Query 015127
Match_columns 413
No_of_seqs 146 out of 268
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 07:10:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jak_A Serine/threonine-protei 100.0 1E-123 5E-128 944.8 32.8 324 87-412 36-360 (392)
2 3fga_B Serine/threonine-protei 100.0 2E-122 7E-127 938.8 33.4 314 97-412 1-315 (403)
3 2npp_B PP2A, B subunit, serine 100.0 5E-123 2E-127 954.9 24.3 324 87-412 24-348 (449)
4 2qk2_A LP04448P; mini spindles 90.7 6.3 0.00022 35.3 14.3 174 231-411 20-197 (242)
5 2qk1_A Protein STU2; STU2P, XM 89.7 7.4 0.00025 36.0 14.2 177 233-411 23-212 (249)
6 1ibr_B P95, importin beta-1 su 86.1 9.3 0.00032 36.4 12.8 103 303-411 83-195 (462)
7 1qgr_A Protein (importin beta 63.7 1.4E+02 0.0049 30.9 18.5 183 227-411 218-429 (876)
8 2bpt_A Importin beta-1 subunit 63.2 75 0.0026 33.0 12.9 43 368-411 576-619 (861)
9 1qgr_A Protein (importin beta 58.3 1.4E+02 0.0047 31.0 13.9 103 303-411 83-195 (876)
10 2bpt_A Importin beta-1 subunit 48.0 2.5E+02 0.0086 29.0 19.4 214 196-411 175-432 (861)
11 1u6g_C TIP120 protein, CAND1; 45.9 3.4E+02 0.012 29.9 18.1 240 127-406 19-271 (1230)
12 1ibr_B P95, importin beta-1 su 45.0 2E+02 0.0068 27.0 15.7 41 371-411 389-429 (462)
13 1oks_A RNA polymerase alpha su 41.2 17 0.00059 27.1 2.6 45 290-336 5-49 (56)
14 4fdd_A Transportin-1; heat rep 40.8 2.1E+02 0.0073 30.1 12.1 168 228-411 15-195 (852)
15 4fdd_A Transportin-1; heat rep 39.7 3.6E+02 0.012 28.4 15.8 213 194-409 436-689 (852)
16 2x19_B Importin-13; nuclear tr 39.3 3.8E+02 0.013 28.5 13.9 65 229-301 689-756 (963)
17 1u6g_C TIP120 protein, CAND1; 37.3 4.6E+02 0.016 28.9 15.0 176 228-411 8-196 (1230)
18 2vgl_B AP-2 complex subunit be 36.6 3.6E+02 0.012 27.4 12.9 171 226-411 353-524 (591)
19 3ibv_A Exportin-T; karyopherin 36.1 39 0.0013 37.6 5.7 81 228-318 704-785 (980)
20 2km4_A Regulator of TY1 transp 34.2 99 0.0034 26.3 6.8 74 337-410 27-109 (142)
21 2jdq_A Importin alpha-1 subuni 31.3 1.8E+02 0.006 27.4 8.8 81 219-299 100-181 (450)
22 4fu3_A Regulation of nuclear P 21.8 1.8E+02 0.006 24.0 6.1 74 335-408 26-105 (135)
No 1
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=1.4e-123 Score=944.76 Aligned_cols=324 Identities=57% Similarity=1.035 Sum_probs=300.8
Q ss_pred cccCCCCCCCChHHhHHHHHHHHhccCccccc-cCCCCCchhHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhc
Q 015127 87 YEALPSFKDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANL 165 (413)
Q Consensus 87 l~~LP~~~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~k~Ke~Kr~tL~ELvd~v~~~~~~lte~~~~~i~~Mis~Ni 165 (413)
+++||+|+|++++++++||++||++||++||| +||.+|+++||+||+||+||+||++++++++||++++++++||++||
T Consensus 36 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni 115 (392)
T 2jak_A 36 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM 115 (392)
T ss_dssp ------CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 46999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHHhcCCccCHHHHhccCCHHHHHHHhhccCCCChhHHHH
Q 015127 166 FRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDPREREY 245 (413)
Q Consensus 166 FR~lPp~~~~~~~~~~~d~eedep~~EpsWPHLqlVYelllrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~ 245 (413)
||++||..++++ .+||+|||||++||+|||||+||++|+||++|+++++++||+|||++||++|+++||||||||||+
T Consensus 116 FR~lPp~~~~~~--~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~ 193 (392)
T 2jak_A 116 FRTLPPSSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 193 (392)
T ss_dssp CSCCCC-----------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCCCCCCCCccc--ccCCccccccccccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHH
Confidence 999999876543 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCChHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHhccCCCCccc
Q 015127 246 LKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVA 325 (413)
Q Consensus 246 LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLEIlgSIInGFa~PLKeEHk~fl~rvLiPLHk~~~~~ 325 (413)
|||+||||||||+++|+|||++|||+|++||||+++|||||||||||||||||||+|||+||++||.||||||||+++++
T Consensus 194 LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~ 273 (392)
T 2jak_A 194 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS 273 (392)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhCCCcHHHHHHHhhhcCCCCCchhHHHhHHHHHHHHhcCChhhHHhhHHHHHHHHHHhhCCCchH
Q 015127 326 MYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQ 405 (413)
Q Consensus 326 ~Yh~qL~yCi~qFveKDp~L~~~vi~glLk~WP~tns~KEvlFL~EleeiLe~~~~~ef~~i~~pLF~~la~Cl~S~hfq 405 (413)
.||+||+|||+||++|||+|+++|++|||||||+|||+||||||+|||+||+.+++++|+++++|||+|||+|++|+|||
T Consensus 274 ~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfq 353 (392)
T 2jak_A 274 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQ 353 (392)
T ss_dssp GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhc
Q 015127 406 VGSSLLS 412 (413)
Q Consensus 406 VAErAL~ 412 (413)
||||||.
