T ss_pred HHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCC-----
Confidence 99999999999999998653 1347777777654 3 788999665421
Q ss_pred CCCccchhhHhHhhhhcc-CCCcccccCccchHHHHHHhccch---hhhhhhcCCCCCcc--cccCCcceecccCCCCC-
Q 015125 230 LDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAVKGQF---WRLRDAQGKPPGVM--GWWPSRAVTFLDNHDTG- 302 (413)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~-~~~~~~~~df~~~~~l~~~~~g~~---~~~~~~~~~~~~~~--~~~p~~~v~flenHD~~- 302 (413)
.+...... +-|++..+++.....+..++.... +....... +.. ...+.+.+.|+||||+.
T Consensus 617 ----------~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~r~~~~~~l~~---s~~~~~~~~~~~v~Y~EnHDQVv 683 (897)
T PLN02960 617 ----------GLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPDQEWSMSKIVS---TLVKNKENADKMLSYAENHNQSI 683 (897)
T ss_pred ----------CccccCCCCCCCcccccCCCcHHHHHHHHHhCcCCCCChhccEe---eeccCcCCcceEEEEecCcCccc
Confidence 12222222 224555566665555555553211 11111111 111 12344789999999992
Q ss_pred ----cCCCCCCCC-------hh----------HHHHHHHHHhcCCCeeEEecCcccCC----------------------
Q 015125 303 ----STQAHWPFP-------SN----------HIMEGYAYILMHPGIPSVFYDHFYDW---------------------- 339 (413)
Q Consensus 303 ----R~~~~~~~~-------~~----------~~~la~a~ll~~pGiP~Iy~G~E~gw---------------------- 339 (413)
++...+... .. .+..+++++++ ||+||+|||+|||-
T Consensus 684 ~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~~-Pg~pLlFMG~EFGh~e~~~~PdP~n~~tf~~s~LdW 762 (897)
T PLN02960 684 SGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTLG-GSAYLNFMGNEFGHPERVEFPRASNNFSFSLANRRW 762 (897)
T ss_pred cCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHhC-CCCCEeeCccccCChhhhhCcCCCCccccccccCCc
Confidence 222222111 01 11112444444 89999999999762
Q ss_pred c-------hhHHHHHHHHHHHHHhCcccCCCCeEEEEe--cCCEEEEEECCEEEEEEcCCCC-C--------CCCCCcEE
Q 015125 340 G-------DSIHNQIVKLMDVRRQQDIHSRSSIKILEA--QSNLYSAIIGDKVCMKIGDGSW-C--------PAGKEWTL 401 (413)
Q Consensus 340 ~-------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~--~~~~~~~~r~~~~lv~lnn~~~-~--------~~~~~~~~ 401 (413)
. ..+..++|+|++||+++|+|..|...+... ++++++|.|+ .+++|+|.++. . |..+.|++
T Consensus 763 ~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~-~llvV~NFsp~~~~~~Y~vgvP~~G~y~e 841 (897)
T PLN02960 763 DLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRG-PLLFAFNFHPTNSYEEYEVGVEEAGEYEL 841 (897)
T ss_pred ccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeC-CeEEEEeCCCCCcCcCceECCCCCCcEEE
Confidence 1 257889999999999999998877666544 3469999995 58888999652 1 44578999
Q ss_pred eeeCCc
Q 015125 402 ATSGHK 407 (413)
Q Consensus 402 ~~s~~~ 407 (413)
+|+...
T Consensus 842 ilNSD~ 847 (897)
T PLN02960 842 ILNTDE 847 (897)
T ss_pred EEeCch
Confidence 997654
No 22
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=4.8e-47 Score=408.43 Aligned_cols=345 Identities=17% Similarity=0.268 Sum_probs=241.5
Q ss_pred cCCceeEEEeeecCCCC-----------CccHHHHHhhhhhHHHcCCCEEEcCCCCCC-------------------CC-
Q 015125 22 RNGREILFQGFNWESCK-----------HDWWRNLERKVPDISKSGFTSVWLPPATHS-------------------FA- 70 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~-----------~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~-------------------~~- 70 (413)
+....|||++.+++|+. .|+|+|++++|+|||+||||+||||||++. ..
T Consensus 448 ~~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~y 527 (1111)
T TIGR02102 448 KREDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNY 527 (1111)
T ss_pred CccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCcccccccccccccccccccccccccc
Confidence 34457999999998884 389999999999999999999999999862 11
Q ss_pred CCCCCcccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCC--CcccccCCCCCCCCCCC
Q 015125 71 PEGYLPQNLYSLNSSYGS--------EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG--GKYNRYDGIPLSWDEHA 140 (413)
Q Consensus 71 ~~gY~~~d~~~id~~~Gt--------~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~--~~y~~~~~~~~~~~~~~ 140 (413)
+|||+|.+||+++++||+ .+|||+||++||++||+||||+|+||++..++..+ ..|+.+.
T Consensus 528 nWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~---------- 597 (1111)
T TIGR02102 528 NWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFM---------- 597 (1111)
T ss_pred ccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEee----------
Confidence 399999999999999998 48999999999999999999999999998654221 1111100
Q ss_pred eeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhh---CC-CeEE
Q 015125 141 VTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGA---RP-IFSV 216 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~---~~-~~~v 216 (413)
+..+... . ..+..+++.++++||++|++++++|+++|||||||||++.+++.++++++..++ .| .+++
T Consensus 598 -----~~~G~~~-~--~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~~~li 669 (1111)
T TIGR02102 598 -----DADGTPR-T--SFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIMI 669 (1111)
T ss_pred -----CCCCCcc-c--ccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcCEEEE
Confidence 0011100 0 112467999999999999999999999999999999999999999998887664 34 6789
Q ss_pred EcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh---------ccch---hhhhhhcCCCCCc
Q 015125 217 GEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV---------KGQF---WRLRDAQGKPPGV 284 (413)
Q Consensus 217 gE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~---------~g~~---~~~~~~~~~~~~~ 284 (413)
||.|.... +...+... .....+..... ..+.|+..++..++..+ .|.. ..+.......+..
T Consensus 670 GE~W~~~~---g~~~~~~~---~~~~~~~~~~~-~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~ 742 (1111)
T TIGR02102 670 GEGWRTYA---GDEGDPVQ---AADQDWMKYTE-TVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHN 742 (1111)
T ss_pred EecccccC---CCCccccc---ccchhhHhcCC-cccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCccc
Confidence 99997511 11111000 00112222111 25677777776666432 1221 2233322211111
Q ss_pred c-cccCCcceecccCCCCCcCCCCCCC--------------ChhHHHHHHHHHhcCCCeeEEecCcccC-----------
Q 015125 285 M-GWWPSRAVTFLDNHDTGSTQAHWPF--------------PSNHIMEGYAYILMHPGIPSVFYDHFYD----------- 338 (413)
Q Consensus 285 ~-~~~p~~~v~flenHD~~R~~~~~~~--------------~~~~~~la~a~ll~~pGiP~Iy~G~E~g----------- 338 (413)
. ...|.+.|+|++|||+.++...+.. ...|.++|.+++|+++|+|||++||||+
T Consensus 743 ~~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnnn~y~ 822 (1111)
T TIGR02102 743 FEADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYR 822 (1111)
T ss_pred cccCCcccEEEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCccccc
Confidence 1 2357789999999999987432210 0137889999999999999999999862
Q ss_pred -------------------------------------------Cc-----------hhHHHHHHHHHHHHHhCcccCCCC
Q 015125 339 -------------------------------------------WG-----------DSIHNQIVKLMDVRRQQDIHSRSS 364 (413)
Q Consensus 339 -------------------------------------------w~-----------~~l~~~i~~L~~lR~~~p~l~~G~ 364 (413)
|+ .++++++|.||+||+++|+|+.++
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~fr~~~ 902 (1111)
T TIGR02102 823 TPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDAFRLGS 902 (1111)
T ss_pred ccccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCccccccc
Confidence 21 157899999999999999998775
Q ss_pred e-------EEEEec--------CCEEEEEE----CCEEEEEEcCCC
Q 015125 365 I-------KILEAQ--------SNLYSAII----GDKVCMKIGDGS 391 (413)
Q Consensus 365 ~-------~~~~~~--------~~~~~~~r----~~~~lv~lnn~~ 391 (413)
. .++... ..+++|.. ++..+|++|...
T Consensus 903 ~~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~ 948 (1111)
T TIGR02102 903 KALVDRKVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADD 948 (1111)
T ss_pred hhhhcCcEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCC
Confidence 4 233222 35777764 346777777754
No 23
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.3e-47 Score=411.93 Aligned_cols=353 Identities=15% Similarity=0.155 Sum_probs=244.8
Q ss_pred eeEEEeeecCCCCCccHHHHHhh-hhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 26 EILFQGFNWESCKHDWWRNLERK-VPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~-L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
.+||++...++...++|++++++ |||||+||||+||||||++++ .+|||++++||+++++|||++|||+||++||++
T Consensus 748 ~~IYEvHvgsf~~~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~ 827 (1224)
T PRK14705 748 MSVYEVHLGSWRLGLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQA 827 (1224)
T ss_pred cEEEEEEecccccCCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHC
Confidence 68999999999888999999988 599999999999999999876 579999999999999999999999999999999
Q ss_pred CCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 015125 103 KVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR 182 (413)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~ 182 (413)
||+||||+|+||++.+.... ..|.+.+...+..+.. +. ...|. ...+|+.+++||++|++++++|+
T Consensus 828 GI~VILD~V~nH~~~d~~~l----~~fdg~~~y~~~d~~~----g~-----~~~Wg-~~~fn~~~~eVr~fli~~a~~Wl 893 (1224)
T PRK14705 828 GIGVLLDWVPAHFPKDSWAL----AQFDGQPLYEHADPAL----GE-----HPDWG-TLIFDFGRTEVRNFLVANALYWL 893 (1224)
T ss_pred CCEEEEEeccccCCcchhhh----hhcCCCcccccCCccc----CC-----CCCCC-CceecCCCHHHHHHHHHHHHHHH
Confidence 99999999999998764311 1122111111111100 00 11122 24699999999999999999999
Q ss_pred hhcCCCeEeecccCCC------------------------cHHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCCCcc
Q 015125 183 NTVGFQDFRFDFARGY------------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQ 234 (413)
Q Consensus 183 ~~~gvDGfR~D~a~~i------------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~~~ 234 (413)
++|||||||+|++++| ..+||+++.+.++ | +++|||.+...+
T Consensus 894 ~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p---------- 963 (1224)
T PRK14705 894 DEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFP---------- 963 (1224)
T ss_pred HHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCc----------
Confidence 9999999999999776 3569999988765 4 788999775422
Q ss_pred chhhHhHhhhhc-cCCCcccccCccchHHHHHHhcc-chhhhhhhcCCCCCcccccCCcceecccCCCCCc-CC----CC
Q 015125 235 DSHRQRIINWID-GTGQLSAAFDFTTKGILQEAVKG-QFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGS-TQ----AH 307 (413)
Q Consensus 235 ~~~~~~l~~~~~-~~~~~~~~~df~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~R-~~----~~ 307 (413)
.+..... ++-+++..++..++....+.+.. ...+.........++ .+.......+..|||+.. .. ..
T Consensus 964 -----~vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~-~ya~~e~fvl~~SHDevvhgk~sl~~k 1037 (1224)
T PRK14705 964 -----GVTAPTSHGGLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITFSL-VYAFTENFLLPISHDEVVHGKGSMLRK 1037 (1224)
T ss_pred -----CccccccCCCccCCcEecchhhHHHHHHhhhCcchhhcccchHHHHH-HHHhhcCEecccccccccccchhHHHh
Confidence 1111111 12245555555555544444322 211110000000000 000111233456899853 11 11
Q ss_pred CCCCh----hHHHHHHHHHhcCCCeeEEecCcccC------------Cc-------hhHHHHHHHHHHHHHhCcccCCC-
Q 015125 308 WPFPS----NHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRRQQDIHSRS- 363 (413)
Q Consensus 308 ~~~~~----~~~~la~a~ll~~pGiP~Iy~G~E~g------------w~-------~~l~~~i~~L~~lR~~~p~l~~G- 363 (413)
...+. ..++++++++++.||+||||||+||| |. +.+..++|+|++||+++|+|..+
T Consensus 1038 m~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~~~~LdW~ll~~~~h~~~~~~~rdLn~ly~~~paL~~~d 1117 (1224)
T PRK14705 1038 MPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSEQHGLDWFLADIPAHRGIQLLTKDLNELYTSTPALYQRD 1117 (1224)
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccccccCCCcccCChhhHHHHHHHHHHHHHHhcChhhhccC
Confidence 22121 24688999999999999999999986 22 25788999999999999999644
Q ss_pred ----CeEEEEe---cCCEEEEEE----CCEEEEEEcCCCC--------CCCCCCcEEeeeCCce
Q 015125 364 ----SIKILEA---QSNLYSAII----GDKVCMKIGDGSW--------CPAGKEWTLATSGHKY 408 (413)
Q Consensus 364 ----~~~~~~~---~~~~~~~~r----~~~~lv~lnn~~~--------~~~~~~~~~~~s~~~~ 408 (413)
.++.+.. ++++++|.| ++.++|++|.++. +|..+.|+++++....
T Consensus 1118 ~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp~~~~~y~igvp~~G~y~eilnsd~~ 1181 (1224)
T PRK14705 1118 NEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSGGPHKGYTLGVPAAGAWTEVLNTDHE 1181 (1224)
T ss_pred CCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCCCCccCceECCCCCCeEEEEEeCchh
Confidence 4555532 457999998 2358888898552 2556899999987654
No 24
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=3.1e-46 Score=373.47 Aligned_cols=330 Identities=15% Similarity=0.171 Sum_probs=239.3
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhh-hHHHcCCCEEEcCCCC-CCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVP-DISKSGFTSVWLPPAT-HSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~-yLk~lGv~~I~L~Pi~-~~~-~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
.|+|-.|. ++-.+|||+||+++|+ ||++| |++|||+|+| +++ +++||+|.||++|||+|||.+||++|++
T Consensus 4 ~~~litY~-Ds~~~GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~----- 76 (495)
T PRK13840 4 KVQLITYA-DRLGDGGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGK----- 76 (495)
T ss_pred ceEEEEec-cCCCCCCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHh-----
Confidence 57777777 5555799999999999 59999 9999999999 444 4799999999999999999999999995
Q ss_pred CCEEEEEEccccCcCCCCCCC--------Cccccc----CC------CCCCCCCC------C-e--eccCCCCCCCcCCC
Q 015125 103 KVRAMADIVINHRVGTTQGHG--------GKYNRY----DG------IPLSWDEH------A-V--TSCTGGLGNGSTGD 155 (413)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~--------~~y~~~----~~------~~~~~~~~------~-~--~~~~~~~~~~~~~~ 155 (413)
||+||+|+|+||||.+|+|++ ++|.+| .. .+.+|..- . . ..+.++.. .+...
T Consensus 77 giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~-~~~w~ 155 (495)
T PRK13840 77 THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKT-RLVWT 155 (495)
T ss_pred CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCc-eEEec
Confidence 999999999999999999743 334221 10 01111100 0 0 00111111 11122
Q ss_pred -CCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc-------------HHHHHHHHHhhCC--CeEEEcc
Q 015125 156 -NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-------------AKYVKEYIEGARP--IFSVGEY 219 (413)
Q Consensus 156 -~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~-------------~~~~~~~~~~~~~--~~~vgE~ 219 (413)
....+||||++||+|++++++++++|+ +.||||||+||+..+. .++|+++.+.++. ..+|+|+
T Consensus 156 tF~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei 234 (495)
T PRK13840 156 TFTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEVLVEI 234 (495)
T ss_pred cCCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEEEEeC
Confidence 236899999999999999999999999 8899999999986542 3588888776653 5678997
Q ss_pred cCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh-ccchhhhhhhcCCCCCcccccCCcceecccC
Q 015125 220 WDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDN 298 (413)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~~~p~~~v~flen 298 (413)
+.... .. ..+ .++.+++|||.+...+..++ .++...+.+.+.. .|...+||+.|
T Consensus 235 ~~y~~--------------~~-~~~---~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~~-------~p~~~~n~L~~ 289 (495)
T PRK13840 235 HSYYK--------------TQ-IEI---AKKVDRVYDFALPPLILHTLFTGDVEALAHWLEI-------RPRNAVTVLDT 289 (495)
T ss_pred ccccC--------------cc-ccc---cccccEEecchhhHHHHHHHHhCCchHHHHHHHh-------CCCccEEeeec
Confidence 75310 00 001 12578999999998888876 5555555443321 25555799999
Q ss_pred CCCCcC----------CCC--------------------------------------------CCCChhHHHHHHHHHhc
Q 015125 299 HDTGST----------QAH--------------------------------------------WPFPSNHIMEGYAYILM 324 (413)
Q Consensus 299 HD~~R~----------~~~--------------------------------------------~~~~~~~~~la~a~ll~ 324 (413)
||.-.+ ... ++.+..++.+|.+++|+
T Consensus 290 HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~ 369 (495)
T PRK13840 290 HDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFF 369 (495)
T ss_pred CCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHc
Confidence 999765 110 11123478999999999
Q ss_pred CCCeeEEecCcccCCc------------------------------hhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCE
Q 015125 325 HPGIPSVFYDHFYDWG------------------------------DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNL 374 (413)
Q Consensus 325 ~pGiP~Iy~G~E~gw~------------------------------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~ 374 (413)
+||||+||||+|+|-. ++++..+++|+++|+++|++ .|++++...+++.
T Consensus 370 ~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF-~~~~~~~~~~~~~ 448 (495)
T PRK13840 370 APGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAF-DGAFSYAADGDTS 448 (495)
T ss_pred CCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CceEEEecCCCCe
Confidence 9999999999997521 36889999999999999999 6888887667777
Q ss_pred EEEEE--C-CEEEEEEcCC
Q 015125 375 YSAII--G-DKVCMKIGDG 390 (413)
Q Consensus 375 ~~~~r--~-~~~lv~lnn~ 390 (413)
+++.| + ....+.+|..
T Consensus 449 ~~~~~~~~~~~~~~~~~~~ 467 (495)
T PRK13840 449 LTLSWTAGDSSASLTLDFA 467 (495)
T ss_pred EEEEEecCCceEEEEEEcc
Confidence 77766 2 3444555553
No 25
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=2.3e-46 Score=372.13 Aligned_cols=331 Identities=17% Similarity=0.150 Sum_probs=237.9
Q ss_pred eeEEEeeecCCCCC--ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015125 26 EILFQGFNWESCKH--DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103 (413)
Q Consensus 26 ~~i~~~f~~~~~~~--g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~G 103 (413)
.|++..|. ++-.+ |+++|++++ ||++ ||++|||+|+|++++++||+|.||++|||+|||.+||++|+++
T Consensus 2 ~v~lity~-Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~----- 72 (470)
T TIGR03852 2 KAMLITYA-DSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVDPAFGDWSDVEALSEK----- 72 (470)
T ss_pred CceEEEec-CCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCCCCCcCchhhceeCcccCCHHHHHHHHHh-----
Confidence 46677776 44444 588888877 9999 7999999999999999999999999999999999999999998
Q ss_pred CEEEEEEccccCcCCCCCCC--------CcccccCCCC-CCCCCC--------Cee-----------ccCCCCCCCcCCC
Q 015125 104 VRAMADIVINHRVGTTQGHG--------GKYNRYDGIP-LSWDEH--------AVT-----------SCTGGLGNGSTGD 155 (413)
Q Consensus 104 i~VilD~V~NH~~~~~~~~~--------~~y~~~~~~~-~~~~~~--------~~~-----------~~~~~~~~~~~~~ 155 (413)
|+||+|+|+||+|.+|+|++ ++|.+|--.. ..|.+. .+. .+.++....+...
T Consensus 73 ~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~t 152 (470)
T TIGR03852 73 YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNT 152 (470)
T ss_pred hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEcc
Confidence 79999999999999998742 3443221000 001110 000 0111110111112
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc-----------H---HHHHHHHHhhC--CCeEEEcc
Q 015125 156 NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-----------A---KYVKEYIEGAR--PIFSVGEY 219 (413)
Q Consensus 156 ~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~-----------~---~~~~~~~~~~~--~~~~vgE~ 219 (413)
....+||||++||.|++++.+++++|+ +.||||||+||+..+. + ++++.+.+-+. +..+++|+
T Consensus 153 F~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~ 231 (470)
T TIGR03852 153 FGEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEILPEI 231 (470)
T ss_pred CCccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEEeHh
Confidence 347899999999999999999999999 8999999999994332 2 35566666443 37889998
Q ss_pred cCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh-ccchhhhhhhcCCCCCcccccCCcceecccC
Q 015125 220 WDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDN 298 (413)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~~~p~~~v~flen 298 (413)
+..-. .....+...+++|+|.+...+..++ .++...+.+.+. ..|.+.+||+.|
T Consensus 232 ~~~~~------------------~~~~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~-------~~p~~~~nfL~s 286 (470)
T TIGR03852 232 HEHYT------------------IQFKIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLR-------KSPMKQFTTLDT 286 (470)
T ss_pred hhhcc------------------cccccccceeEEccCccchhhHHHhhccCHHHHHHHHH-------hCcccceEEeec
Confidence 75311 1111124578999999987777776 566665655433 234455799999
Q ss_pred CCCCcC-------------------------CC----------------------CCCCChhHHHHHHHHHhcCCCeeEE
Q 015125 299 HDTGST-------------------------QA----------------------HWPFPSNHIMEGYAYILMHPGIPSV 331 (413)
Q Consensus 299 HD~~R~-------------------------~~----------------------~~~~~~~~~~la~a~ll~~pGiP~I 331 (413)
||.--+ .+ .++.+..++.+|.|++|++||+|.|
T Consensus 287 HDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~i 366 (470)
T TIGR03852 287 HDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQV 366 (470)
T ss_pred CCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCceE
Confidence 999321 00 1223456789999999999999999
Q ss_pred ecCcccCCc------------------------------hhHHHHHHHHHHHHHhCcccCC-CCeEEEEecCCEEEEEE-
Q 015125 332 FYDHFYDWG------------------------------DSIHNQIVKLMDVRRQQDIHSR-SSIKILEAQSNLYSAII- 379 (413)
Q Consensus 332 y~G~E~gw~------------------------------~~l~~~i~~L~~lR~~~p~l~~-G~~~~~~~~~~~~~~~r- 379 (413)
|||+|+|.. .++...+.+|+++|+++|++.. |++++...++.++++.|
T Consensus 367 Yy~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~~~~~~~~~~~~r~ 446 (470)
T TIGR03852 367 YYVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDIETPSENQIEIVRT 446 (470)
T ss_pred EechhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEecCCCCcEEEEEEE
Confidence 999998742 2467778889999999999985 99997777889999987
Q ss_pred ----CCEEEEEEcCCC
Q 015125 380 ----GDKVCMKIGDGS 391 (413)
Q Consensus 380 ----~~~~lv~lnn~~ 391 (413)
+..+.+++|..+
T Consensus 447 ~~~~~~~~~~~~n~~~ 462 (470)
T TIGR03852 447 NKDGGNKAILTANLKT 462 (470)
T ss_pred cCCCCceEEEEEecCC
Confidence 234555666544
No 26
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=6.7e-44 Score=370.55 Aligned_cols=349 Identities=14% Similarity=0.188 Sum_probs=242.5
Q ss_pred ceeEEEeeecCCCCC---ccHHHHH-hhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 015125 25 REILFQGFNWESCKH---DWWRNLE-RKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHK 98 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~---g~~~gi~-~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~ 98 (413)
..+||++....+..+ |+|++++ ++|+|||+||||+||||||++++ .+|||++.|||+++++||++++||+||++
T Consensus 229 ~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~ 308 (758)
T PLN02447 229 ALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDK 308 (758)
T ss_pred CCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHH
Confidence 368999999876655 6999975 56999999999999999999986 47999999999999999999999999999
Q ss_pred HHHcCCEEEEEEccccCcCCCCCCCCcccccCCCC-CCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHH
Q 015125 99 MKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP-LSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAW 177 (413)
Q Consensus 99 ~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~ 177 (413)
||++||+||||+|+||++.++.. + ...|.+.. ..|+..+ .++. ...+...+|+.+++||++|+++
T Consensus 309 aH~~GI~VilDvV~nH~~~~~~~--g-l~~fDg~~~~Yf~~~~-----~g~~------~~w~~~~~N~~~~eVr~fLl~~ 374 (758)
T PLN02447 309 AHSLGLRVLMDVVHSHASKNTLD--G-LNGFDGTDGSYFHSGP-----RGYH------WLWDSRLFNYGNWEVLRFLLSN 374 (758)
T ss_pred HHHCCCEEEEEeccccccccccc--c-ccccCCCCccccccCC-----CCCc------CcCCCceecCCCHHHHHHHHHH
Confidence 99999999999999999986531 0 11122111 1222111 0110 1122346999999999999999
Q ss_pred HHHHHhhcCCCeEeecccCCCc--------------------------HHHHHHHHHhhC---C-CeEEEcccCCCCCCC
Q 015125 178 LRWLRNTVGFQDFRFDFARGYS--------------------------AKYVKEYIEGAR---P-IFSVGEYWDSCNYNS 227 (413)
Q Consensus 178 ~~~w~~~~gvDGfR~D~a~~i~--------------------------~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~ 227 (413)
+++|+++|||||||+|++++|- ..||+.+.+.++ | +++|||.+.+.+
T Consensus 375 ~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p--- 451 (758)
T PLN02447 375 LRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMP--- 451 (758)
T ss_pred HHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCC---
Confidence 9999999999999999998762 236777766654 4 788999776522
Q ss_pred CCCCCccchhhHhHhhhhcc-CCCcccccCccchHHHHHHhccc---hhhhhhhcCCCCCccc-ccCCcceecccCCCCC
Q 015125 228 HGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVMG-WWPSRAVTFLDNHDTG 302 (413)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~~~-~~p~~~v~flenHD~~ 302 (413)
.+...... +-+++..++........+.++.+ .+.+-.... ++.. ....+.|.|.+|||+.
T Consensus 452 ------------~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~---sl~~r~~~E~~I~y~eSHDev 516 (758)
T PLN02447 452 ------------TLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVH---TLTNRRYTEKCVAYAESHDQA 516 (758)
T ss_pred ------------CccccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHHH---HHhcccccCceEeccCCcCee
Confidence 12222222 22344444444455555555332 122211110 1111 2334788999999997
Q ss_pred cCC--CC----C------CCCh--------hH----HHHHHHHHhcCCCe-eEEecCcccCC------------------
Q 015125 303 STQ--AH----W------PFPS--------NH----IMEGYAYILMHPGI-PSVFYDHFYDW------------------ 339 (413)
Q Consensus 303 R~~--~~----~------~~~~--------~~----~~la~a~ll~~pGi-P~Iy~G~E~gw------------------ 339 (413)
... +. + .+.. .| .|+..++++++||. +++|||.|||-
T Consensus 517 v~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~~~ 596 (758)
T PLN02447 517 LVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSYDKC 596 (758)
T ss_pred ecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCcccccccCcccc
Confidence 531 11 1 1111 11 25666789999999 79999999862
Q ss_pred ----c---------hhHHHHHHHHHHHHHhCcccCCCCeEEEE--ecCCEEEEEECCEEEEEEcCCCC-C--------CC
Q 015125 340 ----G---------DSIHNQIVKLMDVRRQQDIHSRSSIKILE--AQSNLYSAIIGDKVCMKIGDGSW-C--------PA 395 (413)
Q Consensus 340 ----~---------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~--~~~~~~~~~r~~~~lv~lnn~~~-~--------~~ 395 (413)
. +.+..+.|+|++|++++|+|..|...+.. .++.|++|.|++ +|+|+|..+. + |.
T Consensus 597 ~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~R~~-ll~V~NF~p~~s~~~Y~igvp~ 675 (758)
T PLN02447 597 RRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERGD-LVFVFNFHPTNSYSDYRVGCDK 675 (758)
T ss_pred cCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEEeCC-eEEEEeCCCCCCCCCcEECCCC
Confidence 1 14678999999999999999876554433 345799999974 8888998652 1 45
Q ss_pred CCCcEEeeeCC
Q 015125 396 GKEWTLATSGH 406 (413)
Q Consensus 396 ~~~~~~~~s~~ 406 (413)
.+.|+++|+..
T Consensus 676 ~G~y~~ilnSD 686 (758)
T PLN02447 676 PGKYKIVLDSD 686 (758)
T ss_pred CCeEEEEECCC
Confidence 78999998765
No 27
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-43 Score=360.92 Aligned_cols=352 Identities=18% Similarity=0.264 Sum_probs=221.6
Q ss_pred eEEEeeecCCCCC-----------ccHHHHHhhhhhHHHcCCCEEEcCCCCCC-CCCCCCCcccCCCCCCCCCCHHHHHH
Q 015125 27 ILFQGFNWESCKH-----------DWWRNLERKVPDISKSGFTSVWLPPATHS-FAPEGYLPQNLYSLNSSYGSEHLLKA 94 (413)
Q Consensus 27 ~i~~~f~~~~~~~-----------g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~-~~~~gY~~~d~~~id~~~Gt~~~~~~ 94 (413)
||||.|...|.+. |||+||+++||||++|||++|||+||+++ ..+|||++.||+.|+|+|||+++|++
T Consensus 2 viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~ 81 (505)
T COG0366 2 VIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKE 81 (505)
T ss_pred cEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHH
Confidence 6777777754433 89999999999999999999999999999 67999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEEccccCcCCCCCCCC-----------cccccCC------CCCCCCCCCeeccCCCCC-----CCc
Q 015125 95 LLHKMKQHKVRAMADIVINHRVGTTQGHGG-----------KYNRYDG------IPLSWDEHAVTSCTGGLG-----NGS 152 (413)
Q Consensus 95 Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~-----------~y~~~~~------~~~~~~~~~~~~~~~~~~-----~~~ 152 (413)
||++||++||+||+|+|+||++.+|+++.. .|+.|.. .+.+|... + ....|. ...
T Consensus 82 li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 158 (505)
T COG0366 82 LVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSV--F-GGDAWTWGNTGEYY 158 (505)
T ss_pred HHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhh--c-CCCCCCcCCCCceE
Confidence 999999999999999999999999985421 2222211 11112110 0 011111 111
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcH-----------HHHHHHHHhhCC----CeEEE
Q 015125 153 TGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA-----------KYVKEYIEGARP----IFSVG 217 (413)
Q Consensus 153 ~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~-----------~~~~~~~~~~~~----~~~vg 217 (413)
.......+|+||+.||+||+++.+++++|+ ++||||||+|+++++++ .++..+.+..++ .+..+
T Consensus 159 ~~~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (505)
T COG0366 159 LHLFSSEQPDLNWENPEVREELLDVVKFWL-DKGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPDVLIYG 237 (505)
T ss_pred EEecCCCCCCcCCCCHHHHHHHHHHHHHHH-HcCCCeEEeccHhhhccccCCCCcccccccHHHHHHHHHHHHHHHHhcC
Confidence 222346789999999999999999999999 69999999999999997 556655554331 11112
Q ss_pred cccCCCC-CCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh-ccchhhhhhhcCCCCCcccccCCcceec
Q 015125 218 EYWDSCN-YNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTF 295 (413)
Q Consensus 218 E~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~~~p~~~v~f 295 (413)
+.+.... +......+. ..........+...+++.....-.... ......+....................|
T Consensus 238 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (505)
T COG0366 238 EAITDVGEAPGAVKEDF-------ADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVNLNDGWNNLF 310 (505)
T ss_pred cceeeeeccccccchhh-------hhccchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhhhccccCchhhh
Confidence 2221100 000000000 000000000122333332211000000 0001111110000000011112234458
Q ss_pred ccCCCCCcCCCCCCCCh----hHHHHHHHHHhcCCCeeEEecCcccC---------------------------------
Q 015125 296 LDNHDTGSTQAHWPFPS----NHIMEGYAYILMHPGIPSVFYDHFYD--------------------------------- 338 (413)
Q Consensus 296 lenHD~~R~~~~~~~~~----~~~~la~a~ll~~pGiP~Iy~G~E~g--------------------------------- 338 (413)
.+|||++|+.+....+. ..++++.++++++||+|+||||+|.|
T Consensus 311 ~~~hD~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 390 (505)
T COG0366 311 LSNHDQPRLLSRFGDDVGGRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVELDSIILLSRDGCRTPMP 390 (505)
T ss_pred hhhcCccceeeeccCCccchHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhhhhhhhhccccCCCCCcC
Confidence 99999999988775444 56888888899999999999999853
Q ss_pred Cc------------------------------------hhHHHHHHHHHHHHHhC-cccCCCCeEEEEecC--CEEEEEE
Q 015125 339 WG------------------------------------DSIHNQIVKLMDVRRQQ-DIHSRSSIKILEAQS--NLYSAII 379 (413)
Q Consensus 339 w~------------------------------------~~l~~~i~~L~~lR~~~-p~l~~G~~~~~~~~~--~~~~~~r 379 (413)
|+ .+++.++++|+++|+++ +.+..|......... .++++.|
T Consensus 391 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 470 (505)
T COG0366 391 WDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVLLADDDPSLLAFLR 470 (505)
T ss_pred CCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCcccceecCCCCceEEEEec
Confidence 21 15788999999999998 555567444443332 5888888
Q ss_pred C--CEEEEEEcC
Q 015125 380 G--DKVCMKIGD 389 (413)
Q Consensus 380 ~--~~~lv~lnn 389 (413)
. +..+++++|
T Consensus 471 ~~~~~~~~~~~n 482 (505)
T COG0366 471 ESGGETLLVVNN 482 (505)
T ss_pred ccCCceEEEEEc
Confidence 3 333444444
No 28
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=6.2e-42 Score=362.58 Aligned_cols=190 Identities=16% Similarity=0.231 Sum_probs=149.3
Q ss_pred cCCceeEEEeeecCCCC---------CccHHHHHhh-------hhhHHHcCCCEEEcCCCCCCC----------------
Q 015125 22 RNGREILFQGFNWESCK---------HDWWRNLERK-------VPDISKSGFTSVWLPPATHSF---------------- 69 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~---------~g~~~gi~~~-------L~yLk~lGv~~I~L~Pi~~~~---------------- 69 (413)
+....+||++=+++|+. .|+|.+++++ |.||++||||+|+|||+|+..
T Consensus 249 ~~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~ 328 (898)
T TIGR02103 249 SFADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPF 328 (898)
T ss_pred CCcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccch
Confidence 34457999999998873 3899999887 666668899999999998642
Q ss_pred ------------------------------------------------CCCCCCcccCCCCCCCCCCH-------HHHHH
Q 015125 70 ------------------------------------------------APEGYLPQNLYSLNSSYGSE-------HLLKA 94 (413)
Q Consensus 70 ------------------------------------------------~~~gY~~~d~~~id~~~Gt~-------~~~~~ 94 (413)
-+|||+|.+|+.++..|++. .|||+
T Consensus 329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~ 408 (898)
T TIGR02103 329 SKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFRE 408 (898)
T ss_pred hhhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHH
Confidence 15999999999999999883 69999
Q ss_pred HHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHH
Q 015125 95 LLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDI 174 (413)
Q Consensus 95 Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l 174 (413)
||++||++||+||||+|+|||+.+++...+.+....+ ..++... .++.. .......+++.++|+||++|
T Consensus 409 mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P--~YY~r~~----~~G~~-----~n~~~~~d~a~e~~~Vrk~i 477 (898)
T TIGR02103 409 MVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVP--GYYHRLN----EDGGV-----ENSTCCSNTATEHRMMAKLI 477 (898)
T ss_pred HHHHHHHCCCEEEEEeecccccccCccCcccccccCc--HhhEeeC----CCCCe-----ecCCCCcCCCCCCHHHHHHH
Confidence 9999999999999999999999987654332221111 1111110 01110 11234467899999999999
Q ss_pred HHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC---C-CeEEEcccCC
Q 015125 175 IAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWDS 222 (413)
Q Consensus 175 ~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~---~-~~~vgE~~~~ 222 (413)
++++++|+++|||||||||++++++.+||+++.++++ | .+++||.|..
T Consensus 478 iDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~ 529 (898)
T TIGR02103 478 VDSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDF 529 (898)
T ss_pred HHHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 9999999999999999999999999999999988765 4 6789999974
No 29
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=338.63 Aligned_cols=348 Identities=16% Similarity=0.199 Sum_probs=227.0
Q ss_pred eeEEEeeecCCCC---CccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCK---HDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (413)
Q Consensus 26 ~~i~~~f~~~~~~---~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h 100 (413)
-+||.+=.-+++. .|+++.++++|||||+||||+|+||||.+.+ .+|||+++-||++.++|||+++||+||++||
T Consensus 145 ~vIYElHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH 224 (628)
T COG0296 145 IVIYELHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAH 224 (628)
T ss_pred ceEEEEEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHH
Confidence 5799998888888 8999999999999999999999999999988 4899999999999999999999999999999
Q ss_pred HcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHH
Q 015125 101 QHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRW 180 (413)
Q Consensus 101 ~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~ 180 (413)
++||.||||+|+||.+.+.... ..|.+....-+..+......+|+ ..-.|+..++||+++++++.+
T Consensus 225 ~~GIgViLD~V~~HF~~d~~~L----~~fdg~~~~e~~~~~~~~~~~Wg----------~~i~~~gr~EVR~Fll~nal~ 290 (628)
T COG0296 225 QAGIGVILDWVPNHFPPDGNYL----ARFDGTFLYEHEDPRRGEHTDWG----------TAIFNYGRNEVRNFLLANALY 290 (628)
T ss_pred HcCCEEEEEecCCcCCCCcchh----hhcCCccccccCCcccccCCCcc----------cchhccCcHHHHHHHHHHHHH
Confidence 9999999999999999965421 11111000000000011112222 122455589999999999999
Q ss_pred HHhhcCCCeEeecccCCCc------------------------HHHHHHHHHhhC---C-CeEEEcccCCCCCCCCCCCC
Q 015125 181 LRNTVGFQDFRFDFARGYS------------------------AKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDY 232 (413)
Q Consensus 181 w~~~~gvDGfR~D~a~~i~------------------------~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~ 232 (413)
|+++|+|||+|+||+..|. .+|+++..+.++ | .+.|+|-|.+.+..
T Consensus 291 Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~------ 364 (628)
T COG0296 291 WLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHV------ 364 (628)
T ss_pred HHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCc------
Confidence 9999999999999998774 235555555554 2 67799988764320
Q ss_pred ccchhhHhHhhhhccCCCcccccCccchHHHHHHh--ccc--hhhhhhhcCCCCCcccccCCcceecccCCCCC--cCCC
Q 015125 233 NQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV--KGQ--FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG--STQA 306 (413)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~--~g~--~~~~~~~~~~~~~~~~~~p~~~v~flenHD~~--R~~~ 306 (413)
.+...+. +.++.-..|+. .+.+.+ .+. ..+....-....+ +-+.+...+.+..|||+- -..+
T Consensus 365 -------t~~~~~g-G~gf~yk~nmg---~m~D~~~y~~~~~~~r~~~h~~~tf~-~~y~~se~~~l~~sHDevvhGk~s 432 (628)
T COG0296 365 -------TLPVAIG-GLGFGYKWNMG---WMHDTLFYFGKDPVYRKYHHGELTFG-LLYAFSENVVLPLSHDEVVHGKRS 432 (628)
T ss_pred -------eeeeccc-ccchhhhhhhh---hHhhHHHhcccCccccccccCCCccc-cccccceeEeccccccceeecccc
Confidence 0111111 11223333333 223332 121 1111111110001 112345778999999996 2222
Q ss_pred ---CCCC----ChhHHHHHHHHHhcCCCeeEEecCcccC------------C-----------chhHHHHHHHHHHHHHh
Q 015125 307 ---HWPF----PSNHIMEGYAYILMHPGIPSVFYDHFYD------------W-----------GDSIHNQIVKLMDVRRQ 356 (413)
Q Consensus 307 ---~~~~----~~~~~~la~a~ll~~pGiP~Iy~G~E~g------------w-----------~~~l~~~i~~L~~lR~~ 356 (413)
.+.. ....++.+++++++.||+|++|||+||| | .+.+..+.+.|.++-+.
T Consensus 433 l~~rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~ 512 (628)
T COG0296 433 LGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFSSLDWLLLDQAVREGRHKEFRRLVRDLNALYRI 512 (628)
T ss_pred hhccCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCcccCCCChhhhhhccccchHHHHHHHHHhhHHhhcc
Confidence 2211 2346888999999999999999999986 1 12344445555545555
Q ss_pred CcccCCC-----CeEEEEec---CCEEEEEE-----CCEEEEEEcCCCCC---------CCCCCcEEeeeC
Q 015125 357 QDIHSRS-----SIKILEAQ---SNLYSAII-----GDKVCMKIGDGSWC---------PAGKEWTLATSG 405 (413)
Q Consensus 357 ~p~l~~G-----~~~~~~~~---~~~~~~~r-----~~~~lv~lnn~~~~---------~~~~~~~~~~s~ 405 (413)
.+.+..- .++.+..+ +++++|.| +.+.+|++||...+ |.++.|++.++.
T Consensus 513 ~~~l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~~~~~~~y~~~~~~~g~~~~~lnt 583 (628)
T COG0296 513 PDPLHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFTPVPRVDYRVGVPVAGRWREVLNT 583 (628)
T ss_pred CCccchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCCCCcccccccCCcccccEEEeccc
Confidence 5554433 34444432 35888877 45667777774432 245678887764
No 30
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=1.6e-39 Score=326.31 Aligned_cols=346 Identities=18% Similarity=0.172 Sum_probs=249.4
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCC---------CC-CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHS---------FA-PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~---------~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
....+||++|||++|||+|++++ +. +.||++.| |.|||.|||++||++|+++||++||+||+|+|+|||
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHT 155 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHT 155 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-CccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 45689999999999999999999 65 78999999 699999999999999999999999999999999999
Q ss_pred cCCCCCCC------Cccc--------------ccCCCCCCCCC----------------------CCeeccC----CCCC
Q 015125 116 VGTTQGHG------GKYN--------------RYDGIPLSWDE----------------------HAVTSCT----GGLG 149 (413)
Q Consensus 116 ~~~~~~~~------~~y~--------------~~~~~~~~~~~----------------------~~~~~~~----~~~~ 149 (413)
|..|+ +. +.|- -+.+.+..|+. ..++.-. .+|.
T Consensus 156 s~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt 234 (688)
T TIGR02455 156 GKGAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWS 234 (688)
T ss_pred CCCcc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCce
Confidence 99998 32 2221 11111111110 0011000 1121
Q ss_pred --------------CCcCCCCCCCCCcCCCCCHH--HHHHHH-HHHHHHHhhcCCCeEeecccCCCc-------------
Q 015125 150 --------------NGSTGDNFHGVPNIDHTQHF--VRKDII-AWLRWLRNTVGFQDFRFDFARGYS------------- 199 (413)
Q Consensus 150 --------------~~~~~~~~~~~~dln~~~~~--vr~~l~-~~~~~w~~~~gvDGfR~D~a~~i~------------- 199 (413)
+.+....+..+|+||+.||. ||+.++ +++++|. +.|++|||+||+..+.
T Consensus 235 ~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~~~~~~~~e~ 313 (688)
T TIGR02455 235 ATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERRAEGTAWSEG 313 (688)
T ss_pred ecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecCCCCCCCCcc
Confidence 11122345789999999999 999999 8999998 9999999999976653
Q ss_pred HHHHHHHHHhh-----CC-CeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHh-ccchh
Q 015125 200 AKYVKEYIEGA-----RP-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFW 272 (413)
Q Consensus 200 ~~~~~~~~~~~-----~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~-~g~~~ 272 (413)
..+++.+.+.+ ++ .++++|.... ++.+..|.. ++.+..|||.+...+.-++ .|+..
T Consensus 314 h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~---------------~~d~~~~~g--~~~dl~~dF~t~p~~~~AL~tgda~ 376 (688)
T TIGR02455 314 HPLSLTGNQLIAGAIRKAGGFSFQELNLT---------------IDDIAAMSH--GGADLSYDFITRPAYHHALLTGDTE 376 (688)
T ss_pred CHHHHHHHHHHHHhhhcCCeeEeeeccCC---------------HHHHHHHhC--CCcceeecccccHHHHHHHHcCCHH
Confidence 34545444432 23 7889996554 467788877 3789999999987777776 67765
Q ss_pred hhhhhcCCCCCcccccCCcceecccCCCCCcCC-------------------------C---------------------
Q 015125 273 RLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQ-------------------------A--------------------- 306 (413)
Q Consensus 273 ~~~~~~~~~~~~~~~~p~~~v~flenHD~~R~~-------------------------~--------------------- 306 (413)
-+...+...+. .+-.+.+.++|+.|||+--.. +
T Consensus 377 pLr~~L~~~~~-~gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~ 455 (688)
T TIGR02455 377 FLRLMLKEMHA-FGIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERLSGEHAPYNLK 455 (688)
T ss_pred HHHHHHHhhhc-CCCCchhhhhhccCccccchhhhhhcccccccccccccccCCccccCHHHHHHHHHHhcCCCccccce
Confidence 55554432211 111234789999999992100 0
Q ss_pred -------------------------CCCCChhHHHHHHHHHhc----CCCeeEEecC--------------cccC-----
Q 015125 307 -------------------------HWPFPSNHIMEGYAYILM----HPGIPSVFYD--------------HFYD----- 338 (413)
Q Consensus 307 -------------------------~~~~~~~~~~la~a~ll~----~pGiP~Iy~G--------------~E~g----- 338 (413)
...++..+++++.++|++ +||+|+|||| +|+|
T Consensus 456 ~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD~~ 535 (688)
T TIGR02455 456 FVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGDTR 535 (688)
T ss_pred EEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCceEeecccccccccccccchhhhhccCccc
Confidence 012244568999999999 9999999999 6654
Q ss_pred C--------------------------------------chhHHHHHHHHHHHHHhCcccCCCCeEEEEecC-CEEEEEE
Q 015125 339 W--------------------------------------GDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQS-NLYSAII 379 (413)
Q Consensus 339 w--------------------------------------~~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~-~~~~~~r 379 (413)
| ..++...+++|+++|+++|++..|.+.++.+++ .++++.+
T Consensus 536 wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~~~~~~gvLa~v~ 615 (688)
T TIGR02455 536 WIHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIPDVQAPGLLVMVH 615 (688)
T ss_pred cccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeecCCCCCcEEEEEE
Confidence 2 037999999999999999999999999887764 6888876
Q ss_pred ---C--CEEEEEEcCCCCC---------------------------CCCCCcEEeeeCCceEEee
Q 015125 380 ---G--DKVCMKIGDGSWC---------------------------PAGKEWTLATSGHKYAVWH 412 (413)
Q Consensus 380 ---~--~~~lv~lnn~~~~---------------------------~~~~~~~~~~s~~~~~~~~ 412 (413)
+ +.++++.|.+... ...+.+++.|++++|+|++
T Consensus 616 ~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~~~~~~dl~~~~~~~~~~~~~~~~i~L~~y~~~wl~ 680 (688)
T TIGR02455 616 ELPAGKGIQITALNFGADAIAEEICLPGFAPGPVVDIIHESVEGDLTDDCELMINLDPYEALALR 680 (688)
T ss_pred EcCCCCceEEEeeccCCCCeeeEEeccccCCCCceeccCCCccCCcCCCceeEEEecCcceEEEE
Confidence 2 3455666663310 0225688999999998874
No 31
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=2.7e-40 Score=349.16 Aligned_cols=192 Identities=17% Similarity=0.166 Sum_probs=145.3
Q ss_pred cccCCceeEEEeeecCCCCC---------ccHHHHHhh-------hhhHHHcCCCEEEcCCCCCCC--------------
Q 015125 20 VIRNGREILFQGFNWESCKH---------DWWRNLERK-------VPDISKSGFTSVWLPPATHSF-------------- 69 (413)
Q Consensus 20 ~~~~~~~~i~~~f~~~~~~~---------g~~~gi~~~-------L~yLk~lGv~~I~L~Pi~~~~-------------- 69 (413)
..+....|||++=+++|+.+ |+|.+++++ |+|||+||||+|+|||+++..
T Consensus 334 ~~~~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~ 413 (970)
T PLN02877 334 LLSFSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDP 413 (970)
T ss_pred cCCCcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCccccccccccccc
Confidence 33444579999999998863 899998887 666677799999999999742
Q ss_pred -------------------------CCCCCCcccCCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 70 -------------------------APEGYLPQNLYSLNSSYGS-------EHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 70 -------------------------~~~gY~~~d~~~id~~~Gt-------~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
.+|||+|..|++++..|++ ..|||+||++||++||+||||+|+||++.
T Consensus 414 ~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~ 493 (970)
T PLN02877 414 KELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHS 493 (970)
T ss_pred chhccccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccC
Confidence 3599999999999999998 25899999999999999999999999998
Q ss_pred CCCCCC-CcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 118 TTQGHG-GKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 118 ~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
.+++.. +.+....+ .+|. .. +.++.. .......+.+.+++.||++|++++++|+++|||||||||.+.
T Consensus 494 ~g~~~~~s~ld~~vP--~YY~-----r~-~~~G~~---~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg 562 (970)
T PLN02877 494 SGPFDENSVLDKIVP--GYYL-----RR-NSDGFI---ENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMG 562 (970)
T ss_pred CCCcchhhcccCCCC--CceE-----EE-CCCCCc---ccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 765432 21111110 0111 00 111110 012345567889999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHh---h---------CCCeEEEcccCC
Q 015125 197 GYSAKYVKEYIEG---A---------RPIFSVGEYWDS 222 (413)
Q Consensus 197 ~i~~~~~~~~~~~---~---------~~~~~vgE~~~~ 222 (413)
+++.+.|.++.++ + +..+++||.|..
T Consensus 563 ~i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~ 600 (970)
T PLN02877 563 HLMKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDF 600 (970)
T ss_pred cccHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCC
Confidence 9999987765543 3 126799999974
No 32
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-39 Score=329.47 Aligned_cols=365 Identities=27% Similarity=0.384 Sum_probs=242.0
Q ss_pred ccccCCceeEEEeeecCCCCC-----ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHH
Q 015125 19 AVIRNGREILFQGFNWESCKH-----DWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLL 92 (413)
Q Consensus 19 ~~~~~~~~~i~~~f~~~~~~~-----g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~ 92 (413)
..++. ..+||.+..+|..+ ||++||++||+|||+|||++|||+||++++. ++||++.||+.|+|+|||+++|
T Consensus 13 ~~W~~--~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf 90 (545)
T KOG0471|consen 13 DWWKT--ESIYQIYPDSFADSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDF 90 (545)
T ss_pred hhhhc--CceeEEeccccccccCCCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHH
Confidence 34544 58999988877666 6999999999999999999999999999985 6999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEEccccCcCCCCCCCCc------c----cccCCC---------CCCCCCCCee---ccCCCCCC
Q 015125 93 KALLHKMKQHKVRAMADIVINHRVGTTQGHGGK------Y----NRYDGI---------PLSWDEHAVT---SCTGGLGN 150 (413)
Q Consensus 93 ~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~------y----~~~~~~---------~~~~~~~~~~---~~~~~~~~ 150 (413)
++||+++|++||++|+|+|+||++..++|+... | .++.+. +..|.+.... .+..+...
T Consensus 91 ~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~ 170 (545)
T KOG0471|consen 91 KELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQK 170 (545)
T ss_pred HHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccc
Confidence 999999999999999999999999888765421 1 122211 1222222111 11112223
Q ss_pred CcCCCCCCCCCcCCCCCHHHHHHHHHHHH-HHHhhcCCCeEeecccCCCcHHHHHHHHHhhCCCeEEEcccCCCCC-CCC
Q 015125 151 GSTGDNFHGVPNIDHTQHFVRKDIIAWLR-WLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNY-NSH 228 (413)
Q Consensus 151 ~~~~~~~~~~~dln~~~~~vr~~l~~~~~-~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~~~~vgE~~~~~~~-~~~ 228 (413)
.+.......+||+|++||.|++.+.++++ +|. +.||||||+|+++++..+++. ......|.+.+||.|.++++ ...
T Consensus 171 ~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~ 248 (545)
T KOG0471|consen 171 YYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGENFK-NMWPDEPVFDVGEKLQDDNYVAYQ 248 (545)
T ss_pred eeccchhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEccccccccccc-ccccCCCcccceeEecCcchhhcc
Confidence 33444457899999999999999999999 665 999999999999999998887 33334457788998887654 223
Q ss_pred CCCCccchh--hHhHhhhhccCCCcccccCccchHHHH-HHhcc--chhhhhhhcCCC-------------------C--
Q 015125 229 GLDYNQDSH--RQRIINWIDGTGQLSAAFDFTTKGILQ-EAVKG--QFWRLRDAQGKP-------------------P-- 282 (413)
Q Consensus 229 ~~~~~~~~~--~~~l~~~~~~~~~~~~~~df~~~~~l~-~~~~g--~~~~~~~~~~~~-------------------~-- 282 (413)
...|..+.. ...+..+........+.+.+.-...+. .+... ...++....... +
T Consensus 249 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~~~ 328 (545)
T KOG0471|consen 249 YNDYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVASI 328 (545)
T ss_pred cccccccchhhhhHHHHHHhhhhhhhhcccccchhhhhhhhhccHHHHHhhhccCCCCccccccchhhhhhhhhccchHH
Confidence 333333210 000111111111122333322111110 00000 000111100000 0
Q ss_pred ------CcccccC--C-cceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC---------------
Q 015125 283 ------GVMGWWP--S-RAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD--------------- 338 (413)
Q Consensus 283 ------~~~~~~p--~-~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g--------------- 338 (413)
..+...+ + .....+.|||..|..++++.+ ..++...+++++||+|++|+|+|+|
T Consensus 329 ~~~~~~~~~~~~~~~~~~a~W~~~~~~~~r~~sr~~~~--~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~ 406 (545)
T KOG0471|consen 329 YKEVEVDWLSNHDTENRWAHWVLGNHDQARLASRFGSD--SVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPK 406 (545)
T ss_pred HHHHHHHHHhcCCccCCceeeeecCccchhhHHHhcch--hHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcH
Confidence 0001111 1 234456778888887776533 3777788999999999999999964
Q ss_pred ---------Cc---------------------------------hhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEE
Q 015125 339 ---------WG---------------------------------DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYS 376 (413)
Q Consensus 339 ---------w~---------------------------------~~l~~~i~~L~~lR~~~p~l~~G~~~~~~~~~~~~~ 376 (413)
|+ .++...++++..+|+....+..|.......+..+++
T Consensus 407 ~~~~rt~~~w~~~~~~gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~~~~~~~if~ 486 (545)
T KOG0471|consen 407 LMQSRTPMQWDESTNAGFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVLFAATPGLFS 486 (545)
T ss_pred HhccCCccccccccccCCCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceeeecCCCceEE
Confidence 11 257889999999999987677888888777888999
Q ss_pred EEE---CCEEEEEEcC
Q 015125 377 AII---GDKVCMKIGD 389 (413)
Q Consensus 377 ~~r---~~~~lv~lnn 389 (413)
+.| +....++++|
T Consensus 487 ~~r~~~~~~~~~~~~~ 502 (545)
T KOG0471|consen 487 FSRNWDGNERFIAVLN 502 (545)
T ss_pred EEeccCCCceEEEEEe
Confidence 998 3344444444
No 33
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=336.00 Aligned_cols=324 Identities=17% Similarity=0.240 Sum_probs=218.1
Q ss_pred cccccccccccCCceeEEEeeecCCC---------CCccHHHHHhh--hhhHHHcCCCEEEcCCCCCCC-----------
Q 015125 12 NQQTDLGAVIRNGREILFQGFNWESC---------KHDWWRNLERK--VPDISKSGFTSVWLPPATHSF----------- 69 (413)
Q Consensus 12 ~~~~~~~~~~~~~~~~i~~~f~~~~~---------~~g~~~gi~~~--L~yLk~lGv~~I~L~Pi~~~~----------- 69 (413)
+-+.+.+|.++....|||++=+++|+ ..|+|.|++++ |+|||+||||+|+||||+...
T Consensus 158 ~w~~~~~~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~ 237 (697)
T COG1523 158 DWENDKPPRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLN 237 (697)
T ss_pred ccccCCCCCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccc
Confidence 33445677787777899999999998 22899999999 999999999999999999654
Q ss_pred CCCCCCcccCCCCCCCCCCH-------HHHHHHHHHHHHcCCEEEEEEccccCcCCCC-CCCCcccccCC---CCCCCCC
Q 015125 70 APEGYLPQNLYSLNSSYGSE-------HLLKALLHKMKQHKVRAMADIVINHRVGTTQ-GHGGKYNRYDG---IPLSWDE 138 (413)
Q Consensus 70 ~~~gY~~~d~~~id~~~Gt~-------~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~-~~~~~y~~~~~---~~~~~~~ 138 (413)
.+|||+|..|++++++|-+. .|||.||+++|++||+||||+|+|||+.... +.. ..|++ ..+++..
T Consensus 238 n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t---~~f~~id~~~Yyr~~ 314 (697)
T COG1523 238 NNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPT---LSFRGIDPNYYYRLD 314 (697)
T ss_pred cccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcc---cccccCCcCceEEEC
Confidence 37999999999999999663 4999999999999999999999999986321 111 11211 0011111
Q ss_pred CCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHH-----HHHHHhhC--
Q 015125 139 HAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYV-----KEYIEGAR-- 211 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~-----~~~~~~~~-- 211 (413)
. ++....+ ......+|.++|.||++|+|+++||+++++|||||||.+..+..+.+ ..+...+.
T Consensus 315 ~------dg~~~N~----TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~ 384 (697)
T COG1523 315 P------DGYYSNG----TGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANLFLAGEGD 384 (697)
T ss_pred C------CCCeecC----CccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcchhhhccCC
Confidence 1 1111111 23456899999999999999999999999999999999988775544 12333332
Q ss_pred ----CCeEEEcccCCCC--CCCC-CCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccch---hhhhhhcCCC
Q 015125 212 ----PIFSVGEYWDSCN--YNSH-GLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQF---WRLRDAQGKP 281 (413)
Q Consensus 212 ----~~~~vgE~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~~---~~~~~~~~~~ 281 (413)
..-++||.|+-.+ |+.| .|... + .+.++-.++..++....|+. ..++......
T Consensus 385 p~l~~~kliAepwD~g~~gyqvG~Fpd~~---------~--------~aewng~~rD~vr~F~~G~~~~~~~~a~rl~gS 447 (697)
T COG1523 385 PVLSGVKLIAEPWDIGPGGYQVGNFPDSP---------R--------WAEWNGRFRDDVRRFWRGDAGLVGEFAKRLAGS 447 (697)
T ss_pred ccccCceeeecchhhcCCCcccccCCCcc---------c--------hhhhCCcccccccceeeCCCccHHHHHHHhhcC
Confidence 1347888886432 2211 22100 1 12223333444444444432 1222222111
Q ss_pred CCc---ccccCCcceecccCCCCCcCCCC-----------------------------CCC--------C-hhHHHHHHH
Q 015125 282 PGV---MGWWPSRAVTFLDNHDTGSTQAH-----------------------------WPF--------P-SNHIMEGYA 320 (413)
Q Consensus 282 ~~~---~~~~p~~~v~flenHD~~R~~~~-----------------------------~~~--------~-~~~~~la~a 320 (413)
... .+..|..+|+|+++||.-.+... ++. . ....+...+
T Consensus 448 ~d~~~~~~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~ 527 (697)
T COG1523 448 SDLYKRNGRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLA 527 (697)
T ss_pred cchhhccCCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHH
Confidence 111 22457789999999999542210 000 0 112455566
Q ss_pred HHhcCCCeeEEecCcccC--------------------Cc-h---hHHHHHHHHHHHHHhCcccCCCCe
Q 015125 321 YILMHPGIPSVFYDHFYD--------------------WG-D---SIHNQIVKLMDVRRQQDIHSRSSI 365 (413)
Q Consensus 321 ~ll~~pGiP~Iy~G~E~g--------------------w~-~---~l~~~i~~L~~lR~~~p~l~~G~~ 365 (413)
.+++..|+||+-.|||++ |+ . +++.+++.||+||+++|+++...+
T Consensus 528 tlllsqG~pml~~gDe~~rtq~gnnNsYcqdn~inwlDW~~~~~~~l~~f~~~lIaLRk~~~af~~~~f 596 (697)
T COG1523 528 TLLLSQGTPMLLAGDEFGRTQYGNNNAYCQDNEINWLDWSTEANNDLVEFTKGLIALRKAHPAFRRRSF 596 (697)
T ss_pred HHHhhcCCcccccccccccccccccccccCCcccceeccCccccHHHHHHHHHHHHHhhhcchhcccch
Confidence 667789999999999963 66 2 799999999999999999998433
No 34
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.5e-38 Score=287.89 Aligned_cols=360 Identities=20% Similarity=0.351 Sum_probs=262.3
Q ss_pred cccccCCceeEEEeeecCCCCCccHHHHHhhhh-hHHHcCCCEEEcCCCCCCCC--------CCCCCcccCCCCCCCCCC
Q 015125 18 GAVIRNGREILFQGFNWESCKHDWWRNLERKVP-DISKSGFTSVWLPPATHSFA--------PEGYLPQNLYSLNSSYGS 88 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~-yLk~lGv~~I~L~Pi~~~~~--------~~gY~~~d~~~id~~~Gt 88 (413)
-+++..+|.+|+|+|+|. |..|....+ .|+--|+-+|+++|+.|.-. ..+|+|.. |.++++-|.
T Consensus 21 ~t~~~~~R~tmVHLFEWK------W~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGN 93 (504)
T KOG2212|consen 21 STNTQQGRTTIVHLFEWK------WVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGN 93 (504)
T ss_pred CchhhcCcceEEEEEEee------hHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCC
Confidence 356778999999999999 777666555 67889999999999998642 24799998 899999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcCCC-C----CCCCccc-----ccCC---CCCCCCCCC----eeccCCC-CCC
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTT-Q----GHGGKYN-----RYDG---IPLSWDEHA----VTSCTGG-LGN 150 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~-~----~~~~~y~-----~~~~---~~~~~~~~~----~~~~~~~-~~~ 150 (413)
++||+.||..|.+.|+|+++|+|+|||+... . +..+.+. .|.+ ...+|++.. .+...+- ...
