Query 015129
Match_columns 413
No_of_seqs 195 out of 2289
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 03:23:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328 Predicted ATP-dependen 100.0 1.5E-65 3.3E-70 419.6 30.4 378 36-413 23-400 (400)
2 KOG0330 ATP-dependent RNA heli 100.0 1E-64 2.3E-69 432.4 31.7 374 35-409 56-432 (476)
3 KOG0331 ATP-dependent RNA heli 100.0 5.3E-63 1.1E-67 449.3 37.1 371 41-412 92-474 (519)
4 PTZ00110 helicase; Provisional 100.0 3.5E-61 7.6E-66 461.1 42.6 378 34-412 124-510 (545)
5 PRK04837 ATP-dependent RNA hel 100.0 3.4E-61 7.3E-66 452.5 40.9 371 39-410 7-386 (423)
6 PRK11776 ATP-dependent RNA hel 100.0 2.6E-60 5.6E-65 451.3 42.5 363 40-404 4-367 (460)
7 PRK10590 ATP-dependent RNA hel 100.0 2.8E-60 6.1E-65 448.8 41.9 363 41-404 2-370 (456)
8 COG0513 SrmB Superfamily II DN 100.0 2.6E-60 5.6E-65 450.7 41.4 369 35-403 24-398 (513)
9 PTZ00424 helicase 45; Provisio 100.0 6.1E-60 1.3E-64 443.5 42.9 384 30-413 18-401 (401)
10 PLN00206 DEAD-box ATP-dependen 100.0 7.3E-60 1.6E-64 451.0 43.2 375 35-411 116-500 (518)
11 PRK11634 ATP-dependent RNA hel 100.0 1E-59 2.2E-64 454.6 42.1 367 39-406 5-372 (629)
12 PRK11192 ATP-dependent RNA hel 100.0 1.9E-59 4.1E-64 442.8 43.0 364 41-404 2-370 (434)
13 PRK04537 ATP-dependent RNA hel 100.0 3.7E-59 8.1E-64 448.4 41.4 364 41-405 10-383 (572)
14 PRK01297 ATP-dependent RNA hel 100.0 1.1E-57 2.5E-62 434.1 44.7 365 37-402 84-458 (475)
15 KOG0333 U5 snRNP-like RNA heli 100.0 6E-58 1.3E-62 404.7 33.8 364 35-399 240-637 (673)
16 KOG0338 ATP-dependent RNA heli 100.0 4E-58 8.6E-63 404.4 28.3 360 39-398 180-545 (691)
17 KOG0326 ATP-dependent RNA heli 100.0 3.4E-58 7.5E-63 382.7 21.5 371 38-410 83-453 (459)
18 KOG0342 ATP-dependent RNA heli 100.0 4.1E-56 8.9E-61 390.9 31.9 358 37-395 79-446 (543)
19 KOG0345 ATP-dependent RNA heli 100.0 9.3E-56 2E-60 386.2 33.8 349 41-390 5-368 (567)
20 KOG0340 ATP-dependent RNA heli 100.0 4.8E-56 1E-60 375.0 29.9 369 38-407 5-382 (442)
21 KOG0335 ATP-dependent RNA heli 100.0 2.4E-55 5.2E-60 392.4 29.3 374 37-411 71-469 (482)
22 KOG0343 RNA Helicase [RNA proc 100.0 6.3E-55 1.4E-59 387.7 31.4 368 38-408 67-444 (758)
23 KOG0327 Translation initiation 100.0 3.7E-55 8E-60 374.8 28.5 383 28-413 14-397 (397)
24 KOG0336 ATP-dependent RNA heli 100.0 1.1E-54 2.4E-59 373.2 28.5 373 37-411 216-597 (629)
25 KOG0346 RNA helicase [RNA proc 100.0 4.7E-54 1E-58 372.4 29.1 362 40-402 19-426 (569)
26 KOG0339 ATP-dependent RNA heli 100.0 6.3E-53 1.4E-57 371.4 33.0 381 32-412 215-601 (731)
27 KOG0348 ATP-dependent RNA heli 100.0 5.4E-53 1.2E-57 374.1 30.8 359 39-398 135-566 (708)
28 TIGR03817 DECH_helic helicase/ 100.0 2.8E-51 6.1E-56 403.5 35.8 352 46-406 20-408 (742)
29 KOG0341 DEAD-box protein abstr 100.0 2.3E-53 4.9E-58 362.8 17.7 376 35-412 165-555 (610)
30 KOG0332 ATP-dependent RNA heli 100.0 1.2E-51 2.7E-56 350.4 27.0 367 38-407 88-465 (477)
31 KOG0334 RNA helicase [RNA proc 100.0 8.8E-50 1.9E-54 381.3 29.5 378 33-410 358-744 (997)
32 KOG0347 RNA helicase [RNA proc 100.0 5.9E-50 1.3E-54 355.9 21.6 366 35-402 176-586 (731)
33 TIGR00614 recQ_fam ATP-depende 100.0 2.6E-48 5.6E-53 368.4 34.2 324 57-396 6-343 (470)
34 PLN03137 ATP-dependent DNA hel 100.0 1.6E-47 3.5E-52 374.9 38.1 337 45-395 442-796 (1195)
35 KOG4284 DEAD box protein [Tran 100.0 7.8E-49 1.7E-53 354.7 26.0 366 38-404 23-402 (980)
36 KOG0350 DEAD-box ATP-dependent 100.0 4.9E-48 1.1E-52 340.2 27.0 361 39-400 126-554 (620)
37 PRK11057 ATP-dependent DNA hel 100.0 1.1E-46 2.5E-51 366.0 37.5 332 46-394 8-351 (607)
38 KOG0337 ATP-dependent RNA heli 100.0 4.8E-48 1E-52 333.4 21.8 367 39-406 20-388 (529)
39 PRK02362 ski2-like helicase; P 100.0 7.5E-47 1.6E-51 376.4 33.8 357 41-409 2-419 (737)
40 PRK13767 ATP-dependent helicas 100.0 7.7E-46 1.7E-50 372.2 36.5 334 47-386 18-398 (876)
41 TIGR01389 recQ ATP-dependent D 100.0 5.8E-46 1.2E-50 362.5 34.2 326 54-394 4-339 (591)
42 COG1201 Lhr Lhr-like helicases 100.0 1E-45 2.2E-50 355.2 32.1 362 46-412 7-392 (814)
43 PRK00254 ski2-like helicase; P 100.0 1.2E-45 2.5E-50 367.0 32.9 345 41-401 2-401 (720)
44 KOG0344 ATP-dependent RNA heli 100.0 2.1E-46 4.6E-51 337.3 24.6 375 36-410 128-519 (593)
45 PRK01172 ski2-like helicase; P 100.0 2.2E-44 4.8E-49 356.5 31.2 349 41-406 2-396 (674)
46 TIGR00580 mfd transcription-re 100.0 5.3E-43 1.2E-47 348.0 37.6 333 46-397 435-787 (926)
47 PRK10917 ATP-dependent DNA hel 100.0 4.1E-42 8.9E-47 337.5 37.6 317 51-385 251-588 (681)
48 PRK10689 transcription-repair 100.0 4.4E-42 9.6E-47 348.5 38.3 319 49-386 588-919 (1147)
49 COG0514 RecQ Superfamily II DN 100.0 1.4E-42 3E-47 322.1 29.9 332 53-398 7-349 (590)
50 COG1111 MPH1 ERCC4-like helica 100.0 1E-41 2.2E-46 302.7 32.1 322 59-386 12-481 (542)
51 TIGR00643 recG ATP-dependent D 100.0 3.3E-41 7E-46 329.3 35.9 317 49-384 223-564 (630)
52 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.3E-41 7.2E-46 325.9 34.2 312 58-383 12-388 (844)
53 PRK09751 putative ATP-dependen 100.0 5.5E-41 1.2E-45 342.3 33.5 321 82-405 1-406 (1490)
54 COG1202 Superfamily II helicas 100.0 7.1E-42 1.5E-46 306.3 21.1 339 39-386 193-553 (830)
55 PHA02558 uvsW UvsW helicase; P 100.0 7.2E-40 1.6E-44 312.2 27.7 300 61-377 113-443 (501)
56 COG1204 Superfamily II helicas 100.0 4.1E-40 8.9E-45 320.9 26.1 332 45-383 14-405 (766)
57 KOG0329 ATP-dependent RNA heli 100.0 6E-40 1.3E-44 265.6 17.2 334 39-408 41-378 (387)
58 PRK09401 reverse gyrase; Revie 100.0 4.9E-38 1.1E-42 319.8 35.5 288 53-358 71-410 (1176)
59 PHA02653 RNA helicase NPH-II; 100.0 2.1E-38 4.5E-43 305.0 29.7 314 65-395 167-523 (675)
60 COG1205 Distinct helicase fami 100.0 9.7E-38 2.1E-42 308.6 31.7 349 48-399 56-437 (851)
61 KOG0354 DEAD-box like helicase 100.0 3.1E-38 6.7E-43 296.5 26.3 326 59-390 59-533 (746)
62 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.7E-37 3.6E-42 305.8 32.7 305 68-390 8-340 (819)
63 PRK11664 ATP-dependent RNA hel 100.0 1.9E-37 4E-42 306.2 29.6 304 68-389 11-342 (812)
64 PRK13766 Hef nuclease; Provisi 100.0 1.3E-36 2.8E-41 306.9 35.8 324 59-387 12-480 (773)
65 TIGR01587 cas3_core CRISPR-ass 100.0 6.2E-38 1.4E-42 289.6 23.9 301 79-388 1-338 (358)
66 TIGR00603 rad25 DNA repair hel 100.0 2.3E-37 5E-42 296.4 26.8 317 61-399 254-622 (732)
67 PRK14701 reverse gyrase; Provi 100.0 1.6E-36 3.6E-41 314.9 30.7 325 50-390 67-460 (1638)
68 KOG0952 DNA/RNA helicase MER3/ 100.0 7.4E-37 1.6E-41 291.0 25.0 325 57-389 105-494 (1230)
69 TIGR01054 rgy reverse gyrase. 100.0 2.4E-35 5.2E-40 300.7 34.5 290 51-357 67-408 (1171)
70 PRK12898 secA preprotein trans 100.0 1.9E-35 4.1E-40 280.1 29.8 318 58-388 100-588 (656)
71 TIGR03714 secA2 accessory Sec 100.0 1.8E-35 3.8E-40 283.5 29.7 317 63-388 69-539 (762)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 4.1E-35 9E-40 267.5 30.3 289 66-371 1-357 (357)
73 KOG0351 ATP-dependent DNA heli 100.0 3.3E-35 7.3E-40 288.5 29.5 331 54-396 256-602 (941)
74 PRK09200 preprotein translocas 100.0 4.2E-35 9.2E-40 283.6 28.7 318 58-388 75-543 (790)
75 TIGR00963 secA preprotein tran 100.0 1.2E-34 2.6E-39 276.0 28.2 320 58-390 53-521 (745)
76 COG1200 RecG RecG-like helicas 100.0 5.4E-34 1.2E-38 264.2 31.2 325 45-387 245-592 (677)
77 KOG0352 ATP-dependent DNA heli 100.0 1.3E-34 2.9E-39 251.0 21.3 328 50-394 6-370 (641)
78 COG1061 SSL2 DNA or RNA helica 100.0 3.5E-34 7.6E-39 267.7 25.1 292 61-372 35-375 (442)
79 KOG0349 Putative DEAD-box RNA 100.0 2.9E-34 6.4E-39 249.3 21.7 281 108-388 286-617 (725)
80 PRK04914 ATP-dependent helicas 100.0 2.2E-33 4.7E-38 278.4 29.7 334 62-400 152-617 (956)
81 KOG0353 ATP-dependent DNA heli 100.0 1.7E-33 3.6E-38 241.1 24.1 348 31-390 60-471 (695)
82 COG1197 Mfd Transcription-repa 100.0 4.7E-32 1E-36 265.0 32.0 332 46-396 578-929 (1139)
83 PRK05580 primosome assembly pr 100.0 2.5E-31 5.4E-36 260.4 31.9 315 62-394 144-557 (679)
84 PRK11131 ATP-dependent RNA hel 100.0 3.5E-31 7.6E-36 266.3 30.4 301 66-389 78-414 (1294)
85 PRK09694 helicase Cas3; Provis 100.0 1.3E-30 2.9E-35 257.1 33.4 311 60-375 284-664 (878)
86 cd00268 DEADc DEAD-box helicas 100.0 3.3E-31 7.1E-36 225.1 24.0 200 42-241 1-202 (203)
87 KOG0947 Cytoplasmic exosomal R 100.0 3.4E-31 7.4E-36 250.0 23.2 312 57-385 293-722 (1248)
88 TIGR00595 priA primosomal prot 100.0 1.5E-30 3.1E-35 246.2 27.3 293 81-391 1-386 (505)
89 KOG0951 RNA helicase BRR2, DEA 100.0 5.2E-31 1.1E-35 254.6 23.9 330 58-392 305-708 (1674)
90 PRK11448 hsdR type I restricti 100.0 4E-30 8.8E-35 260.7 28.4 304 61-375 412-802 (1123)
91 TIGR01967 DEAH_box_HrpA ATP-de 100.0 8.9E-30 1.9E-34 257.2 30.0 304 68-390 73-408 (1283)
92 PLN03142 Probable chromatin-re 100.0 3.7E-29 8E-34 249.2 30.2 330 62-399 169-614 (1033)
93 COG4098 comFA Superfamily II D 100.0 1E-28 2.2E-33 209.1 27.6 309 62-394 97-424 (441)
94 PRK13104 secA preprotein trans 100.0 4.8E-29 1E-33 241.2 29.0 318 58-388 79-589 (896)
95 COG4581 Superfamily II RNA hel 100.0 2.1E-29 4.5E-34 246.5 24.4 315 56-385 114-536 (1041)
96 PRK12904 preprotein translocas 100.0 9.9E-29 2.2E-33 238.8 28.3 318 58-388 78-575 (830)
97 PRK12906 secA preprotein trans 100.0 1.3E-28 2.8E-33 237.1 24.6 318 58-388 77-555 (796)
98 KOG0948 Nuclear exosomal RNA h 100.0 2E-29 4.3E-34 232.7 17.3 308 62-386 129-539 (1041)
99 PRK12899 secA preprotein trans 100.0 2.1E-27 4.6E-32 229.5 28.3 148 43-195 65-228 (970)
100 KOG0385 Chromatin remodeling c 100.0 7.5E-27 1.6E-31 216.5 25.6 328 62-401 167-616 (971)
101 PRK13107 preprotein translocas 100.0 1.4E-26 3E-31 223.6 26.5 318 58-388 79-593 (908)
102 PF00270 DEAD: DEAD/DEAH box h 100.0 3.5E-27 7.7E-32 194.5 18.3 164 64-228 1-167 (169)
103 KOG0950 DNA polymerase theta/e 100.0 2.7E-27 5.9E-32 225.0 19.1 338 45-392 206-617 (1008)
104 COG1643 HrpA HrpA-like helicas 99.9 7.6E-26 1.6E-30 220.2 26.0 310 64-389 52-390 (845)
105 COG1203 CRISPR-associated heli 99.9 9.2E-26 2E-30 223.5 22.8 321 62-386 195-550 (733)
106 TIGR00348 hsdR type I site-spe 99.9 7.7E-25 1.7E-29 214.7 27.9 299 62-373 238-634 (667)
107 COG4096 HsdR Type I site-speci 99.9 1.6E-25 3.4E-30 211.0 21.9 295 61-373 164-525 (875)
108 COG1110 Reverse gyrase [DNA re 99.9 1.5E-24 3.3E-29 207.6 28.8 284 54-357 74-416 (1187)
109 KOG0922 DEAH-box RNA helicase 99.9 4E-25 8.6E-30 203.6 22.9 308 64-388 53-392 (674)
110 KOG0387 Transcription-coupled 99.9 5.5E-24 1.2E-28 198.5 26.3 317 62-386 205-658 (923)
111 COG1198 PriA Primosomal protei 99.9 1.3E-23 2.8E-28 201.8 24.3 320 62-395 198-612 (730)
112 KOG0923 mRNA splicing factor A 99.9 3.1E-23 6.6E-28 189.8 24.4 310 62-387 265-607 (902)
113 KOG0384 Chromodomain-helicase 99.9 1.7E-24 3.8E-29 210.1 16.1 349 35-399 349-826 (1373)
114 TIGR01407 dinG_rel DnaQ family 99.9 3.2E-22 6.9E-27 202.4 32.4 334 47-386 231-814 (850)
115 PRK12326 preprotein translocas 99.9 1.7E-22 3.7E-27 191.0 26.3 317 58-388 75-549 (764)
116 PRK12900 secA preprotein trans 99.9 7.3E-23 1.6E-27 198.8 21.9 124 264-389 581-714 (1025)
117 KOG1000 Chromatin remodeling p 99.9 7.6E-22 1.7E-26 175.1 26.0 327 62-400 198-619 (689)
118 KOG0390 DNA repair protein, SN 99.9 2.6E-21 5.6E-26 185.0 29.5 319 62-386 238-707 (776)
119 KOG0949 Predicted helicase, DE 99.9 3.9E-22 8.5E-27 189.6 21.6 160 62-226 511-674 (1330)
120 KOG1123 RNA polymerase II tran 99.9 8.2E-23 1.8E-27 181.5 15.7 311 61-393 301-660 (776)
121 PRK13103 secA preprotein trans 99.9 8.4E-22 1.8E-26 190.8 23.9 316 58-388 79-593 (913)