T Consensus 354 VAErAL~ 360 (392)
T 2jak_A 354 VAERALY 360 (392)
T ss_dssp HHHHHHG
T ss_pred HHHHHHH
Confidence 9999986
No 2
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=100.00 E-value=2.2e-122 Score=938.85 Aligned_cols=314 Identities=58% Similarity=1.059 Sum_probs=308.8
Q ss_pred ChHHhHHHHHHHHhccCccccc-cCCCCCchhHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhccccCCCCCCC
Q 015127 97 PNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPPRE 175 (413)
Q Consensus 97 ~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~k~Ke~Kr~tL~ELvd~v~~~~~~lte~~~~~i~~Mis~NiFR~lPp~~~~ 175 (413)
|++||++||++||++||++||| +||.+|+++|++||+||+||+|||+++++++||++|+++++||++||||++||+.++
T Consensus 1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~ 80 (403)
T 3fga_B 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNP 80 (403)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 5789999999999999999999 899999999999999999999999999999999999999999999999999998765
Q ss_pred CcccccCCCCCCCCCCCCCCchHHHHHHHHHHHhcCCccCHHHHhccCCHHHHHHHhhccCCCChhHHHHHHHHHHHHhh
Q 015127 176 NKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDPREREYLKTVLHRIYG 255 (413)
Q Consensus 176 ~~~~~~~d~eedep~~EpsWPHLqlVYelllrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LKtiLHrIY~ 255 (413)
++ .+||+|||||++||||||||+||++|+||++|+++++++||+|||++||++|+++||||||||||+|||+||||||
T Consensus 81 ~~--~~~d~eedep~~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~ 158 (403)
T 3fga_B 81 TG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYG 158 (403)
T ss_dssp CS--TTCCGGGCCCCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cc--ccCCccccccccccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence 43 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHhccCCCCccccchhHHHHHH
Q 015127 256 KFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCI 335 (413)
Q Consensus 256 Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLEIlgSIInGFa~PLKeEHk~fl~rvLiPLHk~~~~~~Yh~qL~yCi 335 (413)
||+++|+|||++|||+||+||||+++|||||||||||||||||||+|||+||++||.||||||||+++++.||+||+|||
T Consensus 159 kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv 238 (403)
T 3fga_B 159 KFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV 238 (403)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHhhhcCCCCCchhHHHhHHHHHHHHhcCChhhHHhhHHHHHHHHHHhhCCCchHHHhhhhc
Q 015127 336 TQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVGSSLLS 412 (413)
Q Consensus 336 ~qFveKDp~L~~~vi~glLk~WP~tns~KEvlFL~EleeiLe~~~~~ef~~i~~pLF~~la~Cl~S~hfqVAErAL~ 412 (413)
+||++|||+|++++++|||||||+|||+||||||+||++||+.++|++|+++++|||++||+|++|+|||||||||.
T Consensus 239 ~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~ 315 (403)
T 3fga_B 239 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALY 315 (403)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHG
T ss_pred HHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=5.3e-123 Score=954.87 Aligned_cols=324 Identities=57% Similarity=1.035 Sum_probs=305.5
Q ss_pred cccCCCCCCCChHHhHHHHHHHHhccCccccc-cCCCCCchhHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhc
Q 015127 87 YEALPSFKDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANL 165 (413)
Q Consensus 87 l~~LP~~~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~k~Ke~Kr~tL~ELvd~v~~~~~~lte~~~~~i~~Mis~Ni 165 (413)
+++||+|+|||++++++||++||++||++||| +||.+|+++||+||+||+||+||++++++++||++++++++||++||
T Consensus 24 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni 103 (449)
T 2npp_B 24 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM 103 (449)
T ss_dssp --------------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 45999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHHhcCCccCHHHHhccCCHHHHHHHhhccCCCChhHHHH
Q 015127 166 FRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDPREREY 245 (413)
Q Consensus 166 FR~lPp~~~~~~~~~~~d~eedep~~EpsWPHLqlVYelllrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~ 245 (413)
||++||+.++++ ..||+|||||++||+|||||+||++|+|||+||++++++||+|||++||++|+++||||||||||+
T Consensus 104 FR~lPp~~~~~~--~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~ 181 (449)
T 2npp_B 104 FRTLPPSSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 181 (449)
T ss_dssp CCCCCCCSSCCS--SSSCGGGCCCCCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHH
T ss_pred CCCCCCCCCccc--ccCCCccccccccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHH
Confidence 999999876543 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCChHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHhccCCCCccc
Q 015127 246 LKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVA 325 (413)
Q Consensus 246 LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLEIlgSIInGFa~PLKeEHk~fl~rvLiPLHk~~~~~ 325 (413)
||||||||||||+++|+|||++|||+||+||||+++||||+||||||||||||||+|||+||+.||.||||||||+++++
T Consensus 182 LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~ 261 (449)
T 2npp_B 182 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS 261 (449)
T ss_dssp HHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhCCCcHHHHHHHhhhcCCCCCchhHHHhHHHHHHHHhcCChhhHHhhHHHHHHHHHHhhCCCchH
Q 015127 326 MYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQ 405 (413)
Q Consensus 326 ~Yh~qL~yCi~qFveKDp~L~~~vi~glLk~WP~tns~KEvlFL~EleeiLe~~~~~ef~~i~~pLF~~la~Cl~S~hfq 405 (413)
.||+||+|||+||++|||+|+++|++|||||||+|||+||||||+|||+||+.++|++|+++++|||+|||+|++|+|||
T Consensus 262 ~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfq 341 (449)
T 2npp_B 262 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQ 341 (449)
T ss_dssp GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHH
T ss_pred HhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhc
Q 015127 406 VGSSLLS 412 (413)
Q Consensus 406 VAErAL~ 412 (413)
||||||.
