Query 015126
Match_columns 413
No_of_seqs 291 out of 1865
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 07:09:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ect_A Ring finger protein 126 99.4 5.9E-13 2E-17 104.5 5.3 62 346-407 12-76 (78)
2 2djb_A Polycomb group ring fin 99.3 1.7E-12 5.8E-17 100.6 4.9 54 347-400 13-67 (72)
3 2d8t_A Dactylidin, ring finger 99.3 7.6E-13 2.6E-17 102.3 1.7 52 347-398 13-64 (71)
4 3ng2_A RNF4, snurf, ring finge 99.3 1.1E-12 3.7E-17 100.8 2.5 53 347-399 8-67 (71)
5 2ea6_A Ring finger protein 4; 99.2 2.2E-12 7.6E-17 98.2 2.8 50 346-395 12-68 (69)
6 2ysl_A Tripartite motif-contai 99.2 4.8E-12 1.6E-16 97.8 4.4 52 347-398 18-72 (73)
7 2xeu_A Ring finger protein 4; 99.2 2.3E-12 7.8E-17 96.7 2.4 52 349-400 3-61 (64)
8 1x4j_A Ring finger protein 38; 99.2 2.7E-12 9.3E-17 100.1 2.8 50 347-396 21-73 (75)
9 1iym_A EL5; ring-H2 finger, ub 99.2 5E-12 1.7E-16 92.5 3.9 47 348-394 4-54 (55)
10 2ecy_A TNF receptor-associated 99.2 6.4E-12 2.2E-16 95.6 4.2 52 347-398 13-65 (66)
11 2kiz_A E3 ubiquitin-protein li 99.2 6.9E-12 2.4E-16 96.1 4.1 50 346-395 11-63 (69)
12 2yur_A Retinoblastoma-binding 99.2 1E-11 3.4E-16 96.9 4.7 51 347-397 13-66 (74)
13 2ecm_A Ring finger and CHY zin 99.2 7.3E-12 2.5E-16 91.5 3.4 47 348-394 4-54 (55)
14 4ayc_A E3 ubiquitin-protein li 99.2 6.1E-12 2.1E-16 109.8 3.5 49 348-396 52-100 (138)
15 2ecw_A Tripartite motif-contai 99.2 1.3E-11 4.5E-16 97.4 5.0 53 347-399 17-75 (85)
16 2ecn_A Ring finger protein 141 99.2 5E-12 1.7E-16 97.1 2.1 50 347-397 13-62 (70)
17 1chc_A Equine herpes virus-1 r 99.2 8.4E-12 2.9E-16 95.2 3.4 48 348-395 4-52 (68)
18 1t1h_A Gspef-atpub14, armadill 99.2 9.9E-12 3.4E-16 97.4 3.8 53 347-399 6-59 (78)
19 2csy_A Zinc finger protein 183 99.2 9.7E-12 3.3E-16 98.4 3.7 48 347-394 13-60 (81)
20 2l0b_A E3 ubiquitin-protein li 99.2 7.8E-12 2.7E-16 101.6 3.0 49 347-395 38-89 (91)
21 2ct2_A Tripartite motif protei 99.2 1E-11 3.5E-16 99.1 3.7 57 347-403 13-76 (88)
22 2ecv_A Tripartite motif-contai 99.2 1.5E-11 5.2E-16 97.1 4.5 52 347-398 17-74 (85)
23 1v87_A Deltex protein 2; ring- 99.2 1.3E-11 4.6E-16 103.6 4.3 61 348-409 24-107 (114)
24 2ecl_A Ring-box protein 2; RNF 99.2 8E-12 2.7E-16 99.5 2.6 50 347-396 13-77 (81)
25 2ep4_A Ring finger protein 24; 99.2 1.5E-11 5.3E-16 95.4 4.1 50 347-396 13-65 (74)
26 2egp_A Tripartite motif-contai 99.2 6.5E-12 2.2E-16 98.4 1.6 52 347-398 10-68 (79)
27 3lrq_A E3 ubiquitin-protein li 99.1 1.1E-11 3.8E-16 102.4 2.6 53 347-399 20-74 (100)
28 3ztg_A E3 ubiquitin-protein li 99.1 3E-11 1E-15 97.6 4.0 47 347-393 11-60 (92)
29 2y43_A E3 ubiquitin-protein li 99.1 2.2E-11 7.7E-16 99.9 3.2 51 347-397 20-71 (99)
30 3fl2_A E3 ubiquitin-protein li 99.1 4.6E-11 1.6E-15 102.0 3.8 49 347-395 50-99 (124)
31 1g25_A CDK-activating kinase a 99.1 7.9E-11 2.7E-15 89.2 4.0 51 349-399 3-59 (65)
32 2ysj_A Tripartite motif-contai 99.1 8.1E-11 2.8E-15 88.5 4.0 43 347-389 18-63 (63)
33 3dpl_R Ring-box protein 1; ubi 99.1 8.1E-11 2.8E-15 98.8 4.3 47 348-394 36-100 (106)
34 2ecj_A Tripartite motif-contai 99.1 8.8E-11 3E-15 86.5 3.9 43 347-389 13-58 (58)
35 1jm7_A BRCA1, breast cancer ty 99.1 8.3E-11 2.9E-15 98.0 4.3 51 349-399 21-74 (112)
36 2ckl_A Polycomb group ring fin 99.1 8.8E-11 3E-15 97.9 4.3 50 347-396 13-63 (108)
37 2kr4_A Ubiquitin conjugation f 99.0 1.2E-10 4.2E-15 93.6 3.3 51 348-398 13-63 (85)
38 4ap4_A E3 ubiquitin ligase RNF 99.0 1.2E-10 4.3E-15 99.1 3.5 53 348-400 6-65 (133)
39 2kre_A Ubiquitin conjugation f 99.0 1.7E-10 5.8E-15 95.7 4.0 52 348-399 28-79 (100)
40 1z6u_A NP95-like ring finger p 99.0 1.8E-10 6.2E-15 102.2 3.9 50 347-396 76-126 (150)
41 1wgm_A Ubiquitin conjugation f 99.0 2.5E-10 8.6E-15 94.4 4.2 52 348-399 21-73 (98)
42 1rmd_A RAG1; V(D)J recombinati 99.0 1.8E-10 6.1E-15 97.2 2.7 52 347-398 21-73 (116)
43 3l11_A E3 ubiquitin-protein li 99.0 8.1E-11 2.8E-15 99.1 0.5 47 348-394 14-61 (115)
44 3hct_A TNF receptor-associated 98.9 1.7E-10 5.8E-15 97.9 2.1 51 347-397 16-67 (118)
45 2ckl_B Ubiquitin ligase protei 98.9 2.2E-10 7.6E-15 102.5 2.2 48 348-395 53-102 (165)
46 4ap4_A E3 ubiquitin ligase RNF 98.9 2.3E-10 7.8E-15 97.5 1.3 54 346-399 69-129 (133)
47 2vje_A E3 ubiquitin-protein li 98.9 5.5E-10 1.9E-14 85.0 3.0 47 348-394 7-56 (64)
48 2vje_B MDM4 protein; proto-onc 98.9 5.5E-10 1.9E-14 84.7 2.9 48 347-394 5-55 (63)
49 1jm7_B BARD1, BRCA1-associated 98.9 5.4E-10 1.9E-14 94.6 3.1 50 347-398 20-70 (117)
50 4a0k_B E3 ubiquitin-protein li 98.9 1.9E-10 6.5E-15 98.2 0.1 47 348-394 47-111 (117)
51 2c2l_A CHIP, carboxy terminus 98.9 1.8E-09 6.1E-14 103.0 6.6 51 348-398 207-258 (281)
52 1bor_A Transcription factor PM 98.9 5.2E-10 1.8E-14 82.7 1.8 45 348-395 5-49 (56)
53 2d8s_A Cellular modulator of i 98.9 1.4E-09 4.9E-14 86.6 4.4 50 347-396 13-71 (80)
54 4ic3_A E3 ubiquitin-protein li 98.8 8E-10 2.8E-14 86.3 2.1 44 347-394 22-66 (74)
55 2y1n_A E3 ubiquitin-protein li 98.8 1.6E-09 5.4E-14 109.7 4.3 47 350-396 333-380 (389)
56 3knv_A TNF receptor-associated 98.8 9.7E-10 3.3E-14 96.6 1.7 48 347-394 29-77 (141)
57 1e4u_A Transcriptional repress 98.8 3.6E-09 1.2E-13 83.9 3.9 52 347-398 9-65 (78)
58 2yu4_A E3 SUMO-protein ligase 98.8 1.7E-09 6E-14 88.3 1.6 50 348-397 6-65 (94)
59 2ea5_A Cell growth regulator w 98.7 8.2E-09 2.8E-13 79.5 4.1 47 345-395 11-58 (68)
60 2ecg_A Baculoviral IAP repeat- 98.7 4.8E-09 1.6E-13 81.9 2.5 44 348-395 24-68 (75)
61 2f42_A STIP1 homology and U-bo 98.7 1.1E-08 3.8E-13 93.4 4.6 51 348-398 105-156 (179)
62 3hcs_A TNF receptor-associated 98.7 4.5E-09 1.6E-13 94.3 1.8 51 347-397 16-67 (170)
63 2yho_A E3 ubiquitin-protein li 98.6 6.4E-09 2.2E-13 82.4 1.8 55 348-407 17-72 (79)
64 2bay_A PRE-mRNA splicing facto 98.5 2.4E-08 8.3E-13 75.4 2.3 55 349-403 3-58 (61)
65 2ct0_A Non-SMC element 1 homol 98.5 7.7E-08 2.6E-12 75.6 4.7 47 348-394 14-63 (74)
66 3t6p_A Baculoviral IAP repeat- 98.4 7.4E-08 2.5E-12 96.4 1.9 43 348-394 294-337 (345)
67 3htk_C E3 SUMO-protein ligase 98.4 8.9E-08 3.1E-12 91.9 1.9 51 349-399 181-236 (267)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.2 6.3E-07 2.1E-11 67.4 3.4 48 347-394 4-58 (60)
69 1wim_A KIAA0161 protein; ring 98.1 2.6E-07 8.8E-12 75.0 -0.1 52 349-400 5-71 (94)
70 3k1l_B Fancl; UBC, ring, RWD, 98.0 1.3E-06 4.6E-11 86.7 2.1 47 348-394 307-372 (381)
71 3vk6_A E3 ubiquitin-protein li 97.6 3E-05 1E-09 63.8 3.3 45 351-395 3-49 (101)
72 3nw0_A Non-structural maintena 96.9 0.00078 2.7E-08 63.9 4.9 46 349-394 180-228 (238)
73 2ko5_A Ring finger protein Z; 94.6 0.013 4.6E-07 47.5 2.0 45 350-396 29-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 93.6 0.029 9.9E-07 45.2 2.2 31 349-379 3-36 (101)
75 3m62_A Ubiquitin conjugation f 93.4 0.14 4.7E-06 57.1 7.9 51 348-398 890-941 (968)
76 2lri_C Autoimmune regulator; Z 86.0 0.49 1.7E-05 35.7 3.0 48 346-393 9-60 (66)
77 1wil_A KIAA1045 protein; ring 80.8 1.2 4E-05 35.4 3.2 32 347-379 13-47 (89)
78 2cs3_A Protein C14ORF4, MY039 71.6 3.3 0.00011 32.6 3.5 35 348-382 14-52 (93)
79 1mm2_A MI2-beta; PHD, zinc fin 70.5 1.4 4.8E-05 32.4 1.1 48 346-393 6-57 (61)
80 3o36_A Transcription intermedi 67.4 2.3 8E-05 37.8 2.1 47 348-394 3-53 (184)
81 3u5n_A E3 ubiquitin-protein li 66.5 1.3 4.5E-05 40.4 0.2 49 346-394 4-56 (207)
82 2l5u_A Chromodomain-helicase-D 61.6 2.8 9.6E-05 30.8 1.2 42 347-391 9-57 (61)
83 3i2d_A E3 SUMO-protein ligase 58.4 4.8 0.00017 40.2 2.7 49 349-398 249-303 (371)
84 1xwh_A Autoimmune regulator; P 57.7 1.5 5E-05 32.8 -0.9 47 347-393 6-56 (66)
85 2ro1_A Transcription intermedi 55.5 3.7 0.00013 37.0 1.2 45 349-393 2-50 (189)
86 4fo9_A E3 SUMO-protein ligase 54.9 5.9 0.0002 39.4 2.6 48 350-398 216-269 (360)
87 2k16_A Transcription initiatio 52.2 3 0.0001 31.6 0.0 48 348-395 17-71 (75)
88 1z60_A TFIIH basal transcripti 51.3 8.1 0.00028 28.5 2.2 40 350-389 16-58 (59)
89 1fp0_A KAP-1 corepressor; PHD 49.8 5.9 0.0002 31.6 1.4 44 346-392 22-72 (88)
90 2yql_A PHD finger protein 21A; 49.8 1.4 4.8E-05 31.7 -2.1 45 347-391 7-55 (56)
91 1f62_A Transcription factor WS 47.9 7.4 0.00025 27.1 1.5 41 351-391 2-49 (51)
92 2lbm_A Transcriptional regulat 46.9 13 0.00044 32.2 3.2 46 346-391 60-116 (142)
93 3t7l_A Zinc finger FYVE domain 46.7 8.4 0.00029 30.4 1.9 47 347-393 18-74 (90)
94 2l43_A N-teminal domain from h 46.3 4.7 0.00016 31.9 0.3 52 347-398 23-81 (88)
95 1wev_A Riken cDNA 1110020M19; 46.1 4.3 0.00015 32.1 0.0 49 346-394 13-74 (88)
96 2puy_A PHD finger protein 21A; 45.0 1.7 5.8E-05 31.7 -2.4 46 348-393 4-53 (60)
97 3mpx_A FYVE, rhogef and PH dom 44.7 4.6 0.00016 40.2 0.0 46 348-393 374-430 (434)
98 3zyq_A Hepatocyte growth facto 44.4 15 0.00052 33.8 3.5 45 349-393 164-220 (226)
99 1y02_A CARP2, FYVE-ring finger 44.1 2 7E-05 36.2 -2.3 45 348-392 18-66 (120)
100 2co8_A NEDD9 interacting prote 43.1 23 0.00078 26.8 3.8 44 347-398 13-57 (82)
101 1joc_A EEA1, early endosomal a 43.0 23 0.00078 29.7 4.1 31 349-379 69-103 (125)
102 1vfy_A Phosphatidylinositol-3- 42.4 11 0.00037 28.5 1.8 29 350-378 12-44 (73)
103 1m3v_A FLIN4, fusion of the LI 42.0 14 0.00049 30.2 2.7 49 350-398 33-84 (122)
104 1z2q_A LM5-1; membrane protein 41.5 10 0.00034 29.5 1.5 32 348-379 20-55 (84)
105 1wig_A KIAA1808 protein; LIM d 41.2 21 0.00073 26.3 3.3 37 350-394 6-42 (73)
106 1wen_A Inhibitor of growth fam 39.1 25 0.00086 26.5 3.4 42 348-393 15-66 (71)
107 1zbd_B Rabphilin-3A; G protein 37.8 57 0.002 27.6 5.9 30 348-377 54-88 (134)
108 2zet_C Melanophilin; complex, 37.7 34 0.0012 29.7 4.5 43 348-391 67-116 (153)
109 2yw8_A RUN and FYVE domain-con 37.3 12 0.00041 28.9 1.3 31 349-379 19-53 (82)
110 2d8v_A Zinc finger FYVE domain 36.8 13 0.00044 28.0 1.4 32 348-380 7-39 (67)
111 2o35_A Hypothetical protein DU 36.3 12 0.00042 30.5 1.2 13 370-382 42-54 (105)
112 3fyb_A Protein of unknown func 36.0 12 0.00042 30.4 1.2 12 370-381 41-52 (104)
113 2ysm_A Myeloid/lymphoid or mix 35.8 9.9 0.00034 30.9 0.7 35 347-381 5-42 (111)
114 3lqh_A Histone-lysine N-methyl 34.7 14 0.00049 33.1 1.6 45 349-393 2-64 (183)
115 2d8z_A Four and A half LIM dom 34.6 33 0.0011 24.7 3.4 39 350-396 6-44 (70)
116 2e6r_A Jumonji/ARID domain-con 34.3 6.2 0.00021 31.4 -0.8 46 347-392 14-66 (92)
117 1wep_A PHF8; structural genomi 34.3 21 0.00071 27.2 2.3 57 349-406 12-77 (79)
118 2cor_A Pinch protein; LIM doma 33.4 31 0.0011 25.8 3.2 41 349-397 15-55 (79)
119 1dvp_A HRS, hepatocyte growth 33.4 12 0.00042 34.0 1.0 31 349-379 161-195 (220)
120 2dar_A PDZ and LIM domain prot 32.9 27 0.00092 26.8 2.8 42 348-397 24-65 (90)
121 1x4u_A Zinc finger, FYVE domai 32.3 15 0.00051 28.5 1.2 30 349-378 14-47 (84)
122 1wyh_A SLIM 2, skeletal muscle 31.6 41 0.0014 24.3 3.5 41 349-397 5-47 (72)
123 1v6g_A Actin binding LIM prote 31.5 29 0.00099 25.9 2.7 41 349-397 15-55 (81)