122 TIGR00631 uvrb excinuclease AB 99.9 3.3E-21 7.1E-26 187.0 28.1 130 264-394 425-561 (655)
123 KOG0920 ATP-dependent RNA heli 99.9 8.5E-22 1.9E-26 191.4 23.4 316 63-389 174-547 (924)
124 COG4889 Predicted helicase [Ge 99.9 3E-23 6.5E-28 195.0 10.1 319 59-383 158-583 (1518)
125 KOG0392 SNF2 family DNA-depend 99.9 1.3E-21 2.9E-26 189.7 20.7 317 62-386 975-1454(1549)
126 KOG0924 mRNA splicing factor A 99.9 8.7E-22 1.9E-26 180.8 17.4 307 64-387 358-698 (1042)
127 smart00487 DEXDc DEAD-like hel 99.9 6.1E-21 1.3E-25 161.8 21.5 187 57-244 3-191 (201)
128 KOG0925 mRNA splicing factor A 99.9 8.3E-21 1.8E-25 168.2 22.4 326 39-386 24-387 (699)
129 COG0556 UvrB Helicase subunit 99.9 2.8E-20 6.1E-25 167.1 24.2 164 214-386 387-557 (663)
130 PRK05298 excinuclease ABC subu 99.9 4E-20 8.7E-25 180.9 26.6 145 265-410 430-590 (652)
131 PRK12903 secA preprotein trans 99.9 7.2E-20 1.6E-24 175.8 23.9 316 58-388 75-541 (925)
132 PRK07246 bifunctional ATP-depe 99.9 4.4E-19 9.5E-24 177.3 30.6 315 58-386 242-783 (820)
133 KOG0389 SNF2 family DNA-depend 99.8 1.6E-19 3.4E-24 168.8 21.8 318 62-386 399-888 (941)
134 KOG4150 Predicted ATP-dependen 99.8 3.3E-20 7.3E-25 167.4 16.6 355 54-411 278-667 (1034)
135 KOG0926 DEAH-box RNA helicase 99.8 5.6E-20 1.2E-24 171.8 16.4 303 69-386 263-704 (1172)
136 CHL00122 secA preprotein trans 99.8 8.5E-19 1.8E-23 169.4 24.7 276 58-346 73-491 (870)
137 TIGR03117 cas_csf4 CRISPR-asso 99.8 1.2E-17 2.5E-22 159.9 31.8 116 268-386 460-616 (636)
138 PRK08074 bifunctional ATP-depe 99.8 1.8E-17 3.8E-22 168.8 30.7 109 278-386 751-893 (928)
139 cd00079 HELICc Helicase superf 99.8 5.2E-19 1.1E-23 139.1 14.3 118 265-382 12-131 (131)
140 KOG0386 Chromatin remodeling c 99.8 1.6E-19 3.6E-24 172.7 11.9 319 59-387 391-837 (1157)
141 KOG0953 Mitochondrial RNA heli 99.8 1.3E-18 2.9E-23 156.8 16.7 282 78-405 192-492 (700)
142 cd00046 DEXDc DEAD-like helica 99.8 3.2E-18 6.9E-23 136.6 16.9 144 78-223 1-144 (144)
143 PRK12902 secA preprotein trans 99.8 2.8E-17 6.2E-22 158.7 24.6 276 58-346 82-506 (939)
144 KOG1002 Nucleotide excision re 99.8 1.3E-16 2.7E-21 142.2 22.9 121 266-386 621-749 (791)
145 PF04851 ResIII: Type III rest 99.8 1.1E-18 2.4E-23 145.9 9.3 151 62-224 3-183 (184)
146 PF00271 Helicase_C: Helicase 99.8 1.6E-18 3.5E-23 122.5 8.3 78 297-374 1-78 (78)
147 KOG0388 SNF2 family DNA-depend 99.8 4.4E-17 9.5E-22 150.8 17.7 121 266-386 1029-1154(1185)
148 PRK11747 dinG ATP-dependent DN 99.7 3.7E-15 8E-20 147.3 31.4 112 270-386 527-674 (697)
149 KOG4439 RNA polymerase II tran 99.7 1.7E-16 3.6E-21 147.0 18.8 109 278-386 745-858 (901)
150 COG1199 DinG Rad3-related DNA 99.7 7.2E-16 1.6E-20 153.6 25.1 112 270-385 471-616 (654)
151 TIGR02562 cas3_yersinia CRISPR 99.7 3.3E-16 7.2E-21 153.7 21.3 325 61-391 407-899 (1110)
152 KOG0391 SNF2 family DNA-depend 99.7 1.5E-15 3.3E-20 147.3 23.9 121 266-386 1261-1387(1958)
153 KOG0951 RNA helicase BRR2, DEA 99.7 6.3E-16 1.4E-20 151.3 20.1 310 62-393 1143-1501(1674)
154 PRK12901 secA preprotein trans 99.7 6.8E-16 1.5E-20 150.9 20.0 122 265-388 612-743 (1112)
155 TIGR00604 rad3 DNA repair heli 99.7 1.3E-14 2.9E-19 144.6 27.3 74 58-131 6-83 (705)
156 COG0610 Type I site-specific r 99.7 2E-14 4.3E-19 145.8 26.6 313 77-401 273-667 (962)
157 PRK14873 primosome assembly pr 99.7 1.2E-14 2.6E-19 141.2 21.7 137 81-230 164-310 (665)
158 KOG1015 Transcription regulato 99.6 1.8E-14 3.9E-19 137.5 19.5 121 266-386 1127-1277(1567)
159 PF06862 DUF1253: Protein of u 99.6 5E-13 1.1E-17 122.0 28.0 292 103-395 32-424 (442)
160 smart00490 HELICc helicase sup 99.6 1.1E-15 2.3E-20 109.4 8.6 81 294-374 2-82 (82)
161 PF02399 Herpes_ori_bp: Origin 99.6 1.1E-13 2.4E-18 132.8 23.9 290 78-386 50-388 (824)
162 COG0553 HepA Superfamily II DN 99.6 2.6E-13 5.7E-18 140.7 25.1 322 61-387 337-823 (866)
163 PF07652 Flavi_DEAD: Flaviviru 99.5 1E-13 2.3E-18 105.4 10.0 137 76-227 3-140 (148)
164 PF00176 SNF2_N: SNF2 family N 99.5 1.4E-13 2.9E-18 124.4 10.8 140 77-225 25-174 (299)
165 COG0653 SecA Preprotein transl 99.4 6.7E-12 1.5E-16 121.6 16.1 313 62-387 80-546 (822)
166 KOG2340 Uncharacterized conser 99.4 6.5E-11 1.4E-15 107.2 17.7 334 61-395 215-677 (698)
167 smart00488 DEXDc2 DEAD-like he 99.3 4.3E-11 9.3E-16 106.1 13.2 73 58-131 5-84 (289)
168 smart00489 DEXDc3 DEAD-like he 99.3 4.3E-11 9.3E-16 106.1 13.2 73 58-131 5-84 (289)
169 KOG1016 Predicted DNA helicase 99.3 1.3E-09 2.9E-14 103.0 21.5 108 280-387 720-848 (1387)
170 PRK15483 type III restriction- 99.2 6.2E-09 1.3E-13 103.6 25.6 73 329-401 501-583 (986)
171 PF07517 SecA_DEAD: SecA DEAD- 99.0 6E-09 1.3E-13 89.9 14.2 130 58-195 74-210 (266)
172 KOG1001 Helicase-like transcri 99.0 9E-10 2E-14 106.9 8.8 101 281-381 541-643 (674)
173 KOG1133 Helicase of the DEAD s 99.0 1.7E-06 3.6E-11 81.8 27.8 103 280-385 630-779 (821)
174 COG3587 Restriction endonuclea 98.9 1.7E-08 3.6E-13 97.0 13.6 73 328-400 482-567 (985)
175 PF13872 AAA_34: P-loop contai 98.8 3.9E-08 8.5E-13 85.0 11.8 157 62-226 37-223 (303)
176 KOG0921 Dosage compensation co 98.8 3.3E-08 7.2E-13 95.3 11.7 303 68-385 384-773 (1282)
177 PF02562 PhoH: PhoH-like prote 98.8 6.3E-09 1.4E-13 86.1 5.5 146 61-222 3-155 (205)
178 KOG0952 DNA/RNA helicase MER3/ 98.8 9E-10 2E-14 107.5 0.1 129 64-196 929-1060(1230)
179 PF13086 AAA_11: AAA domain; P 98.8 8.5E-08 1.8E-12 83.3 11.4 68 63-130 2-75 (236)
180 KOG1802 RNA helicase nonsense 98.7 3.8E-07 8.3E-12 85.5 14.6 86 52-143 400-485 (935)
181 PF13307 Helicase_C_2: Helicas 98.7 4.6E-08 9.9E-13 79.6 7.8 107 278-386 8-150 (167)
182 PF13604 AAA_30: AAA domain; P 98.7 1.1E-07 2.4E-12 79.5 8.9 123 62-222 1-130 (196)
183 TIGR00596 rad1 DNA repair prot 98.6 1.4E-06 3E-11 87.0 17.2 68 158-225 7-74 (814)
184 PRK10536 hypothetical protein; 98.5 1.8E-06 3.8E-11 73.7 12.5 143 59-220 56-210 (262)
185 KOG1131 RNA polymerase II tran 98.5 7.1E-05 1.5E-09 68.8 21.4 73 58-130 12-89 (755)
186 PF09848 DUF2075: Uncharacteri 98.4 2.5E-06 5.4E-11 78.5 9.9 108 79-209 3-117 (352)
187 PF13245 AAA_19: Part of AAA d 98.3 2.2E-06 4.8E-11 59.1 6.4 52 77-128 10-62 (76)
188 TIGR01447 recD exodeoxyribonuc 98.3 7.9E-06 1.7E-10 79.5 12.1 139 65-222 148-295 (586)
189 TIGR01448 recD_rel helicase, p 98.3 1.1E-05 2.3E-10 80.9 12.8 131 61-222 322-452 (720)
190 KOG1803 DNA helicase [Replicat 98.3 3.2E-06 7E-11 79.0 8.1 66 61-129 184-250 (649)
191 COG3421 Uncharacterized protei 98.3 8.9E-06 1.9E-10 75.9 10.8 113 82-196 2-126 (812)
192 TIGR00376 DNA helicase, putati 98.2 1.1E-05 2.4E-10 79.6 11.7 67 61-130 156-223 (637)
193 PRK10875 recD exonuclease V su 98.2 1.3E-05 2.8E-10 78.2 11.7 140 64-222 154-301 (615)
194 PF12340 DUF3638: Protein of u 98.2 4.9E-05 1.1E-09 63.7 12.4 127 41-172 4-144 (229)
195 KOG1132 Helicase of the DEAD s 98.1 1.5E-05 3.1E-10 77.8 9.9 40 62-101 21-64 (945)
196 COG1875 NYN ribonuclease and A 98.1 2.3E-05 4.9E-10 69.2 9.8 141 58-220 224-385 (436)
197 PF00580 UvrD-helicase: UvrD/R 98.1 2E-05 4.3E-10 71.7 9.8 122 63-192 1-125 (315)
198 PF13401 AAA_22: AAA domain; P 98.0 2.7E-05 5.8E-10 60.7 7.1 37 184-223 89-125 (131)
199 PRK04296 thymidine kinase; Pro 98.0 2E-05 4.4E-10 65.6 6.7 36 78-116 3-38 (190)
200 smart00492 HELICc3 helicase su 98.0 8E-05 1.7E-09 58.4 9.5 73 312-384 30-136 (141)
201 PRK08181 transposase; Validate 97.9 0.00012 2.6E-09 64.1 11.2 123 63-229 88-215 (269)
202 smart00491 HELICc2 helicase su 97.9 5.8E-05 1.3E-09 59.2 8.4 68 317-384 32-137 (142)
203 KOG0298 DEAD box-containing he 97.9 3.9E-05 8.4E-10 77.6 9.1 148 77-229 374-556 (1394)
204 TIGR02768 TraA_Ti Ti-type conj 97.9 0.00027 5.8E-09 71.3 14.0 122 61-220 351-474 (744)
205 COG1419 FlhF Flagellar GTP-bin 97.8 0.00042 9.1E-09 62.9 13.2 132 77-235 203-336 (407)
206 PRK06526 transposase; Provisio 97.8 0.00013 2.8E-09 63.5 9.8 39 72-113 93-131 (254)
207 PRK13889 conjugal transfer rel 97.8 0.00039 8.4E-09 71.3 13.3 123 62-222 346-470 (988)
208 KOG0989 Replication factor C, 97.8 6.1E-05 1.3E-09 65.0 6.3 47 177-224 124-170 (346)
209 PRK12723 flagellar biosynthesi 97.7 0.00037 8E-09 64.2 11.0 130 77-234 174-309 (388)
210 cd00009 AAA The AAA+ (ATPases 97.6 0.00061 1.3E-08 54.0 10.3 19 77-95 19-37 (151)
211 PRK13826 Dtr system oriT relax 97.6 0.00098 2.1E-08 69.0 13.5 137 47-222 367-505 (1102)
212 smart00382 AAA ATPases associa 97.6 0.00017 3.7E-09 56.8 6.6 41 77-120 2-42 (148)
213 PF13871 Helicase_C_4: Helicas 97.5 0.00038 8.3E-09 60.4 7.5 81 319-399 51-143 (278)
214 KOG0383 Predicted helicase [Ge 97.5 6.1E-06 1.3E-10 79.9 -4.1 64 278-342 630-696 (696)
215 KOG1805 DNA replication helica 97.4 0.00058 1.3E-08 67.7 8.7 123 62-195 669-809 (1100)
216 PF05127 Helicase_RecD: Helica 97.4 9.7E-05 2.1E-09 59.7 2.6 124 81-224 1-124 (177)
217 PRK11889 flhF flagellar biosyn 97.4 0.002 4.3E-08 58.8 11.0 128 78-234 242-374 (436)
218 PRK14722 flhF flagellar biosyn 97.4 0.0013 2.9E-08 60.1 9.9 170 38-234 79-269 (374)
219 PRK14974 cell division protein 97.4 0.0029 6.2E-08 57.3 11.8 131 78-235 141-276 (336)
220 PRK14956 DNA polymerase III su 97.4 0.00077 1.7E-08 63.4 8.3 21 79-99 42-62 (484)
221 PRK10919 ATP-dependent DNA hel 97.3 0.0004 8.7E-09 69.5 6.3 70 62-133 2-72 (672)
222 PRK11054 helD DNA helicase IV; 97.3 0.00096 2.1E-08 66.4 8.2 71 61-133 195-266 (684)
223 PRK14960 DNA polymerase III su 97.3 0.0017 3.7E-08 63.2 9.5 38 182-220 118-155 (702)
224 TIGR02785 addA_Gpos recombinat 97.3 0.0016 3.4E-08 69.8 10.2 123 63-193 2-126 (1232)
225 PF00448 SRP54: SRP54-type pro 97.3 0.00096 2.1E-08 55.7 6.9 132 79-234 3-136 (196)
226 PRK14964 DNA polymerase III su 97.2 0.0029 6.2E-08 60.2 10.8 39 181-220 115-153 (491)
227 PRK07003 DNA polymerase III su 97.2 0.0021 4.5E-08 63.4 9.8 40 181-221 118-157 (830)
228 PRK00149 dnaA chromosomal repl 97.2 0.0023 5E-08 61.1 10.2 44 78-123 149-192 (450)
229 PRK14958 DNA polymerase III su 97.2 0.0021 4.6E-08 61.8 9.8 39 181-220 118-156 (509)
230 PF05970 PIF1: PIF1-like helic 97.2 0.00055 1.2E-08 63.3 5.5 58 62-122 1-64 (364)
231 PRK05703 flhF flagellar biosyn 97.2 0.0051 1.1E-07 57.9 11.7 129 77-234 221-354 (424)
232 PF00308 Bac_DnaA: Bacterial d 97.2 0.0012 2.6E-08 56.3 6.9 106 79-226 36-143 (219)
233 cd01120 RecA-like_NTPases RecA 97.2 0.0043 9.3E-08 50.1 10.1 38 80-120 2-39 (165)
234 PF13177 DNA_pol3_delta2: DNA 97.2 0.0013 2.8E-08 53.1 6.7 44 181-225 101-144 (162)
235 COG1435 Tdk Thymidine kinase [ 97.2 0.0035 7.7E-08 50.9 8.8 105 77-210 4-109 (201)
236 PRK12323 DNA polymerase III su 97.1 0.0029 6.3E-08 61.5 9.8 43 181-224 123-165 (700)
237 PRK05642 DNA replication initi 97.1 0.0024 5.2E-08 55.1 8.5 43 183-225 98-141 (234)
238 TIGR00362 DnaA chromosomal rep 97.1 0.0025 5.4E-08 60.1 9.2 37 78-115 137-173 (405)
239 COG2256 MGS1 ATPase related to 97.1 0.0019 4.1E-08 58.2 7.4 37 184-225 106-142 (436)
240 PRK12377 putative replication 97.1 0.0038 8.3E-08 54.0 9.1 44 77-124 101-144 (248)
241 TIGR01075 uvrD DNA helicase II 97.1 0.0011 2.4E-08 67.2 6.8 71 61-133 3-74 (715)
242 TIGR01074 rep ATP-dependent DN 97.1 0.0026 5.6E-08 64.2 9.3 69 63-133 2-71 (664)
243 PRK14949 DNA polymerase III su 97.1 0.002 4.3E-08 64.8 8.2 38 181-219 118-155 (944)
244 KOG1513 Nuclear helicase MOP-3 97.1 0.00094 2E-08 64.8 5.5 156 62-223 264-454 (1300)
245 PRK09183 transposase/IS protei 97.1 0.0084 1.8E-07 52.5 11.2 41 72-115 97-137 (259)