T Consensus 342 VAErAL~ 348 (449)
T 2npp_B 342 VAERALY 348 (449)
T ss_dssp HHHHHHG
T ss_pred HHHHHHH
Confidence 9999985
No 4
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=90.70 E-value=6.3 Score=35.26 Aligned_cols=174 Identities=14% Similarity=0.063 Sum_probs=109.0
Q ss_pred HhhccCCCChhHHHHHHHHHHHHhhc---ccCChHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHhcccCCCCHHHH
Q 015127 231 LLDLFDSEDPREREYLKTVLHRIYGK---FMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEH 307 (413)
Q Consensus 231 Ll~lfdSeDpRERd~LKtiLHrIY~K---f~~~R~fIRk~Innif~~fiyEte~~nGIaELLEIlgSIInGFa~PLKeEH 307 (413)
+++.++|.|.+||...-.-|..+-.. +.. ....+ +-+.+.+.+-.+...+-...-+.++|.+.++....+.. |
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~-i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~ 95 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYGA-LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-Y 95 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHH-HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHHH-HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence 56667899999998866666666443 222 11222 22334444321222233456788888888877655544 4
Q ss_pred HHHHHHHHhccCCCCccccchhHHHHHHHHHHHhCCCcHHHHHHHhhhcCCCCCchhHHHhHHHHHHHHhcCChh-hHHh
Q 015127 308 KLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPG-EFQR 386 (413)
Q Consensus 308 k~fl~rvLiPLHk~~~~~~Yh~qL~yCi~qFveKDp~L~~~vi~glLk~WP~tns~KEvlFL~EleeiLe~~~~~-ef~~ 386 (413)
..-+...|+...+.+.- .-.+....++..+++.-+ ...++..++...--.|++=..--+.-|..++....|+ .+..
T Consensus 96 ~~~ilp~ll~~l~d~~~-~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKP-NVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHHHHHHHHHGGGCCCH-HHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 34445566666555442 344567777777776543 3566777777666556654555677788888877665 3666
Q ss_pred hHHHHHHHHHHhhCCCchHHHhhhh
Q 015127 387 CMVPLFHQIGRCLSSSHFQVGSSLL 411 (413)
Q Consensus 387 i~~pLF~~la~Cl~S~hfqVAErAL 411 (413)
.+..+...|..|++..+..|=++|.
T Consensus 173 ~l~~l~p~l~~~l~D~~~~VR~~A~ 197 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEPDPTVRDSSA 197 (242)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHH
Confidence 7778888899999999988877664
No 5
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=89.70 E-value=7.4 Score=35.97 Aligned_cols=177 Identities=7% Similarity=0.061 Sum_probs=116.3
Q ss_pred hccCCCChhHHHHHHHHHHH-Hh-h--cccCChHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHhcccC-CCCHHHH
Q 015127 233 DLFDSEDPREREYLKTVLHR-IY-G--KFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFA-LPLKEEH 307 (413)
Q Consensus 233 ~lfdSeDpRERd~LKtiLHr-IY-~--Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLEIlgSIInGFa-~PLKeEH 307 (413)
+.+.|.|.+||...-.-|.. +- | +.+.+..-.. .+-+.+...+-.+.+..-+..-+.++|.+.+|+. -....-|
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~-~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYS-NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 34478999999887777777 65 3 3431110001 1112333333222233335677899999999998 5665244
Q ss_pred HHHHHHHHhccCCCCccccchhHHHHHHHHHHHhC-C----CcHHHHHHHhhhcCCCCCchhHHHhHHHHHHHHhcCCh-
Q 015127 308 KLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKD-C----KLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQP- 381 (413)
Q Consensus 308 k~fl~rvLiPLHk~~~~~~Yh~qL~yCi~qFveKD-p----~L~~~vi~glLk~WP~tns~KEvlFL~EleeiLe~~~~- 381 (413)
..-+.-.|+..++-+. ..=-....+|+..+++.= | .-.+.++.-|+..+-..|++=....|.-|..+++....
T Consensus 102 ~~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 4445667777777765 233467888999998753 2 21446777777777666666666778888888887664
Q ss_pred -hhHHhhH-HHHHHHHHHhhCCCchHHHhhhh
Q 015127 382 -GEFQRCM-VPLFHQIGRCLSSSHFQVGSSLL 411 (413)
Q Consensus 382 -~ef~~i~-~pLF~~la~Cl~S~hfqVAErAL 411 (413)
..|...+ ..+...+.+|++-..-.|=++|.
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~ 212 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGF 212 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 7888888 89999999999998888877664
No 6
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=86.15 E-value=9.3 Score=36.38 Aligned_cols=103 Identities=8% Similarity=0.076 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHhC------CCcHHHHHHHhhhcCCCC--CchhHHHhHHHHHH
Q 015127 303 LKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKD------CKLADTVIRGLLKYWPVT--NSTKEVMFLGELEE 374 (413)
Q Consensus 303 LKeEHk~fl~rvLiPLHk~~~~~~Yh~qL~yCi~qFveKD------p~L~~~vi~glLk~WP~t--ns~KEvlFL~Elee 374 (413)
+.++.+..+...|+++-....-.. .+++.|+......| |.+...++..+- -. +...-..=+.-+..