124 2d8x_A Protein pinch; LIM doma 31.4 26 0.0009 25.3 2.4 40 350-397 6-45 (70)
125 1wd2_A Ariadne-1 protein homol 31.3 9.8 0.00033 27.9 -0.1 33 350-382 7-47 (60)
126 1x64_A Alpha-actinin-2 associa 31.1 43 0.0015 25.5 3.7 41 349-397 25-65 (89)
127 3ql9_A Transcriptional regulat 30.9 31 0.0011 29.2 3.0 47 346-392 54-111 (129)
128 2dlo_A Thyroid receptor-intera 30.3 35 0.0012 25.4 2.9 40 349-396 15-54 (81)
129 1weu_A Inhibitor of growth fam 30.0 33 0.0011 27.3 2.8 40 350-393 37-86 (91)
130 1wfk_A Zinc finger, FYVE domai 29.8 16 0.00056 28.7 1.0 46 349-394 9-65 (88)
131 1x6a_A LIMK-2, LIM domain kina 29.2 49 0.0017 24.5 3.7 38 350-395 16-53 (81)
132 1nyp_A Pinch protein; LIM doma 29.1 38 0.0013 24.0 2.9 40 350-397 6-45 (66)
133 1x62_A C-terminal LIM domain p 28.7 28 0.00095 26.0 2.1 39 349-395 15-53 (79)
134 2gmg_A Hypothetical protein PF 27.8 14 0.00048 30.4 0.3 26 362-392 68-93 (105)
135 1weo_A Cellulose synthase, cat 27.5 72 0.0025 25.4 4.3 47 348-394 15-69 (93)
136 2pv0_B DNA (cytosine-5)-methyl 27.1 40 0.0014 33.8 3.5 45 348-392 92-148 (386)
137 1x4l_A Skeletal muscle LIM-pro 27.0 58 0.002 23.5 3.6 40 349-396 5-48 (72)
138 2jmo_A Parkin; IBR, E3 ligase, 26.7 8.5 0.00029 29.7 -1.2 20 366-387 55-74 (80)
139 1x4k_A Skeletal muscle LIM-pro 26.6 39 0.0013 24.4 2.6 39 350-396 6-46 (72)
140 2xjy_A Rhombotin-2; oncoprotei 26.4 40 0.0014 27.4 2.9 47 350-396 30-79 (131)
141 3a1b_A DNA (cytosine-5)-methyl 26.4 31 0.0011 30.3 2.3 44 349-392 79-134 (159)
142 2lv9_A Histone-lysine N-methyl 26.1 19 0.00066 28.8 0.8 41 350-391 29-75 (98)
143 4gne_A Histone-lysine N-methyl 25.9 29 0.001 28.4 1.9 43 346-393 12-63 (107)
144 2cur_A Skeletal muscle LIM-pro 25.5 39 0.0013 24.3 2.4 37 350-394 6-42 (69)
145 2cu8_A Cysteine-rich protein 2 25.3 48 0.0016 24.3 2.9 40 349-396 9-49 (76)
146 1we9_A PHD finger family prote 25.3 9.4 0.00032 27.8 -1.1 45 348-392 5-58 (64)
147 1x68_A FHL5 protein; four-and- 24.3 53 0.0018 24.1 3.0 38 350-395 6-47 (76)
148 1x63_A Skeletal muscle LIM-pro 24.3 68 0.0023 23.7 3.7 41 349-397 15-57 (82)
149 1rut_X Flinc4, fusion protein 24.3 26 0.00089 30.9 1.4 47 350-396 33-82 (188)
150 3mjh_B Early endosome antigen 24.0 7.3 0.00025 25.6 -1.7 14 349-362 5-18 (34)
151 3v43_A Histone acetyltransfera 23.6 21 0.00072 29.1 0.6 41 351-391 63-111 (112)
152 2l3k_A Rhombotin-2, linker, LI 23.5 56 0.0019 26.5 3.3 46 350-397 37-84 (123)
153 2fiy_A Protein FDHE homolog; F 22.9 17 0.00058 35.3 -0.1 46 347-392 180-231 (309)
154 2jne_A Hypothetical protein YF 21.6 8.1 0.00028 31.4 -2.2 42 348-394 31-72 (101)
155 1x3h_A Leupaxin; paxillin fami 21.1 55 0.0019 24.1 2.5 40 350-397 16-55 (80)
No 1
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.35 E-value=5.9e-13 Score=104.49 Aligned_cols=62 Identities=31% Similarity=0.725 Sum_probs=53.6
Q ss_pred hhcCCcCccccccccCC---EeecCCCCcchhhHHHHhccCCCCCCCcccccCCCccccCCCCcc
Q 015126 346 NAAGDLCAICQEKMHAP---ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLRSFGDGSTS 407 (413)
Q Consensus 346 ~~~~~~C~ICle~~~~p---v~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~~~~~~Dgsts 407 (413)
...+..|+||++.+..+ +.++|+|.||..|+.+|+..+.+||+||+.+...++..-..|.|.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 76 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNPPGLTG 76 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCCSSCTT
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCCCCCCC
Confidence 44567999999999765 457999999999999999999999999999998888777777764
No 2
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.7e-12 Score=100.61 Aligned_cols=54 Identities=26% Similarity=0.649 Sum_probs=47.7
Q ss_pred hcCCcCccccccccCCEee-cCCCCcchhhHHHHhccCCCCCCCcccccCCCccc
Q 015126 347 AAGDLCAICQEKMHAPILL-QCKHLFCEDCVSEWLERERTCPLCRALVKPADLRS 400 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L-~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~~~~ 400 (413)
.++..|+||++.+.+|+.+ +|+|.||..|+..|+....+||+||+.+...+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 4456899999999999987 99999999999999998899999999998766443
No 3
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=7.6e-13 Score=102.34 Aligned_cols=52 Identities=35% Similarity=0.636 Sum_probs=46.8
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccCCCc
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADL 398 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~~ 398 (413)
..+..|+||++.+.+++.++|+|.||..|+..|+....+||+||+.+...++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 4457899999999999999999999999999999988999999999875543
No 4
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.27 E-value=1.1e-12 Score=100.78 Aligned_cols=53 Identities=26% Similarity=0.721 Sum_probs=47.2
Q ss_pred hcCCcCccccccccCC-------EeecCCCCcchhhHHHHhccCCCCCCCcccccCCCcc
Q 015126 347 AAGDLCAICQEKMHAP-------ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 399 (413)
Q Consensus 347 ~~~~~C~ICle~~~~p-------v~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~~~ 399 (413)
+++..|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||+.+...++.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhee
Confidence 3456899999999887 8899999999999999999999999999999876654
No 5
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.2e-12 Score=98.23 Aligned_cols=50 Identities=28% Similarity=0.759 Sum_probs=44.6
Q ss_pred hhcCCcCccccccccCC-------EeecCCCCcchhhHHHHhccCCCCCCCcccccC
Q 015126 346 NAAGDLCAICQEKMHAP-------ILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 395 (413)
Q Consensus 346 ~~~~~~C~ICle~~~~p-------v~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~ 395 (413)
...+..|+||++.+.++ +.++|||.||..|+..|+..+.+||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34567899999999877 789999999999999999998999999998864
No 6
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.8e-12 Score=97.78 Aligned_cols=52 Identities=29% Similarity=0.783 Sum_probs=46.0
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhc---cCCCCCCCcccccCCCc
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLE---RERTCPLCRALVKPADL 398 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~---~~~tCPlCR~~i~~~~~ 398 (413)
..+..|+||++.+.+++.++|||.||..|+..|+. ....||+||+.+...++
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 45679999999999999999999999999999996 45689999999987654
No 7
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.23 E-value=2.3e-12 Score=96.72 Aligned_cols=52 Identities=27% Similarity=0.712 Sum_probs=46.3
Q ss_pred CCcCccccccccCC-------EeecCCCCcchhhHHHHhccCCCCCCCcccccCCCccc
Q 015126 349 GDLCAICQEKMHAP-------ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLRS 400 (413)
Q Consensus 349 ~~~C~ICle~~~~p-------v~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~~~~ 400 (413)
+..|+||++.+.++ +.++|||.||.+|+.+|+.++.+||+||+.+...++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceee
Confidence 46899999999876 78999999999999999999999999999998766543
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=2.7e-12 Score=100.15 Aligned_cols=50 Identities=38% Similarity=0.936 Sum_probs=44.4
Q ss_pred hcCCcCccccccccCC---EeecCCCCcchhhHHHHhccCCCCCCCcccccCC
Q 015126 347 AAGDLCAICQEKMHAP---ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 396 (413)
Q Consensus 347 ~~~~~C~ICle~~~~p---v~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~ 396 (413)
..+..|+||++.+..+ +.++|+|.||..|+..|+..+.+||+||+.+.+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4557899999999877 6789999999999999999999999999988653
No 9
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.22 E-value=5e-12 Score=92.46 Aligned_cols=47 Identities=40% Similarity=0.904 Sum_probs=41.7
Q ss_pred cCCcCccccccccC---CEeec-CCCCcchhhHHHHhccCCCCCCCccccc
Q 015126 348 AGDLCAICQEKMHA---PILLQ-CKHLFCEDCVSEWLERERTCPLCRALVK 394 (413)
Q Consensus 348 ~~~~C~ICle~~~~---pv~L~-CgHiFC~~CI~~Wl~~~~tCPlCR~~i~ 394 (413)
++..|+||++.+.+ ++.++ |+|.||..|+.+|++++.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45689999999987 56776 9999999999999999999999998763
No 10
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=6.4e-12 Score=95.60 Aligned_cols=52 Identities=23% Similarity=0.616 Sum_probs=45.5
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhc-cCCCCCCCcccccCCCc
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLE-RERTCPLCRALVKPADL 398 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~-~~~tCPlCR~~i~~~~~ 398 (413)
.++..|+||++.+.+|+.++|||.||..|+..|+. ...+||+||+.+..+++
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 34568999999999999999999999999999994 56789999999876653
No 11
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=6.9e-12 Score=96.06 Aligned_cols=50 Identities=32% Similarity=0.834 Sum_probs=43.2
Q ss_pred hhcCCcCccccccccC---CEeecCCCCcchhhHHHHhccCCCCCCCcccccC
Q 015126 346 NAAGDLCAICQEKMHA---PILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 395 (413)
Q Consensus 346 ~~~~~~C~ICle~~~~---pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~ 395 (413)
...+..|+||++.+.. ++.++|+|.||..|+..|+....+||+||+.+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3456789999998853 4679999999999999999998999999999864
No 12
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.20 E-value=1e-11 Score=96.92 Aligned_cols=51 Identities=27% Similarity=0.740 Sum_probs=44.3
Q ss_pred hcCCcCccccccccCCEeec-CCCCcchhhHHHHhccC--CCCCCCcccccCCC
Q 015126 347 AAGDLCAICQEKMHAPILLQ-CKHLFCEDCVSEWLERE--RTCPLCRALVKPAD 397 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~-CgHiFC~~CI~~Wl~~~--~tCPlCR~~i~~~~ 397 (413)
.++..|+||++.+.+|+.++ |||.||..|+..|+... .+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 34568999999999999999 99999999999999765 68999999865443
No 13
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.19 E-value=7.3e-12 Score=91.45 Aligned_cols=47 Identities=34% Similarity=0.772 Sum_probs=41.9
Q ss_pred cCCcCccccccccC----CEeecCCCCcchhhHHHHhccCCCCCCCccccc
Q 015126 348 AGDLCAICQEKMHA----PILLQCKHLFCEDCVSEWLERERTCPLCRALVK 394 (413)
Q Consensus 348 ~~~~C~ICle~~~~----pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~ 394 (413)
.+..|+||++.+.+ ++.++|+|.||..|+.+|+....+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45689999999865 678999999999999999998899999998764
No 14
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.19 E-value=6.1e-12 Score=109.75 Aligned_cols=49 Identities=37% Similarity=0.945 Sum_probs=45.0
Q ss_pred cCCcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccCC
Q 015126 348 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 396 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~ 396 (413)
++..|+||++.+.+|+.++|||.||..|+..|+..+.+||+||+.+...