246 TIGR02760 TraI_TIGR conjugativ 97.0 0.059 1.3E-06 60.4 19.8 135 62-222 429-566 (1960)
247 PRK11773 uvrD DNA-dependent he 97.0 0.0012 2.7E-08 66.8 6.6 70 62-133 9-79 (721)
248 PF03354 Terminase_1: Phage Te 97.0 0.0017 3.7E-08 62.5 7.1 146 65-219 1-159 (477)
249 PRK08116 hypothetical protein; 97.0 0.0066 1.4E-07 53.4 10.2 41 78-122 115-155 (268)
250 PRK06893 DNA replication initi 97.0 0.0025 5.3E-08 54.9 7.3 45 182-226 91-137 (229)
251 PHA02533 17 large terminase pr 97.0 0.0042 9E-08 60.1 9.4 148 62-223 59-210 (534)
252 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.0034 7.4E-08 54.0 8.2 23 76-98 37-59 (226)
253 PRK07764 DNA polymerase III su 97.0 0.0057 1.2E-07 62.2 10.7 39 181-220 119-157 (824)
254 PRK14087 dnaA chromosomal repl 97.0 0.0034 7.4E-08 59.6 8.7 47 78-126 142-188 (450)
255 TIGR02881 spore_V_K stage V sp 97.0 0.0028 6.1E-08 55.8 7.6 21 77-97 42-62 (261)
256 PRK05707 DNA polymerase III su 97.0 0.0036 7.8E-08 56.7 8.2 39 62-100 3-45 (328)
257 cd01124 KaiC KaiC is a circadi 97.0 0.011 2.3E-07 49.2 10.6 48 80-131 2-49 (187)
258 PRK08769 DNA polymerase III su 97.0 0.0068 1.5E-07 54.5 9.8 143 61-224 3-154 (319)
259 PRK07952 DNA replication prote 96.9 0.013 2.8E-07 50.6 11.0 34 78-114 100-133 (244)
260 PRK14712 conjugal transfer nic 96.9 0.0049 1.1E-07 66.2 10.0 62 62-124 835-900 (1623)
261 PRK12402 replication factor C 96.9 0.008 1.7E-07 55.2 10.3 39 181-220 124-162 (337)
262 CHL00181 cbbX CbbX; Provisiona 96.9 0.0059 1.3E-07 54.3 9.0 22 77-98 59-80 (287)
263 PRK08903 DnaA regulatory inact 96.9 0.0039 8.5E-08 53.7 7.7 20 76-95 41-60 (227)
264 PRK08727 hypothetical protein; 96.9 0.0048 1E-07 53.2 8.1 45 183-227 94-140 (233)
265 PRK14088 dnaA chromosomal repl 96.9 0.0092 2E-07 56.6 10.7 38 78-116 131-168 (440)
266 PRK06921 hypothetical protein; 96.9 0.019 4.1E-07 50.5 11.9 38 77-116 117-154 (266)
267 COG1484 DnaC DNA replication p 96.9 0.0031 6.8E-08 54.9 7.0 50 76-129 104-153 (254)
268 PRK14961 DNA polymerase III su 96.9 0.0073 1.6E-07 55.9 9.7 39 181-220 118-156 (363)
269 PRK07994 DNA polymerase III su 96.9 0.0057 1.2E-07 60.1 9.3 38 181-219 118-155 (647)
270 PRK13709 conjugal transfer nic 96.9 0.0078 1.7E-07 65.5 11.0 63 61-124 966-1032(1747)
271 PRK08084 DNA replication initi 96.9 0.0038 8.2E-08 54.0 7.2 20 77-96 45-64 (235)
272 PRK14962 DNA polymerase III su 96.8 0.0049 1.1E-07 58.7 8.4 20 79-98 38-57 (472)
273 PRK14951 DNA polymerase III su 96.8 0.008 1.7E-07 58.9 9.6 39 181-220 123-161 (618)
274 PF13173 AAA_14: AAA domain 96.8 0.021 4.7E-07 44.0 10.2 38 183-224 62-99 (128)
275 COG1444 Predicted P-loop ATPas 96.8 0.016 3.4E-07 57.4 11.3 151 52-224 204-357 (758)
276 PRK06835 DNA replication prote 96.8 0.023 5E-07 51.5 11.7 43 77-123 183-225 (329)
277 PRK08691 DNA polymerase III su 96.8 0.0098 2.1E-07 58.5 9.9 39 181-220 118-156 (709)
278 cd01122 GP4d_helicase GP4d_hel 96.7 0.014 2.9E-07 51.8 10.1 56 72-130 25-80 (271)
279 PRK12727 flagellar biosynthesi 96.7 0.05 1.1E-06 52.0 13.9 60 40-99 299-372 (559)
280 PRK14086 dnaA chromosomal repl 96.7 0.0087 1.9E-07 58.2 9.2 106 79-226 316-423 (617)
281 PRK00411 cdc6 cell division co 96.7 0.0094 2E-07 56.1 9.4 37 77-114 55-91 (394)
282 PTZ00293 thymidine kinase; Pro 96.7 0.0073 1.6E-07 50.4 7.5 40 77-119 4-43 (211)
283 TIGR01547 phage_term_2 phage t 96.7 0.0044 9.5E-08 58.3 7.1 146 79-235 3-152 (396)
284 PRK09111 DNA polymerase III su 96.7 0.015 3.3E-07 57.0 10.8 40 180-220 130-169 (598)
285 PRK14965 DNA polymerase III su 96.7 0.0094 2E-07 58.6 9.4 39 181-220 118-156 (576)
286 PRK12422 chromosomal replicati 96.7 0.013 2.8E-07 55.6 9.9 36 78-116 142-177 (445)
287 PLN03025 replication factor C 96.7 0.018 3.9E-07 52.4 10.6 38 182-220 99-136 (319)
288 TIGR02880 cbbX_cfxQ probable R 96.7 0.011 2.4E-07 52.6 9.0 21 76-96 57-77 (284)
289 PRK06645 DNA polymerase III su 96.7 0.015 3.3E-07 55.8 10.4 22 78-99 44-65 (507)
290 PRK14952 DNA polymerase III su 96.7 0.0077 1.7E-07 58.8 8.5 39 181-220 117-155 (584)
291 PRK06871 DNA polymerase III su 96.7 0.0094 2E-07 53.7 8.4 137 63-223 3-147 (325)
292 PRK08451 DNA polymerase III su 96.6 0.012 2.5E-07 56.7 9.3 39 181-220 116-154 (535)
293 PRK14959 DNA polymerase III su 96.6 0.0085 1.8E-07 58.4 8.4 23 78-100 39-61 (624)
294 PRK00771 signal recognition pa 96.6 0.011 2.3E-07 55.7 8.8 132 77-234 95-228 (437)
295 PRK14957 DNA polymerase III su 96.6 0.017 3.7E-07 55.9 10.3 39 181-220 118-156 (546)
296 PRK05896 DNA polymerase III su 96.6 0.009 1.9E-07 58.0 8.4 22 78-99 39-60 (605)
297 PRK14969 DNA polymerase III su 96.6 0.014 2.9E-07 56.8 9.7 39 181-220 118-156 (527)
298 PRK14955 DNA polymerase III su 96.6 0.017 3.6E-07 54.3 9.8 22 78-99 39-60 (397)
299 PHA02544 44 clamp loader, smal 96.6 0.0068 1.5E-07 55.1 7.1 39 183-221 101-139 (316)
300 PHA03333 putative ATPase subun 96.6 0.073 1.6E-06 52.1 13.9 57 76-134 186-242 (752)
301 TIGR01073 pcrA ATP-dependent D 96.5 0.0065 1.4E-07 61.9 7.3 71 61-133 3-74 (726)
302 COG0470 HolB ATPase involved i 96.5 0.017 3.8E-07 52.6 9.5 40 181-221 108-147 (325)
303 PRK14963 DNA polymerase III su 96.5 0.0097 2.1E-07 57.3 7.8 20 79-98 38-57 (504)
304 PTZ00112 origin recognition co 96.5 0.044 9.6E-07 55.2 12.3 41 181-222 868-909 (1164)
305 PHA03368 DNA packaging termina 96.5 0.011 2.4E-07 57.3 7.9 132 78-224 255-391 (738)
306 PRK05563 DNA polymerase III su 96.4 0.023 4.9E-07 55.7 10.0 21 78-98 39-59 (559)
307 PRK14954 DNA polymerase III su 96.4 0.031 6.7E-07 55.1 10.8 23 78-100 39-61 (620)
308 PF05496 RuvB_N: Holliday junc 96.4 0.014 2.9E-07 49.1 7.1 18 78-95 51-68 (233)
309 PRK08533 flagellar accessory p 96.4 0.041 8.9E-07 47.3 10.3 54 74-131 21-74 (230)
310 COG2909 MalT ATP-dependent tra 96.4 0.012 2.6E-07 58.3 7.6 135 77-224 37-171 (894)
311 PRK07993 DNA polymerase III su 96.4 0.016 3.4E-07 52.8 8.0 140 62-224 2-149 (334)
312 PF00004 AAA: ATPase family as 96.4 0.0035 7.7E-08 48.6 3.4 15 80-94 1-15 (132)
313 PRK06731 flhF flagellar biosyn 96.4 0.074 1.6E-06 46.7 11.8 129 77-234 75-208 (270)
314 PRK14721 flhF flagellar biosyn 96.4 0.048 1E-06 50.9 11.2 127 76-229 190-317 (420)
315 PRK11331 5-methylcytosine-spec 96.3 0.012 2.7E-07 54.8 7.1 32 64-95 181-212 (459)
316 PRK06647 DNA polymerase III su 96.3 0.026 5.6E-07 55.2 9.6 21 78-98 39-59 (563)
317 PRK05580 primosome assembly pr 96.3 0.054 1.2E-06 54.5 12.1 99 257-356 166-267 (679)
318 COG4962 CpaF Flp pilus assembl 96.3 0.007 1.5E-07 53.8 5.1 60 59-122 154-214 (355)
319 PRK08939 primosomal protein Dn 96.3 0.032 7E-07 50.1 9.3 25 77-101 156-180 (306)
320 PF14617 CMS1: U3-containing 9 96.3 0.016 3.4E-07 49.9 6.9 86 107-193 125-212 (252)
321 PF06745 KaiC: KaiC; InterPro 96.2 0.017 3.7E-07 49.6 7.4 52 76-131 18-70 (226)
322 COG0593 DnaA ATPase involved i 96.2 0.042 9.1E-07 50.8 10.0 47 182-228 175-223 (408)
323 PRK13833 conjugal transfer pro 96.2 0.0084 1.8E-07 53.9 5.5 57 63-120 129-186 (323)
324 TIGR00678 holB DNA polymerase 96.2 0.045 9.7E-07 45.5 9.4 39 181-220 95-133 (188)
325 COG2805 PilT Tfp pilus assembl 96.2 0.0074 1.6E-07 52.4 4.6 29 78-107 126-154 (353)
326 KOG0701 dsRNA-specific nucleas 96.2 0.0056 1.2E-07 65.2 4.6 94 281-374 294-399 (1606)
327 COG3972 Superfamily I DNA and 96.2 0.026 5.6E-07 52.4 8.2 69 62-132 162-230 (660)
328 TIGR01425 SRP54_euk signal rec 96.2 0.11 2.4E-06 48.6 12.6 57 78-140 101-159 (429)
329 PF05876 Terminase_GpA: Phage 96.2 0.011 2.5E-07 57.7 6.4 124 62-195 16-147 (557)
330 TIGR00595 priA primosomal prot 96.2 0.041 9E-07 53.2 10.1 93 262-355 6-101 (505)
331 PRK00440 rfc replication facto 96.2 0.066 1.4E-06 48.7 11.1 38 182-220 102-139 (319)
332 PRK06090 DNA polymerase III su 96.2 0.027 5.8E-07 50.7 8.2 140 62-224 3-149 (319)
333 PRK07471 DNA polymerase III su 96.1 0.015 3.3E-07 53.5 6.8 44 180-224 139-182 (365)
334 PRK06964 DNA polymerase III su 96.1 0.016 3.6E-07 52.6 6.7 41 63-104 2-47 (342)
335 PRK10917 ATP-dependent DNA hel 96.1 0.066 1.4E-06 54.0 11.7 101 256-356 285-392 (681)
336 PRK12724 flagellar biosynthesi 96.1 0.087 1.9E-06 49.0 11.3 126 78-234 224-356 (432)
337 PRK13894 conjugal transfer ATP 96.1 0.0095 2.1E-07 53.7 5.1 57 63-120 133-190 (319)
338 PF02456 Adeno_IVa2: Adenoviru 96.1 0.024 5.3E-07 49.4 7.2 40 79-119 89-128 (369)
339 PHA00729 NTP-binding motif con 96.1 0.078 1.7E-06 44.9 10.2 75 159-233 59-138 (226)
340 PRK12726 flagellar biosynthesi 96.1 0.052 1.1E-06 49.6 9.5 120 77-225 206-329 (407)
341 TIGR02760 TraI_TIGR conjugativ 96.1 0.035 7.5E-07 62.2 10.1 62 61-124 1018-1084(1960)
342 KOG2028 ATPase related to the 96.0 0.026 5.6E-07 50.4 7.3 16 79-94 164-179 (554)
343 COG1474 CDC6 Cdc6-related prot 96.0 0.2 4.4E-06 46.2 13.5 27 78-105 43-69 (366)
344 KOG0739 AAA+-type ATPase [Post 96.0 0.072 1.6E-06 46.4 9.7 54 71-131 155-213 (439)
345 TIGR02782 TrbB_P P-type conjug 96.0 0.016 3.4E-07 52.0 6.1 57 63-120 117-174 (299)
346 PRK11823 DNA repair protein Ra 96.0 0.039 8.5E-07 52.5 9.1 51 77-131 80-130 (446)
347 COG4626 Phage terminase-like p 96.0 0.036 7.8E-07 52.6 8.5 146 62-222 61-224 (546)
348 PRK14948 DNA polymerase III su 96.0 0.043 9.4E-07 54.3 9.5 23 78-100 39-61 (620)
349 PRK09112 DNA polymerase III su 96.0 0.026 5.7E-07 51.7 7.5 42 181-223 140-181 (351)
350 PRK14723 flhF flagellar biosyn 96.0 0.053 1.2E-06 54.3 10.1 131 77-234 185-317 (767)
351 TIGR02397 dnaX_nterm DNA polym 96.0 0.05 1.1E-06 50.3 9.6 19 78-96 37-55 (355)
352 PRK14950 DNA polymerase III su 96.0 0.037 8E-07 54.7 9.0 21 78-98 39-59 (585)
353 PF01695 IstB_IS21: IstB-like 95.9 0.013 2.8E-07 48.1 4.8 48 72-123 42-89 (178)
354 TIGR02928 orc1/cdc6 family rep 95.9 0.027 5.8E-07 52.4 7.3 25 77-102 40-64 (365)
355 cd00561 CobA_CobO_BtuR ATP:cor 95.9 0.21 4.6E-06 39.9 11.1 133 80-230 5-145 (159)
356 PRK05986 cob(I)alamin adenolsy 95.8 0.036 7.9E-07 45.5 7.0 143 76-230 21-165 (191)
357 PRK14873 primosome assembly pr 95.8 0.083 1.8E-06 52.7 10.8 92 263-355 170-265 (665)
358 COG3973 Superfamily I DNA and 95.8 0.039 8.4E-07 52.6 7.9 84 48-132 191-284 (747)
359 cd00984 DnaB_C DnaB helicase C 95.8 0.058 1.3E-06 46.9 8.8 41 74-116 10-50 (242)
360 KOG0733 Nuclear AAA ATPase (VC 95.8 0.031 6.8E-07 53.3 7.2 81 181-276 603-694 (802)
361 PRK04195 replication factor C 95.8 0.073 1.6E-06 51.4 10.1 19 77-95 39-57 (482)
362 PRK13342 recombination factor 95.8 0.034 7.3E-07 52.6 7.7 18 78-95 37-54 (413)
363 cd01121 Sms Sms (bacterial rad 95.8 0.07 1.5E-06 49.3 9.4 51 77-131 82-132 (372)
364 PRK07940 DNA polymerase III su 95.8 0.035 7.5E-07 51.7 7.5 41 181-222 116-156 (394)
365 TIGR03881 KaiC_arch_4 KaiC dom 95.8 0.12 2.5E-06 44.5 10.4 51 76-130 19-69 (229)
366 KOG0991 Replication factor C, 95.8 0.037 8.1E-07 46.3 6.7 41 181-222 112-152 (333)
367 PRK06067 flagellar accessory p 95.7 0.17 3.8E-06 43.7 11.2 52 76-131 24-75 (234)
368 PRK10867 signal recognition pa 95.7 0.22 4.7E-06 46.9 12.4 23 79-101 102-124 (433)
369 COG2804 PulE Type II secretory 95.7 0.017 3.6E-07 54.2 4.9 42 64-106 243-286 (500)
370 KOG0738 AAA+-type ATPase [Post 95.7 0.044 9.6E-07 49.4 7.2 64 31-94 174-262 (491)
371 PRK06995 flhF flagellar biosyn 95.7 0.091 2E-06 50.0 9.8 23 77-99 256-278 (484)
372 TIGR03015 pepcterm_ATPase puta 95.6 0.36 7.7E-06 42.7 13.2 33 63-95 24-61 (269)
373 TIGR00064 ftsY signal recognit 95.6 0.16 3.4E-06 44.9 10.6 132 77-234 72-213 (272)
374 PRK05973 replicative DNA helic 95.6 0.03 6.5E-07 48.0 5.9 82 45-131 23-114 (237)