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~v--~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~----~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 83 IDANARREVKNYVLQTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSSS--CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHhccccccHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHH
Confidence 567788888888888776655444 88999998886554 233333333321 12 22222234456666
Q ss_pred HHhcCChhhHHhhHHHHHHHHHHhhCCC--chHHHhhhh
Q 015127 375 VLESTQPGEFQRCMVPLFHQIGRCLSSS--HFQVGSSLL 411 (413)
Q Consensus 375 iLe~~~~~ef~~i~~pLF~~la~Cl~S~--hfqVAErAL 411 (413)
+.+...++.+......++..+..|+.+. +-.|-..|+
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~ 195 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAAT 195 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 7666666667777888999999999987 666665554
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=63.69 E-value=1.4e+02 Score=30.91 Aligned_cols=183 Identities=9% Similarity=0.051 Sum_probs=88.8
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHHhhcccC-ChHHHH-HHHHHHHhhhhhccccccCHHHHHHHHHHHhcccC----
Q 015127 227 FVLRLLDLFDSEDPREREYLKTVLHRIYGKFMV-HRPFIR-KAINNIFYRFIFETEKHNGIAELLEILGSIINGFA---- 300 (413)
Q Consensus 227 Fi~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~-~R~fIR-k~Innif~~fiyEte~~nGIaELLEIlgSIInGFa---- 300 (413)
++.-+.+...++|++-|...-..|.++...+.. .++++. ..+. ++...+- ++.-.-....++++..+.....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~-~~~~~~~-~~~~~v~~~al~~l~~l~~~~~~~~~ 295 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA-ITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAI 295 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHH-HHHHHHT-CSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHhc-CCchHHHHHHHHHHHHHHHHHHhHhh
Confidence 455556677888999898777777777664433 355666 3333 3322221 1111113345666666654210
Q ss_pred -------------CCCH---HHHHHHHHHHHhccCCCC------ccccchhHHHHHHHHHHHhCC-CcHHHHHHHhhhcC
Q 015127 301 -------------LPLK---EEHKLFLVRALIPLHKPK------CVAMYHQQLSYCITQFVEKDC-KLADTVIRGLLKYW 357 (413)
Q Consensus 301 -------------~PLK---eEHk~fl~rvLiPLHk~~------~~~~Yh~qL~yCi~qFveKDp-~L~~~vi~glLk~W 357 (413)
.+.. ..|..-+...++.+-... .-......-..|+....+..+ .+...++..+....
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l 375 (876)
T 1qgr_A 296 EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHI 375 (876)
T ss_dssp HHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHT
T ss_pred hhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHc
Confidence 0110 111111122222222110 000111122333333333222 23444554444433
Q ss_pred CCCCchhHHHhHHHHHHHHhcCChhhHHhhHHHHHHHHHHhhCCCchHHHhhhh
Q 015127 358 PVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVGSSLL 411 (413)
Q Consensus 358 P~tns~KEvlFL~EleeiLe~~~~~ef~~i~~pLF~~la~Cl~S~hfqVAErAL 411 (413)
--.+...-..-+.-+..+.+.+.++.+......+...+-.+++++|..|-++|+
T Consensus 376 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~ 429 (876)
T 1qgr_A 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429 (876)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 222222222233455666666666777777777888888999999999988775
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=63.18 E-value=75 Score=32.96 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=25.3
Q ss_pred hHHHHHHHHhcCChhhHHhhHHHHHHHHHHhhCCCch-HHHhhhh
Q 015127 368 FLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHF-QVGSSLL 411 (413)
Q Consensus 368 FL~EleeiLe~~~~~ef~~i~~pLF~~la~Cl~S~hf-qVAErAL 411 (413)
.+.=|..++..+.. ++......++..+...+++.+. .|-|.|+
T Consensus 576 ~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~ 619 (861)
T 2bpt_A 576 ILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVF 619 (861)
T ss_dssp HHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHH
T ss_pred HHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCCcHHHHHH
Confidence 44445555555543 5666666777777777776654 5555543
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=58.27 E-value=1.4e+02 Score=31.01 Aligned_cols=103 Identities=8% Similarity=0.073 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHhC------CCcHHHHHHHhhhcCCCC--CchhHHHhHHHHHH
Q 015127 303 LKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKD------CKLADTVIRGLLKYWPVT--NSTKEVMFLGELEE 374 (413)
Q Consensus 303 LKeEHk~fl~rvLiPLHk~~~~~~Yh~qL~yCi~qFveKD------p~L~~~vi~glLk~WP~t--ns~KEvlFL~Elee 374 (413)
+-++.+..+...|+.+-....-.. .++++|+......+ |.+...++..+- -. +..--..-|.-+..
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~--~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~----~~~~~~~~r~~al~~l~~ 156 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMKESTLEAIGY 156 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS--CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHHhhCcccccHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHH
Confidence 567777777777777665544334 78888888776543 233333322221 11 22112234566777
Q ss_pred HHhcCChhhHHhhHHHHHHHHHHhhCCC--chHHHhhhh
Q 015127 375 VLESTQPGEFQRCMVPLFHQIGRCLSSS--HFQVGSSLL 411 (413)
Q Consensus 375 iLe~~~~~ef~~i~~pLF~~la~Cl~S~--hfqVAErAL 411 (413)
+.+.+.++.|......++..+.+|+.+. +..|-..|+
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~ 195 (876)
T 1qgr_A 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAAT 195 (876)
T ss_dssp HHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHH
T ss_pred HHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 7777777788888888889999999886 666655554
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=47.99 E-value=2.5e+02 Score=28.95 Aligned_cols=214 Identities=12% Similarity=0.128 Sum_probs=106.8
Q ss_pred chHHHHHHHHHHHhcCCccCHHH-------Hhc---cCCH--------H-HHHHHhhccCCCChhHHHHHHHHHHHHhhc
Q 015127 196 PHLQVVYEFLLRFVASPETDAKL-------AKR---YIDH--------S-FVLRLLDLFDSEDPREREYLKTVLHRIYGK 256 (413)
Q Consensus 196 PHLqlVYelllrfv~s~~~d~~~-------ak~---~id~--------~-Fi~~Ll~lfdSeDpRERd~LKtiLHrIY~K 256 (413)
+|..-+...+...+.+++.++.+ ... +++. . ++.-|...+.++|++.|...-..|.+|..+
T Consensus 175 ~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 175 SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 57777778887777765323221 111 2221 2 344455567899999999887777777765
Q ss_pred ccC-ChHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHhcccC-----------CC-----CHHHHHHHHHHHHhccC
Q 015127 257 FMV-HRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFA-----------LP-----LKEEHKLFLVRALIPLH 319 (413)
Q Consensus 257 f~~-~R~fIRk~Innif~~fiyEte~~nGIaELLEIlgSIInGFa-----------~P-----LKeEHk~fl~rvLiPLH 319 (413)
+.. .++++.+.+-..+...+.. ....-....+++++++..... .| .-..+...+..+|+...
