BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015127
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g
Length = 392
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 188/319 (58%), Positives = 243/319 (76%), Gaps = 3/319 (0%)
Query: 94 KDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEV 152
+DVP A+++ LF++KL CCV+FDF +DP +LK K++KR L E+V+Y++ E
Sbjct: 43 RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 102
Query: 153 VMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRFVASP 212
+ E+V M + N+FRTL PP N FD EE+EP+++ AWPHLQ+VYEF LRF+ SP
Sbjct: 103 IYPEVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 160
Query: 213 ETDAKLAKRYIDHSFVLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIF 272
+ +AK+YID FVL+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIF
Sbjct: 161 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 220
Query: 273 YRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLS 332
YRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +++YH QL+
Sbjct: 221 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 280
Query: 333 YCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLF 392
YC+ QF+EKD L + V+ LLKYWP T+S KEVMFL ELEE+L+ +P EF + M PLF
Sbjct: 281 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 340
Query: 393 HQIGRCLSSSHFQVGSSLL 411
Q+ +C+SS HFQV L
Sbjct: 341 RQLAKCVSSPHFQVAERAL 359
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|E Chain E, Structure Of The Protein Phosphatase 2a Holoenzyme
Length = 449
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 188/319 (58%), Positives = 243/319 (76%), Gaps = 3/319 (0%)
Query: 94 KDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEV 152
+DVP A+++ LF++KL CCV+FDF +DP +LK K++KR L E+V+Y++ E
Sbjct: 31 RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 90
Query: 153 VMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRFVASP 212
+ E+V M + N+FRTL PP N FD EE+EP+++ AWPHLQ+VYEF LRF+ SP
Sbjct: 91 IYPEVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 148
Query: 213 ETDAKLAKRYIDHSFVLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIF 272
+ +AK+YID FVL+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIF
Sbjct: 149 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 208
Query: 273 YRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLS 332
YRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +++YH QL+
Sbjct: 209 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 268
Query: 333 YCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLF 392
YC+ QF+EKD L + V+ LLKYWP T+S KEVMFL ELEE+L+ +P EF + M PLF
Sbjct: 269 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 328
Query: 393 HQIGRCLSSSHFQVGSSLL 411
Q+ +C+SS HFQV L
Sbjct: 329 RQLAKCVSSPHFQVAERAL 347
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|E Chain E, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 407
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 188/319 (58%), Positives = 243/319 (76%), Gaps = 3/319 (0%)
Query: 94 KDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEV 152
+DVP A+++ LF++KL CCV+FDF +DP +LK K++KR L E+V+Y++ E
Sbjct: 2 RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 61
Query: 153 VMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRFVASP 212
+ E+V M + N+FRTL PP N FD EE+EP+++ AWPHLQ+VYEF LRF+ SP
Sbjct: 62 IYPEVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 119
Query: 213 ETDAKLAKRYIDHSFVLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIF 272
+ +AK+YID FVL+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIF
Sbjct: 120 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 179
Query: 273 YRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLS 332
YRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +++YH QL+
Sbjct: 180 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 239
Query: 333 YCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLF 392
YC+ QF+EKD L + V+ LLKYWP T+S KEVMFL ELEE+L+ +P EF + M PLF
Sbjct: 240 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 299
Query: 393 HQIGRCLSSSHFQVGSSLL 411
Q+ +C+SS HFQV L
Sbjct: 300 RQLAKCVSSPHFQVAERAL 318
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction
Length = 403
Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/316 (58%), Positives = 240/316 (75%), Gaps = 3/316 (0%)
Query: 97 PNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQ 155
P A+++ LF++KL CCV+FDF +DP +LK K++KR L E+V+Y++ E +
Sbjct: 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYP 60
Query: 156 EMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRFVASPETD 215
E+V M + N+FRTL PP N FD EE+EP+++ AWPHLQ+VYEF LRF+ SP+
Sbjct: 61 EVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQ 118
Query: 216 AKLAKRYIDHSFVLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRF 275
+AK+YID FVL+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIFYRF
Sbjct: 119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF 178
Query: 276 IFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCI 335
I+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +++YH QL+YC+
Sbjct: 179 IYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV 238
Query: 336 TQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQI 395
QF+EKD L + V+ LLKYWP T+S KEVMFL ELEE+L+ +P EF + M PLF Q+
Sbjct: 239 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQL 298
Query: 396 GRCLSSSHFQVGSSLL 411
+C+SS HFQV L
Sbjct: 299 AKCVSSPHFQVAERAL 314
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 388
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/312 (58%), Positives = 232/312 (74%), Gaps = 3/312 (0%)
Query: 101 KQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVK 159
++ LF++KL CCV+FDF +DP +LK K++KR L E V+Y++ E + E+V
Sbjct: 1 QEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEXVEYITHNRNVITEPIYPEVVH 60
Query: 160 MVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRFVASPETDAKLA 219
+ N FRTL PP N FD EE+EP+++ AWPHLQ+VYEF LRF+ SP+ +A
Sbjct: 61 XFAVNXFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIA 118
Query: 220 KRYIDHSFVLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFET 279
K+YID FVL+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIFYRFI+ET
Sbjct: 119 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYET 178
Query: 280 EKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFV 339
E HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +++YH QL+YC+ QF+
Sbjct: 179 EHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFL 238
Query: 340 EKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCL 399
EKD L + V+ LLKYWP T+S KEV FL ELEE+L+ +P EF + PLF Q+ +C+
Sbjct: 239 EKDSTLTEPVVXALLKYWPKTHSPKEVXFLNELEEILDVIEPSEFVKIXEPLFRQLAKCV 298
Query: 400 SSSHFQVGSSLL 411
SS HFQV L
Sbjct: 299 SSPHFQVAERAL 310
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 170 TSPPRENKVLEAFDLEEEEPSMDPAW 195
TS P ++EA E +P +DPAW
Sbjct: 792 TSQPCLGSIVEALSGSERDPGLDPAW 817
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 170 TSPPRENKVLEAFDLEEEEPSMDPAW 195
TS P ++EA E +P +DPAW
Sbjct: 792 TSQPCLGSIVEALSGSERDPGLDPAW 817
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,934,744
Number of Sequences: 62578
Number of extensions: 416558
Number of successful extensions: 848
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 7
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)