T Consensus 94 E~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~ 173 (504)
T KOG2212|consen 94 EDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDAT 173 (504)
T ss_pred HHHHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchh
Confidence 9999999999999999999999999999621 1 1111111 1111 124555521 1111110 112
Q ss_pred CcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhCC-----------CeEEEcc
Q 015125 151 GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARP-----------IFSVGEY 219 (413)
Q Consensus 151 ~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~~-----------~~~vgE~ 219 (413)
+...|.+-++-|||..+..||..+++++..++ +.||.|||.||+|||++.-+..+...+++ .|++-|+
T Consensus 174 ~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~f~s~srpfi~qEV 252 (504)
T KOG2212|consen 174 QVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGDIKAILDKLHNLNSDWFPSGSKPFIYQEV 252 (504)
T ss_pred hhhcceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHHHHHHHHHHhhcccccccCCCCceehhhh
Confidence 35677888999999999999999999999999 99999999999999999999988887762 3555555
Q ss_pred cCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhccc-hhhhhhhcCCCCCcccccCC-cceeccc
Q 015125 220 WDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKPPGVMGWWPS-RAVTFLD 297 (413)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g~-~~~~~~~~~~~~~~~~~~p~-~~v~fle 297 (413)
.+.. |++ -.-..|.+ +-.+-.|.+...+-.+++++ .+.+..+|+.. ++..|. +.++|++
T Consensus 253 ID~G----gE~--------v~~~dY~g----~G~~TeF~f~~~ig~~~r~~~~~kyL~nwG~~---wGf~~s~~~L~FvD 313 (504)
T KOG2212|consen 253 IDLG----GEP--------IKSSDYFG----NGRVTEFKFGAKLGTVIRKWNKMKYLKNWGEG---WGFMPSDRALVFVD 313 (504)
T ss_pred hhcC----Cce--------eecccccC----CceeeeeechHHHHHHHhcchhHHHHHhcCCc---cCcCCCcceEEEec
Confidence 5421 111 01112322 22444556667777777654 56778888854 444555 8999999
Q ss_pred CCCCCcCCCC-----CCC-ChhHHHHHHHHHhcCC-CeeEEecCccc----------------------------CCch-
Q 015125 298 NHDTGSTQAH-----WPF-PSNHIMEGYAYILMHP-GIPSVFYDHFY----------------------------DWGD- 341 (413)
Q Consensus 298 nHD~~R~~~~-----~~~-~~~~~~la~a~ll~~p-GiP~Iy~G~E~----------------------------gw~~- 341 (413)
|||++|..+. +.+ ..++++||.+|+|+.| |+|-++..--| ||-.
T Consensus 314 NHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D~~PP~~~~~~i~SP~Fn~D~tC~~GWvCE 393 (504)
T KOG2212|consen 314 NHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHPYGFTRVMSSFAFDVNDWVPPPNNNGVIKSPTFNPDTTCGNGWVCE 393 (504)
T ss_pred cCcccccCCCCcceEEEecchhhhhhhhhhheecccCcchhheeeeeecCCCCCCCCCCcceecceeCCCCcccCceeee
Confidence 9999996543 322 4578999999999999 99999886543 3433
Q ss_pred hHHHHHHHHHHHHHhCcccCCCCeEEE-EecCCEEEEEECCEEEEEEcCCCCC--------CCCCCcEEeeeCCc
Q 015125 342 SIHNQIVKLMDVRRQQDIHSRSSIKIL-EAQSNLYSAIIGDKVCMKIGDGSWC--------PAGKEWTLATSGHK 407 (413)
Q Consensus 342 ~l~~~i~~L~~lR~~~p~l~~G~~~~~-~~~~~~~~~~r~~~~lv~lnn~~~~--------~~~~~~~~~~s~~~ 407 (413)
.-...|+.|..+|..- +.-.++-+ ....+.++|.|+++..+++||+... .+++++++++||..
T Consensus 394 HRWrqI~~Mv~FrnAV---~~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d~s~~l~T~LPAGtYCDviSG~~ 465 (504)
T KOG2212|consen 394 HRWRQIRNMVNFRNAV---DGTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWDFSLTLQTGLPAGTYCDVISGDK 465 (504)
T ss_pred chHHHHHHHHhhhhhc---CCccccceeeCCCcEEEEecCCccEEEEeCcchhHHHHHhcCCCCCceeeeecccc
Confidence 2467899999999875 33344444 4447899999999999999996532 35688888888853
No 35
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=6.6e-37 Score=319.72 Aligned_cols=185 Identities=17% Similarity=0.195 Sum_probs=145.3
Q ss_pred CCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 36 SCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 36 ~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
+.++++|++++++|+||++||||+|||+||+++. ++|||++.||+.|+|+||++++|++||++||++||+||+|+|+|
T Consensus 9 ~~~~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpN 88 (825)
T TIGR02401 9 LRAGFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPN 88 (825)
T ss_pred eCCCCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 3467899999999999999999999999999874 67999999999999999999999999999999999999999999
Q ss_pred cCcCC---CCC--------CCCcccccCCCCCCCCCCC----------------------------------e------e
Q 015125 114 HRVGT---TQG--------HGGKYNRYDGIPLSWDEHA----------------------------------V------T 142 (413)
Q Consensus 114 H~~~~---~~~--------~~~~y~~~~~~~~~~~~~~----------------------------------~------~ 142 (413)
|||.+ ++| ..+.|..|.. .+|++.. + +
T Consensus 89 H~a~~~~~n~wf~dvl~~g~~S~y~~~Fd--idw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~ 166 (825)
T TIGR02401 89 HMAVHLEQNPWWWDVLKNGPSSAYAEYFD--IDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRL 166 (825)
T ss_pred ccccccccChHHHHHHHhCCCCCccCceE--EeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccC
Confidence 99987 443 2355543332 2333210 0 0
Q ss_pred ccC--------------CCCC-------------CCc----------CCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhc
Q 015125 143 SCT--------------GGLG-------------NGS----------TGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV 185 (413)
Q Consensus 143 ~~~--------------~~~~-------------~~~----------~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~ 185 (413)
+.. ..+. .+| +..+...++.++.++|+|.+.....+..|+++.
T Consensus 167 Pi~p~ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g 246 (825)
T TIGR02401 167 PLAPGTLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEG 246 (825)
T ss_pred CcCccchhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcC
Confidence 000 0000 001 111235799999999999999999999999666
Q ss_pred CCCeEeecccCCC--cHHHHHHHHHhhCC-CeEEEc-ccCC
Q 015125 186 GFQDFRFDFARGY--SAKYVKEYIEGARP-IFSVGE-YWDS 222 (413)
Q Consensus 186 gvDGfR~D~a~~i--~~~~~~~~~~~~~~-~~~vgE-~~~~ 222 (413)
-|||+|+|+++++ |..||+.+.+++.+ .+++.| ++..
T Consensus 247 ~vdGlRIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~~ 287 (825)
T TIGR02401 247 LVDGLRIDHIDGLADPEGYLRRLRELVGPARYLVVEKILAP 287 (825)
T ss_pred CCceEEeccccccCChHHHHHHHHHhcCCCceEEEEEeccC
Confidence 6999999999999 88899999988886 677778 5544
No 36
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=1.5e-32 Score=280.83 Aligned_cols=322 Identities=14% Similarity=0.163 Sum_probs=207.2
Q ss_pred eeEEEeeecCCCCC---ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 26 EILFQGFNWESCKH---DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 26 ~~i~~~f~~~~~~~---g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
-.||.+=+--+..+ |+|+..+++ +++||+++++|||++|||+||++||++
T Consensus 401 lrIYE~HvGms~~e~kv~ty~eF~~~---------------------------vt~fFApssRYGTPeDLK~LVD~aH~~ 453 (872)
T PLN03244 401 LRIYECHVGISGSEPKISSFEEFTEK---------------------------VTNFFAASSRYGTPDDFKRLVDEAHGL 453 (872)
T ss_pred ceEEEEEeeecCCCCCcccHHHHhhc---------------------------cCcccccCcccCCHHHHHHHHHHHHHC
Confidence 35888877766666 678777775 679999999999999999999999999
Q ss_pred CCEEEEEEccccCcCCCCCCCCcccccCCCC-CCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHH
Q 015125 103 KVRAMADIVINHRVGTTQGHGGKYNRYDGIP-LSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWL 181 (413)
Q Consensus 103 Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w 181 (413)
||+||||+|+||++.+....- ..|.+.+ ..++.. ..+. ...| +...+|+.+++||++|++++++|
T Consensus 454 GI~VILDvV~NH~~~d~~~GL---~~fDGt~~~Yf~~~-----~~g~-----~~~W-Gs~~fnyg~~EVr~FLLsna~yW 519 (872)
T PLN03244 454 GLLVFLDIVHSYAAADEMVGL---SLFDGSNDCYFHTG-----KRGH-----HKHW-GTRMFKYGDLDVLHFLISNLNWW 519 (872)
T ss_pred CCEEEEEecCccCCCccccch---hhcCCCccceeccC-----CCCc-----cCCC-CCceecCCCHHHHHHHHHHHHHH
Confidence 999999999999998653110 1121100 111110 0000 0112 23568999999999999999999
Q ss_pred HhhcCCCeEeecccCCCc-------------------------HHHHHHHHHhh---CC-CeEEEcccCCCCCCCCCCCC
Q 015125 182 RNTVGFQDFRFDFARGYS-------------------------AKYVKEYIEGA---RP-IFSVGEYWDSCNYNSHGLDY 232 (413)
Q Consensus 182 ~~~~gvDGfR~D~a~~i~-------------------------~~~~~~~~~~~---~~-~~~vgE~~~~~~~~~~~~~~ 232 (413)
+++|||||||+|++..|- ..|++.+.+.+ .| +++|||-..+-+
T Consensus 520 leEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P-------- 591 (872)
T PLN03244 520 ITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYP-------- 591 (872)
T ss_pred HHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCc--------
Confidence 999999999999983332 23666665554 35 678999665421
Q ss_pred ccchhhHhHhhhhccCC-CcccccCccchHHHHHHhccc---hhhhhhhcCCCCCcc--cccCCcceecccCCCCC----
Q 015125 233 NQDSHRQRIINWIDGTG-QLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVM--GWWPSRAVTFLDNHDTG---- 302 (413)
Q Consensus 233 ~~~~~~~~l~~~~~~~~-~~~~~~df~~~~~l~~~~~g~---~~~~~~~~~~~~~~~--~~~p~~~v~flenHD~~---- 302 (413)
.+...+..+| |++..++........+.++.. .+.+-.... ++. .......+.|.||||++
T Consensus 592 -------~vt~Pv~~GGLGFDYKWnMgwmdd~lkylk~~pderw~~~~Itf---sL~~nrr~~ek~~aYsESHDqaLvGd 661 (872)
T PLN03244 592 -------GLCEPTSQGGLGFDYYVNLSAPDMWLDFLDNIPDHEWSMSKIVS---TLIANKEYADKMLSYAENHNQSISGG 661 (872)
T ss_pred -------CccccCCCCCCCccceecCcchHHHHHHHHhCCCcccCHHHHhh---hhhcccCCcceEEEEecccceecccc
Confidence 2222222221 233333333333334444211 122211110 100 11223679999999993
Q ss_pred cCCC-CC-------CCC--------hhHHHHHHHHHhcCCCee-EEecCcccC------C----------------c---
Q 015125 303 STQA-HW-------PFP--------SNHIMEGYAYILMHPGIP-SVFYDHFYD------W----------------G--- 340 (413)
Q Consensus 303 R~~~-~~-------~~~--------~~~~~la~a~ll~~pGiP-~Iy~G~E~g------w----------------~--- 340 (413)
+... .+ ... ...-||+.++++++||.| ++|||+||| | .
T Consensus 662 KTlaf~l~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr~gN~~s~~~arrdW~Lld 741 (872)
T PLN03244 662 RSFAEILFGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPMPSNNFSFSLANRCWDLLE 741 (872)
T ss_pred chHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHccCccceeecccccCCchheeccccCCCccccccccCccccC
Confidence 2111 00 000 012366667788899988 799999986 2 1
Q ss_pred ----hhHHHHHHHHHHHHHhCcccCCCCeEEEE--ecCCEEEEEECCEEEEEEcCCCC---------CCCCCCcEEeeeC
Q 015125 341 ----DSIHNQIVKLMDVRRQQDIHSRSSIKILE--AQSNLYSAIIGDKVCMKIGDGSW---------CPAGKEWTLATSG 405 (413)
Q Consensus 341 ----~~l~~~i~~L~~lR~~~p~l~~G~~~~~~--~~~~~~~~~r~~~~lv~lnn~~~---------~~~~~~~~~~~s~ 405 (413)
+.|..+.+.|++|++++|+|..|...+.. .++.|+||.|+ .+|+|+|..+. +|..+.|+++|+.
T Consensus 742 ~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~-~LLfVfNF~P~~sy~dYrIGVp~~G~Y~eILNS 820 (872)
T PLN03244 742 NEVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISFMRG-PFLFIFNFHPSNSYEGYDVGVEEAGEYQIILNS 820 (872)
T ss_pred ChhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEEEec-CEEEEEeCCCCCCccCCEECCCCCCeEEEEEeC
Confidence 24778999999999999999877554443 34579999997 58888999653 1457899999975
Q ss_pred Cc
Q 015125 406 HK 407 (413)
Q Consensus 406 ~~ 407 (413)
..
T Consensus 821 D~ 822 (872)
T PLN03244 821 DE 822 (872)
T ss_pred Ch
Confidence 43
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=100.00 E-value=4.6e-31 Score=277.04 Aligned_cols=84 Identities=21% Similarity=0.289 Sum_probs=79.4
Q ss_pred CCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 37 CKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 37 ~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
.++++|++++++|+||++||||+|||+||+++. ++|||++.||+.|+|+||++++|++||++||++||+||+|+|+||
T Consensus 14 ~~~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH 93 (879)
T PRK14511 14 HAGFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNH 93 (879)
T ss_pred CCCCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 456789999999999999999999999999875 689999999999999999999999999999999999999999999
Q ss_pred CcCCCC
Q 015125 115 RVGTTQ 120 (413)
Q Consensus 115 ~~~~~~ 120 (413)
|+.+++
T Consensus 94 ~~~~~~ 99 (879)
T PRK14511 94 MAVGGP 99 (879)
T ss_pred ccCcCc
Confidence 999763
No 38
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=99.97 E-value=6.4e-31 Score=264.99 Aligned_cols=168 Identities=21% Similarity=0.330 Sum_probs=132.0
Q ss_pred cccccCCceeEEEeeecCCCCC----cc---HHHHHhh-hhhHHHcCCCEEEcCCCCCCC---CCCCCCcccCCCCCCCC
Q 015125 18 GAVIRNGREILFQGFNWESCKH----DW---WRNLERK-VPDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSY 86 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~~----g~---~~gi~~~-L~yLk~lGv~~I~L~Pi~~~~---~~~gY~~~d~~~id~~~ 86 (413)
.|..+..+=.||.+=++.++.+ -+ |++.++| |++||+||+|||+||||+++. ..+||.|++|++...+|
T Consensus 222 ~p~~P~~sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrY 301 (757)
T KOG0470|consen 222 RPKIPESSLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRY 301 (757)
T ss_pred CCCCChhheEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccc
Confidence 3334443457999999877666 25 9999999 999999999999999999994 36999999999999999
Q ss_pred CCHH------HHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCC--CCCCCCCeeccCCCCCCCcCCCCCC
Q 015125 87 GSEH------LLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP--LSWDEHAVTSCTGGLGNGSTGDNFH 158 (413)
Q Consensus 87 Gt~~------~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
||.+ |||+||++||..||-|+||+|.||++.+.. ..+.-|++.. .+++.. +.+ ..+..
T Consensus 302 gt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~---d~l~~fdGid~~~Yf~~~-------~r~----~h~~~ 367 (757)
T KOG0470|consen 302 GTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSK---DGLNMFDGIDNSVYFHSG-------PRG----YHNSW 367 (757)
T ss_pred cCCCcccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcC---CcchhccCcCCceEEEeC-------Ccc----ccccc
Confidence 9999 999999999999999999999999999432 2222233310 111111 111 01123
Q ss_pred CCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc
Q 015125 159 GVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS 199 (413)
Q Consensus 159 ~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~ 199 (413)
+..-||+.+++|+++|++.++||+.||+|||||+|.+.+|-
T Consensus 368 ~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~ 408 (757)
T KOG0470|consen 368 CSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSML 408 (757)
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhh
Confidence 34568999999999999999999999999999999886654
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=99.94 E-value=2.3e-27 Score=207.80 Aligned_cols=92 Identities=21% Similarity=0.350 Sum_probs=87.7
Q ss_pred eeEEEeeecCCCCC-ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC----CCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSF----APEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (413)
Q Consensus 26 ~~i~~~f~~~~~~~-g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~----~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h 100 (413)
+++.+.|.|+.... |||++|+++|+||++||||+|||+||+++. +++||++.||++++|+|||+++|++||++||
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h 80 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAH 80 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHH
Confidence 37899999986666 899999999999999999999999999988 6899999999999999999999999999999
Q ss_pred HcCCEEEEEEccccCcC
Q 015125 101 QHKVRAMADIVINHRVG 117 (413)
Q Consensus 101 ~~Gi~VilD~V~NH~~~ 117 (413)
++||+||+|+|+||++.
T Consensus 81 ~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 81 ARGIKVILDVVINHTSD 97 (166)
T ss_pred HCCCEEEEEECCCCCCC
Confidence 99999999999999988
No 40
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.87 E-value=2.9e-21 Score=214.78 Aligned_cols=82 Identities=22% Similarity=0.284 Sum_probs=77.9
Q ss_pred CCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 36 SCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 36 ~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
+..+++|++++++|+||++||||+|||+||+++. ++|||++.||+.|+|.||++++|++||++||++||+||+|+|+|
T Consensus 751 ~~~~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~N 830 (1693)
T PRK14507 751 FHKDFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPN 830 (1693)
T ss_pred eCCCCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4557899999999999999999999999999963 68999999999999999999999999999999999999999999
Q ss_pred cCcC
Q 015125 114 HRVG 117 (413)
Q Consensus 114 H~~~ 117 (413)
||+.
T Consensus 831 H~~~ 834 (1693)
T PRK14507 831 HMGV 834 (1693)
T ss_pred ccCC
Confidence 9995
No 41
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=4.6e-19 Score=179.07 Aligned_cols=96 Identities=22% Similarity=0.394 Sum_probs=84.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
+|+..++.||||++|||.++|++|||... |.|||+++|...|+|.+|+.+.|.+||+++|++||.+|+|+|+|||+..
T Consensus 17 tF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 17 TFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred CHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 69999999999999999999999999865 6899999999999999999999999999999999999999999999997
Q ss_pred -C--C--------CCCCcccccCCCCCCCCC
Q 015125 119 -T--Q--------GHGGKYNRYDGIPLSWDE 138 (413)
Q Consensus 119 -~--~--------~~~~~y~~~~~~~~~~~~ 138 (413)
+ + +..|.|..|.+ .+|++
T Consensus 97 g~~N~ww~DVLe~G~~S~ya~yFD--I~W~~ 125 (889)
T COG3280 97 GHENPWWWDVLENGRDSAYANYFD--IDWEE 125 (889)
T ss_pred cccChHHHHHHHhCcCccchhhcc--cccCC
Confidence 3 1 34566665543 44443
No 42
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.79 E-value=1.9e-17 Score=179.40 Aligned_cols=81 Identities=19% Similarity=0.325 Sum_probs=76.2
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCC-CCCCCCCCcccCCCCCCCCC----CHHHHHHHHHHHHHc-CCEEEEEEccc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATH-SFAPEGYLPQNLYSLNSSYG----SEHLLKALLHKMKQH-KVRAMADIVIN 113 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~-~~~~~gY~~~d~~~id~~~G----t~~~~~~Lv~~~h~~-Gi~VilD~V~N 113 (413)
|.|+...++|++||+||+|.|||+||++ +.+.+.|++.||+.|||.|| ++++|++||+++|+. ||+||+|+|+|
T Consensus 129 G~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~N 208 (1464)
T TIGR01531 129 GPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFN 208 (1464)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeec
Confidence 6799999999999999999999999995 55789999999999999995 899999999999996 99999999999
Q ss_pred cCcCCCC
Q 015125 114 HRVGTTQ 120 (413)
Q Consensus 114 H~~~~~~ 120 (413)
|||.+|+
T Consensus 209 HTa~ds~ 215 (1464)
T TIGR01531 209 HTANNSP 215 (1464)
T ss_pred ccccCCH
Confidence 9999994
No 43
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.33 E-value=3.6e-11 Score=120.61 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=110.7
Q ss_pred cccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHH---------------cCCCEEEcCCCCCCC-------------
Q 015125 18 GAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISK---------------SGFTSVWLPPATHSF------------- 69 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~---------------lGv~~I~L~Pi~~~~------------- 69 (413)
+|.+.+. .-|+|+=.-+-+.+|++.|+++.-..|++ .|+|+|+|+||=+..
T Consensus 172 ~~rv~~P-~nILQiHv~TAsp~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff 250 (811)
T PF14872_consen 172 IPRVPAP-RNILQIHVGTASPEGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFF 250 (811)
T ss_pred CcccCCC-ceeEEEecCCCCCCcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCcee
Confidence 5555443 46999999999999999999988887763 699999999986543
Q ss_pred --------------------------------CCCCCCcc--cCCCCCCCC-CC--HHHHHHHHHHHHH---cCCEEEEE
Q 015125 70 --------------------------------APEGYLPQ--NLYSLNSSY-GS--EHLLKALLHKMKQ---HKVRAMAD 109 (413)
Q Consensus 70 --------------------------------~~~gY~~~--d~~~id~~~-Gt--~~~~~~Lv~~~h~---~Gi~VilD 109 (413)
..|||++. -.-+.+|.. +| ++|+-.||+.+|. ..|+||.|
T Consensus 251 ~~~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyD 330 (811)
T PF14872_consen 251 SIRPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYD 330 (811)
T ss_pred eecccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEe
Confidence 13666643 122333322 22 6899999999996 68999999
Q ss_pred EccccCcCCCCC-CCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCC
Q 015125 110 IVINHRVGTTQG-HGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQ 188 (413)
Q Consensus 110 ~V~NH~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvD 188 (413)
+|+.|.-..+.. .++.| +.+ .+=+ .-|+|+.+|.||+-+++.=+.=+ ++|+|
T Consensus 331 lVyGHADNQ~~~LLn~~f--lkG-------------PnMY-----------GQdlnhq~P~VRAILLEmQRRK~-n~GaD 383 (811)
T PF14872_consen 331 LVYGHADNQALDLLNRRF--LKG-------------PNMY-----------GQDLNHQNPVVRAILLEMQRRKI-NTGAD 383 (811)
T ss_pred eecccccchhhHhhhhhh--ccC-------------Cccc-----------cccccccChHHHHHHHHHHHhhc-ccCCc
Confidence 999998775431 11111 110 1101 23799999999999998877766 99999
Q ss_pred eEeecccCCC
Q 015125 189 DFRFDFARGY 198 (413)
Q Consensus 189 GfR~D~a~~i 198 (413)
|+|+|-+..+
T Consensus 384 GIRVDGgQDF 393 (811)
T PF14872_consen 384 GIRVDGGQDF 393 (811)
T ss_pred eeEecccccc
Confidence 9999998765
No 44
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=99.16 E-value=1e-09 Score=111.15 Aligned_cols=203 Identities=18% Similarity=0.280 Sum_probs=125.6
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHHHHHh---------hcCCCeEeecccCCCcHHHHHHH---HHhhC----------CCe
Q 015125 157 FHGVPNIDHTQHFVRKDIIAWLRWLRN---------TVGFQDFRFDFARGYSAKYVKEY---IEGAR----------PIF 214 (413)
Q Consensus 157 ~~~~~dln~~~~~vr~~l~~~~~~w~~---------~~gvDGfR~D~a~~i~~~~~~~~---~~~~~----------~~~ 214 (413)
|.-..|+|-+||-||++.+.|+.|++. +-.+||+|+||+.++..+.++.. .+++. ..+
T Consensus 140 fLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~An~Hl 219 (809)
T PF02324_consen 140 FLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANANKHL 219 (809)
T ss_dssp --SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHHCTC-
T ss_pred eEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhHhhhh
Confidence 344568999999999999999999994 55699999999999999887643 22221 255
Q ss_pred EEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchHHHHHHhcc------chhhhhhhcC--CCCCccc
Q 015125 215 SVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG------QFWRLRDAQG--KPPGVMG 286 (413)
Q Consensus 215 ~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~~l~~~~~g------~~~~~~~~~~--~~~~~~~ 286 (413)
.|-|.|... =..|+...++....+|..++..+...+.. ....+.+.-- +....-.
T Consensus 220 SilE~ws~n-----------------d~~y~~~~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d~~e 282 (809)
T PF02324_consen 220 SILEAWSSN-----------------DPDYVKDTGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSNDSTE 282 (809)
T ss_dssp -EESSSTTT-----------------HHHHHHHTTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE--S
T ss_pred eeeeccccC-----------------ChHHHhcCCCceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccCCcC
Confidence 677999752 12556666667788999988888887622 1233333211 0000001
Q ss_pred ccCCcceecccCCCCCc-----------CC---CC-----------------------CCCChhHHHHHHHHHhcC-CCe
Q 015125 287 WWPSRAVTFLDNHDTGS-----------TQ---AH-----------------------WPFPSNHIMEGYAYILMH-PGI 328 (413)
Q Consensus 287 ~~p~~~v~flenHD~~R-----------~~---~~-----------------------~~~~~~~~~la~a~ll~~-pGi 328 (413)
..+.....|+.+||.+- +. .- ..+....+..+||+||+- ..|
T Consensus 283 n~a~pNYsFvrAHDsevQ~vI~~II~~~i~~~~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllLtNKDTV 362 (809)
T PF02324_consen 283 NEAQPNYSFVRAHDSEVQTVIAQIIKDKINPNSDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLLTNKDTV 362 (809)
T ss_dssp SESS-EEEES-BSSTTTHHHHHHHHHHHT-TTTCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHHH-SSSE
T ss_pred CcccCceeeeecccHHHHHHHHHHHHhhcCCcccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHhCCCCC
Confidence 12235679999999961 00 00 011223489999999987 599
Q ss_pred eEEecCccc-------CCchhHHHHHHHHHHHHHhCcccCCCCeEEEE----ec-CCEEEEEE
Q 015125 329 PSVFYDHFY-------DWGDSIHNQIVKLMDVRRQQDIHSRSSIKILE----AQ-SNLYSAII 379 (413)
Q Consensus 329 P~Iy~G~E~-------gw~~~l~~~i~~L~~lR~~~p~l~~G~~~~~~----~~-~~~~~~~r 379 (413)
|.|||||-| .-+.+.++.|..|++-|.++ ..|....-. .+ .+++.-.|
T Consensus 363 PRVYYGDLYtDdGQYMa~KSpYyDaI~tLLKaRikY---vaGGQtM~~~~~~~~~~~vLtSVR 422 (809)
T PF02324_consen 363 PRVYYGDLYTDDGQYMATKSPYYDAITTLLKARIKY---VAGGQTMAVTYLNGDNSGVLTSVR 422 (809)
T ss_dssp EEEEHHHHBESSSSTTTSB-TTHHHHHHHHHHHHHH-----S-EEEEE--EEETTTSEEEEEE
T ss_pred ceEEecccccccchhhhhcCchHHHHHHHHHHHHHh---hcCCceeeeecccCCCCceEEEEe
Confidence 999999876 34467899999999999999 455443322 23 45888877
No 45
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.92 E-value=2.3e-09 Score=105.57 Aligned_cols=85 Identities=14% Similarity=0.255 Sum_probs=75.8
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCCCCH------HHHHHHHHHHH-HcCCEEEEEEc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSE------HLLKALLHKMK-QHKVRAMADIV 111 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~Gt~------~~~~~Lv~~~h-~~Gi~VilD~V 111 (413)
|.|..=.++|..++++|+|.|+++|+.+.. |...|++.|...++|.+... ++++++|.+++ +.||.+|.|+|
T Consensus 19 G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 19 GPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred CCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 568888899999999999999999999975 57899999999999887553 69999999996 69999999999
Q ss_pred cccCcCCCCCCCC
Q 015125 112 INHRVGTTQGHGG 124 (413)
Q Consensus 112 ~NH~~~~~~~~~~ 124 (413)
+||||.+++|...
T Consensus 99 ~NHtA~nS~Wl~e 111 (423)
T PF14701_consen 99 LNHTANNSPWLRE 111 (423)
T ss_pred eccCcCCChHHHh
Confidence 9999999987543
No 46
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=2.1e-06 Score=89.66 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=71.6
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCCC------CHHHHHHHHHHHHH-cCCEEEEEEc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYG------SEHLLKALLHKMKQ-HKVRAMADIV 111 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~G------t~~~~~~Lv~~~h~-~Gi~VilD~V 111 (413)
|-|+.=+.+|.-.|+.|.|-|+++|+.+-. +..-|+..|-..+++.+- +.+|.++||+.||+ -||--|-|+|
T Consensus 139 Gpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~DvV 218 (1521)
T KOG3625|consen 139 GPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITDVV 218 (1521)
T ss_pred CChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeehhh
Confidence 456677788999999999999999999865 567899999899998876 68999999999996 7999999999
Q ss_pred cccCcCCCC
Q 015125 112 INHRVGTTQ 120 (413)
Q Consensus 112 ~NH~~~~~~ 120 (413)
+||++.+++
T Consensus 219 ~NHtAnns~ 227 (1521)
T KOG3625|consen 219 YNHTANNSK 227 (1521)
T ss_pred hhccccCCc
Confidence 999999883
No 47
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.58 E-value=1.1e-07 Score=96.68 Aligned_cols=93 Identities=19% Similarity=0.311 Sum_probs=64.7
Q ss_pred CceeEEEeeecCCC------CCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC---------CCCCCcccCCCCC----C
Q 015125 24 GREILFQGFNWESC------KHDWWRNLERKVPDISKSGFTSVWLPPATHSFA---------PEGYLPQNLYSLN----S 84 (413)
Q Consensus 24 ~~~~i~~~f~~~~~------~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~---------~~gY~~~d~~~id----~ 84 (413)
++.|||+.|- +|- .+=+-.-|.+..+-+|++||+..|+.|-+.+.. ..||+-+|-|++. .
T Consensus 563 DSqvIYEgFS-NFQ~~~t~~~eytN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~pt 641 (809)
T PF02324_consen 563 DSQVIYEGFS-NFQDFPTTPSEYTNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPT 641 (809)
T ss_dssp HT-EEEE----TTB---SSGGGSHHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-B
T ss_pred hcchhhcccc-ccccCCCChHHHHHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCC
Confidence 4679999985 321 123678899999999999999999999998653 3799999999887 8
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 85 SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 85 ~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+||+.++|+..|+++|+.||+||.|+|++.+-.
T Consensus 642 KYGs~~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 642 KYGSVEDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp TTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred CCCCHHHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 999999999999999999999999999997654
No 48
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.58 E-value=3.3e-07 Score=88.60 Aligned_cols=141 Identities=12% Similarity=0.113 Sum_probs=82.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCC--CCCCCcccCCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFA--PEGYLPQNLYSLNSSYG--SEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~--~~gY~~~d~~~id~~~G--t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
+-+.+.+.|+.|+++|+|+|++-=--.+.. ..-+.|..-+-.....+ +.+=|+.+|++||++||+|..=+.+...+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 568899999999999999999742212110 11222221111112222 25679999999999999999766444332
Q ss_pred CCCC-CCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecc
Q 015125 117 GTTQ-GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 117 ~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~ 194 (413)
.... ..+....++.....+|. ..+.+ ......-||..+|+||+++++.++..++.|.|||+-+|-
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~----~~~~~---------~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDd 162 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWV----RTYED---------ANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDD 162 (311)
T ss_pred CchhhhhhcCchhheecCCCce----eeccc---------CCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 2110 00001111100001111 10100 012233589999999999999999999999999999994
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.52 E-value=1.3e-06 Score=73.29 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=78.1
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc--cCcC-CCCCC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN--HRVG-TTQGH 122 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N--H~~~-~~~~~ 122 (413)
.+-+++||++|+|+|-+.-= +-+..-|-|+..-...|.++ .+-|+++|++||++||+|++=+-++ .... .|
T Consensus 3 ~~~~~~lk~~~v~si~i~a~--~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~H--- 76 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAK--CHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERH--- 76 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcc--cccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhC---
Confidence 45688999999999997431 10123355666666778888 8889999999999999999555444 2111 22
Q ss_pred CCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecc
Q 015125 123 GGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 123 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~ 194 (413)
++|.--. .+|...........+...+...+ ..++++++.++..++.|.+||+=+|.
T Consensus 77 -----------PeW~~~~----~~G~~~~~~~~~~~~~~~~c~ns-~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 77 -----------PEWFVRD----ADGRPMRGERFGYPGWYTCCLNS-PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred -----------CceeeEC----CCCCCcCCCCcCCCCceecCCCc-cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 2232110 01100000000011122333434 45699999999999999999998874
No 50
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=97.97 E-value=0.00041 Score=71.22 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=46.0
Q ss_pred cCCceeEEEeeec-CCCCCccHH-HHHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCC
Q 015125 22 RNGREILFQGFNW-ESCKHDWWR-NLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLN 83 (413)
Q Consensus 22 ~~~~~~i~~~f~~-~~~~~g~~~-gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id 83 (413)
+...|+++|+|-= ++.+=|||- .+.+-++.+++.|.+.|+|+|+++.. ....|++.+-+.++
T Consensus 4 ~R~~Gv~~~l~SL~~~~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~aln 68 (497)
T PRK14508 4 KRKSGILLHITSLPGSYGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAGN 68 (497)
T ss_pred CCceEEEeccccCCCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccC
Confidence 3456899999843 233338995 99999999999999999999999864 23466665544444
No 51
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.87 E-value=0.0015 Score=65.14 Aligned_cols=290 Identities=11% Similarity=0.060 Sum_probs=146.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcC-CCCCCCCCCCCCcccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLP-PATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~-Pi~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
+-+.|.+.++.++++|++.+.|= -.+......--..-|. .++ .+|- .-|+.|++.+|++||+.=|=+-+--++.+
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~ 132 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSPD 132 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTST--THHHHHHHHHHHTT-EEEEEEETTEEESS
T ss_pred CHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhC--CcHHHHHHHHHHCCCeEEEEeccccccch
Confidence 67888899999999999988762 2222211110011222 233 3552 35999999999999999988877766766
Q ss_pred CCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC
Q 015125 119 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198 (413)
Q Consensus 119 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i 198 (413)
+....... +|--. ..+ ... . ......-||+.+|+|++++.+.+..++++.|||.+-+|.-..+
T Consensus 133 S~l~~~hP--------dw~l~----~~~-~~~-~---~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~ 195 (394)
T PF02065_consen 133 SDLYREHP--------DWVLR----DPG-RPP-T---LGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDI 195 (394)
T ss_dssp SCHCCSSB--------GGBTC----CTT-SE--E---CBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-T
T ss_pred hHHHHhCc--------cceee----cCC-CCC-c---CcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCC
Confidence 65433322 22110 000 000 0 0111234899999999999999999889999999999986554
Q ss_pred cH-------HH-------HHHHHHhhC---CCeEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCccchH
Q 015125 199 SA-------KY-------VKEYIEGAR---PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKG 261 (413)
Q Consensus 199 ~~-------~~-------~~~~~~~~~---~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~df~~~~ 261 (413)
.. +. +-++.++++ |.+++ |. |+.+++..++ .+..|.... -.-|- ..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~i-E~---CssGG~R~D~-------g~l~~~~~~----w~SD~--td 258 (394)
T PF02065_consen 196 TEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLI-EN---CSSGGGRFDP-------GMLYYTPQS----WTSDN--TD 258 (394)
T ss_dssp TS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEE-EE----BTTBTTTSH-------HHHCCSSEE----ESBST---S
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEE-Ee---ccCCCCcccc-------chheecccc----ccCCc--cc
Confidence 31 11 112333332 43433 52 3323334432 122232210 00010 00
Q ss_pred HHHHHhccchhhhhhhcCCCCCcccccCC---cceecccCCCCCcCCCCCCCChhHHHHHHHHHhcCCCeeEEecCcccC
Q 015125 262 ILQEAVKGQFWRLRDAQGKPPGVMGWWPS---RAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD 338 (413)
Q Consensus 262 ~l~~~~~g~~~~~~~~~~~~~~~~~~~p~---~~v~flenHD~~R~~~~~~~~~~~~~la~a~ll~~pGiP~Iy~G~E~g 338 (413)
.+... .+..... +...|. ..|.-.-||.+.|... +.+-+..++-|. +-+.++--.
T Consensus 259 a~~R~------~iq~g~s-----~~~p~~~~~~hv~~~p~~~~~r~~~----------l~~r~~~a~~g~-~g~e~dl~~ 316 (394)
T PF02065_consen 259 ALERL------RIQYGTS-----LFYPPEYMGAHVSASPNHQTGRTTP----------LEFRAHVAMFGR-LGLELDLTK 316 (394)
T ss_dssp HHHHH------HHHHHHC-----TTSSGGGEEEEEEHSS-TTTHHHGG----------HHHHHHHHTCSE-EEEESTGCG
T ss_pred hHHHh------hhhcccc-----cccCHHHhCCeEEeccccccCCccc----------ceechhhhhcCC-ceeccCccc
Confidence 11110 0111110 011122 1234455676664332 222222233344 445666667
Q ss_pred CchhHHHHHHHHHHHHHhC-cccCCCCeEEEEec--CCEEEEE---E-CCEEEEEEcC
Q 015125 339 WGDSIHNQIVKLMDVRRQQ-DIHSRSSIKILEAQ--SNLYSAI---I-GDKVCMKIGD 389 (413)
Q Consensus 339 w~~~l~~~i~~L~~lR~~~-p~l~~G~~~~~~~~--~~~~~~~---r-~~~~lv~lnn 389 (413)
++.+-.+.+++.+++-|+. +.++.|++..+... .+..++. . .++.+|++-.
T Consensus 317 ls~~e~~~~~~~ia~YK~~r~li~~G~~yrL~~p~~~~~~~~~~v~~d~~~av~~~~~ 374 (394)
T PF02065_consen 317 LSEEELAAVKEQIAFYKSIRPLIQSGDFYRLDSPDDSNWDAWQVVSPDKSEAVVFVFR 374 (394)
T ss_dssp S-HHHHHHHHHHHHHHHHCHHHHHHSEEEECCTTCCHCEEEEEEE-TTSSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhHHHHhcCCcEEEecCCCccceEEEEEEcCCCCEEEEEEEE
Confidence 8888889999999999987 67778888766532 2343432 2 4455554443
No 52
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=8.1e-05 Score=73.64 Aligned_cols=140 Identities=14% Similarity=0.086 Sum_probs=81.5
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCC--CCCCCcccC-----CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFA--PEGYLPQNL-----YSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~--~~gY~~~d~-----~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
+=+.+.+.|+.|+.||||+|+..=...+.. .....|..- ..++ ++-+=|+.+|++||++||+|+-=+-+-
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~---~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVD---PGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCC---CCCChHHHHHHHHHhcCCeeeechhhc
Confidence 667899999999999999999543222211 111112110 1122 224568999999999999998654444
Q ss_pred cCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeec
Q 015125 114 HRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFD 193 (413)
Q Consensus 114 H~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D 193 (413)
-++.... .+.. ..++|- ....+++-... ...+....=||-.+|+||++|.+.+...+..|.|||+-||
T Consensus 139 ~~a~~~s----~~~~---~~p~~~----~~~~~~~~~~~-~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfD 206 (418)
T COG1649 139 RMAPPTS----PLTK---RHPHWL----TTKRPGWVYVR-HQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFD 206 (418)
T ss_pred ccCCCCC----hhHh---hCCCCc----ccCCCCeEEEe-cCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecc
Confidence 4444211 0000 001111 00011111000 0000023347888999999999999999999999999999
Q ss_pred cc
Q 015125 194 FA 195 (413)
Q Consensus 194 ~a 195 (413)
-.
T Consensus 207 d~ 208 (418)
T COG1649 207 DY 208 (418)
T ss_pred ee
Confidence 53
No 53
>PF07821 Alpha-amyl_C2: Alpha-amylase C-terminal beta-sheet domain; InterPro: IPR012850 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C terminus. This domain is organised as a five-stranded anti-parallel beta-sheet [, ]. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0005975 carbohydrate metabolic process; PDB: 1AVA_B 1BG9_A 1AMY_A 1RP8_A 2QPU_A 3BSG_A 2QPS_A 3BSH_A 1RP9_A 1HT6_A ....
Probab=97.80 E-value=8.7e-05 Score=52.49 Aligned_cols=53 Identities=58% Similarity=1.072 Sum_probs=44.0
Q ss_pred CCCCeEEEEecCCEEEEEECCEEEEEEcCCCCCCCCCCcEEeeeCCceEEeeC
Q 015125 361 SRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 413 (413)
Q Consensus 361 ~~G~~~~~~~~~~~~~~~r~~~~lv~lnn~~~~~~~~~~~~~~s~~~~~~~~~ 413 (413)
....++++..+.++++-.-+++++|-|+..+++|++.+|+++.+|..|+||.|
T Consensus 7 ~~S~v~I~~Ae~d~YaA~Id~kv~~KiGp~~~~P~~~~w~~a~~G~dyaVWek 59 (59)
T PF07821_consen 7 CRSKVKILAAEADLYAAIIDDKVIMKIGPRDWSPSGSGWKLAASGDDYAVWEK 59 (59)
T ss_dssp TT--EEEEEEETTEEEEEETTTEEEEESS-GGS---TTEEEEEEETTEEEEEE
T ss_pred CCCceEEEEecCCcEEEEECCeEEEEECCCccccCCCCcEEEeECCcEEEEeC
Confidence 46678999999999999899999999999999998889999999999999975
No 54
>PLN02635 disproportionating enzyme
Probab=97.80 E-value=0.00042 Score=71.38 Aligned_cols=60 Identities=13% Similarity=0.023 Sum_probs=44.2
Q ss_pred cCCceeEEEeeecCC-CCCccHHH-HHhhhhhHHHcCCCEEEcCCCCCCC-----CCCCCCcccCCC
Q 015125 22 RNGREILFQGFNWES-CKHDWWRN-LERKVPDISKSGFTSVWLPPATHSF-----APEGYLPQNLYS 81 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~-~~~g~~~g-i~~~L~yLk~lGv~~I~L~Pi~~~~-----~~~gY~~~d~~~ 81 (413)
+...+|++|+|-=.+ ++=|||-. ..+-++.+++.|.+.++|+|+++.. ....|++.+-+.
T Consensus 27 ~R~~Gvll~l~SLps~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~fa 93 (538)
T PLN02635 27 RRRAGILLHPTSLPGPYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDANC 93 (538)
T ss_pred CcceEEEEccccCCCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcccccccc
Confidence 345689999996432 22289976 5589999999999999999999873 355666655443
No 55
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=97.69 E-value=0.00016 Score=56.33 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCcccCCCCeEEEEe----cCCEEEEEE---CCEEEEEEcCCCC
Q 015125 346 QIVKLMDVRRQQDIHSRSSIKILEA----QSNLYSAII---GDKVCMKIGDGSW 392 (413)
Q Consensus 346 ~i~~L~~lR~~~p~l~~G~~~~~~~----~~~~~~~~r---~~~~lv~lnn~~~ 392 (413)
++|+||++|+++|+|+.|....+.. ++.++++.| ++.++|++|.+..
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~ 54 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDE 54 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCC
Confidence 5899999999999999998877653 456777777 3577888888664
No 56
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.57 E-value=0.00084 Score=65.90 Aligned_cols=148 Identities=15% Similarity=0.141 Sum_probs=81.8
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEcCCCCCCCC-----CCCCC------cccC--CCCC--CCCCCHHHHHHHHHHHHHcC
Q 015125 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFA-----PEGYL------PQNL--YSLN--SSYGSEHLLKALLHKMKQHK 103 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~-----~~gY~------~~d~--~~id--~~~Gt~~~~~~Lv~~~h~~G 103 (413)
+-+.+.+.++.+++.|| ++|+|=+...... +..|. +..+ +..+ .+| .+.++||+++|++|
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~F---Pdp~~mi~~Lh~~G 98 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRW---PNPKGMIDELHEQG 98 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccC---CCHHHHHHHHHHCC
Confidence 67889999999999886 7888864222110 11121 1111 1111 122 26899999999999
Q ss_pred CEEEEEEccccCcCC-CCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcC--CCCCCCCCcCCCCCHHHHHHHHHHHHH
Q 015125 104 VRAMADIVINHRVGT-TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGST--GDNFHGVPNIDHTQHFVRKDIIAWLRW 180 (413)
Q Consensus 104 i~VilD~V~NH~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dln~~~~~vr~~l~~~~~~ 180 (413)
+||++=+.+. +..+ ++. ...+..+.. .....-.....++ .+.. ........-+|+.||++|+...+.++.
T Consensus 99 ~kv~l~v~P~-i~~~~~~~-~~~~~~~~~---~~~~g~~vk~~~G--~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~ 171 (340)
T cd06597 99 VKVLLWQIPI-IKLRPHPH-GQADNDEDY---AVAQNYLVQRGVG--KPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRY 171 (340)
T ss_pred CEEEEEecCc-cccccccc-cccchhHHH---HHHCCEEEEcCCC--CccccccccCCCceeecCCCHHHHHHHHHHHHH
Confidence 9999855442 2211 110 000101100 0000000100111 1000 011122345899999999999999999
Q ss_pred HHhhcCCCeEeecccCCC
Q 015125 181 LRNTVGFQDFRFDFARGY 198 (413)
Q Consensus 181 w~~~~gvDGfR~D~a~~i 198 (413)
++++.|||||-+|+...+
T Consensus 172 ~~~~~Gidg~w~D~~E~~ 189 (340)
T cd06597 172 LVDELGIDGFKTDGGEHV 189 (340)
T ss_pred HHHhcCCcEEEecCCCcc
Confidence 988899999999987643
No 57
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.48 E-value=0.00056 Score=66.28 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=88.3
Q ss_pred ccHHHHHhhhhhHHHcC--CCEEEcCCCCCCCCCCCCCcccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 40 DWWRNLERKVPDISKSG--FTSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lG--v~~I~L~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
.+-+.+.+.++.+++.| +++|||=.=+-. +|.-.| +..| .+|-. .++||+++|++|++|++-+.+ +++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~----~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMK----EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-YIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEeccccc----CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-CCC
Confidence 46888999999999999 677887653321 222123 5555 36653 689999999999999999876 566
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 117 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 117 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
.+++. |..... .++ +....++. ......+ ....-+|+.||++|+...+.++.++ +.|||||-+|..
T Consensus 92 ~~~~~----~~e~~~--~g~----~v~~~~g~--~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gid~~~~D~~ 158 (308)
T cd06593 92 QKSPL----FKEAAE--KGY----LVKKPDGS--VWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLL-DMGVDCFKTDFG 158 (308)
T ss_pred CCchh----HHHHHH--CCe----EEECCCCC--eeeecccCCCcccccCCCHHHHHHHHHHHHHHH-HhCCcEEecCCC
Confidence 55431 111000 000 00000000 0000111 1223579999999999999999987 799999999988
Q ss_pred CCCcH
Q 015125 196 RGYSA 200 (413)
Q Consensus 196 ~~i~~ 200 (413)
..+|.
T Consensus 159 e~~p~ 163 (308)
T cd06593 159 ERIPT 163 (308)
T ss_pred CCCCc
Confidence 76654
No 58
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.27 E-value=0.0024 Score=61.68 Aligned_cols=136 Identities=12% Similarity=0.138 Sum_probs=84.5
Q ss_pred ccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 40 DWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
-+-+.|.+.++.++++|| ++|+|=-=+.. ++ .| +..|+ +|- +.++||+++|++|+|+++=+-+ +++
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~--g~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~i~ 95 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CY--GD-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-FIN 95 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cC--Cc-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-eeC
Confidence 368899999999999995 57776431111 11 23 44553 564 4899999999999999998877 454
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 117 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 117 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
.+++. |.-... ...| ....++ ..+.....+ ....-+|+.||++|+...+.++.++.+.|||||-+|..
T Consensus 96 ~~s~~----~~e~~~-~g~~-----vk~~~g-~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~ 164 (303)
T cd06592 96 TDSEN----FREAVE-KGYL-----VSEPSG-DIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAG 164 (303)
T ss_pred CCCHH----HHhhhh-CCeE-----EECCCC-CCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCC
Confidence 43321 110000 0000 000111 000000111 11335899999999999999999998999999999986
Q ss_pred CC
Q 015125 196 RG 197 (413)
Q Consensus 196 ~~ 197 (413)
..
T Consensus 165 E~ 166 (303)
T cd06592 165 EA 166 (303)
T ss_pred Cc
Confidence 64
No 59
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=97.19 E-value=0.0042 Score=60.41 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=92.7
Q ss_pred ccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCC--CEEEcCCCCCC--CCCCCCCc-ccCCCCCC-CCCC
Q 015125 15 TDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGF--TSVWLPPATHS--FAPEGYLP-QNLYSLNS-SYGS 88 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~--~~~~gY~~-~d~~~id~-~~Gt 88 (413)
+.++|.++-| ........ +-+.+.+.++.+++.|| ++|||- ..-. ....||.. .+ +..|+ +|-
T Consensus 3 ~p~~P~wa~G--~~~~~~~~------s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP- 71 (317)
T cd06594 3 QPELPDWAYG--GAILGLQG------GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP- 71 (317)
T ss_pred CCCCchhhhC--cEEeeeeC------CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC-
Confidence 4567888775 32222222 58999999999999765 678874 3211 01123321 12 34453 443
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCC
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQ 167 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~ 167 (413)
+.++||+++|++|++|++-+. -++..+++.. |..-.. ..+ .....++ .+.....+ ....-+|+.|
T Consensus 72 --dp~~mi~~Lh~~G~~~~~~i~-P~v~~~~~~~---y~~~~~--~g~----~vk~~~g--~~~~~~~w~g~~~~~Dftn 137 (317)
T cd06594 72 --GLDELIEELKARGIRVLTYIN-PYLADDGPLY---YEEAKD--AGY----LVKDADG--SPYLVDFGEFDCGVLDLTN 137 (317)
T ss_pred --CHHHHHHHHHHCCCEEEEEec-CceecCCchh---HHHHHH--CCe----EEECCCC--CeeeeccCCCCceeeecCC
Confidence 478999999999999999554 3444432210 111000 000 0000010 00000111 1224578999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEeecccCCCc
Q 015125 168 HFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS 199 (413)
Q Consensus 168 ~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~ 199 (413)
|++|+...+.++..+.+.|||||=+|+-..++
T Consensus 138 p~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~p 169 (317)
T cd06594 138 PAARDWFKQVIKEMLLDLGLSGWMADFGEYLP 169 (317)
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEecCCCCCC
Confidence 99999999999888668999999999876544
No 60
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=97.15 E-value=0.0029 Score=65.51 Aligned_cols=157 Identities=14% Similarity=0.101 Sum_probs=81.5
Q ss_pred EeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCC-CCCCCCCCc----ccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015125 30 QGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATH-SFAPEGYLP----QNLYSLNSSYGSEHLLKALLHKMKQHKV 104 (413)
Q Consensus 30 ~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~-~~~~~gY~~----~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi 104 (413)
-+|..+|.++.+.....+.|+.|+++-||+|+.==..- +..+.+-.. ..+..+.-+-=..+-+|.+|++||+.||
T Consensus 105 YGfls~f~~~~~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gm 184 (559)
T PF13199_consen 105 YGFLSDFDKSKSAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGM 184 (559)
T ss_dssp EEEE---GGGGGHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-
T ss_pred ceEecCCCCcCCchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCc
Confidence 45777777777888999999999999999999732111 000000000 1122333333346889999999999999
Q ss_pred EEEEEEccccCcCCCC--CCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 015125 105 RAMADIVINHRVGTTQ--GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR 182 (413)
Q Consensus 105 ~VilD~V~NH~~~~~~--~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~ 182 (413)
+.|.=..+.-...+-. +.+.++..|...... ........++|. ..+-=+|..|+.-|++|++-++..+
T Consensus 185 kam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~--~~~~~~l~~~w~--------s~lyl~dP~N~~WQ~yI~~q~~~~~ 254 (559)
T PF13199_consen 185 KAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHS--NQDTYDLPDGWP--------SDLYLMDPGNPEWQNYIINQMNKAI 254 (559)
T ss_dssp EEEEEEESSEEETT--S--SS-GGBEEESSSBT--SB-EEEETT-E----------EEEEB-TT-HHHHHHHHHHHHHHH
T ss_pred ceehhHhhhccccCcccccCCchhhhhhccCCC--ccceeecCcccc--------cceEEecCCCHHHHHHHHHHHHHHH
Confidence 9997544432222211 122223223210000 000111111111 1133478899999999999999999
Q ss_pred hhcCCCeEeecccC
Q 015125 183 NTVGFQDFRFDFAR 196 (413)
Q Consensus 183 ~~~gvDGfR~D~a~ 196 (413)
+.+|+||+-+|...
T Consensus 255 ~~~gFDG~hlDq~G 268 (559)
T PF13199_consen 255 QNFGFDGWHLDQLG 268 (559)
T ss_dssp HHHT--EEEEE-S-
T ss_pred HccCCceEeeeccC
Confidence 99999999999864
No 61
>smart00810 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet.
Probab=97.14 E-value=0.0037 Score=44.65 Aligned_cols=51 Identities=57% Similarity=0.940 Sum_probs=45.4
Q ss_pred CCCCeEEEEecCCEEEEEECCEEEEEEcC----CCCCCCCCCcEEeeeCCceEEeeC
Q 015125 361 SRSSIKILEAQSNLYSAIIGDKVCMKIGD----GSWCPAGKEWTLATSGHKYAVWHK 413 (413)
Q Consensus 361 ~~G~~~~~~~~~~~~~~~r~~~~lv~lnn----~~~~~~~~~~~~~~s~~~~~~~~~ 413 (413)
...+++++..+.++++-.-+++++|-|+. ++++|+ +|+...||.+|+||.+
T Consensus 7 ~~S~v~I~~Ae~dlY~A~Id~kv~~KiGp~~~~~~~~P~--~w~~a~sG~~yaVWek 61 (61)
T smart00810 7 SRSSLKILAAEADLYVAMIDEKVIMKIGPRYDVGNLIPS--GFHLAASGNDYAVWEK 61 (61)
T ss_pred CCCceEEEEecCCcEEEEeCCeEEEEECCCCCcCccCCC--CCEEEEECCCEEEEeC
Confidence 46788899999999999889999999999 477787 6999999999999975
No 62
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.73 E-value=0.052 Score=52.39 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=80.0
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCC---CCcccC--CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEG---YLPQNL--YSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~g---Y~~~d~--~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
+-..+.+.|+.+++-|+|+|-+- -..++| |....- ..+...-....++++|+++||++||.+|.=+|.=-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVID----vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk- 85 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVID----VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK- 85 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEE----EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec-
Confidence 45678888999999999999762 222333 322210 11111112246899999999999999999998642
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 116 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 116 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
+..... ..++|. ....++ ..|. +..+..=+|.-+++||+|++++++... ..|+|.+-||-+
T Consensus 86 --D~~la~--------~~pe~a----v~~~~G--~~w~--d~~~~~WvnP~~~evw~Y~i~IA~Eaa-~~GFdEIqfDYI 146 (316)
T PF13200_consen 86 --DPVLAE--------AHPEWA----VKTKDG--SVWR--DNEGEAWVNPYSKEVWDYNIDIAKEAA-KLGFDEIQFDYI 146 (316)
T ss_pred --ChHHhh--------hChhhE----EECCCC--Cccc--CCCCCccCCCCCHHHHHHHHHHHHHHH-HcCCCEEEeeee
Confidence 111000 001111 000011 1111 112233367788999999999999997 899999999976
Q ss_pred C
Q 015125 196 R 196 (413)
Q Consensus 196 ~ 196 (413)
.
T Consensus 147 R 147 (316)
T PF13200_consen 147 R 147 (316)
T ss_pred e
Confidence 4
No 63
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.64 E-value=0.0088 Score=52.38 Aligned_cols=86 Identities=10% Similarity=0.199 Sum_probs=59.8
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR 105 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~ 105 (413)
++.+|.+.|+...+=+-+.=.+.+.+++++||+.|.|. ...-...-+.|..++.-.-..+..+-+..+.++|.+.||+
T Consensus 3 GtF~q~~~~d~~~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmk 80 (166)
T PF14488_consen 3 GTFLQPWSWDIHQNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMK 80 (166)
T ss_pred eEEEccccchhhcCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCE
Confidence 68899999875222245555678999999999999976 1111122233444422223346788899999999999999
Q ss_pred EEEEEccc
Q 015125 106 AMADIVIN 113 (413)
Q Consensus 106 VilD~V~N 113 (413)
|++-+-++
T Consensus 81 v~~Gl~~~ 88 (166)
T PF14488_consen 81 VFVGLYFD 88 (166)
T ss_pred EEEeCCCC
Confidence 99998666
No 64
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.62 E-value=0.016 Score=56.37 Aligned_cols=138 Identities=15% Similarity=0.095 Sum_probs=79.0
Q ss_pred HHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 42 WRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
=+.|.+.++.+++.|| ++|||-+=+-.. .+-.-.+ ++.| .+|- +.++||+++|++|+||++-+.+- ++.+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~--~~~~~~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P~-i~~~ 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSI--EGGKRYV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKPG-LLQD 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccccc--CCCceee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCCc-ccCC
Confidence 5678888899998886 788875421111 0100011 4444 3554 57799999999999999966444 4333
Q ss_pred CCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCC-CCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCC
Q 015125 119 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG-VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARG 197 (413)
Q Consensus 119 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~ 197 (413)
++ .|.-... ..+ +....++. .+.....+.+ ..-+|+.||++++...+.++..+.+.|||||=+|....
T Consensus 101 ~~----~y~e~~~--~g~----~v~~~~g~-~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 101 HP----RYKELKE--AGA----FIKPPDGR-EPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred CH----HHHHHHH--CCc----EEEcCCCC-CcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 32 1111000 000 00000000 0011111111 22478999999999999996655599999999997653
No 65
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=95.99 E-value=0.039 Score=53.70 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=88.3
Q ss_pred ccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHH
Q 015125 15 TDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHL 91 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~ 91 (413)
|.+||.++=| |+..-..-.+-+.+.+.++.+++.+| ++|||-.=+ -.+|.. ++.|+ +|- +
T Consensus 3 ~~lpP~walG-------~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~----~~~~~~---f~~d~~~FP---d 65 (317)
T cd06600 3 PALPPMWALG-------YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHY----MDSYRL---FTWDPYRFP---E 65 (317)
T ss_pred CCCCchHHHH-------HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhh----hCCCCc---eeechhcCC---C
Confidence 4456666554 22222222468888899999988775 677764311 112321 34443 443 5
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCC-CCcCCCCCHHH
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG-VPNIDHTQHFV 170 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~~~v 170 (413)
.++||+++|++|+||++=+.+. ++.+.. +..|... -....++...++ .+.....|.+ ..-+|+.||++
T Consensus 66 p~~~i~~l~~~g~k~~~~~~P~-i~~~~~-----~~~~~~~---~~~~~~v~~~~g--~~~~~~~w~G~~~~~Dftnp~a 134 (317)
T cd06600 66 PKKLIDELHKRNVKLVTIVDPG-IRVDQN-----YSPFLSG---MDKGKFCEIESG--ELFVGKMWPGTTVYPDFTNPDT 134 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeecc-ccCCCC-----ChHHHHH---HHCCEEEECCCC--CeEEEeecCCCccccCCCChHH
Confidence 6799999999999999966443 333211 1111100 000000110111 0000111111 22479999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEeecccCC
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRFDFARG 197 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~D~a~~ 197 (413)
++...+.++..+.+.|||||=+|....
T Consensus 135 ~~ww~~~~~~~~~~~gvdg~w~D~~Ep 161 (317)
T cd06600 135 REWWAGLFSEWLNSQGVDGIWLDMNEP 161 (317)
T ss_pred HHHHHHHHHHHhhcCCCceEEeeCCCC
Confidence 999999999888799999999998764
No 66
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=95.98 E-value=0.14 Score=54.36 Aligned_cols=148 Identities=12% Similarity=0.104 Sum_probs=85.5
Q ss_pred CCceeEEEe---eecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCC----CCCCcccCCCCC-CCCCCHHHHHH
Q 015125 23 NGREILFQG---FNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAP----EGYLPQNLYSLN-SSYGSEHLLKA 94 (413)
Q Consensus 23 ~~~~~i~~~---f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~----~gY~~~d~~~id-~~~Gt~~~~~~ 94 (413)
++..+++|+ ++-+-.....-+.+.+.|+.|+++|+|+|+|-.+....++ .-|-|.++..+- +-|. . +.-
T Consensus 311 ~~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~-~--~aw 387 (671)
T PRK14582 311 KSPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN-R--VAW 387 (671)
T ss_pred CCCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC-H--HHH
Confidence 444578888 3332233356788999999999999999999876554432 234444333331 2222 1 222
Q ss_pred HHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHH
Q 015125 95 LLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDI 174 (413)
Q Consensus 95 Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l 174 (413)
.+ +|++|++|..=+-+=-.+-....... ..+... .... .....+ ...|+-.+|+||+.|
T Consensus 388 ~l--~~r~~v~v~AWmp~~~~~~~~~~~~~---------~~~~~~------~~~~--~~~~~~--~~rl~P~~pe~r~~i 446 (671)
T PRK14582 388 QL--RTRAGVNVYAWMPVLSFDLDPTLPRV---------KRLDTG------EGKA--QIHPEQ--YRRLSPFDDRVRAQV 446 (671)
T ss_pred HH--HHhhCCEEEEeccceeeccCCCcchh---------hhcccc------CCcc--ccCCCC--CcCCCCCCHHHHHHH
Confidence 22 89999999854432211110000000 001000 0000 000011 233888999999999
Q ss_pred HHHHHHHHhhcCCCeEeecc
Q 015125 175 IAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 175 ~~~~~~w~~~~gvDGfR~D~ 194 (413)
.++...++..+.|||+-||-
T Consensus 447 ~~i~~dla~~~~~dGilf~D 466 (671)
T PRK14582 447 GMLYEDLAGHAAFDGILFHD 466 (671)
T ss_pred HHHHHHHHHhCCCceEEecc
Confidence 99999999888999998874
No 67
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=95.88 E-value=0.011 Score=60.22 Aligned_cols=156 Identities=15% Similarity=0.234 Sum_probs=83.0
Q ss_pred ccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHH
Q 015125 15 TDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHL 91 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~ 91 (413)
+.++|.+.-| +|.=.|. ..+-+.+.+.++.+++.|| ++++|-.-+.. +|. + +..|+ +|- +
T Consensus 22 ~~~pP~walG----~~~~~~~---~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~--~-f~~d~~~FP---d 84 (441)
T PF01055_consen 22 PPLPPRWALG----FWQSRWG---YYNQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYG--D-FTWDPERFP---D 84 (441)
T ss_dssp S----GGGGS----EEEEEST---BTSHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTB--T-T-B-TTTTT---T
T ss_pred CCCCchhhhc----eEeecCc---CCCHHHHHHHHHHHHHcCCCccceeccccccc----ccc--c-ccccccccc---c
Confidence 4457777664 3332222 1247788888888888765 56665443221 111 2 34443 343 7
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCC-CCCCCCCCCeeccCCCCCCCcCCCCCC-CCCcCCCCCHH
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG-IPLSWDEHAVTSCTGGLGNGSTGDNFH-GVPNIDHTQHF 169 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~~~~ 169 (413)
.++|++.+|++|++|++-+.+. +..++. .|..+.. ...++ .....++ .......+. ...-+|+.||+
T Consensus 85 ~~~~~~~l~~~G~~~~~~~~P~-v~~~~~----~~~~~~~~~~~~~----~v~~~~g--~~~~~~~w~g~~~~~Dftnp~ 153 (441)
T PF01055_consen 85 PKQMIDELHDQGIKVVLWVHPF-VSNDSP----DYENYDEAKEKGY----LVKNPDG--SPYIGRVWPGKGGFIDFTNPE 153 (441)
T ss_dssp HHHHHHHHHHTT-EEEEEEESE-EETTTT----B-HHHHHHHHTT-----BEBCTTS--SB-EEEETTEEEEEB-TTSHH
T ss_pred hHHHHHhHhhCCcEEEEEeecc-cCCCCC----cchhhhhHhhcCc----eeecccC--CcccccccCCcccccCCCChh
Confidence 8999999999999999998884 555433 1111110 00000 0000111 000000011 13457899999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEeecccCCC
Q 015125 170 VRKDIIAWLRWLRNTVGFQDFRFDFARGY 198 (413)
Q Consensus 170 vr~~l~~~~~~w~~~~gvDGfR~D~a~~i 198 (413)
+++...+.++.+++.+|||||-+|.....
