BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015126
(413 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96EX2|RNFT2_HUMAN RING finger and transmembrane domain-containing protein 2 OS=Homo
sapiens GN=RNFT2 PE=2 SV=2
Length = 444
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 152/287 (52%), Gaps = 25/287 (8%)
Query: 148 WVEQVLPFSLLLLVVFVRQHLQGFFVTVWITAVIFKSNDILRKQTALK----VIGIYWW- 202
W+++ LPF L+LL QH G V + + + +N LR+Q +LK V+ I W
Sbjct: 162 WLQKGLPFILILLAKLCFQHKLGIAVCIGMASTFAYANSTLREQVSLKEKRSVLVILWIL 221
Query: 203 -FRSDDILYPL-------------LMIPPSTIPPFWHAVFIILVNDTMVRQAAMAMKCLL 248
F + + LY L + P + F+ ++I+ + D +++ +A+KCL+
Sbjct: 222 AFLAGNTLYVLYTFSSQQLYNSLIFLKPNLEMLDFFDLLWIVGIADFVLKYITIALKCLI 281
Query: 249 LIYYKNGRGHNFRRQGQILTLVEYALLLYRALLPTPVWYRFFLNKDYGS--LFSSLTTGL 306
+ K + +G+ ++E L+R+L+P +WY++ + D + + L
Sbjct: 282 VALPKIILA--VKSKGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVL 339
Query: 307 YLTFKLTTVVDKVQSLFAAIRALSRKEVHYGSYATTEQVNAAGDLCAICQEKMHAPILLQ 366
Y K + +V + A++ L + +YG AT +Q AGD+CAICQ + P++L
Sbjct: 340 YSLCKSFDICGRVGGVRKALKLLCTSQ-NYGVRATGQQCTEAGDICAICQAEFREPLILL 398
Query: 367 CKHLFCEDCVSEWLERERTCPLCRALVKPADLRSFGDGSTSLLFQLF 413
C+H+FCE+C+ WL+RERTCPLCR+ V LR + DG+TS FQ++
Sbjct: 399 CQHVFCEECLCLWLDRERTCPLCRS-VAVDTLRCWKDGATSAHFQVY 444
>sp|Q5RAG4|RNFT2_PONAB RING finger and transmembrane domain-containing protein 2 OS=Pongo
abelii GN=RNFT2 PE=2 SV=1
Length = 444
Score = 142 bits (358), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 150/287 (52%), Gaps = 25/287 (8%)
Query: 148 WVEQVLPFSLLLLVVFVRQHLQGFFVTVWITAVIFKSNDILRKQTALK----VIGIYWW- 202
W+++ LPF L+LL QH G V + + + +N LR+Q +LK V+ I W
Sbjct: 162 WLQKGLPFILILLAKLCFQHKLGIAVCIGMASTFAYANSTLREQVSLKEKRSVLVILWIL 221
Query: 203 -FRSDDILYPL-------------LMIPPSTIPPFWHAVFIILVNDTMVRQAAMAMKCLL 248
F + + LY L + P F+ ++I+ + D +++ +A+KCL+
Sbjct: 222 AFLAGNTLYVLYTFSSQQLYNSLIFLKPNLETLDFFDLLWIVGIADFVLKYITIALKCLI 281
Query: 249 LIYYKNGRGHNFRRQGQILTLVEYALLLYRALLPTPVWYRFFLNKDYGS--LFSSLTTGL 306
+ K + +G+ ++E L+R+L+P +WY++ + D + + L
Sbjct: 282 VALPKIILA--VKSKGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVL 339
Query: 307 YLTFKLTTVVDKVQSLFAAIRALSRKEVHYGSYATTEQVNAAGDLCAICQEKMHAPILLQ 366
Y K + +V + A++ L + +YG AT +Q AGD+CAICQ + P++L
Sbjct: 340 YSLCKSFDICGRVGGVRKALKLLCTSQ-NYGVRATGQQCTEAGDICAICQAEFREPLILL 398
Query: 367 CKHLFCEDCVSEWLERERTCPLCRALVKPADLRSFGDGSTSLLFQLF 413
C+H+FCE+C+ WL+RERTCPL R+ V LR + DG+TS FQ++
Sbjct: 399 CQHVFCEECLCLWLDRERTCPLSRS-VAVDTLRCWKDGATSAHFQVY 444
>sp|Q3UF64|RNFT2_MOUSE RING finger and transmembrane domain-containing protein 2 OS=Mus
musculus GN=Rnft2 PE=2 SV=2
Length = 445
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 149/287 (51%), Gaps = 25/287 (8%)
Query: 148 WVEQVLPFSLLLLVVFVRQHLQGFFVTVWITAVIFKSNDILRKQTALK----VIGIYWW- 202
W+++ LPF L+LL QH G V + + + +N LR+Q +LK V+ I W
Sbjct: 163 WLQKGLPFILILLAKLCFQHKLGIAVCIGMASTFAYANSTLREQVSLKEKRSVLVILWIL 222
Query: 203 -------------FRSDDILYPLLMIPPS-TIPPFWHAVFIILVNDTMVRQAAMAMKCLL 248
F S + L+ + P+ F+ ++I+ + D +++ +A+KCL+
Sbjct: 223 AFLAGNTMYVLYTFSSQQLYSSLIFLKPNLETLDFFDLLWIVGIADFVLKYITIALKCLI 282
Query: 249 LIYYKNGRGHNFRRQGQILTLVEYALLLYRALLPTPVWYRFFLNKDYGS--LFSSLTTGL 306
+ K + +G+ ++E L+R+L+P +WY++ + D + + L
Sbjct: 283 VALPKIILA--VKSKGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVL 340