T Consensus 255 ~~~~~~~~l~~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l 333 (861)
T 2bpt_A 255 YYTFMKPYMEQALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL 333 (861)
T ss_dssp HGGGCHHHHHHTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 543 3456663333344444322 112223456777777764210 00 00111122233343332
Q ss_pred CCCc------cccchhHHHHHHHHHHHhCC-CcHHHHHHHhhhcCCCCCc-hhHHHhHHHHHHHHhcCChhhHHhhHHHH
Q 015127 320 KPKC------VAMYHQQLSYCITQFVEKDC-KLADTVIRGLLKYWPVTNS-TKEVMFLGELEEVLESTQPGEFQRCMVPL 391 (413)
Q Consensus 320 k~~~------~~~Yh~qL~yCi~qFveKDp-~L~~~vi~glLk~WP~tns-~KEvlFL~EleeiLe~~~~~ef~~i~~pL 391 (413)
+... -......-..|+..+...-+ .....++..+...---.+. .++. =+.-+..+.+.+.++.+...+..+
T Consensus 334 ~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~-a~~~l~~i~~~~~~~~~~~~l~~i 412 (861)
T 2bpt_A 334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREA-AVMAFGSIMDGPDKVQRTYYVHQA 412 (861)
T ss_dssp TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHH-HHHHHHHTSSSSCHHHHHHHHHHH
T ss_pred HhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHH-HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2210 00111122233333332221 2333444443322111121 2222 233456666666667787777888
Q ss_pred HHHHHHhhCCCchHHHhhhh
Q 015127 392 FHQIGRCLSSSHFQVGSSLL 411 (413)
Q Consensus 392 F~~la~Cl~S~hfqVAErAL 411 (413)
...|..++.++|-.|-++|+
T Consensus 413 l~~l~~~l~d~~~~vr~~a~ 432 (861)
T 2bpt_A 413 LPSILNLMNDQSLQVKETTA 432 (861)
T ss_dssp HHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHH
Confidence 88888889888888877664
No 11
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=45.88 E-value=3.4e+02 Score=29.93 Aligned_cols=240 Identities=13% Similarity=0.126 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHH
Q 015127 127 EKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLL 206 (413)
Q Consensus 127 ~Ke~Kr~tL~ELvd~v~~~~~~lte~~~~~i~~Mis~NiFR~lPp~~~~~~~~~~~d~eedep~~EpsWPHLqlVYelll 206 (413)
.++++++++.+|.+.+......+++.....++..+ ++.+. ++.|..-+.....+.
T Consensus 19 d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~L----l~~L~---------------------d~~~~vR~~A~~~L~ 73 (1230)
T 1u6g_C 19 DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMI----LKLLE---------------------DKNGEVQNLAVKCLG 73 (1230)
T ss_dssp SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHH----HHHTT---------------------CSSHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHH----HHHhc---------------------CCCHHHHHHHHHHHH
Confidence 46788999999999887765555554444444433 22221 235666666666666
Q ss_pred HHhcCCccCHHHHhccCCHHHHHHHhhccCCCChhHHHHHHHHHHHHhhcccCC-------hHHHHHHHHHHHhhhhhcc
Q 015127 207 RFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDPREREYLKTVLHRIYGKFMVH-------RPFIRKAINNIFYRFIFET 279 (413)
Q Consensus 207 rfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~-------R~fIRk~Innif~~fiyEt 279 (413)
.++..- .. .++ ...+..|+..+.+++++=|...-..|..|....... ..+.. .+-..+.+.+...
T Consensus 74 ~l~~~~--~~----~~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~-~llp~L~~~l~~~ 145 (1230)
T 1u6g_C 74 PLVSKV--KE----YQV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCK-KITGRLTSAIAKQ 145 (1230)
T ss_dssp HHHTTS--CH----HHH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHH-HHHHHHHHHHSCC
T ss_pred HHHHhC--CH----HHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHH-HHHHHHHHHHcCC
Confidence 655421 11 111 245667888888888888887777777666554432 11222 2223334443222
Q ss_pred ccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHhCC-----CcHHHHHHHhh
Q 015127 280 EKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDC-----KLADTVIRGLL 354 (413)
Q Consensus 280 e~~nGIaELLEIlgSIInGFa~PLKeEHk~fl~rvLiPLHk~~~~~~Yh~qL~yCi~qFveKDp-----~L~~~vi~glL 354 (413)
+...-....+++|+.+...+.-.+.+ |..-+...|+++-..+. ......-..|+..+++.-+ .+...++.+|.
T Consensus 146 ~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~-~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~ 223 (1230)
T 1u6g_C 146 EDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELS 223 (1230)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 22233466888888888544333333 22334455666554433 2345555667777765432 24455555554
Q ss_pred hc-CCCCCchhHHHhHHHHHHHHhcCChhhHHhhHHHHHHHHHHhhCCCchHH
Q 015127 355 KY-WPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQV 406 (413)
Q Consensus 355 k~-WP~tns~KEvlFL~EleeiLe~~~~~ef~~i~~pLF~~la~Cl~S~hfqV 406 (413)
.- |+. .-.+=+..|++| .+... ..|...+..++..+-+++...+-.|
T Consensus 224 ~~~~~~-~r~~a~~~l~~l---~~~~~-~~~~~~l~~l~~~ll~~l~d~~~~v 271 (1230)
T 1u6g_C 224 KNDSMS-TTRTYIQCIAAI---SRQAG-HRIGEYLEKIIPLVVKFCNVDDDEL 271 (1230)
T ss_dssp HTCSSC-SCTTHHHHHHHH---HHHSS-GGGTTSCTTHHHHHHHHHSSCCTTT
T ss_pred cCCchh-HHHHHHHHHHHH---HHHhH-HHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 42 211 111112334443 33332 2444444445555555555544433
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=45.02 E-value=2e+02 Score=26.96 Aligned_cols=41 Identities=10% Similarity=0.222 Sum_probs=29.3
Q ss_pred HHHHHHhcCChhhHHhhHHHHHHHHHHhhCCCchHHHhhhh
Q 015127 371 ELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVGSSLL 411 (413)
Q Consensus 371 EleeiLe~~~~~ef~~i~~pLF~~la~Cl~S~hfqVAErAL 411 (413)
=|..+.+.+.++.+...+..++..|..+++++|..|-.+|+
T Consensus 389 ~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~ 429 (462)
T 1ibr_B 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429 (462)
T ss_dssp HHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 34555555555556666667888889999999998877775
No 13
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=41.23 E-value=17 Score=27.12 Aligned_cols=45 Identities=29% Similarity=0.404 Sum_probs=36.3
Q ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHhccCCCCccccchhHHHHHHH
Q 015127 290 EILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCIT 336 (413)
Q Consensus 290 EIlgSIInGFa~PLKeEHk~fl~rvLiPLHk~~~~~~Yh~qL~yCi~ 336 (413)
+++.|||+. --|.++||.++...|=-.-..+.++.|||.|.-.|.