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 4568999999999999999999999999999999999999999998643
No 15
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.19 E-value=1.3e-11 Score=97.40 Aligned_cols=53 Identities=30% Similarity=0.760 Sum_probs=46.8
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhcc------CCCCCCCcccccCCCcc
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER------ERTCPLCRALVKPADLR 399 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~------~~tCPlCR~~i~~~~~~ 399 (413)
..+..|+||++.+.+|+.++|+|.||..|+..|+.. ...||.||..+...++.
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC
Confidence 446799999999999999999999999999999987 66899999998766543
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=5e-12 Score=97.10 Aligned_cols=50 Identities=34% Similarity=1.007 Sum_probs=45.2
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccCCC
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 397 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~ 397 (413)
.++..|+||++.+.+ +.++|+|.||..|+..|+.+..+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 346789999999999 99999999999999999999999999999987553
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.18 E-value=8.4e-12 Score=95.18 Aligned_cols=48 Identities=35% Similarity=0.937 Sum_probs=43.7
Q ss_pred cCCcCccccccccCC-EeecCCCCcchhhHHHHhccCCCCCCCcccccC
Q 015126 348 AGDLCAICQEKMHAP-ILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 395 (413)
Q Consensus 348 ~~~~C~ICle~~~~p-v~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~ 395 (413)
.+..|+||++.+.++ +.++|||.||..|+..|+.+..+||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 456899999999986 789999999999999999988999999998863
No 18
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.18 E-value=9.9e-12 Score=97.43 Aligned_cols=53 Identities=23% Similarity=0.501 Sum_probs=46.9
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhcc-CCCCCCCcccccCCCcc
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER-ERTCPLCRALVKPADLR 399 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~-~~tCPlCR~~i~~~~~~ 399 (413)
.++..|+||++.+.+|+.++|||.||..|+..|+.. ..+||+||+.+...++.
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~ 59 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT 59 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE
T ss_pred cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCc
Confidence 345789999999999999999999999999999987 77899999998765543
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=9.7e-12 Score=98.40 Aligned_cols=48 Identities=27% Similarity=0.751 Sum_probs=44.5
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCccccc
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 394 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~ 394 (413)
.....|+||++.+.+|+.++|||.||..|+..|+....+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345689999999999999999999999999999998899999999985
No 20
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.17 E-value=7.8e-12 Score=101.57 Aligned_cols=49 Identities=37% Similarity=0.883 Sum_probs=43.4
Q ss_pred hcCCcCccccccccC---CEeecCCCCcchhhHHHHhccCCCCCCCcccccC
Q 015126 347 AAGDLCAICQEKMHA---PILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 395 (413)
Q Consensus 347 ~~~~~C~ICle~~~~---pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~ 395 (413)
..+..|+||++.+.. ++.++|+|.||..|+..|+..+.+||+||+.+.+
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 345689999999887 6779999999999999999999999999998864
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1e-11 Score=99.08 Aligned_cols=57 Identities=30% Similarity=0.734 Sum_probs=48.3
Q ss_pred hcCCcCccccccccC----CEeecCCCCcchhhHHHHhccC---CCCCCCcccccCCCccccCC
Q 015126 347 AAGDLCAICQEKMHA----PILLQCKHLFCEDCVSEWLERE---RTCPLCRALVKPADLRSFGD 403 (413)
Q Consensus 347 ~~~~~C~ICle~~~~----pv~L~CgHiFC~~CI~~Wl~~~---~tCPlCR~~i~~~~~~~~~D 403 (413)
.++..|+||++.+.+ ++.++|||.||..|+..|+... .+||+||+.+...++....+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~ 76 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTD 76 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEE
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHH
Confidence 445689999999998 8999999999999999999875 79999999987766554433
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=97.05 Aligned_cols=52 Identities=33% Similarity=0.876 Sum_probs=46.4
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhcc------CCCCCCCcccccCCCc
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER------ERTCPLCRALVKPADL 398 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~------~~tCPlCR~~i~~~~~ 398 (413)
..+..|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+...++
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 446799999999999999999999999999999976 7799999999986554
No 23
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.17 E-value=1.3e-11 Score=103.57 Aligned_cols=61 Identities=23% Similarity=0.508 Sum_probs=47.4
Q ss_pred cCCcCccccccccCCE------------------eecCCCCcchhhHHHHh-----ccCCCCCCCcccccCCCccccCCC
Q 015126 348 AGDLCAICQEKMHAPI------------------LLQCKHLFCEDCVSEWL-----ERERTCPLCRALVKPADLRSFGDG 404 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv------------------~L~CgHiFC~~CI~~Wl-----~~~~tCPlCR~~i~~~~~~~~~Dg 404 (413)
.++.|+||++.+..+. .++|+|.||..||..|+ ....+||+||+.+.... -.-.+|
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~-g~qp~g 102 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT-GTQPWG 102 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS-SSCTTS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC-CCCCCC
Confidence 3468999999996643 78999999999999999 45679999999987553 334566
Q ss_pred Ccccc
Q 015126 405 STSLL 409 (413)
Q Consensus 405 sts~~ 409 (413)
..+.+
T Consensus 103 ~m~~~ 107 (114)
T 1v87_A 103 KMEVF 107 (114)
T ss_dssp SCCCS
T ss_pred eEEEE
Confidence 65543
No 24
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=8e-12 Score=99.48 Aligned_cols=50 Identities=30% Similarity=0.757 Sum_probs=41.8
Q ss_pred hcCCcCccccccccC--------------CEee-cCCCCcchhhHHHHhccCCCCCCCcccccCC
Q 015126 347 AAGDLCAICQEKMHA--------------PILL-QCKHLFCEDCVSEWLERERTCPLCRALVKPA 396 (413)
Q Consensus 347 ~~~~~C~ICle~~~~--------------pv~L-~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~ 396 (413)
.+++.|+||++.+.+ .+.+ +|+|.||.+||.+|+.++.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 356789999999865 3444 5999999999999999999999999987543
No 25
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.5e-11 Score=95.35 Aligned_cols=50 Identities=36% Similarity=0.848 Sum_probs=43.3
Q ss_pred hcCCcCccccccccCCE---eecCCCCcchhhHHHHhccCCCCCCCcccccCC
Q 015126 347 AAGDLCAICQEKMHAPI---LLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 396 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv---~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~ 396 (413)
..+..|+||++.+..+. .++|+|.||..|+.+|+..+.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 45678999999998664 459999999999999999889999999998643
No 26
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.15 E-value=6.5e-12 Score=98.36 Aligned_cols=52 Identities=27% Similarity=0.678 Sum_probs=45.9
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhcc-------CCCCCCCcccccCCCc
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER-------ERTCPLCRALVKPADL 398 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~-------~~tCPlCR~~i~~~~~ 398 (413)
.++..|+||++.+.+|+.++|||.||..|+..|+.. ...||+||..+...++
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 346789999999999999999999999999999976 5689999999876543
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.14 E-value=1.1e-11 Score=102.36 Aligned_cols=53 Identities=36% Similarity=0.775 Sum_probs=46.7
Q ss_pred hcCCcCccccccccCCEe-ecCCCCcchhhHHHHhccC-CCCCCCcccccCCCcc
Q 015126 347 AAGDLCAICQEKMHAPIL-LQCKHLFCEDCVSEWLERE-RTCPLCRALVKPADLR 399 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~-L~CgHiFC~~CI~~Wl~~~-~tCPlCR~~i~~~~~~ 399 (413)
.++..|+||++.+.+|+. ++|||.||..||..|+... .+||+||..+...++.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH
Confidence 345689999999999999 9999999999999999887 6999999998765543
No 28
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.11 E-value=3e-11 Score=97.63 Aligned_cols=47 Identities=28% Similarity=0.776 Sum_probs=42.3
Q ss_pred hcCCcCccccccccCCEeec-CCCCcchhhHHHHhccC--CCCCCCcccc
Q 015126 347 AAGDLCAICQEKMHAPILLQ-CKHLFCEDCVSEWLERE--RTCPLCRALV 393 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~-CgHiFC~~CI~~Wl~~~--~tCPlCR~~i 393 (413)
.++..|+||++.+.+|+.++ |||.||..|+..|+... ..||+||..+
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 45578999999999999999 99999999999999653 5899999987
No 29
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.11 E-value=2.2e-11 Score=99.90 Aligned_cols=51 Identities=29% Similarity=0.733 Sum_probs=45.7
Q ss_pred hcCCcCccccccccCCEee-cCCCCcchhhHHHHhccCCCCCCCcccccCCC
Q 015126 347 AAGDLCAICQEKMHAPILL-QCKHLFCEDCVSEWLERERTCPLCRALVKPAD 397 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L-~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~ 397 (413)
.++..|+||++.+.+|+.+ +|||.||..|+..|+....+||.||..+...+
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 3457899999999999888 89999999999999998899999999987543
No 30
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.08 E-value=4.6e-11 Score=102.03 Aligned_cols=49 Identities=31% Similarity=0.691 Sum_probs=43.9
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhccCC-CCCCCcccccC
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERER-TCPLCRALVKP 395 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~-tCPlCR~~i~~ 395 (413)
.++..|+||++.+.+|+.++|||.||..|+..|+.... .||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34568999999999999999999999999999997544 89999999875
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=7.9e-11 Score=89.24 Aligned_cols=51 Identities=29% Similarity=0.768 Sum_probs=43.3
Q ss_pred CCcCccccc-cccCC----EeecCCCCcchhhHHHHhcc-CCCCCCCcccccCCCcc
Q 015126 349 GDLCAICQE-KMHAP----ILLQCKHLFCEDCVSEWLER-ERTCPLCRALVKPADLR 399 (413)
Q Consensus 349 ~~~C~ICle-~~~~p----v~L~CgHiFC~~CI~~Wl~~-~~tCPlCR~~i~~~~~~ 399 (413)
+..|+||++ .+.++ +.++|||.||..|+.+|+.+ ...||+||+.+...+++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 457999999 78887 46899999999999999765 46899999999877664
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.1e-11 Score=88.53 Aligned_cols=43 Identities=33% Similarity=0.878 Sum_probs=38.9
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhc---cCCCCCCC
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLE---RERTCPLC 389 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~---~~~tCPlC 389 (413)
.++..|+||++.+.+|+.++|||.||..|+..|++ ...+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45679999999999999999999999999999997 45689998
No 33
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.06 E-value=8.1e-11 Score=98.80 Aligned_cols=47 Identities=32% Similarity=0.675 Sum_probs=41.5
Q ss_pred cCCcCccccccccCC------------------EeecCCCCcchhhHHHHhccCCCCCCCccccc
Q 015126 348 AGDLCAICQEKMHAP------------------ILLQCKHLFCEDCVSEWLERERTCPLCRALVK 394 (413)
Q Consensus 348 ~~~~C~ICle~~~~p------------------v~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~ 394 (413)
.++.|+||++.+..+ +.++|+|.||..||..|+.++.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 467999999998765 45899999999999999999999999999863
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=8.8e-11 Score=86.46 Aligned_cols=43 Identities=35% Similarity=1.148 Sum_probs=38.3
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHh---ccCCCCCCC
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWL---ERERTCPLC 389 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl---~~~~tCPlC 389 (413)
.++..|+||++.+.+|+.++|+|.||..|+..|+ ....+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999999999999999999999999995 456789998
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=8.3e-11 Score=98.04 Aligned_cols=51 Identities=31% Similarity=0.827 Sum_probs=45.1
Q ss_pred CCcCccccccccCCEeecCCCCcchhhHHHHhccCC---CCCCCcccccCCCcc
Q 015126 349 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERER---TCPLCRALVKPADLR 399 (413)
Q Consensus 349 ~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~---tCPlCR~~i~~~~~~ 399 (413)
...|+||++.+.+|+.++|||.||..|+..|+.... .||.||..+...++.
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 458999999999999999999999999999998653 899999998866543
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.05 E-value=8.8e-11 Score=97.92 Aligned_cols=50 Identities=26% Similarity=0.777 Sum_probs=45.7
Q ss_pred hcCCcCccccccccCCEee-cCCCCcchhhHHHHhccCCCCCCCcccccCC
Q 015126 347 AAGDLCAICQEKMHAPILL-QCKHLFCEDCVSEWLERERTCPLCRALVKPA 396 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L-~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~ 396 (413)
.++..|+||++.+.+|+.+ +|||.||..|+..|+.....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4567899999999999997 9999999999999999889999999998754
No 37
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.01 E-value=1.2e-10 Score=93.57 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=46.2
Q ss_pred cCCcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccCCCc
Q 015126 348 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADL 398 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~~ 398 (413)
....|+||++.|.+|+.++|||.||..||..|+....+||.||..+...++
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l 63 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESML 63 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhc
Confidence 457899999999999999999999999999999988899999998865543
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.01 E-value=1.2e-10 Score=99.10 Aligned_cols=53 Identities=26% Similarity=0.716 Sum_probs=47.7
Q ss_pred cCCcCccccccccCC-------EeecCCCCcchhhHHHHhccCCCCCCCcccccCCCccc
Q 015126 348 AGDLCAICQEKMHAP-------ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLRS 400 (413)
Q Consensus 348 ~~~~C~ICle~~~~p-------v~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~~~~ 400 (413)
++..|+||++.+.++ +.++|||.||.+|+.+|+..+.+||+||+.+...++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccc
Confidence 456899999999988 89999999999999999999999999999998776644
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.00 E-value=1.7e-10 Score=95.71 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=47.1
Q ss_pred cCCcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccCCCcc
Q 015126 348 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 399 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~~~ 399 (413)
+...|+||++.|.+|+.++|||.||..||..|+....+||.||..+...++.