T Consensus 154 a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 154 ARDWWKEQLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp HHHHHHHHHHHHHTTST-SEEEEESTTTB
T ss_pred HHHHHHHHHHHHHhccCCceEEeecCCcc
Confidence 99999999999997779999999995443
No 68
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=95.61 E-value=0.03 Score=54.52 Aligned_cols=136 Identities=15% Similarity=0.135 Sum_probs=78.1
Q ss_pred ccHHHHHhhhhhHHHc--CCCEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 40 DWWRNLERKVPDISKS--GFTSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 40 g~~~gi~~~L~yLk~l--Gv~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
.+-+.+.+.++.+++. -+++|+|=--+ ....++ .+ ++.|+ +|- +.++||+++|++|+|||+-+. -+++
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~--~~~~~~--~~-f~~d~~~FP---dp~~mi~~L~~~G~kv~~~i~-P~v~ 91 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFY--WPKQGW--GE-WKFDPERFP---DPKAMVRELHEMNAELMISIW-PTFG 91 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechh--hcCCCc--ee-EEEChhhCC---CHHHHHHHHHHCCCEEEEEec-CCcC
Confidence 4678888888888886 45777764110 011121 12 44443 554 457999999999999999654 3344
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 117 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 117 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
.+++ .|..... ..+ +....++.. .. ..+ ....-+|+.||++++...+.++..+.+.|||||=+|..
T Consensus 92 ~~~~----~y~e~~~--~g~----~v~~~~g~~--~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~ 158 (319)
T cd06591 92 PETE----NYKEMDE--KGY----LIKTDRGPR--VT-MQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAA 158 (319)
T ss_pred CCCh----hHHHHHH--CCE----EEEcCCCCe--ee-eeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCC
Confidence 4322 1111100 000 000000000 00 011 11345899999999998887765445999999999987
Q ss_pred CC
Q 015125 196 RG 197 (413)
Q Consensus 196 ~~ 197 (413)
..
T Consensus 159 Ep 160 (319)
T cd06591 159 EP 160 (319)
T ss_pred CC
Confidence 64
No 69
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=95.52 E-value=0.017 Score=56.88 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=42.2
Q ss_pred CCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 38 KHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 38 ~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
+.++++...+-|.-.+++|++.|+.+=. .++ ..=...+.|++|++.||++||+||+|+-+.
T Consensus 9 ~~~~~~~~~~yi~~a~~~Gf~~iFTSL~---------------ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 9 GQSSFEENKAYIEKAAKYGFKRIFTSLH---------------IPEDDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp CCS-HHHHHHHHHHHHCTTEEEEEEEE------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEECCCC---------------cCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 3446888888888899999999996521 111 111236789999999999999999999443
No 70
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.048 Score=52.15 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=44.6
Q ss_pred eEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 015125 27 ILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRA 106 (413)
Q Consensus 27 ~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~V 106 (413)
.-+-+|.|. +....-++-|+...+.|++.|+.+=.......+ +-..-|++|++.|++.||+|
T Consensus 4 ~GfSifp~~----~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~--------------~~~~~~~ell~~Anklg~~v 65 (360)
T COG3589 4 LGFSIFPNR----SPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAE--------------LYFHRFKELLKEANKLGLRV 65 (360)
T ss_pred eeEEeccCC----CcchhHHHHHHHHHHcCccceeeecccCCchHH--------------HHHHHHHHHHHHHHhcCcEE
Confidence 345556654 234455566666778899988864322221111 23466999999999999999
Q ss_pred EEEEcc
Q 015125 107 MADIVI 112 (413)
Q Consensus 107 ilD~V~ 112 (413)
|+|+-+
T Consensus 66 ivDvnP 71 (360)
T COG3589 66 IVDVNP 71 (360)
T ss_pred EEEcCH
Confidence 999833
No 71
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=95.38 E-value=0.028 Score=53.11 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=54.0
Q ss_pred CCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC--CCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 015125 23 NGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA--PEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h 100 (413)
.|++|-.+.|+... . .-.-+.+-++.||++|+|+|=|+-..+... ..+| .+++ ...+.|+++|+.|+
T Consensus 4 ~G~~v~~~G~n~~w-~--~~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~------~~~~--~~~~~ld~~v~~a~ 72 (281)
T PF00150_consen 4 NGKPVNWRGFNTHW-Y--NPSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY------NYDE--TYLARLDRIVDAAQ 72 (281)
T ss_dssp TSEBEEEEEEEETT-S--GGGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT------SBTH--HHHHHHHHHHHHHH
T ss_pred CCCeEEeeeeeccc-C--CCCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc------cccH--HHHHHHHHHHHHHH
Confidence 57788888888761 0 112788899999999999998865432110 1111 1111 23578999999999
Q ss_pred HcCCEEEEEEccc
Q 015125 101 QHKVRAMADIVIN 113 (413)
Q Consensus 101 ~~Gi~VilD~V~N 113 (413)
++||+||+|+--.
T Consensus 73 ~~gi~vild~h~~ 85 (281)
T PF00150_consen 73 AYGIYVILDLHNA 85 (281)
T ss_dssp HTT-EEEEEEEES
T ss_pred hCCCeEEEEeccC
Confidence 9999999998443
No 72
>PRK10426 alpha-glucosidase; Provisional
Probab=94.95 E-value=0.12 Score=55.15 Aligned_cols=140 Identities=10% Similarity=0.079 Sum_probs=77.6
Q ss_pred HHHHHhhhhhHHHcC--CCEEEcCCCCCCC--CCCCCCcc-cCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 42 WRNLERKVPDISKSG--FTSVWLPPATHSF--APEGYLPQ-NLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 42 ~~gi~~~L~yLk~lG--v~~I~L~Pi~~~~--~~~gY~~~-d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
-+.+.+.++.+++.| +++|||-- .... ...|...- | +..| .+| .+.++||+++|++|+||++=+-+. +
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~ldd-w~~~~~~~~g~~~~~~-~~~d~~~F---Pdp~~mi~~L~~~G~k~v~~i~P~-v 293 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQD-WSGIRMTSFGKRLMWN-WKWDSERY---PQLDSRIKQLNEEGIQFLGYINPY-L 293 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEec-cccccccccccccccc-ceEChhhC---CCHHHHHHHHHHCCCEEEEEEcCc-c
Confidence 567888999999988 58899841 1110 01111110 1 2333 233 257889999999999999887554 2
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecc
Q 015125 116 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 116 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~ 194 (413)
..+++ .|..-.. ........++. ......+ ....-+|+.||++|+...+.++..+.+.|||||=+|.
T Consensus 294 ~~~~~----~y~e~~~------~gy~vk~~~g~--~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~ 361 (635)
T PRK10426 294 ASDGD----LCEEAAE------KGYLAKDADGG--DYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADF 361 (635)
T ss_pred CCCCH----HHHHHHH------CCcEEECCCCC--EEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeC
Confidence 22221 1110000 00000000000 0000000 0112478999999999999887555599999999997
Q ss_pred cCCCc
Q 015125 195 ARGYS 199 (413)
Q Consensus 195 a~~i~ 199 (413)
...+|
T Consensus 362 ~E~~p 366 (635)
T PRK10426 362 GEYLP 366 (635)
T ss_pred CCCCC
Confidence 65443
No 73
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=94.84 E-value=0.15 Score=50.17 Aligned_cols=135 Identities=12% Similarity=0.112 Sum_probs=78.9
Q ss_pred ccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 40 DWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
.+-+.+.+.++.+++.|| ++|||-+-+.. +|.. ++.|+ +|- +.++|++++|++|++|++=+.+ |+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~---f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v~ 89 (339)
T cd06604 21 YPEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRV---FTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GVK 89 (339)
T ss_pred CCHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCc---eeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-cee
Confidence 367888899999998886 67887543221 2321 34443 554 4689999999999999976544 232
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCC-CCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 117 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFH-GVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 117 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
.+. .|..|... -....+....++ .+.....+. ...-+|+.||++++...+.++..+ +.|||||=+|..
T Consensus 90 ~~~-----~~~~~~e~---~~~g~~v~~~~g--~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~ 158 (339)
T cd06604 90 VDP-----GYDVYEEG---LENDYFVKDPDG--ELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLGVDGIWNDMN 158 (339)
T ss_pred CCC-----CChHHHHH---HHCCeEEECCCC--CEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCCCceEeecCC
Confidence 211 11111100 000000000011 000000111 122368999999999999999987 899999999976
Q ss_pred C
Q 015125 196 R 196 (413)
Q Consensus 196 ~ 196 (413)
.
T Consensus 159 E 159 (339)
T cd06604 159 E 159 (339)
T ss_pred C
Confidence 4
No 74
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=94.78 E-value=0.088 Score=51.72 Aligned_cols=142 Identities=10% Similarity=0.129 Sum_probs=79.5
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+-+.+.+.++.+++.|| ++|||-.-+- .+|. + ++.|+ +|-.+. -++||+++|++|+||++=+.+. +..
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~----~~~~--~-f~~d~~~FPdp~-~~~mi~~L~~~G~k~~~~i~P~-v~~ 92 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYM----DRRR--D-FTLDPVRFPGLK-MPEFVDELHANGQHYVPILDPA-ISA 92 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccc----cCcc--c-eecccccCCCcc-HHHHHHHHHHCCCEEEEEEeCc-ccc
Confidence 56788888888888775 6777643111 1121 2 33443 343221 2899999999999999976543 333
Q ss_pred CCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 118 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
+.. .+.|..|... -....++...++ .......+ ....-+|+.||++++...+.++.++.+.|||||=+|...
T Consensus 93 ~~~--~~~~~~~~e~---~~~g~~v~~~~g--~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 93 NEP--TGSYPPYDRG---LEMDVFIKNDDG--SPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred CcC--CCCCHHHHHH---HHCCeEEECCCC--CEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 211 1112222110 000000000010 00000011 112336899999999999999998878999999999876
Q ss_pred CC
Q 015125 197 GY 198 (413)
Q Consensus 197 ~i 198 (413)
..
T Consensus 166 p~ 167 (339)
T cd06602 166 PS 167 (339)
T ss_pred Cc
Confidence 43
No 75
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=94.70 E-value=0.029 Score=57.95 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=29.7
Q ss_pred CCccH-HHHHhhhhhHHHcCCCEEEcCCCCCCCC--CCCCCcccCCCCCCCC
Q 015125 38 KHDWW-RNLERKVPDISKSGFTSVWLPPATHSFA--PEGYLPQNLYSLNSSY 86 (413)
Q Consensus 38 ~~g~~-~gi~~~L~yLk~lGv~~I~L~Pi~~~~~--~~gY~~~d~~~id~~~ 86 (413)
+=||| ..+.+-++.+++.|+..++|.|+++... ++.|.+.+-+.++|-|
T Consensus 13 GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPly 64 (496)
T PF02446_consen 13 GIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLY 64 (496)
T ss_dssp SS--SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGG
T ss_pred ceecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHH
Confidence 34799 9999999999999999999999998652 3489988888887554
No 76
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=94.59 E-value=0.14 Score=53.07 Aligned_cols=48 Identities=8% Similarity=-0.077 Sum_probs=36.5
Q ss_pred cCCceeEEEeeecCCC-CCccHHHHH-hhhhhHHHcCCCEEEcCCCCCCC
Q 015125 22 RNGREILFQGFNWESC-KHDWWRNLE-RKVPDISKSGFTSVWLPPATHSF 69 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~-~~g~~~gi~-~~L~yLk~lGv~~I~L~Pi~~~~ 69 (413)
+...||++|++-=.+. +=|||-.+. .-++.+++.|....+|.|+++..
T Consensus 13 ~R~~Gvll~l~SL~s~~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~~ 62 (513)
T TIGR00217 13 KRKSGILLQLYSLPSEWGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPAD 62 (513)
T ss_pred CCceEEEeccccCCCCCCccChHHHHHHHHHHHHHcCCcEEEeCCCCCCC
Confidence 4567899999864433 228999888 66688888888888899988753
No 77
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=94.48 E-value=0.19 Score=47.09 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCC
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQ 167 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~ 167 (413)
+++++++.++.+|++|+||++=+--+|.+... ....+
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~-------------------------------------------~~~~~ 85 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF-------------------------------------------ANNLS 85 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc-------------------------------------------cccCC
Confidence 46889999999999999999987544432210 01124
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEeecc
Q 015125 168 HFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 168 ~~vr~~l~~~~~~w~~~~gvDGfR~D~ 194 (413)
++-++.+.+.+..++.++|+||+=+|-
T Consensus 86 ~~~~~~fa~~l~~~v~~yglDGiDiD~ 112 (255)
T cd06542 86 DAAAKAYAKAIVDTVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEee
Confidence 555777777887788899999999996
No 78
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.21 E-value=0.13 Score=50.02 Aligned_cols=137 Identities=9% Similarity=0.079 Sum_probs=78.7
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEcCCCCCC-CC-CCCCCcccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 41 WWRNLERKVPDISKSGF--TSVWLPPATHS-FA-PEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~-~~-~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
+-+.+.+.++.+++.|| ++|+|-.=+-. .. ...|. + ++.| .+|-. .++||+++|++|++|++=+.+- +
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FPd---p~~mi~~L~~~G~k~~~~v~P~-v 94 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFPD---PAGMIADLAKKGVKTIVITEPF-V 94 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCCC---HHHHHHHHHHcCCcEEEEEcCc-c
Confidence 57888889999988775 67777542211 00 01121 2 3444 35543 5789999999999999987543 3
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecc
Q 015125 116 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 116 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~ 194 (413)
..+++ .|..... ..+ -+....++ .+.....+ ....-+|+.||++++...+.++.+. +.|||||=+|.
T Consensus 95 ~~~~~----~y~e~~~--~g~---l~~~~~~~--~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gvdg~w~D~ 162 (317)
T cd06598 95 LKNSK----NWGEAVK--AGA---LLKKDQGG--VPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLI-DQGVTGWWGDL 162 (317)
T ss_pred cCCch----hHHHHHh--CCC---EEEECCCC--CEeeeeccCCCccccCCCCHHHHHHHHHHHHHhh-hCCccEEEecC
Confidence 33332 1110000 000 00100000 00000001 1123467789999999999998885 99999999998
Q ss_pred cC
Q 015125 195 AR 196 (413)
Q Consensus 195 a~ 196 (413)
..
T Consensus 163 ~E 164 (317)
T cd06598 163 GE 164 (317)
T ss_pred CC
Confidence 65
No 79
>PRK10658 putative alpha-glucosidase; Provisional
Probab=94.17 E-value=0.075 Score=56.82 Aligned_cols=137 Identities=11% Similarity=0.074 Sum_probs=76.8
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+=+.+.+-++-+++.|| ++|+|-..+- .+|.-.+ +..|+ +|- +.++||+++|++|+||++=+.+ +++.
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~----~~~~~~~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~i~P-~i~~ 351 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWM----KEFQWCD-FEWDPRTFP---DPEGMLKRLKAKGLKICVWINP-YIAQ 351 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhh----cCCceee-eEEChhhCC---CHHHHHHHHHHCCCEEEEeccC-CcCC
Confidence 34557777777887776 4455433111 1121112 33442 333 4578999999999999987655 3443
Q ss_pred CCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 118 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
+++. |... -....+....+ +.++....| ....-+|+.||++|+...+.++.++ +.|||||-.|...
T Consensus 352 ~s~~-------f~e~---~~~gy~vk~~~--G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~-d~Gvdgfw~D~gE 418 (665)
T PRK10658 352 KSPL-------FKEG---KEKGYLLKRPD--GSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLL-DMGVDCFKTDFGE 418 (665)
T ss_pred CchH-------HHHH---HHCCeEEECCC--CCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHH-hcCCcEEEecCCc
Confidence 3221 1100 00000011011 111111111 2234579999999999999999987 8999999999765
Q ss_pred CCc
Q 015125 197 GYS 199 (413)
Q Consensus 197 ~i~ 199 (413)
.+|
T Consensus 419 ~~p 421 (665)
T PRK10658 419 RIP 421 (665)
T ss_pred eee
Confidence 444
No 80
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=94.14 E-value=0.049 Score=57.16 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=47.6
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC--cHHHHHHHHHhhCC-CeEEEc
Q 015125 158 HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY--SAKYVKEYIEGARP-IFSVGE 218 (413)
Q Consensus 158 ~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i--~~~~~~~~~~~~~~-~~~vgE 218 (413)
.++.-+..+.+.|-+.--.-+..|+++==|||+|+|.+..+ |..+++.+.+.+.+ .+++-|
T Consensus 268 n~L~glRvEd~~VF~~tH~li~~L~~eglidGlRIDHiDGLaDP~gYl~rLR~~~G~~~~I~VE 331 (889)
T COG3280 268 NSLAGLRVEDPAVFEATHRLIFELLREGLIDGLRIDHIDGLADPKGYLRRLRQLVGPDRYIVVE 331 (889)
T ss_pred cchheeeeccHHHHHHHHHHHHHHHHhccccceeecccccccCHHHHHHHHHHhcCCCcEEEEe
Confidence 56777888999999888888999997777999999999887 45677777776653 334334
No 81
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=93.54 E-value=0.33 Score=47.29 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=35.7
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+.++.||+.|+|.|=|=-.... .+ ..+-+.+...+|.++|++.||+|+||+
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~P--------~~-----~g~~~~~~~~~~akrak~~Gm~vlldf 78 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVNP--------YD-----GGYNDLEDVIALAKRAKAAGMKVLLDF 78 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS---------TT-----TTTTSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCHHHHHHhcCCCeEEEEeccCC--------cc-----cccCCHHHHHHHHHHHHHCCCeEEEee
Confidence 56888999999999755221111 11 455678999999999999999999999
No 82
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=93.38 E-value=0.66 Score=45.72 Aligned_cols=126 Identities=9% Similarity=0.002 Sum_probs=72.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCC-------CCCCCHHHHHHHHHHHHHcCCEEEEEE-cc
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN-------SSYGSEHLLKALLHKMKQHKVRAMADI-VI 112 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id-------~~~Gt~~~~~~Lv~~~h~~Gi~VilD~-V~ 112 (413)
..+.|.+.++.++.+++|.++|-=- . ...+.+.+..|=.+. ..+=|.+|+++||+-|.++||.||-.+ ++
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~Hlt-D-d~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~P 93 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHIT-D-SQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTP 93 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeEE-c-CCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCc
Confidence 3778888999999999999997410 0 001111111111111 112289999999999999999999777 45
Q ss_pred ccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcC
Q 015125 113 NHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 186 (413)
Q Consensus 113 NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~g 186 (413)
.|+..-... | +.....+ ...+.. .+.-.....||..+|++.+++.+++...++-|.
T Consensus 94 GH~~a~~~~----~-------p~l~~~~----~~~~~~---~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~ 149 (348)
T cd06562 94 GHTGSWGQG----Y-------PELLTGC----YAVWRK---YCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFP 149 (348)
T ss_pred hhhHHHHHh----C-------hhhhCCC----Cccccc---cccCCCCccccCCChhHHHHHHHHHHHHHHhcC
Confidence 666552110 0 0000000 000000 000011234889999999999999999886554
No 83
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=93.37 E-value=0.89 Score=48.78 Aligned_cols=152 Identities=14% Similarity=0.160 Sum_probs=87.8
Q ss_pred cccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCC--EEEcCCCCCCCCCCCCCcccCCCCC-CCCCCHH
Q 015125 14 QTDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFT--SVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEH 90 (413)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~--~I~L~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~ 90 (413)
.|.++|+|+-| +|.--|. -++++.+++..+..+++||. .+| ..-++==.-.| |.+| ..|++
T Consensus 289 ~P~m~pYWslG----f~~~Rwg---Y~nls~~~dvv~~~~~agiPld~~~------~DiDyMd~ykD-FTvd~~~fp~-- 352 (805)
T KOG1065|consen 289 RPAMPPYWSLG----FQLCRWG---YKNLSVVRDVVENYRAAGIPLDVIV------IDIDYMDGYKD-FTVDKVWFPD-- 352 (805)
T ss_pred CccCCchhhcc----ceecccc---cccHHHHHHHHHHHHHcCCCcceee------eehhhhhcccc-eeeccccCcc--
Confidence 35667888654 4443332 34689999999999999984 444 11111101355 3444 45665
Q ss_pred HHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeec--cCCCCCCC-cCCCCC-CCCCcCCCC
Q 015125 91 LLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTS--CTGGLGNG-STGDNF-HGVPNIDHT 166 (413)
Q Consensus 91 ~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~-~~~~dln~~ 166 (413)
++.+++.+|++|+|+|+=+=++-... ..|..|.. ...+. ..+..+.. ..+.-+ ....=.|+.
T Consensus 353 -~~~fv~~Lh~~G~kyvliidP~is~~------~~y~~y~~-------g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDft 418 (805)
T KOG1065|consen 353 -LKDFVDDLHARGFKYVLIIDPFISTN------SSYGPYDR-------GVAKDVLIKNREGSPKMLGEVWPGSTAFPDFT 418 (805)
T ss_pred -hHHHHHHHHhCCCeEEEEeCCccccC------ccchhhhh-------hhhhceeeecccCchhhhcccCCCcccccccC
Confidence 99999999999999986443221111 11222211 10000 00000000 011111 122335788
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 167 ~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
||++.....+-++.+-++.++||+=+|+-
T Consensus 419 np~~~~Ww~~~~~~fh~~vp~dg~wiDmn 447 (805)
T KOG1065|consen 419 NPAVVEWWLDELKRFHDEVPFDGFWIDMN 447 (805)
T ss_pred CchHHHHHHHHHHhhcccCCccceEEECC
Confidence 99999999998888888999999999983
No 84
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=93.26 E-value=0.22 Score=53.40 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=37.6
Q ss_pred CceeEEEeeecCCCCC---ccHHHHHhhhhhHHHcCCCEEEcCCCCC
Q 015125 24 GREILFQGFNWESCKH---DWWRNLERKVPDISKSGFTSVWLPPATH 67 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~---g~~~gi~~~L~yLk~lGv~~I~L~Pi~~ 67 (413)
.-|+++|+|-=.+..+ |||..+.+-++.+++.|.+.+.|+|++.
T Consensus 143 ~wGv~~qlySLrs~~~~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha 189 (695)
T PRK11052 143 LWGACVQLYTLRSEHNWGIGDFGDLKQMLEDVAKRGGDFIGLNPIHA 189 (695)
T ss_pred ceEEEeccccCCCCCCCCeecHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 3588999997554334 8999999999999999999999999994
No 85
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=92.86 E-value=0.99 Score=46.45 Aligned_cols=47 Identities=11% Similarity=-0.077 Sum_probs=36.1
Q ss_pred CCceeEEEeeecCCCCC---ccHHHHHhhhhhHH-HcCCCEEEcCCCCCCC
Q 015125 23 NGREILFQGFNWESCKH---DWWRNLERKVPDIS-KSGFTSVWLPPATHSF 69 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~---g~~~gi~~~L~yLk-~lGv~~I~L~Pi~~~~ 69 (413)
+.+++-+|++.=.+.+. |||-.+.-++.-.. +-|.+.+.|+|++...
T Consensus 12 ~~~g~~v~L~~~~~~~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~~ 62 (520)
T COG1640 12 MKWGSGVQLYSLRLPGSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHATG 62 (520)
T ss_pred ccccceeEEeeeccCCCCCccchhhHHHHHHHHHHHccCCeEEeccCCccc
Confidence 44566667776555555 89999998888776 9999999999998654
No 86
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=92.79 E-value=0.63 Score=43.96 Aligned_cols=94 Identities=11% Similarity=0.166 Sum_probs=65.3
Q ss_pred ccHHHHHhhhhhHHHcC--CCEEEcCCCCCCCCCCCCCcccC-CCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 40 DWWRNLERKVPDISKSG--FTSVWLPPATHSFAPEGYLPQNL-YSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lG--v~~I~L~Pi~~~~~~~gY~~~d~-~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
.+-+.+.+.++.+++.| +++|+|-+-+... | .++ +..| .+|- +.++||+++|++|++|++-+.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~--~~f~~~~d~~~Fp---dp~~~i~~l~~~g~~~~~~~~P--- 88 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----Y--GDFTFDWDAGKFP---NPKSMIDELHDNGVKLVLWIDP--- 88 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECcccccC----C--ceeeeecChhhCC---CHHHHHHHHHHCCCEEEEEeCh---
Confidence 46888999999998855 5678876543321 1 221 2444 3554 3688999999999999996622
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 116 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 116 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
.||+...+.++..+.+.|||||=+|..
T Consensus 89 -----------------------------------------------------~v~~w~~~~~~~~~~~~Gvdg~w~D~~ 115 (265)
T cd06589 89 -----------------------------------------------------YIREWWAEVVKKLLVSLGVDGFWTDMG 115 (265)
T ss_pred -----------------------------------------------------hHHHHHHHHHHHhhccCCCCEEeccCC
Confidence 226666777776645999999999987
Q ss_pred CCC
Q 015125 196 RGY 198 (413)
Q Consensus 196 ~~i 198 (413)
...
T Consensus 116 E~~ 118 (265)
T cd06589 116 EPS 118 (265)
T ss_pred CCC
Confidence 554
No 87
>PLN02950 4-alpha-glucanotransferase
Probab=92.53 E-value=0.31 Score=53.92 Aligned_cols=72 Identities=21% Similarity=0.220 Sum_probs=60.3
Q ss_pred CCceeEEEeeecCCCCC---ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC------CCCCCcccCCCCCCCCCCHHHHH
Q 015125 23 NGREILFQGFNWESCKH---DWWRNLERKVPDISKSGFTSVWLPPATHSFA------PEGYLPQNLYSLNSSYGSEHLLK 93 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~---g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~------~~gY~~~d~~~id~~~Gt~~~~~ 93 (413)
.+.|+++|+|-=.+..+ |||..+.+-++.+++.|.+.|+|+|+++... +..|++.+-++++|-|=+.+++.
T Consensus 260 R~~Gi~~~l~SLrS~~s~GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l~ 339 (909)
T PLN02950 260 RGAGVAVPVFSIRSEEDVGVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALS 339 (909)
T ss_pred cceEEEEecccCCCCCCCCeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHHH
Confidence 45689999997655543 8999999999999999999999999998652 24899999999999998887764
Q ss_pred H
Q 015125 94 A 94 (413)
Q Consensus 94 ~ 94 (413)
+
T Consensus 340 ~ 340 (909)
T PLN02950 340 E 340 (909)
T ss_pred h
Confidence 3
No 88
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=92.19 E-value=0.38 Score=46.17 Aligned_cols=148 Identities=13% Similarity=0.070 Sum_probs=82.9
Q ss_pred ccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCC--CEEEcCCCCCC-CC----CCCCCcccCCCCCC-CC
Q 015125 15 TDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGF--TSVWLPPATHS-FA----PEGYLPQNLYSLNS-SY 86 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~-~~----~~gY~~~d~~~id~-~~ 86 (413)
+.+||.++=| |+++-....+-+.+.+-++.+++.|| ++|||=.=+.. .. ..+|.. ++.|+ +|
T Consensus 4 ~~~~P~walG-------~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~---ft~d~~~F 73 (292)
T cd06595 4 IPLLPRYAFG-------NWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTG---YSWNRKLF 73 (292)
T ss_pred CCCCchHHHH-------hHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcce---eEEChhcC
Confidence 3456666543 33332222367888899999988665 66766221111 00 012221 44543 55
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCC
Q 015125 87 GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHT 166 (413)
Q Consensus 87 Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 166 (413)
- +.++||+++|++|+|||+-+.+.. +.+.. ...|..+... .... .. -....-+|+.
T Consensus 74 P---dp~~mi~~Lh~~G~k~v~~v~P~~-~~~~~--~~~y~~~~~~-~~~~--------~~---------~~~~~~~D~t 129 (292)
T cd06595 74 P---DPEKLLQDLHDRGLKVTLNLHPAD-GIRAH--EDQYPEMAKA-LGVD--------PA---------TEGPILFDLT 129 (292)
T ss_pred C---CHHHHHHHHHHCCCEEEEEeCCCc-ccCCC--cHHHHHHHHh-cCCC--------cc---------cCCeEEecCC
Confidence 4 568999999999999999886642 21110 0112111110 0000 00 0011246899
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 167 ~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
||+.++...+.++.-+.+.||||+=.|...
T Consensus 130 np~a~~~w~~~~~~~~~~~Gidg~W~D~~E 159 (292)
T cd06595 130 NPKFMDAYFDNVHRPLEKQGVDFWWLDWQQ 159 (292)
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEecCCC
Confidence 999998776666555559999999999643
No 89
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=91.95 E-value=0.32 Score=52.17 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=59.1
Q ss_pred CceeEEEeeecCCCCC---ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-----C-CCCCcccCCCCCCCCCCHHHHH
Q 015125 24 GREILFQGFNWESCKH---DWWRNLERKVPDISKSGFTSVWLPPATHSFA-----P-EGYLPQNLYSLNSSYGSEHLLK 93 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~---g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-----~-~gY~~~d~~~id~~~Gt~~~~~ 93 (413)
+.|+++|+|-=.+.++ |||-.+.+-++.+++.|.+.|+|+|+++... . ..|++.+-++++|-|=+.+++.
T Consensus 61 ~aGill~l~SLrS~~s~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 61 GSGMALPVFSLRSAESVGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred hheeeeccccCCCCCCCCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 4689999997665544 7999999999999999999999999998752 2 4899999999998888876664
No 90
>smart00632 Aamy_C Aamy_C domain.
Probab=91.92 E-value=0.47 Score=36.11 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=26.5
Q ss_pred cCCEEEEEECCEEEEEEcCCCCC--------CCCCCcEEeeeC
Q 015125 371 QSNLYSAIIGDKVCMKIGDGSWC--------PAGKEWTLATSG 405 (413)
Q Consensus 371 ~~~~~~~~r~~~~lv~lnn~~~~--------~~~~~~~~~~s~ 405 (413)
++++++|.|+++.+|+||++... .+.+.|+++++|
T Consensus 7 ~~~~laF~Rg~~g~VaiN~~~~~~~~~~~t~lp~G~Y~d~l~g 49 (81)
T smart00632 7 GDNQIAFERGSKGFVAINRSDSDLTITLQTSLPAGTYCDVISG 49 (81)
T ss_pred CCeEEEEECCCeEEEEEECCCCceEEEEeecCCCcceEEEecC
Confidence 44599999999999999995421 234678888883
No 91
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=91.83 E-value=1.6 Score=42.29 Aligned_cols=124 Identities=10% Similarity=0.075 Sum_probs=71.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCC---C--CCCCCHHHHHHHHHHHHHcCCEEEEEE-cccc
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSL---N--SSYGSEHLLKALLHKMKQHKVRAMADI-VINH 114 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~i---d--~~~Gt~~~~~~Lv~~~h~~Gi~VilD~-V~NH 114 (413)
..+.|.+.|+.++.+++|.+++.=. +. ..+.+.+..|=.+ . ..+=|.+|+++||+-|.++||+||-.+ ++.|
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~Hlt-Dd-~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH 93 (311)
T cd06570 16 PVAVIKRQLDAMASVKLNVFHWHLT-DD-QGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGH 93 (311)
T ss_pred CHHHHHHHHHHHHHhCCeEEEEEEe-cC-CCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccc
Confidence 4788889999999999998887410 00 0111111111111 1 112379999999999999999999776 4566
Q ss_pred CcCCCCCCCCcccccCCCCCCCCCCCe-eccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhc
Q 015125 115 RVGTTQGHGGKYNRYDGIPLSWDEHAV-TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV 185 (413)
Q Consensus 115 ~~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~ 185 (413)
+..-.. .| +.....+. ......++ ..-+.||..+|++.+++.+++..+++-|
T Consensus 94 ~~a~~~----~y-------pel~~~~~~~~~~~~~~--------~~~~~l~~~~p~t~~f~~~l~~E~~~lF 146 (311)
T cd06570 94 ASAIAV----AY-------PELASGPGPYVIERGWG--------VFEPLLDPTNEETYTFLDNLFGEMAELF 146 (311)
T ss_pred hHHHHH----hC-------HHhccCCCccccccccc--------cCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 654110 01 00000000 00000010 1123589999999999999999887444
No 92
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=91.73 E-value=1.6 Score=42.72 Aligned_cols=126 Identities=10% Similarity=0.045 Sum_probs=73.3
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCC------------CCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN------------SSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id------------~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
..+.|.+.||.++..++|.++|.--=. ..+...+..|=.+. ..+=|.+|+++||+-|.++||+||-
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~--~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDD--QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecC--CcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 478888999999999999999854211 01121211111111 1222799999999999999999997
Q ss_pred EE-ccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcC
Q 015125 109 DI-VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 186 (413)
Q Consensus 109 D~-V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~g 186 (413)
.+ ++.|+..-.. .| +..... +.......+.-.....||..+|++.+++.++++..++-|.
T Consensus 94 EiD~PGH~~a~~~----~~-------p~l~~~-------~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~ 154 (329)
T cd06568 94 EIDMPGHTNAALA----AY-------PELNCD-------GKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTP 154 (329)
T ss_pred ecCCcHHHHHHHH----hC-------hhhccC-------CCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCC
Confidence 66 3455543110 01 000000 0000000000011246899999999999999998885443
No 93
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=91.33 E-value=0.35 Score=48.17 Aligned_cols=123 Identities=13% Similarity=0.101 Sum_probs=69.1
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCC--HHHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS--EHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt--~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
-+.+.+.+.-+|++|||.|-|..+.= -.++|.=|. -+.|.++++.|+++||+|||-+.. +..
T Consensus 9 ~e~~~~d~~~m~~~G~n~vri~~~~W------------~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~-~~~--- 72 (374)
T PF02449_consen 9 EEEWEEDLRLMKEAGFNTVRIGEFSW------------SWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPT-AAP--- 72 (374)
T ss_dssp CCHHHHHHHHHHHHT-SEEEE-CCEH------------HHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECT-TTS---
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEech------------hhccCCCCeeecHHHHHHHHHHHhccCeEEEEecc-ccc---
Confidence 46677889999999999999876521 122222222 345889999999999999997751 111
Q ss_pred CCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcC----CCeEeeccc
Q 015125 120 QGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG----FQDFRFDFA 195 (413)
Q Consensus 120 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~g----vDGfR~D~a 195 (413)
| .|+....++.. . .+..+.. ..+......++.+|.+|+++.+.++..++.++ |-|+-+|.=
T Consensus 73 P------~Wl~~~~Pe~~----~--~~~~g~~---~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE 137 (374)
T PF02449_consen 73 P------AWLYDKYPEIL----P--VDADGRR---RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNE 137 (374)
T ss_dssp -------HHHHCCSGCCC-------B-TTTSB---EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCS
T ss_pred c------cchhhhccccc----c--cCCCCCc---CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccc
Confidence 1 11111000100 0 0001100 01222344677899999998888877766555 668888764
No 94
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=91.17 E-value=1.6 Score=40.84 Aligned_cols=81 Identities=9% Similarity=0.152 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCH
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQH 168 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~ 168 (413)
..++..+++.||++|++|++=+- ++... . +. --..++
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~-----------------~---------------------~~----~~~~~~ 81 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP-----------------E---------------------FT----AALNDP 81 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC-----------------c---------------------ch----hhhcCH
Confidence 45789999999999999998542 11000 0 00 012468
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEeecccCCCc-----HHHHHHHHHhhCC
Q 015125 169 FVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-----AKYVKEYIEGARP 212 (413)
Q Consensus 169 ~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~-----~~~~~~~~~~~~~ 212 (413)
+.|+.+++.+..+++++|.||+-+|-=.... ..|++++.++++.
T Consensus 82 ~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~Lr~~l~~ 130 (253)
T cd06545 82 AKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRALYAALKK 130 (253)
T ss_pred HHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHHHHHHhh
Confidence 8899999988888899999999999743322 3467777777653
No 95
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=91.17 E-value=0.73 Score=45.09 Aligned_cols=110 Identities=13% Similarity=0.120 Sum_probs=72.3
Q ss_pred ccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 40 DWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
.+-+.+.+.++.+++.+| ++|||=.=+- .+|. -++.| .+|-. .++|++++|+.|++||+-+.+- +.
T Consensus 21 ~~~~ev~~v~~~~r~~~IP~D~i~lDidy~----~~~~---~Ft~d~~~FPd---p~~mv~~L~~~G~klv~~i~P~-i~ 89 (332)
T cd06601 21 SNRSDLEEVVEGYRDNNIPLDGLHVDVDFQ----DNYR---TFTTNGGGFPN---PKEMFDNLHNKGLKCSTNITPV-IS 89 (332)
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEcCchh----cCCC---ceeecCCCCCC---HHHHHHHHHHCCCeEEEEecCc-ee
Confidence 367778888888887665 6777654211 1332 24455 36644 4789999999999999877433 11
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccC
Q 015125 117 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 196 (413)
Q Consensus 117 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~ 196 (413)
. + ..|.. -... .|+.||++|++..+..+.+. +.|||||=+|+..
T Consensus 90 ~-------------g--~~~~~------------------~~~~--pDftnp~ar~wW~~~~~~l~-~~Gv~~~W~DmnE 133 (332)
T cd06601 90 Y-------------G--GGLGS------------------PGLY--PDLGRPDVREWWGNQYKYLF-DIGLEFVWQDMTT 133 (332)
T ss_pred c-------------C--ccCCC------------------Ccee--eCCCCHHHHHHHHHHHHHHH-hCCCceeecCCCC
Confidence 0 0 01100 0112 36789999999888888886 7899999999764
No 96
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=90.85 E-value=0.6 Score=46.24 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc---------HHHHHHHHHhhC
Q 015125 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS---------AKYVKEYIEGAR 211 (413)
Q Consensus 166 ~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~---------~~~~~~~~~~~~ 211 (413)
.+++.|+.+++.+..+++++|.||+-+|-=.... ..|++++.++++
T Consensus 92 ~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~ 146 (358)
T cd02875 92 SNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFK 146 (358)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHh
Confidence 4788899999988888899999999999643221 246777777764
No 97
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=90.65 E-value=0.55 Score=50.40 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=33.5
Q ss_pred cHHHHHhhhhhHH--HcCCCEEE-cCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHH
Q 015125 41 WWRNLERKVPDIS--KSGFTSVW-LPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALL 96 (413)
Q Consensus 41 ~~~gi~~~L~yLk--~lGv~~I~-L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv 96 (413)
++..+++.+.... -.|++=|. +.|..+. ....|+|.+-+.++|-|=+.+++.++.
T Consensus 166 dl~~l~d~~a~~G~~~~qlnPlha~~p~~p~-~~SPYsp~Sr~alNPlyI~~e~l~e~~ 223 (695)
T PRK11052 166 DLKQMLEDVAKRGGDFIGLNPIHALYPANPE-SASPYSPSSRRWLNVIYIDVNAVEDFQ 223 (695)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcCCCCCCC-CCCCcccccccccChHHcCHHHHhhhh
Confidence 4555555555322 23355555 3343222 467799999999998888877766553
No 98
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=90.58 E-value=0.67 Score=50.41 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCC-CCCcCCCCCHHH
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFH-GVPNIDHTQHFV 170 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~~~~v 170 (413)
.++|++++|++|||+|+=+-+. ...+++. |.--. ....++...+ +..+..+.|. ...-+|+.||++
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~-i~~d~~~----~~e~~------~~Gy~~k~~~--g~~~~~~~w~~~~a~~DFtnp~~ 389 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPY-IKQDSPL----FKEAI------EKGYFVKDPD--GEIYQADFWPGNSAFPDFTNPDA 389 (772)
T ss_pred HHHHHHHHHhcCceEEEEeccc-cccCCch----HHHHH------HCCeEEECCC--CCEeeecccCCcccccCCCCHHH
Confidence 4499999999999999988665 2222221 10000 0001111111 1111122222 345578999999
Q ss_pred HHHHHH-HHHHHHhhcCCCeEeecccCCCc
Q 015125 171 RKDIIA-WLRWLRNTVGFQDFRFDFARGYS 199 (413)
Q Consensus 171 r~~l~~-~~~~w~~~~gvDGfR~D~a~~i~ 199 (413)
|+...+ ..+.++ ++|||||=.|+....+
T Consensus 390 r~Ww~~~~~~~l~-d~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 390 REWWASDKKKNLL-DLGVDGFWNDMNEPEP 418 (772)
T ss_pred HHHHHHHHHhHHH-hcCccEEEccCCCCcc
Confidence 999995 556676 9999999999865443
No 99
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.38 E-value=0.7 Score=47.10 Aligned_cols=77 Identities=13% Similarity=0.071 Sum_probs=50.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcC-------CC--------CCCCCCCCCCcccCCCCCCCCC-------------CHHHH
Q 015125 41 WWRNLERKVPDISKSGFTSVWLP-------PA--------THSFAPEGYLPQNLYSLNSSYG-------------SEHLL 92 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~-------Pi--------~~~~~~~gY~~~d~~~id~~~G-------------t~~~~ 92 (413)
+.+.|.+.|+.++..++|.++|. || .+..++.++...+...+-|.+| |.+|+
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~di 99 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRADY 99 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHHH
Confidence 37888888888898999988874 11 1111233333333222222222 78999
Q ss_pred HHHHHHHHHcCCEEEEEE-ccccCcC
Q 015125 93 KALLHKMKQHKVRAMADI-VINHRVG 117 (413)
Q Consensus 93 ~~Lv~~~h~~Gi~VilD~-V~NH~~~ 117 (413)
++||+-|+++||+||-.+ ++.|+..
T Consensus 100 ~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 100 IEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred HHHHHHHHHcCCEEEEccCCchhHHH
Confidence 999999999999999766 4667664
No 100
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=89.77 E-value=0.77 Score=35.79 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=31.9
Q ss_pred EEecCCEEEEEECC----EEEEEEcCCCC-C--------CCCCCcEEeeeCCceEE
Q 015125 368 LEAQSNLYSAIIGD----KVCMKIGDGSW-C--------PAGKEWTLATSGHKYAV 410 (413)
Q Consensus 368 ~~~~~~~~~~~r~~----~~lv~lnn~~~-~--------~~~~~~~~~~s~~~~~~ 410 (413)
-..+++++||.|.+ .++||+|++.. . |.++.|+++|++....+
T Consensus 5 ~d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~ 60 (95)
T PF02806_consen 5 DDNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEY 60 (95)
T ss_dssp EEESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEEE
T ss_pred ccCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccEE
Confidence 34567899999932 58999998664 1 45789999998866554
No 101
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=89.20 E-value=1.2 Score=49.44 Aligned_cols=133 Identities=13% Similarity=0.145 Sum_probs=74.3
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+-+.+.+-++.+++.|| ++|||--=+ -.||.. |..|+ +|- +.++|++++|++|+++|.=+-+ ++..
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwlDidY----m~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~iidP-gI~~ 267 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWMDIDY----MDGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIWMLDP-GIKA 267 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEehhh----hcCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEEEEcC-CCcc
Confidence 45677777777777665 566664211 123332 45553 554 4689999999999999764432 1211
Q ss_pred CCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCC-CCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG-VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 118 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
+..|..+... -....+....++ .+..+..|.+ ..=.|+.||++|++..+.++.++ +.|||||=+|+-
T Consensus 268 -----d~gY~~y~eg---~~~~~fvk~~~G--~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~-d~GVDG~W~Dmn 335 (978)
T PLN02763 268 -----EEGYFVYDSG---CENDVWIQTADG--KPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFV-SNGVDGIWNDMN 335 (978)
T ss_pred -----CCCCHHHHhH---hhcCeeEECCCC--CeeEeeecCCCccccCCCCHHHHHHHHHHHHHHh-cCCCcEEEccCC
Confidence 1123222110 000000111111 1111111211 12257899999999999999888 799999999984
No 102
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=89.00 E-value=0.68 Score=53.05 Aligned_cols=71 Identities=18% Similarity=0.092 Sum_probs=57.6
Q ss_pred cCCceeEEEeeecCCCCC---ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-CC----CCCCcccCCCCCCCCCCHHHH
Q 015125 22 RNGREILFQGFNWESCKH---DWWRNLERKVPDISKSGFTSVWLPPATHSF-AP----EGYLPQNLYSLNSSYGSEHLL 92 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~---g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~----~gY~~~d~~~id~~~Gt~~~~ 92 (413)
+...++++|+|-=.+..+ |||..+.+-++.+++.|.+.|+|+|+++.. .. ..|+|.+-+.++|-|=+.+.+
T Consensus 722 ~r~~Gv~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNplyI~~~~l 800 (1221)
T PRK14510 722 GRACGILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNPLLISLDLL 800 (1221)
T ss_pred CcceEEEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccChhhcCHhhc
Confidence 345689999997554333 899999999999999999999999999854 33 789999999999777665443
No 103
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=88.80 E-value=2.1 Score=41.55 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCC
Q 015125 87 GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHT 166 (413)
Q Consensus 87 Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 166 (413)
.+.+++++-|+.||++|+||++-+ +.. ... ....
T Consensus 57 ~~~~~~~~~i~~~q~~G~KVllSi-----GG~------------------~~~-----------------------~~~~ 90 (312)
T cd02871 57 YSPAEFKADIKALQAKGKKVLISI-----GGA------------------NGH-----------------------VDLN 90 (312)
T ss_pred CChHHHHHHHHHHHHCCCEEEEEE-----eCC------------------CCc-----------------------cccC
Confidence 356789999999999999999875 110 000 0123
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 167 ~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
++.-|+.+++.+..+++++|+||+=+|-=
T Consensus 91 ~~~~~~~fa~sl~~~~~~~g~DGiDiD~E 119 (312)
T cd02871 91 HTAQEDNFVDSIVAIIKEYGFDGLDIDLE 119 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 56778889999988899999999999964
No 104
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=88.44 E-value=3.5 Score=40.75 Aligned_cols=126 Identities=7% Similarity=-0.053 Sum_probs=70.8
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCC-----------CCCC----CCCCCCCc----ccCCCCCC--CCCCHHHHHHHHHHHH
Q 015125 42 WRNLERKVPDISKSGFTSVWLPP-----------ATHS----FAPEGYLP----QNLYSLNS--SYGSEHLLKALLHKMK 100 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~P-----------i~~~----~~~~gY~~----~d~~~id~--~~Gt~~~~~~Lv~~~h 100 (413)
-+.|.+.++.++.+++|.++|.- -++. .+..+... .......+ .+=|.+|++++|+-|+
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~ 96 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYAA 96 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHHH
Confidence 67888889999999999999842 1110 11111111 00011111 1226899999999999
Q ss_pred HcCCEEEEEE-ccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHH
Q 015125 101 QHKVRAMADI-VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLR 179 (413)
Q Consensus 101 ~~Gi~VilD~-V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~ 179 (413)
++||+||-.+ ++.|+..-... | +.....+ ... .+. .........||..+|++.+++.++++
T Consensus 97 ~rgI~VIPEID~PGH~~a~l~~----~-------pel~~~~----~~~--~~~-~~~~~~~~~L~~~~~~t~~f~~~ll~ 158 (357)
T cd06563 97 ERGITVIPEIDMPGHALAALAA----Y-------PELGCTG----GPG--SVV-SVQGVVSNVLCPGKPETYTFLEDVLD 158 (357)
T ss_pred HcCCEEEEecCCchhHHHHHHh----C-------ccccCCC----CCC--ccc-cccCcCCCccCCCChhHHHHHHHHHH
Confidence 9999999776 35565431100 0 0000000 000 000 00011123588899999999999999
Q ss_pred HHHhhc
Q 015125 180 WLRNTV 185 (413)
Q Consensus 180 ~w~~~~ 185 (413)
..++-|
T Consensus 159 E~~~lF 164 (357)
T cd06563 159 EVAELF 164 (357)
T ss_pred HHHHhC
Confidence 887544
No 105
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=88.10 E-value=0.69 Score=44.31 Aligned_cols=57 Identities=12% Similarity=0.217 Sum_probs=34.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
|-+.-..-+++||+||+|+|-+ |+|||..--.+-+ +.+.+.||.||+|+-.-+.+.+
T Consensus 51 d~~~C~rDi~~l~~LgiNtIRV-----------------Y~vdp~~nHd~CM----~~~~~aGIYvi~Dl~~p~~sI~ 107 (314)
T PF03198_consen 51 DPEACKRDIPLLKELGINTIRV-----------------YSVDPSKNHDECM----SAFADAGIYVILDLNTPNGSIN 107 (314)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-----------------S---TTS--HHHH----HHHHHTT-EEEEES-BTTBS--
T ss_pred CHHHHHHhHHHHHHcCCCEEEE-----------------EEeCCCCCHHHHH----HHHHhCCCEEEEecCCCCcccc
Confidence 4455566778999999999984 7888776444433 4567789999999976655543
No 106
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=87.92 E-value=1 Score=48.44 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 90 HLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 90 ~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
.+++++.+.|+++||+++-|+.+- ++.++
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg-Va~dS 302 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG-VDKAS 302 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece-eCCCc
Confidence 568889999999999999999887 55544
No 107
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=87.63 E-value=1.2 Score=43.80 Aligned_cols=154 Identities=9% Similarity=0.067 Sum_probs=87.0
Q ss_pred ccccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCC-CCCCHHH
Q 015125 15 TDLGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHL 91 (413)
Q Consensus 15 ~~~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~-~~Gt~~~ 91 (413)
|.+||.++=| |+..-..-.+-+.+.+.++.+++.|| ++|||-.=+- .+|. + ++.|+ +|- +
T Consensus 3 ~~lpP~walG-------~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~--~-f~~d~~~FP---d 65 (339)
T cd06603 3 PPLPPLFSLG-------YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKR--Y-FTWDKKKFP---D 65 (339)
T ss_pred CCCCchHHHH-------HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCC--c-eEeCcccCC---C
Confidence 3456666554 33332333478889999999988775 6676653211 1222 2 45554 554 5
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCC-CCCcCCCCCHHH
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFH-GVPNIDHTQHFV 170 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~~~~v 170 (413)
.++||+++|++|+||++-+.+-- ..+.. ...|..... ..+. +.. .++ .......|. ...-+|+.||++
T Consensus 66 p~~mi~~L~~~G~k~~~~~~P~v-~~~~~--~~~y~e~~~--~g~~---vk~-~~g--~~~~~~~w~g~~~~~Dftnp~a 134 (339)
T cd06603 66 PEKMQEKLASKGRKLVTIVDPHI-KRDDG--YYVYKEAKD--KGYL---VKN-SDG--GDFEGWCWPGSSSWPDFLNPEV 134 (339)
T ss_pred HHHHHHHHHHCCCEEEEEecCce-ecCCC--CHHHHHHHH--CCeE---EEC-CCC--CEEEEEECCCCcCCccCCChhH
Confidence 68899999999999999876542 22110 011110000 0000 000 000 000011111 123478999999
Q ss_pred HHHHHHHHHHHHh--hcCCCeEeecccC
Q 015125 171 RKDIIAWLRWLRN--TVGFQDFRFDFAR 196 (413)
Q Consensus 171 r~~l~~~~~~w~~--~~gvDGfR~D~a~ 196 (413)
++...+.++.... ..|+||+=+|+..
T Consensus 135 ~~ww~~~~~~~~~~~~~g~~g~w~D~~E 162 (339)
T cd06603 135 RDWWASLFSYDKYKGSTENLYIWNDMNE 162 (339)
T ss_pred HHHHHHHHHHHhhcccCCCceEEeccCC
Confidence 9999999998874 4689999888753
No 108
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=87.48 E-value=0.94 Score=45.43 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=43.7
Q ss_pred CCCCCcCCC-----CCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHhhC
Q 015125 157 FHGVPNIDH-----TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 157 ~~~~~dln~-----~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~~~ 211 (413)
|.+...|+| ++|.++++|.++.+... .-++|||+|-++..|..+-+.+++++|
T Consensus 360 WGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A--~iF~G~RiDNCHSTPlhVaeylLd~AR 417 (423)
T PF14701_consen 360 WGDCVKLRYGSKPEDSPFLWKHMKEYTELMA--KIFHGFRIDNCHSTPLHVAEYLLDAAR 417 (423)
T ss_pred cCceeeecCCCCCCCCHHHHHHHHHHHHHHH--HhcCeeeeecCCCCcHHHHHHHHHHHH
Confidence 345556666 47999999999999884 668999999999999998888887765
No 109
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=87.29 E-value=3.9 Score=39.89 Aligned_cols=122 Identities=16% Similarity=0.108 Sum_probs=72.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcC-------CCCCCC--CCC-CCC------cccCCCC--CCCCCCHHHHHHHHHHHHHc
Q 015125 41 WWRNLERKVPDISKSGFTSVWLP-------PATHSF--APE-GYL------PQNLYSL--NSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~-------Pi~~~~--~~~-gY~------~~d~~~i--d~~~Gt~~~~~~Lv~~~h~~ 102 (413)
..+.|.+.|+.++.+++|.++|- ++-..+ ... .|. +...... ...+=|.+|++++|+-|.++
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~r 94 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDR 94 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHc
Confidence 37888899999999999999982 110000 000 000 0000111 12222799999999999999
Q ss_pred CCEEEEEE-ccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHH
Q 015125 103 KVRAMADI-VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWL 181 (413)
Q Consensus 103 Gi~VilD~-V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w 181 (413)
||+||-.+ ++.|+..-.. . | +.....+ . ........||..+|++.+++.+++...
T Consensus 95 gI~vIPEID~PGH~~a~~~---~-~-------pel~~~~----~---------~~~~~~~~l~~~~~~t~~f~~~l~~E~ 150 (326)
T cd06564 95 GVNIIPEIDSPGHSLAFTK---A-M-------PELGLKN----P---------FSKYDKDTLDISNPEAVKFVKALFDEY 150 (326)
T ss_pred CCeEeccCCCcHHHHHHHH---h-h-------HHhcCCC----c---------ccCCCcccccCCCHHHHHHHHHHHHHH
Confidence 99999666 3556544110 0 0 0000000 0 001223357889999999999999999
Q ss_pred HhhcC
Q 015125 182 RNTVG 186 (413)
Q Consensus 182 ~~~~g 186 (413)
++-|.
T Consensus 151 ~~~f~ 155 (326)
T cd06564 151 LDGFN 155 (326)
T ss_pred HHhcC
Confidence 86665
No 110
>PLN02950 4-alpha-glucanotransferase
Probab=86.94 E-value=1.5 Score=48.70 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 90 HLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 90 ~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
.+++++.+.|+++||+++.|+.+- ++.++
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig-V~~dS 489 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG-VDRNS 489 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece-eCCCc
Confidence 468899999999999999999886 44443
No 111
>TIGR03356 BGL beta-galactosidase.
Probab=86.64 E-value=4.1 Score=41.40 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=45.0
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
+.+.-..+-++-||+||++++=++=-...--+.|- -.+ .-...+=+.++|++|+++||++|+++.
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~-----~~~--n~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGT-----GPV--NPKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCC-----CCc--CHHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 36888889999999999999887532221111110 011 111246688999999999999999993
No 112
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=86.48 E-value=8 Score=38.66 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=71.2
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGG 124 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~ 124 (413)
.+-++-+|+.|...|-|+-=+.-. .-+.=..++|..++... ..+-+++|+++|+++||++-+= |..
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~Y----~S~-------- 150 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGLY----HSL-------- 150 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEEE----cCH--------
Confidence 445667899999999877654321 11111123555555444 5688999999999999999881 221
Q ss_pred cccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHH---HHHHHHHHhhcCCCeEeecccCCCc
Q 015125 125 KYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDI---IAWLRWLRNTVGFQDFRFDFARGYS 199 (413)
Q Consensus 125 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l---~~~~~~w~~~~gvDGfR~D~a~~i~ 199 (413)
.+|+... +.... .........+...+++ ..-++.++..||-|.+=+|.+-.-+
T Consensus 151 ---------~DW~~p~---y~~~~----------~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~~ 206 (384)
T smart00812 151 ---------FDWFNPL---YAGPT----------SSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEAP 206 (384)
T ss_pred ---------HHhCCCc---ccccc----------ccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCc
Confidence 1222110 00000 0000011234556777 7888999999999999999874433
No 113
>PRK15447 putative protease; Provisional
Probab=86.21 E-value=1.5 Score=42.35 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=41.4
Q ss_pred eecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 32 FNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 32 f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
|+|. =..++.-...|++.|+|+||+.-. . +..-..| +.+++++.|+.||++|.+|++
T Consensus 10 ~~~p------~~~~~~~~~~~~~~gaDaVY~g~~--~-----------~~~R~~f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 10 YYWP------KETVRDFYQRAADSPVDIVYLGET--V-----------CSKRREL-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred cCCC------CCCHHHHHHHHHcCCCCEEEECCc--c-----------CCCccCC-CHHHHHHHHHHHHHcCCEEEE
Confidence 6776 334555666788999999999731 1 1111123 679999999999999999998
No 114
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=85.16 E-value=6 Score=38.96 Aligned_cols=146 Identities=14% Similarity=0.088 Sum_probs=74.1
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCC
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG 123 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~ 123 (413)
..+-+.-+|++|...|-|+--+... .-+-=..++|..++ .-+..+-+++|+++|+++||++.+ +-|..
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~-~~~krDiv~El~~A~rk~Glk~G~---Y~S~~------- 161 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVN-SGPKRDIVGELADACRKYGLKFGL---YYSPW------- 161 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGG-GGGTS-HHHHHHHHHHHTT-EEEE---EEESS-------
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccC-CCCCCCHHHHHHHHHHHcCCeEEE---Eecch-------
Confidence 3455667899999999987655431 11111223333333 223468899999999999999998 22211
Q ss_pred CcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCC-CHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc--H
Q 015125 124 GKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHT-QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS--A 200 (413)
Q Consensus 124 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~-~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~--~ 200 (413)
+|+........ ... . ...++..-. ...+.+++..-++.++.+|.+|.+=+|....-+ .
T Consensus 162 -----------dw~~~~~~~~~--~~~-~-----~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~~~~ 222 (346)
T PF01120_consen 162 -----------DWHHPDYPPDE--EGD-E-----NGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPDPDED 222 (346)
T ss_dssp -----------SCCCTTTTSSC--HCH-H-----CC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSCCCTH
T ss_pred -----------HhcCcccCCCc--cCC-c-----ccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCccccc
Confidence 12211000000 000 0 000000000 123455778889999999999999999886522 2
Q ss_pred HHHHH---HHHhhCCCeEEEccc
Q 015125 201 KYVKE---YIEGARPIFSVGEYW 220 (413)
Q Consensus 201 ~~~~~---~~~~~~~~~~vgE~~ 220 (413)
....+ ++.+..|..+|..-+
T Consensus 223 ~~~~~~~~~i~~~qp~~ii~~r~ 245 (346)
T PF01120_consen 223 WDSAELYNWIRKLQPDVIINNRW 245 (346)
T ss_dssp HHHHHHHHHHHHHSTTSEEECCC
T ss_pred cCHHHHHHHHHHhCCeEEEeccc
Confidence 22233 344445644444434
No 115
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=83.84 E-value=3.5 Score=39.75 Aligned_cols=112 Identities=7% Similarity=-0.039 Sum_probs=69.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCC--CC--CCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE-ccccC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPP--AT--HSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI-VINHR 115 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~P--i~--~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~-V~NH~ 115 (413)
..+.|.+.++.|+.+|+|.++|-= -| ++...-++ +...=|.+|++++++-|.++||.||-.+ ++.|+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~--------~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~ 86 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGR--------MRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHL 86 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCccccc--------CCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHH
Confidence 467889999999999999999832 11 11111111 0122269999999999999999999554 25565
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcC
Q 015125 116 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 186 (413)
Q Consensus 116 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~g 186 (413)
..--.+ ..|... +... ..-..||..+|++.+++.+.++..++-|.
T Consensus 87 ~~~l~~--~~~~~l------------~~~~------------~~~~~l~~~~~~t~~fi~~li~ev~~~f~ 131 (301)
T cd06565 87 EFILKH--PEFRHL------------REVD------------DPPQTLCPGEPKTYDFIEEMIRQVLELHP 131 (301)
T ss_pred HHHHhC--cccccc------------cccC------------CCCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 441100 011000 0000 00124788899999999999998885544
No 116
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=83.81 E-value=16 Score=34.54 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=78.7
Q ss_pred ecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 33 NWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 33 ~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
+|. |+-+-.++..|.+-+++.|-+=|= +...+..=.++++++ .+.+.|.++|.=+-+
T Consensus 26 ~w~------~ql~d~~~~~i~~~~f~llVVDps-------------~~g~~~~~~~~eelr----~~~~gg~~pIAYlsI 82 (300)
T COG2342 26 PWY------YQLQDAYINEILNSPFDLLVVDPS-------------YCGPFNTPWTIEELR----TKADGGVKPIAYLSI 82 (300)
T ss_pred chh------hhcccchHHHHhcCCCcEEEEecc-------------ccCCCCCcCcHHHHH----HHhcCCeeEEEEEec
Confidence 677 887888888999999998887772 122233345678888 556677777766655
Q ss_pred ccCcCCCC-CCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEe
Q 015125 113 NHRVGTTQ-GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFR 191 (413)
Q Consensus 113 NH~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR 191 (413)
.....=.. |.++ |.. ..++|-.. ....|.+--...|..|+-++-+...++.++ +.|+||.-
T Consensus 83 g~ae~yR~Ywd~~---w~~-~~p~wLg~-------------edP~W~Gny~VkYW~~eWkdii~~~l~rL~-d~GfdGvy 144 (300)
T COG2342 83 GEAESYRFYWDKY---WLT-GRPDWLGE-------------EDPEWPGNYAVKYWEPEWKDIIRSYLDRLI-DQGFDGVY 144 (300)
T ss_pred hhhhhhhhHhhhh---hhc-CCcccccC-------------CCCCCCCCceeeccCHHHHHHHHHHHHHHH-HccCceEE
Confidence 53333110 0000 000 11222211 011234444577889999999999999998 99999999
Q ss_pred ecccCCC
Q 015125 192 FDFARGY 198 (413)
Q Consensus 192 ~D~a~~i 198 (413)
+|.+...