T Consensus 5 sViRSvikS--S~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~ 49 (56)
T 1oks_A 5 SVIRSIIKS--SRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIM 49 (56)
T ss_dssp HHHHHHHHH--SCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cccchHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 466777763 457899999999988888889999999998866554
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=40.82 E-value=2.1e+02 Score=30.14 Aligned_cols=168 Identities=15% Similarity=0.139 Sum_probs=90.4
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhhc--cccccCHHH-HHHHHHHHhcccCCCCH
Q 015127 228 VLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFE--TEKHNGIAE-LLEILGSIINGFALPLK 304 (413)
Q Consensus 228 i~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyE--te~~nGIaE-LLEIlgSIInGFa~PLK 304 (413)
+.++|...-|+|+..|......|..++. ...|. ..+. ++.. +.....+-. -.-.|...|+..-..+.
T Consensus 15 l~~~l~~~~s~d~~~r~~Ae~~L~~~~~----~p~~~-----~~l~-~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~ 84 (852)
T 4fdd_A 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQ----YPDFN-----NYLI-FVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFP 84 (852)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTT----SHHHH-----HHHH-HHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCC
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHh----CCCHH-----HHHH-HHHhccCCCChHHHHHHHHHHHHHHHHccCCCC
Confidence 5566666678999999999888877653 11111 1111 1111 111111100 00123333432224577
Q ss_pred HHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHhCC-----CcHHHHHHHhhhcCCCCCc-hhHHHhHHHHHHHHhc
Q 015127 305 EEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDC-----KLADTVIRGLLKYWPVTNS-TKEVMFLGELEEVLES 378 (413)
Q Consensus 305 eEHk~fl~rvLiPLHk~~~~~~Yh~qL~yCi~qFveKDp-----~L~~~vi~glLk~WP~tns-~KEvlFL~EleeiLe~ 378 (413)
++.+..+...|+.+-..+. ..-..+++.|+......|+ .|...++..+ --.+. .+|. -+.-|..+.+.
T Consensus 85 ~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l----~~~~~~~r~~-al~~L~~i~~~ 158 (852)
T 4fdd_A 85 NGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQNWPDLLPKLCSLL----DSEDYNTCEG-AFGALQKICED 158 (852)
T ss_dssp HHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHH----SCSSHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH----cCCCHHHHHH-HHHHHHHHHHH
Confidence 8999999999999866433 4567789999999888762 3333333322 22222 2232 23334444444
Q ss_pred CChh----hHHhhHHHHHHHHHHhhCCCchHHHhhhh
Q 015127 379 TQPG----EFQRCMVPLFHQIGRCLSSSHFQVGSSLL 411 (413)
Q Consensus 379 ~~~~----ef~~i~~pLF~~la~Cl~S~hfqVAErAL 411 (413)
..+. ........++..+.+|+.+++..|-..|+
T Consensus 159 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~ 195 (852)
T 4fdd_A 159 SAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAV 195 (852)
T ss_dssp HTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHH
T ss_pred hHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3322 11122445666677788888888766664
No 15
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=39.67 E-value=3.6e+02 Score=28.38 Aligned_cols=213 Identities=10% Similarity=0.127 Sum_probs=103.6
Q ss_pred CCchHHHHHHHHHHHhcCCccCHH----------------HHhccCCHHHHHHHhhccCCCChhHHHHHHHHHHHHh---
Q 015127 194 AWPHLQVVYEFLLRFVASPETDAK----------------LAKRYIDHSFVLRLLDLFDSEDPREREYLKTVLHRIY--- 254 (413)
Q Consensus 194 sWPHLqlVYelllrfv~s~~~d~~----------------~ak~~id~~Fi~~Ll~lfdSeDpRERd~LKtiLHrIY--- 254 (413)
.++++.-+...++..+.++....+ ....|+ ...+..|+..++..+.+....+-+.+..|.
T Consensus 436 ~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~ 514 (852)
T 4fdd_A 436 PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 514 (852)
T ss_dssp TTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 456676666766666654321100 012333 456666777777666666555445544443
Q ss_pred hcccCChHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHH---HHHh------------c-c
Q 015127 255 GKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLV---RALI------------P-L 318 (413)
Q Consensus 255 ~Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLEIlgSIInGFa~PLKeEHk~fl~---rvLi------------P-L 318 (413)
|+-+....++...+.-++..+-.-.+....+..++|++++|......-+.+.-...+. +.|- | .
T Consensus 515 ~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~ 594 (852)
T 4fdd_A 515 GHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ 594 (852)
T ss_dssp GGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred hhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 2323334566655544443322212222334467888888887543322221111111 1110 1 0
Q ss_pred CCCCccccchh---HHHHHHHHHHHhCCC--c-HHHHHHHhhhcCCCCCchhHHHhHHHHHHHHhcCChhhHHhhHHHHH
Q 015127 319 HKPKCVAMYHQ---QLSYCITQFVEKDCK--L-ADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLF 392 (413)
Q Consensus 319 Hk~~~~~~Yh~---qL~yCi~qFveKDp~--L-~~~vi~glLk~WP~tns~KEvlFL~EleeiLe~~~~~ef~~i~~pLF 392 (413)
...+.. .+.. .+.-.+.+-+..+-. + ...++..++..|.-.++.=......-+.++...+. ++|...+..+.