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~ 79 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLE 79 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSE
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhce
Confidence 4569999999999999999999999999999999888999999998766543
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.99 E-value=1.8e-10 Score=102.18 Aligned_cols=50 Identities=28% Similarity=0.709 Sum_probs=44.9
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhccCC-CCCCCcccccCC
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERER-TCPLCRALVKPA 396 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~-tCPlCR~~i~~~ 396 (413)
.+...|+||++.+.+|+.++|||.||..|+..|+.... .||+||..+...
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 34578999999999999999999999999999998754 899999998765
No 41
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.98 E-value=2.5e-10 Score=94.35 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=47.2
Q ss_pred cCCcCccccccccCCEeecCC-CCcchhhHHHHhccCCCCCCCcccccCCCcc
Q 015126 348 AGDLCAICQEKMHAPILLQCK-HLFCEDCVSEWLERERTCPLCRALVKPADLR 399 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~Cg-HiFC~~CI~~Wl~~~~tCPlCR~~i~~~~~~ 399 (413)
++..|+||++.|.+|+.++|| |.||..||..|+....+||+||..+...++.
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~ 73 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIR 73 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSE
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhce
Confidence 457999999999999999999 9999999999999888999999998766553
No 42
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.96 E-value=1.8e-10 Score=97.17 Aligned_cols=52 Identities=37% Similarity=0.793 Sum_probs=46.2
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhcc-CCCCCCCcccccCCCc
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER-ERTCPLCRALVKPADL 398 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~-~~tCPlCR~~i~~~~~ 398 (413)
.++..|+||++.+.+|+.++|||.||..|+..|+.. ..+||+||..+...++
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 345789999999999999999999999999999986 6799999999876553
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.96 E-value=8.1e-11 Score=99.11 Aligned_cols=47 Identities=34% Similarity=0.855 Sum_probs=42.8
Q ss_pred cCCcCccccccccCCEeecCCCCcchhhHHHHhcc-CCCCCCCccccc
Q 015126 348 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER-ERTCPLCRALVK 394 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~-~~tCPlCR~~i~ 394 (413)
++..|+||++.+.+|+.++|||.||..|+..|+.. ...||+||..+.
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 45689999999999999999999999999999976 668999999875
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.95 E-value=1.7e-10 Score=97.86 Aligned_cols=51 Identities=20% Similarity=0.578 Sum_probs=45.1
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhccCC-CCCCCcccccCCC
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERER-TCPLCRALVKPAD 397 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~-tCPlCR~~i~~~~ 397 (413)
..+..|+||++.+.+|+.++|||.||..|+..|+.... +||+||..+...+
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 34568999999999999999999999999999998755 9999999987544
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.93 E-value=2.2e-10 Score=102.51 Aligned_cols=48 Identities=29% Similarity=0.806 Sum_probs=43.0
Q ss_pred cCCcCccccccccCCEee-cCCCCcchhhHHHHhcc-CCCCCCCcccccC
Q 015126 348 AGDLCAICQEKMHAPILL-QCKHLFCEDCVSEWLER-ERTCPLCRALVKP 395 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L-~CgHiFC~~CI~~Wl~~-~~tCPlCR~~i~~ 395 (413)
.+..|+||++.+.+|+.+ +|||.||..|+..|+.. ...||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 345899999999999987 99999999999999987 7789999998853
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.90 E-value=2.3e-10 Score=97.45 Aligned_cols=54 Identities=26% Similarity=0.710 Sum_probs=47.3
Q ss_pred hhcCCcCccccccccCC-------EeecCCCCcchhhHHHHhccCCCCCCCcccccCCCcc
Q 015126 346 NAAGDLCAICQEKMHAP-------ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 399 (413)
Q Consensus 346 ~~~~~~C~ICle~~~~p-------v~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~~~ 399 (413)
..++..|+||++.+.++ +.++|||.||..|+.+|+...++||+||+.+..+++.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 129 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcce
Confidence 34567899999999876 7899999999999999999999999999999866543
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.90 E-value=5.5e-10 Score=85.02 Aligned_cols=47 Identities=30% Similarity=0.737 Sum_probs=42.8
Q ss_pred cCCcCccccccccCCEee--cCCCC-cchhhHHHHhccCCCCCCCccccc
Q 015126 348 AGDLCAICQEKMHAPILL--QCKHL-FCEDCVSEWLERERTCPLCRALVK 394 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L--~CgHi-FC~~CI~~Wl~~~~tCPlCR~~i~ 394 (413)
++..|.||++...+++.+ ||||. ||.+|+..|......||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999999999877 99999 899999999988889999999885
No 48
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.89 E-value=5.5e-10 Score=84.74 Aligned_cols=48 Identities=19% Similarity=0.603 Sum_probs=43.1
Q ss_pred hcCCcCccccccccCCEee--cCCCC-cchhhHHHHhccCCCCCCCccccc
Q 015126 347 AAGDLCAICQEKMHAPILL--QCKHL-FCEDCVSEWLERERTCPLCRALVK 394 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L--~CgHi-FC~~CI~~Wl~~~~tCPlCR~~i~ 394 (413)
+.+..|.||++...+++.+ ||||. ||.+|...|..+...||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4456899999999998877 99998 999999999988889999999885
No 49
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=5.4e-10 Score=94.56 Aligned_cols=50 Identities=32% Similarity=0.789 Sum_probs=44.3
Q ss_pred hcCCcCccccccccCCEee-cCCCCcchhhHHHHhccCCCCCCCcccccCCCc
Q 015126 347 AAGDLCAICQEKMHAPILL-QCKHLFCEDCVSEWLERERTCPLCRALVKPADL 398 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L-~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~~ 398 (413)
.....|+||++.+.+|+.+ +|||.||..|+..|+. ..||.||..+...++
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~ 70 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDL 70 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSC
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccc
Confidence 3467899999999999999 9999999999999988 789999999865443
No 50
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.88 E-value=1.9e-10 Score=98.20 Aligned_cols=47 Identities=32% Similarity=0.675 Sum_probs=1.0
Q ss_pred cCCcCccccccccCC------------------EeecCCCCcchhhHHHHhccCCCCCCCccccc
Q 015126 348 AGDLCAICQEKMHAP------------------ILLQCKHLFCEDCVSEWLERERTCPLCRALVK 394 (413)
Q Consensus 348 ~~~~C~ICle~~~~p------------------v~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~ 394 (413)
.++.|+||++.+.++ +.++|+|.||..||.+|+..+.+||+||+.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 457999999998753 13589999999999999999999999999864
No 51
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.88 E-value=1.8e-09 Score=103.04 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=44.7
Q ss_pred cCCcCccccccccCCEeecCCCCcchhhHHHHhccC-CCCCCCcccccCCCc
Q 015126 348 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE-RTCPLCRALVKPADL 398 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~-~tCPlCR~~i~~~~~ 398 (413)
....|+||++.+.+|+.++|||+||..||..|+... .+||.||.++...++
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l 258 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL 258 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcC
Confidence 456899999999999999999999999999999864 459999999875543
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=5.2e-10 Score=82.74 Aligned_cols=45 Identities=31% Similarity=0.682 Sum_probs=39.7
Q ss_pred cCCcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccC
Q 015126 348 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 395 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~ 395 (413)
+...|+||++.+.+|+.++|||.||..|+..| ...||+||+.+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 45689999999999999999999999999874 5689999998864
No 53
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.4e-09 Score=86.62 Aligned_cols=50 Identities=26% Similarity=0.812 Sum_probs=41.7
Q ss_pred hcCCcCcccccccc--CCEeecCC-----CCcchhhHHHHhccC--CCCCCCcccccCC
Q 015126 347 AAGDLCAICQEKMH--APILLQCK-----HLFCEDCVSEWLERE--RTCPLCRALVKPA 396 (413)
Q Consensus 347 ~~~~~C~ICle~~~--~pv~L~Cg-----HiFC~~CI~~Wl~~~--~tCPlCR~~i~~~ 396 (413)
..++.|.||++++. ++..+||+ |.||.+||.+|+..+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 44678999998874 56778997 999999999999765 4899999998644
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.84 E-value=8e-10 Score=86.31 Aligned_cols=44 Identities=30% Similarity=0.868 Sum_probs=40.1
Q ss_pred hcCCcCccccccccCCEeecCCCC-cchhhHHHHhccCCCCCCCccccc
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHL-FCEDCVSEWLERERTCPLCRALVK 394 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHi-FC~~CI~~Wl~~~~tCPlCR~~i~ 394 (413)
.++..|+||++.+.+++.++|||. ||..|+..| ..||+||+.+.
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 345689999999999999999999 999999988 78999999886
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.82 E-value=1.6e-09 Score=109.69 Aligned_cols=47 Identities=36% Similarity=0.952 Sum_probs=43.5
Q ss_pred CcCccccccccCCEeecCCCCcchhhHHHHhc-cCCCCCCCcccccCC
Q 015126 350 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLE-RERTCPLCRALVKPA 396 (413)
Q Consensus 350 ~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~-~~~tCPlCR~~i~~~ 396 (413)
..|+||++.+.+++.++|||.||..|+..|+. ...+||+||+.+...
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 58999999999999999999999999999998 678999999988644
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.80 E-value=9.7e-10 Score=96.55 Aligned_cols=48 Identities=27% Similarity=0.632 Sum_probs=43.0
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhccCC-CCCCCccccc
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERER-TCPLCRALVK 394 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~-tCPlCR~~i~ 394 (413)
.++..|+||++.+.+|+.++|||.||..||..|+.... +||+||..+.
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 45568999999999999999999999999999998655 8999999764
No 57
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.77 E-value=3.6e-09 Score=83.88 Aligned_cols=52 Identities=19% Similarity=0.431 Sum_probs=41.2
Q ss_pred hcCCcCcccccccc--CCEeec--CCCCcchhhHHHHhcc-CCCCCCCcccccCCCc
Q 015126 347 AAGDLCAICQEKMH--APILLQ--CKHLFCEDCVSEWLER-ERTCPLCRALVKPADL 398 (413)
Q Consensus 347 ~~~~~C~ICle~~~--~pv~L~--CgHiFC~~CI~~Wl~~-~~tCPlCR~~i~~~~~ 398 (413)
+++..|+||++.+. ++..++ |||.||..|+..++.. ...||.||+.+....+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 45568999999885 334444 9999999999998754 5689999999986654
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=1.7e-09 Score=88.30 Aligned_cols=50 Identities=30% Similarity=0.696 Sum_probs=42.3
Q ss_pred cCCcCccccccccCCEeec-CCCCcchhhHHHHhccC------CCCCC--Cccc-ccCCC
Q 015126 348 AGDLCAICQEKMHAPILLQ-CKHLFCEDCVSEWLERE------RTCPL--CRAL-VKPAD 397 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~-CgHiFC~~CI~~Wl~~~------~tCPl--CR~~-i~~~~ 397 (413)
.+..|+||++.|.+|+.++ |||.||..||..|+... .+||. |+.. +...+
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 4568999999999999996 99999999999999753 48999 9866 55444
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=8.2e-09 Score=79.53 Aligned_cols=47 Identities=32% Similarity=0.834 Sum_probs=40.8
Q ss_pred hhhcCCcCccccccccCCEeecCCCC-cchhhHHHHhccCCCCCCCcccccC
Q 015126 345 VNAAGDLCAICQEKMHAPILLQCKHL-FCEDCVSEWLERERTCPLCRALVKP 395 (413)
Q Consensus 345 ~~~~~~~C~ICle~~~~pv~L~CgHi-FC~~CI~~Wl~~~~tCPlCR~~i~~ 395 (413)
...++..|.||++...+++.+||+|. ||..|+.. ...||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 34456799999999999999999999 99999984 4789999999864
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=4.8e-09 Score=81.93 Aligned_cols=44 Identities=30% Similarity=0.846 Sum_probs=38.8
Q ss_pred cCCcCccccccccCCEeecCCCC-cchhhHHHHhccCCCCCCCcccccC
Q 015126 348 AGDLCAICQEKMHAPILLQCKHL-FCEDCVSEWLERERTCPLCRALVKP 395 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~CgHi-FC~~CI~~Wl~~~~tCPlCR~~i~~ 395 (413)
++..|+||++.+.+++.++|||. ||..|+.. ...||+||+.+..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 34589999999999999999999 99999964 3789999999864
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.67 E-value=1.1e-08 Score=93.41 Aligned_cols=51 Identities=20% Similarity=0.179 Sum_probs=44.8
Q ss_pred cCCcCccccccccCCEeecCCCCcchhhHHHHhccC-CCCCCCcccccCCCc
Q 015126 348 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE-RTCPLCRALVKPADL 398 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~-~tCPlCR~~i~~~~~ 398 (413)
....|+||++.|.+|+.++|||.||..||..|+... .+||.||.++...++
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL 156 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhC
Confidence 456899999999999999999999999999999764 479999998875544
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.67 E-value=4.5e-09 Score=94.27 Aligned_cols=51 Identities=20% Similarity=0.588 Sum_probs=44.7
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhccC-CCCCCCcccccCCC
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE-RTCPLCRALVKPAD 397 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~-~tCPlCR~~i~~~~ 397 (413)
.++..|+||++.+.+|+.++|||.||..|+..|+... .+||+||..+...+
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 3456899999999999999999999999999999764 49999999987543
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.64 E-value=6.4e-09 Score=82.44 Aligned_cols=55 Identities=29% Similarity=0.664 Sum_probs=44.3
Q ss_pred cCCcCccccccccCCEeecCCCC-cchhhHHHHhccCCCCCCCcccccCCCccccCCCCcc
Q 015126 348 AGDLCAICQEKMHAPILLQCKHL-FCEDCVSEWLERERTCPLCRALVKPADLRSFGDGSTS 407 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~CgHi-FC~~CI~~Wl~~~~tCPlCR~~i~~~~~~~~~Dgsts 407 (413)
++..|+||++...+++.+||||. ||..|+..| ..||+||..+.. .++.|....++
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~-~~~i~~p~~~~ 72 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH-VQHVYLPTHTS 72 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE-EEECBCTTCCC
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC-eEEEEeCcchh
Confidence 34689999999999999999999 999999876 489999999864 34445444443
No 64
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.54 E-value=2.4e-08 Score=75.41 Aligned_cols=55 Identities=15% Similarity=0.316 Sum_probs=48.5
Q ss_pred CCcCccccccccCCEee-cCCCCcchhhHHHHhccCCCCCCCcccccCCCccccCC
Q 015126 349 GDLCAICQEKMHAPILL-QCKHLFCEDCVSEWLERERTCPLCRALVKPADLRSFGD 403 (413)
Q Consensus 349 ~~~C~ICle~~~~pv~L-~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~~~~~~D 403 (413)
...|+||++.+.+|+.+ +|||+|+..||.+|+.++.+||+++..+...++.+..-
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECcc
Confidence 35799999999999999 99999999999999988888999999998777765443
No 65
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=7.7e-08 Score=75.56 Aligned_cols=47 Identities=21% Similarity=0.521 Sum_probs=40.1
Q ss_pred cCCcCccccccccCCEe-ecCCCCcchhhHHHHhccC--CCCCCCccccc
Q 015126 348 AGDLCAICQEKMHAPIL-LQCKHLFCEDCVSEWLERE--RTCPLCRALVK 394 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~-L~CgHiFC~~CI~~Wl~~~--~tCPlCR~~i~ 394 (413)
..+.|+||.+.+..... ..|+|.||..|+..|++.+ .+||+||+...