T Consensus 145 LD~VD~y 151 (300)
T COG2342 145 LDVVDAY 151 (300)
T ss_pred EeeechH
Confidence 9988655
No 117
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=83.37 E-value=4.1 Score=39.49 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=32.5
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCC
Q 015125 157 FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARG 197 (413)
Q Consensus 157 ~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~ 197 (413)
|.+-.-+|+.+|+.|+.+.+.++..+ +.|+|||=+|.+..
T Consensus 132 W~g~~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDs 171 (315)
T TIGR01370 132 WPGNYDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDA 171 (315)
T ss_pred CCCceeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchh
Confidence 33334588999999999999988776 99999999997654
No 118
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=83.12 E-value=14 Score=35.09 Aligned_cols=105 Identities=12% Similarity=0.036 Sum_probs=62.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCC-CCC-CcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAP-EGY-LPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~-~gY-~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
+.+....-+|+-+++|+..|.+ ...-+ ++. ...|+....+ ..++++||+=|+++|++|+|=. ||....
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~----~~dl~elv~Ya~~KgVgi~lw~--~~~~~~ 99 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIP----DFDLPELVDYAKEKGVGIWLWY--HSETGG 99 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-T----T--HHHHHHHHHHTT-EEEEEE--ECCHTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEe----ccccccccccccccccccCC----ccCHHHHHHHHHHcCCCEEEEE--eCCcch
Confidence 8999999999999999999998 11111 111 2344444443 3789999999999999998733 322110
Q ss_pred CCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC
Q 015125 119 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 198 (413)
Q Consensus 119 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i 198 (413)
+ ...+.+.+.+.++.+ ++.||.|+-+|.+..=
T Consensus 100 ------------------~-----------------------------~~~~~~~~~~~f~~~-~~~Gv~GvKidF~~~d 131 (273)
T PF10566_consen 100 ------------------N-----------------------------VANLEKQLDEAFKLY-AKWGVKGVKIDFMDRD 131 (273)
T ss_dssp ------------------B-----------------------------HHHHHCCHHHHHHHH-HHCTEEEEEEE--SST
T ss_pred ------------------h-----------------------------hHhHHHHHHHHHHHH-HHcCCCEEeeCcCCCC
Confidence 0 011333454555555 5999999999999876
Q ss_pred cHHHH
Q 015125 199 SAKYV 203 (413)
Q Consensus 199 ~~~~~ 203 (413)
....+
T Consensus 132 ~Q~~v 136 (273)
T PF10566_consen 132 DQEMV 136 (273)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 65433
No 119
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=82.94 E-value=8.4 Score=37.15 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc------HHHHHHHHHhhC
Q 015125 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS------AKYVKEYIEGAR 211 (413)
Q Consensus 166 ~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~------~~~~~~~~~~~~ 211 (413)
.++..|+.+++.+..+++++|.||+-+|--..-+ ..|++++.++++
T Consensus 83 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~ 134 (313)
T cd02874 83 SNPEARQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLH 134 (313)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhh
Confidence 3688899999998888889999999999754322 236777777765
No 120
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=82.68 E-value=2.2 Score=34.83 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=33.1
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
-+.+.+-++.+.++|+.++|+.|= +.-+++++.|+++||+|+-
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPG------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TT------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcc------------------------hHHHHHHHHHHHcCCEEEe
Confidence 678899999999999999999982 4557788899999999973
No 121
>PRK15452 putative protease; Provisional
Probab=82.54 E-value=10 Score=38.61 Aligned_cols=48 Identities=6% Similarity=-0.023 Sum_probs=32.2
Q ss_pred hhhHHHcCCCEEEcCCC-CCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 49 VPDISKSGFTSVWLPPA-THSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 49 L~yLk~lGv~~I~L~Pi-~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
|...-+.|.|+|++..- |..... .. .| +.+++++.|+.||++|++|.+
T Consensus 16 l~aAi~~GADaVY~G~~~~~~R~~----~~-------~f-~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 16 MRYAFAYGADAVYAGQPRYSLRVR----NN-------EF-NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred HHHHHHCCCCEEEECCCccchhhh----cc-------CC-CHHHHHHHHHHHHHcCCEEEE
Confidence 33344679999999542 211100 01 22 468899999999999999987
No 122
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=82.31 E-value=2 Score=32.45 Aligned_cols=42 Identities=10% Similarity=0.032 Sum_probs=23.7
Q ss_pred EecCCEEEEEE--C-CEEEEEEcCCCCC------------CCCCCcEEeeeCCceEE
Q 015125 369 EAQSNLYSAII--G-DKVCMKIGDGSWC------------PAGKEWTLATSGHKYAV 410 (413)
Q Consensus 369 ~~~~~~~~~~r--~-~~~lv~lnn~~~~------------~~~~~~~~~~s~~~~~~ 410 (413)
-..+++++|.| + +.++|++|+++.. +.....++++||....+
T Consensus 6 ~P~~gvYvYfR~~~~~tVmVilN~n~~~~~ldl~ry~E~l~~~~~~~diltg~~i~l 62 (78)
T PF10438_consen 6 APQDGVYVYFRYYDGKTVMVILNKNDKEQTLDLKRYAEVLGGFTSAKDILTGKTIDL 62 (78)
T ss_dssp --BTTEEEEEEEESSEEEEEEEE-SSS-EEEEGGGGHHHHTT--EEEETTT--EEE-
T ss_pred CccCCEEEEEEEcCCCEEEEEEcCCCCCeEEcHHHHHHhhCCCcceEECCCCCEEec
Confidence 34678999998 4 4577777775532 23467788888877653
No 123
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=81.88 E-value=4 Score=37.27 Aligned_cols=62 Identities=8% Similarity=0.075 Sum_probs=43.2
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCC--C----CCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFA--P----EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~--~----~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
-+.+.+-.+.|+++|+..|.|+|.++... | ..|...+. .-=+.++++++.+.+.++|++|++
T Consensus 144 ~e~i~~ia~~l~~l~~~~~~llpyh~~g~~Ky~~lg~~y~~~~~-----~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 144 RENMQQALDVLIPLGIKQIHLLPFHQYGEPKYRLLGKTWSMKEV-----PAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCccchhHHHHcCCcCccCCC-----CCcCHHHHHHHHHHHHHcCCeEEe
Confidence 55666667788888999999999776431 1 12222221 112688999999999999999975
No 124
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=81.56 E-value=1.2 Score=43.42 Aligned_cols=56 Identities=9% Similarity=0.080 Sum_probs=34.0
Q ss_pred HhhhhhHHHcCCCEEEcCCCCC-CCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 46 ERKVPDISKSGFTSVWLPPATH-SFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~-~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+.|..+|++|+|+|.+-=+.. +...- ...|| ....+|.++++.|+++||.|||-.
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~--g~~df-------~g~~dl~~f~~~a~~~gl~vilrp 83 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEE--GQFDF-------TGNRDLDRFLDLAQENGLYVILRP 83 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBT--TB----------SGGG-HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCC--Ccccc-------cchhhHHHHHHHHHHcCcEEEecc
Confidence 3577788999999998742221 11111 11222 234789999999999999999875
No 125
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=81.44 E-value=4.2 Score=37.60 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=46.6
Q ss_pred ccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 015125 21 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (413)
Q Consensus 21 ~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h 100 (413)
+.+| +++.+.+... ..+.+-+.+.|+||+++|+++-= +..+ +.++..++|+.++
T Consensus 57 v~~G-Gtl~E~~~~q-------~~~~~Yl~~~k~lGf~~IEiS~G-------------~~~i-----~~~~~~rlI~~~~ 110 (237)
T TIGR03849 57 VYPG-GTLFEIAHSK-------GKFDEYLNECDELGFEAVEISDG-------------SMEI-----SLEERCNLIERAK 110 (237)
T ss_pred EeCC-ccHHHHHHHh-------hhHHHHHHHHHHcCCCEEEEcCC-------------ccCC-----CHHHHHHHHHHHH
Confidence 3445 5555555533 34555667999999999998751 2333 4889999999999
Q ss_pred HcCCEEEEEE
Q 015125 101 QHKVRAMADI 110 (413)
Q Consensus 101 ~~Gi~VilD~ 110 (413)
++|++|+-.+
T Consensus 111 ~~g~~v~~Ev 120 (237)
T TIGR03849 111 DNGFMVLSEV 120 (237)
T ss_pred hCCCeEeccc
Confidence 9999999665
No 126
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=81.29 E-value=1.5 Score=45.41 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCCCeEeecccCCCc----------------------HHHHHHHHHhhC-CCeEEEcccCC
Q 015125 174 IIAWLRWLRNTVGFQDFRFDFARGYS----------------------AKYVKEYIEGAR-PIFSVGEYWDS 222 (413)
Q Consensus 174 l~~~~~~w~~~~gvDGfR~D~a~~i~----------------------~~~~~~~~~~~~-~~~~vgE~~~~ 222 (413)
.++-++.- ...+|++|+|.+..+- .++++.+..+.. +..+|||..+.
T Consensus 268 w~~rl~~~--~~~~d~lRIDH~~Gf~r~W~IP~~~~~a~~G~~~~~p~~~ll~~l~~e~~r~~~vigEDLG~ 337 (496)
T PF02446_consen 268 WIDRLRAN--MRLFDALRIDHFRGFFRYWWIPAGGETAIDGAWVRYPGEDLLAILALESGRDCLVIGEDLGT 337 (496)
T ss_dssp HHHHHHHH--HCC-SEEEEETGGGGTEEEEEETT-SSSTT-EEEE--HHHHHHHHHHHHS-S-EEEE--TSS
T ss_pred HHHHHHHH--HHhCCchHHHHHHHHHheeEecCCCCCCCCceeecchHHHHHHHHHHHcCCCCcEEEeecCC
Confidence 33344444 3567889999876541 456777777776 67789996643
No 127
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=80.30 E-value=4.9 Score=38.17 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=33.2
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHH---HHHHHHHHHcCCEEEEEE
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLL---KALLHKMKQHKVRAMADI 110 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~---~~Lv~~~h~~Gi~VilD~ 110 (413)
.+.+.-||.-|||.|=|==.... .| .+=++-.|...|+ .++.+.|++.||||++|+
T Consensus 66 qD~~~iLK~~GvNyvRlRvwndP--------~d-sngn~yggGnnD~~k~ieiakRAk~~GmKVl~dF 124 (403)
T COG3867 66 QDALQILKNHGVNYVRLRVWNDP--------YD-SNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDF 124 (403)
T ss_pred HHHHHHHHHcCcCeEEEEEecCC--------cc-CCCCccCCCcchHHHHHHHHHHHHhcCcEEEeec
Confidence 34677899999998755221111 11 0111223334444 456667778999999998
No 128
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=80.13 E-value=25 Score=33.19 Aligned_cols=106 Identities=9% Similarity=-0.007 Sum_probs=74.4
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR 105 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~ 105 (413)
..-+.+|.|. -...++.++..++.||+.|-+.= ..-..+..+++|+.++++|++
T Consensus 71 ~~~~~~~~~~------~~~~~~~l~~a~~~gv~~iri~~--------------------~~~~~~~~~~~i~~ak~~G~~ 124 (266)
T cd07944 71 NTKIAVMVDY------GNDDIDLLEPASGSVVDMIRVAF--------------------HKHEFDEALPLIKAIKEKGYE 124 (266)
T ss_pred CCEEEEEECC------CCCCHHHHHHHhcCCcCEEEEec--------------------ccccHHHHHHHHHHHHHCCCe
Confidence 3566777766 21234456666778888877631 111588999999999999999
Q ss_pred EEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhc
Q 015125 106 AMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV 185 (413)
Q Consensus 106 VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~ 185 (413)
|.+-+.--... + .+++.+.++... +.
T Consensus 125 v~~~~~~a~~~--------------------------------------------------~---~~~~~~~~~~~~-~~ 150 (266)
T cd07944 125 VFFNLMAISGY--------------------------------------------------S---DEELLELLELVN-EI 150 (266)
T ss_pred EEEEEEeecCC--------------------------------------------------C---HHHHHHHHHHHH-hC
Confidence 88766432100 0 356788888876 88
Q ss_pred CCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 186 GFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 186 gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
|+|.+++ |++..+.|.-..+++..++
T Consensus 151 g~~~i~l~DT~G~~~P~~v~~lv~~l~ 177 (266)
T cd07944 151 KPDVFYIVDSFGSMYPEDIKRIISLLR 177 (266)
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999987 8888888888888877765
No 129
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.80 E-value=22 Score=33.48 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=37.3
Q ss_pred HHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 44 gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
.+.+.++.++++|+++|+|.+.... ....+.+ + +.++++++.+.+.++||+|..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~---~~~~~~~-------~-~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESD---ERLARLD-------W-SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcc---ccccccc-------C-CHHHHHHHHHHHHHcCCCceE
Confidence 3566889999999999999643100 0011111 1 467799999999999999873
No 130
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=79.62 E-value=2.6 Score=41.90 Aligned_cols=68 Identities=13% Similarity=0.273 Sum_probs=48.7
Q ss_pred CCccHHHHHhhhhhHHHcCCCEEEcCC---CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 38 KHDWWRNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 38 ~~g~~~gi~~~L~yLk~lGv~~I~L~P---i~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
.+++++.+...|..||.+||++|-+-= +.|..++..| .....++|.+-+++.|+||.+=+-++.
T Consensus 11 ~~~~~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~y-------------dWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 11 DDNDWNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQY-------------DWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp TTSECHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB----------------HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CCCcHHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCcc-------------CcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 457889999999999999999998642 2233222222 367899999999999999999998888
Q ss_pred CcCC
Q 015125 115 RVGT 118 (413)
Q Consensus 115 ~~~~ 118 (413)
++.+
T Consensus 78 cGgN 81 (402)
T PF01373_consen 78 CGGN 81 (402)
T ss_dssp BSSS
T ss_pred CCCC
Confidence 8764
No 131
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=79.54 E-value=30 Score=32.83 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=68.1
Q ss_pred HHHhhhhhHHHcCCCEEEcC-CCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCC
Q 015125 44 NLERKVPDISKSGFTSVWLP-PATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGH 122 (413)
Q Consensus 44 gi~~~L~yLk~lGv~~I~L~-Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~ 122 (413)
...+-++...+.|++.|.+. |+.+ .+.++..|+.++++|++|.+-+.+-..+.
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~~~---------------------~~~~~~~i~~ak~~G~~v~~~i~~~~~~~----- 145 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDALND---------------------VRNLEVAIKAVKKAGKHVEGAICYTGSPV----- 145 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecCCh---------------------HHHHHHHHHHHHHCCCeEEEEEEecCCCC-----
Confidence 45666777788888887762 2111 57899999999999999886442211000
Q ss_pred CCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEee-cccCCCcHH
Q 015125 123 GGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRF-DFARGYSAK 201 (413)
Q Consensus 123 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~ 201 (413)
.-.+++.+.++... +.|+|.+++ |++..+.|.
T Consensus 146 ----------------------------------------------~~~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~P~ 178 (275)
T cd07937 146 ----------------------------------------------HTLEYYVKLAKELE-DMGADSICIKDMAGLLTPY 178 (275)
T ss_pred ----------------------------------------------CCHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCHH
Confidence 00356788888876 899999987 788888888
Q ss_pred HHHHHHHhhCC
Q 015125 202 YVKEYIEGARP 212 (413)
Q Consensus 202 ~~~~~~~~~~~ 212 (413)
...++++.++.
T Consensus 179 ~v~~lv~~l~~ 189 (275)
T cd07937 179 AAYELVKALKK 189 (275)
T ss_pred HHHHHHHHHHH
Confidence 88888887763
No 132
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=79.06 E-value=3 Score=49.00 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=55.4
Q ss_pred CceeEEEeeecCCCCC---ccHHHHHhhhhhHHHcCCCEEEcCCCCC---CC--CCCCCCcccCCCCCCCCCCHHHH
Q 015125 24 GREILFQGFNWESCKH---DWWRNLERKVPDISKSGFTSVWLPPATH---SF--APEGYLPQNLYSLNSSYGSEHLL 92 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~---g~~~gi~~~L~yLk~lGv~~I~L~Pi~~---~~--~~~gY~~~d~~~id~~~Gt~~~~ 92 (413)
.-|+++|+|-=.+..+ |||..+.+-++.+++.|.+.|.|+|++. .. .+..|+|.+-+.++|-|=+.+++
T Consensus 172 ~wG~~~qLYsLRS~~~~GIGDfgdL~~~~d~la~~Ga~~lqlnPLhA~~p~~p~~~SPYsp~Sr~alNPlYIdle~l 248 (1693)
T PRK14507 172 DWGLAAQLYGLRSARNWGIGDFGDLGRLVRDAALRGASFLGLSPLHALFPTDPAKASPYSPSSRLFLNTLYIDVEAV 248 (1693)
T ss_pred ceEEEeeeeeeeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcCcccccccChHhcCHhhc
Confidence 3578999997654444 8999999999999999999999999993 22 46789999999999777665443
No 133
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=78.75 E-value=2.3 Score=41.77 Aligned_cols=134 Identities=9% Similarity=0.070 Sum_probs=71.1
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCC------C----CCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN------S----SYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id------~----~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
..+.|.+.|+.++.+++|.++|----. ..+++....+=.+. + .+=|.+|+++||+-|+++||+||-.+
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~--~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDD--QGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESS--TCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecC--CCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 478899999999999999999853111 01111111110000 0 13368999999999999999999776
Q ss_pred -ccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCe
Q 015125 111 -VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQD 189 (413)
Q Consensus 111 -V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDG 189 (413)
++.|++.-.. .|..+.. ..+. .....+...+....-..+|..+|++.+++.+.++..++-|.-.-
T Consensus 94 d~PGH~~~~l~----~~p~~~~--~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~ 159 (351)
T PF00728_consen 94 DTPGHAEAWLK----AYPELGC--SAWP--------EDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPSKY 159 (351)
T ss_dssp EESSS-HHHHH----HHHHHCC--CHTT--------CSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTSSE
T ss_pred cCchHHHHHHH----hCchhhc--cccc--------cccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCCCe
Confidence 4566655110 0000000 0000 00000000000001125889999999999999999887666333
Q ss_pred E
Q 015125 190 F 190 (413)
Q Consensus 190 f 190 (413)
|
T Consensus 160 i 160 (351)
T PF00728_consen 160 I 160 (351)
T ss_dssp E
T ss_pred E
Confidence 3
No 134
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=78.62 E-value=22 Score=33.34 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc----HHHHHHHHHhhCC
Q 015125 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS----AKYVKEYIEGARP 212 (413)
Q Consensus 167 ~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~----~~~~~~~~~~~~~ 212 (413)
+++-|+.+++.+..+++++++||+=+|-=.... ..++++++++..+
T Consensus 93 ~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~~~~~ 142 (256)
T cd06546 93 DDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMSLDGIIRLIDRLRSDFGP 142 (256)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEeeecCCCHhHHHHHHHHHHHHhCC
Confidence 456677777778788889999999999754433 2455666665543
No 135
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=78.59 E-value=27 Score=34.29 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
.+++.+.++... ++|+|.+++ |++..+.|+...++...++
T Consensus 143 ~e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~ 183 (337)
T PRK08195 143 PEKLAEQAKLME-SYGAQCVYVVDSAGALLPEDVRDRVRALR 183 (337)
T ss_pred HHHHHHHHHHHH-hCCCCEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 367888888876 899999985 8888899888887777765
No 136
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=77.71 E-value=43 Score=31.88 Aligned_cols=124 Identities=16% Similarity=0.118 Sum_probs=74.6
Q ss_pred HHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHH-HHHHHHHHH-HcCCEEEEEEccccCcCCCC
Q 015125 43 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHL-LKALLHKMK-QHKVRAMADIVINHRVGTTQ 120 (413)
Q Consensus 43 ~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~-~~~Lv~~~h-~~Gi~VilD~V~NH~~~~~~ 120 (413)
+.+-.-++.|++||+|+|+|-+.....++.-.+.. |=.+.++=-.+| |-+.+=+++ +.|++|+.=+.. .+.+-+
T Consensus 17 ~nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~--YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPv--laf~lp 92 (294)
T PF14883_consen 17 RNLDKLIQRIKDMGINTVYLQAFADPDGDGNADAV--YFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPV--LAFDLP 92 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeCCCCCCceeeE--EcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeeh--hhccCC
Confidence 34555677899999999999988766544433332 334455555555 445453555 889999866543 222211
Q ss_pred CCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEee
Q 015125 121 GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRF 192 (413)
Q Consensus 121 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~ 192 (413)
. ..+ +.... .. ...-.....|..-+|++|+.|.+....+..--.+||+=|
T Consensus 93 ~--~~~---------~~~~~---~~--------~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 93 K--VKR---------ADEVR---TD--------RPDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred C--cch---------hhhcc---cc--------CCCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 000 01000 00 001123445666789999999999999985559999877
No 137
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=77.68 E-value=5.2 Score=38.58 Aligned_cols=122 Identities=7% Similarity=0.010 Sum_probs=72.0
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCC-----------CCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSL-----------NSSYGSEHLLKALLHKMKQHKVRAMAD 109 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~i-----------d~~~Gt~~~~~~Lv~~~h~~Gi~VilD 109 (413)
..+.|.+.++.++.+++|.++|-=- . ...+.+....|=.+ ...+=|.+|+++||+-|.++||+||-.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~-D-~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLT-D-DQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeee-c-CCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 4778888999999999999987411 0 00111111111111 112236899999999999999999977
Q ss_pred E-ccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhc
Q 015125 110 I-VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV 185 (413)
Q Consensus 110 ~-V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~ 185 (413)
+ ++.|+..-... | ++....+. ....+ ...-..||..+|++.+++.++++.+++-|
T Consensus 92 iD~PGH~~a~~~~----~-------p~l~~~~~--~~~~~--------~~~~~~l~~~~~~t~~fl~~l~~e~~~lf 147 (303)
T cd02742 92 IDMPGHSTAFVKS----F-------PKLLTECY--AGLKL--------RDVFDPLDPTLPKGYDFLDDLFGEIAELF 147 (303)
T ss_pred ccchHHHHHHHHh----C-------HHhccCcc--ccCCC--------CCCCCccCCCCccHHHHHHHHHHHHHHhC
Confidence 6 45666541100 0 00000000 00000 01123588899999999999999988644
No 138
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=76.34 E-value=5.2 Score=37.21 Aligned_cols=64 Identities=17% Similarity=0.333 Sum_probs=44.5
Q ss_pred ccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 015125 21 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (413)
Q Consensus 21 ~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h 100 (413)
+-+| +++.+++... ..+.+-+.++++|||++|+++= | +..+ +.++..++|+.++
T Consensus 70 v~~G-Gtl~E~a~~q-------~~~~~yl~~~k~lGf~~IEiSd--------G-----ti~l-----~~~~r~~~I~~~~ 123 (244)
T PF02679_consen 70 VYPG-GTLFEVAYQQ-------GKFDEYLEECKELGFDAIEISD--------G-----TIDL-----PEEERLRLIRKAK 123 (244)
T ss_dssp EEE--HHHHHHHHHT-------T-HHHHHHHHHHCT-SEEEE----------S-----SS--------HHHHHHHHHHHC
T ss_pred EeCC-cHHHHHHHhc-------ChHHHHHHHHHHcCCCEEEecC--------C-----ceeC-----CHHHHHHHHHHHH
Confidence 3344 5666666653 3567789999999999999874 1 1233 4788999999999
Q ss_pred HcCCEEEEEE
Q 015125 101 QHKVRAMADI 110 (413)
Q Consensus 101 ~~Gi~VilD~ 110 (413)
++|++|+-.+
T Consensus 124 ~~Gf~v~~Ev 133 (244)
T PF02679_consen 124 EEGFKVLSEV 133 (244)
T ss_dssp CTTSEEEEEE
T ss_pred HCCCEEeecc
Confidence 9999999887
No 139
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=76.13 E-value=6.6 Score=35.11 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=31.2
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRA 106 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~V 106 (413)
+...+..|++||++.|=..|+- -+-..+||+.+.++|-++|+.+
T Consensus 137 vetAiaml~dmG~~SiKffPm~------------------Gl~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPMG------------------GLKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---T------------------TTTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHHcCCCeeeEeecC------------------CcccHHHHHHHHHHHHHcCcee
Confidence 5567889999999999988862 2336899999999999999886
No 140
>PRK01060 endonuclease IV; Provisional
Probab=75.92 E-value=5.3 Score=37.73 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=39.2
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRA 106 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~V 106 (413)
+.++.+.|+.++++|+++|+|.+--+ +.+. +..-++++++++.+.+.++||++
T Consensus 11 ~~~~~~~l~~~~~~G~d~vEl~~~~p----~~~~--------~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 11 AGGLEGAVAEAAEIGANAFMIFTGNP----QQWK--------RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCC----CCCc--------CCCCCHHHHHHHHHHHHHcCCCC
Confidence 34488899999999999999965311 1111 21237888999999999999995
No 141
>PLN03059 beta-galactosidase; Provisional
Probab=74.85 E-value=6 Score=43.19 Aligned_cols=56 Identities=7% Similarity=0.016 Sum_probs=39.1
Q ss_pred HhhhhhHHHcCCCEEEc-CCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 46 ERKVPDISKSGFTSVWL-PPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L-~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.++|.-+|++|+|+|.. .|..-+...-| . -.|.+..||.++++.|++.||.|||=.
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G--~-------~dF~G~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFWNGHEPSPG--N-------YYFEDRYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHHHcCCCeEEEEecccccCCCCC--e-------eeccchHHHHHHHHHHHHcCCEEEecC
Confidence 34677789999999986 33322221111 1 123457899999999999999999864
No 142
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=74.74 E-value=5.5 Score=40.16 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=40.5
Q ss_pred HHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCC---HHHHHHHHHHHHHcCCEEEEEE
Q 015125 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS---EHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 44 gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt---~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
-.++-+.++|+.|+|+|=|+=-...- ......+|.+=. ..-+.+.|+.|.++||+|++|+
T Consensus 74 ~~~~~~~~ik~~G~n~VRiPi~~~~~-------~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 74 ITEEDFDQIKSAGFNAVRIPIGYWAL-------QATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred hhhhHHHHHHHcCCcEEEcccchhhh-------hccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEe
Confidence 45788999999999999874321221 100014454432 2346777999999999999998
No 143
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=74.67 E-value=37 Score=31.91 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhCC
Q 015125 172 KDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGARP 212 (413)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~~ 212 (413)
+++.+.++... +.|+|.+++ |++..+.|.-..++.+.++.
T Consensus 141 ~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~ 181 (263)
T cd07943 141 EELAEQAKLME-SYGADCVYVTDSAGAMLPDDVRERVRALRE 181 (263)
T ss_pred HHHHHHHHHHH-HcCCCEEEEcCCCCCcCHHHHHHHHHHHHH
Confidence 67888888876 899999887 77788888888888887763
No 144
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=74.53 E-value=28 Score=34.18 Aligned_cols=73 Identities=15% Similarity=0.079 Sum_probs=42.8
Q ss_pred HHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCC
Q 015125 43 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 120 (413)
Q Consensus 43 ~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~ 120 (413)
+..++.....++=|+.-|..-...-++...++. .. -.+.. -...+.||+|++++|++|-++++=+ +|.+....
T Consensus 36 ~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~-~~-~~i~~-d~~i~~~k~l~~~vh~~Ga~i~~QL--~H~G~~~~ 108 (341)
T PF00724_consen 36 DRLIAYYERRAKGGAGLIITEATAVSPEGRGFP-GQ-PGIWD-DEQIPGLKKLADAVHAHGAKIIAQL--WHAGRQAN 108 (341)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEEEESSGGGSSST-TS-EBSSS-HHHHHHHHHHHHHHHHTTSEEEEEE--E--GGGSS
T ss_pred HHHHHHHHHHhhcCCceEEeccccccccccccc-cc-chhch-hhHHHHHHHHHHHHHhcCccceeec--cccccccC
Confidence 356666666667677777664444333222111 10 01110 0125789999999999999999887 88888553
No 145
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=74.52 E-value=13 Score=30.00 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=37.9
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
=.++..++..|++-|+++|+|+.=.....+++..| + .+.++++|++.- |+.||.
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP--------~---~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCP--------H---IDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCC--------C---HHHHHHHHHHHh--CCCEee
Confidence 56788899999999999999998665544333222 2 556666665544 998874
No 146
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=73.83 E-value=36 Score=31.82 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=38.6
Q ss_pred HHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 44 gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
++.+.++.+.++|+++|+|.+.-+.. +. +..-+.++.+++.+.+.++||+|.+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~----~~--------~~~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRS----WK--------GVRLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCC----CC--------CCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 57788999999999999996543321 11 1123567788888889999999764
No 147
>PLN02803 beta-amylase
Probab=73.66 E-value=11 Score=38.65 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=49.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCC---CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~P---i~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+-+.+...|..||.+||++|-+-= |.|..++.-| .....++|++-+++.|+||..=+-++.+|.
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Y-------------dWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 171 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKY-------------NWEGYAELVQMVQKHGLKLQVVMSFHQCGG 171 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcC-------------CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 348999999999999999998642 2233222222 367789999999999999999998888777
Q ss_pred C
Q 015125 118 T 118 (413)
Q Consensus 118 ~ 118 (413)
+
T Consensus 172 N 172 (548)
T PLN02803 172 N 172 (548)
T ss_pred C
Confidence 4
No 148
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=73.59 E-value=64 Score=30.28 Aligned_cols=52 Identities=12% Similarity=0.156 Sum_probs=36.9
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEE
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH-KVRAMA 108 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~-Gi~Vil 108 (413)
+.+.++.++++|++.|+|.+-.. +++ ..+.. +.++++++.+.+.++ |+.+.+
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~~~----~~~-------~~~~~-~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLGNP----RSW-------LSRPL-KKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCC----Ccc-------CCCCC-CHHHHHHHHHHHHHcCCCcEEE
Confidence 66789999999999999875211 111 11122 578899999999998 777765
No 149
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=73.03 E-value=15 Score=37.77 Aligned_cols=68 Identities=12% Similarity=0.264 Sum_probs=46.0
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
+.+....+-+.-+++||+++.=++=-...--+.|.. -. +.-...+=..+||++|+++||++|+.+ +|-
T Consensus 68 D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~----~~--~n~~~~~~Y~~~i~~l~~~gi~p~VtL--~H~ 135 (474)
T PRK09852 68 DFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDE----LT--PNQQGIAFYRSVFEECKKYGIEPLVTL--CHF 135 (474)
T ss_pred chhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCC----CC--CCHHHHHHHHHHHHHHHHcCCEEEEEe--eCC
Confidence 368888999999999999998776422221111110 00 112234568899999999999999988 554
No 150
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=71.11 E-value=13 Score=31.87 Aligned_cols=52 Identities=8% Similarity=0.112 Sum_probs=41.7
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.||+-+.+..+-|+++||..-- .|-+.--|++-+.+++++++++|++||+=.
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~-------------------~VvSAHRTPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEV-------------------RVVSAHRTPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEE-------------------EEEeccCCHHHHHHHHHHHHHCCCeEEEec
Confidence 4799999999999999995422 222344589999999999999999999854
No 151
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=70.97 E-value=7.4 Score=40.92 Aligned_cols=57 Identities=5% Similarity=-0.007 Sum_probs=39.9
Q ss_pred hhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 47 ~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
+.|..+|++|+|+|+.-=+.. ......=.-.|...-||.++|+.||+.|+-|+|-+=
T Consensus 53 ~~i~k~k~~Gln~IqtYVfWn--------~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiG 109 (649)
T KOG0496|consen 53 DLIKKAKAGGLNVIQTYVFWN--------LHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVILRIG 109 (649)
T ss_pred HHHHHHHhcCCceeeeeeecc--------cccCCCCcccccchhHHHHHHHHHHHCCeEEEecCC
Confidence 456678999999998632221 111111123566788999999999999999999763
No 152
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=70.42 E-value=9.8 Score=36.27 Aligned_cols=60 Identities=7% Similarity=0.011 Sum_probs=39.9
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
.+.+..||+.|++.|.+.. +. ++.-|-.+.+. .+.++..+.++.+|+.||+|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~--E~------~~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNL--DT------SQEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEcc--cC------CHHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 4555566666666666552 21 22222334433 5788999999999999999999988865
No 153
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=70.09 E-value=8.5 Score=37.32 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=41.8
Q ss_pred HhhhhhHHHcCCC-EEEcCCCCCCCCCCCCCcccC-CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 46 ERKVPDISKSGFT-SVWLPPATHSFAPEGYLPQNL-YSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 46 ~~~L~yLk~lGv~-~I~L~Pi~~~~~~~gY~~~d~-~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
.++|..|++.|++ .|.|.+ ++. +..-. ..++..+ +.+++.+.++.+|++||+|.+++.+..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~--ES~-----~d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G~ 179 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL--ETA-----NDRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFKP 179 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec--CcC-----CHHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEecC
Confidence 4566667777776 466654 111 11112 2455555 788999999999999999999999873
No 154
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=69.90 E-value=12 Score=35.89 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=39.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCC-----CCCCCCc--------ccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSF-----APEGYLP--------QNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-----~~~gY~~--------~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vi 107 (413)
+...+..-|+.+|+-|||.|.+.=+-+.. ...|..+ .|+..++|.| -+-+.+.|+.|.++||.+
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~- 104 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEA- 104 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EE-
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeE-
Confidence 45666777999999999999985433321 1223333 2444444333 467999999999999988
Q ss_pred EEEcccc
Q 015125 108 ADIVINH 114 (413)
Q Consensus 108 lD~V~NH 114 (413)
++|+=|
T Consensus 105 -~lv~~w 110 (289)
T PF13204_consen 105 -ALVPFW 110 (289)
T ss_dssp -EEESS-
T ss_pred -EEEEEE
Confidence 477665
No 155
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=68.95 E-value=9.5 Score=33.30 Aligned_cols=49 Identities=8% Similarity=0.187 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCcccCCC-------CeEEEEec----CCEEEEEE-C------------CEEEEEEcCCC
Q 015125 343 IHNQIVKLMDVRRQQDIHSRS-------SIKILEAQ----SNLYSAII-G------------DKVCMKIGDGS 391 (413)
Q Consensus 343 l~~~i~~L~~lR~~~p~l~~G-------~~~~~~~~----~~~~~~~r-~------------~~~lv~lnn~~ 391 (413)
..++++.|++||+..|+++-+ ++.+...+ .++++.+- + +.++|++|-+.
T Consensus 43 a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~ 115 (168)
T PF11852_consen 43 ASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATP 115 (168)
T ss_dssp HHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SS
T ss_pred HHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCC
Confidence 578999999999999999977 44555543 35788764 2 24777777754
No 156
>PRK12928 lipoyl synthase; Provisional
Probab=68.66 E-value=19 Score=34.49 Aligned_cols=78 Identities=10% Similarity=0.085 Sum_probs=57.7
Q ss_pred cccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 015125 18 GAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLH 97 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~ 97 (413)
+|.+....++|+ +| .. +.+.+.+.|..|+++|++.|-+.|-..- +.. +..| .+|=++++|.++-+
T Consensus 201 gp~i~~~s~iIv-G~-GE-----T~ed~~etl~~Lrel~~d~v~i~~Yl~p-~~~------~~~v-~~~~~~~~f~~~~~ 265 (290)
T PRK12928 201 APDIPTKSGLML-GL-GE-----TEDEVIETLRDLRAVGCDRLTIGQYLRP-SLA------HLPV-QRYWTPEEFEALGQ 265 (290)
T ss_pred CCCceecccEEE-eC-CC-----CHHHHHHHHHHHHhcCCCEEEEEcCCCC-Ccc------CCce-eeccCHHHHHHHHH
Confidence 455656555566 56 66 7999999999999999999998774332 111 2333 47778999999999
Q ss_pred HHHHcCCEEEEEE
Q 015125 98 KMKQHKVRAMADI 110 (413)
Q Consensus 98 ~~h~~Gi~VilD~ 110 (413)
.+.+.|.+-|.-.
T Consensus 266 ~~~~~g~~~~~~~ 278 (290)
T PRK12928 266 IARELGFSHVRSG 278 (290)
T ss_pred HHHHcCCceeEec
Confidence 9999998766543
No 157
>PTZ00445 p36-lilke protein; Provisional
Probab=68.64 E-value=11 Score=34.17 Aligned_cols=61 Identities=11% Similarity=0.165 Sum_probs=40.1
Q ss_pred HHHHHhhhhhHHHcCCCEEEc------CCCCCCCCCCCCCcccCCCCCCCCCC--HHHHHHHHHHHHHcCCEEEE
Q 015125 42 WRNLERKVPDISKSGFTSVWL------PPATHSFAPEGYLPQNLYSLNSSYGS--EHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L------~Pi~~~~~~~gY~~~d~~~id~~~Gt--~~~~~~Lv~~~h~~Gi~Vil 108 (413)
-+.+..-.+.|++.||.+|-+ .++ ...||.-.+ +-+..+++ ..+|+.+++++++.||+|++
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~----HsgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIASDFDLTMITK----HSGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEecchhhhhhh----hcccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 344555567799999999975 222 234554432 22233322 35599999999999999985
No 158
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=68.42 E-value=27 Score=35.91 Aligned_cols=101 Identities=12% Similarity=0.205 Sum_probs=64.9
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
+.|....+-+.-+|+||+++-=++=-....-+.|.. .+ .--..+=.++||++|.++||+-|+=+ .|-.-
T Consensus 50 d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~-----~~--N~~gl~~Y~~lid~l~~~GI~P~VTL--~H~dl-- 118 (467)
T TIGR01233 50 DFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYG-----EV--NEKGVEFYHKLFAECHKRHVEPFVTL--HHFDT-- 118 (467)
T ss_pred chhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCC-----Cc--CHHHHHHHHHHHHHHHHcCCEEEEec--cCCCC--
Confidence 478888899999999999987765322211122211 11 11234558999999999999999765 56322
Q ss_pred CCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCC
Q 015125 120 QGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQ 188 (413)
Q Consensus 120 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvD 188 (413)
| .++. . .++| .|+++.+++.++++..+++|| |
T Consensus 119 P------~~L~------------~-~GGW-----------------~n~~~v~~F~~YA~~~f~~fg-d 150 (467)
T TIGR01233 119 P------EALH------------S-NGDF-----------------LNRENIEHFIDYAAFCFEEFP-E 150 (467)
T ss_pred c------HHHH------------H-cCCC-----------------CCHHHHHHHHHHHHHHHHHhC-C
Confidence 1 0010 0 1222 478888888888888888887 5
No 159
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=68.27 E-value=8.1 Score=37.92 Aligned_cols=44 Identities=7% Similarity=0.042 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEeecccCCC-c-------HHHHHHHHHhhC
Q 015125 168 HFVRKDIIAWLRWLRNTVGFQDFRFDFARGY-S-------AKYVKEYIEGAR 211 (413)
Q Consensus 168 ~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i-~-------~~~~~~~~~~~~ 211 (413)
++.+..+++-|...++.+|+||+=+|.=... + ..|++++.++++
T Consensus 85 ~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~~~L~~~~~ 136 (339)
T cd06547 85 EDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFLRYLKAKLH 136 (339)
T ss_pred cccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHHHHHHHHHh
Confidence 3345556666777777899999999976555 2 236677777665
No 160
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=68.27 E-value=25 Score=36.31 Aligned_cols=64 Identities=8% Similarity=0.207 Sum_probs=42.3
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.|....+-+.-+|+||+++-=++=-...--+.|... . +.-...+=..+||++|.++||+.|+.+
T Consensus 67 ~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~----~--~N~~gl~~Y~~lid~l~~~GI~P~vTL 130 (477)
T PRK15014 67 FYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEA----Q--PNEEGLKFYDDMFDELLKYNIEPVITL 130 (477)
T ss_pred cccccHHHHHHHHHcCCCEEEecccceeeccCCCCC----C--CCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 566778899999999999876643221111111100 0 111234568999999999999999988
No 161
>PLN02801 beta-amylase
Probab=67.84 E-value=17 Score=37.26 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=50.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCC---CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~P---i~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+-+++...|..||.+||++|-+-= |.|..++..| .....++|++-+++.|+||.+=+-++.++.
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Y-------------dWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 101 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQY-------------DWSAYRSLFELVQSFGLKIQAIMSFHQCGG 101 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc-------------CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 678899999999999999998642 2232222222 367789999999999999999888888777
Q ss_pred C
Q 015125 118 T 118 (413)
Q Consensus 118 ~ 118 (413)
+
T Consensus 102 N 102 (517)
T PLN02801 102 N 102 (517)
T ss_pred C
Confidence 4
No 162
>PRK09936 hypothetical protein; Provisional
Probab=67.30 E-value=17 Score=34.58 Aligned_cols=71 Identities=15% Similarity=0.312 Sum_probs=52.1
Q ss_pred eeEEEeeecC-CCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCC-HHHHHHHHHHHHHcC
Q 015125 26 EILFQGFNWE-SCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS-EHLLKALLHKMKQHK 103 (413)
Q Consensus 26 ~~i~~~f~~~-~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt-~~~~~~Lv~~~h~~G 103 (413)
+++||-++.+ ...+-.|+. .+..++.+|++.|.+- ..+| -++.||+ ..-|.+++++|++.|
T Consensus 23 g~F~Qp~n~d~~~~~~qWq~---~~~~~~~~G~~tLivQ-------Wt~y-------G~~~fg~~~g~La~~l~~A~~~G 85 (296)
T PRK09936 23 GIFYQPQNRDSQVTDTQWQG---LWSQLRLQGFDTLVVQ-------WTRY-------GDADFGGQRGWLAKRLAAAQQAG 85 (296)
T ss_pred cceeccccccCCCCHHHHHH---HHHHHHHcCCcEEEEE-------eeec-------cCCCcccchHHHHHHHHHHHHcC
Confidence 6899999887 233356766 5667899999999863 2233 1225655 456999999999999
Q ss_pred CEEEEEEccc
Q 015125 104 VRAMADIVIN 113 (413)
Q Consensus 104 i~VilD~V~N 113 (413)
|+|++=+-++
T Consensus 86 l~v~vGL~~D 95 (296)
T PRK09936 86 LKLVVGLYAD 95 (296)
T ss_pred CEEEEcccCC
Confidence 9999988665
No 163
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=67.16 E-value=11 Score=35.69 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=37.7
Q ss_pred HHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 015125 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107 (413)
Q Consensus 44 gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vi 107 (413)
.+.+.|+.++++|+++|+|.+--.. ..+++.--+.++.++|.+.+.++||+|.
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDETD-----------DRLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCcc-----------chhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 4677899999999999999542110 0111111257889999999999999985
No 164
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=66.52 E-value=11 Score=37.16 Aligned_cols=64 Identities=9% Similarity=0.115 Sum_probs=44.9
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEEccccCcC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~-VilD~V~NH~~~ 117 (413)
.++|..|+++||+.|.|..= ..++.-+-.+ -+-.+.++..+.++.+++.|+. |-+|+.+...+.
T Consensus 100 ~e~l~~l~~~Gv~risiGvq-------S~~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 164 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQ-------SFRDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQ 164 (360)
T ss_pred HHHHHHHHHcCCCEEEEecc-------cCChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCC
Confidence 36677788888887776541 1122222344 3556789999999999999996 779999886544
No 165
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=66.41 E-value=11 Score=34.16 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=33.0
Q ss_pred HHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 015125 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR 105 (413)
Q Consensus 44 gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~ 105 (413)
.+...+..|++||.+.|=..|+- -+-..+||+.+.++|.++|+.
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~------------------Gl~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMG------------------GLKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecC------------------CcccHHHHHHHHHHHHHcCCc
Confidence 46678889999999999988863 222467777777777777765
No 166
>PRK07094 biotin synthase; Provisional
Probab=66.31 E-value=11 Score=36.61 Aligned_cols=36 Identities=14% Similarity=-0.031 Sum_probs=29.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 81 SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 81 ~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
.+.+ -.+.++..+.++.+|+.||.|..++++.+-+.
T Consensus 157 ~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpge 192 (323)
T PRK07094 157 KLHP-GMSFENRIACLKDLKELGYEVGSGFMVGLPGQ 192 (323)
T ss_pred HhCC-CCCHHHHHHHHHHHHHcCCeecceEEEECCCC
Confidence 4445 36789999999999999999999999987554
No 167
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=66.22 E-value=10 Score=38.45 Aligned_cols=63 Identities=10% Similarity=0.141 Sum_probs=40.7
Q ss_pred hhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE-EEEccccCcC
Q 015125 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM-ADIVINHRVG 117 (413)
Q Consensus 47 ~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vi-lD~V~NH~~~ 117 (413)
++|..|+++||+.|.|.- ...+......++... +.++..+.++.|++.|+.+| +|+.++.-+.
T Consensus 142 e~l~~l~~~G~~rvslGv-------QS~~~~~L~~l~R~~-~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~q 205 (430)
T PRK08208 142 EKLALLAARGVNRLSIGV-------QSFHDSELHALHRPQ-KRADVHQALEWIRAAGFPILNIDLIYGIPGQ 205 (430)
T ss_pred HHHHHHHHcCCCEEEEec-------ccCCHHHHHHhCCCC-CHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 556666666666666543 111112223343333 68899999999999999865 9999886554
No 168
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=65.20 E-value=9.1 Score=37.54 Aligned_cols=75 Identities=9% Similarity=0.022 Sum_probs=46.3
Q ss_pred CCceeEEEe----eecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCC-C---CCCCHHHHHH
Q 015125 23 NGREILFQG----FNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN-S---SYGSEHLLKA 94 (413)
Q Consensus 23 ~~~~~i~~~----f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id-~---~~Gt~~~~~~ 94 (413)
.+.+.|+++ +..+...+.+..-+.--.+.+++||.|+|=++= ||..| + +--..+.+++
T Consensus 82 ~~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAdAVk~lv--------------~~~~d~~~~~~~~~~~~l~r 147 (340)
T PRK12858 82 PNCGLLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGADAVKLLL--------------YYRPDEDDAINDRKHAFVER 147 (340)
T ss_pred CCCCeEEEecccccccCCCCCCccccccccHHHHHHcCCCEEEEEE--------------EeCCCcchHHHHHHHHHHHH
Confidence 455678884 332222111222233335779999999987654 22222 1 1113567999
Q ss_pred HHHHHHHcCCEEEEEEc
Q 015125 95 LLHKMKQHKVRAMADIV 111 (413)
Q Consensus 95 Lv~~~h~~Gi~VilD~V 111 (413)
++++||+.||-+|+.++
T Consensus 148 v~~ec~~~giPlllE~l 164 (340)
T PRK12858 148 VGAECRANDIPFFLEPL 164 (340)
T ss_pred HHHHHHHcCCceEEEEe
Confidence 99999999999999863
No 169
>PLN02905 beta-amylase
Probab=64.99 E-value=20 Score=37.60 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=51.2
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCC---CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~P---i~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
.+.+.+...|..||.+||++|-+-= |.|..++.-| ....+++|++-+++.|+||.+=+-++.++
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Y-------------dWsgY~~L~~mvr~~GLKlqvVMSFHqCG 349 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEY-------------NWNGYKRLFQMVRELKLKLQVVMSFHECG 349 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcC-------------CcHHHHHHHHHHHHcCCeEEEEEEecccC
Confidence 4789999999999999999998643 2232222222 36778999999999999999988888877
Q ss_pred CC
Q 015125 117 GT 118 (413)
Q Consensus 117 ~~ 118 (413)
.+
T Consensus 350 GN 351 (702)
T PLN02905 350 GN 351 (702)
T ss_pred CC
Confidence 74
No 170
>PRK05939 hypothetical protein; Provisional
Probab=64.89 E-value=15 Score=36.78 Aligned_cols=84 Identities=8% Similarity=0.041 Sum_probs=50.6
Q ss_pred ccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCC-C---CCCCCCCcccCCCCCCCCCCHHHHHHHH
Q 015125 21 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATH-S---FAPEGYLPQNLYSLNSSYGSEHLLKALL 96 (413)
Q Consensus 21 ~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~-~---~~~~gY~~~d~~~id~~~Gt~~~~~~Lv 96 (413)
+++|..||+.-.. |-+...-+..++..|+..+++.+.-. . .-...=...-.-.+....|...++++++
T Consensus 83 l~~Gd~Vv~~~~~--------y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~ 154 (397)
T PRK05939 83 LRAGDHLVSSQFL--------FGNTNSLFGTLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIG 154 (397)
T ss_pred cCCCCEEEECCCc--------cccHHHHHHHHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHH
Confidence 5667667664432 22222223346778998888765310 0 0011111111223445678889999999
Q ss_pred HHHHHcCCEEEEEEcc
Q 015125 97 HKMKQHKVRAMADIVI 112 (413)
Q Consensus 97 ~~~h~~Gi~VilD~V~ 112 (413)
+.||++|+.||+|-+.
T Consensus 155 ~la~~~gi~livD~t~ 170 (397)
T PRK05939 155 ALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHHHcCCEEEEECCc
Confidence 9999999999999875
No 171
>PLN02161 beta-amylase
Probab=64.64 E-value=23 Score=36.37 Aligned_cols=66 Identities=9% Similarity=0.210 Sum_probs=50.4
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCC---CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~P---i~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
.+.+.+...|..||.+||++|-+-= |.|..++.-| .....++|++-+++.|+||.+=+-++.++
T Consensus 114 ~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Y-------------dWsgY~~l~~mvr~~GLKlq~vmSFHqCG 180 (531)
T PLN02161 114 KRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEF-------------KWSLYEELFRLISEAGLKLHVALCFHSNM 180 (531)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcC-------------CcHHHHHHHHHHHHcCCeEEEEEEecccC
Confidence 3688999999999999999998642 2233222222 36778999999999999999988888766
Q ss_pred CC
Q 015125 117 GT 118 (413)
Q Consensus 117 ~~ 118 (413)
.+
T Consensus 181 GN 182 (531)
T PLN02161 181 HL 182 (531)
T ss_pred CC
Confidence 53
No 172
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=64.25 E-value=15 Score=38.09 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=46.5
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEEccccCcC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV-RAMADIVINHRVG 117 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi-~VilD~V~NH~~~ 117 (413)
.++|..|++.||+.|.|.|=. .+..-+-.+. +-.+.++..+.++.|++.|+ .|-+|+.+.-.+.
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS-------~~d~vLk~ig-R~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgE 333 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQT-------MNDETLKAIG-RHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGE 333 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCc-------CCHHHHHHhC-CCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCC
Confidence 577888889999988887711 1112223443 34688999999999999999 7889999886443
No 173
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=64.08 E-value=78 Score=31.37 Aligned_cols=29 Identities=7% Similarity=-0.035 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
.+.|+++++++|++|-++++= ++|.|...
T Consensus 78 i~~~~~lad~vH~~Ga~i~~Q--L~H~Gr~~ 106 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAVQ--LWHTGRIS 106 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEEe--ccCCCCCC
Confidence 577999999999999999985 58988764
No 174
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=63.90 E-value=37 Score=30.16 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc---------HHHHHHHHHhhCC
Q 015125 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS---------AKYVKEYIEGARP 212 (413)
Q Consensus 166 ~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~---------~~~~~~~~~~~~~ 212 (413)
.++..|+.+++.+..+++++++||+-+|--.... ..+++++.+++++
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~ 139 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGA 139 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcc
Confidence 4677888899988888899999999999743222 2356666666654
No 175
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=63.58 E-value=12 Score=37.18 Aligned_cols=33 Identities=6% Similarity=-0.049 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEEccccCcC
Q 015125 85 SYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (413)
Q Consensus 85 ~~Gt~~~~~~Lv~~~h~~Gi~-VilD~V~NH~~~ 117 (413)
+-.+.++..+.++.+++.|+. |.+|++++.-+.
T Consensus 139 R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgq 172 (375)
T PRK05628 139 RTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGE 172 (375)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCC
Confidence 345778899999999999999 999999987544
No 176
>PRK05967 cystathionine beta-lyase; Provisional
Probab=63.37 E-value=21 Score=35.87 Aligned_cols=85 Identities=11% Similarity=0.050 Sum_probs=51.5
Q ss_pred ccCCceeEEEeeecCCCCCccHHHHHhhh-hhHHHcCCCEEEcCCCC----CCCCCCCCCcccCCCCCCCCCCHHHHHHH
Q 015125 21 IRNGREILFQGFNWESCKHDWWRNLERKV-PDISKSGFTSVWLPPAT----HSFAPEGYLPQNLYSLNSSYGSEHLLKAL 95 (413)
Q Consensus 21 ~~~~~~~i~~~f~~~~~~~g~~~gi~~~L-~yLk~lGv~~I~L~Pi~----~~~~~~gY~~~d~~~id~~~Gt~~~~~~L 95 (413)
+++|..||+.-- .|-+....+ .-++..|+...++.|-. +..-...-...-...+....++..+++++
T Consensus 100 l~~GD~Vlv~~~--------~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I 171 (395)
T PRK05967 100 LSPGDHALIVDS--------VYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAI 171 (395)
T ss_pred cCCCCEEEEccC--------CcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHH
Confidence 566666666521 233333333 34677899888875421 00001111122222333447899999999
Q ss_pred HHHHHHcCCEEEEEEccc
Q 015125 96 LHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 96 v~~~h~~Gi~VilD~V~N 113 (413)
++.||++|+-||+|-++.
T Consensus 172 ~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 172 AEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred HHHHHHhCCEEEEECCcc
Confidence 999999999999999885
No 177
>PLN00197 beta-amylase; Provisional
Probab=62.57 E-value=25 Score=36.48 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=50.1
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCC---CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~P---i~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+-+.+...|..||.+||++|-+-= |.|..++.-| .....++|++-+++.|+||.+=+-++.++.
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Y-------------dWsgY~~L~~mvr~~GLKlq~VmSFHqCGG 191 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVY-------------NWGGYNELLEMAKRHGLKVQAVMSFHQCGG 191 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcC-------------CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 567899999999999999998642 2233222222 367789999999999999999888888777
Q ss_pred C
Q 015125 118 T 118 (413)
Q Consensus 118 ~ 118 (413)
+
T Consensus 192 N 192 (573)
T PLN00197 192 N 192 (573)
T ss_pred C
Confidence 4
No 178
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=61.95 E-value=27 Score=33.50 Aligned_cols=68 Identities=10% Similarity=0.093 Sum_probs=43.4
Q ss_pred eeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 31 GFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 31 ~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
+|.|+-.-.-+...+.+-..-|+++|||+|-|.=+.... ..+.+. -.+.+++|.+.+...||||.|-+
T Consensus 45 if~~~~~~~~~~~R~~~YARllASiGINgvvlNNVNa~~----------~~Lt~~--~l~~v~~lAdvfRpYGIkv~LSv 112 (328)
T PF07488_consen 45 IFFWDGLPRRDLTRYRDYARLLASIGINGVVLNNVNANP----------KLLTPE--YLDKVARLADVFRPYGIKVYLSV 112 (328)
T ss_dssp SSEETTEETS--HHHHHHHHHHHHTT--EEE-S-SS--C----------GGGSTT--THHHHHHHHHHHHHTT-EEEEEE
T ss_pred ccccCCCcccchhHHHHHHHHHhhcCCceEEecccccCh----------hhcCHH--HHHHHHHHHHHHhhcCCEEEEEe
Confidence 344443333467788888888999999999998876653 222222 37889999999999999999977
No 179
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=61.77 E-value=19 Score=33.83 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=36.4
Q ss_pred HHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 015125 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107 (413)
Q Consensus 44 gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vi 107 (413)
.+.+.|+.++++|+++|+|.+- ..+-|. +.+ +..+.++|.+.+.++||+|.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~----~~~~~~--------~~~-~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGG----RPHAFA--------PDL-KAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccC----Cccccc--------ccc-CchHHHHHHHHHHHcCCeEE
Confidence 4788999999999999998431 011111 111 34678899999999999985
No 180
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=61.54 E-value=50 Score=32.31 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
.+.||+|++++|++|-++++=+ +|.+...
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql--~h~G~~~ 109 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQL--NHPGRQS 109 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc--cCCCcCC
Confidence 5789999999999999998876 7887753
No 181
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=61.40 E-value=46 Score=34.28 Aligned_cols=66 Identities=14% Similarity=0.295 Sum_probs=45.5
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
+.+..-.|-+.-+|+||+++-=++=-...--+.|-. .+ .--..+=.++||++|.++||+-|+-+ .|
T Consensus 51 d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g-----~v--N~~gl~~Y~~lid~l~~~GI~P~VTL--~H 116 (469)
T PRK13511 51 DFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYG-----EV--NPKGVEYYHRLFAECHKRHVEPFVTL--HH 116 (469)
T ss_pred chhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCC-----Cc--CHHHHHHHHHHHHHHHHcCCEEEEEe--cC
Confidence 478888999999999999987665322211112211 12 11235668999999999999999877 45
No 182
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=61.19 E-value=8.1 Score=37.05 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
+.++++++.+-||++||+|.||..
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 379999999999999999999984
No 183
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=60.95 E-value=30 Score=33.23 Aligned_cols=111 Identities=10% Similarity=0.032 Sum_probs=67.2
Q ss_pred eeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc--CCEEEE
Q 015125 31 GFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH--KVRAMA 108 (413)
Q Consensus 31 ~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~--Gi~Vil 108 (413)
.|.|+ .+.+.+.+..+.++||.+|-|-|+-+... +|-..=...+....-+++.|+++++. .|-||-
T Consensus 45 ~~r~s------~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~------Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~vi~ 112 (320)
T cd04824 45 INRYG------VNRLEEFLRPLVAKGLRSVILFGVPLKPG------KDDRSGSAADDEDGPVIQAIKLIREEFPELLIAC 112 (320)
T ss_pred ceeeC------HHHHHHHHHHHHHCCCCEEEEeCCCcccc------CCcCccccccCCCChHHHHHHHHHHhCCCcEEEE
Confidence 45666 99999999999999999999999842210 11000001122222355555555553 899999
Q ss_pred EEccccCcCCCCCCCCcccccCCCCCCCCCCC-eeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCC
Q 015125 109 DIVINHRVGTTQGHGGKYNRYDGIPLSWDEHA-VTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGF 187 (413)
Q Consensus 109 D~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gv 187 (413)
|+.+-.-... .+| +.. . +=...|.+..+.+.+...-.. +-|+
T Consensus 113 Dvclc~YT~h-------------------GHcGil~-~----------------~g~vdND~Tl~~L~k~Avs~A-~AGA 155 (320)
T cd04824 113 DVCLCEYTSH-------------------GHCGILY-E----------------DGTINNEASVKRLAEVALAYA-KAGA 155 (320)
T ss_pred eeeccCCCCC-------------------CcceeEC-C----------------CCcCcCHHHHHHHHHHHHHHH-HhCC
Confidence 9988753331 111 000 0 002347777788888777775 8888
Q ss_pred CeE
Q 015125 188 QDF 190 (413)
Q Consensus 188 DGf 190 (413)
|-+
T Consensus 156 DiV 158 (320)
T cd04824 156 HIV 158 (320)
T ss_pred CEE
Confidence 765
No 184
>PLN02705 beta-amylase
Probab=60.12 E-value=26 Score=36.74 Aligned_cols=65 Identities=9% Similarity=0.168 Sum_probs=50.2
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCC---CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~P---i~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+-+.|...|..||.+||++|-+-= |.|..++.-| ....+++|++-+++.|+||.+=+-++.++.
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Y-------------dWsgY~~L~~mvr~~GLKlqvVmSFHqCGG 332 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKY-------------VWSGYRELFNIIREFKLKLQVVMAFHEYGG 332 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcC-------------CcHHHHHHHHHHHHcCCeEEEEEEeeccCC
Confidence 678999999999999999998642 2232222222 367789999999999999999888888777
Q ss_pred C
Q 015125 118 T 118 (413)
Q Consensus 118 ~ 118 (413)
+
T Consensus 333 N 333 (681)
T PLN02705 333 N 333 (681)
T ss_pred C
Confidence 4
No 185
>PRK05660 HemN family oxidoreductase; Provisional
Probab=60.11 E-value=17 Score=36.27 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=44.3
Q ss_pred hhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE-EEEccccCcC
Q 015125 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM-ADIVINHRVG 117 (413)
Q Consensus 47 ~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vi-lD~V~NH~~~ 117 (413)
++|..|+++|||.|.|.. ...++.-+-.+. +..+.++..+-++.+++.|++.| +|+.+...+.
T Consensus 108 e~l~~Lk~~Gv~risiGv-------qS~~~~~L~~l~-r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgq 171 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGV-------QSFSEEKLKRLG-RIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQ 171 (378)
T ss_pred HHHHHHHHcCCCEEEecc-------CcCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 677777888888887764 112222233443 44678889999999999999864 9999886554
No 186
>PRK06256 biotin synthase; Validated
Probab=59.76 E-value=14 Score=36.00 Aligned_cols=34 Identities=6% Similarity=-0.053 Sum_probs=28.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 80 YSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 80 ~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
-.+.+. .+.++..+.++.||+.||+|-..+++.+
T Consensus 178 ~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 178 PNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred hhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 345443 3788999999999999999999999876
No 187
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=59.46 E-value=22 Score=33.18 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=17.8
Q ss_pred HHhhhhhHHHcCCCEEEcCCC
Q 015125 45 LERKVPDISKSGFTSVWLPPA 65 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi 65 (413)
+.+.++.++++|+++|+|...
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~ 37 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFP 37 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCC
Confidence 667899999999999998653
No 188
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=59.37 E-value=38 Score=32.62 Aligned_cols=120 Identities=13% Similarity=0.147 Sum_probs=71.2
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc--CCEEEEEEccccCcCCC
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH--KVRAMADIVINHRVGTT 119 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~--Gi~VilD~V~NH~~~~~ 119 (413)
.+.+.+.+..+.++||++|-|-|+-+.....|= ..+....-.++-|+++++. .|-||.|+.+-.-..