375 PF05729 NACHT: NACHT domain 95.6 0.085 1.8E-06 42.6 8.5 20 79-98 2-21 (166)
376 COG1198 PriA Primosomal protei 95.6 0.048 1E-06 54.3 8.0 99 255-354 219-320 (730)
377 PRK08699 DNA polymerase III su 95.6 0.053 1.2E-06 49.2 7.6 145 63-223 2-153 (325)
378 PRK07399 DNA polymerase III su 95.5 0.071 1.5E-06 48.1 8.4 60 161-223 104-163 (314)
379 PRK13341 recombination factor 95.5 0.059 1.3E-06 54.3 8.5 18 78-95 53-70 (725)
380 TIGR03689 pup_AAA proteasome A 95.5 0.038 8.2E-07 53.0 6.8 18 77-94 216-233 (512)
381 PF00265 TK: Thymidine kinase; 95.5 0.0094 2E-07 48.7 2.4 37 80-119 4-40 (176)
382 TIGR00643 recG ATP-dependent D 95.5 0.12 2.7E-06 51.7 10.8 100 257-356 260-366 (630)
383 PF02572 CobA_CobO_BtuR: ATP:c 95.5 0.26 5.6E-06 39.9 10.4 138 80-229 6-145 (172)
384 PF03969 AFG1_ATPase: AFG1-lik 95.5 0.16 3.4E-06 46.8 10.4 110 77-227 62-172 (362)
385 TIGR00708 cobA cob(I)alamin ad 95.5 0.094 2E-06 42.4 7.9 132 79-229 7-146 (173)
386 COG1110 Reverse gyrase [DNA re 95.5 0.084 1.8E-06 53.5 9.0 90 266-355 112-211 (1187)
387 PRK14971 DNA polymerase III su 95.4 0.18 3.8E-06 50.1 11.2 40 180-220 119-158 (614)
388 KOG0737 AAA+-type ATPase [Post 95.3 0.25 5.3E-06 44.5 10.7 60 35-94 84-144 (386)
389 TIGR00767 rho transcription te 95.3 0.18 4E-06 46.5 10.3 30 74-104 165-194 (415)
390 cd03115 SRP The signal recogni 95.3 0.48 1E-05 38.7 12.1 20 80-99 3-22 (173)
391 PRK13851 type IV secretion sys 95.3 0.028 6E-07 51.2 5.0 43 74-120 159-201 (344)
392 PRK06620 hypothetical protein; 95.3 0.034 7.3E-07 47.2 5.2 18 78-95 45-62 (214)
393 PF05621 TniB: Bacterial TniB 95.3 0.081 1.8E-06 46.6 7.6 17 78-94 62-78 (302)
394 TIGR02525 plasmid_TraJ plasmid 95.3 0.038 8.3E-07 50.9 5.9 43 76-119 148-190 (372)
395 TIGR03499 FlhF flagellar biosy 95.3 0.038 8.2E-07 49.2 5.7 25 77-101 194-218 (282)
396 TIGR03877 thermo_KaiC_1 KaiC d 95.3 0.03 6.4E-07 48.5 4.9 52 76-131 20-71 (237)
397 PRK08058 DNA polymerase III su 95.3 0.089 1.9E-06 48.0 8.2 41 181-222 109-149 (329)
398 PRK14953 DNA polymerase III su 95.3 0.2 4.3E-06 48.3 10.7 19 80-98 41-59 (486)
399 PRK06305 DNA polymerase III su 95.2 0.11 2.3E-06 49.6 8.9 23 78-100 40-62 (451)
400 PRK09376 rho transcription ter 95.1 0.068 1.5E-06 49.0 6.8 29 75-104 167-195 (416)
401 KOG0742 AAA+-type ATPase [Post 95.1 0.061 1.3E-06 48.9 6.2 137 37-226 349-496 (630)
402 TIGR00959 ffh signal recogniti 95.1 0.49 1.1E-05 44.6 12.5 22 79-100 101-122 (428)
403 PRK08506 replicative DNA helic 95.0 0.34 7.4E-06 46.6 11.7 116 74-195 189-315 (472)
404 KOG2228 Origin recognition com 95.0 0.51 1.1E-05 42.1 11.5 56 168-223 123-181 (408)
405 PF01443 Viral_helicase1: Vira 95.0 0.027 5.9E-07 48.6 4.0 15 80-94 1-15 (234)
406 KOG0298 DEAD box-containing he 95.0 0.03 6.5E-07 57.7 4.5 94 279-377 1221-1315(1394)
407 PRK06904 replicative DNA helic 95.0 0.29 6.2E-06 47.0 11.0 118 73-195 217-347 (472)
408 TIGR02524 dot_icm_DotB Dot/Icm 94.9 0.048 1E-06 50.1 5.5 27 76-103 133-159 (358)
409 PRK07133 DNA polymerase III su 94.9 0.15 3.2E-06 51.0 9.1 39 181-220 117-155 (725)
410 TIGR00580 mfd transcription-re 94.9 0.23 5E-06 51.6 10.8 101 256-356 475-582 (926)
411 PRK11034 clpA ATP-dependent Cl 94.9 0.29 6.3E-06 49.7 11.3 19 77-95 207-225 (758)
412 COG5008 PilU Tfp pilus assembl 94.8 0.062 1.4E-06 45.9 5.3 36 78-115 128-163 (375)
413 TIGR03600 phage_DnaB phage rep 94.8 0.16 3.4E-06 48.3 8.8 122 70-196 187-319 (421)
414 PRK14970 DNA polymerase III su 94.8 0.25 5.4E-06 46.0 9.9 19 78-96 40-58 (367)
415 PF03237 Terminase_6: Terminas 94.8 0.51 1.1E-05 43.8 12.2 145 81-238 1-154 (384)
416 PRK04841 transcriptional regul 94.8 0.2 4.3E-06 52.8 10.4 42 183-224 122-163 (903)
417 PHA00012 I assembly protein 94.6 0.84 1.8E-05 40.8 11.9 27 80-106 4-30 (361)
418 COG0210 UvrD Superfamily I DNA 94.6 0.081 1.8E-06 53.4 6.7 70 62-133 2-72 (655)
419 PHA00350 putative assembly pro 94.6 0.27 5.8E-06 45.5 9.3 26 80-105 4-30 (399)
420 PRK13900 type IV secretion sys 94.6 0.048 1E-06 49.6 4.5 43 74-120 157-199 (332)
421 cd01130 VirB11-like_ATPase Typ 94.6 0.08 1.7E-06 43.9 5.5 40 62-102 9-49 (186)
422 KOG0732 AAA+-type ATPase conta 94.5 0.08 1.7E-06 54.3 6.2 59 35-94 257-316 (1080)
423 COG1132 MdlB ABC-type multidru 94.5 0.26 5.5E-06 48.9 9.7 31 183-213 484-514 (567)
424 cd01129 PulE-GspE PulE/GspE Th 94.4 0.11 2.3E-06 45.7 6.3 59 55-119 59-119 (264)
425 COG1074 RecB ATP-dependent exo 94.4 0.063 1.4E-06 57.3 5.5 56 76-131 15-72 (1139)
426 TIGR02639 ClpA ATP-dependent C 94.4 0.25 5.4E-06 50.5 9.5 19 77-95 203-221 (731)
427 TIGR01243 CDC48 AAA family ATP 94.3 0.2 4.4E-06 51.2 8.7 20 75-94 210-229 (733)
428 PRK10436 hypothetical protein; 94.3 0.11 2.3E-06 49.6 6.2 39 64-103 203-243 (462)
429 TIGR00635 ruvB Holliday juncti 94.3 0.07 1.5E-06 48.2 4.9 18 78-95 31-48 (305)
430 cd01128 rho_factor Transcripti 94.3 0.14 3.1E-06 44.4 6.5 30 73-103 12-41 (249)
431 COG2109 BtuR ATP:corrinoid ade 94.3 0.39 8.4E-06 39.0 8.3 139 80-230 31-172 (198)
432 PF03796 DnaB_C: DnaB-like hel 94.2 0.25 5.5E-06 43.4 8.2 144 75-223 17-180 (259)
433 CHL00176 ftsH cell division pr 94.2 0.23 5E-06 49.4 8.6 18 77-94 216-233 (638)
434 COG1200 RecG RecG-like helicas 94.2 0.43 9.3E-06 46.7 9.9 79 277-355 309-392 (677)
435 PRK08840 replicative DNA helic 94.2 0.5 1.1E-05 45.2 10.5 132 59-195 199-342 (464)
436 PF00437 T2SE: Type II/IV secr 94.1 0.06 1.3E-06 47.7 4.1 43 75-120 125-167 (270)
437 PF12846 AAA_10: AAA-like doma 94.1 0.056 1.2E-06 48.6 3.9 40 77-119 1-40 (304)
438 PRK08006 replicative DNA helic 94.1 0.75 1.6E-05 44.2 11.5 118 73-195 220-349 (471)
439 PRK07004 replicative DNA helic 94.1 0.39 8.5E-06 46.0 9.6 117 74-195 210-337 (460)
440 PHA03372 DNA packaging termina 94.0 0.73 1.6E-05 44.7 11.0 128 78-223 203-337 (668)
441 PRK04328 hypothetical protein; 93.9 0.096 2.1E-06 45.7 4.9 52 76-131 22-73 (249)
442 TIGR00416 sms DNA repair prote 93.9 0.29 6.4E-06 46.6 8.3 51 77-131 94-144 (454)
443 TIGR00665 DnaB replicative DNA 93.9 0.4 8.8E-06 45.7 9.4 117 74-195 192-318 (434)
444 TIGR02538 type_IV_pilB type IV 93.9 0.12 2.6E-06 50.8 5.9 45 55-103 295-341 (564)
445 TIGR02533 type_II_gspE general 93.9 0.13 2.9E-06 49.4 6.1 45 55-103 221-267 (486)
446 TIGR01243 CDC48 AAA family ATP 93.8 0.17 3.8E-06 51.7 7.2 18 77-94 487-504 (733)
447 PRK10689 transcription-repair 93.8 0.25 5.4E-06 52.7 8.4 100 256-355 624-730 (1147)
448 PRK05748 replicative DNA helic 93.8 0.48 1E-05 45.4 9.8 117 74-195 200-327 (448)
449 TIGR02868 CydC thiol reductant 93.8 0.18 3.9E-06 49.5 7.1 39 182-220 488-526 (529)
450 PRK09165 replicative DNA helic 93.8 0.56 1.2E-05 45.4 10.2 118 75-195 215-354 (497)
451 KOG0734 AAA+-type ATPase conta 93.8 0.22 4.8E-06 47.1 7.0 47 183-229 397-453 (752)
452 TIGR00614 recQ_fam ATP-depende 93.8 1.2 2.6E-05 43.0 12.6 78 279-356 51-136 (470)
453 PRK10865 protein disaggregatio 93.7 0.35 7.6E-06 50.2 9.2 19 77-95 199-217 (857)
454 TIGR02784 addA_alphas double-s 93.6 0.14 3E-06 55.1 6.4 98 77-174 10-123 (1141)
455 COG2812 DnaX DNA polymerase II 93.6 0.15 3.2E-06 48.8 5.7 40 180-220 117-156 (515)
456 COG1219 ClpX ATP-dependent pro 93.6 0.053 1.2E-06 47.6 2.5 18 77-94 97-114 (408)
457 cd01126 TraG_VirD4 The TraG/Tr 93.5 0.091 2E-06 49.2 4.3 56 79-143 1-56 (384)
458 COG0467 RAD55 RecA-superfamily 93.5 0.12 2.6E-06 45.5 4.9 54 75-132 21-74 (260)
459 cd01393 recA_like RecA is a b 93.5 0.24 5.1E-06 42.5 6.6 43 76-118 18-63 (226)
460 TIGR03346 chaperone_ClpB ATP-d 93.5 0.49 1.1E-05 49.3 9.8 19 77-95 194-212 (852)
461 PRK07414 cob(I)yrinic acid a,c 93.5 2.4 5.2E-05 34.5 11.7 135 78-229 22-164 (178)
462 KOG0058 Peptide exporter, ABC 93.5 0.098 2.1E-06 51.3 4.4 41 181-222 621-661 (716)
463 cd01131 PilT Pilus retraction 93.4 0.11 2.4E-06 43.5 4.2 39 79-119 3-41 (198)
464 TIGR03878 thermo_KaiC_2 KaiC d 93.3 0.14 3E-06 45.0 4.9 38 76-116 35-72 (259)
465 PRK08760 replicative DNA helic 93.3 0.47 1E-05 45.6 8.8 117 74-195 226-352 (476)
466 KOG1807 Helicases [Replication 93.3 0.13 2.8E-06 50.5 4.8 68 62-129 378-448 (1025)
467 PRK09087 hypothetical protein; 93.2 0.27 5.8E-06 42.1 6.4 40 184-225 89-129 (226)
468 KOG0730 AAA+-type ATPase [Post 93.2 0.59 1.3E-05 45.5 9.1 55 37-94 428-485 (693)
469 PF02534 T4SS-DNA_transf: Type 93.2 0.13 2.9E-06 49.6 5.0 49 78-131 45-93 (469)
470 PRK14701 reverse gyrase; Provi 93.1 0.71 1.5E-05 51.0 10.6 61 278-338 121-187 (1638)
471 COG0552 FtsY Signal recognitio 93.1 2 4.3E-05 38.5 11.4 132 79-234 141-280 (340)
472 PF06733 DEAD_2: DEAD_2; Inte 93.0 0.064 1.4E-06 44.0 2.2 42 155-197 116-160 (174)
473 KOG0744 AAA+-type ATPase [Post 92.9 0.43 9.3E-06 42.3 7.0 66 77-143 177-256 (423)
474 TIGR01241 FtsH_fam ATP-depende 92.9 0.45 9.8E-06 46.2 8.1 55 37-94 49-105 (495)
475 PF13481 AAA_25: AAA domain; P 92.8 0.25 5.5E-06 41.1 5.6 63 70-133 24-94 (193)
476 KOG0740 AAA+-type ATPase [Post 92.8 0.57 1.2E-05 43.6 8.1 78 183-277 246-336 (428)
477 TIGR02640 gas_vesic_GvpN gas v 92.8 0.11 2.4E-06 45.7 3.5 28 69-96 13-40 (262)
478 COG0630 VirB11 Type IV secreto 92.8 0.15 3.2E-06 46.0 4.3 55 62-120 127-182 (312)
479 TIGR03880 KaiC_arch_3 KaiC dom 92.7 0.25 5.4E-06 42.4 5.4 52 76-131 15-66 (224)
480 CHL00095 clpC Clp protease ATP 92.7 0.6 1.3E-05 48.4 9.0 20 77-96 200-219 (821)
481 TIGR01420 pilT_fam pilus retra 92.6 0.19 4.1E-06 46.2 4.8 42 77-120 122-163 (343)
482 cd00268 DEADc DEAD-box helicas 92.6 4.4 9.4E-05 33.9 12.9 75 278-356 68-152 (203)
483 PRK05564 DNA polymerase III su 92.6 1 2.2E-05 40.9 9.5 39 181-220 92-130 (313)
484 PF01637 Arch_ATPase: Archaeal 92.5 0.12 2.5E-06 44.5 3.3 25 77-102 20-44 (234)
485 PF01580 FtsK_SpoIIIE: FtsK/Sp 92.5 0.17 3.8E-06 42.6 4.2 30 74-103 35-64 (205)
486 TIGR03345 VI_ClpV1 type VI sec 92.5 0.32 6.9E-06 50.3 6.7 28 67-94 192-225 (852)
487 TIGR00602 rad24 checkpoint pro 92.4 0.85 1.8E-05 45.3 9.3 18 77-94 110-127 (637)
488 TIGR02237 recomb_radB DNA repa 92.4 0.17 3.7E-06 42.8 4.0 39 76-117 11-49 (209)
489 PF06309 Torsin: Torsin; Inte 92.4 0.42 9.1E-06 36.3 5.5 51 81-131 57-112 (127)
490 COG1197 Mfd Transcription-repa 92.3 0.64 1.4E-05 48.4 8.5 77 278-354 642-723 (1139)
491 PRK10416 signal recognition pa 92.2 1.1 2.3E-05 40.7 9.0 54 181-234 195-255 (318)
492 PRK13897 type IV secretion sys 92.2 0.26 5.6E-06 48.6 5.4 58 77-143 158-215 (606)
493 TIGR02655 circ_KaiC circadian 92.2 0.22 4.7E-06 48.2 4.9 51 77-131 263-313 (484)
494 TIGR02788 VirB11 P-type DNA tr 92.1 0.25 5.4E-06 44.6 5.0 28 74-102 141-168 (308)
495 TIGR03819 heli_sec_ATPase heli 92.0 0.26 5.7E-06 45.0 5.0 61 54-120 156-217 (340)
496 COG1485 Predicted ATPase [Gene 92.0 3.6 7.8E-05 37.2 11.7 110 78-228 66-176 (367)
497 PRK05917 DNA polymerase III su 92.0 1.4 3E-05 39.2 9.2 43 181-224 94-136 (290)
498 TIGR00763 lon ATP-dependent pr 92.0 0.83 1.8E-05 47.1 9.0 18 77-94 347-364 (775)
499 PRK13764 ATPase; Provisional 91.9 0.32 6.9E-06 47.7 5.6 27 76-103 256-282 (602)
500 KOG2227 Pre-initiation complex 91.9 1.3 2.9E-05 41.4 9.1 49 77-126 175-224 (529)
No 1
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-65 Score=419.57 Aligned_cols=378 Identities=68% Similarity=1.065 Sum_probs=366.3
Q ss_pred hhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc
Q 015129 36 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 115 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~ 115 (413)
.....+|+++|+.+++.+.+.+.||+.|...|+.|++++++|++++..+..|+|||.++-+.+++.+.-.....+++++.