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 44689999999986654 3899999999999999876 79999998764
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.38 E-value=7.4e-08 Score=96.36 Aligned_cols=43 Identities=33% Similarity=1.019 Sum_probs=39.8
Q ss_pred cCCcCccccccccCCEeecCCCC-cchhhHHHHhccCCCCCCCccccc
Q 015126 348 AGDLCAICQEKMHAPILLQCKHL-FCEDCVSEWLERERTCPLCRALVK 394 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~CgHi-FC~~CI~~Wl~~~~tCPlCR~~i~ 394 (413)
.+..|+||++.+.+++.+||||. ||..|+..| ..||+||..+.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 45789999999999999999999 999999988 78999999885
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.36 E-value=8.9e-08 Score=91.95 Aligned_cols=51 Identities=29% Similarity=0.655 Sum_probs=43.8
Q ss_pred CCcCccccccccCCEee-cCCCCcchhhHHHHhccC--CCCCC--CcccccCCCcc
Q 015126 349 GDLCAICQEKMHAPILL-QCKHLFCEDCVSEWLERE--RTCPL--CRALVKPADLR 399 (413)
Q Consensus 349 ~~~C~ICle~~~~pv~L-~CgHiFC~~CI~~Wl~~~--~tCPl--CR~~i~~~~~~ 399 (413)
...|+||++.|.+|+.. .|||.||..||..|+... .+||. ||+.+...++.
T Consensus 181 el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 181 ELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp CSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred eeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence 35899999999999985 999999999999999764 47999 99988765543
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.22 E-value=6.3e-07 Score=67.40 Aligned_cols=48 Identities=23% Similarity=0.615 Sum_probs=39.5
Q ss_pred hcCCcCccccccccCCEeecCC--C---CcchhhHHHHhcc--CCCCCCCccccc
Q 015126 347 AAGDLCAICQEKMHAPILLQCK--H---LFCEDCVSEWLER--ERTCPLCRALVK 394 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~Cg--H---iFC~~CI~~Wl~~--~~tCPlCR~~i~ 394 (413)
+++..|.||++...++..+||. + .||..|+.+|+.. +.+||+||..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456899999987777778866 4 8999999999964 578999998775
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.15 E-value=2.6e-07 Score=74.96 Aligned_cols=52 Identities=21% Similarity=0.666 Sum_probs=40.5
Q ss_pred CCcCccccccccCCEee---cCCCCcchhhHHHHhcc--------CCCCCC--Cccc--ccCCCccc
Q 015126 349 GDLCAICQEKMHAPILL---QCKHLFCEDCVSEWLER--------ERTCPL--CRAL--VKPADLRS 400 (413)
Q Consensus 349 ~~~C~ICle~~~~pv~L---~CgHiFC~~CI~~Wl~~--------~~tCPl--CR~~--i~~~~~~~ 400 (413)
...|+||++.+..+..+ +|||.||.+|+..++.. .-.||. |+.. +.+.++..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ 71 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIEC 71 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHH
Confidence 45799999999877543 79999999999999863 137999 9998 66554443
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.02 E-value=1.3e-06 Score=86.68 Aligned_cols=47 Identities=23% Similarity=0.505 Sum_probs=37.7
Q ss_pred cCCcCccccccccCCE--------eecCCCCcchhhHHHHhccC-----------CCCCCCccccc
Q 015126 348 AGDLCAICQEKMHAPI--------LLQCKHLFCEDCVSEWLERE-----------RTCPLCRALVK 394 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv--------~L~CgHiFC~~CI~~Wl~~~-----------~tCPlCR~~i~ 394 (413)
....|+||++.+.+.. ..+|+|.||..|+.+|+... .+||+||+++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3458999999887621 24799999999999999752 37999999885
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.61 E-value=3e-05 Score=63.77 Aligned_cols=45 Identities=29% Similarity=0.752 Sum_probs=36.4
Q ss_pred cCccccccccC-CEeecCCCCcchhhHHHHhc-cCCCCCCCcccccC
Q 015126 351 LCAICQEKMHA-PILLQCKHLFCEDCVSEWLE-RERTCPLCRALVKP 395 (413)
Q Consensus 351 ~C~ICle~~~~-pv~L~CgHiFC~~CI~~Wl~-~~~tCPlCR~~i~~ 395 (413)
.|.+|--.+.. .+.+||+|+||.+|...|.+ +.++||.|+..+..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47778766654 35789999999999999975 46799999998853
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.89 E-value=0.00078 Score=63.86 Aligned_cols=46 Identities=20% Similarity=0.524 Sum_probs=38.1
Q ss_pred CCcCccccccccCCEee-cCCCCcchhhHHHHhccC--CCCCCCccccc
Q 015126 349 GDLCAICQEKMHAPILL-QCKHLFCEDCVSEWLERE--RTCPLCRALVK 394 (413)
Q Consensus 349 ~~~C~ICle~~~~pv~L-~CgHiFC~~CI~~Wl~~~--~tCPlCR~~i~ 394 (413)
-..|.||.+.......- .|+|.||..|+..|++.. ..||.|+...+
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 35799999998877654 499999999999999764 48999988654
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.57 E-value=0.013 Score=47.46 Aligned_cols=45 Identities=24% Similarity=0.768 Sum_probs=37.4
Q ss_pred CcCccccccccCCEeecCC-CCcchhhHHHHhccCCCCCCCcccccCC
Q 015126 350 DLCAICQEKMHAPILLQCK-HLFCEDCVSEWLERERTCPLCRALVKPA 396 (413)
Q Consensus 350 ~~C~ICle~~~~pv~L~Cg-HiFC~~CI~~Wl~~~~tCPlCR~~i~~~ 396 (413)
..|-.|+-..+. ...|. |..|..|+...+.....||+|..++..+
T Consensus 29 ~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 29 QFCKSCWFENKG--LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccChhhccccCC--eeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 479999977654 55676 8899999999999999999999988644
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.59 E-value=0.029 Score=45.25 Aligned_cols=31 Identities=19% Similarity=0.760 Sum_probs=26.3
Q ss_pred CCcCcccccc-ccCCEe--ecCCCCcchhhHHHH
Q 015126 349 GDLCAICQEK-MHAPIL--LQCKHLFCEDCVSEW 379 (413)
Q Consensus 349 ~~~C~ICle~-~~~pv~--L~CgHiFC~~CI~~W 379 (413)
+..|.||.+. ...++. +.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4579999976 567776 899999999999983
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=93.45 E-value=0.14 Score=57.11 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=45.3
Q ss_pred cCCcCccccccccCCEeecCC-CCcchhhHHHHhccCCCCCCCcccccCCCc
Q 015126 348 AGDLCAICQEKMHAPILLQCK-HLFCEDCVSEWLERERTCPLCRALVKPADL 398 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~Cg-HiFC~~CI~~Wl~~~~tCPlCR~~i~~~~~ 398 (413)
+...|+|-.+.|.+|+.++.| +.|=..+|.+|+.+..+||+-|.++...++
T Consensus 890 ~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l 941 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV 941 (968)
T ss_dssp GGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred HHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc
Confidence 346899999999999999998 589999999999998999999998876554
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=86.03 E-value=0.49 Score=35.71 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=32.7
Q ss_pred hhcCCcCccccccccCCEeecCCCCcchhhHHHHhccCC----CCCCCcccc
Q 015126 346 NAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERER----TCPLCRALV 393 (413)
Q Consensus 346 ~~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~----tCPlCR~~i 393 (413)
...+..|.||.+.-.--.--.|...||..|+...+.... .||.|+...
T Consensus 9 ~~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 9 LAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 344568999986422111125788999999988876532 799997654
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=80.80 E-value=1.2 Score=35.42 Aligned_cols=32 Identities=22% Similarity=0.693 Sum_probs=23.2
Q ss_pred hcCCcCccccccccCCEee---cCCCCcchhhHHHH
Q 015126 347 AAGDLCAICQEKMHAPILL---QCKHLFCEDCVSEW 379 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L---~CgHiFC~~CI~~W 379 (413)
..++.|.||-.-- ...++ -|+.+||..|+.+.
T Consensus 13 ~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 4678999997322 22333 47799999999996
No 78
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=71.63 E-value=3.3 Score=32.56 Aligned_cols=35 Identities=31% Similarity=0.754 Sum_probs=28.7
Q ss_pred cCCcCccccccccCCEeecC----CCCcchhhHHHHhcc
Q 015126 348 AGDLCAICQEKMHAPILLQC----KHLFCEDCVSEWLER 382 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~C----gHiFC~~CI~~Wl~~ 382 (413)
.-..|.+|++.+++.-...| .|.||..|-+..+++
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 34589999999998866656 589999999998864
No 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=70.51 E-value=1.4 Score=32.43 Aligned_cols=48 Identities=17% Similarity=0.423 Sum_probs=30.4
Q ss_pred hhcCCcCccccccccCCEeecCCCCcchhhHHHHhccC----CCCCCCcccc
Q 015126 346 NAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE----RTCPLCRALV 393 (413)
Q Consensus 346 ~~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~----~tCPlCR~~i 393 (413)
+..++.|.+|.+.-.--.--.|...||..|+..-+... =.||.|+...
T Consensus 6 d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 34567899998642111112577789999998654432 2699997643
No 80
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=67.43 E-value=2.3 Score=37.84 Aligned_cols=47 Identities=30% Similarity=0.557 Sum_probs=31.2
Q ss_pred cCCcCccccccccCCEeecCCCCcchhhHHHHhccC----CCCCCCccccc
Q 015126 348 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE----RTCPLCRALVK 394 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~----~tCPlCR~~i~ 394 (413)
.++.|.+|.+.-.--.--.|...||..|+..-+... =.||.|+..-.
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 457899998652211112577889999987765542 37999987543
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=66.46 E-value=1.3 Score=40.39 Aligned_cols=49 Identities=27% Similarity=0.502 Sum_probs=31.9
Q ss_pred hhcCCcCccccccccCCEeecCCCCcchhhHHHHhccC----CCCCCCccccc
Q 015126 346 NAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE----RTCPLCRALVK 394 (413)
Q Consensus 346 ~~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~----~tCPlCR~~i~ 394 (413)
+..++.|.+|...-.--.--.|...||..|+..-+... =.||.|+..-.
T Consensus 4 d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 4 DPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 34567899998542210112577889999997766542 27999987543
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=61.56 E-value=2.8 Score=30.78 Aligned_cols=42 Identities=24% Similarity=0.695 Sum_probs=29.2
Q ss_pred hcCCcCccccccccCCEee---cCCCCcchhhHHHHhcc----CCCCCCCcc
Q 015126 347 AAGDLCAICQEKMHAPILL---QCKHLFCEDCVSEWLER----ERTCPLCRA 391 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L---~CgHiFC~~CI~~Wl~~----~~tCPlCR~ 391 (413)
..+..|.+|.+.- ..+ .|...||..|+..-+.. .=.||.|+.
