RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015128
(413 letters)
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 165 bits (417), Expect = 1e-48
Identities = 81/319 (25%), Positives = 131/319 (41%), Gaps = 37/319 (11%)
Query: 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEG 149
Y GKGGVGKTS + + A++ A G L+VSTDPA ++ F+Q + G +
Sbjct: 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTI--GNTIQAIA 66
Query: 150 PDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPP 209
L ALEI+P+ A +++R +K + + + +L T
Sbjct: 67 SVPGLSALEIDPQAAAQQYR----ARIVDPIKGVLPDDVVSSI-----NEQLSGACTTEI 117
Query: 210 PGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLREK 269
DE ++ + F I+FDTAPTGHT+RLL LP + I +
Sbjct: 118 AAFDEFTG-----LLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASC 172
Query: 270 IASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSE 329
+ G LE+ RE+ E D T V+V + E
Sbjct: 173 L------------------GPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQE 214
Query: 330 SSRLSESLKKENVPVKRLIVNQIIPPS-ASDCKFCAMKRKDQMRALEMIKSDSELSSLML 388
+R L + + L++N ++P + A++ A + + AL + ++L+ L
Sbjct: 215 VARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLP--ADLAGLPT 272
Query: 389 IEAPLVDVEIRGVPALRFM 407
L V + GV AL +
Sbjct: 273 DTLFLQPVNMVGVSALSRL 291
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 146 bits (369), Expect = 9e-42
Identities = 70/335 (20%), Positives = 124/335 (37%), Gaps = 64/335 (19%)
Query: 75 EAVSGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDS 134
++S + +A + ML GKGGVGKT+ AA++AV+ A+ G + ++DPA LS +
Sbjct: 6 PSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMT 65
Query: 135 FAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVE 194
G L I+P + E +R + G +D G +L E
Sbjct: 66 L------------NGSLNNLQVSRIDPHEETERYRQHVLETKGKE----LDEAGKRLLEE 109
Query: 195 QLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRLLSLPD 254
D P +E + + V DTAPTGHTL LL
Sbjct: 110 -----------DLRSPCTEEIAVFQAFSRVIREAGKRFV---VMDTAPTGHTLLLLDATG 155
Query: 255 FLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDST 314
I K + + + L +D + T
Sbjct: 156 AYHREIAKKMGEKGHFTT-------------------------------PMMLLQDPERT 184
Query: 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRAL 374
+ ++VT+P V E++ L L++ + I+N + + + M+ + ++ +
Sbjct: 185 KVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQI 244
Query: 375 EMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGD 409
E +K + + P++ E G+ L+ +
Sbjct: 245 ESVK---RQHASRVALVPVLASEPTGIDKLKQLAG 276
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 232
Score = 49.8 bits (117), Expect = 1e-07
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 95 GGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSF 135
GKGG GKT+ A+L V A GH +V D + +
Sbjct: 8 SGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELI 48
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 48.5 bits (114), Expect = 4e-07
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 94 LGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
+ GKGG GKT+ A+L+V + G L V D
Sbjct: 8 VSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 48.4 bits (114), Expect = 6e-07
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSD 133
GKGG+GK++ +L G +VV DP +
Sbjct: 8 GKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTR 45
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 46.4 bits (109), Expect = 2e-06
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSD 133
GKGG+GK++ +L A G ++V DP +
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTR 46
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 38.2 bits (88), Expect = 9e-04
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPV 147
+ + ++ G GVGKT+ A L + N G + + D + + + +PV
Sbjct: 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPV 64
Query: 148 ----EGPDFPLFALEINPEKAREEFRNV 171
EG D A + + + ++
Sbjct: 65 IQGPEGTDPAALAYD-AVQAMKARGYDL 91
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 36.2 bits (83), Expect = 0.003
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLS 132
R + L G G GKT+ AA LA+ + G L+V+ D +
Sbjct: 9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA 53
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 35.4 bits (80), Expect = 0.008
Identities = 10/57 (17%), Positives = 20/57 (35%)
Query: 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLV 145
++Y++ G VGKT + +L G+ T + S + +
Sbjct: 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALAL 58
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 33.5 bits (75), Expect = 0.031
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 4/98 (4%)
Query: 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEG 149
K ++ G GVGK++ A + N G +++ L+ + + E
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY-GDFMLATALKLGYAKDR---DEM 57
Query: 150 PDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGM 187
+ + A + + G + +
Sbjct: 58 RKLSVEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAV 95
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 33.2 bits (75), Expect = 0.032
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPV 147
ML G G GK + A LA + G +V D + Q GQ + V
Sbjct: 16 MLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYR--PAALEQLQQLGQQIGV 68
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 33.4 bits (75), Expect = 0.033
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
++ G GKT + L G PT +
Sbjct: 6 VMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 39
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 33.1 bits (75), Expect = 0.040
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA---QDLTGGQLVPVEG 149
++ G GVGKT+ LA +F G ++ + D + + ++
Sbjct: 13 LMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT 72
Query: 150 PDFPLFALEINPEKAREEFRNV 171
+ + A+ +V
Sbjct: 73 GADSASVIFDAIQAAKARNIDV 94
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 32.7 bits (73), Expect = 0.043
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
++ L G GVGKT+ + ++G P T+
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEE 39
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 31.6 bits (71), Expect = 0.12