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lils 102 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILS 102 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEec
Confidence 36688999999999999999999999999999999999999999999999999999999888888887777767999999
Q ss_pred CcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHh
Q 015129 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML 195 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~ 195 (413)
||++|+.|..+.+..++...++.+..+.||.+..++.+.+.-+.+++.+||++.+++++...+....++++|+||++.++
T Consensus 103 PTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL 182 (400)
T KOG0328|consen 103 PTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEML 182 (400)
T ss_pred ChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHH
Confidence 99999999999999999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHH
Q 015129 196 SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYE 275 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (413)
+.++..++..+.+.+|+..|++++|||++.+..+....|+.+|+.+.+...+.+.+++++++..+..++++.+.|.++..
T Consensus 183 ~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd 262 (400)
T KOG0328|consen 183 NKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYD 262 (400)
T ss_pred HhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEcc
Q 015129 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 276 ~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
...-..++||||++..+..+.+.+++.+..+...||+|++++|.++++.|++|+.+||++|++.++|+|+|.++.||+||
T Consensus 263 ~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYD 342 (400)
T KOG0328|consen 263 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYD 342 (400)
T ss_pred hhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecC
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhhhcC
Q 015129 356 LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 413 (413)
Q Consensus 356 ~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
.|.+.+.|+||+||.||.|+.|.++-|+..+|.+.++.++++|.....++|+|+.+++
T Consensus 343 LP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~i 400 (400)
T KOG0328|consen 343 LPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADLI 400 (400)
T ss_pred CCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999875
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-64 Score=432.38 Aligned_cols=374 Identities=35% Similarity=0.550 Sum_probs=354.3
Q ss_pred chhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEE
Q 015129 35 YDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL 114 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv 114 (413)
.++...+|.++++.+.+.+++...|+..|+++|++++|.++.|+++|..|.||||||.+|++|+++.+........++|+
T Consensus 56 ~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVL 135 (476)
T KOG0330|consen 56 TDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVL 135 (476)
T ss_pred hhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEe
Confidence 35667799999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHH-cCCCCCCcceEEEeccchH
Q 015129 115 APTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLR-RQSLRPDYIKMFVLDEADE 193 (413)
Q Consensus 115 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~-~~~~~~~~~~~iV~DE~h~ 193 (413)
+|||+|+.|+.+.+..++...|+.+..+.||.+...+...+...++|+|+||+.|.+++. .+.+.++.++++|+|||++
T Consensus 136 tPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADr 215 (476)
T KOG0330|consen 136 TPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADR 215 (476)
T ss_pred cCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHh
Confidence 999999999999999999999999999999999888888888999999999999999998 6888899999999999999
Q ss_pred HhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHH
Q 015129 194 MLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL 273 (413)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (413)
+++.+|...+..++..+|...|.+++|||++.....+....+..|..+.+.......+.+.+.|..++. .++...|..+
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~-k~K~~yLV~l 294 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG-KDKDTYLVYL 294 (476)
T ss_pred hhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc-cccchhHHHH
Confidence 999999999999999999999999999999999999998889999999998888888899999888776 4577888889
Q ss_pred HHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEE
Q 015129 274 YETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 353 (413)
Q Consensus 274 ~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~ 353 (413)
++...++.+||||++...++.++-.|+..|..+..+||.|++..|...++.|++|..+||+||+++++|+|+|.+++||+
T Consensus 295 l~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN 374 (476)
T KOG0330|consen 295 LNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN 374 (476)
T ss_pred HHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhcccccc--CCchh
Q 015129 354 YDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE--LPSNV 409 (413)
Q Consensus 354 ~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 409 (413)
||.|.+..+|+||.||++|.|..|.++.+++..|.+.+.+|+-.+++.... +++|.
T Consensus 375 yDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~~ 432 (476)
T KOG0330|consen 375 YDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKNE 432 (476)
T ss_pred cCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchHH
Confidence 999999999999999999999999999999999999999999999998866 44443
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-63 Score=449.30 Aligned_cols=371 Identities=37% Similarity=0.610 Sum_probs=343.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHcccc------CCCceeEEEE
Q 015129 41 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY------GLVQCQALVL 114 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~------~~~~~~~liv 114 (413)
.|..+++++...+.++..||+.|+|+|.+.|+.+++|++++..+.||||||++|++|++.++.. ...++.+||+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999876 3446789999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHH
Q 015129 115 APTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 194 (413)
Q Consensus 115 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~ 194 (413)
+|||+||.|+...+.++.....++..+++||.....+...+..+.+|+|+||++|.++++.+...++++.++|+||||++
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHhhCC-CCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCc--ccccCeEEEEEEeccccchHHHHH
Q 015129 195 LSRGFKDQIYDIFQLLP-AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE--LTLEGIKQFYVNVEKEEWKLETLC 271 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ 271 (413)
++.+|...+++++..++ ...|.+++|||++.....+...++.++..+.+.... ....++.+....++ ...+...+.
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~ 330 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLG 330 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHH
Confidence 99999999999999994 455899999999999999999999998888776442 45567777777766 455666666
Q ss_pred HHHHhh---cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCC
Q 015129 272 DLYETL---AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 272 ~~~~~~---~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
.++... .++|+||||+++..|+.+.+.|+..++++..+||+.++.+|..+++.|++|+..|||||+++++|+|+|++
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 666654 56799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhhhc
Q 015129 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 412 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
++||+|++|.+.++|+||+||+||.|+.|.+++|++..+......+.+.++.....++..+.++
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~ 474 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEY 474 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999877654
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.5e-61 Score=461.07 Aligned_cols=378 Identities=33% Similarity=0.509 Sum_probs=336.6
Q ss_pred CchhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC-----CCc
Q 015129 34 SYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----LVQ 108 (413)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~~~ 108 (413)
....+..+|+++++++.+.+.|.+.||..|+++|.++|+.+++|+++++++|||||||++|+++++..+... ..+
T Consensus 124 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~g 203 (545)
T PTZ00110 124 NVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDG 203 (545)
T ss_pred CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCC
Confidence 345678899999999999999999999999999999999999999999999999999999999988766432 235
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEe
Q 015129 109 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVL 188 (413)
Q Consensus 109 ~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~ 188 (413)
+.+||++||++|+.|+.+.+.++....++.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||+
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lVi 283 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVL 283 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEe
Confidence 68999999999999999999999888888899999998877777777788999999999999999988888899999999
Q ss_pred ccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcC-CCEEEEecCCc-ccccCeEEEEEEeccccch
Q 015129 189 DEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMN-KPVRILVKRDE-LTLEGIKQFYVNVEKEEWK 266 (413)
Q Consensus 189 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 266 (413)
||||++.+.+|...+..++..+++..|++++|||++.+...+...++. .+..+...... ....++.+.+..... ..+
T Consensus 284 DEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~-~~k 362 (545)
T PTZ00110 284 DEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE-HEK 362 (545)
T ss_pred ehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec-hhH
Confidence 999999999999999999999999999999999999988888887775 45655554332 233456666555443 346
Q ss_pred HHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCC
Q 015129 267 LETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 267 ~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
...+..++... ..+++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|
T Consensus 363 ~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGID 442 (545)
T PTZ00110 363 RGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLD 442 (545)
T ss_pred HHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCC
Confidence 66676766654 4679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhhhc
Q 015129 345 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 412 (413)
Q Consensus 345 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+|++++||+++.|.+..+|+||+||+||.|+.|.+++|+++++...+..+.+.++....++|++|.++
T Consensus 443 i~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~ 510 (545)
T PTZ00110 443 VKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKL 510 (545)
T ss_pred cccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998875
No 5
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.4e-61 Score=452.49 Aligned_cols=371 Identities=31% Similarity=0.467 Sum_probs=331.3
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC-------CCceeE
Q 015129 39 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-------LVQCQA 111 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~ 111 (413)
..+|++++|++.+.++|.+.||..|+|+|.++++.+++|+|++++||||||||++|++++++.+... ..++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 4689999999999999999999999999999999999999999999999999999999998877532 124689
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccc
Q 015129 112 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEA 191 (413)
Q Consensus 112 liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~ 191 (413)
||++|+++|+.|+.+.+..+....++.+..++|+.....+...+..+++|+|+||+.+.+++....+.+.+++++|+|||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999988899999999998877777777778899999999999999888888999999999999
Q ss_pred hHHhccCcHHHHHHHHhhCCC--CceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHH
Q 015129 192 DEMLSRGFKDQIYDIFQLLPA--KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLET 269 (413)
Q Consensus 192 h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (413)
|++.+.++...+..++..++. ..+.+++|||++..........+..+..+...........+.+.+... ....+...
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~-~~~~k~~~ 245 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP-SNEEKMRL 245 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC-CHHHHHHH
Confidence 999999999999999988874 456789999999988888888888887777665555555666555443 33457788
Q ss_pred HHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCc
Q 015129 270 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 270 l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
+..++......++||||++++.++.+++.|...|..+..+||++++.+|..+++.|++|+++|||||+++++|+|+|+++
T Consensus 246 l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~ 325 (423)
T PRK04837 246 LQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVT 325 (423)
T ss_pred HHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccC
Confidence 88888877778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhh
Q 015129 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVA 410 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (413)
+||++++|.+...|+||+||+||.|+.|.+++|+.+.+...+..++++++...+..+.+..
T Consensus 326 ~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 386 (423)
T PRK04837 326 HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYDSD 386 (423)
T ss_pred EEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCChh
Confidence 9999999999999999999999999999999999999999999999999888765554433
No 6
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.6e-60 Score=451.28 Aligned_cols=363 Identities=37% Similarity=0.614 Sum_probs=332.7
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015129 40 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
.+|+++++++.+.+.+.+.||..|+|+|.++++.+.+|++++++||||||||++|++++++.+.......+++|++||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 57999999999999999999999999999999999999999999999999999999999998876655668999999999
Q ss_pred HHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC
Q 015129 120 LAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG 198 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~ 198 (413)
|+.|+.+.++.+.... +..+..++|+.+...+...+..+++|+|+||+.+.+++..+...+.++++||+||||++.+.+
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC
Confidence 9999999999887654 688999999998877777777889999999999999999888889999999999999999999
Q ss_pred cHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhc
Q 015129 199 FKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLA 278 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (413)
+...+..++..++...|++++|||+++....+...++..+..+...... ....+.+.+....... +.+.+..++....
T Consensus 164 ~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~ 241 (460)
T PRK11776 164 FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDE-RLPALQRLLLHHQ 241 (460)
T ss_pred cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHH-HHHHHHHHHHhcC
Confidence 9999999999999999999999999999988888888888877765543 3455777777666544 8888888888877
Q ss_pred ccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCC
Q 015129 279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 358 (413)
Q Consensus 279 ~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~ 358 (413)
.+++||||++++.++.+++.|...+..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~ 321 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELAR 321 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhcccccc
Q 015129 359 QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 404 (413)
Q Consensus 359 s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
+...|+||+||+||.|..|.+++++.+.+...+..+++.++..++.
T Consensus 322 ~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 322 DPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred CHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 9999999999999999999999999999999999999998876553
No 7
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.8e-60 Score=448.77 Aligned_cols=363 Identities=36% Similarity=0.610 Sum_probs=329.1
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCC------CceeEEEE
Q 015129 41 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL------VQCQALVL 114 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~liv 114 (413)
+|++++|++.+.+.|.+.|+..|+++|.++++.+++|+++++++|||||||++|++++++.+.... ...++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 688999999999999999999999999999999999999999999999999999999998875432 22479999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHH
Q 015129 115 APTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 194 (413)
Q Consensus 115 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~ 194 (413)
+||++|+.|+.+.+..+....++.+..++|+.....+...+...++|+|+||++|.+++......++++++||+||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999888889999999998877776667778999999999999999888888999999999999999
Q ss_pred hccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHH
Q 015129 195 LSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY 274 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (413)
.+.++...+..++..++...|++++|||++.+...+...++..+..+...........+.+.+..... ..+.+.+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK-KRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-HHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888888777766555555667766665544 34667777777
Q ss_pred HhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEc
Q 015129 275 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 354 (413)
Q Consensus 275 ~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 354 (413)
......++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++
T Consensus 241 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~ 320 (456)
T PRK10590 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320 (456)
T ss_pred HcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEe
Confidence 76667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhcccccc
Q 015129 355 DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 404 (413)
Q Consensus 355 ~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
+.|.+..+|+||+||+||.|..|.+++++...|...+..+++.++..++.
T Consensus 321 ~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~ 370 (456)
T PRK10590 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPR 370 (456)
T ss_pred CCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999887743
No 8
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-60 Score=450.67 Aligned_cols=369 Identities=45% Similarity=0.708 Sum_probs=342.1
Q ss_pred chhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHcccc--CCCceeEE
Q 015129 35 YDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY--GLVQCQAL 112 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~--~~~~~~~l 112 (413)
.......|.++++++.+.+++.+.||..|+|+|..++|.++.|++++..|+||||||++|++|+++.+.. ......+|
T Consensus 24 ~~~~~~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aL 103 (513)
T COG0513 24 EEKTPPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSAL 103 (513)
T ss_pred cccccCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceE
Confidence 3333467999999999999999999999999999999999999999999999999999999999999773 22221299
Q ss_pred EEcCcHHHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccc
Q 015129 113 VLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEA 191 (413)
Q Consensus 113 iv~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~ 191 (413)
|++||++||.|+++.+..+.... ++.+..++||.....+...+..+++|+|+||.++++++..+.+.++.+.++|+|||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 99999999999999999999888 78999999999988887777778999999999999999999999999999999999
Q ss_pred hHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcc--cccCeEEEEEEeccccchHHH
Q 015129 192 DEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL--TLEGIKQFYVNVEKEEWKLET 269 (413)
Q Consensus 192 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 269 (413)
+++++.+|...+..+...++...|++++|||++.....+...++.+|..+....... ....+.+.+..+.....+.+.