Query: 307 YLTFKLTTVVDKVQSLFAAIRALSRKEVHYGSYATTEQVNAAGDLCAICQEKMHAPILLQ 366
Y K + +V L A++ L + +YG AT +Q AG +CAICQ + P++L
Sbjct: 341 YSLCKSFDICGRVGGLRKALKLLCTSQ-NYGVRATGQQCTEAGAVCAICQAEFRDPMILL 399
Query: 367 CKHLFCEDCVSEWLERERTCPLCRALVKPADLRSFGDGSTSLLFQLF 413
C+H+FCE+C+ WL+RERTCPLCR+ V LR + DG+TS Q++
Sbjct: 400 CQHVFCEECLCLWLDRERTCPLCRS-VAVDTLRCWKDGATSAHLQVY 445
>sp|Q6NTV1|RNFT1_XENLA RING finger and transmembrane domain-containing protein 1
OS=Xenopus laevis GN=rnft1 PE=2 SV=2
Length = 416
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 99/399 (24%), Positives = 178/399 (44%), Gaps = 48/399 (12%)
Query: 56 VMSTSQESEQDRLTVNADSEARGQTQLPN----SALSTGEVSIQIIRQENGEAT------ 105
+M +S + +L N A +P + + G+V++ + Q++
Sbjct: 25 IMQSSSDHTHHQLGSNDSPSACMSLPVPQLSAEGSCTVGDVTVDLSSQDSQHVARSNSRR 84
Query: 106 ------GAGEDNEGNAIGEGETVPLAASEGSTSREGSYQSYDIHQFARWVEQVLPFSLLL 159
G G+ + P A++ S RE S ++ +W+E+ P+ L+
Sbjct: 85 VRPSTHGRSPSRHGHTHSHDASGPEDANDDS--REQSNSISEVFHLYKWLEKSFPYILIF 142
Query: 160 LVVFVRQHLQGFFVTVWITAVIFKSNDILRKQTALK------------------VIGIYW 201
V QH+ G V + + +N + Q L+ +Y+
Sbjct: 143 SAKLVVQHITGISVGIGLLTTFLYANKCIVNQVFLRDKCSKLQCLWVLVFLLFSSFLLYY 202
Query: 202 WFRSDDILYPLLMIPPSTIP-PFWHAVFIILVNDTMVRQAAMAMKCLLLIYYKNGRGHNF 260
F S + Y L+ + PS P F+ A++++ + D + + M +KC++L+ H
Sbjct: 203 TFSSQALYYSLVFMNPSLGPLHFFDALWVVGITDFIGKFFFMGLKCIILLVPSFVMSH-- 260
Query: 261 RRQGQILTLVEYALLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTTVVDKVQ 320
+ +G +E Y L+ TPVW+R+ + DYG+L S + L ++ K+
Sbjct: 261 KSKGYWYMALEELAQCYCTLVSTPVWFRYLI--DYGNLDSGAEWHFGILLALLYLILKIL 318
Query: 321 SLFAAIRALSR------KEVHYGSYATTEQVNAAGDLCAICQEKMHAPILLQCKHLFCED 374
+F + S + +YG+ AT Q + A +CAICQ + PI L C+H+FCE+
Sbjct: 319 IIFGQRKTSSDCLRLFLSQPNYGTTATKRQCSEADGMCAICQAEFTKPIALICQHVFCEE 378
Query: 375 CVSEWLERERTCPLCRALVKPADLRSFGDGSTSLLFQLF 413
C+S W +E+TCPLCR L+ + + DG+TSL ++F
Sbjct: 379 CISSWFNKEKTCPLCRTLISNHSHK-WKDGATSLQLRIF 416
>sp|Q5M7Z0|RNFT1_HUMAN RING finger and transmembrane domain-containing protein 1 OS=Homo
sapiens GN=RNFT1 PE=2 SV=2
Length = 435
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 167/378 (44%), Gaps = 53/378 (14%)
Query: 78 GQTQLPNSALSTGEVSIQIIRQENGEATGAGEDN-----------------EGNAIGEGE 120
G+ P+S G+V IQI A A N G++ E
Sbjct: 69 GEGSCPHS----GDVHIQINSIPKECAENASSRNIRSGVHSCAHGCVHSRLRGHSHSEAR 124
Query: 121 TVPLAASEGSTSREGSYQSYDIHQFARWVEQVLPFSLLLLVVFVRQHLQGFFVTVWITAV 180
A+E + GS + +W+++ LP+ L+L V V QH+ G + + +
Sbjct: 125 LTDDTAAE--SGDHGSSSFSEFRYLFKWLQKSLPYILILSVKLVMQHITGISLGIGLLTT 182
Query: 181 IFKSNDILRKQTALK------------------VIGIYWWFRSDDILYPLLMIPPSTIP- 221
+N + Q L+ + +Y+ F S + Y L+ + P+
Sbjct: 183 FMYANKSIVNQVFLRERSSKIQCAWLLVFLAGSSVLLYYTFHSQSLYYSLIFLNPTLDHL 242
Query: 222 PFWHAVFIILVNDTMVRQAAMAMKCLLLIYYKNGRGHNFRRQGQILTLVEYALLLYRALL 281
FW +I+ + D +++ M +KCL+L+ F+ +G L+E YR +
Sbjct: 243 SFWEVFWIVGITDFILKFFFMGLKCLILLV--PSFIMPFKSKGYWYMLLEELCQYYRTFV 300
Query: 282 PTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTTVVDKVQSLFAAIRALSR------KEVH 335
P PVW+R+ ++ YG + L + L ++ K+ F +R + +
Sbjct: 301 PIPVWFRYLIS--YGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQPS 358
Query: 336 YGSYATTEQVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 395
YG A+ Q + D+C+ICQ + PILL C+H+FCE+C++ W RE+TCPLCR ++
Sbjct: 359 YGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVIS- 417
Query: 396 ADLRSFGDGSTSLLFQLF 413
+ + DG+TS Q++