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130
M+ G G GKT+ LA F + G ++ + D +
Sbjct: 15 MVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA 52
>d1cbha_ g.3.8.1 (A:) Cellobiohydrolase I {Trichoderma reesei,
ct-cbh I [TaxId: 51453]}
Length = 36
Score = 28.1 bits (63), Expect = 0.17
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 87 TQRKYYMLGGKGGVGKTSCAASLAVKFAN 115
TQ Y GG G G T CA+ + N
Sbjct: 1 TQSHYGQCGGIGYSGPTVCASGTTCQVLN 29
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 30.7 bits (68), Expect = 0.19
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
K ++ G GVG T+ + G +VS
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 38
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 29.6 bits (65), Expect = 0.65
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 78 SGFDEMVAGTQR-KYYMLGGKGGVGKTSCAASLAV-KFANNGHPTLVVSTDPAH 129
+G ++ G + + M+ G+GK++ A+ G + + +
Sbjct: 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESV 76
>d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 94
Score = 27.6 bits (61), Expect = 1.0
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 7/63 (11%)
Query: 254 DFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVK-------VRE 306
D +D I + L R A S K+ + + L + V
Sbjct: 18 DRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPERARWAEENGLDAPFVEG 77
Query: 307 LFR 309
LF
Sbjct: 78 LFA 80
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 28.4 bits (62), Expect = 1.2
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125
++K ++G G GKT L + + + P + V T
Sbjct: 2 RKKLVIVG-DGACGKT----CLLIVNSKDQFPEVYVPT 34
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.8 bits (63), Expect = 1.2
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 81 DEMVAGTQRKY-YMLGGKGGVGKTSCAASLAVKFANNGH 118
D ++ L GG GK+ A LA + A
Sbjct: 20 DYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPD 58
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 28.7 bits (63), Expect = 1.5
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 94 LGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136
+ G G GK++ + + G V++ DP+ ++
Sbjct: 59 VTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSI 101
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 28.1 bits (61), Expect = 1.7
Identities = 10/50 (20%), Positives = 12/50 (24%), Gaps = 2/50 (4%)
Query: 77 VSGFDEMVAGTQRKY--YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124
S D ++ G G G GKT V N
Sbjct: 20 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEE 69
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.0 bits (61), Expect = 2.0
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 77 VSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGH 118
+ GFD++ G + ++ G G GKT +
Sbjct: 12 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD 55
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 27.8 bits (60), Expect = 2.1
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 77 VSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGH 118
D+++ G + G+ GKT +LAV
Sbjct: 9 SKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPID 52
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 27.4 bits (59), Expect = 2.8
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129
G GVGKT SL ++ N +T A
Sbjct: 9 GDSGVGKT----SLMNQYVNKKFSNQYKATIGAD 38
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 27.7 bits (61), Expect = 3.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 99 GVGKTSCAASLAVKFANNGHPTLVV 123
G+GKT+ A FA + L++
Sbjct: 15 GIGKTTAAEEFLHHFAITPNRILLI 39
>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase
MurC {Haemophilus influenzae [TaxId: 727]}
Length = 215
Score = 27.1 bits (59), Expect = 3.7
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 82 EMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTG 141
+M+A R + + G GKT+ A +++ + V+ S + L
Sbjct: 3 QMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNA--HLGA 60
Query: 142 GQLVPVEGPDFPLFALEINPEKA 164
+ + E + L + P +
Sbjct: 61 SRYLIAEADESDASFLHLQPMVS 83
>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 26.8 bits (59), Expect = 3.8
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 283 QEQNRQGASDKLERL--RERMVKVR---ELFRDTDSTEFVIVTIPTVMAVSESSRLSESL 337
+++N Q + + R + +VR E + D + ++ + V RL S+
Sbjct: 113 KDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSI 172
Query: 338 KK 339
++
Sbjct: 173 RR 174
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 27.2 bits (59), Expect = 4.0
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 94 LGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSF 135
+ G GVGK++ +L GH V++ DP+ + +
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGS 97
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 26.8 bits (59), Expect = 4.2
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDS 134
G G G ++ + F G + + D H + +
Sbjct: 11 GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRA 49
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 27.0 bits (58), Expect = 4.2
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 92 YMLGGKGGVGKTSCAASLAVKFANNGHPT 120
Y G+ G+GKT+ A + +
Sbjct: 49 YGSIGRVGIGKTTLAKFTVKRVSEAAAKE 77
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.1 bits (56), Expect = 6.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGH 118
+K Y++ G GVGK++ LA + N+ +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAY 31
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 25.6 bits (55), Expect = 8.8
Identities = 6/38 (15%), Positives = 7/38 (18%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSD 133
G GKT+ G V
Sbjct: 8 GYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPA 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.368
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,431,759
Number of extensions: 65548
Number of successful extensions: 291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 40
Length of query: 413
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,199,356
Effective search space: 389790700
Effective search space used: 389790700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)