T Consensus 184 DrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~ 263 (513)
T COG0513 184 DRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263 (513)
T ss_pred hhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999998777775444 788999999999876679999
Q ss_pred HHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCc
Q 015129 270 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 270 l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
+..+++.....++||||++.+.++.++..|...|+.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|+++
T Consensus 264 L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~ 343 (513)
T COG0513 264 LLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVS 343 (513)
T ss_pred HHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccc
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccC-cHHHHHHHHHHhccccc
Q 015129 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIE 403 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 403 (413)
+||+||.|.++..|+||+||+||.|..|.+++|+++. +...+..+++.++...+
T Consensus 344 ~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 344 HVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred eeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999986 89999999999876633
No 9
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=6.1e-60 Score=443.46 Aligned_cols=384 Identities=72% Similarity=1.123 Sum_probs=347.0
Q ss_pred CCcCCchhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCce
Q 015129 30 DFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQC 109 (413)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~ 109 (413)
.....+.+...+|+++++++.+.+.+.+.|+..|+|+|.++++.+.+|+++++.+|||||||++|++++++.+.....+.
T Consensus 18 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~ 97 (401)
T PTZ00424 18 TIESNYDEIVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNAC 97 (401)
T ss_pred ccccccccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCc
Confidence 34456677789999999999999999999999999999999999999999999999999999999999998876655566
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEec
Q 015129 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLD 189 (413)
Q Consensus 110 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~D 189 (413)
++||++|+++|+.|+.+.+..+....+..+..+.|+.....+......+++|+|+||+.+.+.+......++++++||+|
T Consensus 98 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViD 177 (401)
T PTZ00424 98 QALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILD 177 (401)
T ss_pred eEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEe
Confidence 99999999999999999999988777888888888887776666666778999999999999988877888999999999
Q ss_pred cchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHH
Q 015129 190 EADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLET 269 (413)
Q Consensus 190 E~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (413)
|+|++.+.++...+..++..+++..|++++|||+++........++..+..............+.+++........+...
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDT 257 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHH
Confidence 99999998888889999999999999999999999988888888888887776666666667777777777665667777
Q ss_pred HHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCc
Q 015129 270 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 270 l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
+..+++.....++||||++++.++.+++.|...+..+..+||+++..+|..+++.|++|+++|||||+++++|+|+|+++
T Consensus 258 l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~ 337 (401)
T PTZ00424 258 LCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVS 337 (401)
T ss_pred HHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCC
Confidence 88887777778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhhhcC
Q 015129 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 413 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
+||+++.|.+...|+||+||+||.|+.|.|++++++.+...+..+++.++...++.++...+.|
T Consensus 338 ~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 401 (401)
T PTZ00424 338 LVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEVADYL 401 (401)
T ss_pred EEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999888766543
No 10
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=7.3e-60 Score=450.97 Aligned_cols=375 Identities=32% Similarity=0.530 Sum_probs=333.3
Q ss_pred chhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHcccc-------CCC
Q 015129 35 YDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-------GLV 107 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-------~~~ 107 (413)
...+..+|+++++++.+.+.|.+.||..|+|+|.++++.+++|+++++++|||||||++|+++++..+.. ...
T Consensus 116 ~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~ 195 (518)
T PLN00206 116 VPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQR 195 (518)
T ss_pred CCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccC
Confidence 4578899999999999999999999999999999999999999999999999999999999999877642 224
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEE
Q 015129 108 QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFV 187 (413)
Q Consensus 108 ~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV 187 (413)
++++||++||++|+.|+.+.++.+....++.+..+.|+.....+...+..+++|+|+||++|.+++......++++++||
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lV 275 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLV 275 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEE
Confidence 56899999999999999999999988888888888888887776666677899999999999999988888899999999
Q ss_pred eccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchH
Q 015129 188 LDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKL 267 (413)
Q Consensus 188 ~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
+||||++.+.+|...+..++..++ ..|++++|||++.....+...+...+..+...........+.+.+...... .+.
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~-~k~ 353 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETK-QKK 353 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccch-hHH
Confidence 999999999999999999988875 679999999999998888888888887777766555555666666655543 355
Q ss_pred HHHHHHHHhhc--ccceEEEEccHHHHHHHHHHhhh-CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCC
Q 015129 268 ETLCDLYETLA--ITQSVIFVNTRRKVDWLTDKMRS-RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 268 ~~l~~~~~~~~--~~~~lif~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
..+.+++.... .+++||||+++..++.+++.|.. .+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|
T Consensus 354 ~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiD 433 (518)
T PLN00206 354 QKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVD 433 (518)
T ss_pred HHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCC
Confidence 56666665432 35899999999999999999975 5889999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhhh
Q 015129 345 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 411 (413)
Q Consensus 345 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (413)
+|++++||+++.|.+..+|+||+||+||.|..|.+++|+...+...+..+.+.++.....+|++|++
T Consensus 434 ip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 500 (518)
T PLN00206 434 LLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELAN 500 (518)
T ss_pred cccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999998876
No 11
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1e-59 Score=454.55 Aligned_cols=367 Identities=39% Similarity=0.610 Sum_probs=335.8
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcH
Q 015129 39 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 118 (413)
..+|.+++|++.+.++|.+.||..|+|+|.++++.+++|+++++.||||||||++|.+++++.+......+++||++||+
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 45699999999999999999999999999999999999999999999999999999999998887665567999999999
Q ss_pred HHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhcc
Q 015129 119 ELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR 197 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~ 197 (413)
+|+.|+++.+..+.... ++.+..++|+.+...+...+..+++|+|+||+++.+++....+.++++++||+||||++.+.
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~ 164 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM 164 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhc
Confidence 99999999999887654 78889999998887777777778999999999999999988888999999999999999999
Q ss_pred CcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhh
Q 015129 198 GFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL 277 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
++...+..++..++...|++++|||++.........++.++..+.+.......+.+.+.+..+.. ..+.+.+..++...
T Consensus 165 gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~-~~k~~~L~~~L~~~ 243 (629)
T PRK11634 165 GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVRFLEAE 243 (629)
T ss_pred ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech-hhHHHHHHHHHHhc
Confidence 99999999999999999999999999998888889999988877776666666677777766554 34778888888877
Q ss_pred cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCC
Q 015129 278 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 357 (413)
...++||||+++..+..+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.|
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P 323 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIP 323 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCC
Q 015129 358 TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 406 (413)
Q Consensus 358 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (413)
.+...|+||+||+||.|+.|.+++++.+.+...++.+++.++..++++.
T Consensus 324 ~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~ 372 (629)
T PRK11634 324 MDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVE 372 (629)
T ss_pred CCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceec
Confidence 9999999999999999999999999999999999999999888876654
No 12
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.9e-59 Score=442.85 Aligned_cols=364 Identities=33% Similarity=0.542 Sum_probs=331.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC----CCceeEEEEcC
Q 015129 41 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG----LVQCQALVLAP 116 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~liv~P 116 (413)
+|+++++++.+.+.+.+.||..|+++|.++++.+++|+++++++|||+|||++|++++++.+... ...+++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 68999999999999999999999999999999999999999999999999999999999877532 22358999999
Q ss_pred cHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhc
Q 015129 117 TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 196 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~ 196 (413)
+++|+.|+.+.+..+....++.+..++|+.........+...++|+|+||++|.+++....+.+.++++||+||||++.+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 99999999999999998889999999999888777777777889999999999999998888889999999999999999
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEEeeCCH-hHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHH
Q 015129 197 RGFKDQIYDIFQLLPAKVQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYE 275 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (413)
.++...+..+....+...|++++|||++. ....+...++..+..+...........+.+.+........+.+.+..+++
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 241 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLK 241 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHh
Confidence 99999999999999888999999999985 46667777777887777766666666778887777766678888888888
Q ss_pred hhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEcc
Q 015129 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 276 ~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
....+++||||++++.++.+++.|+..+..+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+++
T Consensus 242 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 242 QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEEC
Confidence 76778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhcccccc
Q 015129 356 LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 404 (413)
Q Consensus 356 ~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
.|.+...|+||+||+||.|..|.+++++...|...+..+++++...+..
T Consensus 322 ~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 322 MPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred CCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999998877644
No 13
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.7e-59 Score=448.40 Aligned_cols=364 Identities=33% Similarity=0.520 Sum_probs=326.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC-------CCceeEEE
Q 015129 41 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-------LVQCQALV 113 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~li 113 (413)
+|++++|++.+.+.|.+.||..|+|+|.++++.+++|+|+++.+|||||||++|++++++.+... ...+++||
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLI 89 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALI 89 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 69999999999999999999999999999999999999999999999999999999999877432 12368999
Q ss_pred EcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcC-CCCCCcceEEEeccch
Q 015129 114 LAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 192 (413)
Q Consensus 114 v~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~-~~~~~~~~~iV~DE~h 192 (413)
++|+++|+.|+++.+.++....++.+..++|+.....+...+..+++|+|+||++|.+++... .+.+..+++||+||||
T Consensus 90 l~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh 169 (572)
T PRK04537 90 LAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169 (572)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH
Confidence 999999999999999999988899999999999887777777778899999999999988764 4667889999999999
Q ss_pred HHhccCcHHHHHHHHhhCCC--CceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHH
Q 015129 193 EMLSRGFKDQIYDIFQLLPA--KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETL 270 (413)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~--~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 270 (413)
++.+.++...+..++..++. ..|++++|||++.........++..+..+...........+.+.+.... ...+...+
T Consensus 170 ~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~-~~~k~~~L 248 (572)
T PRK04537 170 RMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA-DEEKQTLL 248 (572)
T ss_pred HHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecC-HHHHHHHH
Confidence 99999999999999998876 6799999999999888888888888776666555555556666655443 35577778
Q ss_pred HHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcE
Q 015129 271 CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 350 (413)
Q Consensus 271 ~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~ 350 (413)
..++......++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+++|||||+++++|||+|++++
T Consensus 249 ~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~ 328 (572)
T PRK04537 249 LGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKY 328 (572)
T ss_pred HHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCE
Confidence 88887777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccC
Q 015129 351 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL 405 (413)
Q Consensus 351 vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (413)
||+|+.|.+...|+||+||+||.|..|.+++|+.+.+...+..++++++..++..
T Consensus 329 VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~ 383 (572)
T PRK04537 329 VYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVE 383 (572)
T ss_pred EEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCcc
Confidence 9999999999999999999999999999999999999999999999988776433
No 14
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-57 Score=434.11 Aligned_cols=365 Identities=33% Similarity=0.519 Sum_probs=325.4
Q ss_pred hhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCC-------Cce
Q 015129 37 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL-------VQC 109 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~-------~~~ 109 (413)
+....|.++++++.+.+.|.+.|+..|+++|.++++.+.+|+|+++.+|||||||++|+++++..+.... ..+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 4455788999999999999999999999999999999999999999999999999999999998876532 135
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH-HcCCcEEEEccHHHHHHHHcCCCCCCcceEEEe
Q 015129 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL-QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVL 188 (413)
Q Consensus 110 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~ 188 (413)
++||++||++|+.|+.+.++.+....++.+..++|+.+.......+ ...++|+|+||++|..++..+...++++++||+
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 8999999999999999999999888889999999987766554443 456899999999999998888888999999999
Q ss_pred ccchHHhccCcHHHHHHHHhhCCC--CceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccch
Q 015129 189 DEADEMLSRGFKDQIYDIFQLLPA--KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWK 266 (413)
Q Consensus 189 DE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (413)
||+|.+.+.++...+..++..++. ..|++++|||.+.+.......+...+..+...........+.+.+..... ..+
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~k 322 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG-SDK 322 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc-hhH
Confidence 999999999998889999888764 56999999999988888888888888877766655555556555554443 446
Q ss_pred HHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCC
Q 015129 267 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 267 ~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
...+..++......++||||++++.++.+++.|...+..+..+||+++..+|.++++.|++|++++||||+++++|+|++
T Consensus 323 ~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 323 YKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 77788888777778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhcccc
Q 015129 347 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVI 402 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (413)
++++||+++.|.+...|+||+||+||.|..|.+++++.++|...+..++++++..+
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999998876
No 15
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=6e-58 Score=404.70 Aligned_cols=364 Identities=34% Similarity=0.555 Sum_probs=339.9
Q ss_pred chhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC---------
Q 015129 35 YDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG--------- 105 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~--------- 105 (413)
.+.++.+|++.+|+..+++.+...|+..|+|+|+.+++..++++++|.++.||||||.+++++++..+...
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 56789999999999999999999999999999999999999999999999999999999999998777432
Q ss_pred CCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceE
Q 015129 106 LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKM 185 (413)
Q Consensus 106 ~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~ 185 (413)
..++.++++.||++|++|+.++-.+++..+++.++.+.||...+++.-.+..+|.|+|+||..|.+.+.+..+-++.+.+
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qcty 399 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTY 399 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCce
Confidence 34679999999999999999999999999999999999999988887778889999999999999999998889999999
Q ss_pred EEeccchHHhccCcHHHHHHHHhhCCCC-------------------------ceEEEEEeeCCHhHHHHHHHhcCCCEE
Q 015129 186 FVLDEADEMLSRGFKDQIYDIFQLLPAK-------------------------VQVGVFSATMPPEALEITRKFMNKPVR 240 (413)
Q Consensus 186 iV~DE~h~~~~~~~~~~~~~~~~~~~~~-------------------------~~~i~~SaT~~~~~~~~~~~~~~~~~~ 240 (413)
+|+||++++.+.+|...+..++..+|.. .|.+.+|||+++....+.+.++..|+.
T Consensus 400 vvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~ 479 (673)
T KOG0333|consen 400 VVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVV 479 (673)
T ss_pred EeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeE
Confidence 9999999999999999999999888631 689999999999999999999999999
Q ss_pred EEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHH
Q 015129 241 ILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDI 320 (413)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 320 (413)
+.........+.+.+.+..+...+ +...|..+++.....++|||+|+++.++.+++.|...|+.+..+||+-++++|+.
T Consensus 480 vtig~~gk~~~rveQ~v~m~~ed~-k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 480 VTIGSAGKPTPRVEQKVEMVSEDE-KRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred EEeccCCCCccchheEEEEecchH-HHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 999988888888888888777654 6899999999888889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhc
Q 015129 321 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 399 (413)
Q Consensus 321 ~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (413)
++..|++|..+|||||+++++|||+|++++||+|+.+.++.+|.||+||+||.|+.|.+++|+++.|...+..+.+.+.
T Consensus 559 aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 559 ALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALR 637 (673)
T ss_pred HHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887777766665
No 16
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-58 Score=404.44 Aligned_cols=360 Identities=35% Similarity=0.558 Sum_probs=334.4
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCC---ceeEEEEc
Q 015129 39 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV---QCQALVLA 115 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~liv~ 115 (413)
..+|.+++|+..+.+++..+||..|+|+|...+|..+-|++++.+|.||||||.+|++|++..+..... ..++||+|
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 568999999999999999999999999999999999999999999999999999999999999976543 35899999
Q ss_pred CcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHc-CCCCCCcceEEEeccchHH
Q 015129 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEM 194 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iV~DE~h~~ 194 (413)
||++|+.|.+...++++....+.+.++.||.+...+...+...+||+|+||++|.+++++ ..+.++++.++|+|||+++
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 999999999999999999999999999999999999999999999999999999999976 6678899999999999999
Q ss_pred hccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEecc--ccchHHHHHH
Q 015129 195 LSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK--EEWKLETLCD 272 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 272 (413)
++.+|...+..++..++.+.|.+++|||+.....++....+.+|+.+.+.......+.+.+-+....+ ...+...+..
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~ 419 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLAS 419 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887777777776654442 3345566677
Q ss_pred HHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEE
Q 015129 273 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 (413)
Q Consensus 273 ~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 352 (413)
++......+++||+.+.+.|.++.-.|--.|..+.-+||++++.+|.+.++.|++++++|||||+++++|+||+++..||
T Consensus 420 l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVI 499 (691)
T KOG0338|consen 420 LITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVI 499 (691)
T ss_pred HHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEE
Confidence 77777778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHh
Q 015129 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFY 398 (413)
Q Consensus 353 ~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~ 398 (413)
+|..|.+...|+||.||+.|.|+.|++++++.++|.+.++.+....