Sbjct: 418 DHINKWKDGATSSHLQIY 435
>sp|Q28GL3|RNFT1_XENTR RING finger and transmembrane domain-containing protein 1
OS=Xenopus tropicalis GN=rnft1 PE=2 SV=1
Length = 416
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 165/343 (48%), Gaps = 37/343 (10%)
Query: 97 IRQENGEA-TGAGEDNEGNAIGEGETVPLAASEGSTSREGSYQSYDIHQFARWVEQVLPF 155
+R NG + + G + +A G P A++ + SRE S ++ F +W+E+ P+
Sbjct: 85 VRPGNGRSLSRHGHTHSHDANG-----PEDAND-ADSREQSNSISEVFHFYKWLEKSFPY 138
Query: 156 SLLLLVVFVRQHLQGFFVTVWITAVIFKSNDILRKQTALK------------------VI 197
L+ V QH+ G V + + +N + Q L+ +
Sbjct: 139 ILIFSAKLVVQHITGISVGIGLLTTFLYANKCIVNQVFLRDKCSKLQCLWILVFLLFSSL 198
Query: 198 GIYWWFRSDDILYPLLMIPPSTIP-PFWHAVFIILVNDTMVRQAAMAMKCLLLIYYKNGR 256
+Y+ F S + Y L+ + PS P F+ A++++ + D + + M +KC++L+
Sbjct: 199 LLYYTFSSQALYYSLVFMNPSLGPLHFFDALWVVGITDFIGKFFFMGLKCIILLVPSFVM 258
Query: 257 GHNFRRQGQILTLVEYALLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTTVV 316
H + +G +E Y L+ TPVW+R+ + DYG+ S + L ++
Sbjct: 259 SH--KSKGYWYMALEEVAQCYCMLVSTPVWFRYLI--DYGNQNSGAEWHFGILLALLYLI 314
Query: 317 DKVQSLFAAIRALSRK------EVHYGSYATTEQVNAAGDLCAICQEKMHAPILLQCKHL 370
K+ +F + S + +YG+ AT Q + +CAICQ + PI+L C+H+
Sbjct: 315 LKLLIIFGQRKTSSNSLRLFLTQPNYGAAATKSQCSEVDGMCAICQAEFIKPIVLVCQHV 374
Query: 371 FCEDCVSEWLERERTCPLCRALVKPADLRSFGDGSTSLLFQLF 413
FCE+C+S W +E+TCPLCR ++ + + DG+TSL ++F
Sbjct: 375 FCEECISLWFNKEKTCPLCRTVISNQSHK-WKDGATSLQLRIF 416
>sp|Q6NZ21|RNFT1_DANRE RING finger and transmembrane domain-containing protein 1 OS=Danio
rerio GN=rnft1 PE=2 SV=2
Length = 419
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/372 (26%), Positives = 162/372 (43%), Gaps = 70/372 (18%)
Query: 106 GAGEDNEGNAIGEGETVPLAASEGSTSREGS----------------------------- 136
GAG + G GE VP+ +S GST+ G+
Sbjct: 54 GAGSSS-GTETGEDVRVPMGSSSGSTNGRGATSRRMRTASHSHSHTHGHGHSHEHESDSG 112
Query: 137 ----------YQSYDIHQFARWVEQVLPFSLLLLVVFVRQHLQGFFVTVWITAVIFKSND 186
++ RW+++ LPF ++L V QH G V V + N
Sbjct: 113 ESDLESGESSSSISELRYLLRWLKKSLPFIVILCAKLVIQHALGLAVAVGLFTTFMYVNK 172
Query: 187 ILRKQTALK------------------VIGIYWWFRSDDILYPLLMIPPSTIP--PFWHA 226
++ Q L + +++ F + LY L +TI FW
Sbjct: 173 SIQTQVFLHDRRTNLHCAWLLLFLTSSSLLVFYTFHTQS-LYRCLFFANATIDYHNFWEV 231
Query: 227 VFIILVNDTMVRQAAMAMKCLLLIYYKNGRGHNFRRQGQILTLVEYALLLYRALLPTPVW 286
++ + V + +++ M KCL+L+ +RR+GQ L+E LY+ + P P+W
Sbjct: 232 LWSVGVTNFILKFIFMGFKCLILLV--PCPLMTYRRRGQWYMLIEEVGQLYQVIAPVPLW 289
Query: 287 YRFFLNKD-----YGSLFSSLTTGLYLTFKLTTVVDKVQSLFAAIRALSRKEVHYGSYAT 341
+R+ ++ D G L LYL KL + SL +R EV+ G+ A+
Sbjct: 290 FRYLVSYDEMDTSVGLTLGILLALLYLIMKLLALYGLSGSLQKTLRTFFSPEVN-GAPAS 348
Query: 342 TEQVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLRSF 401
Q+ AGD+C ICQ P +L C+H+FCE+C+++WL +ERTCPLCR ++ + +
Sbjct: 349 PAQIREAGDICPICQADFKQPRVLVCQHIFCEECIAQWLNQERTCPLCRTVITD-KVHKW 407
Query: 402 GDGSTSLLFQLF 413
DG+TS Q++
Sbjct: 408 KDGATSAHLQIY 419
>sp|Q9DCN7|RNFT1_MOUSE RING finger and transmembrane domain-containing protein 1 OS=Mus
musculus GN=Rnft1 PE=2 SV=1
Length = 395
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/387 (25%), Positives = 170/387 (43%), Gaps = 47/387 (12%)
Query: 69 TVNADSEAR--GQTQLPNSALSTGEVSIQIIR-----QEN--------GEATGAGEDNEG 113
T + D+ A G ++ +L G+V IQI EN G T A G
Sbjct: 14 TAHEDAAASPCGHSRSTEGSLHPGDVHIQINSGPKEYSENPSSRNPRSGVCTCAHGCVHG 73
Query: 114 N--AIGEGETVPLAASEGSTSREGSYQSYDIHQFARWVEQVLPFSLLLLVVFVRQHLQGF 171