T Consensus 60 id~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs---------~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~-- 128 (322)
T PRK13384 60 ESALADEIERLYALGIRYVMPFGISHHKDAKGS---------DTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTD-- 128 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcc---------cccCCCChHHHHHHHHHHHCCCeEEEeeeecccCCC--
Confidence 999999999999999999999998332211110 1111122345555566654 899999998874333
Q ss_pred CCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc
Q 015125 120 QGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS 199 (413)
Q Consensus 120 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~ 199 (413)
|.+| ..- -+=...|.+..+.+.+...-.. +-|+|-+- ...|-
T Consensus 129 -----------------hGHc---------------Gil--~~g~i~ND~Tl~~L~~~Als~A-~AGADiVA---PSdMM 170 (322)
T PRK13384 129 -----------------HGHC---------------GVL--HNDEVDNDATVENLVKQSVTAA-KAGADMLA---PSAMM 170 (322)
T ss_pred -----------------CCce---------------eec--cCCcCccHHHHHHHHHHHHHHH-HcCCCeEe---ccccc
Confidence 1111 000 0001357777888888777775 88887652 23333
Q ss_pred HHHHHHHHHhh
Q 015125 200 AKYVKEYIEGA 210 (413)
Q Consensus 200 ~~~~~~~~~~~ 210 (413)
..-...+.+++
T Consensus 171 DGrV~aIR~aL 181 (322)
T PRK13384 171 DGQVKAIRQGL 181 (322)
T ss_pred ccHHHHHHHHH
Confidence 33344444443
No 189
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=58.61 E-value=21 Score=34.22 Aligned_cols=47 Identities=13% Similarity=0.081 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc------HHHHHHHHHhhCC
Q 015125 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS------AKYVKEYIEGARP 212 (413)
Q Consensus 166 ~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~------~~~~~~~~~~~~~ 212 (413)
.++..|+.+++.+..+++++|.||+-+|--..-+ ..|++++.+++++
T Consensus 84 ~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~ 136 (298)
T cd06549 84 ADPSARAKFIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPA 136 (298)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhh
Confidence 4688899999998888899999999999743322 2367777777654
No 190
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=58.13 E-value=35 Score=32.23 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=35.2
Q ss_pred CCCCc--cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 36 SCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 36 ~~~~g--~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
|.++| |++++.+.++++.+.||++|.+.-- ...++.+ |.+|-+++++.+.+
T Consensus 9 f~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~Gs----------tGE~~~l-----s~~Er~~l~~~~~~ 61 (281)
T cd00408 9 FTADGEVDLDALRRLVEFLIEAGVDGLVVLGT----------TGEAPTL-----TDEERKEVIEAVVE 61 (281)
T ss_pred cCCCCCcCHHHHHHHHHHHHHcCCCEEEECCC----------CcccccC-----CHHHHHHHHHHHHH
Confidence 34455 8999999999999999999997651 1223333 45666666665554
No 191
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=58.07 E-value=1.3e+02 Score=29.52 Aligned_cols=75 Identities=8% Similarity=-0.066 Sum_probs=46.1
Q ss_pred Ccc-HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 39 HDW-WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 39 ~g~-~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+|. =+..++.....++=|+.-|..-....++...++ +.. -.+... .-.+.+++|++++|++|-++++=+ +|.+.
T Consensus 32 ~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~-~~~-~~~~~d-~~i~~~r~l~d~vh~~G~~i~~QL--~H~G~ 106 (337)
T PRK13523 32 DGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRIS-DKD-LGIWDD-EHIEGLHKLVTFIHDHGAKAAIQL--AHAGR 106 (337)
T ss_pred CCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCC-CCc-eecCCH-HHHHHHHHHHHHHHhcCCEEEEEc--cCCCC
Confidence 453 245555566666678888877655544432221 111 011100 125789999999999999999877 88777
Q ss_pred C
Q 015125 118 T 118 (413)
Q Consensus 118 ~ 118 (413)
.
T Consensus 107 ~ 107 (337)
T PRK13523 107 K 107 (337)
T ss_pred C
Confidence 4
No 192
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=57.65 E-value=1.5e+02 Score=26.93 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhcCCCeEeecccCCCcHHHHHHHHHh
Q 015125 172 KDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEG 209 (413)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfR~D~a~~i~~~~~~~~~~~ 209 (413)
-.+++.+..++ +.||+.||+|.-..- .+...++++.
T Consensus 156 l~l~~~l~~L~-~~Gv~~~rI~~r~~~-~~~~~~iv~~ 191 (233)
T PF01136_consen 156 LCLLDELPELK-DAGVDSFRIDGRTES-PEYIEEIVKA 191 (233)
T ss_pred hhHHHHHHHHH-HcCCCEEEEcCccCC-HHHHHHHHHH
Confidence 35677788887 999999999987665 4444444443
No 193
>PLN02591 tryptophan synthase
Probab=57.53 E-value=31 Score=32.26 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=39.5
Q ss_pred HH-HHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 42 WR-NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 42 ~~-gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
|+ |+.+-+..+++.|+++|.++.+ ..++..++++.|+++||..|+=+.++
T Consensus 91 ~~~G~~~F~~~~~~aGv~GviipDL----------------------P~ee~~~~~~~~~~~gl~~I~lv~Pt 141 (250)
T PLN02591 91 LKRGIDKFMATIKEAGVHGLVVPDL----------------------PLEETEALRAEAAKNGIELVLLTTPT 141 (250)
T ss_pred HHhHHHHHHHHHHHcCCCEEEeCCC----------------------CHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 55 7788888888888888887631 24889999999999999999844354
No 194
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=57.49 E-value=19 Score=35.48 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=43.8
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEEccccCcC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~-VilD~V~NH~~~ 117 (413)
.++|..|+++|++.|.+.. . ..+..-+-.++ +-.+.++..+.++.|++.|+. |-+|+.++..+.
T Consensus 103 ~e~l~~lk~~G~nrisiGv-Q------S~~d~vL~~l~-R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgq 167 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGV-Q------SMNNNILKQLN-RTHTIQDSKEAINLLHKNGIYNISCDFLYCLPIL 167 (353)
T ss_pred HHHHHHHHHcCCCEEEEec-c------cCCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCC
Confidence 3677777777887776643 1 11222222333 345788999999999999997 889999986543
No 195
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=57.41 E-value=38 Score=33.60 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=42.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
|++.+.+.+.. .+.+|.+.|++... |..+ =+.+.+++|++-|+++|+-||+|-|.-..+.
T Consensus 164 d~~~l~~~l~~----~~~avivep~~~~~---G~~~----------~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 223 (389)
T PRK01278 164 DIEALKAAITP----NTAAILIEPIQGEG---GIRP----------APDEFLKGLRQLCDENGLLLIFDEVQCGMGR 223 (389)
T ss_pred CHHHHHHhhCC----CeEEEEEecccCCC---CCcC----------CCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 56666665532 57799999874331 2111 1468999999999999999999999765443
No 196
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=57.23 E-value=60 Score=33.18 Aligned_cols=70 Identities=10% Similarity=0.221 Sum_probs=43.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcC----C--CCCCC---C---CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLP----P--ATHSF---A---PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~----P--i~~~~---~---~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
-.+.|...|+-.+--..|.++-. + +++++ . ...|++..-| |.+|.+++|+=|.-|||||+.
T Consensus 196 pv~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~~vY-------T~eDv~evV~yarlRGIRVlp 268 (542)
T KOG2499|consen 196 PVKVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPRHVY-------TREDVSEVVEYARLRGIRVLP 268 (542)
T ss_pred cHHHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhhhcCCCCcceee-------cHHHHHHHHHHHHhccceeee
Confidence 36667777776665555555542 1 11111 1 1223332212 589999999999999999997
Q ss_pred EE-ccccCcC
Q 015125 109 DI-VINHRVG 117 (413)
Q Consensus 109 D~-V~NH~~~ 117 (413)
.+ ++.|++.
T Consensus 269 EfD~PgHt~s 278 (542)
T KOG2499|consen 269 EFDTPGHTGS 278 (542)
T ss_pred cccCCccccc
Confidence 77 5677776
No 197
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=57.09 E-value=19 Score=36.78 Aligned_cols=33 Identities=6% Similarity=0.084 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEEccccCcC
Q 015125 85 SYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (413)
Q Consensus 85 ~~Gt~~~~~~Lv~~~h~~Gi~-VilD~V~NH~~~ 117 (413)
+-.+.++..+.++.+++.|++ |-+|+.+...+.
T Consensus 183 R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgq 216 (453)
T PRK13347 183 RIQPEEMVARAVELLRAAGFESINFDLIYGLPHQ 216 (453)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCC
Confidence 346788999999999999997 889998886444
No 198
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=57.04 E-value=18 Score=37.76 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=46.2
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
.++|+.|+++|++.|+|..= ..++ .-+..++ +--+.++..+.++.+++.|++|.+|+.++--+
T Consensus 206 ~e~L~~L~~~G~~rVslGVQ------S~~d-~VL~~in-Rght~~~v~~Ai~~lr~~G~~v~~~LM~GLPg 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQ------TIYN-DILERTK-RGHTVRDVVEATRLLRDAGLKVVYHIMPGLPG 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECc------cCCH-HHHHHhC-CCCCHHHHHHHHHHHHHcCCeEEEEeecCCCC
Confidence 47899999999999998761 1111 1122333 33468889999999999999999999998644
No 199
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=56.69 E-value=21 Score=33.20 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=37.0
Q ss_pred HHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 44 gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
|+..-++.+++.|+++|-++-. ..+++.++++.|+++||+.++=+.++
T Consensus 92 G~~~fi~~~~~aG~~giiipDl----------------------~~ee~~~~~~~~~~~g~~~i~~i~P~ 139 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPDL----------------------PPEEAEEFREAAKEYGLDLIFLVAPT 139 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECCC----------------------CHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 3567777888888888877521 12589999999999999999877655
No 200
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=56.45 E-value=79 Score=29.71 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhCC
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGARP 212 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~~ 212 (413)
.+++.+.++... +.|+|.+++ |++..+.|.-..++++.++.
T Consensus 142 ~~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~ 183 (268)
T cd07940 142 LDFLIEVVEAAI-EAGATTINIPDTVGYLTPEEFGELIKKLKE 183 (268)
T ss_pred HHHHHHHHHHHH-HcCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 357788888886 899999987 77788888888887777653
No 201
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=56.17 E-value=67 Score=33.19 Aligned_cols=65 Identities=11% Similarity=0.228 Sum_probs=43.3
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
+.|..-.+-++-+|+||+++-=++=-...--+.|-.. .+ .-...+=..+||++|+++||+.|+=+
T Consensus 70 d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~----~~--N~~gl~~Y~~lId~L~~~GI~P~VTL 134 (478)
T PRK09593 70 DMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDEL----EP--NEAGLQFYEDIFKECHKYGIEPLVTI 134 (478)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCC----CC--CHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 4788899999999999999876653221111111100 01 11124558899999999999999876
No 202
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=55.49 E-value=76 Score=31.06 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 172 KDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
+++.+.++... ++|+|.+++ |++..+.|+-..++...++
T Consensus 143 e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~ 182 (333)
T TIGR03217 143 EKLAEQAKLME-SYGADCVYIVDSAGAMLPDDVRDRVRALK 182 (333)
T ss_pred HHHHHHHHHHH-hcCCCEEEEccCCCCCCHHHHHHHHHHHH
Confidence 57888888775 899999887 8888888888887777765
No 203
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=55.43 E-value=33 Score=26.69 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=27.0
Q ss_pred EEecCCEEEEEE---CCEEEEEEcC-CCCC--------C-----CCCCcEEeeeCCceEE
Q 015125 368 LEAQSNLYSAII---GDKVCMKIGD-GSWC--------P-----AGKEWTLATSGHKYAV 410 (413)
Q Consensus 368 ~~~~~~~~~~~r---~~~~lv~lnn-~~~~--------~-----~~~~~~~~~s~~~~~~ 410 (413)
++.+++.+|++| +..+|++++| ++.. + ++..++++|+...|.+
T Consensus 2 iy~d~~~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g~~v~dVlsc~~~tv 61 (91)
T PF09260_consen 2 IYSDDSTIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAGTEVTDVLSCTSYTV 61 (91)
T ss_dssp EEEETTEEEEEESSTTT-EEEEEE-S-T-T---EEEEESS----TT-EEEETTTTEEEE-
T ss_pred eEECCcEEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCCCEEEEEecCCEEEE
Confidence 567889999999 3578889998 3311 1 3467777777776665
No 204
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=55.41 E-value=32 Score=31.81 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=16.7
Q ss_pred HHHhhhhhHHHcCCCEEEcCC
Q 015125 44 NLERKVPDISKSGFTSVWLPP 64 (413)
Q Consensus 44 gi~~~L~yLk~lGv~~I~L~P 64 (413)
.+.+.++-++++|+++|.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~ 35 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLF 35 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecC
Confidence 366677778899999999853
No 205
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=55.16 E-value=23 Score=34.84 Aligned_cols=63 Identities=10% Similarity=0.161 Sum_probs=42.3
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEEccccCc
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRV 116 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~-VilD~V~NH~~ 116 (413)
.++|..|+++|||.|-|.. ...+..-...+ -+-.+.++..+.++.+++.|+. |-+|++++-.+
T Consensus 98 ~e~l~~l~~~GvnRiSiGv-------QS~~~~~L~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGV-------QSFNEDKLKFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 3667777777777776543 11122222334 3445788999999999999997 66999998644
No 206
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=54.99 E-value=34 Score=32.70 Aligned_cols=134 Identities=14% Similarity=0.165 Sum_probs=76.2
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCCCC---HHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGS---EHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~Gt---~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
=+.+.+...-+|+-|+|++-+== +.. +.-.|...| .+....++ --|.+-+|++|++.||.+|.-+|.-.-..
T Consensus 76 kk~~de~fk~ikdn~~Na~ViD~--Kdd~G~lty~s~d--~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD~~ 151 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFVIDV--KDDYGELTYPSSD--EINKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKDTI 151 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEEEEe--cCCCccEeccccc--hhhhhhhccccccccHHHHHHHHhcCeEEEEEEEEeeeee
Confidence 44555666777888888775411 000 122344443 33333333 34688899999999999999998653222
Q ss_pred CCCCCCCcccccCCCCCCCCCCCeeccCC--CCCCCcCCCCC----CCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEe
Q 015125 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTG--GLGNGSTGDNF----HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFR 191 (413)
Q Consensus 118 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR 191 (413)
- ..|++....-+.+ +|.. ..+..+ ....=.+--++.+++|-+.+.+.-. +||+|-+.
T Consensus 152 l---------------~~~n~fk~av~~~gKpw~~-~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~-~fGfdEiQ 214 (400)
T COG1306 152 L---------------AKENPFKIAVYKDGKPWKA-FTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAA-KFGFDEIQ 214 (400)
T ss_pred E---------------EeecCceEEEEcCCCcchh-hhcccccccccceeeecccchhhhhhhHHHHHHHH-HcCcccee
Confidence 1 1122222221211 1110 011000 0111245557999999999999997 99999999
Q ss_pred ecccC
Q 015125 192 FDFAR 196 (413)
Q Consensus 192 ~D~a~ 196 (413)
+|-+.
T Consensus 215 FDYIR 219 (400)
T COG1306 215 FDYIR 219 (400)
T ss_pred eeEEE
Confidence 98653
No 207
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=54.93 E-value=90 Score=30.42 Aligned_cols=70 Identities=10% Similarity=-0.089 Sum_probs=42.6
Q ss_pred HHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCC--CcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 43 RNLERKVPDISKSGFTSVWLPPATHSFAPEGY--LPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 43 ~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY--~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
+..++.....++=|+..|..-....++...+| .+. +.. =.-.+.|++|++++|++|-++++=+ +|.|...
T Consensus 33 ~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~----~~~-d~~~~~~~~l~~~vh~~G~~~~~QL--~H~G~~~ 104 (336)
T cd02932 33 DWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLG----LWN-DEQIEALKRIVDFIHSQGAKIGIQL--AHAGRKA 104 (336)
T ss_pred HHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCcee----ecC-HHHHHHHHHHHHHHHhcCCcEEEEc--cCCCcCC
Confidence 34444444455567888776655444332221 111 110 0125789999999999999998876 7877754
No 208
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=54.72 E-value=64 Score=33.27 Aligned_cols=67 Identities=12% Similarity=0.242 Sum_probs=43.5
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
+.|..-.+-+.-+|+||+++-=++=-...--+.|... .+ .--..+=.++||++|.++||+-|+=+ .|
T Consensus 64 D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~----~~--N~~gl~~Y~~lid~L~~~GI~P~VTL--~H 130 (476)
T PRK09589 64 DFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDEL----EP--NEEGLQFYDDLFDECLKQGIEPVVTL--SH 130 (476)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCC----CC--CHHHHHHHHHHHHHHHHcCCEEEEEe--cC
Confidence 3678888999999999999876542111111111100 01 11124458899999999999999866 55
No 209
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=54.61 E-value=41 Score=31.89 Aligned_cols=29 Identities=14% Similarity=0.014 Sum_probs=25.0
Q ss_pred CCCCc--cHHHHHhhhhhHHHcCCCEEEcCC
Q 015125 36 SCKHD--WWRNLERKVPDISKSGFTSVWLPP 64 (413)
Q Consensus 36 ~~~~g--~~~gi~~~L~yLk~lGv~~I~L~P 64 (413)
|+++| |++++.+.++++.+.|+++|.++-
T Consensus 12 f~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~G 42 (284)
T cd00950 12 FKDDGSVDFDALERLIEFQIENGTDGLVVCG 42 (284)
T ss_pred cCCCCCcCHHHHHHHHHHHHHcCCCEEEECC
Confidence 44555 899999999999999999999874
No 210
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.45 E-value=26 Score=33.94 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=38.6
Q ss_pred hhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 48 KVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 48 ~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
.....++=|+.-|..-...-++...+|. .. -.+... ...+.+|++++++|++|-++++=+ +|.+..+
T Consensus 38 ~y~~ra~gg~glii~e~~~v~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~ 104 (327)
T cd02803 38 YYEERAKGGVGLIITEAAYVDPEGKGYP-GQ-LGIYDD-EQIPGLRKLTEAVHAHGAKIFAQL--AHAGRQA 104 (327)
T ss_pred HHHHHhCcCCcEEEECcEEEcCcccCCC-CC-cCcCCH-HHHHHHHHHHHHHHhCCCHhhHHh--hCCCcCC
Confidence 3333444567777665544443322211 10 001000 135789999999999999988654 8888754
No 211
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=54.34 E-value=23 Score=36.19 Aligned_cols=63 Identities=10% Similarity=0.196 Sum_probs=39.3
Q ss_pred hhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEEccccCcC
Q 015125 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (413)
Q Consensus 47 ~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~-VilD~V~NH~~~ 117 (413)
+.|..|+++|++.|.|.. ...+..-+-.++ +-.+.++..+.++.+++.|++ |-+|+.++..+.
T Consensus 152 e~l~~lk~~G~~risiGv-------qS~~~~~l~~l~-r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 152 DVIDALRDEGFNRLSFGV-------QDFNKEVQQAVN-RIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred HHHHHHHHcCCCEEEEcC-------CCCCHHHHHHhC-CCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCC
Confidence 445555555555555543 111111122333 336788999999999999997 779998886554
No 212
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=54.34 E-value=26 Score=35.85 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=41.2
Q ss_pred hhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEEccccCcC
Q 015125 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV-RAMADIVINHRVG 117 (413)
Q Consensus 47 ~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi-~VilD~V~NH~~~ 117 (413)
++|..|+++|++.|.|.. ...+..-+-.++ +..+.++..+.++.+++.|+ .|-+|+.++..+.
T Consensus 152 e~l~~l~~aG~~risiGv-------qS~~~~~L~~l~-r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (453)
T PRK09249 152 EMLDALRELGFNRLSLGV-------QDFDPEVQKAVN-RIQPFEFTFALVEAARELGFTSINIDLIYGLPKQ 215 (453)
T ss_pred HHHHHHHHcCCCEEEECC-------CCCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCC
Confidence 555566666666665543 111112222333 34678899999999999999 8999999886554
No 213
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=53.50 E-value=28 Score=35.76 Aligned_cols=27 Identities=0% Similarity=0.177 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
+.++..+.++.|+++||.|.+++++..
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGl 347 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGL 347 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeC
Confidence 578899999999999999999999875
No 214
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=53.29 E-value=1.8e+02 Score=28.93 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
.+.+++|++++|++|-++++=+ +|.+...
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL--~H~G~~~ 110 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIEL--WHGGAHA 110 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEec--ccCCCCC
Confidence 5789999999999999999887 5888744
No 215
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=53.10 E-value=68 Score=29.72 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
.+++.+.++.+. +.|+|.+++ |.+..+.++-+.++++.++
T Consensus 145 ~~~l~~~~~~~~-~~g~~~i~l~Dt~G~~~P~~v~~li~~l~ 185 (265)
T cd03174 145 PEYVLEVAKALE-EAGADEISLKDTVGLATPEEVAELVKALR 185 (265)
T ss_pred HHHHHHHHHHHH-HcCCCEEEechhcCCcCHHHHHHHHHHHH
Confidence 456888888886 999999998 7788888888877777765
No 216
>KOG2730 consensus Methylase [General function prediction only]
Probab=53.03 E-value=13 Score=33.95 Aligned_cols=46 Identities=13% Similarity=0.016 Sum_probs=36.9
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCC
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSY 86 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~ 86 (413)
|||..+...|..-|+. ++.|.++|+.-.+++.+|++.|+....+..
T Consensus 150 GD~ld~~~~lq~~K~~-~~~vf~sppwggp~y~~~~~~DL~~~~~p~ 195 (263)
T KOG2730|consen 150 GDFLDLASKLKADKIK-YDCVFLSPPWGGPSYLRADVYDLETHLKPM 195 (263)
T ss_pred chHHHHHHHHhhhhhe-eeeeecCCCCCCcchhhhhhhhhhhhcchh
Confidence 5899999999999999 999999999888877777776655544333
No 217
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=52.65 E-value=65 Score=31.00 Aligned_cols=103 Identities=9% Similarity=0.083 Sum_probs=63.5
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc--CCEEEEEEccccCcCCC
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH--KVRAMADIVINHRVGTT 119 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~--Gi~VilD~V~NH~~~~~ 119 (413)
.+.+.+.+..+.++||.+|-|-|+-+.....|=. +.+| ..-+++-|+++++. .|-||-|+.+..-...
T Consensus 50 ~d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~-----A~~~----~g~v~~air~iK~~~p~l~vi~DvcLc~YT~h- 119 (314)
T cd00384 50 VDSLVEEAEELADLGIRAVILFGIPEHKDEIGSE-----AYDP----DGIVQRAIRAIKEAVPELVVITDVCLCEYTDH- 119 (314)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCccc-----ccCC----CChHHHHHHHHHHhCCCcEEEEeeeccCCCCC-
Confidence 9999999999999999999999984332222211 1111 12244555555543 7999999988753331
Q ss_pred CCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeE
Q 015125 120 QGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDF 190 (413)
Q Consensus 120 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGf 190 (413)
.+| .. +.. =...|.+..+.+.+...-.. +-|+|-+
T Consensus 120 ------------------GHc--Gi------------l~~---~~idND~Tl~~L~k~Als~A-~AGADiV 154 (314)
T cd00384 120 ------------------GHC--GI------------LKD---DYVDNDATLELLAKIAVSHA-EAGADIV 154 (314)
T ss_pred ------------------Ccc--ee------------ccC---CcCccHHHHHHHHHHHHHHH-HcCCCee
Confidence 111 00 000 02347777777877777665 8888755
No 218
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=52.61 E-value=1e+02 Score=28.71 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhCC
Q 015125 172 KDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGARP 212 (413)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~~ 212 (413)
+++.+.++... +.|+|.+++ |++..+.|+-+.+++..++.
T Consensus 139 ~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~ 179 (259)
T cd07939 139 DFLIEFAEVAQ-EAGADRLRFADTVGILDPFTTYELIRRLRA 179 (259)
T ss_pred HHHHHHHHHHH-HCCCCEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 57888888886 899999987 77788888888888777653
No 219
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=52.14 E-value=1.7e+02 Score=28.76 Aligned_cols=74 Identities=8% Similarity=-0.041 Sum_probs=46.4
Q ss_pred CCcc-HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCC---HHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 38 KHDW-WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS---EHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 38 ~~g~-~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt---~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
++|. =+.+++.....++=|+..|..-.+..++...++ +.. +..-+ .+.+++|++++|++|-++++ -++
T Consensus 27 ~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~-~~~-----~~l~~d~~i~~~~~l~~~vh~~g~~~~~--Ql~ 98 (343)
T cd04734 27 EDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPA-FGN-----LNASDDEIIPGFRRLAEAVHAHGAVIMI--QLT 98 (343)
T ss_pred cCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCC-CCc-----cccCCHHHHHHHHHHHHHHHhcCCeEEE--ecc
Confidence 4553 234555555666667888876655544432222 111 12222 46899999999999999998 458
Q ss_pred cCcCCC
Q 015125 114 HRVGTT 119 (413)
Q Consensus 114 H~~~~~ 119 (413)
|.+..+
T Consensus 99 H~G~~~ 104 (343)
T cd04734 99 HLGRRG 104 (343)
T ss_pred CCCcCc
Confidence 877654
No 220
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=51.79 E-value=22 Score=33.99 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
+.++++++++.||++|+.||+|-+...
T Consensus 150 ~~~~l~~l~~~~~~~~~~~ivD~a~~~ 176 (350)
T cd00609 150 SEEELEELAELAKKHGILIISDEAYAE 176 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEEEecchhh
Confidence 468899999999999999999998653
No 221
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=51.78 E-value=69 Score=34.45 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=51.5
Q ss_pred cccCCceeEE-----EeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHH
Q 015125 20 VIRNGREILF-----QGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLL 92 (413)
Q Consensus 20 ~~~~~~~~i~-----~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~ 92 (413)
-+.+|+.+++ |-|.|. . ..+.+.|.-+|++|+|+|-+.++.=+- ...| ..+|+..+ .
T Consensus 8 ~~~dg~~~~l~gG~y~p~~~p-----~-~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG---------~fdf~~~D-~ 71 (673)
T COG1874 8 FIRDGRRILLYGGDYYPERWP-----R-ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEG---------KFDFTWLD-E 71 (673)
T ss_pred eeeCCceeEEeccccChHHCC-----H-HHHHHHHHHHHHhCCCeeEeeeEEeeccCcccc---------ccCcccch-H
Confidence 3445556654 457777 3 888899999999999999997764221 0111 02233333 4
Q ss_pred HHHHHHHHHcCCEEEEEEcc
Q 015125 93 KALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 93 ~~Lv~~~h~~Gi~VilD~V~ 112 (413)
. +++.|++.|+.|||==.+
T Consensus 72 ~-~l~~a~~~Gl~vil~t~P 90 (673)
T COG1874 72 I-FLERAYKAGLYVILRTGP 90 (673)
T ss_pred H-HHHHHHhcCceEEEecCC
Confidence 4 899999999999997654
No 222
>PLN02389 biotin synthase
Probab=51.67 E-value=41 Score=33.61 Aligned_cols=72 Identities=10% Similarity=0.025 Sum_probs=44.3
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCC-CCCCC--------C----CCCCC--cccCCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPP-ATHSF--------A----PEGYL--PQNLYSLNSSYGSEHLLKALLHKMKQHKVR 105 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~P-i~~~~--------~----~~gY~--~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~ 105 (413)
.++.+.+.+..||+.|+. |.++. +.... + .+..+ +..|-.+-+. .+.++-.+.++.||+.||+
T Consensus 151 ~~e~i~eiir~ik~~~l~-i~~s~G~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~-~s~e~rl~ti~~a~~~Gi~ 228 (379)
T PLN02389 151 NFNQILEYVKEIRGMGME-VCCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITT-RSYDDRLETLEAVREAGIS 228 (379)
T ss_pred HHHHHHHHHHHHhcCCcE-EEECCCCCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCC-CCHHHHHHHHHHHHHcCCe
Confidence 577777777777776654 22211 11000 1 12222 2223334332 3788899999999999999
Q ss_pred EEEEEcccc
Q 015125 106 AMADIVINH 114 (413)
Q Consensus 106 VilD~V~NH 114 (413)
|-.=+++.|
T Consensus 229 v~sg~IiGl 237 (379)
T PLN02389 229 VCSGGIIGL 237 (379)
T ss_pred EeEEEEECC
Confidence 999999988
No 223
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=51.60 E-value=18 Score=35.78 Aligned_cols=18 Identities=6% Similarity=0.054 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCEEEE
Q 015125 91 LLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 91 ~~~~Lv~~~h~~Gi~Vil 108 (413)
....||++||++|++|+.
T Consensus 279 ~~~~~v~~Ah~~GL~V~~ 296 (356)
T cd08560 279 VPSEYAKAAKAAGLDIIT 296 (356)
T ss_pred CCHHHHHHHHHcCCEEEE
Confidence 357899999999999975
No 224
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=51.47 E-value=1.9e+02 Score=28.88 Aligned_cols=28 Identities=4% Similarity=0.030 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccC-cCC
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHR-VGT 118 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~-~~~ 118 (413)
.+.||+|++++|++|-++++=+ +|. +..
T Consensus 82 i~~~k~l~davh~~G~~i~~QL--~H~~Gr~ 110 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL--TAGFGRV 110 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc--cCcCCCc
Confidence 4679999999999999999655 786 553
No 225
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=50.52 E-value=1.2e+02 Score=29.42 Aligned_cols=101 Identities=14% Similarity=0.033 Sum_probs=57.8
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCC
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQG 121 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~ 121 (413)
++.=.+.+..+++.|.|+=.--|= ...+|.-.=.+.|.-+ ..++|++|+++|++.||+.+.=+-+-
T Consensus 14 ~e~R~~l~~f~~~~kmN~YiYAPK--dDpyhr~~Wre~Yp~~----el~~l~~L~~~a~~~~V~Fv~aisPg-------- 79 (306)
T PF07555_consen 14 HEDRLDLIRFLGRYKMNTYIYAPK--DDPYHRSKWREPYPEE----ELAELKELADAAKANGVDFVYAISPG-------- 79 (306)
T ss_dssp HHHHHHHHHHHHHTT--EEEE--T--T-TTTTTTTTS---HH----HHHHHHHHHHHHHHTT-EEEEEEBGT--------
T ss_pred HHHHHHHHHHHHHcCCceEEECCC--CChHHHhhhcccCCHH----HHHHHHHHHHHHHHcCCEEEEEECcc--------
Confidence 888888899999999998776551 1112221111111111 35789999999999999988655211
Q ss_pred CCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEee--cccC
Q 015125 122 HGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRF--DFAR 196 (413)
Q Consensus 122 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~--D~a~ 196 (413)
.++++.+++..+.|++=+..+. +.||+-|-+ |-+.
T Consensus 80 ---------------------------------------~~~~~s~~~d~~~L~~K~~ql~-~lGvr~FailfDDi~ 116 (306)
T PF07555_consen 80 ---------------------------------------LDICYSSEEDFEALKAKFDQLY-DLGVRSFAILFDDID 116 (306)
T ss_dssp ---------------------------------------TT--TSHHHHHHHHHHHHHHHH-CTT--EEEEE-TS-S
T ss_pred ---------------------------------------cccccCcHHHHHHHHHHHHHHH-hcCCCEEEEeecCCC
Confidence 1223345666777887777776 899998754 4444
No 226
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=50.44 E-value=75 Score=30.64 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=55.1
Q ss_pred ccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 015125 19 AVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHK 98 (413)
Q Consensus 19 ~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~ 98 (413)
|.+...+++|+ +| .. +.+.+++.|+.|+++|++.|-+.+-+.. +..+ ..| .+|=++++|..+-+.
T Consensus 205 pgi~~~TgiIV-Gl-GE-----Teee~~etl~~Lrelg~d~v~igqYl~p-~~~~------~~v-~~~~~p~~f~~~~~~ 269 (302)
T TIGR00510 205 PNLPTKSGIMV-GL-GE-----TNEEIKQTLKDLRDHGVTMVTLGQYLRP-SRRH------LPV-KRYVSPEEFDYYRSV 269 (302)
T ss_pred CCCeecceEEE-EC-CC-----CHHHHHHHHHHHHhcCCCEEEeecccCC-CCCC------Ccc-ccCCCHHHHHHHHHH
Confidence 34444545555 44 66 7999999999999999999988875543 2222 233 366688999999999
Q ss_pred HHHcCCEEEEE
Q 015125 99 MKQHKVRAMAD 109 (413)
Q Consensus 99 ~h~~Gi~VilD 109 (413)
|-+.|.+-|.-
T Consensus 270 a~~~gf~~v~~ 280 (302)
T TIGR00510 270 ALEMGFLHAAC 280 (302)
T ss_pred HHHcCChheEe
Confidence 99999875543
No 227
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=49.74 E-value=18 Score=35.69 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE
Q 015125 88 SEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
|+++|++|.+-|.++|++||-|=
T Consensus 176 t~eeL~~i~elc~kh~v~VISDE 198 (388)
T COG1168 176 TKEELRKIAELCLRHGVRVISDE 198 (388)
T ss_pred cHHHHHHHHHHHHHcCCEEEeec
Confidence 38999999999999999999764
No 228
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=49.53 E-value=34 Score=32.83 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc-------HHHHHHHHHhhC
Q 015125 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-------AKYVKEYIEGAR 211 (413)
Q Consensus 166 ~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~-------~~~~~~~~~~~~ 211 (413)
.++..|+.+++.+..+++++|+||+-+|-=.... ..|++++.++++
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~ 140 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVK 140 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHH
Confidence 4688899999999888899999999999543322 236777776654
No 229
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=48.94 E-value=32 Score=27.91 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=37.8
Q ss_pred hHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 51 DISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 51 yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
.|..+|++++.+.|...... .......|..=+=+.=|...+..++++.||++|++||.
T Consensus 21 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 21 TLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 45678999998866422111 11122233222226668889999999999999999886
No 230
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=48.92 E-value=45 Score=29.11 Aligned_cols=60 Identities=7% Similarity=-0.139 Sum_probs=41.0
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHH---HcCCEEEEEEccccC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK---QHKVRAMADIVINHR 115 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h---~~Gi~VilD~V~NH~ 115 (413)
..+...+...+.+++|+++|.+.|++-. ..+ ++.+.+.+.++++. +.++-|++...+.++
T Consensus 63 ~~~~~~~~a~~a~~~Gad~i~v~~~~~~------------~~~---~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 63 TTEVKVAEVEEAIDLGADEIDVVINIGS------------LKE---GDWEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeccHHH------------HhC---CCHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 3889999999999999999999875421 110 13444444444444 359999998876654
No 231
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=48.78 E-value=37 Score=31.95 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=37.2
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
+.+.++-++++|+++|+|.+-- .+. .+.+.--+.++++++.+.+.++||+|..
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~----~~~-------~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDE----SDE-------RLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCc----ccc-------chhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 5678888999999999996421 111 0111112577899999999999999863
No 232
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=48.66 E-value=49 Score=32.61 Aligned_cols=52 Identities=8% Similarity=0.070 Sum_probs=34.2
Q ss_pred hhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 48 KVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 48 ~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
++..+-+-|+|+|++.=- +. +..+.. . .| +.++|++.|+.||++|.++++=+
T Consensus 18 ~l~~ai~~GADaVY~G~~-~~-~~R~~a-~-------nf-s~~~l~e~i~~ah~~gkk~~V~~ 69 (347)
T COG0826 18 DLKAAIAAGADAVYIGEK-EF-GLRRRA-L-------NF-SVEDLAEAVELAHSAGKKVYVAV 69 (347)
T ss_pred HHHHHHHcCCCEEEeCCc-cc-cccccc-c-------cC-CHHHHHHHHHHHHHcCCeEEEEe
Confidence 444445568999998743 11 111212 1 12 46779999999999999998654
No 233
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=48.41 E-value=54 Score=32.71 Aligned_cols=61 Identities=16% Similarity=0.068 Sum_probs=42.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
|++.+.+.+. + .+-+|.+-|++... |. ...+.+.+++|++-|+++|+-+|+|=|.-+.+..
T Consensus 173 d~~~l~~~l~---~-~~aaiiiep~~~~g---g~----------~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~ 233 (403)
T PRK05093 173 DLAAVKAVID---D-HTCAVVVEPIQGEG---GV----------IPATPEFLQGLRELCDQHNALLIFDEVQTGMGRT 233 (403)
T ss_pred CHHHHHHHhc---C-CeEEEEEecccCCC---CC----------ccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCC
Confidence 5666666553 1 36678888765442 10 1125789999999999999999999997766543
No 234
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=48.22 E-value=53 Score=30.81 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=33.7
Q ss_pred HHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 44 gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
|+.+-+..+++.|+++|.++.. ..++..++++.|+++|++.++=+.++
T Consensus 103 G~e~f~~~~~~aGvdgviipDl----------------------p~ee~~~~~~~~~~~gl~~i~lv~P~ 150 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADL----------------------PLEESGDLVEAAKKHGVKPIFLVAPN 150 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCC----------------------ChHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5555666666666666665421 24778999999999999998655554
No 235
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=48.18 E-value=34 Score=33.97 Aligned_cols=33 Identities=9% Similarity=0.004 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEEccccCcC
Q 015125 85 SYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (413)
Q Consensus 85 ~~Gt~~~~~~Lv~~~h~~Gi~-VilD~V~NH~~~ 117 (413)
+-.+.++..+.++.+++.|+. |-+|+.+...+.
T Consensus 131 r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 131 RTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 345688999999999999998 679999886554
No 236
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=48.02 E-value=1e+02 Score=29.29 Aligned_cols=74 Identities=9% Similarity=0.139 Sum_probs=50.7
Q ss_pred CceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCC-CCHHHHHHHHHHHHHc
Q 015125 24 GREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSY-GSEHLLKALLHKMKQH 102 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~-Gt~~~~~~Lv~~~h~~ 102 (413)
+.++|++++.-+ -+...+....+++.|+++|.|.= -++...+ -+..+ ++++.+.++++++++.
T Consensus 89 ~~p~ivsi~g~~------~~~~~~~a~~~~~~G~d~iElN~--~cP~~~~--------~g~~~~~~~~~~~eiv~~vr~~ 152 (296)
T cd04740 89 GTPVIASIAGST------VEEFVEVAEKLADAGADAIELNI--SCPNVKG--------GGMAFGTDPEAVAEIVKAVKKA 152 (296)
T ss_pred CCcEEEEEecCC------HHHHHHHHHHHHHcCCCEEEEEC--CCCCCCC--------CcccccCCHHHHHHHHHHHHhc
Confidence 457899998744 67777788888999999999961 1111111 12223 4567788889998887
Q ss_pred -CCEEEEEEccc
Q 015125 103 -KVRAMADIVIN 113 (413)
Q Consensus 103 -Gi~VilD~V~N 113 (413)
++-|++-+-++
T Consensus 153 ~~~Pv~vKl~~~ 164 (296)
T cd04740 153 TDVPVIVKLTPN 164 (296)
T ss_pred cCCCEEEEeCCC
Confidence 78888776443
No 237
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=47.82 E-value=49 Score=30.73 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=34.2
Q ss_pred HHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 44 gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
+..+-++.+++.|+++|-+. | -.+-+.++.+++++.||++||++++=+-++
T Consensus 89 ~~~~~i~~~~~~Gadgvii~--------------d-----lp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~ 139 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFP--------------D-----LLIDYPDDLEKYVEIIKNKGLKPVFFTSPK 139 (244)
T ss_pred CHHHHHHHHHHcCCCEEEEC--------------C-----CCCCcHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 44555666666677666652 1 111134678999999999999999966553
No 238
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=47.41 E-value=64 Score=30.61 Aligned_cols=51 Identities=14% Similarity=0.093 Sum_probs=35.4
Q ss_pred CCCCc--cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 36 SCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 36 ~~~~g--~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
|+++| |++++...++++-+.||++|.++- .-| .++.+ |.+|-+++++.+-+
T Consensus 10 f~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~G------stG----E~~~L-----s~~Er~~~~~~~~~ 62 (285)
T TIGR00674 10 FKEDGSVDFAALEKLIDFQIENGTDAIVVVG------TTG----ESPTL-----SHEEHKKVIEFVVD 62 (285)
T ss_pred cCCCCCcCHHHHHHHHHHHHHcCCCEEEECc------cCc----ccccC-----CHHHHHHHHHHHHH
Confidence 34555 899999999999999999999753 111 22333 46666666665554
No 239
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=47.39 E-value=66 Score=33.52 Aligned_cols=156 Identities=10% Similarity=-0.058 Sum_probs=81.2
Q ss_pred cccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCC-CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHH
Q 015125 18 GAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPP-ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALL 96 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~P-i~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv 96 (413)
.|..++.+++..--|.-.+-+ =+.+.|++.+.-.|+.||-...|== .+....+.-=+.-|++.-..+|++ .+..||
T Consensus 285 ~~~~~kprPi~~nsWea~Yfd-~t~e~ile~vk~akk~gvE~FvlDDGwfg~rndd~~slGDWlv~seKfPs--giE~li 361 (687)
T COG3345 285 RPRVKKPRPIGWNSWEAYYFD-FTEEEILENVKEAKKFGVELFVLDDGWFGGRNDDLKSLGDWLVNSEKFPS--GIEELI 361 (687)
T ss_pred ccccCCCCcceeeceeeeeec-CCHHHHHHHHHHHhhcCeEEEEEccccccccCcchhhhhceecchhhccc--cHHHHH
Confidence 467777777765444432211 2588999999999999976665522 111111111223444444445543 467888
Q ss_pred HHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHH
Q 015125 97 HKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIA 176 (413)
Q Consensus 97 ~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~ 176 (413)
++.|++|+.-=+=+-+-=++.++..+.. ++||.-. .+++.- .....+--++..+|.|..++.+
T Consensus 362 ~~I~e~Gl~fGIWlePemvs~dSdlfrq--------HPDWvvk-----~~G~p~----~~~Rnqyvl~~s~p~vv~~l~~ 424 (687)
T COG3345 362 EAIAENGLIFGIWLEPEMVSEDSDLFRQ--------HPDWVVK-----VNGYPL----MAGRNQYVLWLSNPIVVLDLSE 424 (687)
T ss_pred HHHHHcCCccceeecchhcccchHHHhh--------CCCeEEe-----cCCccc----cccccchhhhccChHHHHHhhh
Confidence 9999999876555444444444332222 2344321 011100 0012233467778888777766
Q ss_pred HHHHHHhhcCCCeEeec
Q 015125 177 WLRWLRNTVGFQDFRFD 193 (413)
Q Consensus 177 ~~~~w~~~~gvDGfR~D 193 (413)
.+.+....--||=+|-|
T Consensus 425 ~l~qll~~~~v~ylkwd 441 (687)
T COG3345 425 DLVQLLLFHLVSYLKWD 441 (687)
T ss_pred HHHHHHHhhhHHHHHHH
Confidence 55443323333333333
No 240
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=47.26 E-value=27 Score=35.79 Aligned_cols=94 Identities=9% Similarity=0.160 Sum_probs=60.6
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCC--CCC-----HHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS--YGS-----EHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~--~Gt-----~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
..+..-.+-++-+|+||+++.=++--. -.|-|. -|. .+=.++||++|.++||+.|+-+
T Consensus 55 d~y~~y~eDi~l~~~lg~~~yRfsi~W-------------~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL-- 119 (455)
T PF00232_consen 55 DHYHRYKEDIALMKELGVNAYRFSISW-------------SRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL-- 119 (455)
T ss_dssp GHHHHHHHHHHHHHHHT-SEEEEE--H-------------HHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--
T ss_pred cchhhhhHHHHHHHhhccceeeeecch-------------hheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--
Confidence 468888999999999999998765321 122222 122 4558999999999999999887
Q ss_pred ccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcC
Q 015125 113 NHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 186 (413)
Q Consensus 113 NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~g 186 (413)
+|-.- | .++. . .++ +.|+++.+.+.++++..++++|
T Consensus 120 ~H~~~--P------~~l~------------~-~gg-----------------w~~~~~~~~F~~Ya~~~~~~~g 155 (455)
T PF00232_consen 120 YHFDL--P------LWLE------------D-YGG-----------------WLNRETVDWFARYAEFVFERFG 155 (455)
T ss_dssp ESS----B------HHHH------------H-HTG-----------------GGSTHHHHHHHHHHHHHHHHHT
T ss_pred eeccc--c------ccee------------e-ccc-----------------ccCHHHHHHHHHHHHHHHHHhC
Confidence 56322 1 0110 0 011 2367888888888888887777
No 241
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=47.09 E-value=19 Score=36.33 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=40.1
Q ss_pred HHcCCCEEEcCCCCCCCCC----------CCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 53 SKSGFTSVWLPPATHSFAP----------EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 53 k~lGv~~I~L~Pi~~~~~~----------~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
++.|+...|+.+- +...- ..=...-+..+....|+..+++++++.||++|+-|++|.+
T Consensus 133 ~~~Ga~v~~i~~~-~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 133 KRTGAKVRVIPLD-DDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred HhcCcEEEEEecC-CCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECc
Confidence 4468887777654 22110 0111222345557789999999999999999999999986
No 242
>PLN02814 beta-glucosidase
Probab=46.99 E-value=82 Score=32.75 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=44.9
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
+.+..-.|-++-+|+||+++-=++=-...--+.|-. .+ .-...+=.++||++|.++||+-|+=+ .|-
T Consensus 74 D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g-----~~--N~~Gl~fY~~lId~l~~~GI~P~VTL--~H~ 140 (504)
T PLN02814 74 DGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRG-----LI--NPKGLLFYKNLIKELRSHGIEPHVTL--YHY 140 (504)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCC-----CC--CHHHHHHHHHHHHHHHHcCCceEEEe--cCC
Confidence 478899999999999999987664211111111210 11 12234558999999999999999866 553
No 243
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=46.70 E-value=1.1e+02 Score=30.10 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
.+.+|+|++++|++|-+++ +-++|.+...
T Consensus 77 i~~~~~l~~~vh~~G~~i~--~QL~h~G~~~ 105 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAI--LQIFHAGRMA 105 (353)
T ss_pred hHHHHHHHHHHHhCCCeEE--EEecCCCCCC
Confidence 6789999999999999998 4559988754
No 244
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=46.50 E-value=82 Score=30.41 Aligned_cols=117 Identities=13% Similarity=0.121 Sum_probs=70.9
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCC-----CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc--CCEEEEEEcccc
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSF-----APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH--KVRAMADIVINH 114 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-----~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~--Gi~VilD~V~NH 114 (413)
.+.+.+.+..+.++|+.+|-|-|+.+.. +...|++. .-+++-|+++++. .|-||.|+.+-.
T Consensus 53 ~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~------------g~v~~air~iK~~~p~l~vi~DVclc~ 120 (320)
T cd04823 53 IDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPD------------NLVCRAIRAIKEAFPELGIITDVALDP 120 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCC------------ChHHHHHHHHHHhCCCcEEEEeeeccC
Confidence 9999999999999999999999985332 12222221 1245555555553 899999998875
Q ss_pred CcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecc
Q 015125 115 RVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 115 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~ 194 (413)
-... .+| ..- -+=...|.+..+.+.+...-.. +-|+|-+-
T Consensus 121 YT~h-------------------GHc---------------Gil--~~~~idND~Tl~~L~~~Avs~A-~AGADiVA--- 160 (320)
T cd04823 121 YTSH-------------------GHD---------------GIV--RDGGILNDETVEVLCKQALVQA-EAGADIVA--- 160 (320)
T ss_pred CCCC-------------------Ccc---------------eec--cCCcCcCHHHHHHHHHHHHHHH-HhCCCEEE---
Confidence 3331 111 000 0011457777788888777775 88887653
Q ss_pred cCCCcHHHHHHHHHhh
Q 015125 195 ARGYSAKYVKEYIEGA 210 (413)
Q Consensus 195 a~~i~~~~~~~~~~~~ 210 (413)
...|-..-...+.+++
T Consensus 161 PSdMMDGrV~aIR~aL 176 (320)
T cd04823 161 PSDMMDGRIGAIREAL 176 (320)
T ss_pred cccchhhHHHHHHHHH
Confidence 2333333334444443
No 245
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=46.47 E-value=57 Score=30.67 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=38.2
Q ss_pred HH-HHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 42 WR-NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 42 ~~-gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
|+ |+.+-+..+++.||++|.++- + ..++.++++++|.++||..|+=+.++
T Consensus 102 ~~~G~e~f~~~~~~aGvdGviipD-----------------L-----p~ee~~~~~~~~~~~gl~~I~lvap~ 152 (258)
T PRK13111 102 FQYGVERFAADAAEAGVDGLIIPD-----------------L-----PPEEAEELRAAAKKHGLDLIFLVAPT 152 (258)
T ss_pred hhcCHHHHHHHHHHcCCcEEEECC-----------------C-----CHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 44 777778888888888888741 1 24789999999999999999545554
No 246
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=46.17 E-value=31 Score=34.66 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=39.5
Q ss_pred hhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEEccccCcC
Q 015125 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (413)
Q Consensus 47 ~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~-VilD~V~NH~~~ 117 (413)
++|..|++.|||.|.|.. ...+..-+-.++ +--+.++..+.++.+++.|+. |-+|+.++.-+.
T Consensus 116 e~l~~l~~~GvnrislGv-------QS~~d~~L~~l~-R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgq 179 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGV-------QAFQDELLALCG-RSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQ 179 (400)
T ss_pred HHHHHHHHCCCCEEEEEc-------ccCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 455555556666555543 011112122333 334678899999999999999 779999986554
No 247
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=46.15 E-value=37 Score=32.81 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc----------HHHHHHHHHhhC
Q 015125 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS----------AKYVKEYIEGAR 211 (413)
Q Consensus 167 ~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~----------~~~~~~~~~~~~ 211 (413)
++.-|+.+++.+..+++++|+||+-+|-=.... ..|++++.++++
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~ 150 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALK 150 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhc
Confidence 567789999999999999999999999754433 246666665543
No 248
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=46.05 E-value=32 Score=29.94 Aligned_cols=53 Identities=8% Similarity=0.070 Sum_probs=36.4
Q ss_pred hhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 48 KVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 48 ~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
..--|+.||.....+. .|+.-++...-..+.+.++++.+++.|+.|++|.+.-
T Consensus 42 ~a~~l~~LG~~~~~~~-------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~ 94 (196)
T cd00287 42 VAVALARLGVSVTLVG-------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGPR 94 (196)
T ss_pred HHHHHHHCCCcEEEEE-------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 3445778898887777 2222332211114789999999999999999999743
No 249
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=46.00 E-value=20 Score=32.81 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=38.9
Q ss_pred CCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 38 KHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 38 ~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
..++-+...+.++.+...|+|+|-+.|+.. +.+..++++|.+.||.||+
T Consensus 37 ~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~----------------------~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 37 AQNDPEEQIEQIEQAISQGVDGIIVSPVDP----------------------DSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp STTTHHHHHHHHHHHHHTTESEEEEESSST----------------------TTTHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCEEEecCCCH----------------------HHHHHHHHHHhhcCceEEE
Confidence 345678888888888899999999888532 2355777899999999998
No 250
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=45.85 E-value=55 Score=31.32 Aligned_cols=52 Identities=6% Similarity=0.030 Sum_probs=37.4
Q ss_pred CCCCCc--cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 35 ESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 35 ~~~~~g--~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
.|.++| |++++.+.++++.+.||++|.+.-- ...++.+ |.+|-+++++.+-+
T Consensus 16 Pf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~Gs----------tGE~~~L-----t~eEr~~v~~~~~~ 69 (296)
T TIGR03249 16 PFDADGSFDEAAYRENIEWLLGYGLEALFAAGG----------TGEFFSL-----TPAEYEQVVEIAVS 69 (296)
T ss_pred CcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCC----------CcCcccC-----CHHHHHHHHHHHHH
Confidence 455566 8999999999999999999997652 2223444 46677777665544
No 251
>PLN02849 beta-glucosidase
Probab=45.84 E-value=84 Score=32.70 Aligned_cols=67 Identities=15% Similarity=0.276 Sum_probs=44.3
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
+.+..-.+-+.-+|+||+++-=++=-...--+.|-. .++ --..+=.++||++|+++||+-|+=+ .|-
T Consensus 76 D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g-----~vN--~~gl~fY~~lid~l~~~GI~P~VTL--~H~ 142 (503)
T PLN02849 76 DGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRG-----SVN--PKGLQFYKNFIQELVKHGIEPHVTL--FHY 142 (503)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCC-----CCC--HHHHHHHHHHHHHHHHcCCeEEEee--cCC
Confidence 378889999999999999987654211111111211 121 1124458999999999999999866 453
No 252
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=45.74 E-value=69 Score=30.52 Aligned_cols=29 Identities=7% Similarity=-0.113 Sum_probs=25.3
Q ss_pred CCCCc--cHHHHHhhhhhHHHcCCCEEEcCC
Q 015125 36 SCKHD--WWRNLERKVPDISKSGFTSVWLPP 64 (413)
Q Consensus 36 ~~~~g--~~~gi~~~L~yLk~lGv~~I~L~P 64 (413)
|.++| |++++...++++.+.||++|.+.-
T Consensus 12 f~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~G 42 (289)
T cd00951 12 FDADGSFDEDAYRAHVEWLLSYGAAALFAAG 42 (289)
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 45555 899999999999999999999765
No 253
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=45.43 E-value=3.4e+02 Score=28.86 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
.+++.+.++... +.|+|.+++ |++..+.+.-..+++.+++
T Consensus 148 ~~~~~~~~~~~~-~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk 188 (582)
T TIGR01108 148 LETYLDLAEELL-EMGVDSICIKDMAGILTPKAAYELVSALK 188 (582)
T ss_pred HHHHHHHHHHHH-HcCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence 467888888887 899999886 7888888877777666654
No 254
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=45.43 E-value=77 Score=31.40 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=44.2
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
+.+.+.+....||++|+..+-=.+.-+..+.++ |-.+ +.+.++.|.+.|++.||.++-++
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~-----f~g~-----~~e~l~~L~~~~~~~Gl~~~t~v 189 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYD-----FQGL-----GVEGLKILKQVADEYGLAVISEI 189 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEccccCCCCCCcc-----ccCC-----CHHHHHHHHHHHHHcCCCEEEee
Confidence 578888889999999998777444333333333 2222 26899999999999999999876
No 255
>PLN02747 N-carbamolyputrescine amidase
Probab=45.34 E-value=1.3e+02 Score=28.58 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=43.7
Q ss_pred CccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcc----cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 39 HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQ----NLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 39 ~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~----d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
+++++.+.+.+...++.|++-|.++=.+-. ||... +++......-..+.+.+|.+.|.+.||-|++=+
T Consensus 21 ~~N~~~i~~~i~~A~~~gadlvvfPE~~l~----g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~ 92 (296)
T PLN02747 21 AANVDKAERLVREAHAKGANIILIQELFEG----YYFCQAQREDFFQRAKPYEGHPTIARMQKLAKELGVVIPVSF 92 (296)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEcccccCC----CCCccccccchhhhcccCCCChHHHHHHHHHHHcCeEEEeee
Confidence 367888888888888999999887655332 23221 223222212222567788888899999888644
No 256
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=45.26 E-value=64 Score=32.53 Aligned_cols=63 Identities=8% Similarity=0.084 Sum_probs=46.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
+.+.+.+-..-|+++|||++-|.-+.... .+-|-|+..| ....++|.+.....||||.|-+-+
T Consensus 181 n~qR~kDYAR~laSiGINg~v~NNVNvk~-------~e~~lit~~f--l~k~aklAdiFR~YGIK~yLsinf 243 (684)
T COG3661 181 NDQRMKDYARALASIGINGTVLNNVNVKK-------AESYLITAPF--LAKAAKLADIFRPYGIKVYLSINF 243 (684)
T ss_pred chHHHHHHHHHHhhcCcceEEecccccch-------hhhheechHh--HHHHHHHHHHhhhccceEEEEecc
Confidence 56788888888999999999998776442 1112333332 467889999999999999998743
No 257
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=44.97 E-value=38 Score=33.62 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=43.6
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEEccccCcC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~-VilD~V~NH~~~ 117 (413)
.++|..|+++|||.|.|..= + .+..-+-.++ +--+.++..+.++.+++.|+. |-+|+.+..-+.
T Consensus 103 ~~~l~~l~~~G~nrislGvQ--S-----~~~~~L~~l~-R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgq 167 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQ--T-----FDDPLLKLLG-RTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQ 167 (370)
T ss_pred HHHHHHHHHCCCCEEEEccc--c-----CCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 46788888888888877541 0 1111122333 223678888999999999996 889999886544
No 258
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=44.87 E-value=2.3e+02 Score=26.94 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=35.1
Q ss_pred HHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCC--CCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 53 SKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS--YGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 53 k~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~--~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
++-.+|.|-|.=+...+. .|+-..|+-..... ++.=.+|.+-|+.|+++|+||+|=+
T Consensus 21 ~~~~~dii~i~Fl~~~~~-~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLSI 79 (280)
T cd02877 21 DTGNYDIVNISFLNVFGS-GGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLSI 79 (280)
T ss_pred CCCCccEEEEEeEcccCC-CCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEEc
Confidence 344578887765554433 33333333332211 1134689999999999999999964
No 259
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=44.84 E-value=68 Score=31.86 Aligned_cols=60 Identities=10% Similarity=0.022 Sum_probs=41.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
|++.+++.+.. ...+|.+.||+-.. |. ..-.++.|+++++-|+++|+-||+|=|.-+.+.
T Consensus 176 d~~~le~~i~~----~~~aii~e~~~~~~---G~----------~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~ 235 (401)
T PRK00854 176 DAEALEAAITP----NTVAFLVEPIQGEA---GV----------IIPPAGYFTRVRELCTANNVTLILDEIQTGLGR 235 (401)
T ss_pred CHHHHHHHhCC----CeEEEEEccccCCC---CC----------cCCCHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 57777766541 46688888765321 10 011256799999999999999999999865544
No 260
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=44.81 E-value=65 Score=30.60 Aligned_cols=57 Identities=19% Similarity=0.224 Sum_probs=38.2
Q ss_pred CCCc--cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH---cCCEEEE
Q 015125 37 CKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ---HKVRAMA 108 (413)
Q Consensus 37 ~~~g--~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~---~Gi~Vil 108 (413)
.++| |++++.+.++++-+.||++|.+.-- ...++.+ |.+|-++|++.+.+ -.+.||+
T Consensus 14 ~~dg~id~~~~~~~i~~l~~~Gv~gl~~~Gs----------tGE~~~L-----t~~Er~~l~~~~~~~~~~~~~vi~ 75 (289)
T PF00701_consen 14 NADGSIDEDALKRLIDFLIEAGVDGLVVLGS----------TGEFYSL-----TDEERKELLEIVVEAAAGRVPVIA 75 (289)
T ss_dssp ETTSSB-HHHHHHHHHHHHHTTSSEEEESST----------TTTGGGS------HHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCCEEEECCC----------CcccccC-----CHHHHHHHHHHHHHHccCceEEEe
Confidence 3455 8999999999999999999998752 1223444 46666666666544 3466665
No 261
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=44.72 E-value=99 Score=29.42 Aligned_cols=53 Identities=4% Similarity=0.181 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCH
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQH 168 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~ 168 (413)
-+++..-|..|+++||+|..=+.++= | -
T Consensus 167 ~~~y~dav~r~rkrgIkvc~HiI~GL-----P-----------------------------------------g------ 194 (312)
T COG1242 167 FACYVDAVKRLRKRGIKVCTHLINGL-----P-----------------------------------------G------ 194 (312)
T ss_pred hHHHHHHHHHHHHcCCeEEEEEeeCC-----C-----------------------------------------C------
Confidence 46788999999999999986554431 1 0
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEeecc
Q 015125 169 FVRKDIIAWLRWLRNTVGFQDFRFDF 194 (413)
Q Consensus 169 ~vr~~l~~~~~~w~~~~gvDGfR~D~ 194 (413)
+-++.+++.++... ..||||+-+--
T Consensus 195 E~~~~mleTak~v~-~~~v~GIKlH~ 219 (312)
T COG1242 195 ETRDEMLETAKIVA-ELGVDGIKLHP 219 (312)
T ss_pred CCHHHHHHHHHHHH-hcCCceEEEEE
Confidence 22678999999665 99999998854
No 262
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=44.47 E-value=72 Score=30.38 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=24.8
Q ss_pred CCCCc--cHHHHHhhhhhHHHcCCCEEEcCC
Q 015125 36 SCKHD--WWRNLERKVPDISKSGFTSVWLPP 64 (413)
Q Consensus 36 ~~~~g--~~~gi~~~L~yLk~lGv~~I~L~P 64 (413)
|+++| |++++.+.++++.+.||++|.+.-
T Consensus 13 f~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~G 43 (292)
T PRK03170 13 FKEDGSVDFAALRKLVDYLIANGTDGLVVVG 43 (292)
T ss_pred cCCCCCcCHHHHHHHHHHHHHcCCCEEEECC
Confidence 44555 899999999999999999999753
No 263
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=44.46 E-value=36 Score=33.71 Aligned_cols=63 Identities=8% Similarity=0.017 Sum_probs=40.6
Q ss_pred hhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEEccccCcC
Q 015125 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 117 (413)
Q Consensus 47 ~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~-VilD~V~NH~~~ 117 (413)
++|..|+++|++.|.|.. ++. +..-+-.++ +-.+.++..+-++.+++.|+. |-+|+.++-.+.
T Consensus 100 e~l~~l~~~G~~rvsiGv--qS~-----~d~~L~~l~-R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgq 163 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGL--QAW-----QNSLLKYLG-RIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQ 163 (374)
T ss_pred HHHHHHHHcCCCEEEEEC--ccC-----CHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Confidence 566666666776666544 111 111122232 334788999999999999997 779999885444
No 264
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=44.37 E-value=23 Score=29.10 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 015125 83 NSSYGSEHLLKALLHKMKQHKVRAMAD 109 (413)
Q Consensus 83 d~~~Gt~~~~~~Lv~~~h~~Gi~VilD 109 (413)
..++-+..|++.+-+...++||+|++|
T Consensus 15 G~ri~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 15 GQRIMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred CcEeeeHHHHHHHHHHHHhCCcEEEEC
Confidence 467778899999999999999999998
No 265
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=44.35 E-value=1.9e+02 Score=27.53 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 172 KDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
+++.+.++... +.|+|-+++ |++....|.-..++...++
T Consensus 147 ~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~l~~~l~ 186 (280)
T cd07945 147 DYVFQLVDFLS-DLPIKRIMLPDTLGILSPFETYTYISDMV 186 (280)
T ss_pred HHHHHHHHHHH-HcCCCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 57888888887 899999887 7788888887777777765
No 266
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=44.31 E-value=20 Score=33.00 Aligned_cols=26 Identities=4% Similarity=0.123 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
.+++++++++||+.||+||+...+..
T Consensus 111 ~~~i~~v~~~~~~~gl~vIlE~~l~~ 136 (236)
T PF01791_consen 111 IEEIAAVVEECHKYGLKVILEPYLRG 136 (236)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECECH
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecCc
Confidence 36899999999999999999977653
No 267
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=44.12 E-value=1.2e+02 Score=28.65 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
.+++++.++... +.|+|.+++ |++..+.|.-..++++.++
T Consensus 148 ~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~ 188 (274)
T cd07938 148 PERVAEVAERLL-DLGCDEISLGDTIGVATPAQVRRLLEAVL 188 (274)
T ss_pred HHHHHHHHHHHH-HcCCCEEEECCCCCccCHHHHHHHHHHHH
Confidence 457888888886 899999987 7778888888887777765
No 268
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=44.04 E-value=83 Score=31.03 Aligned_cols=79 Identities=9% Similarity=-0.101 Sum_probs=58.1
Q ss_pred CCceeEEEeee-cCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-------------------CCC---------C
Q 015125 23 NGREILFQGFN-WESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF-------------------APE---------G 73 (413)
Q Consensus 23 ~~~~~i~~~f~-~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-------------------~~~---------g 73 (413)
++-.+++-+.. |+ .+..+..+..|+++|+..|+ =|+-... +-. .