T Consensus 595 ~~~~d~-~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~l 672 (852)
T 4fdd_A 595 YEAPDK-DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFM 672 (852)
T ss_dssp SCCCCT-HHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHH
T ss_pred cCCCcc-hHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence 000000 1111 122222333332211 0 02346666666654433333345566677776665 67888888888
Q ss_pred HHHHHhhCCCchHHHhh
Q 015127 393 HQIGRCLSSSHFQVGSS 409 (413)
Q Consensus 393 ~~la~Cl~S~hfqVAEr 409 (413)
..+.++++...+.|-..
T Consensus 673 p~l~~~l~~~~~~v~~~ 689 (852)
T 4fdd_A 673 PILGTNLNPEFISVCNN 689 (852)
T ss_dssp HHHHHTCCTTSHHHHHH
T ss_pred HHHHHHcCccchHHHHH
Confidence 88889988877776443
No 16
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=39.32 E-value=3.8e+02 Score=28.53 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=38.0
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHH---hhcccCChHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHhcccCC
Q 015127 229 LRLLDLFDSEDPREREYLKTVLHRI---YGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFAL 301 (413)
Q Consensus 229 ~~Ll~lfdSeDpRERd~LKtiLHrI---Y~Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLEIlgSIInGFa~ 301 (413)
.++++.+. .|++.++.+-.+++++ ||.-+ .+|+-..+..++-.|- . .+++.+|.+++.++..|+.
T Consensus 689 ~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~--~~~l~~~~~~l~~~~~--~---~~~~~~l~l~~~li~~f~~ 756 (963)
T 2x19_B 689 QKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDF--APMVPQLCEMLGRMYS--T---IPQASALDLTRQLVHIFAH 756 (963)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTT--GGGHHHHHHHHHHHHH--H---SCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcc-CchHHHHHHHHHHHHHHHhhcccc--cccHHHHHHHHHHHHH--c---CCccHHHHHHHHHHHHhCC
Confidence 34455433 5667777777777774 44322 3555555444333322 1 2467899999999986544
No 17
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=37.26 E-value=4.6e+02 Score=28.92 Aligned_cols=176 Identities=11% Similarity=0.100 Sum_probs=79.3
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHhhc-ccCChHHHHHHHHHHHhhhhhccccccCH-HHHHHHHHHHhcccCCCCHH
Q 015127 228 VLRLLDLFDSEDPREREYLKTVLHRIYGK-FMVHRPFIRKAINNIFYRFIFETEKHNGI-AELLEILGSIINGFALPLKE 305 (413)
Q Consensus 228 i~~Ll~lfdSeDpRERd~LKtiLHrIY~K-f~~~R~fIRk~Innif~~fiyEte~~nGI-aELLEIlgSIInGFa~PLKe 305 (413)
+.+||+.+.|+|+..|-.--.-|...+.+ .....+-..+.+-..+.+.+-.. ...+ ..-...++.+..+.. +
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~--~~~vR~~A~~~L~~l~~~~~----~ 81 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK--NGEVQNLAVKCLGPLVSKVK----E 81 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHTTSC----H
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhCC----H
Confidence 56788888899998887654444443322 22222111222222333333211 1111 113445666666542 3
Q ss_pred HHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHhCCC----------cHHHHHHHhhhcCC-CCCchhHHHhHHHHHH
Q 015127 306 EHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCK----------LADTVIRGLLKYWP-VTNSTKEVMFLGELEE 374 (413)
Q Consensus 306 EHk~fl~rvLiPLHk~~~~~~Yh~qL~yCi~qFveKDp~----------L~~~vi~glLk~WP-~tns~KEvlFL~Elee 374 (413)
++...+...|+..-....-.. ...-..|+.++++.-+. ....++..|++.== ..+.....-=+.-+.+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~v-R~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQL-RDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHH-HHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 555555555555433332222 33345566666544332 12333333322110 0111111112222333
Q ss_pred HHhcCChhhHHhhHHHHHHHHHHhhCCCchHHHhhhh
Q 015127 375 VLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVGSSLL 411 (413)
Q Consensus 375 iLe~~~~~ef~~i~~pLF~~la~Cl~S~hfqVAErAL 411 (413)
+++.. +..+......+...+..++.+++..|-++|+
T Consensus 161 ~~~~~-~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~ 196 (1230)
T 1u6g_C 161 MLSRQ-GGLLVNFHPSILTCLLPQLTSPRLAVRKRTI 196 (1230)
T ss_dssp HHHHT-CSSCTTTHHHHHHHHGGGGGCSSHHHHHHHH
T ss_pred HHHHh-HhHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 33322 1223334456777777788888888877765
No 18
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=36.56 E-value=3.6e+02 Score=27.43 Aligned_cols=171 Identities=11% Similarity=0.078 Sum_probs=103.2
Q ss_pred HHHHHHhhccCCCChhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHhcccCCCCHH
Q 015127 226 SFVLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKE 305 (413)
Q Consensus 226 ~Fi~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLEIlgSIInGFa~PLKe 305 (413)
..+.+|++.+.+.|..-|..+-.-++++=.||...-.|+- +.+.+++-.. .-.-..|.+..++.|+.++. -+++
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v----~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p-~~~~ 426 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCV----STLLDLIQTK-VNYVVQEAIVVIRDIFRKYP-NKYE 426 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHTC-CHHHHHHHHHHHHHHHHHSC-SSCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHH----HHHHHHHccc-chHHHHHHHHHHHHHHHHCc-chHH
Confidence 3566788888888998888888888888888753323322 4555555322 11225677778888887653 2222
Q ss_pred HHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHhCCCcHHHHHHHhhhcCCCCCchhHHHhHHHHHHHHhcCChhhHH
Q 015127 306 EHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQ 385 (413)
Q Consensus 306 EHk~fl~rvLiPLHk~~~~~~Yh~qL~yCi~qFveKDp~L~~~vi~glLk~WP~tns~KEvlFL~EleeiLe~~~~~ef~ 385 (413)
.-...|...|-.+ ....-.....+++-+|.+.-+. ...+++.+++-+...++.=+...|.-+-.+....+. +-+
T Consensus 427 ~~v~~L~~~l~~~----~~~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~-~~~ 500 (591)
T 2vgl_B 427 SIIATLCENLDSL----DEPDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS-ETQ 500 (591)
T ss_dssp TTHHHHHHTTTTC----CSHHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS-TTH
T ss_pred HHHHHHHHHHHhc----cCHHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch-HHH
Confidence 2222233332111 1122356677888888665444 678899999888766555455566777777665432 223
Q ss_pred hhHHHHHHHHHHhh-CCCchHHHhhhh
Q 015127 386 RCMVPLFHQIGRCL-SSSHFQVGSSLL 411 (413)
Q Consensus 386 ~i~~pLF~~la~Cl-~S~hfqVAErAL 411 (413)
..+..+ +.+|. .|.+..|=+||.