T Consensus 9 ~~~~~C~vC~~~g---~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQGG---EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCCS---SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCCC---cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4467899999742 233 56778999999875543 227999965
No 83
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=58.38 E-value=4.8 Score=40.20 Aligned_cols=49 Identities=31% Similarity=0.636 Sum_probs=35.6
Q ss_pred CCcCccccccccCCEe-ecCCCCcchhhHHHHhc---c--CCCCCCCcccccCCCc
Q 015126 349 GDLCAICQEKMHAPIL-LQCKHLFCEDCVSEWLE---R--ERTCPLCRALVKPADL 398 (413)
Q Consensus 349 ~~~C~ICle~~~~pv~-L~CgHiFC~~CI~~Wl~---~--~~tCPlCR~~i~~~~~ 398 (413)
...|++-...+..|++ ..|.|.-|.+- ..|+. + .-.||.|.+.+...++
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred eecCCCccccccccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 3589999999999975 67999977664 33442 2 3379999988765554
No 84
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=57.71 E-value=1.5 Score=32.81 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=29.8
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhccC----CCCCCCcccc
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE----RTCPLCRALV 393 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~----~tCPlCR~~i 393 (413)
..++.|.+|.+.-.--.--.|...||..|+..-+... =.||.|...-
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 4567899999752111112577789999998544332 2699996543
No 85
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=55.53 E-value=3.7 Score=36.97 Aligned_cols=45 Identities=31% Similarity=0.651 Sum_probs=29.8
Q ss_pred CCcCccccccccCCEeecCCCCcchhhHHHHhcc----CCCCCCCcccc
Q 015126 349 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER----ERTCPLCRALV 393 (413)
Q Consensus 349 ~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~----~~tCPlCR~~i 393 (413)
++.|.+|.+.-.--.--.|...||..|+..=+.. .-.||.|+..-
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 5689999965321112356678999999765543 22799997653
No 86
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=54.86 E-value=5.9 Score=39.41 Aligned_cols=48 Identities=25% Similarity=0.642 Sum_probs=35.2
Q ss_pred CcCccccccccCCEe-ecCCCCcchhhHHHHhc---c--CCCCCCCcccccCCCc
Q 015126 350 DLCAICQEKMHAPIL-LQCKHLFCEDCVSEWLE---R--ERTCPLCRALVKPADL 398 (413)
Q Consensus 350 ~~C~ICle~~~~pv~-L~CgHiFC~~CI~~Wl~---~--~~tCPlCR~~i~~~~~ 398 (413)
..|++-...+..|++ ..|.|.-|.+- ..|+. + .-.||.|.+.+...++
T Consensus 216 L~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp SBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred eeCCCccceeccCCcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccCHHHe
Confidence 579999999999975 68999966653 34442 2 2379999998865554
No 87
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=52.15 E-value=3 Score=31.61 Aligned_cols=48 Identities=19% Similarity=0.448 Sum_probs=32.1
Q ss_pred cCCcCccccccccCCEee---cCCCCcchhhHHHHhcc----CCCCCCCcccccC
Q 015126 348 AGDLCAICQEKMHAPILL---QCKHLFCEDCVSEWLER----ERTCPLCRALVKP 395 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L---~CgHiFC~~CI~~Wl~~----~~tCPlCR~~i~~ 395 (413)
.+..|.+|.........+ .|..-||..|+..-... .-.||.|+..+..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 345799998765443333 56778999998754432 2379999877653
No 88
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=51.27 E-value=8.1 Score=28.47 Aligned_cols=40 Identities=28% Similarity=0.684 Sum_probs=29.8
Q ss_pred CcCccccccccCCE---eecCCCCcchhhHHHHhccCCCCCCC
Q 015126 350 DLCAICQEKMHAPI---LLQCKHLFCEDCVSEWLERERTCPLC 389 (413)
Q Consensus 350 ~~C~ICle~~~~pv---~L~CgHiFC~~CI~~Wl~~~~tCPlC 389 (413)
..|--|+..+.+.. -..|++.||.+|=.=.-+.-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 35999999986544 35789999999954334556689988
No 89
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=49.81 E-value=5.9 Score=31.56 Aligned_cols=44 Identities=32% Similarity=0.711 Sum_probs=30.8
Q ss_pred hhcCCcCccccccccCCEee---cCCCCcchhhHHHHhccC----CCCCCCccc
Q 015126 346 NAAGDLCAICQEKMHAPILL---QCKHLFCEDCVSEWLERE----RTCPLCRAL 392 (413)
Q Consensus 346 ~~~~~~C~ICle~~~~pv~L---~CgHiFC~~CI~~Wl~~~----~tCPlCR~~ 392 (413)
...++.|.+|.+.- .++ .|.-.||..|+..=+... =.||.|+..
T Consensus 22 d~n~~~C~vC~~~g---~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSS---CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCC---CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 45567999999753 233 466789999997765442 269999754
No 90
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.80 E-value=1.4 Score=31.75 Aligned_cols=45 Identities=22% Similarity=0.631 Sum_probs=27.4
Q ss_pred hcCCcCccccccccCCEeecCCCCcchhhHHHHhccCC----CCCCCcc
Q 015126 347 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERER----TCPLCRA 391 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~----tCPlCR~ 391 (413)
..++.|.+|.+.-.--.--.|...||..|+..-+.... .||.|+.
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45678999997521111125777899999875443321 4777743
No 91
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=47.92 E-value=7.4 Score=27.09 Aligned_cols=41 Identities=27% Similarity=0.652 Sum_probs=26.6
Q ss_pred cCccccccccCCEee---cCCCCcchhhHHHHhccC----CCCCCCcc
Q 015126 351 LCAICQEKMHAPILL---QCKHLFCEDCVSEWLERE----RTCPLCRA 391 (413)
Q Consensus 351 ~C~ICle~~~~pv~L---~CgHiFC~~CI~~Wl~~~----~tCPlCR~ 391 (413)
.|.+|...-.....+ .|...||..|+..=+... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888654333333 577789999997544332 25898864
No 92
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=46.88 E-value=13 Score=32.15 Aligned_cols=46 Identities=22% Similarity=0.564 Sum_probs=31.2
Q ss_pred hhcCCcCccccccccCCEeecCCCCcchhhHHHHhc---------c--CCCCCCCcc
Q 015126 346 NAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLE---------R--ERTCPLCRA 391 (413)
Q Consensus 346 ~~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~---------~--~~tCPlCR~ 391 (413)
+..++.|.+|.+--.--.--.|-..||..|+.+-+. . .=.||.|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 445679999997543111225778999999997653 1 227999974
No 93
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=46.72 E-value=8.4 Score=30.42 Aligned_cols=47 Identities=23% Similarity=0.562 Sum_probs=31.4
Q ss_pred hcCCcCccccccccCCE----eecCCCCcchhhHHHHhc------cCCCCCCCcccc
Q 015126 347 AAGDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLE------RERTCPLCRALV 393 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv----~L~CgHiFC~~CI~~Wl~------~~~tCPlCR~~i 393 (413)
.+...|.+|...|.--. --.||++||..|...+.. ..+.|-.|-..+
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 34568999999886432 357999999999876531 133566665444
No 94
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=46.32 E-value=4.7 Score=31.90 Aligned_cols=52 Identities=17% Similarity=0.425 Sum_probs=33.0
Q ss_pred hcCCcCccccccc--cCCEee---cCCCCcchhhHHHHhcc--CCCCCCCcccccCCCc
Q 015126 347 AAGDLCAICQEKM--HAPILL---QCKHLFCEDCVSEWLER--ERTCPLCRALVKPADL 398 (413)
Q Consensus 347 ~~~~~C~ICle~~--~~pv~L---~CgHiFC~~CI~~Wl~~--~~tCPlCR~~i~~~~~ 398 (413)
+.+..|.||...- ....++ .|.-.||..|+..-... .=.||.|........+
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC-
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhh
Confidence 4567999999764 222333 56678999999754322 2269999776554443
No 95
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=46.14 E-value=4.3 Score=32.06 Aligned_cols=49 Identities=24% Similarity=0.575 Sum_probs=33.3
Q ss_pred hhcCCcCccccccccC--CEee---cCCCCcchhhHHHHhcc--------CCCCCCCccccc
Q 015126 346 NAAGDLCAICQEKMHA--PILL---QCKHLFCEDCVSEWLER--------ERTCPLCRALVK 394 (413)
Q Consensus 346 ~~~~~~C~ICle~~~~--pv~L---~CgHiFC~~CI~~Wl~~--------~~tCPlCR~~i~ 394 (413)
.+.+..|.+|...-.. ..++ .|...||..|+..-+.. .=.|+.|+....
T Consensus 13 ~e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 13 MEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 3457799999976431 2233 57788999999875542 227999977554
No 96
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=45.03 E-value=1.7 Score=31.74 Aligned_cols=46 Identities=22% Similarity=0.609 Sum_probs=29.1
Q ss_pred cCCcCccccccccCCEeecCCCCcchhhHHHHhccC----CCCCCCcccc
Q 015126 348 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE----RTCPLCRALV 393 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~----~tCPlCR~~i 393 (413)
.++.|.+|...-.--.--.|...||..|+..-+... =.||.|+...
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 467899999752111112577789999998644432 2688886543
No 97
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=44.66 E-value=4.6 Score=40.23 Aligned_cols=46 Identities=15% Similarity=0.447 Sum_probs=0.0
Q ss_pred cCCcCccccccccCCE----eecCCCCcchhhHHHHhc-------cCCCCCCCcccc
Q 015126 348 AGDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLE-------RERTCPLCRALV 393 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv----~L~CgHiFC~~CI~~Wl~-------~~~tCPlCR~~i 393 (413)
....|.+|...|.-.. .-.||++||..|...... ..+.|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3468999999886332 357999999999876541 235687776554
No 98
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.44 E-value=15 Score=33.76 Aligned_cols=45 Identities=22% Similarity=0.629 Sum_probs=30.5
Q ss_pred CCcCccccccccCCE----eecCCCCcchhhHHHHhc--------cCCCCCCCcccc
Q 015126 349 GDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLE--------RERTCPLCRALV 393 (413)
Q Consensus 349 ~~~C~ICle~~~~pv----~L~CgHiFC~~CI~~Wl~--------~~~tCPlCR~~i 393 (413)
++.|.+|...|.--. --.||++||..|-..... ..+.|-.|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 468999999886432 357999999999765421 134566665444
No 99
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=44.09 E-value=2 Score=36.17 Aligned_cols=45 Identities=29% Similarity=0.633 Sum_probs=29.8
Q ss_pred cCCcCccccccccCCE----eecCCCCcchhhHHHHhccCCCCCCCccc
Q 015126 348 AGDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLERERTCPLCRAL 392 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv----~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~ 392 (413)
....|..|...|.... --.||.+||..|........+.|-.|-..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 3468999999886432 35799999999987665556677777543
No 100
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.12 E-value=23 Score=26.83 Aligned_cols=44 Identities=36% Similarity=0.745 Sum_probs=31.1
Q ss_pred hcCCcCccccccccCC-EeecCCCCcchhhHHHHhccCCCCCCCcccccCCCc
Q 015126 347 AAGDLCAICQEKMHAP-ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADL 398 (413)
Q Consensus 347 ~~~~~C~ICle~~~~p-v~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~~ 398 (413)
.....|+-|.+.+... ....-+..||.+|. .|-.|+..+.....
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF--------~C~~C~~~L~~~~~ 57 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCF--------RCHTCEATLWPGGY 57 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTC--------BCSSSCCBCCTTSE
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcC--------EEcCCCCCcCCCce
Confidence 3456899999987532 33456778888884 68889888865543
No 101
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=43.00 E-value=23 Score=29.65 Aligned_cols=31 Identities=23% Similarity=0.685 Sum_probs=23.3
Q ss_pred CCcCccccccccCCE----eecCCCCcchhhHHHH
Q 015126 349 GDLCAICQEKMHAPI----LLQCKHLFCEDCVSEW 379 (413)
Q Consensus 349 ~~~C~ICle~~~~pv----~L~CgHiFC~~CI~~W 379 (413)
...|.+|...|.-.. --.||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 357999999886432 3479999999997543
No 102
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=42.36 E-value=11 Score=28.51 Aligned_cols=29 Identities=31% Similarity=0.695 Sum_probs=22.4
Q ss_pred CcCccccccccCCE----eecCCCCcchhhHHH
Q 015126 350 DLCAICQEKMHAPI----LLQCKHLFCEDCVSE 378 (413)
Q Consensus 350 ~~C~ICle~~~~pv----~L~CgHiFC~~CI~~ 378 (413)
..|.+|...|.--. --.||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 58999999886432 247999999999753
No 103
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=41.98 E-value=14 Score=30.20 Aligned_cols=49 Identities=10% Similarity=0.188 Sum_probs=37.4
Q ss_pred CcCccccccccC---CEeecCCCCcchhhHHHHhccCCCCCCCcccccCCCc
Q 015126 350 DLCAICQEKMHA---PILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADL 398 (413)
Q Consensus 350 ~~C~ICle~~~~---pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~~ 398 (413)
..|..|...+.+ .-...=+..||..|..+.+..+..|..|...|...++
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 378999888852 2345567789999998877765689999999876554
No 104
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=41.48 E-value=10 Score=29.51 Aligned_cols=32 Identities=19% Similarity=0.515 Sum_probs=24.2
Q ss_pred cCCcCccccccccCCE----eecCCCCcchhhHHHH
Q 015126 348 AGDLCAICQEKMHAPI----LLQCKHLFCEDCVSEW 379 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv----~L~CgHiFC~~CI~~W 379 (413)
+...|.+|...|.--. --.||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3458999999986432 2479999999997654
No 105
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.23 E-value=21 Score=26.33 Aligned_cols=37 Identities=16% Similarity=0.505 Sum_probs=25.0
Q ss_pred CcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCccccc
Q 015126 350 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 394 (413)
Q Consensus 350 ~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~ 394 (413)
..|+-|...+.......-+..||.+|. +|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 467788777766555566667777763 5777777765
No 106
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=39.11 E-value=25 Score=26.46 Aligned_cols=42 Identities=24% Similarity=0.616 Sum_probs=26.8
Q ss_pred cCCcCccccccccCCEeec-----CC-CCcchhhHHHHhcc----CCCCCCCcccc
Q 015126 348 AGDLCAICQEKMHAPILLQ-----CK-HLFCEDCVSEWLER----ERTCPLCRALV 393 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~-----Cg-HiFC~~CI~~Wl~~----~~tCPlCR~~i 393 (413)
+...| +|...... ..+. |. .-||..|+. +.. +-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSCS-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCCC-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 89886443 3343 55 579999997 333 23799997653
No 107
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=37.77 E-value=57 Score=27.62 Aligned_cols=30 Identities=23% Similarity=0.665 Sum_probs=21.6
Q ss_pred cCCcCcccccccc--CC---EeecCCCCcchhhHH
Q 015126 348 AGDLCAICQEKMH--AP---ILLQCKHLFCEDCVS 377 (413)
Q Consensus 348 ~~~~C~ICle~~~--~p---v~L~CgHiFC~~CI~ 377 (413)
.+..|.+|...+. .. .-..|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4568999999883 11 345788888888854
No 108
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=37.72 E-value=34 Score=29.72 Aligned_cols=43 Identities=23% Similarity=0.571 Sum_probs=27.7
Q ss_pred cCCcCccccccccC-----CEeecCCCCcchhhHHHHhccCC--CCCCCcc
Q 015126 348 AGDLCAICQEKMHA-----PILLQCKHLFCEDCVSEWLERER--TCPLCRA 391 (413)
Q Consensus 348 ~~~~C~ICle~~~~-----pv~L~CgHiFC~~CI~~Wl~~~~--tCPlCR~ 391 (413)
.+..|.+|...|.- ..-..|+|.+|..|- .|..... .|-+|++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 45689999998631 234679999999996 2332222 4666644
No 109
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=37.28 E-value=12 Score=28.94 Aligned_cols=31 Identities=26% Similarity=0.717 Sum_probs=23.6
Q ss_pred CCcCccccccccCCE----eecCCCCcchhhHHHH
Q 015126 349 GDLCAICQEKMHAPI----LLQCKHLFCEDCVSEW 379 (413)
Q Consensus 349 ~~~C~ICle~~~~pv----~L~CgHiFC~~CI~~W 379 (413)
...|.+|...|.--. --.||.+||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 347999999986432 2479999999998653
No 110
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=36.81 E-value=13 Score=28.04 Aligned_cols=32 Identities=28% Similarity=0.602 Sum_probs=24.2
Q ss_pred cCCcCccccccccCCEeecC-CCCcchhhHHHHh
Q 015126 348 AGDLCAICQEKMHAPILLQC-KHLFCEDCVSEWL 380 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~C-gHiFC~~CI~~Wl 380 (413)
+..-|.||.++-. -+-+.| +-.||..|.++.-
T Consensus 7 e~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 3458999999833 345678 7889999988875
No 111
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=36.27 E-value=12 Score=30.45 Aligned_cols=13 Identities=38% Similarity=1.232 Sum_probs=11.1
Q ss_pred CcchhhHHHHhcc
Q 015126 370 LFCEDCVSEWLER 382 (413)
Q Consensus 370 iFC~~CI~~Wl~~ 382 (413)
.||..|+..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999863
No 112
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=36.03 E-value=12 Score=30.36 Aligned_cols=12 Identities=42% Similarity=1.356 Sum_probs=10.7
Q ss_pred CcchhhHHHHhc
Q 015126 370 LFCEDCVSEWLE 381 (413)
Q Consensus 370 iFC~~CI~~Wl~ 381 (413)
.||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 113
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=35.83 E-value=9.9 Score=30.86 Aligned_cols=35 Identities=17% Similarity=0.430 Sum_probs=25.1
Q ss_pred hcCCcCccccccccCC--E-eecCCCCcchhhHHHHhc
Q 015126 347 AAGDLCAICQEKMHAP--I-LLQCKHLFCEDCVSEWLE 381 (413)
Q Consensus 347 ~~~~~C~ICle~~~~p--v-~L~CgHiFC~~CI~~Wl~ 381 (413)
..++.|.+|.+.-... + --.|...||..|+.....