T Consensus 162 ~~~~l~vDaN~~w~------~~~A~~~~~~l~~~~l~~iE-eP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~ 234 (361)
T cd03322 162 FEFHLLHDVHHRLT------PNQAARFGKDVEPYRLFWME-DPTPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQ 234 (361)
T ss_pred CCceEEEECCCCCC------HHHHHHHHHHhhhcCCCEEE-CCCCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHH
Confidence 33356777776 66 88889999999999998888 3442211 111 1
Q ss_pred CCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 74 YLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 74 Y~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
....|..++++ +.|+..+.+++++.|+++||+++.
T Consensus 235 ~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~ 270 (361)
T cd03322 235 ERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGW 270 (361)
T ss_pred hCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeec
Confidence 34577778886 559999999999999999999985
No 269
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=43.86 E-value=17 Score=20.88 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.8
Q ss_pred HHHHHhhhhhHHHcCCC
Q 015125 42 WRNLERKVPDISKSGFT 58 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~ 58 (413)
-+.+..+++||+++|++
T Consensus 15 ~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 15 EKKLKPKVEFLKELGFS 31 (31)
T ss_pred HHHhhHHHHHHHHcCCC
Confidence 57788899999999985
No 270
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=43.82 E-value=36 Score=31.88 Aligned_cols=80 Identities=13% Similarity=0.186 Sum_probs=51.6
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCC--------cccCCCCCCCC--------CCH
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYL--------PQNLYSLNSSY--------GSE 89 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~--------~~d~~~id~~~--------Gt~ 89 (413)
.+++++=+... -.+.+.+...+..|+++||..- | ..=.-||+ +.|+-.||..| ...
T Consensus 121 ~l~lEitE~~~--~~~~~~~~~~l~~L~~~G~~ia-l-----DDFGtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~ 192 (256)
T COG2200 121 RLVLEITESAL--IDDLDTALALLRQLRELGVRIA-L-----DDFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQ 192 (256)
T ss_pred eEEEEEeCchh--hcCHHHHHHHHHHHHHCCCeEE-E-----ECCCCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchH
Confidence 35555444321 1356678889999999997432 2 11123443 44555666433 334
Q ss_pred HHHHHHHHHHHHcCCEEEEEEccc
Q 015125 90 HLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 90 ~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
.-++.+|+-||+.||+||...|=+
T Consensus 193 ~iv~~iv~la~~l~~~vvaEGVEt 216 (256)
T COG2200 193 AIVRAIVALAHKLGLTVVAEGVET 216 (256)
T ss_pred HHHHHHHHHHHHCCCEEEEeecCC
Confidence 569999999999999999998754
No 271
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=43.71 E-value=8.7 Score=34.01 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=33.5
Q ss_pred hhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 015125 49 VPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107 (413)
Q Consensus 49 L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vi 107 (413)
|..++++|+++|++.+..... .. +. .++++++.+.+.++||+|.
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~------~~------~~---~~~~~~~~~~~~~~gl~i~ 44 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQP------WD------EK---DDEAEELRRLLEDYGLKIA 44 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSH------HT------HH---HHHHHHHHHHHHHTTCEEE
T ss_pred ChHHHHcCCCEEEEecCCCcc------cc------cc---hHHHHHHHHHHHHcCCeEE
Confidence 467899999999998754331 01 11 7889999999999999965
No 272
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=43.60 E-value=32 Score=29.57 Aligned_cols=63 Identities=10% Similarity=0.061 Sum_probs=40.1
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
.+.++.|++.|++.|+++-=. -+...+..+....++.++..+.++.++++|+.|.+.+++...
T Consensus 88 ~~~~~~l~~~g~~~i~i~le~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~ 150 (204)
T cd01335 88 EELLKELKELGLDGVGVSLDS-------GDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLG 150 (204)
T ss_pred HHHHHHHHhCCCceEEEEccc-------CCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecC
Confidence 344555555566666554311 111112222235667899999999999999999999988743
No 273
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=43.39 E-value=33 Score=30.12 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=26.3
Q ss_pred hhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 015125 49 VPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 100 (413)
Q Consensus 49 L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h 100 (413)
+..+.++|+|.|-++|+|++.+--++.+. +.+.|+++++.+.
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~~~~----------g~~~l~~~~~~~~ 149 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGAPPL----------GLDGLREIARASP 149 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS-TTC----------HHHHHHHHHHHTS
T ss_pred HHHhhhcCCCEEEECCccCCCCCcccccc----------CHHHHHHHHHhCC
Confidence 55566899999999999998654443332 2555666655553
No 274
>PRK05481 lipoyl synthase; Provisional
Probab=43.26 E-value=94 Score=29.71 Aligned_cols=79 Identities=9% Similarity=0.035 Sum_probs=56.1
Q ss_pred ccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 015125 19 AVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHK 98 (413)
Q Consensus 19 ~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~ 98 (413)
|.++-..++|+ +| -. +.+.+.+.|..|+++|++.+.+.|-.+ ++.-. +.| |..=.++.+++|.+.
T Consensus 194 pgi~~~t~~Iv-Gf-GE-----T~ed~~~tl~~lrel~~d~v~if~Ys~-pa~k~------~~v-~~~~k~~r~~~l~~~ 258 (289)
T PRK05481 194 PGIPTKSGLMV-GL-GE-----TDEEVLEVMDDLRAAGVDILTIGQYLQ-PSRKH------LPV-ERYVTPEEFDEYKEI 258 (289)
T ss_pred CCCeEeeeeEE-EC-CC-----CHHHHHHHHHHHHhcCCCEEEEEccCC-Ccccc------CCC-CCcCCHHHHHHHHHH
Confidence 34444434555 56 56 799999999999999999999977655 22211 234 455568899999999
Q ss_pred HHHcCCEEEEEEcc
Q 015125 99 MKQHKVRAMADIVI 112 (413)
Q Consensus 99 ~h~~Gi~VilD~V~ 112 (413)
+.+.|+.-|+-..+
T Consensus 259 ~~~i~~~~~~~~~~ 272 (289)
T PRK05481 259 ALELGFLHVASGPL 272 (289)
T ss_pred HHHcCchheEecCc
Confidence 99999976654433
No 275
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=43.19 E-value=1.3e+02 Score=30.91 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 170 VRKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 170 vr~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
..+++.+.++... +.|+|.+++ |++..+.|.-..+++++++
T Consensus 161 t~~y~~~~a~~l~-~~Gad~I~IkDtaG~l~P~~v~~Lv~alk 202 (468)
T PRK12581 161 TLNYYLSLVKELV-EMGADSICIKDMAGILTPKAAKELVSGIK 202 (468)
T ss_pred cHHHHHHHHHHHH-HcCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence 3578888888886 899999987 7888888888888877765
No 276
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=42.86 E-value=62 Score=30.28 Aligned_cols=80 Identities=9% Similarity=0.099 Sum_probs=55.6
Q ss_pred CCceeEEEeee-cCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCC-----------------CCCCCC---C------CC
Q 015125 23 NGREILFQGFN-WESCKHDWWRNLERKVPDISKSGFTSVWLPPAT-----------------HSFAPE---G------YL 75 (413)
Q Consensus 23 ~~~~~i~~~f~-~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~-----------------~~~~~~---g------Y~ 75 (413)
++-..++-+.. |+ .+..++.+..|+++++..|+= |+- -..+-+ . ..
T Consensus 126 ~~~~l~vDaN~~w~------~~~A~~~~~~l~~~~i~~iEq-P~~~~d~~~~~~l~~~~PIa~dEs~~~~~~~~~~~~~~ 198 (263)
T cd03320 126 ADAKLRLDANGGWS------LEEALAFLEALAAGRIEYIEQ-PLPPDDLAELRRLAAGVPIALDESLRRLDDPLALAAAG 198 (263)
T ss_pred CCCeEEEeCCCCCC------HHHHHHHHHhhcccCCceEEC-CCChHHHHHHHHhhcCCCeeeCCccccccCHHHHHhcC
Confidence 34355666655 44 788889999999999988872 332 111111 1 22
Q ss_pred cccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEE
Q 015125 76 PQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMAD 109 (413)
Q Consensus 76 ~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD 109 (413)
..|...+++ +.|+..+.+++++.|+++||++++-
T Consensus 199 ~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~ 233 (263)
T cd03320 199 ALGALVLKPALLGGPRALLELAEEARARGIPAVVS 233 (263)
T ss_pred CCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 355566665 5699999999999999999999875
No 277
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=42.59 E-value=1.4e+02 Score=28.57 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHH
Q 015125 90 HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHF 169 (413)
Q Consensus 90 ~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~ 169 (413)
+.+++.|+.|+++|++|..-+..-..... . . . .+
T Consensus 120 ~~~~~~v~~ak~~g~~v~~~i~~~~~~~~-----------~---------------~-~-----------------~~-- 153 (287)
T PRK05692 120 ERFEPVAEAAKQAGVRVRGYVSCVLGCPY-----------E---------------G-E-----------------VP-- 153 (287)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEEecCCC-----------C---------------C-C-----------------CC--
Confidence 35889999999999998877654311110 0 0 0 01
Q ss_pred HHHHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 170 VRKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 170 vr~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
.+++.+.++... +.|+|.+++ |++....|.-..++++.++
T Consensus 154 -~~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~ 194 (287)
T PRK05692 154 -PEAVADVAERLF-ALGCYEISLGDTIGVGTPGQVRAVLEAVL 194 (287)
T ss_pred -HHHHHHHHHHHH-HcCCcEEEeccccCccCHHHHHHHHHHHH
Confidence 367888888887 899999887 7788888887777777765
No 278
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=42.43 E-value=1e+02 Score=20.67 Aligned_cols=40 Identities=15% Similarity=0.338 Sum_probs=23.1
Q ss_pred CEEEEEE--CCEEEEEEcCCCCCC---CCCCcEEeeeC--CceEEee
Q 015125 373 NLYSAII--GDKVCMKIGDGSWCP---AGKEWTLATSG--HKYAVWH 412 (413)
Q Consensus 373 ~~~~~~r--~~~~lv~lnn~~~~~---~~~~~~~~~s~--~~~~~~~ 412 (413)
.+.+-.+ ..+++++|+.+-.+| .++.|...++. -.-+||+
T Consensus 5 GLv~t~~Gs~q~lv~AldSnlssP~qVasGsfs~a~N~dnG~vRiWr 51 (51)
T PF09081_consen 5 GLVATTSGSNQKLVFALDSNLSSPNQVASGSFSQAVNEDNGQVRIWR 51 (51)
T ss_dssp SEEEEEE-SS-EEEEEES-----GGGT-SS--EEEEEETTTTEEEEE
T ss_pred ceEEEEeccccEEEEEecCCCCCcccccccchHhhhhccCCcEEeeC
Confidence 3555566 568888998855444 56889999887 7788885
No 279
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=41.98 E-value=89 Score=29.51 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=42.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
+.+.+.+....||++|+..+-.. .++..+. |.+|.. +| ++.++.|.+.|++.||.++-++
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~-~~kpRTs----~~s~~G----~g-~~gl~~l~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGG-AFKPRTS----PYSFQG----LG-EEGLKILKEVGDKYNLPVVTEV 98 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-eecCCCC----CCccCC----cH-HHHHHHHHHHHHHcCCCEEEee
Confidence 68899999999999999855543 2332111 111111 12 8899999999999999999887
No 280
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=41.75 E-value=56 Score=32.61 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=47.2
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCC----------CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFA----------PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~----------~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+..+..-+..++..|+..+++.+- +... .......-...+....|...+++++++.||++|+.|++|-
T Consensus 101 ~h~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~ 179 (402)
T TIGR02006 101 EHKAVLDTCRYLEREGFEVTYLPPK-SNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDA 179 (402)
T ss_pred ccHHHHHHHHHHHhcCCEEEEEccC-CCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEc
Confidence 3555555555677789988887532 2110 1122222233455567889999999999999999999999
Q ss_pred cc
Q 015125 111 VI 112 (413)
Q Consensus 111 V~ 112 (413)
+-
T Consensus 180 a~ 181 (402)
T TIGR02006 180 AQ 181 (402)
T ss_pred ch
Confidence 84
No 281
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=41.70 E-value=50 Score=30.65 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=34.2
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
...+.+.|+.++++|+++|.|.| .++-+.+ .++.++|.+.++++|+.+..
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~-------~~~~~~~----------~~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSP-------GDLFPAD----------YKELAELKELLADYGLEITS 63 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCC-------cccCCch----------hhhHHHHHHHHHHcCcEEEe
Confidence 45567899999999999999998 1111221 11166667777777887765
No 282
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=41.66 E-value=77 Score=30.17 Aligned_cols=35 Identities=6% Similarity=-0.133 Sum_probs=30.1
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCC
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT 66 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~ 66 (413)
++|.++..=+ .+..++...+.+++|+++|.++|++
T Consensus 72 ~vi~gv~~~~------~~~~i~~a~~a~~~G~d~v~~~pP~ 106 (292)
T PRK03170 72 PVIAGTGSNS------TAEAIELTKFAEKAGADGALVVTPY 106 (292)
T ss_pred cEEeecCCch------HHHHHHHHHHHHHcCCCEEEECCCc
Confidence 5777777644 8999999999999999999999864
No 283
>PRK00915 2-isopropylmalate synthase; Validated
Probab=41.66 E-value=2.3e+02 Score=29.49 Aligned_cols=114 Identities=5% Similarity=-0.033 Sum_probs=69.9
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcC-CCCCCCCCCCCCcccCCCCCCCCCC-----HHHHHHHHHHH
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLP-PATHSFAPEGYLPQNLYSLNSSYGS-----EHLLKALLHKM 99 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~-Pi~~~~~~~gY~~~d~~~id~~~Gt-----~~~~~~Lv~~~ 99 (413)
.+-+.+|.+. .-.++...++.+++.|++.|.+. |..+. .+...++. .+..++.|+.|
T Consensus 67 ~~~i~a~~r~-----~~~did~a~~a~~~~~~~~v~i~~~~Sd~------------h~~~~l~~s~~e~l~~~~~~v~~a 129 (513)
T PRK00915 67 NSTVCGLARA-----VKKDIDAAAEALKPAEAPRIHTFIATSPI------------HMEYKLKMSREEVLEMAVEAVKYA 129 (513)
T ss_pred CCEEEEEccC-----CHHHHHHHHHHhhcCCCCEEEEEECCcHH------------HHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3566778765 46667778888888999888763 32111 11111222 34467888999
Q ss_pred HHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHH
Q 015125 100 KQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLR 179 (413)
Q Consensus 100 h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~ 179 (413)
+++|++|.++.- +. .. .+ .+++.++++
T Consensus 130 k~~g~~v~f~~e------d~-----------------~r---------------------------~d---~~~l~~~~~ 156 (513)
T PRK00915 130 RSYTDDVEFSAE------DA-----------------TR---------------------------TD---LDFLCRVVE 156 (513)
T ss_pred HHCCCeEEEEeC------CC-----------------CC---------------------------CC---HHHHHHHHH
Confidence 999999854431 00 00 00 356777777
Q ss_pred HHHhhcCCCeEee-cccCCCcHHHHHHHHHhh
Q 015125 180 WLRNTVGFQDFRF-DFARGYSAKYVKEYIEGA 210 (413)
Q Consensus 180 ~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~ 210 (413)
... +.|+|-+++ |++..+.|.-..++++.+
T Consensus 157 ~~~-~~Ga~~i~l~DTvG~~~P~~~~~~i~~l 187 (513)
T PRK00915 157 AAI-DAGATTINIPDTVGYTTPEEFGELIKTL 187 (513)
T ss_pred HHH-HcCCCEEEEccCCCCCCHHHHHHHHHHH
Confidence 776 788888875 666666666555555444
No 284
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=41.43 E-value=33 Score=32.11 Aligned_cols=22 Identities=9% Similarity=0.380 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEE
Q 015125 89 EHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+++++|++.||+.||.|++.+
T Consensus 142 ~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEEEE
Confidence 4679999999999999999997
No 285
>PLN02998 beta-glucosidase
Probab=41.39 E-value=95 Score=32.24 Aligned_cols=62 Identities=13% Similarity=0.246 Sum_probs=43.1
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcC----CCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLP----PATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~----Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
+.+..-.|-++-+|+||+++-=++ =|++. |-. .+ .-...+=.++||++|.++||+-|+=+ .|
T Consensus 79 D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~----G~g-----~v--N~~gl~~Y~~lid~L~~~GIeP~VTL--~H 144 (497)
T PLN02998 79 DQYHKYKEDVKLMADMGLEAYRFSISWSRLLPS----GRG-----PI--NPKGLQYYNNLIDELITHGIQPHVTL--HH 144 (497)
T ss_pred cHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcC----CCC-----Cc--CHHHHHHHHHHHHHHHHcCCceEEEe--cC
Confidence 368888899999999999986554 22222 100 11 11234558999999999999999866 55
No 286
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=41.29 E-value=45 Score=29.00 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=32.0
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
|+-.+..++..= .. +|+|.++|++-.++|.+ .+-|++...+.. -.+.+|++.+.+.--.|++=+.=|
T Consensus 56 D~~~~~~~~~~~-~~-~D~vFlSPPWGGp~Y~~---~~~fdL~~~~~p-~~~~~l~~~~~~~t~nv~l~LPRn 122 (163)
T PF09445_consen 56 DFFELLKRLKSN-KI-FDVVFLSPPWGGPSYSK---KDVFDLEKSMQP-FNLEDLLKAARKITPNVVLFLPRN 122 (163)
T ss_dssp -HHHHGGGB--------SEEEE---BSSGGGGG---SSSB-TTTSSSS---HHHHHHHHHHH-S-EEEEEETT
T ss_pred CHHHHHhhcccc-cc-ccEEEECCCCCCccccc---cCccCHHHccCC-CCHHHHHHHHHhhCCCEEEEeCCC
Confidence 566644443321 12 89999999988876655 334455434433 346677777777666676655433
No 287
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=41.27 E-value=66 Score=31.27 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=40.3
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEEcc
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVI 112 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~-VilD~V~ 112 (413)
.+.++.|++.|++.|.++- ++.++.-|..+...-|+.++..+-++.|.+.|+. |-+-+|+
T Consensus 102 ~~~~~~L~~~gl~~v~ISl-------d~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv 162 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSL-------DSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVV 162 (334)
T ss_pred HHHHHHHHHcCCCeEEEec-------ccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 3566777777777777654 2223333334433446889999999999999997 7777665
No 288
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=41.14 E-value=38 Score=33.30 Aligned_cols=70 Identities=9% Similarity=0.059 Sum_probs=49.5
Q ss_pred HHHHHhhhhhHH-HcCCCEEEcCCCCCCCC---------CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 42 WRNLERKVPDIS-KSGFTSVWLPPATHSFA---------PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 42 ~~gi~~~L~yLk-~lGv~~I~L~Pi~~~~~---------~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
+-+...-+..+. ..|++..++..-....- .......-+..++..-|...+++++.+.||++|+-+++|.+
T Consensus 98 ~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~ 177 (371)
T PF00266_consen 98 HPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAA 177 (371)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-T
T ss_pred ccccccccccccccchhhhccccccccchhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhhccCCceeEech
Confidence 556665566554 67888877744222211 14445555667778889999999999999999999999996
No 289
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=41.03 E-value=49 Score=33.16 Aligned_cols=64 Identities=13% Similarity=0.042 Sum_probs=44.6
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
.++|..|+++|||-|.|..= + .+..-+..++ +.-+.++..+.++.|++.+..|-+|++++.-+.
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQ--S-----~~d~~L~~lg-R~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgq 174 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQ--S-----LKEDDLKKLG-RTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQ 174 (390)
T ss_pred HHHHHHHHHCCCCEEEEECC--c-----CCHHHHHHcC-CCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCC
Confidence 37888888888888887641 0 1111122332 444678888888999999999999999987555
No 290
>PRK09989 hypothetical protein; Provisional
Probab=40.88 E-value=58 Score=30.25 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=30.0
Q ss_pred HHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 015125 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107 (413)
Q Consensus 44 gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vi 107 (413)
.+.+.++.++++|+++|+|.-+ .+ . + .+++.+.+.++||+|.
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~------~~--------~-----~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFP------YD--------Y-----S---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCc------cc--------C-----C---HHHHHHHHHHcCCcEE
Confidence 4678999999999999999421 11 1 1 3455566778899987
No 291
>PRK14017 galactonate dehydratase; Provisional
Probab=40.74 E-value=1.3e+02 Score=29.86 Aligned_cols=79 Identities=6% Similarity=-0.156 Sum_probs=57.3
Q ss_pred CCceeEEEeee-cCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-------------------CCCC---------
Q 015125 23 NGREILFQGFN-WESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF-------------------APEG--------- 73 (413)
Q Consensus 23 ~~~~~i~~~f~-~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-------------------~~~g--------- 73 (413)
++-.+++-+.. |+ .+..++.+..|+++|+..|+ =|+-... +-+.
T Consensus 176 ~~~~l~vDaN~~w~------~~~A~~~~~~l~~~~~~~iE-eP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~ 248 (382)
T PRK14017 176 PEIGIGVDFHGRVH------KPMAKVLAKELEPYRPMFIE-EPVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLE 248 (382)
T ss_pred CCCeEEEECCCCCC------HHHHHHHHHhhcccCCCeEE-CCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHH
Confidence 44457777776 55 88899999999999999888 3543221 1011
Q ss_pred CCcccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 74 YLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 74 Y~~~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
....|..+++ .+.|+..+.+++++.|+++||+++.
T Consensus 249 ~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~ 284 (382)
T PRK14017 249 AGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAP 284 (382)
T ss_pred cCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEee
Confidence 2245666666 4579999999999999999999876
No 292
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=40.69 E-value=47 Score=34.59 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=25.3
Q ss_pred cCCCeEeecccCCC------c----------------HHHHHHHHHhhCC-CeEEEcccCC
Q 015125 185 VGFQDFRFDFARGY------S----------------AKYVKEYIEGARP-IFSVGEYWDS 222 (413)
Q Consensus 185 ~gvDGfR~D~a~~i------~----------------~~~~~~~~~~~~~-~~~vgE~~~~ 222 (413)
..+|++|+|.+..+ | .++++.+..+... ..+|||-.+.
T Consensus 303 ~~~d~lRIDHf~Gf~r~w~IP~g~~ta~~G~wv~~Pg~~l~~~l~~e~~~~~~vIaEDLG~ 363 (513)
T TIGR00217 303 QYADILRIDHFRGFVSLWWVPAGESTAFNGAWVHYPGDDFFNILANESKDNLKIIGEDLGT 363 (513)
T ss_pred HhCCeEEecchhhhceeeeecCCCCCCCCCeeEeCCHHHHHHHHHHHcCCCCcEEeeeCCC
Confidence 45788999987653 2 3466666666654 5679996643
No 293
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=40.54 E-value=26 Score=34.56 Aligned_cols=70 Identities=10% Similarity=0.040 Sum_probs=42.6
Q ss_pred HHHhhhhhH-HHcCCCEEEcCCCCCCC----CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 44 NLERKVPDI-SKSGFTSVWLPPATHSF----APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 44 gi~~~L~yL-k~lGv~~I~L~Pi~~~~----~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
|....+.+. |.+||++.|+-|.-+-. -...=--.-.-.|...-+..-|+.++.+-||++|+-+|+|=.+-
T Consensus 113 GT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~a 187 (426)
T COG2873 113 GTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFA 187 (426)
T ss_pred chHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCC
Confidence 444455554 99999999998754210 00000000011233333445679999999999999999995543
No 294
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=40.29 E-value=49 Score=31.99 Aligned_cols=106 Identities=11% Similarity=0.102 Sum_probs=60.8
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH--cCCEEEEEEccccCcC
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ--HKVRAMADIVINHRVG 117 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~--~Gi~VilD~V~NH~~~ 117 (413)
.+.+.+.+..+.++||.+|.|-|+.+.. ...|-.. +-...-..+.|+++++ -.|-||.|+.+-.-..
T Consensus 56 id~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a---------~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~ 126 (324)
T PF00490_consen 56 IDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEA---------YNPDGLVQRAIRAIKKAFPDLLVITDVCLCEYTS 126 (324)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGG---------GSTTSHHHHHHHHHHHHSTTSEEEEEE-STTTBT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcc---------cCCCChHHHHHHHHHHhCCCcEEEEecccccccC
Confidence 9999999999999999999999985432 1222111 1111224445555554 4799999998875333
Q ss_pred CCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEe
Q 015125 118 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFR 191 (413)
Q Consensus 118 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR 191 (413)
.. |.. +... .+-...|.+..+.+.+...-.. +-|+|-+-
T Consensus 127 hG-----------------HcG-il~~----------------~~g~idND~Tl~~Lak~Al~~A-~AGADiVA 165 (324)
T PF00490_consen 127 HG-----------------HCG-ILDD----------------EDGEIDNDETLERLAKQALSHA-EAGADIVA 165 (324)
T ss_dssp SS-----------------SSS-EB-C----------------TTSSBEHHHHHHHHHHHHHHHH-HHT-SEEE
T ss_pred CC-----------------ceE-EEEC----------------CCCeEecHHHHHHHHHHHHHHH-HhCCCeec
Confidence 10 100 0000 1123346777888888877775 89988763
No 295
>TIGR03586 PseI pseudaminic acid synthase.
Probab=40.23 E-value=72 Score=31.15 Aligned_cols=112 Identities=10% Similarity=0.144 Sum_probs=69.3
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-----CCCCCCccc-CCCCCCCC-------CCHHHHHHHHHHHHHcCCEE
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSF-----APEGYLPQN-LYSLNSSY-------GSEHLLKALLHKMKQHKVRA 106 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-----~~~gY~~~d-~~~id~~~-------Gt~~~~~~Lv~~~h~~Gi~V 106 (413)
|+++-..+.++..++.|.++|=+-=..... ..-.|...+ .|.-.+.| =+.+++++|.+.|++.||.+
T Consensus 14 G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~ 93 (327)
T TIGR03586 14 GSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTI 93 (327)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcE
Confidence 799999999999999999987553211100 000111100 11101111 13578899999999999998
Q ss_pred EEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcC
Q 015125 107 MADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 186 (413)
Q Consensus 107 ilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~g 186 (413)
+-.. | + .+.+.+ +.++|
T Consensus 94 ~stp------------------f-------d-------------------------------------~~svd~-l~~~~ 110 (327)
T TIGR03586 94 FSSP------------------F-------D-------------------------------------ETAVDF-LESLD 110 (327)
T ss_pred EEcc------------------C-------C-------------------------------------HHHHHH-HHHcC
Confidence 7543 1 0 011223 34788
Q ss_pred CCeEeecccCCCcHHHHHHHHHhhCCCe
Q 015125 187 FQDFRFDFARGYSAKYVKEYIEGARPIF 214 (413)
Q Consensus 187 vDGfR~D~a~~i~~~~~~~~~~~~~~~~ 214 (413)
|+.+-+=+.......+++.+.+.-+|++
T Consensus 111 v~~~KI~S~~~~n~~LL~~va~~gkPvi 138 (327)
T TIGR03586 111 VPAYKIASFEITDLPLIRYVAKTGKPII 138 (327)
T ss_pred CCEEEECCccccCHHHHHHHHhcCCcEE
Confidence 8888887777777778887777766644
No 296
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=40.01 E-value=87 Score=29.79 Aligned_cols=60 Identities=7% Similarity=0.055 Sum_probs=41.4
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHH-HHHHHHHc-C
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKA-LLHKMKQH-K 103 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~-Lv~~~h~~-G 103 (413)
++|.++=.= +.+..++...+.+++|+++|.++|++ |+.. +.+++.+ +-+-|.+. +
T Consensus 72 ~viagv~~~------~~~~ai~~a~~a~~~Gad~v~~~~P~------------y~~~-----~~~~i~~~~~~v~~a~~~ 128 (288)
T cd00954 72 TLIAHVGSL------NLKESQELAKHAEELGYDAISAITPF------------YYKF-----SFEEIKDYYREIIAAAAS 128 (288)
T ss_pred eEEeccCCC------CHHHHHHHHHHHHHcCCCEEEEeCCC------------CCCC-----CHHHHHHHHHHHHHhcCC
Confidence 456666543 48999999999999999999998864 2221 2344444 44445556 7
Q ss_pred CEEEE
Q 015125 104 VRAMA 108 (413)
Q Consensus 104 i~Vil 108 (413)
+.||+
T Consensus 129 lpi~i 133 (288)
T cd00954 129 LPMII 133 (288)
T ss_pred CCEEE
Confidence 88887
No 297
>PRK04302 triosephosphate isomerase; Provisional
Probab=39.68 E-value=55 Score=29.87 Aligned_cols=64 Identities=6% Similarity=0.014 Sum_probs=39.3
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR 105 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~ 105 (413)
.++.|-+.+. ..|-+.|=+ -++.|+++|+++|.+ |-.+. .-..++..++++.|++.||.
T Consensus 58 ~v~aq~~~~~--~~G~~tg~~-~~~~l~~~G~~~vii-~~ser-----------------~~~~~e~~~~v~~a~~~Gl~ 116 (223)
T PRK04302 58 PVYAQHVDPV--EPGSHTGHI-LPEAVKDAGAVGTLI-NHSER-----------------RLTLADIEAVVERAKKLGLE 116 (223)
T ss_pred eEEeccCCCC--CCCCchhhh-HHHHHHHcCCCEEEE-ecccc-----------------ccCHHHHHHHHHHHHHCCCe
Confidence 3555555543 123333321 278888899998854 31111 11244588999999999999
Q ss_pred EEEEE
Q 015125 106 AMADI 110 (413)
Q Consensus 106 VilD~ 110 (413)
+|+++
T Consensus 117 ~I~~v 121 (223)
T PRK04302 117 SVVCV 121 (223)
T ss_pred EEEEc
Confidence 99744
No 298
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=39.56 E-value=75 Score=30.55 Aligned_cols=59 Identities=8% Similarity=0.094 Sum_probs=40.4
Q ss_pred CCCCCc--cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc---CCEEEE
Q 015125 35 ESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH---KVRAMA 108 (413)
Q Consensus 35 ~~~~~g--~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~---Gi~Vil 108 (413)
.|.++| |++++.+.++++.+.||++|.+.-- ...+..+ |.+|-+++++.+.+. .+.||.
T Consensus 18 Pf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~Gs----------tGE~~~L-----t~eEr~~~~~~~~~~~~~~~pvi~ 81 (303)
T PRK03620 18 PFDADGSFDEAAYREHLEWLAPYGAAALFAAGG----------TGEFFSL-----TPDEYSQVVRAAVETTAGRVPVIA 81 (303)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcC----------CcCcccC-----CHHHHHHHHHHHHHHhCCCCcEEE
Confidence 455666 9999999999999999999997652 1223333 466677776655432 355554
No 299
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.52 E-value=1.1e+02 Score=30.24 Aligned_cols=74 Identities=16% Similarity=0.079 Sum_probs=47.7
Q ss_pred cCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 22 RNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
+.++.+++.+-.-.--+ .+-..+.+-.+.|+.+++ .|-|.|.++... .+|. . =+.++++++.+.+.+
T Consensus 251 ~~gr~I~iey~LIpGvN-Ds~e~a~~La~~l~~l~~-~VnLIPynp~~~-~~~~-----~-----ps~e~i~~f~~~L~~ 317 (345)
T PRK14457 251 ITGRRVSFEYILLGGVN-DLPEHAEELANLLRGFQS-HVNLIPYNPIDE-VEFQ-----R-----PSPKRIQAFQRVLEQ 317 (345)
T ss_pred HhCCEEEEEEEEECCcC-CCHHHHHHHHHHHhcCCC-eEEEecCCCCCC-CCCC-----C-----CCHHHHHHHHHHHHH
Confidence 34555666655442111 235555666667777776 799999877532 2332 1 257889999999999
Q ss_pred cCCEEEE
Q 015125 102 HKVRAMA 108 (413)
Q Consensus 102 ~Gi~Vil 108 (413)
+|+.|.+
T Consensus 318 ~Gi~vtv 324 (345)
T PRK14457 318 RGVAVSV 324 (345)
T ss_pred CCCeEEE
Confidence 9999863
No 300
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=39.51 E-value=70 Score=30.51 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=26.0
Q ss_pred CCCCCc--cHHHHHhhhhhHHH-cCCCEEEcCC
Q 015125 35 ESCKHD--WWRNLERKVPDISK-SGFTSVWLPP 64 (413)
Q Consensus 35 ~~~~~g--~~~gi~~~L~yLk~-lGv~~I~L~P 64 (413)
.|.++| |++++.+.++++.+ .||++|.+.-
T Consensus 14 Pf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~G 46 (293)
T PRK04147 14 PFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGG 46 (293)
T ss_pred cCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 355566 89999999999999 9999999775
No 301
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=39.42 E-value=60 Score=32.26 Aligned_cols=79 Identities=22% Similarity=0.261 Sum_probs=57.5
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC----CCCCCCcccCCCCCCCC-----------------------------
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSF----APEGYLPQNLYSLNSSY----------------------------- 86 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~----~~~gY~~~d~~~id~~~----------------------------- 86 (413)
|.-++|.=.++-|+.-|-|.+.=-|=|+.. .++|-.+. +|++-|.-
T Consensus 134 GC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR-~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPc 212 (447)
T KOG0259|consen 134 GCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVR-YYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPC 212 (447)
T ss_pred cchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeE-eecccCcccceechHHHHHhhccCeeEEEEeCCCCCC
Confidence 567899999999999999987766655432 24443333 22222111
Q ss_pred C---CHHHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 87 G---SEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 87 G---t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
| |++-|+++++-||++||-||.|=|+.|+...+
T Consensus 213 GnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~ 248 (447)
T KOG0259|consen 213 GNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGD 248 (447)
T ss_pred cccccHHHHHHHHHHHHHhCCeEEehhhcceeecCC
Confidence 2 25779999999999999999999999998754
No 302
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=39.34 E-value=33 Score=25.50 Aligned_cols=57 Identities=19% Similarity=0.086 Sum_probs=34.5
Q ss_pred HHHc-CCCEEEcCCCCCCCCC--CCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 52 ISKS-GFTSVWLPPATHSFAP--EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 52 Lk~l-Gv~~I~L~Pi~~~~~~--~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
|.++ |+++..+.|..-.... ..-...|..-+=+.-|...+..++++.|+++|+++|.
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 20 LLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred HhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 4566 8888776552211000 1112233222335567778899999999999999874
No 303
>PRK09028 cystathionine beta-lyase; Provisional
Probab=39.26 E-value=40 Score=33.84 Aligned_cols=30 Identities=17% Similarity=0.057 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 84 SSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 84 ~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
...|...+++++++.||++|+-||+|-++-
T Consensus 157 NPtg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 157 SITMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 335778999999999999999999998775
No 304
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=39.26 E-value=91 Score=28.71 Aligned_cols=63 Identities=13% Similarity=-0.035 Sum_probs=37.8
Q ss_pred HHHhhhhhHHHcC-CCEEEcCCCCCCCC-CC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 015125 44 NLERKVPDISKSG-FTSVWLPPATHSFA-PE-GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 107 (413)
Q Consensus 44 gi~~~L~yLk~lG-v~~I~L~Pi~~~~~-~~-gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vi 107 (413)
.+.+-+..|++++ +..|.|+|.+..+. .+ .+.+. |-..+-.--+.++++++.+.+++.|++|+
T Consensus 180 ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 180 SAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGEE-YKLDGVKPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred HHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCCc-ccccCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 4444555556664 77889999877642 11 11111 01111122358999999999999999874
No 305
>PRK11059 regulatory protein CsrD; Provisional
Probab=39.16 E-value=36 Score=36.44 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=54.1
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC---CCCCCCcccCCCCCCCC--------CCHHHHHH
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSY--------GSEHLLKA 94 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~---~~~gY~~~d~~~id~~~--------Gt~~~~~~ 94 (413)
..++++=+... -.+.+.+...+..|+++|+.... -=+-.+. .+-..-+.||-.||+.| .+..-++.
T Consensus 518 ~l~~Ei~E~~~--~~~~~~~~~~l~~L~~~G~~iai-ddfG~g~~s~~~L~~l~~d~iKid~s~v~~i~~~~~~~~~v~s 594 (640)
T PRK11059 518 RLIFELAEADV--CQHISRLRPVLRMLRGLGCRLAV-DQAGLTVVSTSYIKELNVELIKLHPSLVRNIHKRTENQLFVRS 594 (640)
T ss_pred eEEEEEechhh--hcCHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHHhCCCCEEEECHHHHhhhhcCchhHHHHHH
Confidence 45555544321 13578899999999999996443 1111111 11122256666766443 22344899
Q ss_pred HHHHHHHcCCEEEEEEcccc
Q 015125 95 LLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 95 Lv~~~h~~Gi~VilD~V~NH 114 (413)
+++.||..|++||...|=+.
T Consensus 595 li~~a~~~~i~viAegVEt~ 614 (640)
T PRK11059 595 LVGACAGTETQVFATGVESR 614 (640)
T ss_pred HHHHHHHCCCeEEEEEeCCH
Confidence 99999999999999988663
No 306
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=39.12 E-value=35 Score=32.98 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEeecc---c--CCCc------HHHHHHHHHhhC
Q 015125 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDF---A--RGYS------AKYVKEYIEGAR 211 (413)
Q Consensus 166 ~~~~vr~~l~~~~~~w~~~~gvDGfR~D~---a--~~i~------~~~~~~~~~~~~ 211 (413)
.++..|+.+++.+..+++++|.||+-+|. . ...+ ..|++++.++++
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~ 144 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLH 144 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHh
Confidence 36888999999999889999999999993 1 1112 236777777664
No 307
>PF09196 DUF1953: Domain of unknown function (DUF1953); InterPro: IPR015279 This domain is found in the Archaeal protein maltooligosyl trehalose synthase produced by Sulfolobus spp. Its function has not, as yet, been defined. ; PDB: 3HJE_A 1IV8_A.
Probab=39.08 E-value=56 Score=22.81 Aligned_cols=43 Identities=26% Similarity=0.233 Sum_probs=29.4
Q ss_pred eEEEEecCCEEEEEECCEEEEEEcC-CCCCC-----CCCCcEEeeeCCc
Q 015125 365 IKILEAQSNLYSAIIGDKVCMKIGD-GSWCP-----AGKEWTLATSGHK 407 (413)
Q Consensus 365 ~~~~~~~~~~~~~~r~~~~lv~lnn-~~~~~-----~~~~~~~~~s~~~ 407 (413)
++-+...+.+..|.|.++++|++-. ++.+. -++.+++++.+..
T Consensus 2 yk~l~l~~glcgf~r~~kilviiktkgs~n~~~~~e~~~~ytdv~t~e~ 50 (66)
T PF09196_consen 2 YKGLDLEEGLCGFIRFNKILVIIKTKGSVNYKYKIEEGAIYTDVITGEE 50 (66)
T ss_dssp EEEE---TTEEEEEETTTEEEEEES-TTSSCEEEEECCEEEEETTTTEE
T ss_pred CcccchhhcceeEEecCEEEEEEecccccceeeeeccCcEEEeeecChh
Confidence 4456667889999999998888776 55543 3567888877754
No 308
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=39.07 E-value=1.1e+02 Score=29.19 Aligned_cols=30 Identities=7% Similarity=-0.106 Sum_probs=26.0
Q ss_pred CCCCCc--cHHHHHhhhhhHHHcCCCEEEcCC
Q 015125 35 ESCKHD--WWRNLERKVPDISKSGFTSVWLPP 64 (413)
Q Consensus 35 ~~~~~g--~~~gi~~~L~yLk~lGv~~I~L~P 64 (413)
.|.++| |++++.+.++++.+.||++|.++-
T Consensus 11 Pf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~G 42 (294)
T TIGR02313 11 PFKRNGDIDEEALRELIEFQIEGGSHAISVGG 42 (294)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHcCCCEEEECc
Confidence 355666 899999999999999999999765
No 309
>PRK14012 cysteine desulfurase; Provisional
Probab=39.03 E-value=87 Score=31.18 Aligned_cols=71 Identities=11% Similarity=0.235 Sum_probs=44.6
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCC-C--------CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSF-A--------PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-~--------~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
+..+..-+..++..|++.+++.+--... . ...-...-...+....|...+++++.+.||++|+.||+|-+-
T Consensus 104 ~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~ 183 (404)
T PRK14012 104 HKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQ 183 (404)
T ss_pred cHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcch
Confidence 5455445556677799888874321110 0 011111112233445788999999999999999999999974
No 310
>PLN02651 cysteine desulfurase
Probab=38.96 E-value=68 Score=31.42 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=43.7
Q ss_pred HHHhhhhhHHHcCCCEEEcCCCCCCCC----------CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 44 NLERKVPDISKSGFTSVWLPPATHSFA----------PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 44 gi~~~L~yLk~lGv~~I~L~Pi~~~~~----------~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
.....+..++..|+..+++.. -+... .......-...+...-|...+++++++.||++|+-+++|.+-
T Consensus 100 s~~~~~~~~~~~g~~v~~v~~-~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~ 177 (364)
T PLN02651 100 CVLDSCRHLQQEGFEVTYLPV-KSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQ 177 (364)
T ss_pred HHHHHHHHHHhcCCEEEEEcc-CCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 333344456677888777643 21110 111222333345566788999999999999999999999874
No 311
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=38.94 E-value=56 Score=31.74 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=47.6
Q ss_pred ccHHHHHhhhhhHHHcCC--CEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 40 DWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv--~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
-|++.+.+.++..+.-++ ..|++..++. +-| ..=+.++++++++-|.++|+-||+|-++.-...
T Consensus 130 ~d~~~l~~~l~~~~~~~~~~~~v~~~~p~n---PtG-----------~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~ 195 (363)
T PF00155_consen 130 LDPEALEEALDELPSKGPRPKAVLICNPNN---PTG-----------SVLSLEELRELAELAREYNIIIIVDEAYSDLIF 195 (363)
T ss_dssp ETHHHHHHHHHTSHTTTETEEEEEEESSBT---TTT-----------BB--HHHHHHHHHHHHHTTSEEEEEETTTTGBS
T ss_pred ccccccccccccccccccccceeeeccccc---ccc-----------cccccccccchhhhhcccccceeeeeceecccc
Confidence 378888888888877654 6666644321 112 111689999999999999999999999887666
Q ss_pred CC
Q 015125 118 TT 119 (413)
Q Consensus 118 ~~ 119 (413)
+.
T Consensus 196 ~~ 197 (363)
T PF00155_consen 196 GD 197 (363)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 312
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=38.76 E-value=2.3e+02 Score=27.94 Aligned_cols=40 Identities=13% Similarity=0.055 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
.+++++.++..+ +.|+|-+++ |++....|.-..++++.++
T Consensus 196 ~~~l~~~~~~~~-~~Gad~I~l~DT~G~a~P~~v~~lv~~l~ 236 (347)
T PLN02746 196 PSKVAYVAKELY-DMGCYEISLGDTIGVGTPGTVVPMLEAVM 236 (347)
T ss_pred HHHHHHHHHHHH-HcCCCEEEecCCcCCcCHHHHHHHHHHHH
Confidence 467888898887 899998887 7888888887777777765
No 313
>PLN02417 dihydrodipicolinate synthase
Probab=38.65 E-value=74 Score=30.18 Aligned_cols=58 Identities=9% Similarity=-0.036 Sum_probs=39.1
Q ss_pred CCCCc--cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH---cCCEEEE
Q 015125 36 SCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ---HKVRAMA 108 (413)
Q Consensus 36 ~~~~g--~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~---~Gi~Vil 108 (413)
|.++| |++++.+.++++.+.||++|.+.-- .-.+..+ |.+|-+++++.+-+ ..+.||.
T Consensus 13 f~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~Gs----------tGE~~~l-----s~~Er~~~~~~~~~~~~~~~pvi~ 75 (280)
T PLN02417 13 YLPDGRFDLEAYDSLVNMQIENGAEGLIVGGT----------TGEGQLM-----SWDEHIMLIGHTVNCFGGKIKVIG 75 (280)
T ss_pred cCCCCCcCHHHHHHHHHHHHHcCCCEEEECcc----------CcchhhC-----CHHHHHHHHHHHHHHhCCCCcEEE
Confidence 45556 8999999999999999999997651 1223444 36666666665443 2255553
No 314
>PRK08114 cystathionine beta-lyase; Provisional
Probab=38.62 E-value=53 Score=32.98 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=51.0
Q ss_pred ccCCceeEEEeeecCCCCCccHHHHHhhh-hhHHHcCCCEEEcCCCCCC----CCCCCCCcccCCCCCCCCCCHHHHHHH
Q 015125 21 IRNGREILFQGFNWESCKHDWWRNLERKV-PDISKSGFTSVWLPPATHS----FAPEGYLPQNLYSLNSSYGSEHLLKAL 95 (413)
Q Consensus 21 ~~~~~~~i~~~f~~~~~~~g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~----~~~~gY~~~d~~~id~~~Gt~~~~~~L 95 (413)
+++|..+++.- . -+.+...-+ ..|++.||+..++.|.-.. .-...-...-.-.+..-.|...+++++
T Consensus 98 l~~GD~Vv~~~-----~---~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~I 169 (395)
T PRK08114 98 VEQGDHVLMTG-----T---AYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAI 169 (395)
T ss_pred cCCCCEEEEeC-----C---CcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHH
Confidence 56666666541 1 133333333 4678899999998763110 001111222223344556777899999
Q ss_pred HHHHHHcC--CEEEEEEcc
Q 015125 96 LHKMKQHK--VRAMADIVI 112 (413)
Q Consensus 96 v~~~h~~G--i~VilD~V~ 112 (413)
++.||++| +.||+|-++
T Consensus 170 a~ia~~~g~g~~lvVDnT~ 188 (395)
T PRK08114 170 VAAVRSVNPDAVIMIDNTW 188 (395)
T ss_pred HHHHHHhCCCCEEEEECCC
Confidence 99999985 999999865
No 315
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.49 E-value=90 Score=30.85 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=46.1
Q ss_pred CCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 23 NGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
.++.+.+.+..=.--+ .+.+.+.+-.+.+++++ ..|.|.|.++.+. ..|.. -+++.+.++.+.++++
T Consensus 259 ~~~~v~iey~lI~gvN-Ds~ed~~~La~ll~~l~-~~VnLIPynp~~~-~ky~~----------ps~e~l~~f~~~L~~~ 325 (356)
T PRK14455 259 TNRRVTFEYILLGGVN-DQVEHAEELADLLKGIK-CHVNLIPVNPVPE-RDYVR----------TPKEDIFAFEDTLKKN 325 (356)
T ss_pred cCCeEEEEEEEeCCCC-CCHHHHHHHHHHHhcCC-CcEEEEecCcCCC-CCCcC----------CCHHHHHHHHHHHHHC
Confidence 3455666554432111 13455555666677776 4688888776532 23332 3578899999999999
Q ss_pred CCEEEE
Q 015125 103 KVRAMA 108 (413)
Q Consensus 103 Gi~Vil 108 (413)
|+.|.+
T Consensus 326 gi~v~i 331 (356)
T PRK14455 326 GVNCTI 331 (356)
T ss_pred CCcEEE
Confidence 999865
No 316
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=38.48 E-value=1.8e+02 Score=26.55 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 172 KDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
+++.+.++... +.|+|.+++ |++..+.|....+++..++
T Consensus 137 ~~~~~~~~~~~-~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~ 176 (237)
T PF00682_consen 137 EELLELAEALA-EAGADIIYLADTVGIMTPEDVAELVRALR 176 (237)
T ss_dssp HHHHHHHHHHH-HHT-SEEEEEETTS-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCeEEEeeCccCCcCHHHHHHHHHHHH
Confidence 57778888886 889999987 6778888888888877765
No 317
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=38.43 E-value=1.2e+02 Score=28.33 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=41.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYG-SEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~G-t~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.++-+...++.-+.||+..|-+.|... +|... -+..+- ..+.+++|++.|.++||++.+.-
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~-----~~~~~----~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHA-----GYLTP----PNVIWGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCC-----CCCCC----HHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 456777788899999999998887532 22111 000000 12458999999999999999984
No 318
>PRK05942 aspartate aminotransferase; Provisional
Probab=38.37 E-value=80 Score=31.34 Aligned_cols=29 Identities=3% Similarity=0.177 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
+.++++++++-|+++|+-||.|-++-...
T Consensus 188 s~~~~~~i~~~a~~~~~~iI~De~y~~~~ 216 (394)
T PRK05942 188 PREFFEEIVAFARKYEIMLVHDLCYAELA 216 (394)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccchhhc
Confidence 47899999999999999999999876543
No 319
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=38.35 E-value=95 Score=29.44 Aligned_cols=36 Identities=3% Similarity=-0.223 Sum_probs=29.5
Q ss_pred ceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCC
Q 015125 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT 66 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~ 66 (413)
-++|.++=.= +.+..++...+.+++|+++|.++|++
T Consensus 68 ~~vi~gv~~~------s~~~~i~~a~~a~~~Gad~v~v~pP~ 103 (285)
T TIGR00674 68 VPVIAGTGSN------ATEEAISLTKFAEDVGADGFLVVTPY 103 (285)
T ss_pred CeEEEeCCCc------cHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 3567776443 48999999999999999999999964
No 320
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=38.35 E-value=23 Score=33.77 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 86 YGSEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 86 ~Gt~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
.|...+++++++.||++|+.||+|-+
T Consensus 166 ~G~~~dl~~I~~~~~~~g~~livDeA 191 (294)
T cd00615 166 YGICYNLRKIVEEAHHRGLPVLVDEA 191 (294)
T ss_pred CCEecCHHHHHHHHHhcCCeEEEECc
Confidence 58888999999999999999999987
No 321
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=38.05 E-value=41 Score=30.89 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=29.2
Q ss_pred HcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 015125 54 KSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMAD 109 (413)
Q Consensus 54 ~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD 109 (413)
+.||.+|-+-| +--|+.+-.++||++||..|+.-++-
T Consensus 227 e~gv~avVIKP-------------------TL~GSl~r~~eli~qAh~lGl~AVIS 263 (321)
T COG1441 227 EPGVRAVVIKP-------------------TLTGSLQRVRELVQQAHALGLTAVIS 263 (321)
T ss_pred CCCceEEEecc-------------------cchhhHHHHHHHHHHHHhcCceeEee
Confidence 56677776666 23478999999999999999987764
No 322
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=37.67 E-value=79 Score=32.90 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=17.7
Q ss_pred cCCcceecccCCCCCcCCCCCCCC
Q 015125 288 WPSRAVTFLDNHDTGSTQAHWPFP 311 (413)
Q Consensus 288 ~p~~~v~flenHD~~R~~~~~~~~ 311 (413)
.|.+.|.++.+||++.+..-+.+.
T Consensus 393 ~~~nsva~tsTHD~ptl~gww~~~ 416 (520)
T COG1640 393 YPPNSVATTSTHDLPTLRGWWEEL 416 (520)
T ss_pred cccceeEEeccCCChhHHHHHhCC
Confidence 455788999999999876655433
No 323
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=37.59 E-value=56 Score=33.89 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=40.4
Q ss_pred hhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 47 ~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
+.|..+++.|++.|.+.- ++. +..-+..++.. .+.++..+.|+.++++||.+.+++++.-
T Consensus 288 ell~~l~~aG~~~v~iGi--ES~-----~~~~L~~~~K~-~t~~~~~~ai~~l~~~Gi~~~~~~I~G~ 347 (497)
T TIGR02026 288 DILHLYRRAGLVHISLGT--EAA-----AQATLDHFRKG-TTTSTNKEAIRLLRQHNILSEAQFITGF 347 (497)
T ss_pred HHHHHHHHhCCcEEEEcc--ccC-----CHHHHHHhcCC-CCHHHHHHHHHHHHHCCCcEEEEEEEEC
Confidence 456666777777776632 221 11222334433 3678899999999999999999999874
No 324
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=37.26 E-value=41 Score=32.60 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 166 ~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
.+++.|+.+++.+..|++++|+||+-+|--
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDwE 134 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDWE 134 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECCc
Confidence 368889999999998899999999999953
No 325
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=37.19 E-value=71 Score=27.92 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=32.0
Q ss_pred hhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 48 KVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 48 ~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
..+-|+..|+++|.+== .. + +-.-+...+| +++++.++++++.||+|++
T Consensus 19 ~~~~L~~~Gikgvi~Dl--DN--------T-Lv~wd~~~~t-pe~~~W~~e~k~~gi~v~v 67 (175)
T COG2179 19 TPDILKAHGIKGVILDL--DN--------T-LVPWDNPDAT-PELRAWLAELKEAGIKVVV 67 (175)
T ss_pred CHHHHHHcCCcEEEEec--cC--------c-eecccCCCCC-HHHHHHHHHHHhcCCEEEE
Confidence 35678899999997410 00 0 0111233344 4599999999999999985
No 326
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=37.11 E-value=69 Score=29.30 Aligned_cols=49 Identities=12% Similarity=0.311 Sum_probs=32.3
Q ss_pred HHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 44 gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+.+-|.+.+++|+++|.++- |.-+. +.++.++||+.+-+.|..|.-.+
T Consensus 91 kvdeyl~e~~~lGfe~iEIS~--------G~i~m----------~~eek~~lIe~a~d~Gf~vlsEv 139 (258)
T COG1809 91 KVDEYLNEAKELGFEAIEISN--------GTIPM----------STEEKCRLIERAVDEGFMVLSEV 139 (258)
T ss_pred cHHHHHHHHHHcCccEEEecC--------Ceeec----------chHHHHHHHHHHHhcccEEehhh
Confidence 344455566666666666542 21111 36789999999999999886543
No 327
>PLN02428 lipoic acid synthase
Probab=36.96 E-value=1.4e+02 Score=29.38 Aligned_cols=62 Identities=10% Similarity=0.014 Sum_probs=47.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
+.+.+.+.++.|+++|++.+-+.... .++.. +..| .+|=++++|+++-+.+-+.|.+-|.-.
T Consensus 260 T~Edv~e~l~~Lrelgvd~vtigqyL-~Ps~~------h~~v-~~~v~p~~f~~~~~~~~~~gf~~v~sg 321 (349)
T PLN02428 260 TDEEVVQTMEDLRAAGVDVVTFGQYL-RPTKR------HLPV-KEYVTPEKFEFWREYGEEMGFRYVASG 321 (349)
T ss_pred CHHHHHHHHHHHHHcCCCEEeecccc-CCCcc------eeee-ecccCHHHHHHHHHHHHHcCCceEEec
Confidence 79999999999999999999776543 11221 2333 467789999999999999998766533
No 328
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=36.89 E-value=1.5e+02 Score=25.31 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=46.5
Q ss_pred CceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc-
Q 015125 24 GREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH- 102 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~- 102 (413)
+..+++|.+.-+ ..+-+......++++|++.|+|..-. +|. .+...+++++++++
T Consensus 57 ~~~~~~~~~~~~-----~~~~~~~~a~~~~~~g~d~v~l~~~~------~~~-------------~~~~~~~~~~i~~~~ 112 (200)
T cd04722 57 DLPLGVQLAIND-----AAAAVDIAAAAARAAGADGVEIHGAV------GYL-------------AREDLELIRELREAV 112 (200)
T ss_pred CCcEEEEEccCC-----chhhhhHHHHHHHHcCCCEEEEeccC------CcH-------------HHHHHHHHHHHHHhc
Confidence 346788888755 22222222467899999999987632 221 57788888888887
Q ss_pred -CCEEEEEEcccc
Q 015125 103 -KVRAMADIVINH 114 (413)
Q Consensus 103 -Gi~VilD~V~NH 114 (413)
++.|+..+....
T Consensus 113 ~~~~v~~~~~~~~ 125 (200)
T cd04722 113 PDVKVVVKLSPTG 125 (200)
T ss_pred CCceEEEEECCCC
Confidence 999999986653
No 329
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=36.80 E-value=42 Score=32.92 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=38.2
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
.+.|..||+.|++.+..+ +..-++..=+..+.|.--+.++-.+.++.||+.||+|-.=+.+.|-
T Consensus 141 ~e~l~~LkeAGl~~i~~~------~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~ 204 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGT------AAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHV 204 (343)
T ss_pred HHHHHHHHHhCcccccCc------chhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecC
Confidence 455666666666665410 0001111111234443336778899999999999999887777764
No 330
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=36.75 E-value=69 Score=27.86 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=39.6
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcC-CEEEEEEccccC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK-VRAMADIVINHR 115 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~G-i~VilD~V~NH~ 115 (413)
.+.++.|+++|++.|.++.=.-.+ .- .+ .+. .-++.+.+.+.++.+++.| +.|-+.++++..
T Consensus 100 ~~~~~~l~~~~~~~i~isl~~~~~--~~---~~--~~~-~~~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~ 162 (216)
T smart00729 100 EELLEALKEAGVNRVSLGVQSGSD--EV---LK--AIN-RGHTVEDVLEAVEKLREAGPIKVSTDLIVGLP 162 (216)
T ss_pred HHHHHHHHHcCCCeEEEecccCCH--HH---HH--Hhc-CCCCHHHHHHHHHHHHHhCCcceEEeEEecCC
Confidence 345666667777766665422111 00 11 122 2245789999999999999 899999888764
No 331
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=36.75 E-value=1.4e+02 Score=28.86 Aligned_cols=103 Identities=12% Similarity=0.107 Sum_probs=62.6
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH--cCCEEEEEEccccCcCCC
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ--HKVRAMADIVINHRVGTT 119 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~--~Gi~VilD~V~NH~~~~~ 119 (413)
.+.+.+.+..+.++||.+|-|-|+-+.....|= .+.++. | -+.+-|+.+++ -.|-||-|+.+..-...
T Consensus 58 ~d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~gs-----~A~~~~-g---~v~rair~iK~~~p~l~vi~DVcLc~YT~h- 127 (323)
T PRK09283 58 IDLLVKEAEEAVELGIPAVALFGVPELKDEDGS-----EAYNPD-G---LVQRAIRAIKKAFPELGVITDVCLDEYTSH- 127 (323)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCcCCCCCcccc-----cccCCC-C---HHHHHHHHHHHhCCCcEEEEeeeccCCCCC-
Confidence 999999999999999999999999222111121 111121 1 24444444444 48999999988753331
Q ss_pred CCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeE
Q 015125 120 QGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDF 190 (413)
Q Consensus 120 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGf 190 (413)
.+| .. +.. =...|.+..+.+.+...-.. +-|+|-+
T Consensus 128 ------------------GHc--Gi------------l~~---g~idND~Tl~~L~~~Al~~A-~AGaDiV 162 (323)
T PRK09283 128 ------------------GHC--GI------------LED---GYVDNDETLELLAKQALSQA-EAGADIV 162 (323)
T ss_pred ------------------Cce--ec------------ccC---CcCcCHHHHHHHHHHHHHHH-HhCCCEE
Confidence 111 00 000 12237777788887777775 8888765
No 332
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=36.65 E-value=43 Score=32.70 Aligned_cols=31 Identities=10% Similarity=0.103 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 84 SSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 84 ~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
|.-.+.++..+.++.||+.||+|..-+++.|
T Consensus 175 ~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl 205 (340)
T TIGR03699 175 PKKISSEEWLEVMETAHKLGLPTTATMMFGH 205 (340)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCccceeEeeC
Confidence 4556888999999999999999999999997
No 333
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=36.65 E-value=52 Score=26.52 Aligned_cols=59 Identities=12% Similarity=-0.076 Sum_probs=35.6
Q ss_pred hhhHHHcC-CCEEEcCCCCCCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 49 VPDISKSG-FTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 49 L~yLk~lG-v~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
-.+|..+| +.+....| .+.. ....-.+.|..=+=+.-|...+..+.++.|+++|++||.
T Consensus 18 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 18 KYLLERLAGIPVEVEAA-SEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred HHHHHHhcCCceEEEeh-hHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEE
Confidence 34566776 66665542 2211 011122333322336668888899999999999999885
No 334
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=36.60 E-value=76 Score=30.84 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=42.1
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEEccc
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV-RAMADIVIN 113 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi-~VilD~V~N 113 (413)
+.+.++.|++.|++.|-++= ++.++.-|-.+. +-|+.+...+.++.|.+.|+ .|-+..|+.
T Consensus 103 l~~~~~~L~~aGl~~v~ISl-------Ds~~~e~~~~i~-~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~ 164 (329)
T PRK13361 103 LARFAAELADAGLKRLNISL-------DTLRPELFAALT-RNGRLERVIAGIDAAKAAGFERIKLNAVIL 164 (329)
T ss_pred HHHHHHHHHHcCCCeEEEEe-------ccCCHHHhhhhc-CCCCHHHHHHHHHHHHHcCCCceEEEEEEE
Confidence 34567778888888776632 233443344443 35788899999999999999 788887753
No 335
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=36.55 E-value=5.4e+02 Score=27.45 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
.+++.+.++... +.|+|-+++ |++..+.+.-..+++++++
T Consensus 154 ~~~~~~~a~~l~-~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk 194 (593)
T PRK14040 154 LQTWVDLAKQLE-DMGVDSLCIKDMAGLLKPYAAYELVSRIK 194 (593)
T ss_pred HHHHHHHHHHHH-HcCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence 678888898886 899999886 8888888887777777665
No 336
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=36.36 E-value=2.4e+02 Score=26.57 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhcCCCeEe-ecccCCCcHHHHHHHHHhhCC
Q 015125 172 KDIIAWLRWLRNTVGFQDFR-FDFARGYSAKYVKEYIEGARP 212 (413)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfR-~D~a~~i~~~~~~~~~~~~~~ 212 (413)
+++.+.++... +.|+|.++ .|++....|..+.++.+.++.
T Consensus 151 ~~~~~~~~~~~-~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~ 191 (273)
T cd07941 151 EYALATLKAAA-EAGADWLVLCDTNGGTLPHEIAEIVKEVRE 191 (273)
T ss_pred HHHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 56778888876 88999988 488888888888888777653
No 337
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=36.35 E-value=52 Score=32.76 Aligned_cols=63 Identities=14% Similarity=0.045 Sum_probs=42.7
Q ss_pred hhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 47 ~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
++|..|+++|||.|.|.-= + .+..-+-.++ +--+.++..+.++.+++.++.|-+|+.++--+.
T Consensus 105 e~L~~l~~~GvnrislGvQ--S-----~~d~vL~~l~-R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgq 167 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLGVQ--A-----LNDADLRFLG-RLHSVAEALAAIDLAREIFPRVSFDLIYARPGQ 167 (380)
T ss_pred HHHHHHHHcCCCEEEEecc--c-----CCHHHHHHcC-CCCCHHHHHHHHHHHHHhCccEEEEeecCCCCC
Confidence 7777888888888876430 0 0111122333 334678888899999999999999999885444
No 338
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=36.19 E-value=1.4e+02 Score=28.77 Aligned_cols=63 Identities=13% Similarity=0.136 Sum_probs=41.3
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
+.+.+.+.+..+++.|++.|=+.--..... +.+ ......=+.++|++++++||++|+.|.+=.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~-----~~~--~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLS-----PGD--PPPDTQFSEEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCC-----CCC--CCcccCcCHHHHHHHHHHHHHcCCEEEEEe
Confidence 477788899999999999986543111000 011 011112258899999999999999987543
No 339
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=36.01 E-value=49 Score=32.92 Aligned_cols=31 Identities=13% Similarity=-0.004 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 83 d~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
....|...+++++++.||++|+.||+|-+.-
T Consensus 145 ~Np~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 145 SSITFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 3445889999999999999999999998765
No 340
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=35.97 E-value=3.3e+02 Score=27.03 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcCC
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVGT 118 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~ 118 (413)
.+.|+++++++|++|-++++=+ +|.|..