+ E P + GS + +W+++ LP+ L+L + V QH+ G
Sbjct: 74 RFRSYSHSEARPPDDFATESGEHGSGSFSEFRYLFKWLQKSLPYILILGIKLVMQHITGI 133
Query: 172 FVTVWITAVIFKSNDILRKQTALK------------------VIGIYWWFRSDDILYPLL 213
+ + + +N + Q L+ + +Y+ F S + Y L+
Sbjct: 134 SLGIGLLTTFMYANKSIVNQVFLRERSSKLRCAWLLVFLAGSSVLLYYTFHSQSLHYSLI 193
Query: 214 MIPPSTIP-PFWHAVFIILVNDTMVRQAAMAMKCLLLIYYKNGRGHNFRRQGQILTLVEY 272
+ P+ FW ++I+ + D +++ M +KCL+L+ F+ +G L+E
Sbjct: 194 FLNPTLEQLSFWEVLWIVGITDFILKFFFMGLKCLILLV--PSFIMPFKSKGYWYMLLEE 251
Query: 273 ALLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTTVVDKVQSLFAAIRALSR- 331
YR +P PVW+R+ ++ YG + T L + L ++ K+ F +R +
Sbjct: 252 LCQYYRIFVPIPVWFRYLIS--YGEFGNVTTWSLGILLALLYLILKLLDFFGHLRTFRQV 309
Query: 332 -----KEVHYGSYATTEQVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTC 386
YG A+ Q + +C ICQ + P+LL C+H+FCE+C++ W RE+TC
Sbjct: 310 LRVFFTRPSYGVPASKRQCSDMDGICTICQAEFQKPVLLFCQHIFCEECITLWFNREKTC 369
Query: 387 PLCRALVKPADLRSFGDGSTSLLFQLF 413
PLCR ++ + + DG+TS Q++
Sbjct: 370 PLCRTVISEC-INKWKDGATSSHLQMY 395
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 340 ATTEQVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 399
AT EQ+ D+C+IC + M++ ++ C H F C+ +WL + TCPLC +K +
Sbjct: 525 ATKEQLEQHNDICSICYQDMNSAVITPCSHFFHPGCLKKWLYVQETCPLCHCQLKSLSQQ 584
Query: 400 SFGDGSTS 407
+ G+ +S
Sbjct: 585 ATGESGSS 592
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 299 FSSLTTGLYLTFKLTTVVDKVQSLFAAIRALSRKEVHYGSYATTEQVNAAGDLCAICQEK 358
+SL + L + V +++ +R + E + + AT E++ D CAIC +
Sbjct: 289 MASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARF-AVATPEELAVNNDDCAICWDS 347
Query: 359 MHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 397
M A L C HLF C+ WLE++ +CP CR + AD
Sbjct: 348 MQAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIAD 386
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 299 FSSLTTGLYLTFKLTTVVDKVQSLFAAIRALSRKEVHYGSYATTEQVNAAGDLCAICQEK 358
+SL + L + V +++ +R + E + + AT E++ D CAIC +
Sbjct: 289 MASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARF-AVATPEELAVNNDDCAICWDS 347
Query: 359 MHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 397
M A L C HLF C+ WLE++ +CP CR + AD
Sbjct: 348 MQAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIAD 386
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 340 ATTEQVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 394
AT EQ+ D+CAIC + M + ++ C H F C+ +WL + TCPLC +K
Sbjct: 525 ATKEQLEKHNDICAICYQDMKSAVITPCSHFFHAGCLKKWLYVQETCPLCHCHLK 579
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 340 ATTEQVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 394
AT EQ+ D+CAIC + M + ++ C H F C+ +WL + TCPLC +K
Sbjct: 525 ATQEQLEKHNDICAICYQDMKSAVITPCSHFFHAGCLKKWLYVQDTCPLCHCHLK 579
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 340 ATTEQVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 399
+T EQ+ D+C+IC + M++ ++ C H F C+ +WL + TCPLC +K +
Sbjct: 525 STKEQLEQHNDICSICYQDMNSAVITPCSHFFHPGCLKKWLYVQETCPLCHCQLKSLSQQ 584
Query: 400 SFGDGSTS 407
+ + +S
Sbjct: 585 AVAESGSS 592
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 25/132 (18%)
Query: 292 NKDYGSLFSSLTTG-----LYLTFKLTTVVDKVQSLFA------AIR---------ALSR 331
NK L++ L TG LY+ F V LFA A+R +SR
Sbjct: 201 NKAVYMLYTELFTGFIKVLLYMAFMTIMVKVHTFPLFAIRPMYLAMRQFKKAVTDAVMSR 260
Query: 332 KEVHYGSY----ATTEQVNAAGDLCAICQEKM-HAPILLQCKHLFCEDCVSEWLERERTC 386