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 3567899998765432 1 236888999999987764
No 114
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=34.70 E-value=14 Score=33.12 Aligned_cols=45 Identities=20% Similarity=0.528 Sum_probs=30.3
Q ss_pred CCcCccccccccCCE----ee---cCCCCcchhhHHHH------hc-----cCCCCCCCcccc
Q 015126 349 GDLCAICQEKMHAPI----LL---QCKHLFCEDCVSEW------LE-----RERTCPLCRALV 393 (413)
Q Consensus 349 ~~~C~ICle~~~~pv----~L---~CgHiFC~~CI~~W------l~-----~~~tCPlCR~~i 393 (413)
|+.|+||...+.... .+ .|..-||..|+.-- +. ..-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 568999998776542 33 57778999997431 11 145899998754
No 115
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.65 E-value=33 Score=24.65 Aligned_cols=39 Identities=15% Similarity=0.473 Sum_probs=27.2
Q ss_pred CcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccCC
Q 015126 350 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 396 (413)
Q Consensus 350 ~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~ 396 (413)
..|+-|.+.+.......-+..||.+|. +|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKECF--------VCTACRKQLSGQ 44 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTTS--------BCSSSCCBCTTS
T ss_pred CCCcccCCeeccceEEECccccCCCCC--------ccCCCCCcCCcC
Confidence 468888887776555566677777774 577888777543
No 116
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.32 E-value=6.2 Score=31.40 Aligned_cols=46 Identities=22% Similarity=0.442 Sum_probs=30.4
Q ss_pred hcCCcCccccccccCCEee---cCCCCcchhhHHHHhccC----CCCCCCccc
Q 015126 347 AAGDLCAICQEKMHAPILL---QCKHLFCEDCVSEWLERE----RTCPLCRAL 392 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L---~CgHiFC~~CI~~Wl~~~----~tCPlCR~~ 392 (413)
.++..|.||...-....++ .|...||..|+..=+... =.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3456899999765433333 577789999997544332 269999654
No 117
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=34.28 E-value=21 Score=27.23 Aligned_cols=57 Identities=23% Similarity=0.605 Sum_probs=35.0
Q ss_pred CCcCcccccccc-CCEee---cCCCCcchhhHHHHhc-----cCCCCCCCcccccCCCccccCCCCc
Q 015126 349 GDLCAICQEKMH-APILL---QCKHLFCEDCVSEWLE-----RERTCPLCRALVKPADLRSFGDGST 406 (413)
Q Consensus 349 ~~~C~ICle~~~-~pv~L---~CgHiFC~~CI~~Wl~-----~~~tCPlCR~~i~~~~~~~~~Dgst 406 (413)
...| +|..... ....+ .|..-||..|+.---. ..-.||.|+..-.+..+..+.++..
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~~K~~~~~~~ 77 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSIMKNWHSGPS 77 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSCBCCCCCCSCC
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCCCceeeeccccC
Confidence 3456 8987763 22222 4777799999853221 2347999988766555566655543
No 118
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.41 E-value=31 Score=25.80 Aligned_cols=41 Identities=15% Similarity=0.360 Sum_probs=31.5
Q ss_pred CCcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccCCC
Q 015126 349 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 397 (413)
Q Consensus 349 ~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~ 397 (413)
...|+-|.+.+.......-+..||.+|. +|..|+..+....
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~~~ 55 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDHF--------NCANCGKELTADA 55 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTTS--------BCSSSCCBCCTTC
T ss_pred CCCCccCCCEecceEEEECcceeCCCCC--------EeCCCCCccCCCC
Confidence 4589999998886666667778888874 6899998887553
No 119
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=33.37 E-value=12 Score=34.04 Aligned_cols=31 Identities=23% Similarity=0.700 Sum_probs=23.4
Q ss_pred CCcCccccccccCCE----eecCCCCcchhhHHHH
Q 015126 349 GDLCAICQEKMHAPI----LLQCKHLFCEDCVSEW 379 (413)
Q Consensus 349 ~~~C~ICle~~~~pv----~L~CgHiFC~~CI~~W 379 (413)
+..|.+|...|.--. --.||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 468999999886332 3479999999997543
No 120
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.91 E-value=27 Score=26.75 Aligned_cols=42 Identities=17% Similarity=0.477 Sum_probs=32.7
Q ss_pred cCCcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccCCC
Q 015126 348 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 397 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~ 397 (413)
....|+-|.+.+.......-+..||.+|. .|..|+..+....
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~~~ 65 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEEF--------NCAHCKNTMAYIG 65 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTTC--------BCSSSCCBCSSSC
T ss_pred CCCCCccCCCEecceEEEECCccccccCC--------ccCCCCCCCCCCE
Confidence 34689999998877666677888888884 6889998887543
No 121
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.34 E-value=15 Score=28.45 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=22.8
Q ss_pred CCcCccccccccCCE----eecCCCCcchhhHHH
Q 015126 349 GDLCAICQEKMHAPI----LLQCKHLFCEDCVSE 378 (413)
Q Consensus 349 ~~~C~ICle~~~~pv----~L~CgHiFC~~CI~~ 378 (413)
...|.+|...|..-. --.||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 358999999986432 247999999999654
No 122
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.64 E-value=41 Score=24.27 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=28.9
Q ss_pred CCcCcccccccc--CCEeecCCCCcchhhHHHHhccCCCCCCCcccccCCC
Q 015126 349 GDLCAICQEKMH--APILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 397 (413)
Q Consensus 349 ~~~C~ICle~~~--~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~ 397 (413)
...|.-|.+.+. +.+...-+..||.+|. +|-.|+.++....
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 47 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCF--------LCSGCEQPLGSRS 47 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTC--------BCTTTCCBTTTSC
T ss_pred CCCCccCCCccccCccEEEECccccCcccC--------eECCCCCcCCCCc
Confidence 357888888877 3455566778888774 5888888776443
No 123
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.48 E-value=29 Score=25.90 Aligned_cols=41 Identities=24% Similarity=0.675 Sum_probs=29.7
Q ss_pred CCcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccCCC
Q 015126 349 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 397 (413)
Q Consensus 349 ~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~ 397 (413)
...|+.|.+.+.......-+..||.+|. +|-.|++.+...+
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~wH~~CF--------~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 15 GTRCFSCDQFIEGEVVSALGKTYHPDCF--------VCAVCRLPFPPGD 55 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTTS--------SCSSSCCCCCSSS
T ss_pred CCcCccccCEeccceEEECCceeCccCC--------ccccCCCCCCCCC
Confidence 3479999988876555566777888774 5888888876443
No 124
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.37 E-value=26 Score=25.29 Aligned_cols=40 Identities=18% Similarity=0.531 Sum_probs=27.4
Q ss_pred CcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccCCC
Q 015126 350 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 397 (413)
Q Consensus 350 ~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~ 397 (413)
..|.-|.+.+.......-+..||.+|. +|-.|+..+....
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 45 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPECF--------RCDLCQEVLADIG 45 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTTS--------BCSSSCCBCSSSC
T ss_pred CcCccCCCEecceEEEECcccccccCC--------EeCCCCCcCCCCc
Confidence 468888887765555556667777774 5778887776543
No 125
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.29 E-value=9.8 Score=27.90 Aligned_cols=33 Identities=24% Similarity=0.644 Sum_probs=21.0
Q ss_pred CcCccccccccCCE-----ee-c--CCCCcchhhHHHHhcc
Q 015126 350 DLCAICQEKMHAPI-----LL-Q--CKHLFCEDCVSEWLER 382 (413)
Q Consensus 350 ~~C~ICle~~~~pv-----~L-~--CgHiFC~~CI~~Wl~~ 382 (413)
-.|+-|....+... .- . |++.||..|...|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 36888887765431 22 2 7777888777777543
No 126
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.09 E-value=43 Score=25.50 Aligned_cols=41 Identities=17% Similarity=0.412 Sum_probs=31.9
Q ss_pred CCcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccCCC
Q 015126 349 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 397 (413)
Q Consensus 349 ~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~ 397 (413)
...|.-|.+.+.......-+..||.+|. .|-.|+..+....
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 65 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPECF--------VCADCNLNLKQKG 65 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTTC--------CCSSSCCCTTTSC
T ss_pred CCCcccCCCEecccEEEECCceECccCC--------EecCCCCCCCCCC
Confidence 4589999998887666667788898884 6889998886544
No 127
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=30.85 E-value=31 Score=29.24 Aligned_cols=47 Identities=21% Similarity=0.533 Sum_probs=30.1
Q ss_pred hhcCCcCccccccccCCEeecCCCCcchhhHHHHhc---------c--CCCCCCCccc
Q 015126 346 NAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLE---------R--ERTCPLCRAL 392 (413)
Q Consensus 346 ~~~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~---------~--~~tCPlCR~~ 392 (413)
+..++.|.+|.+--+-..--.|-..||.+|+.+-+. . .=.|+.|+..
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345568999997532111125778999999997421 1 1279999553
No 128
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.27 E-value=35 Score=25.45 Aligned_cols=40 Identities=23% Similarity=0.507 Sum_probs=29.0
Q ss_pred CCcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccCC
Q 015126 349 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 396 (413)
Q Consensus 349 ~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~ 396 (413)
...|+-|.+.+.......-+..||.+|. +|..|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGCF--------TCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTTC--------BCSSSCCBCTTS
T ss_pred CCccccCCCeecceeEEECCccccHHhc--------CcccCCCccCCC
Confidence 4578888888776555566777887774 588898887643
No 129
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.98 E-value=33 Score=27.26 Aligned_cols=40 Identities=25% Similarity=0.660 Sum_probs=25.7
Q ss_pred CcCccccccccCCEeec-----CC-CCcchhhHHHHhcc----CCCCCCCcccc
Q 015126 350 DLCAICQEKMHAPILLQ-----CK-HLFCEDCVSEWLER----ERTCPLCRALV 393 (413)
Q Consensus 350 ~~C~ICle~~~~pv~L~-----Cg-HiFC~~CI~~Wl~~----~~tCPlCR~~i 393 (413)
..| +|...... ..+. |. .-||..|+. +.. +-.||.|+..-
T Consensus 37 ~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 37 TYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp BCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred cEE-ECCCCCCC-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 467 99886443 2333 54 469999997 333 23799997653
No 130
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=29.80 E-value=16 Score=28.67 Aligned_cols=46 Identities=22% Similarity=0.545 Sum_probs=31.4
Q ss_pred CCcCccccccccCCE----eecCCCCcchhhHHHHh-------ccCCCCCCCccccc
Q 015126 349 GDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWL-------ERERTCPLCRALVK 394 (413)
Q Consensus 349 ~~~C~ICle~~~~pv----~L~CgHiFC~~CI~~Wl-------~~~~tCPlCR~~i~ 394 (413)
...|.+|...|..-. --.||.+||..|..... +..+.|-.|-..+.
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 357999999886432 24799999999986532 12346777755543
No 131
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.20 E-value=49 Score=24.51 Aligned_cols=38 Identities=18% Similarity=0.685 Sum_probs=28.5
Q ss_pred CcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccC
Q 015126 350 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 395 (413)
Q Consensus 350 ~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~ 395 (413)
..|+.|.+.+.......-+..||.+|. .|..|+..+..
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPECF--------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTSC--------BCTTTCCBCCT
T ss_pred CcCccCCCCcCceEEEECCceeccccC--------CccCCCCccCC
Confidence 479999988876655566777887774 58889888754
No 132
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=29.12 E-value=38 Score=24.04 Aligned_cols=40 Identities=10% Similarity=0.363 Sum_probs=29.2
Q ss_pred CcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccCCC
Q 015126 350 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 397 (413)
Q Consensus 350 ~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~ 397 (413)
..|+.|.+.+.......-+..||.+|. .|..|+.++....
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 45 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEHF--------VCAKCEKPFLGHR 45 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTTC--------BCTTTCCBCSSSC
T ss_pred CCCcccCCEecceEEEECccccccCcC--------EECCCCCCCCCCc
Confidence 478889888876655566777888774 5888888876433
No 133
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.71 E-value=28 Score=25.97 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=30.7
Q ss_pred CCcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccC
Q 015126 349 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 395 (413)
Q Consensus 349 ~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~ 395 (413)
...|.-|.+.+.......-+..||.+|. +|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCcC--------eeCCCCCCCCC
Confidence 4689999998877666677788888885 68889888753
No 134
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.83 E-value=14 Score=30.38 Aligned_cols=26 Identities=19% Similarity=0.489 Sum_probs=16.9
Q ss_pred CEeecCCCCcchhhHHHHhccCCCCCCCccc
Q 015126 362 PILLQCKHLFCEDCVSEWLERERTCPLCRAL 392 (413)
Q Consensus 362 pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~ 392 (413)
+....||+.|+. -+.....||.|+..