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL--~H~Gr~ 109 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQL--WHAGRK 109 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEe--ccCccc
Confidence 5789999999999999999876 899964
No 341
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=35.82 E-value=47 Score=32.46 Aligned_cols=64 Identities=8% Similarity=0.079 Sum_probs=44.4
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
|.+....+..|++. ..+.+.--+..+..-+-...|.+-+.|. -..+=...+++.|++++|.|++
T Consensus 8 ~s~~~~~i~~lr~~--~~~~i~~sh~~~~~~~~~~aD~~~~eP~-~~~~yv~~~l~~C~~~~Idv~~ 71 (329)
T PF15632_consen 8 FSSQRDIIRSLRAN--RDFTIIASHRDPRAPILYAADEAYLEPA-DGEEYVDWCLDFCKEHGIDVFV 71 (329)
T ss_pred CccHHHHHHHHHcC--CCeEEEEEeCCCCchHHhcCceeeecCC-CHHHHHHHHHHHHHHhCCeEEE
Confidence 77888888888887 3333323233333445667888888899 3344467788999999999986
No 342
>PRK13561 putative diguanylate cyclase; Provisional
Probab=35.59 E-value=56 Score=34.94 Aligned_cols=67 Identities=13% Similarity=0.269 Sum_probs=48.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCC-----------CcccCCCCCCCC-----CCHHHHHHHHHHHHHcCC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGY-----------LPQNLYSLNSSY-----GSEHLLKALLHKMKQHKV 104 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY-----------~~~d~~~id~~~-----Gt~~~~~~Lv~~~h~~Gi 104 (413)
+.+.+.+.+..|+++||..-. +.. ..|| -|.|+-.||..| .+..-++.+++-||..||
T Consensus 532 ~~~~~~~~~~~l~~~G~~i~l-----ddf-G~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i 605 (651)
T PRK13561 532 DPHAAVAILRPLRNAGVRVAL-----DDF-GMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNL 605 (651)
T ss_pred CHHHHHHHHHHHHHCCCEEEE-----ECC-CCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCC
Confidence 578889999999999996443 111 1122 356777777333 345679999999999999
Q ss_pred EEEEEEccc
Q 015125 105 RAMADIVIN 113 (413)
Q Consensus 105 ~VilD~V~N 113 (413)
+||...|=+
T Consensus 606 ~viAegVE~ 614 (651)
T PRK13561 606 QVIAEGVET 614 (651)
T ss_pred cEEEecCCC
Confidence 999998755
No 343
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=35.56 E-value=2.8e+02 Score=25.99 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhCC
Q 015125 172 KDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGARP 212 (413)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~~ 212 (413)
+++.+.++... +.|+|.+++ |++..+.|.-..+++..++.
T Consensus 141 ~~l~~~~~~~~-~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~ 181 (262)
T cd07948 141 VDLLRVYRAVD-KLGVNRVGIADTVGIATPRQVYELVRTLRG 181 (262)
T ss_pred HHHHHHHHHHH-HcCCCEEEECCcCCCCCHHHHHHHHHHHHH
Confidence 45667777775 889998876 77788888888888777763
No 344
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=35.52 E-value=1.5e+02 Score=28.66 Aligned_cols=36 Identities=8% Similarity=0.049 Sum_probs=30.8
Q ss_pred ceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCC
Q 015125 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT 66 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~ 66 (413)
-+||+++=.-+ .+..++...+.+++|+++|.++|++
T Consensus 78 vpvi~Gv~~~~------t~~ai~~a~~A~~~Gad~vlv~~P~ 113 (309)
T cd00952 78 VPVFVGATTLN------TRDTIARTRALLDLGADGTMLGRPM 113 (309)
T ss_pred CCEEEEeccCC------HHHHHHHHHHHHHhCCCEEEECCCc
Confidence 35688877656 8999999999999999999999974
No 345
>TIGR03620 F420_MSMEG_4141 probable F420-dependent oxidoreductase, MSMEG_4141 family. Members of this protein family, related to F420-dependent oxidoreductases within the larger family of a bacterial luciferase (an FMN-dependent enzyme), occurs only within the small subset of species that synthesize F420. Most such proteins are from members of the Actinobacteria, but at least one species, Sphingomonas wittichii, belongs to the Alphaproteobacteria.
Probab=35.36 E-value=46 Score=31.66 Aligned_cols=43 Identities=12% Similarity=0.025 Sum_probs=33.4
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLH 97 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~ 97 (413)
|+-+.+.++|..++++|++.|.|.|.-. +|.+...++|+.+..
T Consensus 234 Gtp~ev~e~l~~~~~aGvd~l~l~~~~~---------------~~~~~~~~~~~~~~~ 276 (278)
T TIGR03620 234 GDADTVAARVREHLDAGADHVAVQVLTD---------------DPTPLPREQWRELAG 276 (278)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEecCC---------------CCCcCHHHHHHHHhh
Confidence 4899999999999999999999999532 234456677776543
No 346
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=35.25 E-value=1.3e+02 Score=28.86 Aligned_cols=66 Identities=14% Similarity=0.314 Sum_probs=47.2
Q ss_pred EeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-----CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc--
Q 015125 30 QGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF-----APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH-- 102 (413)
Q Consensus 30 ~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-----~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~-- 102 (413)
-.|.|+ .+.+.+.+..+.+|||.+|-|-||-+.. ++..|++.. -.++-|+++++.
T Consensus 54 gv~r~s------~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~g------------ivqravr~ik~~~p 115 (330)
T COG0113 54 GVYRYS------LDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDG------------IVQRAVRAIKEAFP 115 (330)
T ss_pred Cceecc------HHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCC------------hHHHHHHHHHHhCC
Confidence 356666 9999999999999999999999987542 223333331 245555555542
Q ss_pred CCEEEEEEccc
Q 015125 103 KVRAMADIVIN 113 (413)
Q Consensus 103 Gi~VilD~V~N 113 (413)
.+-||-|+.+.
T Consensus 116 ~l~iitDvcLc 126 (330)
T COG0113 116 ELVVITDVCLC 126 (330)
T ss_pred CeEEEeeeccc
Confidence 78999999876
No 347
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=35.24 E-value=1.2e+02 Score=28.86 Aligned_cols=51 Identities=10% Similarity=0.065 Sum_probs=35.7
Q ss_pred CCCCc--cHHHHHhhhhhHHHcC-CCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 36 SCKHD--WWRNLERKVPDISKSG-FTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 36 ~~~~g--~~~gi~~~L~yLk~lG-v~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
|+++| |++++.+.++++.+.| +++|.+.-- ...++.+ |.+|-+++++.+-+
T Consensus 12 f~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~Gs----------tGE~~~L-----t~eEr~~~~~~~~~ 65 (290)
T TIGR00683 12 FNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGS----------TGENFML-----STEEKKEIFRIAKD 65 (290)
T ss_pred CCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCc----------ccccccC-----CHHHHHHHHHHHHH
Confidence 45565 8999999999999999 999997651 1223333 46666666665443
No 348
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=35.06 E-value=1.4e+02 Score=29.42 Aligned_cols=75 Identities=19% Similarity=0.191 Sum_probs=47.2
Q ss_pred CceeEEEeeecCCCCCccHHHHHhhhhhHHHcC----CCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 015125 24 GREILFQGFNWESCKHDWWRNLERKVPDISKSG----FTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKM 99 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lG----v~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~ 99 (413)
++.+.+.+-.=.--+| +-..+.+-++++++++ +..|.|.|.++.... +.+|-. =+.++++++.+.+
T Consensus 246 ~~~V~iry~LI~GvND-s~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~----~~~~~~-----ps~e~v~~f~~~L 315 (347)
T PRK14453 246 GRKVYIAYIMLEGVND-SKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKT----PFKFQS-----SSAGQIKQFCSTL 315 (347)
T ss_pred CCcEEEEEEeECCCCC-CHHHHHHHHHHHhhccccCCcceEEEecCCCCCCC----CccCCC-----CCHHHHHHHHHHH
Confidence 4455554443321112 4556666677777774 578999998776431 111212 2588999999999
Q ss_pred HHcCCEEEE
Q 015125 100 KQHKVRAMA 108 (413)
Q Consensus 100 h~~Gi~Vil 108 (413)
.++|+.|.+
T Consensus 316 ~~~Gi~vti 324 (347)
T PRK14453 316 KSAGISVTV 324 (347)
T ss_pred HHCCCcEEE
Confidence 999999874
No 349
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=34.96 E-value=3.8e+02 Score=25.03 Aligned_cols=73 Identities=14% Similarity=0.015 Sum_probs=46.1
Q ss_pred CCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCccc--CCCCCCCCCCHHHHHHHHHHHHHc--CCEEEEEEc
Q 015125 38 KHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQN--LYSLNSSYGSEHLLKALLHKMKQH--KVRAMADIV 111 (413)
Q Consensus 38 ~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d--~~~id~~~Gt~~~~~~Lv~~~h~~--Gi~VilD~V 111 (413)
++-+++...+.+.-|.+.|+|.|+|-=+|.-|...|=-+.. ..++ .+--+.+++-+++++.++. .+.+++=.+
T Consensus 19 G~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al-~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y 95 (256)
T TIGR00262 19 GDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRAL-RAGMTPEKCFELLKKVRQKHPNIPIGLLTY 95 (256)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHH-HcCCCHHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 34478888888999999999999997666665544422211 1222 2223456777888888765 554443333
No 350
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=34.76 E-value=77 Score=27.55 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=37.5
Q ss_pred hhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 50 PDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 50 ~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
..|..+|+++..+...... .-...|..-+=+.-|...+..++++.||++|++||+
T Consensus 50 ~~l~~~g~~~~~~~~~~~~----~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 50 MRLMHLGFNVYVVGETTTP----SIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred HHHHhCCCeEEEeCCcccC----CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 3467899999887654311 112223222225668889999999999999999975
No 351
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=34.65 E-value=71 Score=28.76 Aligned_cols=64 Identities=13% Similarity=0.203 Sum_probs=48.0
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEc-----CCCCCCC-----------CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015125 40 DWWRNLERKVPDISKSGFTSVWL-----PPATHSF-----------APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L-----~Pi~~~~-----------~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~G 103 (413)
-+|..+++.+.....-|+++=.+ .||+... +-+|+-+.|. .+|+-..|.++|+++|
T Consensus 77 ~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDl--------PpEEa~~~Rne~~k~g 148 (268)
T KOG4175|consen 77 TTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDL--------PPEEAETLRNEARKHG 148 (268)
T ss_pred CcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccC--------ChHHHHHHHHHHHhcC
Confidence 38999999999999999987332 4666543 3567666652 3677888999999999
Q ss_pred CEEEEEEc
Q 015125 104 VRAMADIV 111 (413)
Q Consensus 104 i~VilD~V 111 (413)
|.+|.=+.
T Consensus 149 islvpLva 156 (268)
T KOG4175|consen 149 ISLVPLVA 156 (268)
T ss_pred ceEEEeeC
Confidence 99887543
No 352
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=34.59 E-value=47 Score=32.17 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEeecccCCCc--------HHHHHHHHHhhC
Q 015125 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS--------AKYVKEYIEGAR 211 (413)
Q Consensus 166 ~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~--------~~~~~~~~~~~~ 211 (413)
.++..|+.+++.+..|++++|.||+-+|--.... ..|++++.+.++
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~ 140 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALD 140 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999543221 235666666553
No 353
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=34.54 E-value=1.6e+02 Score=28.03 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=24.9
Q ss_pred CCCCc--cHHHHHhhhhhHHHc-CCCEEEcCC
Q 015125 36 SCKHD--WWRNLERKVPDISKS-GFTSVWLPP 64 (413)
Q Consensus 36 ~~~~g--~~~gi~~~L~yLk~l-Gv~~I~L~P 64 (413)
|.++| |++++...++++.+. |+++|.+.-
T Consensus 12 f~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~G 43 (288)
T cd00954 12 FDENGEINEDVLRAIVDYLIEKQGVDGLYVNG 43 (288)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCEEEECc
Confidence 44555 899999999999999 999998765
No 354
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.53 E-value=2.6e+02 Score=27.67 Aligned_cols=72 Identities=7% Similarity=0.052 Sum_probs=40.8
Q ss_pred HHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 43 RNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 43 ~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
+..++.....++=|+..|.+-....+.. ..++ +.. -.+... .-.+.|++|++++|++|-++++=+ +|.|...
T Consensus 33 ~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~-~~~-~~~~~d-~~i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr~~ 105 (361)
T cd04747 33 QDVAAYYRRRAAGGVGLIITEGTAVDHPAASGD-PNV-PRFHGE-DALAGWKKVVDEVHAAGGKIAPQL--WHVGAMR 105 (361)
T ss_pred HHHHHHHHHHhcCCccEEEecceEeccccccCC-CCC-CccCCH-HHHHHHHHHHHHHHhcCCEEEEec--cCCCCCc
Confidence 3444444445555777776644333211 1111 110 011100 125789999999999999999877 8887754
No 355
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=34.50 E-value=1.2e+02 Score=30.90 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=40.9
Q ss_pred HhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcC-CEEEEEEccccCcC
Q 015125 46 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK-VRAMADIVINHRVG 117 (413)
Q Consensus 46 ~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~G-i~VilD~V~NH~~~ 117 (413)
.++|..|++.|||.|.|.- ... +..-...++ +.-+.++..+.++.+++.| +.|.+|+++..-+.
T Consensus 163 ~e~l~~l~~aGvnRiSiGV-QSf------~d~vLk~lg-R~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgq 227 (449)
T PRK09058 163 DEKADAALDAGANRFSIGV-QSF------NTQVRRRAG-RKDDREEVLARLEELVARDRAAVVCDLIFGLPGQ 227 (449)
T ss_pred HHHHHHHHHcCCCEEEecC-CcC------CHHHHHHhC-CCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCC
Confidence 3566667777777766532 111 111111222 3336788999999999999 89999999986554
No 356
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=34.49 E-value=94 Score=30.11 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=41.4
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEEccc
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV-RAMADIVIN 113 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi-~VilD~V~N 113 (413)
+.+.++.|++.|++.|.++- ++.++.-|..+... ++.+.+.+-++.|.+.|+ .|.+-.|+-
T Consensus 107 l~~~~~~L~~agl~~i~ISl-------ds~~~e~~~~i~~~-~~~~~vl~~i~~~~~~g~~~v~i~~vv~ 168 (331)
T PRK00164 107 LARRAAALKDAGLDRVNVSL-------DSLDPERFKAITGR-DRLDQVLAGIDAALAAGLTPVKVNAVLM 168 (331)
T ss_pred HHHHHHHHHHcCCCEEEEEe-------ccCCHHHhccCCCC-CCHHHHHHHHHHHHHCCCCcEEEEEEEE
Confidence 34567778888888777654 22233334444333 678899999999999998 777776653
No 357
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=34.45 E-value=1.5e+02 Score=28.41 Aligned_cols=94 Identities=12% Similarity=0.102 Sum_probs=57.0
Q ss_pred hhHHHcCCCEEEcCCCCCCC---CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcc
Q 015125 50 PDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKY 126 (413)
Q Consensus 50 ~yLk~lGv~~I~L~Pi~~~~---~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y 126 (413)
.+.++-|++.|-|.=+.... ..|+- . ....+...+++-|++|+++|.+||+=+ |.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g----~----~~~~~~~~~~~~i~~lk~~G~kViiS~-----GG--------- 76 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGG----S----YPLDQGGWIKSDIAALRAAGGDVIVSF-----GG--------- 76 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCC----C----CCcccchhHHHHHHHHHHcCCeEEEEe-----cC---------
Confidence 46677899999886332221 11210 0 112246678889999999999999843 11
Q ss_pred cccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccCC
Q 015125 127 NRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARG 197 (413)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~ 197 (413)
|.... + .. +..-++.+.+.+..+++.||+||+=||-=..
T Consensus 77 ---------~~g~~----------------~---~~----~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~ 115 (294)
T cd06543 77 ---------ASGTP----------------L---AT----SCTSADQLAAAYQKVIDAYGLTHLDFDIEGG 115 (294)
T ss_pred ---------CCCCc----------------c---cc----CcccHHHHHHHHHHHHHHhCCCeEEEeccCC
Confidence 00000 0 00 2233667777777778899999999986443
No 358
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=34.36 E-value=60 Score=30.34 Aligned_cols=77 Identities=12% Similarity=0.158 Sum_probs=53.5
Q ss_pred eeEEEeee-cCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-----------------CCCCC-----------Cc
Q 015125 26 EILFQGFN-WESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF-----------------APEGY-----------LP 76 (413)
Q Consensus 26 ~~i~~~f~-~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-----------------~~~gY-----------~~ 76 (413)
.+++-+.. |+ .+..++.+..|+++|+..|+- |+.... ...=+ ..
T Consensus 131 ~l~vDan~~~~------~~~a~~~~~~l~~~~i~~iEe-P~~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~ 203 (265)
T cd03315 131 ELRVDANRGWT------PKQAIRALRALEDLGLDYVEQ-PLPADDLEGRAALARATDTPIMADESAFTPHDAFRELALGA 203 (265)
T ss_pred EEEEeCCCCcC------HHHHHHHHHHHHhcCCCEEEC-CCCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCC
Confidence 45555544 34 899999999999999999985 332211 00111 12
Q ss_pred ccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEE
Q 015125 77 QNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMAD 109 (413)
Q Consensus 77 ~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD 109 (413)
.|...+++ +.|+..+.+++++.|+++|+++++=
T Consensus 204 ~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 204 ADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred CCEEEEecccccCHHHHHHHHHHHHHcCCcEEec
Confidence 44445664 4699999999999999999999874
No 359
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=34.03 E-value=1.1e+02 Score=29.49 Aligned_cols=51 Identities=14% Similarity=0.011 Sum_probs=0.0
Q ss_pred CCCCc--cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 36 SCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 36 ~~~~g--~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
|.+|| |++++.+.+++|-+-|+++|.+.. ..-.++.+ |.+|-+++++.+.+
T Consensus 16 F~~dg~vD~~a~~~lv~~li~~Gv~gi~~~G----------ttGE~~~L-----s~eEr~~v~~~~v~ 68 (299)
T COG0329 16 FDEDGSVDEEALRRLVEFLIAAGVDGLVVLG----------TTGESPTL-----TLEERKEVLEAVVE 68 (299)
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCEEEECC----------CCccchhc-----CHHHHHHHHHHHHH
No 360
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=34.03 E-value=31 Score=27.83 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=39.5
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCCC------CC------CCCcccCCCCC---------------CCCCCHHHHHHHHH
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSFA------PE------GYLPQNLYSLN---------------SSYGSEHLLKALLH 97 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~~------~~------gY~~~d~~~id---------------~~~Gt~~~~~~Lv~ 97 (413)
....+.-+++||+.+|-+.+--+..+ +. +-.+..|-+++ |-||-..+=.+|.+
T Consensus 14 a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~lse~~~fa~ 93 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPGYGFLSENAEFAE 93 (110)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEESTSSTTTTHHHHHH
T ss_pred HHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCcccccccchhHHHHHHHH
Confidence 44566778999999988865333321 11 12222333332 88888888888888
Q ss_pred HHHHcCCEEE
Q 015125 98 KMKQHKVRAM 107 (413)
Q Consensus 98 ~~h~~Gi~Vi 107 (413)
+|.+.||.+|
T Consensus 94 ~~~~~gi~fi 103 (110)
T PF00289_consen 94 ACEDAGIIFI 103 (110)
T ss_dssp HHHHTT-EES
T ss_pred HHHHCCCEEE
Confidence 8888888764
No 361
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=33.94 E-value=50 Score=31.04 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE
Q 015125 88 SEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
+.+++++|++.||+.|+.+|+|+
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvev 167 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEV 167 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEe
Confidence 35799999999999999999998
No 362
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=33.94 E-value=86 Score=27.06 Aligned_cols=52 Identities=8% Similarity=0.136 Sum_probs=40.1
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.|+.-+.+...-|+++||. |+ ..|-+-.=+++.+.++++++.++|++||+=+
T Consensus 9 SD~~~~~~a~~~L~~~gi~---------------~d----v~V~SaHRtp~~~~~~~~~a~~~g~~viIa~ 60 (156)
T TIGR01162 9 SDLPTMKKAADILEEFGIP---------------YE----LRVVSAHRTPELMLEYAKEAEERGIKVIIAG 60 (156)
T ss_pred hhHHHHHHHHHHHHHcCCC---------------eE----EEEECcccCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3788888888999999996 11 1233455578999999999999999988643
No 363
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=33.76 E-value=1.2e+02 Score=26.43 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=42.1
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEE
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS-------EHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt-------~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+.+.+.++..+.||+..|.+.|.- +...+.... .+.|+++++.|.++|++|.+.-
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~-------------~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR-------------YPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT-------------ESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc-------------cccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 8899999999999999999988742 111111111 3568999999999999999984
No 364
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=33.73 E-value=35 Score=26.38 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=22.7
Q ss_pred HHHHhhhhhHHHcCCCEEEcCCCCCCC
Q 015125 43 RNLERKVPDISKSGFTSVWLPPATHSF 69 (413)
Q Consensus 43 ~gi~~~L~yLk~lGv~~I~L~Pi~~~~ 69 (413)
-.+.+.++.|++.|++.|.+.|++...
T Consensus 45 P~i~~~l~~l~~~g~~~vvvvPl~~~~ 71 (101)
T cd03409 45 PDTEEAIRELAEEGYQRVVIVPLAPVS 71 (101)
T ss_pred CCHHHHHHHHHHcCCCeEEEEeCcccc
Confidence 457778888999999999999987763
No 365
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=33.50 E-value=1.3e+02 Score=28.31 Aligned_cols=35 Identities=11% Similarity=-0.020 Sum_probs=29.0
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCC
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT 66 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~ 66 (413)
++|.++-.= +.+..++...+.+++|+++|.++|++
T Consensus 68 ~vi~gv~~~------~~~~~i~~a~~a~~~Gad~v~v~pP~ 102 (281)
T cd00408 68 PVIAGVGAN------STREAIELARHAEEAGADGVLVVPPY 102 (281)
T ss_pred eEEEecCCc------cHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 567776553 47889999999999999999999974
No 366
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=33.39 E-value=47 Score=33.29 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCcCCC
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRVGTT 119 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~ 119 (413)
++++|+++++-|.++|+-||.|-|+.+...+.
T Consensus 181 ~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~ 212 (393)
T COG0436 181 SKEELKAIVELAREHDIIIISDEIYEELVYDG 212 (393)
T ss_pred CHHHHHHHHHHHHHcCeEEEEehhhhhcccCC
Confidence 58999999999999999999999999988754
No 367
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.28 E-value=19 Score=31.50 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE
Q 015125 88 SEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
+++++++|++.||++|+++-|-.
T Consensus 165 ~~e~l~eFvd~Ah~hGL~~AlAG 187 (235)
T COG1891 165 DEEELEEFVDLAHEHGLEVALAG 187 (235)
T ss_pred cHHHHHHHHHHHHHcchHHHhcc
Confidence 47899999999999999987643
No 368
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=33.21 E-value=61 Score=31.22 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 83 d~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
....|..++++++++-||++|+-|++|-+...
T Consensus 158 ~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~ 189 (345)
T cd06450 158 TTDTGAIDPLEEIADLAEKYDLWLHVDAAYGG 189 (345)
T ss_pred cCCCCCCCCHHHHHHHHHHhCCeEEEechhhH
Confidence 34467788899999999999999999998543
No 369
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=33.17 E-value=1.2e+02 Score=28.71 Aligned_cols=35 Identities=6% Similarity=-0.123 Sum_probs=28.8
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCC
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT 66 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~ 66 (413)
++|.++-.= +.+..++...+.+++|+++|.++|++
T Consensus 71 ~vi~gv~~~------~~~~~~~~a~~a~~~G~d~v~~~~P~ 105 (284)
T cd00950 71 PVIAGTGSN------NTAEAIELTKRAEKAGADAALVVTPY 105 (284)
T ss_pred cEEeccCCc------cHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 456666553 48999999999999999999999863
No 370
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=33.12 E-value=49 Score=27.63 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHH
Q 015125 90 HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHF 169 (413)
Q Consensus 90 ~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~ 169 (413)
+||+-|++.|++.|++|++=+++=+ +.|+++.+ + +.+
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~PvN---------g~wydytG----------------------------~------~~~ 72 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQPVN---------GKWYDYTG----------------------------L------SKE 72 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-------------HHHHHHTT------------------------------------HH
T ss_pred HHHHHHHHHHHHcCCceEEEecCCc---------HHHHHHhC----------------------------C------CHH
Confidence 6899999999999999998665542 33333221 1 357
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 015125 170 VRKDIIAWLRWLRNTVGF 187 (413)
Q Consensus 170 vr~~l~~~~~~w~~~~gv 187 (413)
.|+...+-++..+++.|+
T Consensus 73 ~r~~~y~kI~~~~~~~gf 90 (130)
T PF04914_consen 73 MRQEYYKKIKYQLKSQGF 90 (130)
T ss_dssp HHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 788888888888888877
No 371
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=32.97 E-value=44 Score=32.29 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
+.++++++++.|+++|+.||+|-++-...
T Consensus 143 ~~~~~~~l~~~a~~~~~~ii~De~y~~~~ 171 (330)
T TIGR01140 143 PPETLLALAARLRARGGWLVVDEAFIDFT 171 (330)
T ss_pred CHHHHHHHHHHhHhcCCEEEEECcccccC
Confidence 47889999999999999999999875443
No 372
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=32.93 E-value=78 Score=28.52 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=47.2
Q ss_pred eeecCCCCCccHHHHHhhhhhHHHcCCC-EEEcCCCCCCCCCCC----CCcccCCCCCCCCCCH----------HHHHHH
Q 015125 31 GFNWESCKHDWWRNLERKVPDISKSGFT-SVWLPPATHSFAPEG----YLPQNLYSLNSSYGSE----------HLLKAL 95 (413)
Q Consensus 31 ~f~~~~~~~g~~~gi~~~L~yLk~lGv~-~I~L~Pi~~~~~~~g----Y~~~d~~~id~~~Gt~----------~~~~~L 95 (413)
.||.+ ..+.+.+.+.++|++|+. +|-|.|=.+-...-. =+..-.-+++|.+|+- ++++++
T Consensus 85 ~~H~E-----~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~ 159 (201)
T PF00834_consen 85 TFHAE-----ATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKL 159 (201)
T ss_dssp EEEGG-----GTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHH
T ss_pred EEccc-----chhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHH
Confidence 56776 455677889999999999 788888554322111 2233345778988872 334444
Q ss_pred HHHHHHcCCEEEEEEccc
Q 015125 96 LHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 96 v~~~h~~Gi~VilD~V~N 113 (413)
.++.. .++.+.+|.=+|
T Consensus 160 ~~~~~-~~~~I~vDGGI~ 176 (201)
T PF00834_consen 160 IPENG-LDFEIEVDGGIN 176 (201)
T ss_dssp HHHHT-CGSEEEEESSES
T ss_pred HHhcC-CceEEEEECCCC
Confidence 44433 678888887555
No 373
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=32.93 E-value=1.3e+02 Score=28.62 Aligned_cols=57 Identities=16% Similarity=0.064 Sum_probs=38.6
Q ss_pred HHHHHhhhhhHHHcC--CCEEEcCCCCCCCC------CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015125 42 WRNLERKVPDISKSG--FTSVWLPPATHSFA------PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 103 (413)
Q Consensus 42 ~~gi~~~L~yLk~lG--v~~I~L~Pi~~~~~------~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~G 103 (413)
...+.+-++.++++| ++.+.|+|.++... +.-|--.|+..+ +.++++++.+.+.++|
T Consensus 231 ~~ei~~l~~~~~~~~~~v~~v~l~~~~~~g~~~~~~~~~~~~~~~~~~p-----~~~~~~~~~~~~~~~g 295 (295)
T TIGR02494 231 EENIEAIAAFLRKLEPGVDEIDLLPYHRLGENKYRQLGREYPDSEIPDP-----AEEQLLELKEIFESKG 295 (295)
T ss_pred HHHHHHHHHHHHHhccCCceEEecCCCchhHHHHHHhCCCCccCCCCCC-----CHHHHHHHHHHHHhcC
Confidence 677777888889998 89999999887641 112322332222 4788888887776655
No 374
>PRK07050 cystathionine beta-lyase; Provisional
Probab=32.90 E-value=58 Score=32.62 Aligned_cols=30 Identities=10% Similarity=-0.066 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 85 SYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 85 ~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
..|...+++++++.||++|+.||+|-++..
T Consensus 162 p~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 162 VTMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred CCccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 347899999999999999999999998664
No 375
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=32.62 E-value=1.7e+02 Score=27.62 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=43.6
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR 105 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~ 105 (413)
++|.++=.-+ .+..++...+.+++|+++|.++|++ |+.. -+.+++.+..++..+ ++.
T Consensus 67 ~vi~gvg~~~------~~~ai~~a~~a~~~Gad~v~v~~P~------------y~~~----~~~~~i~~yf~~v~~-~lp 123 (279)
T cd00953 67 KVIFQVGSLN------LEESIELARAAKSFGIYAIASLPPY------------YFPG----IPEEWLIKYFTDISS-PYP 123 (279)
T ss_pred CEEEEeCcCC------HHHHHHHHHHHHHcCCCEEEEeCCc------------CCCC----CCHHHHHHHHHHHHh-cCC
Confidence 3777766544 8999999999999999999998864 1110 145666666666666 777
Q ss_pred EEE
Q 015125 106 AMA 108 (413)
Q Consensus 106 Vil 108 (413)
||+
T Consensus 124 v~i 126 (279)
T cd00953 124 TFI 126 (279)
T ss_pred EEE
Confidence 776
No 376
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=32.62 E-value=78 Score=30.43 Aligned_cols=27 Identities=0% Similarity=0.165 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
+.+++.+.++.++++||+|..|+.++-
T Consensus 161 t~~~~~~ai~~l~~~gi~v~~~lI~Gl 187 (302)
T TIGR01212 161 DFACYVDAVKRARKRGIKVCSHVILGL 187 (302)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeEEECC
Confidence 568899999999999999999998873
No 377
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=32.56 E-value=37 Score=33.97 Aligned_cols=32 Identities=9% Similarity=0.010 Sum_probs=27.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 80 YSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 80 ~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
-.+...-|...+++++++.||++|+.|++|.+
T Consensus 178 ~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~a 209 (406)
T TIGR01814 178 SGVQYYTGQLFDMAAITRAAHAKGALVGFDLA 209 (406)
T ss_pred eccccccceecCHHHHHHHHHHcCCEEEEEcc
Confidence 34556678889999999999999999999975
No 378
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=32.53 E-value=45 Score=33.13 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=28.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 81 SLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 81 ~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
.+....|+..+++++++.||++|+.||+|-+.-
T Consensus 166 ~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 166 HVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred CCCCCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 344568999999999999999999999999743
No 379
>PRK12677 xylose isomerase; Provisional
Probab=32.49 E-value=1.1e+02 Score=30.65 Aligned_cols=54 Identities=9% Similarity=0.175 Sum_probs=35.0
Q ss_pred HHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 44 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 44 gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
...+.+..++++|+++|.|..--. .| +..+. ...+...+++.+.+.+.||+|.+
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l-------~p---~~~~~-~~~~~~~~~lk~~l~~~GL~v~~ 85 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDL-------VP---FGATD-AERDRIIKRFKKALDETGLVVPM 85 (384)
T ss_pred CHHHHHHHHHHhCCCEEEeccccc-------CC---CCCCh-hhhHHHHHHHHHHHHHcCCeeEE
Confidence 477899999999999999843100 01 11110 01123578888888999999764
No 380
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=32.25 E-value=60 Score=31.48 Aligned_cols=50 Identities=6% Similarity=0.151 Sum_probs=38.5
Q ss_pred hhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCC----HHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 50 PDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS----EHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 50 ~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt----~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
..||++|-|+|=|+= ||++|..=.. .+-++++.++|++.||-.+|.+|.-
T Consensus 113 ~rike~GadavK~Ll--------------yy~pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltY 166 (325)
T TIGR01232 113 KRLKEQGANAVKFLL--------------YYDVDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTY 166 (325)
T ss_pred HHHHHhCCCeEEEEE--------------EeCCCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 368999999998876 5666632222 3458899999999999999999764
No 381
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=32.24 E-value=1.3e+02 Score=26.01 Aligned_cols=50 Identities=16% Similarity=0.083 Sum_probs=32.5
Q ss_pred hhhhHHHcCCCEEEcCCCCCCCCCCCC-CcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 48 KVPDISKSGFTSVWLPPATHSFAPEGY-LPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 48 ~L~yLk~lGv~~I~L~Pi~~~~~~~gY-~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+....+.|++.|.++|++++.+..++ .+ .+.+.++++.+. ..+.|+++.
T Consensus 107 ~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~---~~~pv~a~G 157 (196)
T cd00564 107 EALRAEELGADYVGFGPVFPTPTKPGAGPP----------LGLELLREIAEL---VEIPVVAIG 157 (196)
T ss_pred HHHHHhhcCCCEEEECCccCCCCCCCCCCC----------CCHHHHHHHHHh---CCCCEEEEC
Confidence 445566789999999999987654443 11 135556665543 457777764
No 382
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=32.23 E-value=98 Score=29.79 Aligned_cols=59 Identities=12% Similarity=0.232 Sum_probs=46.1
Q ss_pred cHHHHHhhhhhHHHcCCC-EEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGFT-SVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~-~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
..+.=++.|..|++.|+. +|.+.||.+.. +.+++.+.+++|.+.|.+.+.+.++.=...
T Consensus 167 sp~~Ri~al~~l~eaGi~~~v~v~PIiP~~------------------~d~e~e~~l~~~~~ag~~~v~~~~l~~~~~ 226 (297)
T COG1533 167 SPEERLEALKELSEAGIPVGLFVAPIIPGL------------------NDEELERILEAAAEAGARVVVYGTLRLRLD 226 (297)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEecccCCC------------------ChHHHHHHHHHHHHcCCCeeEeeeeeccHH
Confidence 356666777888999996 57788988762 238899999999999999999887764433
No 383
>PRK10060 RNase II stability modulator; Provisional
Probab=32.20 E-value=49 Score=35.62 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=48.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCC--------cccCCCCCCCC--------CCHHHHHHHHHHHHHcCC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYL--------PQNLYSLNSSY--------GSEHLLKALLHKMKQHKV 104 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~--------~~d~~~id~~~--------Gt~~~~~~Lv~~~h~~Gi 104 (413)
+...+.+.+..|+++||..-. -=+ ..||. |.|+-.||..| ....-++.+++-||+.||
T Consensus 539 ~~~~~~~~l~~L~~~G~~ial-Ddf-----Gtg~ssl~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~ 612 (663)
T PRK10060 539 NEELALSVIQQFSQLGAQVHL-DDF-----GTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNL 612 (663)
T ss_pred CHHHHHHHHHHHHHCCCEEEE-ECC-----CCchhhHHHHHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCC
Confidence 578889999999999995433 111 12222 56777777433 345678999999999999
Q ss_pred EEEEEEcccc
Q 015125 105 RAMADIVINH 114 (413)
Q Consensus 105 ~VilD~V~NH 114 (413)
+||.+.|=+.
T Consensus 613 ~viAeGVEt~ 622 (663)
T PRK10060 613 QVIAEGVETA 622 (663)
T ss_pred cEEEecCCCH
Confidence 9999987653
No 384
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=31.98 E-value=1.7e+02 Score=28.34 Aligned_cols=52 Identities=10% Similarity=0.097 Sum_probs=35.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
+.+.+.+-+++++++||+.|.++|.++... .+. ...+=+.++.+++.+++-+
T Consensus 176 n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~----a~~-----~~~~l~~~e~~~~~~~~~~ 227 (318)
T TIGR03470 176 DPEEVAEFFDYLTDLGVDGMTISPGYAYEK----APD-----QDHFLGRRQTKKLFREVLS 227 (318)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCccccc----ccc-----cccccCHHHHHHHHHHHHh
Confidence 689999999999999999999999775421 111 1112245677777666644
No 385
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=31.96 E-value=2.5e+02 Score=26.76 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=47.4
Q ss_pred CceeEEEeeecCCCCCccHHHHHhhhhhHHHcC-CCEEEcCCCCCCCCCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 24 GREILFQGFNWESCKHDWWRNLERKVPDISKSG-FTSVWLPPATHSFAPE-GYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 24 ~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lG-v~~I~L~Pi~~~~~~~-gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
+.++|+++.--+ -+...+....+++.| +++|+|.=--++. .+ |+... ...+.+.+++++.++
T Consensus 91 ~~p~i~si~g~~------~~~~~~~a~~~~~aG~~D~iElN~~cP~~-~~gg~~~~---------~~~~~~~eiv~~vr~ 154 (301)
T PRK07259 91 DTPIIANVAGST------EEEYAEVAEKLSKAPNVDAIELNISCPNV-KHGGMAFG---------TDPELAYEVVKAVKE 154 (301)
T ss_pred CCcEEEEeccCC------HHHHHHHHHHHhccCCcCEEEEECCCCCC-CCCccccc---------cCHHHHHHHHHHHHH
Confidence 456899987533 677777777889999 9999994211111 12 32211 256778888888887
Q ss_pred c-CCEEEEEEcc
Q 015125 102 H-KVRAMADIVI 112 (413)
Q Consensus 102 ~-Gi~VilD~V~ 112 (413)
. .+-|++-+.+
T Consensus 155 ~~~~pv~vKl~~ 166 (301)
T PRK07259 155 VVKVPVIVKLTP 166 (301)
T ss_pred hcCCCEEEEcCC
Confidence 6 6777777653
No 386
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=31.90 E-value=39 Score=33.10 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 83 NSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 83 d~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
+...|+..+++++++.||++|+.||+|-+.-
T Consensus 149 ~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 149 DGNYGNLHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CCCCeeeccHHHHHHHHHHcCCeEEEECCcc
Confidence 3457888999999999999999999999864
No 387
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=31.88 E-value=1.4e+02 Score=28.17 Aligned_cols=47 Identities=15% Similarity=0.072 Sum_probs=35.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 102 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~ 102 (413)
|++++.+.++++.+.||++|.+.-- .-.++.+ |.+|-+++++.+-+.
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~Gs----------tGE~~~L-----t~eEr~~l~~~~~~~ 64 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAGT----------TGLGPSL-----SFQEKLELLKAYSDI 64 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEccc----------CCCcccC-----CHHHHHHHHHHHHHH
Confidence 8999999999999999999998752 1223444 577777777766553
No 388
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=31.83 E-value=3e+02 Score=27.20 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
.+++.+.++... +.|+|.+++ |++..+.|.-..++++.++
T Consensus 141 ~~~l~~~~~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~ 181 (365)
T TIGR02660 141 PDFLVELAEVAA-EAGADRFRFADTVGILDPFSTYELVRALR 181 (365)
T ss_pred HHHHHHHHHHHH-HcCcCEEEEcccCCCCCHHHHHHHHHHHH
Confidence 356777777765 789988776 6677777776666666554
No 389
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=31.83 E-value=57 Score=33.04 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+.++++++++.|+++|+-||.|-++.|...
T Consensus 208 ~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~ 237 (430)
T PLN00145 208 SYEHLAKIAETARKLGILVIADEVYDHLTF 237 (430)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccchhhcc
Confidence 367899999999999999999999988654
No 390
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=31.80 E-value=1.3e+02 Score=29.68 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=42.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
|++.+++.+. .-.+.+|++.|++.. .|. .+-+++.++++++-|+++|+-+|+|=|.-..+.
T Consensus 166 d~~~le~~l~---~~~~~~v~~ep~~~~---~G~----------~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~ 226 (400)
T PTZ00125 166 DVEALEKLLQ---DPNVAAFIVEPIQGE---AGV----------IVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGR 226 (400)
T ss_pred CHHHHHHHhC---CCCeEEEEEcCccCC---CCC----------ccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 5777776664 224778888886322 121 122456799999999999999999999865554
No 391
>PRK05968 hypothetical protein; Provisional
Probab=31.73 E-value=63 Score=32.26 Aligned_cols=62 Identities=21% Similarity=0.041 Sum_probs=37.9
Q ss_pred hHHHcCCCEEEcCCCCCCC---CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 51 DISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 51 yLk~lGv~~I~L~Pi~~~~---~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
.++..|++.+++.+.-... .-......-.-.+....+...+++++++.||++|+.||+|-..
T Consensus 122 ~~~~~G~~v~~vd~~d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 122 ILKRMGVEVDYVDGRDEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred HHHHcCceEEEeCCCCHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 4667788877764320000 0001111111123345677899999999999999999999864
No 392
>PTZ00413 lipoate synthase; Provisional
Probab=31.60 E-value=1.5e+02 Score=29.59 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=45.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
+.+.+++.+..|+++||+.|=|.-.. .++... +.| .+|=++++|..+-+.+-+.|.+-|.-.
T Consensus 308 T~eEvie~m~dLrelGVDivtIGQYL-~Ps~~h------~~V-~~yv~P~~F~~~~~~a~~~Gf~~v~sg 369 (398)
T PTZ00413 308 TEEEVRQTLRDLRTAGVSAVTLGQYL-QPTKTR------LKV-SRYAHPKEFEMWEEEAMKMGFLYCASG 369 (398)
T ss_pred CHHHHHHHHHHHHHcCCcEEeecccc-CCCccc------CCc-eeccCHHHHHHHHHHHHHcCCceEEec
Confidence 78999999999999999988663211 112222 333 367789999999999999998766543
No 393
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.53 E-value=1.7e+02 Score=29.23 Aligned_cols=56 Identities=5% Similarity=-0.064 Sum_probs=39.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
+-+.+.+-.+.|+.+++ .|-|.|.++.+. .+|-. =++++++++.+.+.++|+.|.+
T Consensus 276 s~e~a~~La~ll~~l~~-~VnLIPYN~~~~------~~~~~-----ps~e~v~~f~~~L~~~Gi~vti 331 (372)
T PRK11194 276 GTEHAHQLAELLKDTPC-KINLIPWNPFPG------APYGR-----SSNSRIDRFSKVLMEYGFTVIV 331 (372)
T ss_pred CHHHHHHHHHHHhcCCc-eEEEecCCCCCC------CCCCC-----CCHHHHHHHHHHHHHCCCeEEE
Confidence 35555566667778875 899999876531 22222 2478899999999999999965
No 394
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=31.32 E-value=1.2e+02 Score=29.62 Aligned_cols=113 Identities=14% Similarity=0.176 Sum_probs=74.4
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCC----C-CC-CCCccc------CCCCCCCCC-CHHHHHHHHHHHHHcCCEE
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSF----A-PE-GYLPQN------LYSLNSSYG-SEHLLKALLHKMKQHKVRA 106 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~----~-~~-gY~~~d------~~~id~~~G-t~~~~~~Lv~~~h~~Gi~V 106 (413)
|+++-..+.++-.++.|.++|=+--...-. . .. .|...+ +|.+=.++. +.++++.|.+.|++.||.+
T Consensus 13 Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~ 92 (329)
T TIGR03569 13 GSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEF 92 (329)
T ss_pred CcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcE
Confidence 799999999999999999999775421100 1 11 232222 111111111 3688999999999999988
Q ss_pred EEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcC
Q 015125 107 MADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 186 (413)
Q Consensus 107 ilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~g 186 (413)
+-.. | + .+.+... +++|
T Consensus 93 ~stp------------------f-------d-------------------------------------~~svd~l-~~~~ 109 (329)
T TIGR03569 93 LSTP------------------F-------D-------------------------------------LESADFL-EDLG 109 (329)
T ss_pred EEEe------------------C-------C-------------------------------------HHHHHHH-HhcC
Confidence 7543 1 1 0122333 4788
Q ss_pred CCeEeecccCCCcHHHHHHHHHhhCCCeE
Q 015125 187 FQDFRFDFARGYSAKYVKEYIEGARPIFS 215 (413)
Q Consensus 187 vDGfR~D~a~~i~~~~~~~~~~~~~~~~~ 215 (413)
|+.+.+=+.......+++++.+.-+|.++
T Consensus 110 v~~~KIaS~~~~n~pLL~~~A~~gkPvil 138 (329)
T TIGR03569 110 VPRFKIPSGEITNAPLLKKIARFGKPVIL 138 (329)
T ss_pred CCEEEECcccccCHHHHHHHHhcCCcEEE
Confidence 99998888888888888888877777443
No 395
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.21 E-value=1.8e+02 Score=28.09 Aligned_cols=61 Identities=15% Similarity=0.307 Sum_probs=37.2
Q ss_pred hhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCC-----CCCCCCCC-H----HHHHHHHHHHHHc---CCEEEEEEccc
Q 015125 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLY-----SLNSSYGS-E----HLLKALLHKMKQH---KVRAMADIVIN 113 (413)
Q Consensus 47 ~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~-----~id~~~Gt-~----~~~~~Lv~~~h~~---Gi~VilD~V~N 113 (413)
+....+++.|+|+|+|.. .|||-+..|. .-...||+ . .-+.+.|+++.+. ++.|.+++-..
T Consensus 145 ~aA~~a~~aGfDgveih~------~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~ 218 (327)
T cd02803 145 AAARRAKEAGFDGVEIHG------AHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSAD 218 (327)
T ss_pred HHHHHHHHcCCCEEEEcc------hhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechh
Confidence 344466789999999975 4777433332 22345555 2 2345666666653 67888887543
No 396
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=31.20 E-value=65 Score=31.17 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE
Q 015125 88 SEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
..+.+.+|++.|+++|.+|++|.
T Consensus 144 ~~d~y~~li~~~~~~g~~vilD~ 166 (310)
T COG1105 144 PPDAYAELIRILRQQGAKVILDT 166 (310)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEC
Confidence 37889999999999999999996
No 397
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=31.09 E-value=54 Score=32.26 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEeecccCCC-----c------HHHHHHHHHhhC
Q 015125 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY-----S------AKYVKEYIEGAR 211 (413)
Q Consensus 166 ~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i-----~------~~~~~~~~~~~~ 211 (413)
.++..|+.+++.+..|++++|+||+-+|--... + ..|++++.++++
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~ 148 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFE 148 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 467889999999888899999999999953221 1 235667766654
No 398
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=31.08 E-value=43 Score=32.27 Aligned_cols=27 Identities=19% Similarity=0.062 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 86 YGSEHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 86 ~Gt~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
-|...+++++++.||++|+.||+|-+.
T Consensus 145 tG~~~~~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 145 DGDIAPLPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred CCCccCHHHHHHHHHHcCCEEEEEccc
Confidence 466677899999999999999999984
No 399
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=31.05 E-value=1.1e+02 Score=27.85 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=52.8
Q ss_pred eeEEEeee-cCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-------------------CCCC---------CCc
Q 015125 26 EILFQGFN-WESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF-------------------APEG---------YLP 76 (413)
Q Consensus 26 ~~i~~~f~-~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-------------------~~~g---------Y~~ 76 (413)
..++-+.. |+ .+...+.++.|+++++..|+ =|+-... +.+. -..
T Consensus 96 ~l~lDaN~~~~------~~~a~~~~~~l~~~~i~~iE-eP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~ 168 (229)
T cd00308 96 RLAVDANGAWT------PKEAIRLIRALEKYGLAWIE-EPCAPDDLEGYAALRRRTGIPIAADESVTTVDDALEALELGA 168 (229)
T ss_pred eEEEECCCCCC------HHHHHHHHHHhhhcCCCeEE-CCCCccCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCC
Confidence 44555554 34 78888888999999998888 4553321 0010 123
Q ss_pred ccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 77 QNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 77 ~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
.|...+++ +.|+..+.+++++.|+++|+.+++
T Consensus 169 ~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~ 201 (229)
T cd00308 169 VDILQIKPTRVGGLTESRRAADLAEAFGIRVMV 201 (229)
T ss_pred CCEEecCccccCCHHHHHHHHHHHHHcCCEEee
Confidence 55556664 569999999999999999998886
No 400
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=30.99 E-value=1.9e+02 Score=27.39 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=54.0
Q ss_pred eecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 32 FNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 32 f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
|.-.-|-=....-+++....+|+.|.+.+-..+..+..++ .+|=.+ .++.|+.|.+++++.|+-|+-.++
T Consensus 48 viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSP-----YsFQGl-----ge~gL~~l~~a~~~~Gl~vvtEvm 117 (286)
T COG2876 48 VIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSP-----YSFQGL-----GEEGLKLLKRAADETGLPVVTEVM 117 (286)
T ss_pred EEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCc-----cccccc-----CHHHHHHHHHHHHHcCCeeEEEec
Confidence 3334444457999999999999999999999988877533 232222 258899999999999999998873
No 401
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=30.96 E-value=70 Score=32.05 Aligned_cols=63 Identities=16% Similarity=0.108 Sum_probs=43.9
Q ss_pred hhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 47 ~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
++|..|+++|||.|.|.- ++. ++.-+-.++ +--+.++..+.++.+++.+..|-+|++++--+.
T Consensus 123 e~L~~l~~~GvnrisiGv--QS~-----~~~~L~~l~-R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgq 185 (394)
T PRK08898 123 EKFAQFRASGVNRLSIGI--QSF-----NDAHLKALG-RIHDGAEARAAIEIAAKHFDNFNLDLMYALPGQ 185 (394)
T ss_pred HHHHHHHHcCCCeEEEec--ccC-----CHHHHHHhC-CCCCHHHHHHHHHHHHHhCCceEEEEEcCCCCC
Confidence 788899999999988753 110 111122332 223567788889999999999999999986554
No 402
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=30.95 E-value=78 Score=29.87 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=50.2
Q ss_pred CCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCC--------------CC---------------------CCcccCCC
Q 015125 37 CKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAP--------------EG---------------------YLPQNLYS 81 (413)
Q Consensus 37 ~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~--------------~g---------------------Y~~~d~~~ 81 (413)
..+-+++...+-+.-|.+.|+|+|+|.=+|.-+-. .| +-..-||+
T Consensus 25 ~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~N 104 (265)
T COG0159 25 AGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYN 104 (265)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEecc
Confidence 34457999999999999999999999755544411 12 22333444
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCE--EEEEEccccCc
Q 015125 82 LNSSYGSEHLLKALLHKMKQHKVR--AMADIVINHRV 116 (413)
Q Consensus 82 id~~~Gt~~~~~~Lv~~~h~~Gi~--VilD~V~NH~~ 116 (413)
+=-++| +.++++.|.+.|+. +|.|+.+.|..
T Consensus 105 pi~~~G----ie~F~~~~~~~GvdGlivpDLP~ee~~ 137 (265)
T COG0159 105 PIFNYG----IEKFLRRAKEAGVDGLLVPDLPPEESD 137 (265)
T ss_pred HHHHhh----HHHHHHHHHHcCCCEEEeCCCChHHHH
Confidence 444555 44567777777776 66777776644
No 403
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=30.87 E-value=1.5e+02 Score=28.11 Aligned_cols=73 Identities=8% Similarity=0.044 Sum_probs=51.5
Q ss_pred cccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 015125 18 GAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLH 97 (413)
Q Consensus 18 ~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~ 97 (413)
.|.+.+.+++|+-+=+ +...|++-++-|++.|||-|=|.--..- +.+. ..| .+|=++++|+++-+
T Consensus 210 ~P~i~TKSgiMlGLGE-------t~~Ev~e~m~DLr~~gvdilTiGQYlqP-S~~H------lpV-~ryv~PeeF~~~~~ 274 (306)
T COG0320 210 GPDIPTKSGLMVGLGE-------TDEEVIEVMDDLRSAGVDILTIGQYLQP-SRKH------LPV-QRYVTPEEFDELEE 274 (306)
T ss_pred CCCcccccceeeecCC-------cHHHHHHHHHHHHHcCCCEEEeccccCC-cccc------CCc-eeccCHHHHHHHHH
Confidence 4555566666665533 6899999999999999999876542211 2222 122 46778999999999
Q ss_pred HHHHcCCE
Q 015125 98 KMKQHKVR 105 (413)
Q Consensus 98 ~~h~~Gi~ 105 (413)
.+.+.|..
T Consensus 275 ~a~~~GF~ 282 (306)
T COG0320 275 VAEEMGFL 282 (306)
T ss_pred HHHHccch
Confidence 99998864
No 404
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=30.85 E-value=43 Score=33.03 Aligned_cols=28 Identities=11% Similarity=0.007 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 85 SYGSEHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 85 ~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
..|...+++++++.||++|+.||+|-++
T Consensus 137 p~g~~~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 137 PTLKVVDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred CCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 3466778999999999999999999974
No 405
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=30.80 E-value=18 Score=36.50 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 84 SSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 84 ~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
+.+|.-.+++++++.||++|+.|++|=
T Consensus 178 TY~Gv~~di~~I~~~~h~~~~~llvDE 204 (417)
T PF01276_consen 178 TYYGVCYDIKEIAEICHKHGIPLLVDE 204 (417)
T ss_dssp -TTSEEE-HHHHHHHHCCTECEEEEE-
T ss_pred CCCeEEECHHHHHHHhcccCCEEEEEc
Confidence 456778899999999999999999996
No 406
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=30.75 E-value=72 Score=30.71 Aligned_cols=32 Identities=9% Similarity=0.104 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 84 SSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 84 ~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
|.--+.++..+.++.||+.||++-.=+.+.|-
T Consensus 139 ~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~ 170 (309)
T TIGR00423 139 PNKLSSDEWLEVIKTAHRLGIPTTATMMFGHV 170 (309)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCceeeEEecCC
Confidence 43446788889999999999999999988875
No 407
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=30.70 E-value=1.6e+02 Score=27.97 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=29.0
Q ss_pred ceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCC
Q 015125 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT 66 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~ 66 (413)
-+||.++=. + .+..++...+.+++|+++|.++|++
T Consensus 70 ~pvi~gv~~-~------t~~~i~~a~~a~~~Gad~v~~~pP~ 104 (289)
T cd00951 70 VPVLAGAGY-G------TATAIAYAQAAEKAGADGILLLPPY 104 (289)
T ss_pred CCEEEecCC-C------HHHHHHHHHHHHHhCCCEEEECCCC
Confidence 356777744 5 7889999999999999999999974
No 408
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=30.49 E-value=48 Score=31.82 Aligned_cols=24 Identities=21% Similarity=0.063 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
+.++++++++.||++|+-||+|-.
T Consensus 144 ~~~~l~~i~~~~~~~~~~livDea 167 (338)
T cd06502 144 PLDELKAISALAKENGLPLHLDGA 167 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEeechH
Confidence 589999999999999999999964
No 409
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=30.48 E-value=66 Score=33.02 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE
Q 015125 88 SEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
+.++++++.+-|+++|+.||.|-
T Consensus 196 s~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 196 SMANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 58899999999999999999997
No 410
>PRK08960 hypothetical protein; Provisional
Probab=30.46 E-value=58 Score=32.23 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
.++++++++.||++|+-||+|-++.+.
T Consensus 184 ~~~~~~l~~~~~~~~~~li~De~Y~~~ 210 (387)
T PRK08960 184 RDELAALSQALRARGGHLVVDEIYHGL 210 (387)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 789999999999999999999988754
No 411
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=30.42 E-value=69 Score=31.61 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 86 YGSEHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 86 ~Gt~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
.|+..+++++++.||++|+.||+|-++
T Consensus 149 ~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 149 LMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 688999999999999999999999876
No 412
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=30.31 E-value=54 Score=26.45 Aligned_cols=55 Identities=11% Similarity=-0.029 Sum_probs=35.3
Q ss_pred hHHH-cCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 51 DISK-SGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 51 yLk~-lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
++.. +|+..+...+.... ..-...|..-+=+.-|...+..+.++.|+++|++||.
T Consensus 20 ~l~~~~~~~~~~~~~~~~~---~~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 20 LLLDEAKIPVYVVKDYTLP---AFVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVA 75 (119)
T ss_pred HHHhccCCCEEEecCccCc---CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
Confidence 3455 48888876542211 0111223233337778889999999999999999984
No 413
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=30.22 E-value=1.5e+02 Score=28.14 Aligned_cols=35 Identities=6% Similarity=-0.061 Sum_probs=29.1
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCC
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT 66 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~ 66 (413)
.+|.+.-.= +.+..++...+.+++|+++|-++|++
T Consensus 75 ~viagvg~~------~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 75 KLIAQVGSV------NTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred CEEecCCCC------CHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 467766443 48999999999999999999999964
No 414
>PLN02509 cystathionine beta-lyase
Probab=30.21 E-value=69 Score=32.94 Aligned_cols=31 Identities=6% Similarity=0.016 Sum_probs=26.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 82 LNSSYGSEHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 82 id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
+....|...+++++++.||++|+-||+|-.+
T Consensus 226 PsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~ 256 (464)
T PLN02509 226 PTNPRQQISDIRKIAEMAHAQGALVLVDNSI 256 (464)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 3344678899999999999999999999973
No 415
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=30.20 E-value=91 Score=29.18 Aligned_cols=44 Identities=9% Similarity=0.112 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEeecccCCCc-----HHHHHHHHHhhCC
Q 015125 169 FVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-----AKYVKEYIEGARP 212 (413)
Q Consensus 169 ~vr~~l~~~~~~w~~~~gvDGfR~D~a~~i~-----~~~~~~~~~~~~~ 212 (413)
..++.+++.+..+++++|+||+=+|-=.... ..+++++++++++
T Consensus 96 ~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~~d~~~f~~ll~~l~~~l~~ 144 (253)
T cd06544 96 SWVSNAVSSLTSIIQTYNLDGIDIDYEHFPADPDTFVECIGQLITELKN 144 (253)
T ss_pred hHHHHHHHHHHHHHHHhCCCceeeecccCCcCHHHHHHHHHHHHHHhhh
Confidence 3455667778888889999999999753321 2466777777764
No 416
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=30.13 E-value=57 Score=32.02 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEeeccc
Q 015125 167 QHFVRKDIIAWLRWLRNTVGFQDFRFDFA 195 (413)
Q Consensus 167 ~~~vr~~l~~~~~~w~~~~gvDGfR~D~a 195 (413)
+++.|+.+++.+..+++++|+||+-+|-=
T Consensus 88 ~~~~R~~Fi~si~~~~~~~~fDGidiDwE 116 (345)
T cd02878 88 KPANRDTFANNVVNFVNKYNLDGVDFDWE 116 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceeeccc
Confidence 68889999999988899999999999975
No 417
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=30.13 E-value=41 Score=28.30 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=27.9
Q ss_pred HhcC-CCeeEEecCcccCC-chhHHHHHHHHHHHHHhCcccC
Q 015125 322 ILMH-PGIPSVFYDHFYDW-GDSIHNQIVKLMDVRRQQDIHS 361 (413)
Q Consensus 322 ll~~-pGiP~Iy~G~E~gw-~~~l~~~i~~L~~lR~~~p~l~ 361 (413)
+.-. ||||+|.-|+.+.- ...+.++++.|-+.-++.|-+.
T Consensus 82 i~pYPPGIPll~pGE~it~~~~~~i~yl~~l~~~~~~fpGf~ 123 (136)
T PF03711_consen 82 IVPYPPGIPLLVPGERITEETEEIIDYLLALQEFGAHFPGFE 123 (136)
T ss_dssp BEECTTTS-SB-TTEEB-STTHHHHHHHHHHHHHHTCSTTS-
T ss_pred eeecCCCCcEECCccccccchHHHHHHHHHHHHhCCcCcCCC
Confidence 3445 59999999999854 3568888888888888887664
No 418
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=30.11 E-value=1.2e+02 Score=30.37 Aligned_cols=52 Identities=8% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHH-HHHHHHHHHHcCCEEEE
Q 015125 45 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHL-LKALLHKMKQHKVRAMA 108 (413)
Q Consensus 45 i~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~-~~~Lv~~~h~~Gi~Vil 108 (413)
..+.+..++++|+++|.+.. .|.+-.+..-...+. .+++.+.++++||+|..
T Consensus 34 ~~e~i~~la~~GfdgVE~~~------------~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 34 PVEAVHKLAELGAYGVTFHD------------DDLIPFGAPPQERDQIVRRFKKALDETGLKVPM 86 (382)
T ss_pred HHHHHHHHHHhCCCEEEecc------------cccCCCCCChhHHHHHHHHHHHHHHHhCCeEEE
No 419
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.08 E-value=2.4e+02 Score=26.40 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=39.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYG-SEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~G-t~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
+-+-+.+....+|++|++.|.=. .|+ |. .++.+--| +++.|+.|.+.|++.||.++-|+
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g-~~k--------pR--ts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev 86 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGG-AYK--------PR--TSAASFQGLGLQGIRYLHEVCQEFGLLSVSEI 86 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec-ccC--------CC--CCCcccCCCCHHHHHHHHHHHHHcCCCEEEee
Confidence 35666777777999999665422 222 11 22222222 26799999999999999999987
No 420
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=30.04 E-value=1.1e+02 Score=27.28 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCEEEEEE
Q 015125 90 HLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 90 ~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
..+.++++.|+++||++++++
T Consensus 89 ~~~~~~i~~~~~~g~~~~~~~ 109 (206)
T TIGR03128 89 ATIKGAVKAAKKHGKEVQVDL 109 (206)
T ss_pred HHHHHHHHHHHHcCCEEEEEe
Confidence 567899999999999999975
No 421
>PRK07324 transaminase; Validated
Probab=29.61 E-value=68 Score=31.62 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
+.++++++++.|+++|+.||+|-++.+.
T Consensus 171 ~~~~l~~i~~~a~~~~~~ii~De~y~~l 198 (373)
T PRK07324 171 DRAYLEEIVEIARSVDAYVLSDEVYRPL 198 (373)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 5789999999999999999999987543
No 422
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=29.59 E-value=45 Score=27.83 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 87 GSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 87 Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
|...+++++++.||++|+.+|+|-...-...