+ + + AT E++ A ++C IC+E+M L C H+F C+ W +R++TC
Sbjct: 261 RAIRNMNTLYPDATAEELQAMDNVCIICREEMVSGAKRLPCNHIFHTSCLRSWFQRQQTC 320
Query: 387 PLCRALVKPADL 398
P CR V A L
Sbjct: 321 PTCRMDVLRASL 332
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 47/183 (25%)
Query: 258 HNFRRQGQILTLV---EYALLLYRALLPTPVWYRFFL------------NKDYGSLFSSL 302
H+ +G + LV EYA+L+ L ++ ++ L NK L++ L
Sbjct: 161 HSILTRGASVQLVFGFEYAILMTMVLT---IFIKYVLHSVDLQSENPWDNKAVYMLYTEL 217
Query: 303 TTG-----LYLTFKLTTVVDKVQS--LFA------AIRA---------LSRKEVHYGSY- 339
TG LY+ F T++ KV + LFA A+R +SR+ + +
Sbjct: 218 FTGFIKVLLYMAF--MTIMIKVHTFPLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTL 275
Query: 340 ---ATTEQVNAAGDLCAICQEKM-HAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 395
AT E++ A ++C IC+E+M L C H+F C+ W +R++TCP CR V
Sbjct: 276 YPDATPEELQAVDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLR 335
Query: 396 ADL 398
A L
Sbjct: 336 ASL 338
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 25/132 (18%)
Query: 292 NKDYGSLFSSLTTG-----LYLTFKLTTVVDKVQSLFA------AIRA---------LSR 331
NK L++ L TG LY+ F V LFA A+R +SR
Sbjct: 201 NKAVYMLYTELFTGFIKVLLYVAFMTIMVKVHTFPLFAIRPMYLAMRQFKKAVTDAIMSR 260
Query: 332 KEVHYGSY----ATTEQVNAAGDLCAICQEKM-HAPILLQCKHLFCEDCVSEWLERERTC 386
+ + + AT E++ A ++C IC+E+M L C H+F C+ W +R++TC
Sbjct: 261 RAIRNMNTLYPDATAEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTC 320
Query: 387 PLCRALVKPADL 398
P CR V A L
Sbjct: 321 PTCRMDVLRASL 332
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 29/134 (21%)
Query: 292 NKDYGSLFSSLTTG-----LYLTFKLTTVVDKVQS--LFA------AIRA---------L 329
NK L++ L TG LY+ F T++ KV + LFA A+R +
Sbjct: 207 NKAVYMLYTELFTGFIKVLLYMAF--MTIMIKVHTFPLFAIRPMYLAMRQFKKAVTDAIM 264
Query: 330 SRKEVHYGSY----ATTEQVNAAGDLCAICQEKM-HAPILLQCKHLFCEDCVSEWLERER 384
SR+ + + AT E++ A ++C IC+E+M L C H+F C+ W +R++
Sbjct: 265 SRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQ 324
Query: 385 TCPLCRALVKPADL 398
TCP CR V A L
Sbjct: 325 TCPTCRMDVLRASL 338
>sp|Q7KRW1|TRC8_DROME Protein TRC8 homolog OS=Drosophila melanogaster GN=Trc8 PE=1 SV=1
Length = 809
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 331 RKEVHYGSY---ATTEQVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCP 387
R VH S AT Q+ A D+CAIC ++M++ + +C+H F C+ +WL + CP
Sbjct: 597 RSAVHKISALPEATPAQLQAFDDVCAICYQEMYSAKITRCRHFFHGVCLRKWLYVQDRCP 656
Query: 388 LCRALVKPAD 397
LC ++ D
Sbjct: 657 LCHEIMMYTD 666
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 352 CAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 394
C IC++ + P+L QC H FC C+ E+L +E CPLC A ++
Sbjct: 32 CHICKDMLQTPVLTQCGHTFCSLCIREYLNKESRCPLCLAELR 74
>sp|Q9UUF0|PEX10_SCHPO Peroxisome biogenesis factor 10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pas4 PE=3 SV=1
Length = 306
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 352 CAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADL 398
C++C E +H P +C H+FC C++ W ++ CPLCRA P+ +
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLCRAFSSPSKI 302
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 43/189 (22%)
Query: 242 MAMKCLLLIYYKNGRGHNFRRQGQILTLV---EYALLLYRALLPTPVWYRFFL------- 291
M + ++ + N H+ +G + LV EYA+L+ +L T + Y
Sbjct: 145 MVLLGVMDFLFVNHACHSIITRGASVQLVFGFEYAILM-TMVLTTFIKYTLHTIDLQSEN 203
Query: 292 ---NKDYGSLFSSLTTG-----LYLTFKLTTVVDKVQS--LFA------AIRA------- 328