T Consensus 501 ~~i~~l---l~~~~~d~~d~evrdRA~ 524 (591)
T 2vgl_B 501 ELVQQV---LSLATQDSDNPDLRDRGY 524 (591)
T ss_dssp HHHHHH---HHHHHTTCCCHHHHHHHH
T ss_pred HHHHHH---HHHhhhcCCChHHHHHHH
Confidence 333333 34554 568999999985
No 19
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=36.09 E-value=39 Score=37.60 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=53.9
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHhhcccC-ChHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHhcccCCCCHHH
Q 015127 228 VLRLLDLFDSEDPREREYLKTVLHRIYGKFMV-HRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEE 306 (413)
Q Consensus 228 i~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~-~R~fIRk~Innif~~fiyEte~~nGIaELLEIlgSIInGFa~PLKeE 306 (413)
+++.++.|. .|.+=|+.....+||+...+.. .-|++-+.|..+.- .-...+.++.|.++|.||..|.- |
T Consensus 704 il~~l~~~~-~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~-----~~~~~e~~~fL~l~~qli~~f~~----~ 773 (980)
T 3ibv_A 704 IFLILDRMG-FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLN-----SIDMNELVDVLSFISQLIHIYKD----N 773 (980)
T ss_dssp HHHHHHHSC-CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHH-----HCCTTTHHHHHHHHHHHHHHTTT----T
T ss_pred HHHHHHhcC-CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHHH----H
Confidence 444556554 5567777789999999886644 44666666655552 12356789999999999999943 3
Q ss_pred HHHHHHHHHhcc
Q 015127 307 HKLFLVRALIPL 318 (413)
Q Consensus 307 Hk~fl~rvLiPL 318 (413)
+..+|...|-||
T Consensus 774 ~~~~l~~ll~~l 785 (980)
T 3ibv_A 774 MMEITNRMLPTL 785 (980)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
No 20
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=34.20 E-value=99 Score=26.32 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=47.9
Q ss_pred HHHHhCCCcHHHHHHHhhhcCCC--CCchhHHHhHHHHHHHHhcCC-------hhhHHhhHHHHHHHHHHhhCCCchHHH
Q 015127 337 QFVEKDCKLADTVIRGLLKYWPV--TNSTKEVMFLGELEEVLESTQ-------PGEFQRCMVPLFHQIGRCLSSSHFQVG 407 (413)
Q Consensus 337 qFveKDp~L~~~vi~glLk~WP~--tns~KEvlFL~EleeiLe~~~-------~~ef~~i~~pLF~~la~Cl~S~hfqVA 407 (413)
+|+-....-+..++..+.++==. +++.|-+-+|.-+++|+..+- -..|.+++.++|..+....++.+-+..
T Consensus 27 ~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~~~~~~~~~~~kv 106 (142)
T 2km4_A 27 KWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKKL 106 (142)
T ss_dssp HHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34334444444444444444433 366888999999999997543 247899999999998876655555555
Q ss_pred hhh
Q 015127 408 SSL 410 (413)
Q Consensus 408 ErA 410 (413)
+|-
T Consensus 107 ~rv 109 (142)
T 2km4_A 107 SRV 109 (142)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=31.28 E-value=1.8e+02 Score=27.39 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=49.6
Q ss_pred HhccCCHHHHHHHhhccCCCChhHHHHHHHHHHHHhhcccCChHHHH-HHHHHHHhhhhhccccccCHHHHHHHHHHHhc
Q 015127 219 AKRYIDHSFVLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIR-KAINNIFYRFIFETEKHNGIAELLEILGSIIN 297 (413)
Q Consensus 219 ak~~id~~Fi~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIR-k~Innif~~fiyEte~~nGIaELLEIlgSIIn 297 (413)
.+..++...+-.|+.++.++|+.-|...-..|..|-......|..+. ..+-..+.+++-.+....-....++.|+.+..
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 34445556788899999999999999988888888765444444322 22234455555322222223445667777775
Q ss_pred cc
Q 015127 298 GF 299 (413)
Q Consensus 298 GF 299 (413)
+-
T Consensus 180 ~~ 181 (450)
T 2jdq_A 180 GK 181 (450)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 22
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=21.77 E-value=1.8e+02 Score=24.00 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=48.2
Q ss_pred HHHHHHhCCCcHHHHHHHhhhcCCCCCchhHHHhHHHHHHHHhcCC------hhhHHhhHHHHHHHHHHhhCCCchHHHh
Q 015127 335 ITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQ------PGEFQRCMVPLFHQIGRCLSSSHFQVGS 408 (413)
Q Consensus 335 i~qFveKDp~L~~~vi~glLk~WP~tns~KEvlFL~EleeiLe~~~------~~ef~~i~~pLF~~la~Cl~S~hfqVAE 408 (413)
+++|+-...+-++.++..+.++=-.+.+.+-+-+|.-+.+|+..+. ...|++++.++|..+.+.....+-+...
T Consensus 26 ~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~ 105 (135)
T 4fu3_A 26 LSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLE 105 (135)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444455555555555555555666777889999999986542 2568889999998887766555444333
Done!