T Consensus 500 Ny~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 500 NYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred eccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999988887663
No 17
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-58 Score=382.70 Aligned_cols=371 Identities=40% Similarity=0.669 Sum_probs=351.4
Q ss_pred hccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCc
Q 015129 38 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 117 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~ 117 (413)
....|+++.|...+...+...|++.|.|+|.+++|..+.|++++..|..|+|||.+|++|+++.+......-++++++|+
T Consensus 83 kG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPt 162 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPT 162 (459)
T ss_pred cCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeec
Confidence 35678999999999999999999999999999999999999999999999999999999999999888777799999999
Q ss_pred HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhcc
Q 015129 118 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR 197 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~ 197 (413)
++||.|..+.+.++.+..++.+...+||++..++.-.+....+++|+||++++++..++--.++++.++|+|||+.+++.
T Consensus 163 relALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~ 242 (459)
T KOG0326|consen 163 RELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSV 242 (459)
T ss_pred chhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhch
Confidence 99999999999999999999999999999988887778888999999999999999999889999999999999999999
Q ss_pred CcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhh
Q 015129 198 GFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL 277 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
.|...+..++..+|...|+++.|||.|-....+..+++.+|..+.. -++..+.++.++|..+.. ..++..+..++.+.
T Consensus 243 ~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INL-M~eLtl~GvtQyYafV~e-~qKvhCLntLfskL 320 (459)
T KOG0326|consen 243 DFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINL-MEELTLKGVTQYYAFVEE-RQKVHCLNTLFSKL 320 (459)
T ss_pred hhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeeh-hhhhhhcchhhheeeech-hhhhhhHHHHHHHh
Confidence 9999999999999999999999999999999999999999976654 345777889999888776 45899999999999
Q ss_pred cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCC
Q 015129 278 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 357 (413)
.-...+|||||.+.++-+++.+.+.|..|.++|+.|.++.|.+++..|++|.++.||||+.+.+|+|++.+++||++|.|
T Consensus 321 qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfp 400 (459)
T KOG0326|consen 321 QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFP 400 (459)
T ss_pred cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhh
Q 015129 358 TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVA 410 (413)
Q Consensus 358 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (413)
.+.+.|.+|+||.||.|..|.++.+++-.|...+..++..++...+++|++..
T Consensus 401 k~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 401 KNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred CCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 99999999999999999999999999999999999999999999999997654
No 18
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4.1e-56 Score=390.91 Aligned_cols=358 Identities=31% Similarity=0.491 Sum_probs=324.0
Q ss_pred hhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCC----CceeEE
Q 015129 37 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL----VQCQAL 112 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~l 112 (413)
.....|+...|++...++++.+||..+++.|..+++.++.|++++..|-||||||+++++++++.+...+ .+-.++
T Consensus 79 ~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vl 158 (543)
T KOG0342|consen 79 TTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVL 158 (543)
T ss_pred hhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEE
Confidence 3355788899999999999999999999999999999999999999999999999999999999886543 344799
Q ss_pred EEcCcHHHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcC-CCCCCcceEEEecc
Q 015129 113 VLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDE 190 (413)
Q Consensus 113 iv~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~-~~~~~~~~~iV~DE 190 (413)
|+|||++|+.|.+.+.+++.... +..+..+.||.+.......+..+++|+|+||++|.+++.+. .+...+.+++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 99999999999999999998887 89999999999988888888889999999999999999874 44556678999999
Q ss_pred chHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCC-CEEEEecC--CcccccCeEEEEEEeccccchH
Q 015129 191 ADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNK-PVRILVKR--DELTLEGIKQFYVNVEKEEWKL 267 (413)
Q Consensus 191 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
|+++++.+|...+..+...++...|.+++|||.++...+.....+.. +..+.+.. ...+.+.+.+.|...+... ..
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~-~f 317 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS-RF 317 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc-hH
Confidence 99999999999999999999999999999999999998888777765 55554433 3455678888887776644 47
Q ss_pred HHHHHHHHhhcc-cceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCC
Q 015129 268 ETLCDLYETLAI-TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 268 ~~l~~~~~~~~~-~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
..+..+++++.. .|++|||++...+..+++.|+...++|..+||+.++..|..+...|.+.+-.||+||+++++|+|+|
T Consensus 318 ~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342|consen 318 SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCC
Confidence 888888887766 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHH
Q 015129 347 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 395 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 395 (413)
++++||++++|.++.+|+||+||+||.|..|.++.++.+.+...++.+.
T Consensus 398 ~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 398 DVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred CceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998887
No 19
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-56 Score=386.20 Aligned_cols=349 Identities=34% Similarity=0.555 Sum_probs=311.5
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCC----C-ceeEEE
Q 015129 41 SFDAMG--LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL----V-QCQALV 113 (413)
Q Consensus 41 ~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~----~-~~~~li 113 (413)
.|++++ |++++..++...||...||.|..++|.++.++++++.++||||||++|++|++..+.... + ..-+||
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 455554 569999999999999999999999999999999999999999999999999999983321 1 136899
Q ss_pred EcCcHHHHHHHHHHHHHhhcc-cCcEEEEEEcCcchHHHHHH-HHcCCcEEEEccHHHHHHHHcCC--CCCCcceEEEec
Q 015129 114 LAPTRELAQQIEKVMRALGDY-LGVKVHACVGGTSVREDQRI-LQAGVHVVVGTPGRVFDMLRRQS--LRPDYIKMFVLD 189 (413)
Q Consensus 114 v~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~iii~T~~~l~~~~~~~~--~~~~~~~~iV~D 189 (413)
|+||++|+.|+.+....+... .++++..+.||.+...+... ...+++|+|+||++|.+++.+.. +...++.++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 999999999999999988776 58899999999888776654 45678999999999999998744 344589999999
Q ss_pred cchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcc--cccCeEEEEEEeccccchH
Q 015129 190 EADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL--TLEGIKQFYVNVEKEEWKL 267 (413)
Q Consensus 190 E~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 267 (413)
||+++.+.+|...++.++..+|.+.+.-++|||...+..++....+.+|+.+.+..... .|..+...|..+.. ..+.
T Consensus 165 EADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a-~eK~ 243 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA-DEKL 243 (567)
T ss_pred chHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH-HHHH
Confidence 99999999999999999999999999999999999999999999999999988876655 77778877777766 5588
Q ss_pred HHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCC
Q 015129 268 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV 345 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~ 345 (413)
..+.+++.....+|+|||+++-..++.++..|... +..+..+||.|.+..|..+++.|.+..-.+|+||+++++|+|+
T Consensus 244 ~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDi 323 (567)
T KOG0345|consen 244 SQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDI 323 (567)
T ss_pred HHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCC
Confidence 89999999888899999999999999999988765 6789999999999999999999999888899999999999999
Q ss_pred CCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHH
Q 015129 346 QQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 390 (413)
Q Consensus 346 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 390 (413)
|++++||++|+|.++..|.||.||++|.|+.|.+++|+.+.+..+
T Consensus 324 p~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 324 PGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred CCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHH
Confidence 999999999999999999999999999999999999999955443
No 20
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-56 Score=374.99 Aligned_cols=369 Identities=37% Similarity=0.506 Sum_probs=330.5
Q ss_pred hccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCc
Q 015129 38 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 117 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~ 117 (413)
...+|..+|+++|+.+.+.++|+..|+|.|..++|.|++|++++=+|.||||||.++.+++++.+.....+..++|++||
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPT 84 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPT 84 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecch
Confidence 46789999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCC----CCCCcceEEEeccchH
Q 015129 118 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS----LRPDYIKMFVLDEADE 193 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~----~~~~~~~~iV~DE~h~ 193 (413)
++|+.|..+.|..+....++++..+.||.+.-.+...+...++++|+||+++.+++.... ..+.++.++|+|||+.
T Consensus 85 rELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADr 164 (442)
T KOG0340|consen 85 RELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADR 164 (442)
T ss_pred HHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhh
Confidence 999999999999999999999999999999888888888899999999999998887642 3356689999999999
Q ss_pred HhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCC--CEEEEecCCcccccCeEEEEEEeccccchHHHHH
Q 015129 194 MLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNK--PVRILVKRDELTLEGIKQFYVNVEKEEWKLETLC 271 (413)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (413)
+.+..|.+.+..+.+.+|...|.+++|||+.....+....-..+ ...+.........+.+.+.|..++. ..+--.+.
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~-~vkdaYLv 243 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSI-DVKDAYLV 243 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecch-hhhHHHHH
Confidence 99999999999999999999999999999987776655444443 3344444555666677777766655 33444455
Q ss_pred HHHHhh---cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCC
Q 015129 272 DLYETL---AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 272 ~~~~~~---~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
.++... ..+.++||+++..+++.++..|+..+..+..+|+.|++.+|...+.+|+++..+|||||+++++|+|+|.+
T Consensus 244 ~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V 323 (442)
T KOG0340|consen 244 HLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTV 323 (442)
T ss_pred HHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCce
Confidence 555443 45689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCc
Q 015129 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 407 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (413)
+.|++++.|.++.+|+||.||..|.|+.|.++.++++.|.+.+..+++..++...+.+.
T Consensus 324 ~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~ 382 (442)
T KOG0340|consen 324 ELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNK 382 (442)
T ss_pred eEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999887664
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-55 Score=392.43 Aligned_cols=374 Identities=34% Similarity=0.509 Sum_probs=342.2
Q ss_pred hhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCC---------
Q 015129 37 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--------- 107 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--------- 107 (413)
..+..|.+..+.+.+...++..++..|+|+|+.+++.+..|++++++|+||||||.++++|++..+.....
T Consensus 71 ~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~ 150 (482)
T KOG0335|consen 71 PHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGG 150 (482)
T ss_pred CCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCC
Confidence 44568888889999999999999999999999999999999999999999999999999999998865422
Q ss_pred -ceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEE
Q 015129 108 -QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMF 186 (413)
Q Consensus 108 -~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~i 186 (413)
.+.++|++||++|+.|.+++.+++....++.....+|+.+...+......+|+|+|+||++|.++++.+...+.+++++
T Consensus 151 ~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~ 230 (482)
T KOG0335|consen 151 VYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFL 230 (482)
T ss_pred CCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEE
Confidence 4799999999999999999999999888999999999988888888888999999999999999999999999999999
Q ss_pred EeccchHHhc-cCcHHHHHHHHhhCCC----CceEEEEEeeCCHhHHHHHHHhcCC-CEEEEecCCcccccCeEEEEEEe
Q 015129 187 VLDEADEMLS-RGFKDQIYDIFQLLPA----KVQVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFYVNV 260 (413)
Q Consensus 187 V~DE~h~~~~-~~~~~~~~~~~~~~~~----~~~~i~~SaT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 260 (413)
|+|||+++.+ .+|...+.+++....- ..|.+++|||.+.++..+...++.+ ...+.+.......+++.+.+..+
T Consensus 231 vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V 310 (482)
T KOG0335|consen 231 VLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFV 310 (482)
T ss_pred EecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeee
Confidence 9999999999 9999999999987753 7899999999999988877777776 67777778888889999999888
Q ss_pred ccccchHHHHHHHHHhhc----cc-----ceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCc
Q 015129 261 EKEEWKLETLCDLYETLA----IT-----QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR 331 (413)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~----~~-----~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 331 (413)
.... +...|.+++.... .+ +++|||.+++.+..+...|...+..+..+||..++.+|.+.++.|++|++.
T Consensus 311 ~~~~-kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p 389 (482)
T KOG0335|consen 311 NEME-KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAP 389 (482)
T ss_pred cchh-hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcc
Confidence 8755 5555555554322 23 899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhhh
Q 015129 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 411 (413)
Q Consensus 332 vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (413)
+||||+++++|+|+|+++|||+|+.|.+..+|+||+||+||.|+.|.++.|+...+....+.+.+.+.....++|.+|.+
T Consensus 390 vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 390 VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
No 22
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-55 Score=387.70 Aligned_cols=368 Identities=30% Similarity=0.466 Sum_probs=333.4
Q ss_pred hccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCC----CceeEEE
Q 015129 38 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL----VQCQALV 113 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~li 113 (413)
....|++++|+....++|+..+|..++.+|+.+++..++|++++-.|-||||||+++++|+++.+.... .+.-+||
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalI 146 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALI 146 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEE
Confidence 345899999999999999999999999999999999999999999999999999999999999997643 3447999
Q ss_pred EcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHc-CCCCCCcceEEEeccch
Q 015129 114 LAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 192 (413)
Q Consensus 114 v~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iV~DE~h 192 (413)
|.||++||.|+++.+.+.+...++..+.+.||.+.......+ ++.+|+||||++|+.++.. -.+..+++.++|+|||+
T Consensus 147 ISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD 225 (758)
T KOG0343|consen 147 ISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD 225 (758)
T ss_pred ecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH
Confidence 999999999999999999999999999999999976665554 4689999999999999875 45667889999999999
Q ss_pred HHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecC--CcccccCeEEEEEEeccccchHHHH
Q 015129 193 EMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKR--DELTLEGIKQFYVNVEKEEWKLETL 270 (413)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l 270 (413)
++++.+|...+..++..+|...|.+++|||......++.+..+.+|..+.+.. ....|.++.++|..++. ..+++.|
T Consensus 226 R~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l-~~Ki~~L 304 (758)
T KOG0343|consen 226 RMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL-EDKIDML 304 (758)
T ss_pred HHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh-hhHHHHH
Confidence 99999999999999999999999999999999999999999999998887763 35678899999988877 4599999
Q ss_pred HHHHHhhcccceEEEEccHHHHHHHHHHhhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCC
Q 015129 271 CDLYETLAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 271 ~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
..++..+...+.|||+.|.+++..+++.|++. |+.+..+||.|++..|.++.+.|.....-||+||+++++|+|+|.+
T Consensus 305 ~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaV 384 (758)
T KOG0343|consen 305 WSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAV 384 (758)
T ss_pred HHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCccc
Confidence 99999999999999999999999999999875 7889999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCc-HHHHHHHHHHhccccccCCch
Q 015129 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPSN 408 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 408 (413)
+|||.+|.|-++.+|+||.||+.|.+..|.+++++++.+ +.++..++... +...++..+
T Consensus 385 dwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~i~ 444 (758)
T KOG0343|consen 385 DWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIKID 444 (758)
T ss_pred ceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhccC
Confidence 999999999999999999999999999999999999998 66666666554 555555443
No 23
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-55 Score=374.79 Aligned_cols=383 Identities=74% Similarity=1.099 Sum_probs=362.0
Q ss_pred CCCCcCCchhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCC
Q 015129 28 GQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV 107 (413)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~ 107 (413)
+..+.++|.+...+|++++|.+.+.+.++..||++|+.+|+.|+..+.+|.|+.+.+++|+|||.++..++++.+.....
T Consensus 14 ~~~iesn~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~k 93 (397)
T KOG0327|consen 14 EGVIESNWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVK 93 (397)
T ss_pred cccccccHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchH
Confidence 55567789999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchH-HHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEE
Q 015129 108 QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMF 186 (413)
Q Consensus 108 ~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~i 186 (413)
...+++++|+++|+.|.......++...+.++..+.|+.+.. +........++|+++||+...+.+....+....+.+.
T Consensus 94 e~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmf 173 (397)
T KOG0327|consen 94 ETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMF 173 (397)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEE
Confidence 779999999999999999999999888899999999988877 4445556678999999999999998888888889999
Q ss_pred EeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccch
Q 015129 187 VLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWK 266 (413)
Q Consensus 187 V~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (413)
|+||++.....++.+.+..+++.++++.|++++|||.+.+.....+.++.+|+.+.....+.+.+.+++++..+.... +
T Consensus 174 vlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k 252 (397)
T KOG0327|consen 174 VLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-K 252 (397)
T ss_pred eecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888866 8
Q ss_pred HHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCC
Q 015129 267 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 267 ~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
.+.+.++.+ .....+||||+++.+..+...|...+..+..+|+++.+.+|..+.+.|++|..++||+|..+++|+|+.