NK L++ L TG LY+ F T++ KV + LFA A+R
Sbjct: 204 PWDNKAVYMLYTELFTGFIKVLLYMAF--MTIMIKVHTFPLFAIRPMYLAMRQFKKAVTD 261
Query: 329 --LSRKEVHYGSY----ATTEQVNAAGDLCAICQEKM-HAPILLQCKHLFCEDCVSEWLE 381
+SR+ + + AT E + A ++C IC+E+M L C H+F C+ W +
Sbjct: 262 AIMSRRAIRNMNTLYPDATPEDLQATDNVCIICREEMVTGAKKLPCNHIFHSSCLRSWFQ 321
Query: 382 RERTCPLCR 390
R++TCP CR
Sbjct: 322 RQQTCPTCR 330
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 346 NAAGDLCAIC----QEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 399
+ AG CA+C +EK +A +L CKH+F CV WL + TCP+CR +P+ R
Sbjct: 94 DVAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEPSHPR 151
>sp|Q7ZWF4|RN145_DANRE RING finger protein 145 OS=Danio rerio GN=rnf145 PE=2 SV=1
Length = 685
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 340 ATTEQVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 394
A+T Q+ D+C+IC + M + ++ C H F C+ +WL + TCPLC +K
Sbjct: 525 ASTLQLQQHNDICSICFQDMKSAVITPCSHFFHAACLKKWLYVQETCPLCHGQLK 579
>sp|Q5A4N5|RAD18_CANAL Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=RAD18 PE=3
SV=1
Length = 378
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 352 CAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALV 393
C IC++ ++AP+ QC H +C C+ E+L R+ CPLC+ V
Sbjct: 29 CYICKDLLNAPVRTQCDHTYCSQCIREFLLRDNRCPLCKTEV 70
>sp|Q2TBT8|RN151_BOVIN RING finger protein 151 OS=Bos taurus GN=RNF151 PE=2 SV=1
Length = 240
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 351 LCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 394
LC++C + P+ L C H+FC+ C+ WL R++TCP CR V+
Sbjct: 19 LCSVCHGVLKRPVRLPCSHIFCKKCILRWLARQKTCPCCRKEVR 62
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 12/94 (12%)
Query: 309 TFKLTTVVDKVQSLFAAIRA-----LSRKEVHYGS----YATTEQVNAAGDLCAICQEKM 359
TF L +V QS+ A +A LSR+ ++ + + ++++A C IC+E+M
Sbjct: 240 TFPLFSVRPFYQSVRALHKAFLDVILSRRAINAMNSQFPVVSNDELSAMDATCIICREEM 299
Query: 360 ---HAPILLQCKHLFCEDCVSEWLERERTCPLCR 390
+P L C H+F C+ W +R++TCP CR
Sbjct: 300 TVESSPKRLPCSHVFHAHCLRSWFQRQQTCPTCR 333
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 340 ATTEQVNAAGDLCAICQEKM--HAPILLQCKHLFCEDCVSEWLERERTCPLCR 390
AT E++ + ++C IC+E M H+ L C H+F C+ W +R++TCP CR
Sbjct: 277 ATPEELRQSDNICIICREDMVNHSK-KLPCGHIFHTTCLRSWFQRQQTCPTCR 328
>sp|Q2KHN1|RN151_HUMAN RING finger protein 151 OS=Homo sapiens GN=RNF151 PE=2 SV=1
Length = 245
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 351 LCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 394
+C++C + P L C H+FC+ C+ WL R++TCP CR VK
Sbjct: 19 VCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKEVK 62
>sp|Q6BLM3|RAD18_DEBHA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD18 PE=3 SV=2
Length = 491
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 352 CAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRA 391
C IC+E + AP++ C H FC C+ E+L CPLC+A
Sbjct: 36 CYICKEFLKAPVITSCNHTFCSHCIREYLIVNSHCPLCKA 75
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 309 TFKLTTVVDKVQSLFAAIRA-----LSRKEVHYGS----YATTEQVNAAGDLCAICQEKM 359
TF L +V QS+ A +A LSR+ ++ + + E + A C IC+E+M
Sbjct: 240 TFPLFSVRPFYQSVRALHKAFLDVILSRRAINAMNSQFPVVSAEDLAAMDATCIICREEM 299
Query: 360 ---HAPILLQCKHLFCEDCVSEWLERERTCPLCR 390
+P L C H+F C+ W +R++TCP CR
Sbjct: 300 TVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTCR 333
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 352 CAICQEKMHAP----ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLRSFGDGSTS 407