T Consensus 68 ~~C~~CG~~F~~-----~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 68 AQCRKCGFVFKA-----EINIPSRCPKCKSE 93 (105)
T ss_dssp CBBTTTCCBCCC-----CSSCCSSCSSSCCC
T ss_pred cChhhCcCeecc-----cCCCCCCCcCCCCC
Confidence 344569998831 23445689999774
No 135
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=27.53 E-value=72 Score=25.43 Aligned_cols=47 Identities=26% Similarity=0.728 Sum_probs=32.6
Q ss_pred cCCcCccccccccCC----Eee---cCCCCcchhhHHHHh-ccCCCCCCCccccc
Q 015126 348 AGDLCAICQEKMHAP----ILL---QCKHLFCEDCVSEWL-ERERTCPLCRALVK 394 (413)
Q Consensus 348 ~~~~C~ICle~~~~p----v~L---~CgHiFC~~CI~~Wl-~~~~tCPlCR~~i~ 394 (413)
....|.||-+..-.. ... .|+--.|..|+.-=. +.++.||.|+...+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 456999999986422 233 355557999986433 34678999998875
No 136
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=27.11 E-value=40 Score=33.77 Aligned_cols=45 Identities=24% Similarity=0.565 Sum_probs=30.6
Q ss_pred cCCcCccccccccCCE--eecCCCCcchhhHHHHhcc----------CCCCCCCccc
Q 015126 348 AGDLCAICQEKMHAPI--LLQCKHLFCEDCVSEWLER----------ERTCPLCRAL 392 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv--~L~CgHiFC~~CI~~Wl~~----------~~tCPlCR~~ 392 (413)
.+..|.+|-+--.--. .-.|...||.+||+..+.+ .=.|=+|...
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3458888887542211 2268899999999999853 1278888653
No 137
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.97 E-value=58 Score=23.50 Aligned_cols=40 Identities=18% Similarity=0.411 Sum_probs=28.8
Q ss_pred CCcCccccccccC----CEeecCCCCcchhhHHHHhccCCCCCCCcccccCC
Q 015126 349 GDLCAICQEKMHA----PILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 396 (413)
Q Consensus 349 ~~~C~ICle~~~~----pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~ 396 (413)
...|+-|.+.+.. .+...-+..||.+|. +|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF--------~C~~C~~~L~~~ 48 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCF--------NCKKCSLSLVGR 48 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTC--------BCSSSCCBCTTS
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccC--------EeccCCCcCCCC
Confidence 3579999988774 444556778888874 688888887644
No 138
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=26.75 E-value=8.5 Score=29.68 Aligned_cols=20 Identities=30% Similarity=0.938 Sum_probs=16.1
Q ss_pred cCCCCcchhhHHHHhccCCCCC
Q 015126 366 QCKHLFCEDCVSEWLERERTCP 387 (413)
Q Consensus 366 ~CgHiFC~~CI~~Wl~~~~tCP 387 (413)
.|++.||..|...|-. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6899999999998865 4554
No 139
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.56 E-value=39 Score=24.36 Aligned_cols=39 Identities=15% Similarity=0.402 Sum_probs=26.4
Q ss_pred CcCccccccccC--CEeecCCCCcchhhHHHHhccCCCCCCCcccccCC
Q 015126 350 DLCAICQEKMHA--PILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 396 (413)
Q Consensus 350 ~~C~ICle~~~~--pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~ 396 (413)
..|+.|.+.+.. .+...-+..||.+|. .|-.|+..+...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEECcCeecccCC--------cccccCCccCCC
Confidence 478888887773 344456667777774 577887777544
No 140
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=26.45 E-value=40 Score=27.42 Aligned_cols=47 Identities=11% Similarity=0.363 Sum_probs=33.3
Q ss_pred CcCccccccccC---CEeecCCCCcchhhHHHHhccCCCCCCCcccccCC
Q 015126 350 DLCAICQEKMHA---PILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 396 (413)
Q Consensus 350 ~~C~ICle~~~~---pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~ 396 (413)
..|..|...+.. +-...=+..||..|..+-+.....|..|...|...
T Consensus 30 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 79 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTT
T ss_pred cccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCcc
Confidence 478888888752 33445667899999887665444799998888653
No 141
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=26.37 E-value=31 Score=30.31 Aligned_cols=44 Identities=23% Similarity=0.550 Sum_probs=29.0
Q ss_pred CCcCccccccccCCE--eecCCCCcchhhHHHHhccC----------CCCCCCccc
Q 015126 349 GDLCAICQEKMHAPI--LLQCKHLFCEDCVSEWLERE----------RTCPLCRAL 392 (413)
Q Consensus 349 ~~~C~ICle~~~~pv--~L~CgHiFC~~CI~~Wl~~~----------~tCPlCR~~ 392 (413)
+..|.+|-+--.--. ...|...||.+||+..+.+. =.|=+|...
T Consensus 79 ~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 79 QSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp BSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred cceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 457888886431101 12577899999999998651 168888543
No 142
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=26.07 E-value=19 Score=28.76 Aligned_cols=41 Identities=20% Similarity=0.450 Sum_probs=26.6
Q ss_pred CcCccccccccCCEee---cCCCCcchhhHHHHhcc---CCCCCCCcc
Q 015126 350 DLCAICQEKMHAPILL---QCKHLFCEDCVSEWLER---ERTCPLCRA 391 (413)
Q Consensus 350 ~~C~ICle~~~~pv~L---~CgHiFC~~CI~~Wl~~---~~tCPlCR~ 391 (413)
..| ||.........+ .|...||..|+..-... .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 357 787665555444 46678999998653322 237999974
No 143
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=25.85 E-value=29 Score=28.37 Aligned_cols=43 Identities=21% Similarity=0.473 Sum_probs=27.1
Q ss_pred hhcCCcCccccccccCCEeec-----CCCCcchhhHHHHhccC----CCCCCCcccc
Q 015126 346 NAAGDLCAICQEKMHAPILLQ-----CKHLFCEDCVSEWLERE----RTCPLCRALV 393 (413)
Q Consensus 346 ~~~~~~C~ICle~~~~pv~L~-----CgHiFC~~CI~~Wl~~~----~tCPlCR~~i 393 (413)
...++.|.+|.+. ...+- |-..||..|+. +... =.||.|+..+
T Consensus 12 ~~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 12 QMHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CSSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 4566789999943 23333 55789999986 4432 1577665443
No 144
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.50 E-value=39 Score=24.26 Aligned_cols=37 Identities=16% Similarity=0.450 Sum_probs=23.8
Q ss_pred CcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCccccc
Q 015126 350 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 394 (413)
Q Consensus 350 ~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~ 394 (413)
..|+-|.+.+.......-+..||.+|. +|..|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTTTT--------BCTTTCCBCT
T ss_pred CCCcccCCEeCcceEEECccccccCcC--------EECCCCCCCC
Confidence 467777777655444445666776663 4777777765
No 145
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.30 E-value=48 Score=24.28 Aligned_cols=40 Identities=18% Similarity=0.469 Sum_probs=28.6
Q ss_pred CCcCcccccccc-CCEeecCCCCcchhhHHHHhccCCCCCCCcccccCC
Q 015126 349 GDLCAICQEKMH-APILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 396 (413)
Q Consensus 349 ~~~C~ICle~~~-~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~ 396 (413)
...|+.|.+.+. ......-+..||.+|. .|..|+.++...
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCCC--------CCCCCCCccCCC
Confidence 357999998876 4444556777887774 588888887644
No 146
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.30 E-value=9.4 Score=27.83 Aligned_cols=45 Identities=24% Similarity=0.586 Sum_probs=28.7
Q ss_pred cCCcCccccccccC-CEee---cCCCCcchhhHHHHhc-----cCCCCCCCccc
Q 015126 348 AGDLCAICQEKMHA-PILL---QCKHLFCEDCVSEWLE-----RERTCPLCRAL 392 (413)
Q Consensus 348 ~~~~C~ICle~~~~-pv~L---~CgHiFC~~CI~~Wl~-----~~~tCPlCR~~ 392 (413)
++..|++|.....+ ...+ .|..-||..|+.--.. ..-.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45689999987642 2222 5666789999864322 23479999653
No 147
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.34 E-value=53 Score=24.08 Aligned_cols=38 Identities=13% Similarity=0.442 Sum_probs=27.1
Q ss_pred CcCccccccccC----CEeecCCCCcchhhHHHHhccCCCCCCCcccccC
Q 015126 350 DLCAICQEKMHA----PILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 395 (413)
Q Consensus 350 ~~C~ICle~~~~----pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~ 395 (413)
..|+.|.+.+.. .....-+..||.+|. .|..|+.++..
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCCC
Confidence 578888888774 455556677888774 57888777753
No 148
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.34 E-value=68 Score=23.69 Aligned_cols=41 Identities=17% Similarity=0.457 Sum_probs=29.7
Q ss_pred CCcCcccccccc--CCEeecCCCCcchhhHHHHhccCCCCCCCcccccCCC
Q 015126 349 GDLCAICQEKMH--APILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 397 (413)
Q Consensus 349 ~~~C~ICle~~~--~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~ 397 (413)
...|+.|.+.+. +.+...-+..||.+|. +|-.|++.+....
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 57 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCF--------TCSNCKQVIGTGS 57 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTTC--------CCSSSCCCCTTSC
T ss_pred CCcCccCCcccccCceEEEECccccccccC--------chhhCCCccCCCc
Confidence 357999998887 4455556777888774 6888988876543
No 149
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=24.31 E-value=26 Score=30.85 Aligned_cols=47 Identities=13% Similarity=0.388 Sum_probs=30.8
Q ss_pred CcCccccccccC---CEeecCCCCcchhhHHHHhccCCCCCCCcccccCC
Q 015126 350 DLCAICQEKMHA---PILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 396 (413)
Q Consensus 350 ~~C~ICle~~~~---pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~ 396 (413)
..|..|...+.. .....=+..||..|..+-+.....|..|.+.|...
T Consensus 33 F~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred cccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC
Confidence 467778777653 33444567788888776655333688888877643
No 150
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=24.01 E-value=7.3 Score=25.55 Aligned_cols=14 Identities=21% Similarity=0.700 Sum_probs=9.4
Q ss_pred CCcCccccccccCC
Q 015126 349 GDLCAICQEKMHAP 362 (413)
Q Consensus 349 ~~~C~ICle~~~~p 362 (413)
+..|++|+..+..+
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 46777777766654
No 151
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=23.61 E-value=21 Score=29.06 Aligned_cols=41 Identities=29% Similarity=0.703 Sum_probs=26.6
Q ss_pred cCccccccc-cCCEee---cCCCCcchhhHHHHhccC----CCCCCCcc
Q 015126 351 LCAICQEKM-HAPILL---QCKHLFCEDCVSEWLERE----RTCPLCRA 391 (413)
Q Consensus 351 ~C~ICle~~-~~pv~L---~CgHiFC~~CI~~Wl~~~----~tCPlCR~ 391 (413)
.|.+|.+.- .....+ .|...||..|+..-+... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 577887642 222233 577889999997655432 27898864
No 152
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=23.54 E-value=56 Score=26.54 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=26.6
Q ss_pred CcCccccccccC--CEeecCCCCcchhhHHHHhccCCCCCCCcccccCCC
Q 015126 350 DLCAICQEKMHA--PILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 397 (413)
Q Consensus 350 ~~C~ICle~~~~--pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~ 397 (413)
..|..|...+.. .....=+..||..|....+.. .|..|.......+
T Consensus 37 F~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~--~~~~~~~~~~~~~ 84 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI--NGGSGGSGGSGGD 84 (123)
T ss_dssp CBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH--HTCCCCCCSCCSC
T ss_pred CccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc--ccCCCCCCCccCC
Confidence 367777777732 233445677888887776542 3555654443333
No 153
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=22.93 E-value=17 Score=35.29 Aligned_cols=46 Identities=24% Similarity=0.530 Sum_probs=33.4
Q ss_pred hcCCcCccccccccCCEee----cCC--CCcchhhHHHHhccCCCCCCCccc
Q 015126 347 AAGDLCAICQEKMHAPILL----QCK--HLFCEDCVSEWLERERTCPLCRAL 392 (413)
Q Consensus 347 ~~~~~C~ICle~~~~pv~L----~Cg--HiFC~~CI~~Wl~~~~tCPlCR~~ 392 (413)
.....|++|-....-.+.. .=| +..|.-|-.+|-...-.||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4457999999876544332 123 567888999998878899999775
No 154
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=21.61 E-value=8.1 Score=31.38 Aligned_cols=42 Identities=24% Similarity=0.519 Sum_probs=28.4
Q ss_pred cCCcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCccccc
Q 015126 348 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 394 (413)
Q Consensus 348 ~~~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~ 394 (413)
.+..||.|+.++... =++.+|..|-+. +.....||-|.+++.
T Consensus 31 M~~~CP~Cq~eL~~~----g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQD----NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEEE----TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccccCccCCCcceec----CCEEECccccch-hhccccCcchhhHHH
Confidence 347899999887531 134458878654 455668999988763
No 155
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.10 E-value=55 Score=24.10 Aligned_cols=40 Identities=15% Similarity=0.399 Sum_probs=28.3
Q ss_pred CcCccccccccCCEeecCCCCcchhhHHHHhccCCCCCCCcccccCCC
Q 015126 350 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 397 (413)
Q Consensus 350 ~~C~ICle~~~~pv~L~CgHiFC~~CI~~Wl~~~~tCPlCR~~i~~~~ 397 (413)
..|+.|.+.+.......-+..||.+|. .|..|+.++....
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~~~ 55 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLSAMDTVWHPECF--------VCGDCFTSFSTGS 55 (80)
T ss_dssp CBCTTTCCBCCSSCEEETTEEECTTTC--------BCSSSCCBSCSSC
T ss_pred CccccCCCeecceeEEECCCeEecCcC--------ChhhCCCCCCCCc
Confidence 578888887776555556667777774 5888888886543
Done!