T Consensus 106 g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~ 136 (170)
T cd01494 106 GVLVPLKEIRKIAKEYGILLLVDAASAGGAS 136 (170)
T ss_pred CeEcCHHHHHHHHHHcCCEEEEecccccccc
Confidence 3344568999999999999999986664333
No 423
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=29.50 E-value=61 Score=26.21 Aligned_cols=67 Identities=13% Similarity=0.037 Sum_probs=40.1
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE-GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~-gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
..-..+-...|+.+|.....+.......... .-.+.|..=+=+.-|...+..++++.|+++|+++|+
T Consensus 25 ~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 25 GLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIA 92 (139)
T ss_pred HHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE
Confidence 3344444456778888666554432211110 112333333336677788999999999999999864
No 424
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.46 E-value=1.9e+02 Score=28.60 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=44.0
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
+-+.+.+-...+|+.|+..+- -..|+.. +.++| ..+| ++.++.|.+.+++.||.++-++
T Consensus 113 s~eq~l~~A~~lk~~g~~~~r-~g~~kpRtsp~sf---------~G~g-~~gl~~L~~~~~e~Gl~~~tev 172 (352)
T PRK13396 113 NEEMIVETAKRVKAAGAKFLR-GGAYKPRTSPYAF---------QGHG-ESALELLAAAREATGLGIITEV 172 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEE-eeeecCCCCCccc---------CCch-HHHHHHHHHHHHHcCCcEEEee
Confidence 577888888899999997765 3333321 22332 3367 9999999999999999999887
No 425
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=29.32 E-value=68 Score=32.19 Aligned_cols=29 Identities=7% Similarity=-0.054 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 85 SYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 85 ~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
.+....|++++++-||+.|+-||+|=.+-
T Consensus 174 Pll~v~DI~~l~~la~~~g~~vvVDnTf~ 202 (409)
T KOG0053|consen 174 PLLKVPDIEKLARLAHKYGFLVVVDNTFG 202 (409)
T ss_pred CccccccHHHHHHHHhhCCCEEEEeCCcC
Confidence 34456679999999999999999996554
No 426
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=29.30 E-value=1.8e+02 Score=27.83 Aligned_cols=36 Identities=3% Similarity=-0.213 Sum_probs=30.1
Q ss_pred ceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCC
Q 015125 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT 66 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~ 66 (413)
-+||.++-.=+ .+..++...+.+++|+++|-+.|++
T Consensus 70 ~pvi~gv~~~~------t~~ai~~a~~A~~~Gad~v~v~pP~ 105 (294)
T TIGR02313 70 IPFAPGTGALN------HDETLELTKFAEEAGADAAMVIVPY 105 (294)
T ss_pred CcEEEECCcch------HHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 35677776644 8899999999999999999999975
No 427
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=29.21 E-value=65 Score=30.07 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEE
Q 015125 89 EHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+++++|++.|++.||.+++.+
T Consensus 137 ~~~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 137 PSQIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred HHHHHHHHHHHHHcCCceEEEE
Confidence 5689999999999999999998
No 428
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=29.10 E-value=97 Score=25.19 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCEEEEEEccccCcCCCCCC
Q 015125 92 LKALLHKMKQHKVRAMADIVINHRVGTTQGH 122 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~ 122 (413)
++++++.+.+.||++++|+=.+=.|. .+++
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~-~~~~ 31 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSR-KPGF 31 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCC-CCCC
Confidence 57888899999999999998776666 5544
No 429
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=28.98 E-value=85 Score=30.75 Aligned_cols=68 Identities=10% Similarity=-0.005 Sum_probs=48.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCC-----------------CCC-----------CCCcccCCCCCC-CCCCHHH
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSF-----------------APE-----------GYLPQNLYSLNS-SYGSEHL 91 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-----------------~~~-----------gY~~~d~~~id~-~~Gt~~~ 91 (413)
+.+..++.+..|+++|+..|+ -|+.... ... .-...|+.++++ +.|+..+
T Consensus 201 ~~~~a~~~~~~l~~~~i~~iE-qP~~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~ 279 (357)
T cd03316 201 DLAEAIRLARALEEYDLFWFE-EPVPPDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITE 279 (357)
T ss_pred CHHHHHHHHHHhCccCCCeEc-CCCCccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 488888888899999988777 3443211 000 022466667774 5599999
Q ss_pred HHHHHHHHHHcCCEEEEE
Q 015125 92 LKALLHKMKQHKVRAMAD 109 (413)
Q Consensus 92 ~~~Lv~~~h~~Gi~VilD 109 (413)
.+++++.|+++||+|++=
T Consensus 280 ~~~i~~~a~~~g~~~~~~ 297 (357)
T cd03316 280 AKKIAALAEAHGVRVAPH 297 (357)
T ss_pred HHHHHHHHHHcCCeEecc
Confidence 999999999999998763
No 430
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=28.80 E-value=53 Score=32.38 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=27.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 82 LNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 82 id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
++...|+..+++++++-||++|+.||+|-+.-
T Consensus 155 p~~~~G~~~~l~~i~~la~~~~~~livDea~~ 186 (370)
T TIGR02539 155 VDGEYGNLPDAGKVAKVCREKGVPLLLNCAYT 186 (370)
T ss_pred CCCCCccccCHHHHHHHHHHcCCeEEEECccc
Confidence 44556899999999999999999999998644
No 431
>PRK07568 aspartate aminotransferase; Provisional
Probab=28.74 E-value=60 Score=32.13 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
+.++++++++.||++|+-||+|-++....
T Consensus 180 ~~~~~~~i~~~~~~~~~~ii~De~y~~~~ 208 (397)
T PRK07568 180 TKEELEMLAEIAKKHDLFLISDEVYREFV 208 (397)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccchhcc
Confidence 46889999999999999999999887543
No 432
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=28.66 E-value=51 Score=32.59 Aligned_cols=27 Identities=7% Similarity=0.068 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 86 YGSEHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 86 ~Gt~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
.|...+++++++.||++|+.||+|-++
T Consensus 149 tg~~~di~~I~~la~~~gi~vvvD~t~ 175 (364)
T PRK07269 149 LMVEFDIEKVAKLAHAKGAKVIVDNTF 175 (364)
T ss_pred CCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence 366678999999999999999999985
No 433
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=28.65 E-value=48 Score=31.53 Aligned_cols=23 Identities=4% Similarity=0.336 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 87 GSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 87 Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.=+|..++||++|+|. |.|+||+
T Consensus 134 ~IKE~vR~~I~~A~kV-IAIVMD~ 156 (284)
T PF07894_consen 134 HIKEVVRRMIQQAQKV-IAIVMDV 156 (284)
T ss_pred CHHHHHHHHHHHhcce-eEEEeec
Confidence 3378999999999998 9999998
No 434
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=28.65 E-value=1.9e+02 Score=27.77 Aligned_cols=35 Identities=9% Similarity=0.037 Sum_probs=28.9
Q ss_pred ceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCC
Q 015125 25 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT 66 (413)
Q Consensus 25 ~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~ 66 (413)
-++|.++=. + ....++.+.+.+++|+++|-++|++
T Consensus 77 ~pvi~gv~~-~------t~~~i~~~~~a~~~Gadav~~~pP~ 111 (303)
T PRK03620 77 VPVIAGAGG-G------TAQAIEYAQAAERAGADGILLLPPY 111 (303)
T ss_pred CcEEEecCC-C------HHHHHHHHHHHHHhCCCEEEECCCC
Confidence 356777743 4 7899999999999999999999964
No 435
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=28.60 E-value=1.8e+02 Score=26.19 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=38.9
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
..++.+.+-+..++++|++++-+....+.. .|| .+.+++|++.|+ |+.+.+
T Consensus 69 ~E~~~M~~dI~~~~~~GadG~VfG~L~~dg-----------~iD-----~~~~~~Li~~a~--~~~~tF 119 (201)
T PF03932_consen 69 EEIEIMKEDIRMLRELGADGFVFGALTEDG-----------EID-----EEALEELIEAAG--GMPVTF 119 (201)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEE--BETTS-----------SB------HHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEEeECCCC-----------CcC-----HHHHHHHHHhcC--CCeEEE
Confidence 478899999999999999999988876542 354 788999999997 777765
No 436
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=28.44 E-value=72 Score=31.80 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
.++++++++.|+++|+-||+|-++.+...
T Consensus 188 ~~~~~~i~~~a~~~~~~ii~De~y~~~~~ 216 (403)
T TIGR01265 188 RDHLQKIAEVARKLGIPIIADEIYGHMVF 216 (403)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcccccccc
Confidence 57899999999999999999999876543
No 437
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=28.40 E-value=1.7e+02 Score=28.52 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=38.0
Q ss_pred CCccHHHHHhhh-hhHHHcCCCEEEcCCCCCCC----------CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 015125 38 KHDWWRNLERKV-PDISKSGFTSVWLPPATHSF----------APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRA 106 (413)
Q Consensus 38 ~~g~~~gi~~~L-~yLk~lGv~~I~L~Pi~~~~----------~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~V 106 (413)
.+..|..+.+-+ ...+++|++.++..|-.... -..|.+..= +.| -..+.+...+++|++.||.|
T Consensus 34 ~~pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIi---v~~--~d~~al~~~l~~a~~~gIpV 108 (336)
T PRK15408 34 GVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAII---VSA--VSPDGLCPALKRAMQRGVKV 108 (336)
T ss_pred CCHHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEE---Eec--CCHHHHHHHHHHHHHCCCeE
Confidence 344566555544 34567788777655532111 023443321 111 13566888999999999999
Q ss_pred EE
Q 015125 107 MA 108 (413)
Q Consensus 107 il 108 (413)
|.
T Consensus 109 V~ 110 (336)
T PRK15408 109 LT 110 (336)
T ss_pred EE
Confidence 85
No 438
>PRK09064 5-aminolevulinate synthase; Validated
Probab=28.30 E-value=1e+02 Score=30.72 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 87 GSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 87 Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
|+...++++++-|+++|+-||+|=+.-
T Consensus 192 G~~~~l~~i~~l~~~~~~~livDEa~~ 218 (407)
T PRK09064 192 GDIAPIAEICDLADKYNALTYLDEVHA 218 (407)
T ss_pred ccccCHHHHHHHHHHcCCEEEEECCCc
Confidence 455568999999999999999998864
No 439
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=28.26 E-value=58 Score=29.34 Aligned_cols=86 Identities=12% Similarity=0.132 Sum_probs=52.2
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC---CCCCCcccCCCCCCCCC--------CHHHHHH
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGYLPQNLYSLNSSYG--------SEHLLKA 94 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~---~~gY~~~d~~~id~~~G--------t~~~~~~ 94 (413)
.+++++=.- ....+...+.+.+..|+++|+. |+|-=+-.... .-..-+.|+-.+|+.+- ...-++.
T Consensus 118 ~lvlei~e~--~~~~~~~~~~~~i~~l~~~G~~-ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~ 194 (241)
T smart00052 118 RLELEITES--VLLDDDESAVATLQRLRELGVR-IALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQS 194 (241)
T ss_pred HEEEEEeCh--hhhcChHHHHHHHHHHHHCCCE-EEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHH
Confidence 355555441 1123456666889999999996 44432111111 11122355666664432 3356999
Q ss_pred HHHHHHHcCCEEEEEEcccc
Q 015125 95 LLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 95 Lv~~~h~~Gi~VilD~V~NH 114 (413)
+++.||..|++||++-|=+.
T Consensus 195 l~~~~~~~~~~via~gVe~~ 214 (241)
T smart00052 195 IIELAQKLGLQVVAEGVETP 214 (241)
T ss_pred HHHHHHHCCCeEEEecCCCH
Confidence 99999999999999987664
No 440
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=28.19 E-value=65 Score=30.37 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=24.7
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 84 SSYGS--EHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 84 ~~~Gt--~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
.++|. ..+|+++++.++++|..||+|+=++
T Consensus 65 ~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~ 96 (261)
T TIGR02127 65 ERFGSEGFKALEEVIAHARSLGLPVLADVKRG 96 (261)
T ss_pred HhcCHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 45565 5678899999999999999999555
No 441
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=28.15 E-value=1.8e+02 Score=27.43 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=47.5
Q ss_pred HHHHHhhhhhHHHcCCCEEEcC--CCCCCC-----------CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 42 WRNLERKVPDISKSGFTSVWLP--PATHSF-----------APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~--Pi~~~~-----------~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
.+.+.+.++.|+++|++.|-++ |--... ...|+.+.=+...-. =++.++++.+..+++.||+=||
T Consensus 14 ~~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~--~n~~~l~~~L~~~~~~Gi~nvL 91 (272)
T TIGR00676 14 EENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIG--ATREEIREILREYRELGIRHIL 91 (272)
T ss_pred HHHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecC--CCHHHHHHHHHHHHHCCCCEEE
Confidence 6899999999999999999984 221111 135777654343332 2688999999999999999665
Q ss_pred EE
Q 015125 109 DI 110 (413)
Q Consensus 109 D~ 110 (413)
=+
T Consensus 92 ~l 93 (272)
T TIGR00676 92 AL 93 (272)
T ss_pred Ee
Confidence 44
No 442
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=28.14 E-value=69 Score=30.08 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEE
Q 015125 89 EHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.+++++|++.||+.||.+++.+
T Consensus 144 ~~~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 144 DDQLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEE
Confidence 5779999999999999999998
No 443
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=28.11 E-value=2e+02 Score=28.32 Aligned_cols=79 Identities=10% Similarity=0.073 Sum_probs=55.8
Q ss_pred CCceeEEEeee-cCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-------------------CCCC---------
Q 015125 23 NGREILFQGFN-WESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF-------------------APEG--------- 73 (413)
Q Consensus 23 ~~~~~i~~~f~-~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-------------------~~~g--------- 73 (413)
++-.+++-+.. |+ ++..++.+..|+++|+..|+ -|+.... +-++
T Consensus 188 ~~~~l~vDan~~~~------~~~A~~~~~~l~~~~l~~iE-eP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i 260 (368)
T cd03329 188 PDMRLMHDGAHWYS------RADALRLGRALEELGFFWYE-DPLREASISSYRWLAEKLDIPILGTEHSRGALESRADWV 260 (368)
T ss_pred CCCeEEEECCCCcC------HHHHHHHHHHhhhcCCCeEe-CCCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHH
Confidence 33345665554 44 88999999999999998888 3443221 1111
Q ss_pred -CCcccCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEE
Q 015125 74 -YLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 74 -Y~~~d~~~id~~-~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
-...|...+++. .|+..+.+++++.|.++|++++.
T Consensus 261 ~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~ 297 (368)
T cd03329 261 LAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVEL 297 (368)
T ss_pred HhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEE
Confidence 123666777755 49999999999999999999976
No 444
>PLN00175 aminotransferase family protein; Provisional
Probab=28.04 E-value=68 Score=32.22 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+.++++++++.|+++|+-||.|-++.+...
T Consensus 205 s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~ 234 (413)
T PLN00175 205 TREELELIASLCKENDVLAFTDEVYDKLAF 234 (413)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecccCcccc
Confidence 368999999999999999999999887654
No 445
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=27.86 E-value=1.1e+02 Score=31.29 Aligned_cols=77 Identities=8% Similarity=0.061 Sum_probs=49.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCC-CCc---------------c-c--CCCCC-CCCCCHHHHHHHHHHHH
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEG-YLP---------------Q-N--LYSLN-SSYGSEHLLKALLHKMK 100 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~g-Y~~---------------~-d--~~~id-~~~Gt~~~~~~Lv~~~h 100 (413)
--.||..-|.-+..||+.+.-+.-..-.....+ +.+ . | ...+. --+++.+.+..+++.++
T Consensus 15 ggaGi~aDi~t~~alg~~~~~v~Ta~t~Qnt~~~~~i~~~~~~~~~~q~~a~~~d~~~~~ik~G~l~~~e~~~~i~~~~k 94 (448)
T PRK08573 15 GGAGIEADLKTFAALGVHGAVAITSVTAQNTYEVRAIHDLPPEVVAAQIEAVWEDMGIDAAKTGMLSNREIIEAVAKTVS 94 (448)
T ss_pred CHHHHHHHHHHHHHcCCeecccceEEEeecCCCceEEEECCHHHHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHHHHH
Confidence 468999999999999997766543222111100 000 0 0 00111 12567889999999999
Q ss_pred HcCCEEEEEEccccCcC
Q 015125 101 QHKVRAMADIVINHRVG 117 (413)
Q Consensus 101 ~~Gi~VilD~V~NH~~~ 117 (413)
++|+.|++|-|+-..+.
T Consensus 95 ~~g~~vv~DPv~~~~sG 111 (448)
T PRK08573 95 KYGFPLVVDPVMIAKSG 111 (448)
T ss_pred HcCCCEEEcCccccCCC
Confidence 99999999998876544
No 446
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=27.86 E-value=79 Score=31.31 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 87 GSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 87 Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
|+-+...+-++.+++.|++|.+-.|++-
T Consensus 138 g~f~~~~~~i~~l~~~g~~v~i~~vv~~ 165 (378)
T PRK05301 138 GAFAKKLAVARLVKAHGYPLTLNAVIHR 165 (378)
T ss_pred chHHHHHHHHHHHHHCCCceEEEEEeec
Confidence 5677777888899999999998888754
No 447
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=27.77 E-value=66 Score=32.73 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEc
Q 015125 89 EHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
.++++++.+-|+++||.||.|-.
T Consensus 172 ~~~l~~i~eia~~~gi~li~DaA 194 (431)
T cd00617 172 MANLREVRELAHKYGIPVVLDAA 194 (431)
T ss_pred HHHHHHHHHHHHHcCCEEEEEch
Confidence 68899999999999999999998
No 448
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=27.67 E-value=47 Score=26.40 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=24.1
Q ss_pred HHHHhhhhhHHHcCCCEEEcCCCCCCCCCC
Q 015125 43 RNLERKVPDISKSGFTSVWLPPATHSFAPE 72 (413)
Q Consensus 43 ~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~ 72 (413)
-.+.+-++.|...|++.|+|.|++-..+.|
T Consensus 42 P~i~~~l~~l~~~G~~~i~lvPl~L~~G~H 71 (103)
T cd03413 42 PGLDDVLAKLKKAGIKKVTLMPLMLVAGDH 71 (103)
T ss_pred CCHHHHHHHHHHcCCCEEEEEehhheeccc
Confidence 335666777899999999999999877655
No 449
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=27.62 E-value=52 Score=33.53 Aligned_cols=84 Identities=10% Similarity=0.015 Sum_probs=49.2
Q ss_pred ccCCceeEEEeeecCCCCCccHHHHHhhhhh-HHHcCCCEEEcC-CCCC----CCCCCCCCcccCCCCCCCCCCHHHHHH
Q 015125 21 IRNGREILFQGFNWESCKHDWWRNLERKVPD-ISKSGFTSVWLP-PATH----SFAPEGYLPQNLYSLNSSYGSEHLLKA 94 (413)
Q Consensus 21 ~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~y-Lk~lGv~~I~L~-Pi~~----~~~~~gY~~~d~~~id~~~Gt~~~~~~ 94 (413)
+++|..||..... |.+....+.+ ++..|+..+++. |.-. ..-...-...-.-.+....|...++++
T Consensus 105 l~~Gd~Vv~~~~~--------y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~ 176 (436)
T PRK07812 105 AGAGDHIVSSPRL--------YGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPG 176 (436)
T ss_pred hCCCCEEEEeCCc--------chHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHH
Confidence 4566666655432 3344333333 566888877773 3100 000001111112234455788999999
Q ss_pred HHHHHHHcCCEEEEEEcc
Q 015125 95 LLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 95 Lv~~~h~~Gi~VilD~V~ 112 (413)
+++.||++|+.||+|-..
T Consensus 177 I~~la~~~gi~liVD~t~ 194 (436)
T PRK07812 177 VAEVAHEAGVPLIVDNTI 194 (436)
T ss_pred HHHHHHHcCCEEEEECCC
Confidence 999999999999999863
No 450
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=27.53 E-value=4e+02 Score=26.48 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
.+++.+.++... +.|+|.+++ |++..+.|.-..+++..++
T Consensus 144 ~~~l~~~~~~~~-~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~ 184 (378)
T PRK11858 144 LDFLIEFAKAAE-EAGADRVRFCDTVGILDPFTMYELVKELV 184 (378)
T ss_pred HHHHHHHHHHHH-hCCCCEEEEeccCCCCCHHHHHHHHHHHH
Confidence 357788888775 889998876 6677777766665555543
No 451
>PLN02624 ornithine-delta-aminotransferase
Probab=27.44 E-value=1.9e+02 Score=29.76 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=40.3
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+.+.+++.++. +.-.+-+|.+-||+-.. |. .+-.++-|+++.+-|+++|+-+|+|=|.-..+.
T Consensus 210 d~~~l~~~l~~-~~~~iaaiiiEpv~~~~---G~----------v~p~~~~L~~l~~lc~~~gillI~DEv~tG~Gr 272 (474)
T PLN02624 210 DLDALEKIFEE-DGDRIAAFLFEPIQGEA---GV----------VIPPDGYLKAVRELCSKHNVLMIADEIQTGLAR 272 (474)
T ss_pred CHHHHHHHHHh-CCCCEEEEEECCccCCC---CC----------cCCCHHHHHHHHHHHHHcCCEEEEeccccCcCc
Confidence 56666655531 11236678888875321 21 122345599999999999999999999754443
No 452
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=27.41 E-value=4.4e+02 Score=26.02 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
.+++.+.++... +.|+|.+++ |++..+.|.-+.++++.++
T Consensus 140 ~~~l~~~~~~~~-~~g~~~i~l~DT~G~~~P~~v~~li~~l~ 180 (363)
T TIGR02090 140 IDFLIKVFKRAE-EAGADRINIADTVGVLTPQKMEELIKKLK 180 (363)
T ss_pred HHHHHHHHHHHH-hCCCCEEEEeCCCCccCHHHHHHHHHHHh
Confidence 356777787776 889998876 6677777777777777665
No 453
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=27.36 E-value=1.8e+02 Score=27.25 Aligned_cols=46 Identities=9% Similarity=0.076 Sum_probs=30.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
+-+...+.++.+.+.|+++|-+.|+ ..+.+...++++++.||.||+
T Consensus 41 d~~~q~~~i~~l~~~~vdgiIi~~~----------------------~~~~~~~~l~~~~~~giPvV~ 86 (302)
T TIGR02637 41 TAEGQIEVVNSLIAQKVDAIAISAN----------------------DPDALVPALKKAMKRGIKVVT 86 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCC----------------------ChHHHHHHHHHHHHCCCEEEE
Confidence 3455555666666666666666552 134566678899999999884
No 454
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=27.24 E-value=92 Score=30.54 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 87 GSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 87 Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
|+-+...+.++.+++.|++|.+-+|++.
T Consensus 129 g~f~~v~~~i~~l~~~g~~v~v~~vv~~ 156 (358)
T TIGR02109 129 NAFEQKLAMARAVKAAGLPLTLNFVIHR 156 (358)
T ss_pred cHHHHHHHHHHHHHhCCCceEEEEEecc
Confidence 4455666677888899999988888764
No 455
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=27.14 E-value=75 Score=31.11 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEE
Q 015125 89 EHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.++|++|++.||+.||.+++.+
T Consensus 216 ~~~L~~l~~~A~~LGme~LVEV 237 (338)
T PLN02460 216 DLDIKYMLKICKSLGMAALIEV 237 (338)
T ss_pred HHHHHHHHHHHHHcCCeEEEEe
Confidence 5689999999999999999998
No 456
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=27.11 E-value=1e+02 Score=31.16 Aligned_cols=117 Identities=13% Similarity=0.153 Sum_probs=71.2
Q ss_pred CCCCCcccCCCCCCCCCC--HHHHHHHHHHHHHcCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCCeeccCCCC
Q 015125 71 PEGYLPQNLYSLNSSYGS--EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGL 148 (413)
Q Consensus 71 ~~gY~~~d~~~id~~~Gt--~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 148 (413)
+.|-||.-+.+. |-.|. .+||-+=-++|-.=|--.|+|+|++-.+..-. ..|..| ..|.....|
T Consensus 66 PGgID~Hthlq~-p~~G~ts~DdF~~GTkAAlaGGtTmiID~vlp~~~~slv---~afe~w----r~~Ad~k~c------ 131 (522)
T KOG2584|consen 66 PGGIDPHTHLQM-PFMGMTSVDDFFQGTKAALAGGTTMIIDFVLPDKGTSLV---EAFEKW----REWADPKVC------ 131 (522)
T ss_pred cCccCccceecc-ccCCccchhhhhcccHHHhcCCceEEEEEecCCCCchHH---HHHHHH----HhhcCCcee------
Confidence 567777765555 44443 68999888999999999999999997633211 112111 223322222
Q ss_pred CCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCeEeecccC----CCcHHHHHHHHHhhC
Q 015125 149 GNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR----GYSAKYVKEYIEGAR 211 (413)
Q Consensus 149 ~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~gvDGfR~D~a~----~i~~~~~~~~~~~~~ 211 (413)
|++..--.+-+.++.|.+.|--. +.++||.+|-+++|. .+..+.+-|..+.++
T Consensus 132 ------CDyglhv~It~W~~~v~eem~~l----~~ekGvnsF~~fmayk~~~~v~d~~lye~l~~~~ 188 (522)
T KOG2584|consen 132 ------CDYGLHVGITWWSPSVKEEMEIL----VKEKGVNSFKFFMAYKDLYMVRDSELYEALKVCA 188 (522)
T ss_pred ------eeeeeeEeeeecCcchHHHHHHH----hhhcCcceEEeeeeeccccccCHHHHHHHHHHHh
Confidence 23333345566677776655433 369999999999973 344555555444443
No 457
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=27.05 E-value=1.3e+02 Score=28.86 Aligned_cols=67 Identities=7% Similarity=-0.007 Sum_probs=46.8
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCC-------------------CCC---------CCCcccCCCCC-CCCCCHHHH
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSF-------------------APE---------GYLPQNLYSLN-SSYGSEHLL 92 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-------------------~~~---------gY~~~d~~~id-~~~Gt~~~~ 92 (413)
.+..++.+..|++.|+..|+= |+-... +-+ .....|...++ .+.|+..+.
T Consensus 190 ~~~A~~~~~~l~~~~l~~iEe-P~~~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~ 268 (316)
T cd03319 190 PEEAVELLRELAELGVELIEQ-PVPAGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEA 268 (316)
T ss_pred HHHHHHHHHHHHhcCCCEEEC-CCCCCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHH
Confidence 678888888899999988882 332211 000 12233444555 556999999
Q ss_pred HHHHHHHHHcCCEEEEE
Q 015125 93 KALLHKMKQHKVRAMAD 109 (413)
Q Consensus 93 ~~Lv~~~h~~Gi~VilD 109 (413)
+++++.|+++|++|++=
T Consensus 269 ~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 269 LRIADLARAAGLKVMVG 285 (316)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999874
No 458
>PRK07777 aminotransferase; Validated
Probab=26.68 E-value=72 Score=31.52 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+.+++++|++.|+++|+-||+|-++.+...
T Consensus 177 ~~~~~~~l~~~~~~~~~~li~De~y~~~~~ 206 (387)
T PRK07777 177 TAAELAAIAELAVEHDLLVITDEVYEHLVF 206 (387)
T ss_pred CHHHHHHHHHHHHhcCcEEEEeccchhccc
Confidence 368999999999999999999998876543
No 459
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=26.66 E-value=2.9e+02 Score=28.29 Aligned_cols=98 Identities=9% Similarity=0.121 Sum_probs=62.6
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcC----CCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccC
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLP----PATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 115 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~----Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~ 115 (413)
+.+..-.+-+.-+|+||+++.=++ =|++..... .++ =-..+=+.+|+++|+++||.-++=+ +|-
T Consensus 56 d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~--------e~N--~~gl~fY~~l~del~~~gIep~vTL--~Hf 123 (460)
T COG2723 56 DFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGG--------EVN--EKGLRFYDRLFDELKARGIEPFVTL--YHF 123 (460)
T ss_pred chhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCC--------CcC--HHHHHHHHHHHHHHHHcCCEEEEEe--ccc
Confidence 357778889999999999987664 344432110 111 1124558899999999999999755 663
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCCeeccCCCCCCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhhcC
Q 015125 116 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 186 (413)
Q Consensus 116 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~vr~~l~~~~~~w~~~~g 186 (413)
--. ..... .+ + .+.|.++.+.+..+++...++||
T Consensus 124 d~P---------------~~L~~----~y-g-----------------GW~nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 124 DLP---------------LWLQK----PY-G-----------------GWENRETVDAFARYAATVFERFG 157 (460)
T ss_pred CCc---------------HHHhh----cc-C-----------------CccCHHHHHHHHHHHHHHHHHhc
Confidence 220 00000 00 1 23577888888888887777776
No 460
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=26.65 E-value=4.3e+02 Score=24.81 Aligned_cols=74 Identities=9% Similarity=0.079 Sum_probs=47.9
Q ss_pred CCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCC-CCHHHHHHHHHHHHH
Q 015125 23 NGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSY-GSEHLLKALLHKMKQ 101 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~-Gt~~~~~~Lv~~~h~ 101 (413)
.+..+|++++-.+ -+.+.+.+..+.+.|+++|.|.==-+... ....+ -..+.++++++++++
T Consensus 97 ~~~pvi~si~g~~------~~~~~~~a~~~~~~G~d~ielN~~cP~~~-----------~~~~~~~~~~~~~eiv~~vr~ 159 (289)
T cd02810 97 PGQPLIASVGGSS------KEDYVELARKIERAGAKALELNLSCPNVG-----------GGRQLGQDPEAVANLLKAVKA 159 (289)
T ss_pred CCCeEEEEeccCC------HHHHHHHHHHHHHhCCCEEEEEcCCCCCC-----------CCcccccCHHHHHHHHHHHHH
Confidence 3567899988765 67788888888899999999852111100 00111 235667788888876
Q ss_pred c-CCEEEEEEccc
Q 015125 102 H-KVRAMADIVIN 113 (413)
Q Consensus 102 ~-Gi~VilD~V~N 113 (413)
. ++-|++-+-.+
T Consensus 160 ~~~~pv~vKl~~~ 172 (289)
T cd02810 160 AVDIPLLVKLSPY 172 (289)
T ss_pred ccCCCEEEEeCCC
Confidence 5 66677766543
No 461
>PRK06290 aspartate aminotransferase; Provisional
Probab=26.63 E-value=1.4e+02 Score=29.85 Aligned_cols=30 Identities=7% Similarity=0.115 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+.++++++++-|+++|+-||.|=++.+...
T Consensus 197 s~e~l~~l~~la~~~~~~iI~DEaY~~~~~ 226 (410)
T PRK06290 197 TKEFYEEVVDFAKENNIIVVQDAAYAALTF 226 (410)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecchhhcee
Confidence 589999999999999999999999886543
No 462
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.57 E-value=1.1e+02 Score=30.01 Aligned_cols=81 Identities=7% Similarity=-0.099 Sum_probs=56.8
Q ss_pred ccCCceeEEEeee-cCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-------------------CCC--------
Q 015125 21 IRNGREILFQGFN-WESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF-------------------APE-------- 72 (413)
Q Consensus 21 ~~~~~~~i~~~f~-~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-------------------~~~-------- 72 (413)
+.++-.+++-+.. |+ .+..++.+..|+++|+..|+= |+.... +-+
T Consensus 173 ~g~~~~l~vDaN~~~~------~~~A~~~~~~l~~~~i~~iEe-P~~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~ 245 (352)
T cd03325 173 VGPDIDIGVDFHGRVS------KPMAKDLAKELEPYRLLFIEE-PVLPENVEALAEIAARTTIPIATGERLFSRWDFKEL 245 (352)
T ss_pred hCCCCEEEEECCCCCC------HHHHHHHHHhccccCCcEEEC-CCCccCHHHHHHHHHhCCCCEEecccccCHHHHHHH
Confidence 3344457887877 55 889999999999999998883 332111 101
Q ss_pred -CCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 73 -GYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 73 -gY~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
.-...|..++++ +.|+..+.+++++.|+++||+++.
T Consensus 246 ~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~ 283 (352)
T cd03325 246 LEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAP 283 (352)
T ss_pred HHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEec
Confidence 012345556664 679999999999999999999873
No 463
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=26.45 E-value=56 Score=32.44 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=48.1
Q ss_pred ccCCceeEEEeeecCCCCCccHHHHHhhhhh-HHHcCCCEEEcCCCCCCC----CCCCCCcccCCCCCCCCCCHHHHHHH
Q 015125 21 IRNGREILFQGFNWESCKHDWWRNLERKVPD-ISKSGFTSVWLPPATHSF----APEGYLPQNLYSLNSSYGSEHLLKAL 95 (413)
Q Consensus 21 ~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~y-Lk~lGv~~I~L~Pi~~~~----~~~gY~~~d~~~id~~~Gt~~~~~~L 95 (413)
+++|..|++.-.. |.+....+.. ++..|+..+++.+.-... -...=...-...+....|...+++++
T Consensus 82 l~~Gd~Vl~~~~~--------y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I 153 (378)
T TIGR01329 82 LNNGDEIIAGDDL--------YGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKI 153 (378)
T ss_pred hCCCCEEEEcCCC--------chHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHH
Confidence 4566666664332 3333333332 456788877775421000 00010111112333456777889999
Q ss_pred HHHHHHcCCEEEEEEcc
Q 015125 96 LHKMKQHKVRAMADIVI 112 (413)
Q Consensus 96 v~~~h~~Gi~VilD~V~ 112 (413)
++.||++|+.||+|-..
T Consensus 154 ~~la~~~g~~vivD~a~ 170 (378)
T TIGR01329 154 SEMAHAQNALVVVDNTM 170 (378)
T ss_pred HHHHHHcCCEEEEECCC
Confidence 99999999999999973
No 464
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=26.41 E-value=2.8e+02 Score=23.94 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=36.3
Q ss_pred hhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 50 PDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 50 ~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
..|..+|++++.+..... ..-...|..=+=+.-|...+..++++.|+++|++||.
T Consensus 53 ~~l~~~g~~~~~~~~~~~----~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~ 107 (179)
T cd05005 53 MRLMHLGLNVYVVGETTT----PAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVL 107 (179)
T ss_pred HHHHhCCCeEEEeCCCCC----CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 356778998888754321 1112222222226667788999999999999999975
No 465
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=26.37 E-value=2.7e+02 Score=26.44 Aligned_cols=66 Identities=18% Similarity=0.309 Sum_probs=41.0
Q ss_pred CCceeEEEeeecCC--CCCc---cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 015125 23 NGREILFQGFNWES--CKHD---WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLH 97 (413)
Q Consensus 23 ~~~~~i~~~f~~~~--~~~g---~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~ 97 (413)
+|+.+.+++.+|-- +.-| +-+.+...+.-+|++|+|+|=+.- | | .. .++.+
T Consensus 11 NGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h---------~-p-----------~~---~~~~~ 66 (298)
T PF02836_consen 11 NGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHH---------Y-P-----------PS---PRFYD 66 (298)
T ss_dssp TTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETT---------S--------------S---HHHHH
T ss_pred CCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEccc---------c-c-----------Cc---HHHHH
Confidence 56677888877642 1223 567788889999999999998632 0 0 11 34556
Q ss_pred HHHHcCCEEEEEEcc
Q 015125 98 KMKQHKVRAMADIVI 112 (413)
Q Consensus 98 ~~h~~Gi~VilD~V~ 112 (413)
.|-+.||-|+.++..
T Consensus 67 ~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 67 LCDELGILVWQEIPL 81 (298)
T ss_dssp HHHHHT-EEEEE-S-
T ss_pred HHhhcCCEEEEeccc
Confidence 778889999999976
No 466
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.35 E-value=66 Score=31.48 Aligned_cols=76 Identities=11% Similarity=0.028 Sum_probs=45.3
Q ss_pred EEeeecCCCCC-ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCC-------CCCCCcccCCCCC-CCCCCHHHHHHHHHHH
Q 015125 29 FQGFNWESCKH-DWWRNLERKVPDISKSGFTSVWLPPATHSFA-------PEGYLPQNLYSLN-SSYGSEHLLKALLHKM 99 (413)
Q Consensus 29 ~~~f~~~~~~~-g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-------~~gY~~~d~~~id-~~~Gt~~~~~~Lv~~~ 99 (413)
.|-++|..++- |.|..+ +|+--||+|+++++++.-. ..|=.+ -++ |--=+.+|+++++++|
T Consensus 50 Aq~~~~~~~k~y~syEeL------akd~~vDvVyi~~~~~qH~evv~l~l~~~K~V----L~EKPla~n~~e~~~iveaA 119 (351)
T KOG2741|consen 50 AQRHNIPNPKAYGSYEEL------AKDPEVDVVYISTPNPQHYEVVMLALNKGKHV----LCEKPLAMNVAEAEEIVEAA 119 (351)
T ss_pred HHhcCCCCCccccCHHHH------hcCCCcCEEEeCCCCccHHHHHHHHHHcCCcE----EecccccCCHHHHHHHHHHH
Confidence 34455532222 555554 3455699999998876521 111111 122 3334589999999999
Q ss_pred HHcCCEEEEEEcccc
Q 015125 100 KQHKVRAMADIVINH 114 (413)
Q Consensus 100 h~~Gi~VilD~V~NH 114 (413)
.+||+.+|-=+-.-|
T Consensus 120 ~~rgv~~meg~~~R~ 134 (351)
T KOG2741|consen 120 EARGVFFMEGLWWRF 134 (351)
T ss_pred HHcCcEEEeeeeeec
Confidence 999987776554333
No 467
>PRK06108 aspartate aminotransferase; Provisional
Probab=26.30 E-value=66 Score=31.57 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+.++++++++.|+++|+-||+|-++-+...
T Consensus 176 ~~~~~~~l~~~~~~~~~~li~De~y~~~~~ 205 (382)
T PRK06108 176 SRDDLRAILAHCRRHGLWIVADEVYERLYY 205 (382)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhhhhhcc
Confidence 578999999999999999999998776543
No 468
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=26.09 E-value=1e+02 Score=25.41 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=40.3
Q ss_pred HHHHHhhhhhHHHcCCCEEEcCCCCCCCCCC---------CCC-cccCCCCC-CCCCCHHHHHHHHHHHHH
Q 015125 42 WRNLERKVPDISKSGFTSVWLPPATHSFAPE---------GYL-PQNLYSLN-SSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 42 ~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~---------gY~-~~d~~~id-~~~Gt~~~~~~Lv~~~h~ 101 (413)
...+.+.|+.|.+.|++.|.+.|.+-.++-+ .|. +..=..+. |-+.+.++++++++++++
T Consensus 55 ~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 55 VDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 5677889999999999999999998766311 111 11001222 555567888888887764
No 469
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=26.08 E-value=72 Score=29.18 Aligned_cols=24 Identities=8% Similarity=-0.065 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
.++++++++.||+.|+++|+|...
T Consensus 108 ~~~i~~v~~~~~~~g~~~iie~~~ 131 (235)
T cd00958 108 LEELARVAAEAHKYGLPLIAWMYP 131 (235)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEec
Confidence 357999999999999999997633
No 470
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.04 E-value=2.1e+02 Score=28.30 Aligned_cols=75 Identities=8% Similarity=-0.007 Sum_probs=46.9
Q ss_pred cCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 015125 22 RNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 101 (413)
Q Consensus 22 ~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~ 101 (413)
+.++.+++++=.-.-- +.+.+.+.+-.+.|+.+++ .|.|.|.++.+ ...|-.+ +.+.++++.+.+.+
T Consensus 259 ~~~~~i~ieyvLI~Gv-NDs~e~a~~La~llk~l~~-~VnLIPyn~~~------~~~~~~p-----s~e~i~~f~~~l~~ 325 (356)
T PRK14462 259 DQRKRVMFEYLVIKDV-NDDLKSAKKLVKLLNGIKA-KVNLILFNPHE------GSKFERP-----SLEDMIKFQDYLNS 325 (356)
T ss_pred HhCCeEEEEEEEECCC-CCCHHHHHHHHHHHhhcCc-EEEEEeCCCCC------CCCCCCC-----CHHHHHHHHHHHHH
Confidence 3455555444332201 1246666666777888875 89999977542 2222222 47889999999999
Q ss_pred cCCEEEEE
Q 015125 102 HKVRAMAD 109 (413)
Q Consensus 102 ~Gi~VilD 109 (413)
+||.|.+=
T Consensus 326 ~gi~vtvR 333 (356)
T PRK14462 326 KGLLCTIR 333 (356)
T ss_pred CCCcEEEe
Confidence 99998653
No 471
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=26.01 E-value=81 Score=30.77 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
++++++++++.|+++|+-||+|-++-+..
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 188 (356)
T PRK08056 160 ERQLLQAIAERCKSLNIALILDEAFIDFI 188 (356)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecchhccC
Confidence 47889999999999999999999876543
No 472
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=26.01 E-value=54 Score=32.08 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 85 SYGSEHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 85 ~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
..|...+++++++.||++|+-||+|-+.
T Consensus 180 ~~G~~~~l~~i~~ia~~~~~~li~De~~ 207 (385)
T PRK05958 180 MDGDLAPLAELVALARRHGAWLLVDEAH 207 (385)
T ss_pred CCCCcCCHHHHHHHHHHhCCEEEEECcc
Confidence 4466778999999999999999999986
No 473
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=25.91 E-value=85 Score=25.83 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHcCCEEEE
Q 015125 87 GSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 87 Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
.+.+|++++++.|+++|++|.+
T Consensus 8 ~s~~ev~~~v~~a~~~~~~v~~ 29 (139)
T PF01565_consen 8 KSVEEVQAIVKFANENGVPVRV 29 (139)
T ss_dssp SSHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEE
Confidence 3689999999999999999986
No 474
>PRK05957 aspartate aminotransferase; Provisional
Probab=25.88 E-value=73 Score=31.60 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
++++++++++.||++|+-||.|-++-+...
T Consensus 178 ~~~~~~~i~~~a~~~~~~li~De~y~~~~~ 207 (389)
T PRK05957 178 PEALLRAVNQICAEHGIYHISDEAYEYFTY 207 (389)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccchhccC
Confidence 578999999999999999999998876543
No 475
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=25.81 E-value=1e+02 Score=30.23 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=27.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 81 SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 81 ~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
.+.|.-.+.++..+.++.||+.||++-.=+.+.|
T Consensus 179 ~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Gl 212 (351)
T TIGR03700 179 QICPEKISAERWLEIHRTAHELGLKTNATMLYGH 212 (351)
T ss_pred hcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeC
Confidence 4445545678888999999999999998888887
No 476
>PLN02721 threonine aldolase
Probab=25.81 E-value=74 Score=30.70 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
+.++++++++.||++|+.||+|-+.
T Consensus 156 ~~~~l~~l~~l~~~~g~~livD~a~ 180 (353)
T PLN02721 156 SVEYTDKVGELAKRHGLKLHIDGAR 180 (353)
T ss_pred cHHHHHHHHHHHHHcCCEEEEEchh
Confidence 3678999999999999999999854
No 477
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases.
Probab=25.79 E-value=1.3e+02 Score=29.61 Aligned_cols=76 Identities=11% Similarity=0.187 Sum_probs=50.3
Q ss_pred HHHHhhhhhHHHcCCCEEEcCCCCCCCC-CCCCCcccCC---CCCCCCCCHHHHHHHHHHHHHcCCEEE-EEEccccCcC
Q 015125 43 RNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLY---SLNSSYGSEHLLKALLHKMKQHKVRAM-ADIVINHRVG 117 (413)
Q Consensus 43 ~gi~~~L~yLk~lGv~~I~L~Pi~~~~~-~~gY~~~d~~---~id~~~Gt~~~~~~Lv~~~h~~Gi~Vi-lD~V~NH~~~ 117 (413)
..+.-.+.-|..||-+.-|-++++.... ..|=-.-|+| .=||.++ .++|.+|++++++.||+-| -|+|++-...
T Consensus 20 ~KL~Tt~aAL~~LG~d~r~~T~v~~~g~~~~g~l~G~L~i~G~GDP~L~-~~~L~~la~~l~~~Gi~~i~G~v~~D~s~f 98 (345)
T TIGR00666 20 QKVITAAAALLQLGPQFRFTTTVETKGNVENGNLKGNLVLRFGGDPTLK-RQDIRNLVATLKKSGVKQIDGNVLVDTSAF 98 (345)
T ss_pred HHHHHHHHHHHhcCCCCceeeEEEecCcccCCcccccEEEEeecCCCcC-HHHHHHHHHHHHHcCCcEEEeeEEEEcccc
Confidence 3455566778889999888888876531 1111111333 2247787 4679999999999999876 4788875554
Q ss_pred CC
Q 015125 118 TT 119 (413)
Q Consensus 118 ~~ 119 (413)
+.
T Consensus 99 ~~ 100 (345)
T TIGR00666 99 SS 100 (345)
T ss_pred cC
Confidence 43
No 478
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=25.73 E-value=73 Score=31.14 Aligned_cols=30 Identities=13% Similarity=-0.016 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+.++++++++.|+++|+-||.|-++.+...
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~~ 189 (357)
T TIGR03539 160 SVDELRAIVAWARERGAVVASDECYLELGW 189 (357)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecchhhhcc
Confidence 578999999999999999999998866543
No 479
>PRK02227 hypothetical protein; Provisional
Probab=25.71 E-value=1.3e+02 Score=27.93 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=35.0
Q ss_pred hhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 015125 47 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 108 (413)
Q Consensus 47 ~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~Vil 108 (413)
+-++.+++.|++.+-| .+....|=...|+. +.++|+++|++||++|+..=|
T Consensus 135 ~l~~~a~~aGf~g~Ml----DTa~Kdg~~Lfd~l-------~~~~L~~Fv~~ar~~Gl~~gL 185 (238)
T PRK02227 135 SLPAIAADAGFDGAML----DTAIKDGKSLFDHM-------DEEELAEFVAEARSHGLMSAL 185 (238)
T ss_pred HHHHHHHHcCCCEEEE----ecccCCCcchHhhC-------CHHHHHHHHHHHHHcccHhHh
Confidence 5667788999999987 22222232222222 478999999999999997543
No 480
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=25.70 E-value=1.6e+02 Score=28.29 Aligned_cols=81 Identities=9% Similarity=-0.014 Sum_probs=54.9
Q ss_pred CCceeEEEeee-cCCCCCccHHHHHhhhhhHHH---cCCCEEEc----------------CCCCCCCCCCC---------
Q 015125 23 NGREILFQGFN-WESCKHDWWRNLERKVPDISK---SGFTSVWL----------------PPATHSFAPEG--------- 73 (413)
Q Consensus 23 ~~~~~i~~~f~-~~~~~~g~~~gi~~~L~yLk~---lGv~~I~L----------------~Pi~~~~~~~g--------- 73 (413)
++-.+++-+.. |+ .+..++.+..|.+ +++..|+= .||.-..+-+.
T Consensus 153 ~~~~l~vDaN~~w~------~~~A~~~~~~l~~~~~~~i~~iEqP~~~~~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~ 226 (307)
T TIGR01927 153 DKAELRLDANGGLS------PDEAQQFLKALDPNLRGRIAFLEEPLPDADEMSAFSEATGTAIALDESLWELPQLADEYG 226 (307)
T ss_pred CCCeEEEeCCCCCC------HHHHHHHHHhcccccCCCceEEeCCCCCHHHHHHHHHhCCCCEEeCCCcCChHHHHHHHh
Confidence 33356777765 55 8888888999987 77877772 12221111111
Q ss_pred CCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEE
Q 015125 74 YLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMAD 109 (413)
Q Consensus 74 Y~~~d~~~id~-~~Gt~~~~~~Lv~~~h~~Gi~VilD 109 (413)
-...|...+++ +.|+..+.+++++.|+++||++++-
T Consensus 227 ~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~ 263 (307)
T TIGR01927 227 PGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFS 263 (307)
T ss_pred cCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 12345556664 4699999999999999999999974
No 481
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=25.67 E-value=76 Score=32.03 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEeec
Q 015125 166 TQHFVRKDIIAWLRWLRNTVGFQDFRFD 193 (413)
Q Consensus 166 ~~~~vr~~l~~~~~~w~~~~gvDGfR~D 193 (413)
.+++.|+.+++.+..+++++++||+-+|
T Consensus 101 ~~~~~R~~Fi~siv~~l~~~~fDGidiD 128 (413)
T cd02873 101 ESSESRNAFINSAHSLLKTYGFDGLDLA 128 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEee
Confidence 3688899999998888889999999998
No 482
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=25.66 E-value=2.1e+02 Score=26.15 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=43.8
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCC-CCCCCCCHHHHHHHHHHHHHcCCEEEEEEcc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYS-LNSSYGSEHLLKALLHKMKQHKVRAMADIVI 112 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~-id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~ 112 (413)
.+++.+.+.+...++.|++.|-++=.+-. ||...+... ..... ..+.++.|.+.|.+.++-|++=+..
T Consensus 16 ~n~~~i~~~i~~a~~~ga~lvv~PE~~l~----g~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~ii~G~~~ 84 (254)
T cd07576 16 ANLARLDEAAARAAAAGADLLVFPELFLT----GYNIGDAVARLAEPA-DGPALQALRAIARRHGIAIVVGYPE 84 (254)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEccCcccc----CCCCcchhhhhhccc-CChHHHHHHHHHHHcCCEEEEeccc
Confidence 46777777788888899998877654332 454433211 00111 2356788888889999999987643
No 483
>PLN02417 dihydrodipicolinate synthase
Probab=25.64 E-value=2.4e+02 Score=26.61 Aligned_cols=35 Identities=6% Similarity=-0.137 Sum_probs=29.0
Q ss_pred eeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCC
Q 015125 26 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT 66 (413)
Q Consensus 26 ~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~ 66 (413)
++|.+.-.=+ .+..++...+.+++|+++|.+.|++
T Consensus 72 pvi~gv~~~~------t~~~i~~a~~a~~~Gadav~~~~P~ 106 (280)
T PLN02417 72 KVIGNTGSNS------TREAIHATEQGFAVGMHAALHINPY 106 (280)
T ss_pred cEEEECCCcc------HHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 4676665534 8899999999999999999999974
No 484
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.60 E-value=1.7e+02 Score=28.65 Aligned_cols=79 Identities=9% Similarity=-0.057 Sum_probs=54.8
Q ss_pred CCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCCCCCC-----------------CCCCC-----------
Q 015125 23 NGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF-----------------APEGY----------- 74 (413)
Q Consensus 23 ~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~-----------------~~~gY----------- 74 (413)
++-..++-+..+- +.+..++.+..|+++|+..|+= |+.... +..-+
T Consensus 185 ~~~~l~vDaN~~~-----~~~~A~~~~~~l~~~~i~~iEe-P~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~ 258 (355)
T cd03321 185 DGVGLMVDYNQSL-----TVPEAIERGQALDQEGLTWIEE-PTLQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSA 258 (355)
T ss_pred CCCEEEEeCCCCc-----CHHHHHHHHHHHHcCCCCEEEC-CCCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh
Confidence 3334666665522 4888999999999999999985 543321 00111
Q ss_pred CcccCCCCC-CCCCCHHHHHHHHHHHHHcCCEEE
Q 015125 75 LPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAM 107 (413)
Q Consensus 75 ~~~d~~~id-~~~Gt~~~~~~Lv~~~h~~Gi~Vi 107 (413)
...|...++ .+.|+..+.+++++.|+++||+++
T Consensus 259 ~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~ 292 (355)
T cd03321 259 GACDLVMPDLMKIGGVTGWLRASALAEQAGIPMS 292 (355)
T ss_pred CCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeec
Confidence 234555556 456999999999999999999975
No 485
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=25.59 E-value=2.7e+02 Score=25.54 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=42.7
Q ss_pred ccHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 40 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 40 g~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
.+++.+.+.+...++.|++.|-++=.+-. ||...+.......--....++.+.+.|++.|+-|++=++
T Consensus 16 ~n~~~i~~~i~~a~~~gadliv~PE~~l~----g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~ 83 (261)
T cd07585 16 RNLAVIARWTRKAAAQGAELVCFPEMCIT----GYTHVRALSREAEVPDGPSTQALSDLARRYGLTILAGLI 83 (261)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecccccc----cccCCcccchhcccCCChHHHHHHHHHHHcCcEEEEecc
Confidence 45777777788888899998877654332 454433222111111224567777788889999987655
No 486
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=25.51 E-value=62 Score=32.29 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 85 SYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 85 ~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
..|+..+++++++.||++|+.||+|-++-
T Consensus 158 Ptg~~~dl~~I~~la~~~gi~lIvD~a~a 186 (388)
T PRK07811 158 PLLSITDIAALAELAHDAGAKVVVDNTFA 186 (388)
T ss_pred CcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence 34778999999999999999999998754
No 487
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=25.41 E-value=3e+02 Score=23.67 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=48.6
Q ss_pred cCCCeeEEecCcccCCchhHHHHHHHHHHHHHhCcccCCCCeE--EEEecCCEEEE-EECCEEEEEEcCCCCCCCCCCcE
Q 015125 324 MHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIK--ILEAQSNLYSA-IIGDKVCMKIGDGSWCPAGKEWT 400 (413)
Q Consensus 324 ~~pGiP~Iy~G~E~gw~~~l~~~i~~L~~lR~~~p~l~~G~~~--~~~~~~~~~~~-~r~~~~lv~lnn~~~~~~~~~~~ 400 (413)
.+|-+|+.|.--. ||...+.+.+++|++.|+++-.+...+.. +...+.+.-.- ...=..++++...-..++++---
T Consensus 7 e~p~~~VA~~rh~-G~~~~~~~~~~~l~~W~~~~~l~p~~S~~~gI~~ddP~~Tp~e~~R~D~cv~v~~~~~~n~~~v~~ 85 (154)
T COG3449 7 ELPPIPVAYLRHV-GDPATLKQTFEQLIAWRRENGLLPEQSETLGIYQDDPDTTPAEKCRYDACVVVPEPIPENSEGVQL 85 (154)
T ss_pred ecCCceEEEEEee-CcHHHHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCCCCHHHceeeEEEEcCCccCCCCCceeE
Confidence 3577777777554 58888999999999999999766643332 22222221111 11223555555322222333333
Q ss_pred EeeeCCceEEee
Q 015125 401 LATSGHKYAVWH 412 (413)
Q Consensus 401 ~~~s~~~~~~~~ 412 (413)
-.+.|-.|+|.+
T Consensus 86 ~~i~GG~YAV~r 97 (154)
T COG3449 86 GEIPGGLYAVAR 97 (154)
T ss_pred eeecCCceEEEE
Confidence 345666666653
No 488
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=25.35 E-value=1.1e+02 Score=29.76 Aligned_cols=61 Identities=7% Similarity=-0.025 Sum_probs=37.2
Q ss_pred hhhhHHHcCCCEEEcCCCCCCCCCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEcccc
Q 015125 48 KVPDISKSGFTSVWLPPATHSFAPE-GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 114 (413)
Q Consensus 48 ~L~yLk~lGv~~I~L~Pi~~~~~~~-gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH 114 (413)
.+..||++|++ +.++| ++.... -+.+.. .+.|.- +.++-.+.++.||+.||++-.++.+.|
T Consensus 112 ~l~~Lk~aG~~-~~~~~--Et~~~~l~~~~~~--~~~p~k-~~~~~l~~i~~a~~~Gi~~~s~~i~G~ 173 (322)
T TIGR03550 112 ELARLKPVNAS-MGLML--ETTSERLCKGEAH--YGSPGK-DPAVRLETIEDAGRLKIPFTTGILIGI 173 (322)
T ss_pred HHHHHHhhCCC-CCcch--hhhcccccccccc--CCCCCC-CHHHHHHHHHHHHHcCCCccceeeEeC
Confidence 46677787765 45553 322111 111111 122211 235678999999999999999999998
No 489
>PRK05926 hypothetical protein; Provisional
Probab=25.34 E-value=73 Score=31.70 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=28.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 82 LNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 82 id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
+.|.--+.++..+.++.||+.||++-.=+++-|.-.
T Consensus 199 ~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gEt 234 (370)
T PRK05926 199 LAPGRLSSQGFLEIHKTAHSLGIPSNATMLCYHRET 234 (370)
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCcccCceEEeCCCC
Confidence 335555678899999999999999987777776443
No 490
>PLN02656 tyrosine transaminase
Probab=25.19 E-value=81 Score=31.56 Aligned_cols=29 Identities=24% Similarity=0.214 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEccccCcC
Q 015125 89 EHLLKALLHKMKQHKVRAMADIVINHRVG 117 (413)
Q Consensus 89 ~~~~~~Lv~~~h~~Gi~VilD~V~NH~~~ 117 (413)
.++++++++.|+++|+-||.|-++.+...
T Consensus 188 ~~~~~~i~~~a~~~~~~ii~De~y~~~~~ 216 (409)
T PLN02656 188 YQHLKKIAETAEKLKILVIADEVYGHLAF 216 (409)
T ss_pred HHHHHHHHHHHHHcCCEEEEehhhhhccc
Confidence 58999999999999999999999887654
No 491
>PRK09082 methionine aminotransferase; Validated
Probab=25.19 E-value=65 Score=31.87 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEccccCc
Q 015125 88 SEHLLKALLHKMKQHKVRAMADIVINHRV 116 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~VilD~V~NH~~ 116 (413)
+.++++++++-|+++|+.||.|-++.+..
T Consensus 181 ~~~~~~~i~~~a~~~~i~li~De~y~~~~ 209 (386)
T PRK09082 181 SAADMRALWQLIAGTDIYVLSDEVYEHIV 209 (386)
T ss_pred CHHHHHHHHHHHHHCCEEEEEehhhhhhc
Confidence 46999999999999999999999986544
No 492
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=25.12 E-value=1.9e+02 Score=26.86 Aligned_cols=46 Identities=7% Similarity=0.122 Sum_probs=36.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 110 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~Gt~~~~~~Lv~~~h~~Gi~VilD~ 110 (413)
.++..+++....++.|.|+|++.|+. +.+++++++++ .++.|++=.
T Consensus 158 ~~~eai~Ra~ay~~AGAD~v~v~~~~---------------------~~~~~~~~~~~---~~~Pl~~~~ 203 (243)
T cd00377 158 GLDEAIERAKAYAEAGADGIFVEGLK---------------------DPEEIRAFAEA---PDVPLNVNM 203 (243)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCC---------------------CHHHHHHHHhc---CCCCEEEEe
Confidence 59999999999999999999998863 56888888887 345555443
No 493
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=25.11 E-value=60 Score=32.23 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 84 SSYGSEHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 84 ~~~Gt~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
...|...+++++++.||++|+.||+|-++-
T Consensus 150 np~g~~~dl~~I~~la~~~gi~livD~a~~ 179 (380)
T TIGR01325 150 NPLGELVDIAALAELAHAIGALLVVDNVFA 179 (380)
T ss_pred CCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 346788889999999999999999999854
No 494
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=25.04 E-value=74 Score=30.28 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=24.2
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCEEEEEEccc
Q 015125 84 SSYGS--EHLLKALLHKMKQHKVRAMADIVIN 113 (413)
Q Consensus 84 ~~~Gt--~~~~~~Lv~~~h~~Gi~VilD~V~N 113 (413)
..+|. .+.|+++|+.+++.|+.||+|+=++
T Consensus 65 ~~~G~~G~~~l~~~i~~l~~~g~~VilD~K~~ 96 (278)
T PRK00125 65 EAHGAEGLAQLERTIAYLREAGVLVIADAKRG 96 (278)
T ss_pred HhcCchhhhHHHHHHHHHHHCCCcEEEEeecC
Confidence 45554 3678899999999999999999554
No 495
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=25.03 E-value=65 Score=30.51 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=32.1
Q ss_pred ccccccCCceeEEEeeecCCCCCccHHHHHhhhhhHHHcCCCEEEcCCC
Q 015125 17 LGAVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPA 65 (413)
Q Consensus 17 ~~~~~~~~~~~i~~~f~~~~~~~g~~~gi~~~L~yLk~lGv~~I~L~Pi 65 (413)
.-|.+.- .-.+..+... +-+-+.+.|+.|.++||++|+|==|
T Consensus 107 edP~W~G--ny~VkYW~~e-----Wkdii~~~l~rL~d~GfdGvyLD~V 148 (300)
T COG2342 107 EDPEWPG--NYAVKYWEPE-----WKDIIRSYLDRLIDQGFDGVYLDVV 148 (300)
T ss_pred CCCCCCC--CceeeccCHH-----HHHHHHHHHHHHHHccCceEEEeee
Confidence 3566733 3677777777 6677789999999999999998543
No 496
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.01 E-value=3e+02 Score=25.72 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=39.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEcCCCCCCCCCCCCCcccCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEEc
Q 015125 41 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYG-SEHLLKALLHKMKQHKVRAMADIV 111 (413)
Q Consensus 41 ~~~gi~~~L~yLk~lGv~~I~L~Pi~~~~~~~gY~~~d~~~id~~~G-t~~~~~~Lv~~~h~~Gi~VilD~V 111 (413)
.++.+...++..++||++.|-+.+- ...+... ....+- ..+.++++++.|.++||+|.+..+
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~~-----~~~~~~~----~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~ 154 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLAGY-----DVYYEEH----DEETRRRFREGLKEAVELAARAQVTLAVEIM 154 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEecCc-----ccccCcC----CHHHHHHHHHHHHHHHHHHHHcCCEEEEeeC
Confidence 3556788889999999999965320 0001100 000000 135688999999999999999954
No 497
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=24.93 E-value=7.8e+02 Score=25.38 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 171 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 171 r~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
.+++.+.++... +.|+|-+++ |++..+.|.-..+++.+++
T Consensus 152 ~e~~~~~a~~l~-~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk 192 (467)
T PRK14041 152 LEYYLEFARELV-DMGVDSICIKDMAGLLTPKRAYELVKALK 192 (467)
T ss_pred HHHHHHHHHHHH-HcCCCEEEECCccCCcCHHHHHHHHHHHH
Confidence 467888888876 899998876 7788888877777776655
No 498
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=24.93 E-value=2.3e+02 Score=26.34 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhcCCCeEeeccc-CCCcHHHHHHHHHhhCC--CeEEEc
Q 015125 172 KDIIAWLRWLRNTVGFQDFRFDFA-RGYSAKYVKEYIEGARP--IFSVGE 218 (413)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfR~D~a-~~i~~~~~~~~~~~~~~--~~~vgE 218 (413)
..+-+++++.. ++|+|-+-+-.. -.+|.+-+.++++.++. ...+.|
T Consensus 71 ~~~~~Yl~~~k-~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~E 119 (237)
T TIGR03849 71 GKFDEYLNECD-ELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSE 119 (237)
T ss_pred hhHHHHHHHHH-HcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEecc
Confidence 44555666654 888888877654 56777777777777663 234555
No 499
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=24.87 E-value=7.6e+02 Score=25.27 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcCCCeEee-cccCCCcHHHHHHHHHhhC
Q 015125 172 KDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 211 (413)
Q Consensus 172 ~~l~~~~~~w~~~~gvDGfR~-D~a~~i~~~~~~~~~~~~~ 211 (413)
+++.+.++... +.|+|-+++ |++..+.|.-..+++.+++
T Consensus 154 ~~~~~~a~~l~-~~Gad~I~i~Dt~G~l~P~~v~~lv~alk 193 (448)
T PRK12331 154 DYFVKLAKEMQ-EMGADSICIKDMAGILTPYVAYELVKRIK 193 (448)
T ss_pred HHHHHHHHHHH-HcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 56778888876 899999887 7777788877777776665
No 500
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=24.80 E-value=1.8e+02 Score=27.78 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHcCCEEE-EEEccc
Q 015125 88 SEHLLKALLHKMKQHKVRAM-ADIVIN 113 (413)
Q Consensus 88 t~~~~~~Lv~~~h~~Gi~Vi-lD~V~N 113 (413)
+...+...++++.+.||.|| +|--++
T Consensus 101 d~~~~~~~v~~a~~aGIpVv~~d~~~~ 127 (322)
T COG1879 101 DPDALTPAVKKAKAAGIPVVTVDSDIP 127 (322)
T ss_pred ChhhhHHHHHHHHHCCCcEEEEecCCC
Confidence 46678999999999999998 444333
Done!