CA+C + +L +CKH F +CV WL+ TCPLCR V P D+ GD ++
Sbjct: 146 CAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLIGDCNSW 205
Query: 408 LLFQL 412
Q
Sbjct: 206 FELQF 210
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 352 CAICQEKMHA----PILLQCKHLFCEDCVSEWLERERTCPLCRALVK-PADLRSFGDGST 406
C++C K +L +C+H F C+ +WLE+ TCPLCR V DL G+ ST
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNSST 183
Query: 407 SL 408
SL
Sbjct: 184 SL 185
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 343 EQVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADL 398
E+ + LC +C E+ P C HLFC +C++ W + CPLCR P L
Sbjct: 264 ERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKL 319
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 15/76 (19%)
Query: 343 EQVNAAGDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLERERTCPLCRALVKPADL 398
+++ GD CA+C E ++ P +L C H+F + CV WL RTCP+C+ + L
Sbjct: 268 KEIGPDGDSCAVCIE-LYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCPMCKCDI----L 322
Query: 399 RSFG------DGSTSL 408
++ G DGS SL
Sbjct: 323 KALGIEVDVEDGSVSL 338
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 343 EQVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADL 398
E+ + LC +C E+ P C HLFC +C++ W + CPLCR P L
Sbjct: 264 ERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKL 319
>sp|Q9D304|RN128_MOUSE E3 ubiquitin-protein ligase RNF128 OS=Mus musculus GN=Rnf128 PE=1
SV=1
Length = 428
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 15/76 (19%)
Query: 343 EQVNAAGDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLERERTCPLCRALVKPADL 398
+++ GD CA+C E ++ P +L C H+F + CV WL RTCP+C+ + L
Sbjct: 268 KEIGPDGDSCAVCIE-LYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCPMCKCDI----L 322
Query: 399 RSFG------DGSTSL 408
++ G DGS SL
Sbjct: 323 KALGIEVDVEDGSVSL 338
>sp|Q8VYC8|RIN2_ARATH E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2
PE=1 SV=1
Length = 578
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 340 ATTEQVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE----RTCPLCR 390
AT+E++ A D CAIC+E M L C HLF C+ WL++ +CP CR
Sbjct: 325 ATSEELRAYDDECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCR 379
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 338 SYATTEQVNAAGDLCAIC----QEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALV 393
+ T+ V A+ CA+C +E+ A L CKH+F DCV WL TCP+CR V
Sbjct: 94 TVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEV 153
Query: 394 KP 395
+P
Sbjct: 154 EP 155
>sp|Q9HCM9|TRI39_HUMAN E3 ubiquitin-protein ligase TRIM39 OS=Homo sapiens GN=TRIM39 PE=1
SV=2
Length = 518
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 344 QVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEW---LERERTCPLCRALVKPADLR 399
QV A+ C++C E + P++++C H FC+ C++ W LER+ CP+CR + LR
Sbjct: 24 QVEAS---CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLR 79
>sp|Q1XHU0|TRI39_PANTR E3 ubiquitin-protein ligase TRIM39 OS=Pan troglodytes GN=TRIM39
PE=3 SV=1
Length = 518
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 344 QVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEW---LERERTCPLCRALVKPADLR 399
QV A+ C++C E + P++++C H FC+ C++ W LER+ CP+CR + LR
Sbjct: 24 QVEAS---CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLR 79
>sp|Q29RU0|RN128_BOVIN E3 ubiquitin-protein ligase RNF128 OS=Bos taurus GN=RNF128 PE=2
SV=1
Length = 431
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 15/76 (19%)
Query: 343 EQVNAAGDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLERERTCPLCRALVKPADL 398
+++ GD CA+C E ++ P +L C H+F + CV WL RTCP+C+ + L
Sbjct: 271 KEIGPDGDSCAVCIE-LYKPNDLVRILTCNHVFHKTCVDPWLLEHRTCPMCKCDI----L 325
Query: 399 RSFG------DGSTSL 408
++ G DGS SL
Sbjct: 326 KALGIEVDVEDGSVSL 341
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 15/75 (20%)
Query: 344 QVNAAGDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 399
++ GD CA+C E ++ P +L C H+F + CV WL RTCP+C+ + L+
Sbjct: 269 EIGPDGDSCAVCIE-LYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCPMCKCDI----LK 323
Query: 400 SFG------DGSTSL 408
+ G DGS SL
Sbjct: 324 ALGIEVDVEDGSVSL 338
>sp|Q6MFZ5|TRI39_RAT E3 ubiquitin-protein ligase TRIM39 OS=Rattus norvegicus GN=Trim39
PE=2 SV=1
Length = 488
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 344 QVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEW---LERERTCPLCRALVKPADLR 399
QV A+ C++C E + P++++C H FC+ C++ W LER+ CP+CR + LR
Sbjct: 24 QVEAS---CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLR 79
>sp|Q9ESN2|TRI39_MOUSE E3 ubiquitin-protein ligase TRIM39 OS=Mus musculus GN=Trim39 PE=2
SV=1
Length = 488
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 344 QVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEW---LERERTCPLCRALVKPADLR 399
QV A+ C++C E + P++++C H FC+ C++ W LER+ CP+CR + LR
Sbjct: 24 QVEAS---CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLR 79
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 348 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADL 398
A C +C M P +C H+FC CV +W++ + CPLCRA ++ + L
Sbjct: 241 ASRTCMLCLSPMKDPSCGECGHVFCWKCVLDWVKERQECPLCRAKMRESQL 291
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 352 CAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 394
C IC E + L C H FC C++EW++R+ CP+CR +K
Sbjct: 404 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 446
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 352 CAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 394
C IC E + L C H FC C++EW++R+ CP+CR +K
Sbjct: 405 CIICSEYFVEAVTLNCAHSFCSYCINEWMKRKVECPICRKDIK 447
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 352 CAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 394
C IC E + L C H FC C++EW++R+ CP+CR +K
Sbjct: 403 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 445
>sp|Q9CQ29|RN151_MOUSE RING finger protein 151 OS=Mus musculus GN=Rnf151 PE=1 SV=1
Length = 239
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 351 LCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALV 393
LC++C + P L C H+FC+ C+ WL R+ TCP CR V
Sbjct: 19 LCSVCHGVLKRPTRLPCSHIFCKKCIFRWLARQNTCPCCRKEV 61
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,060,949
Number of Sequences: 539616
Number of extensions: 5874184
Number of successful extensions: 16769
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 369
Number of HSP's that attempted gapping in prelim test: 15880
Number of HSP's gapped (non-prelim): 1102
length of query: 413
length of database: 191,569,459
effective HSP length: 120
effective length of query: 293
effective length of database: 126,815,539
effective search space: 37156952927
effective search space used: 37156952927
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)