T Consensus 253 ~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~ 330 (397)
T KOG0327|consen 253 LDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQ 330 (397)
T ss_pred ccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchh
Confidence 999999888 556899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhhhcC
Q 015129 347 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 413 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
.++.|++|+.|.....|++|+||+||.|.+|.++.+++..+.+.++.++++|+..++++|++..+|+
T Consensus 331 ~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l~ 397 (397)
T KOG0327|consen 331 QVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADLL 397 (397)
T ss_pred hcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999998875
No 24
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-54 Score=373.17 Aligned_cols=373 Identities=32% Similarity=0.518 Sum_probs=337.1
Q ss_pred hhccCccc-CCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHcccc------CCCce
Q 015129 37 EVYDSFDA-MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY------GLVQC 109 (413)
Q Consensus 37 ~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~------~~~~~ 109 (413)
.+.-+|++ +.-.+.+...+.+.||.+|+|+|++|||.+++|++++-+|.||+|||++++++.+..+.. ...++
T Consensus 216 nP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p 295 (629)
T KOG0336|consen 216 NPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGP 295 (629)
T ss_pred CCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCC
Confidence 34445544 366788899999999999999999999999999999999999999999999988776643 24467
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEec
Q 015129 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLD 189 (413)
Q Consensus 110 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~D 189 (413)
.+|+++||++|+.|+.-+..++. ..++...++.|+.+...+...+..+.+|+|+||.+|.++...+..++..+.++|+|
T Consensus 296 ~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlD 374 (629)
T KOG0336|consen 296 GVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLD 374 (629)
T ss_pred ceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEec
Confidence 89999999999999988888764 34788889999999888888889999999999999999999999999999999999
Q ss_pred cchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCccc-ccCeEEEEEEeccccchHH
Q 015129 190 EADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT-LEGIKQFYVNVEKEEWKLE 268 (413)
Q Consensus 190 E~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 268 (413)
||+++++.+|..++.+++-..++..|++..|||++.....+...|+.+|..+.+...... ...+++.+ .+.....+..
T Consensus 375 EADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~~k~~ 453 (629)
T KOG0336|consen 375 EADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDSEKLE 453 (629)
T ss_pred chhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccHHHHH
Confidence 999999999999999999999999999999999999999999999999988887665443 35566666 5666677888
Q ss_pred HHHHHHHhh-cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCC
Q 015129 269 TLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ 347 (413)
Q Consensus 269 ~l~~~~~~~-~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 347 (413)
.+..+++.. +..|+||||.++..|+.+...|.-.|+....+||+-.+.+|+..++.|++|+.+|||+|+.+++|+|+++
T Consensus 454 ~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~D 533 (629)
T KOG0336|consen 454 IVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPD 533 (629)
T ss_pred HHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchh
Confidence 888888766 4469999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhhh
Q 015129 348 VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 411 (413)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (413)
++||++||.|.+.++|+||+||+||.|+.|.++++++..|-.+...+.+.|.....++|++|.+
T Consensus 534 iTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~ 597 (629)
T KOG0336|consen 534 ITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVR 597 (629)
T ss_pred cceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998764
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-54 Score=372.44 Aligned_cols=362 Identities=31% Similarity=0.453 Sum_probs=321.1
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHcccc------CCCceeEEE
Q 015129 40 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY------GLVQCQALV 113 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~------~~~~~~~li 113 (413)
.+|++++|++++.+++.+.|+..|+-+|+.++|.+++|++++..|-||||||.+|++|+++.+.. +..++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 79999999999999999999999999999999999999999999999999999999999998854 234568999
Q ss_pred EcCcHHHHHHHHHHHHHhhcccC--cEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCC-CCCCcceEEEecc
Q 015129 114 LAPTRELAQQIEKVMRALGDYLG--VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS-LRPDYIKMFVLDE 190 (413)
Q Consensus 114 v~P~~~l~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~-~~~~~~~~iV~DE 190 (413)
++||++|++|.+..+.++....+ +++.-+..+.+.......+...++|+|+||..+..++..+. .....+.++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999988766553 34444444445455556777889999999999999998876 5567789999999
Q ss_pred chHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCccc-ccCeEEEEEEeccccchHHH
Q 015129 191 ADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT-LEGIKQFYVNVEKEEWKLET 269 (413)
Q Consensus 191 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 269 (413)
|+.+...+|.+.+..+...+|...|.++||||...++..+-+.++.+|+.......+.. +.++.+++.... ...+.-.
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs-e~DKfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS-EEDKFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec-cchhHHH
Confidence 99999999999999999999999999999999999999999999999998887666554 456777777766 5667777
Q ss_pred HHHHHH-hhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC----------
Q 015129 270 LCDLYE-TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL---------- 338 (413)
Q Consensus 270 l~~~~~-~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~---------- 338 (413)
+..+++ +.-.+|.|||+|+...+.++.-.|++.|+..++++|+++...|--++++|+.|-++++|||+.
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 777776 446689999999999999999999999999999999999999999999999999999999991
Q ss_pred -------------------------CCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHH
Q 015129 339 -------------------------LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 393 (413)
Q Consensus 339 -------------------------~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~ 393 (413)
.++|||+.++.+|+++|.|.+...|+||+||++|.+++|.+++|+.+.+......
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKES 417 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhH
Confidence 5789999999999999999999999999999999999999999999999887778
Q ss_pred HHHHhcccc
Q 015129 394 IQKFYNVVI 402 (413)
Q Consensus 394 ~~~~~~~~~ 402 (413)
++..+...+
T Consensus 418 le~~~~d~~ 426 (569)
T KOG0346|consen 418 LESILKDEN 426 (569)
T ss_pred HHHHHhhHH
Confidence 877777654
No 26
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-53 Score=371.38 Aligned_cols=381 Identities=32% Similarity=0.473 Sum_probs=357.3
Q ss_pred cCCchhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC-----C
Q 015129 32 FTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----L 106 (413)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~ 106 (413)
..+...+..+|+.+++++.+..++.+..|.+|+|.|.++++..+.|++++=.|-||||||.+++.+++..+... .
T Consensus 215 g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g 294 (731)
T KOG0339|consen 215 GSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPG 294 (731)
T ss_pred cCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCC
Confidence 34577889999999999999999999999999999999999999999999999999999999999988877532 3
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEE
Q 015129 107 VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMF 186 (413)
Q Consensus 107 ~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~i 186 (413)
.++-.||+|||++|+.|++.+++++++.++++++.++||....++.+.+..++.|+||||++|.+++.-+..++.++.++
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 46789999999999999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred EeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccch
Q 015129 187 VLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWK 266 (413)
Q Consensus 187 V~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (413)
|+||++++.+.+|..++..|...+++..|.+++|||.+..+..+.+.++..|+.+.........+.+.+.+..++....+
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~K 454 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKK 454 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHH
Confidence 99999999999999999999999999999999999999999999999999998888777667778899999999988888
Q ss_pred HHHHHH-HHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCC
Q 015129 267 LETLCD-LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV 345 (413)
Q Consensus 267 ~~~l~~-~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~ 345 (413)
+..+.. +......+++|+|+.-...++.+...|+..++++..+||++.+.+|.+++..|+.+...||++|+...+|+|+
T Consensus 455 l~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI 534 (731)
T KOG0339|consen 455 LNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDI 534 (731)
T ss_pred HHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCc
Confidence 876655 4455577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhhhc
Q 015129 346 QQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 412 (413)
Q Consensus 346 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+.+..||++|...++..+.||+||.||.|..|..|+++++.|.+..-.+.+.|......+|..+.||
T Consensus 535 ~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dl 601 (731)
T KOG0339|consen 535 PSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDL 601 (731)
T ss_pred cccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998876
No 27
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-53 Score=374.09 Aligned_cols=359 Identities=29% Similarity=0.470 Sum_probs=303.7
Q ss_pred ccCcccCCCCHHHHHHHHH-CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHcccc------CCCceeE
Q 015129 39 YDSFDAMGLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY------GLVQCQA 111 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~------~~~~~~~ 111 (413)
...|..+||++.+.+.|+. +++..|+.+|.+++|.+++|++++|.++||||||++|++|+.+.+.. ...++-+
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~A 214 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYA 214 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceE
Confidence 4578999999999999975 79999999999999999999999999999999999999999998854 3446789
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcccCcEE-EEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHc-CCCCCCcceEEEec
Q 015129 112 LVLAPTRELAQQIEKVMRALGDYLGVKV-HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLD 189 (413)
Q Consensus 112 liv~P~~~l~~q~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iV~D 189 (413)
||++|||+|+.|.++.+.++...+.+-| ..+.||.....+...+..+++|+|+||++|.+++.+ +.+.+++++.+|+|
T Consensus 215 LVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlD 294 (708)
T KOG0348|consen 215 LVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLD 294 (708)
T ss_pred EEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEec
Confidence 9999999999999999999988765544 457788888888888899999999999999999986 66778889999999
Q ss_pred cchHHhccCcHHHHHHHHhhCC-------------CCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecC-----------
Q 015129 190 EADEMLSRGFKDQIYDIFQLLP-------------AKVQVGVFSATMPPEALEITRKFMNKPVRILVKR----------- 245 (413)
Q Consensus 190 E~h~~~~~~~~~~~~~~~~~~~-------------~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~----------- 245 (413)
|++++.+.+|...+..|+..+. ...|.+++|||+......+...-+.+|+.+..+.
T Consensus 295 EaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a 374 (708)
T KOG0348|consen 295 EADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKA 374 (708)
T ss_pred chhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhh
Confidence 9999999999999998887762 1367889999999888777777777777665211
Q ss_pred --------------CcccccCeEEEEEEeccccchHHHH----HHHHHhhcccceEEEEccHHHHHHHHHHhhhC-----
Q 015129 246 --------------DELTLEGIKQFYVNVEKEEWKLETL----CDLYETLAITQSVIFVNTRRKVDWLTDKMRSR----- 302 (413)
Q Consensus 246 --------------~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~----- 302 (413)
....|+++.+.|..+++.. ++-.| ....+.....|+|||+.+.+.++.-+..|.+.
T Consensus 375 ~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKL-RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~ 453 (708)
T KOG0348|consen 375 VQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKL-RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHL 453 (708)
T ss_pred hhhcCCcccccccccccCcHHhhhceEecCCch-hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccc
Confidence 0123556677777777644 33333 33334445569999999999999888887542
Q ss_pred -----------------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHH
Q 015129 303 -----------------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 365 (413)
Q Consensus 303 -----------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q 365 (413)
+..+..+||+|++++|..+++.|...+-.||+||+++++|+|+|.+++||.|++|.+.++|+|
T Consensus 454 e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylH 533 (708)
T KOG0348|consen 454 EGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLH 533 (708)
T ss_pred ccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHH
Confidence 355788999999999999999999988889999999999999999999999999999999999
Q ss_pred hhhhccCCCCcceEEEEeccCcHHHHHHHHHHh
Q 015129 366 RIGRSGRFGRKGVAINFVTRDDERMLFDIQKFY 398 (413)
Q Consensus 366 ~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~ 398 (413)
|+||+.|.|..|.++.|+.+.+.+++..+...-
T Consensus 534 RvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 534 RVGRTARAGEKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred HhhhhhhccCCCceEEEecccHHHHHHHHHhhc
Confidence 999999999999999999999998776665443
No 28
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.8e-51 Score=403.52 Aligned_cols=352 Identities=20% Similarity=0.254 Sum_probs=279.0
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHH
Q 015129 46 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIE 125 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~ 125 (413)
.+++.+.+.|.+.|+.+|+++|.++++.+.+|+|+++.+|||||||++|++|+++.+... ++.++||++|+++|+.|+.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~q~~ 98 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAADQL 98 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999999988654 3459999999999999999
Q ss_pred HHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHc----CCCCCCcceEEEeccchHHhccCcHH
Q 015129 126 KVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR----QSLRPDYIKMFVLDEADEMLSRGFKD 201 (413)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~----~~~~~~~~~~iV~DE~h~~~~~~~~~ 201 (413)
+.++++. ..++++..++|+...... .....+++|+|+||+++...+.. +...++++++||+||+|.+.+ .+..
T Consensus 99 ~~l~~l~-~~~i~v~~~~Gdt~~~~r-~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~ 175 (742)
T TIGR03817 99 RAVRELT-LRGVRPATYDGDTPTEER-RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGS 175 (742)
T ss_pred HHHHHhc-cCCeEEEEEeCCCCHHHH-HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHH
Confidence 9999986 447788888888775443 44456689999999998643321 112367789999999999865 3444
Q ss_pred HHHH-------HHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEecc------------
Q 015129 202 QIYD-------IFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK------------ 262 (413)
Q Consensus 202 ~~~~-------~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 262 (413)
.+.. +....+.++|++++|||.++.. .....+++.+..... .... +....+.....+.
T Consensus 176 ~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~i~-~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~ 252 (742)
T TIGR03817 176 HVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVAVT-EDGS-PRGARTVALWEPPLTELTGENGAPV 252 (742)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEEEC-CCCC-CcCceEEEEecCCcccccccccccc
Confidence 4333 3334456789999999998765 456677777754432 2211 1111222221111
Q ss_pred ----ccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhC--------CCeeEEecCCCCHHHHHHHHHHHhcCCC
Q 015129 263 ----EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR--------DHTVSATHGDMDQNTRDIIMREFRSGSS 330 (413)
Q Consensus 263 ----~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 330 (413)
...+.+.+..+++. +.++||||++++.++.+++.|+.. +..+..+||++++++|.++++.|++|++
T Consensus 253 r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i 330 (742)
T TIGR03817 253 RRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGEL 330 (742)
T ss_pred ccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCc
Confidence 11234455555553 569999999999999999988753 5678899999999999999999999999
Q ss_pred cEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEecc--CcHHHHHHHHHHhccccccCC
Q 015129 331 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR--DDERMLFDIQKFYNVVIEELP 406 (413)
Q Consensus 331 ~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 406 (413)
++||||+++++|||++++++||+++.|.+...|+||+||+||.|+.|.++++... .|...+..++++++...++..
T Consensus 331 ~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~~ 408 (742)
T TIGR03817 331 LGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEATV 408 (742)
T ss_pred eEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccce
Confidence 9999999999999999999999999999999999999999999999999988863 467778888888888776653
No 29
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.3e-53 Score=362.83 Aligned_cols=376 Identities=33% Similarity=0.551 Sum_probs=330.4
Q ss_pred chhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHcccc--------CC
Q 015129 35 YDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY--------GL 106 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~--------~~ 106 (413)
...++.+|.++.++..+.+.|++-|+..|+|+|.+.+|.+++|++.+=.|-||||||+++.++++..... ..
T Consensus 165 ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~ 244 (610)
T KOG0341|consen 165 IPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARG 244 (610)
T ss_pred CCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccC
Confidence 4567889999999999999999999999999999999999999999999999999999998887655422 34
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhhccc------CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCC
Q 015129 107 VQCQALVLAPTRELAQQIEKVMRALGDYL------GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRP 180 (413)
Q Consensus 107 ~~~~~liv~P~~~l~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~ 180 (413)
.++-.||+||+++|+.|.++.+..++..+ .++...+.||.....+......+.+|+|+||++|.+.+..+.+.+
T Consensus 245 EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sL 324 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSL 324 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccH
Confidence 56789999999999999999988876443 356778889999998888889999999999999999999999999
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEe
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNV 260 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (413)
.-++++.+||++++.+.+|.+.+..++..+....|.+++|||++..+..+.+.-+-+|+.+.+.......-++.+-+..+
T Consensus 325 d~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyV 404 (610)
T KOG0341|consen 325 DACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYV 404 (610)
T ss_pred HHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887665443333222222
Q ss_pred ccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 015129 261 EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340 (413)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~ 340 (413)
.. +.++-.+.+-+++ ...++||||..+..++.++++|--.|..+..+||+-.+++|...++.|+.|+-+|||+|++++
T Consensus 405 kq-EaKiVylLeCLQK-T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVAS 482 (610)
T KOG0341|consen 405 KQ-EAKIVYLLECLQK-TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVAS 482 (610)
T ss_pred Hh-hhhhhhHHHHhcc-CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchh
Confidence 22 2344444444443 336899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccC-cHHHHHHHHHHhccccccCCchhhhc
Q 015129 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPSNVADL 412 (413)
Q Consensus 341 ~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
.|+|+|++.|||+||.|.....|.||+||+||.|+.|.+.+|+... +...+-.+...+...-.++|+.|.+|
T Consensus 483 KGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L 555 (610)
T KOG0341|consen 483 KGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAEL 555 (610)
T ss_pred ccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHh
Confidence 9999999999999999999999999999999999999999999885 66778888888888888888877765
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-51 Score=350.43 Aligned_cols=367 Identities=41% Similarity=0.690 Sum_probs=333.1
Q ss_pred hccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhc--CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc
Q 015129 38 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 115 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~ 115 (413)
...+|++++|.+.+.+.+..++|..|+.+|..|+|.++. .+|.|..+..|+|||.++.++++.+.......++++-++
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLa 167 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLA 167 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeC
Confidence 367999999999999999999999999999999999987 589999999999999999999999998887788999999
Q ss_pred CcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHc-CCCCCCcceEEEeccchHH
Q 015129 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEM 194 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iV~DE~h~~ 194 (413)
|+++|+.|+.+.+.+++...++.......+......... ..+|+|+||+.+.+++.. +.+..+.++++|+|||+.+
T Consensus 168 PtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i---~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~M 244 (477)
T KOG0332|consen 168 PTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKL---TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVM 244 (477)
T ss_pred chHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcc---hhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhh
Confidence 999999999999999998887777776665532222111 247999999999999887 7788888999999999987
Q ss_pred hc-cCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHH
Q 015129 195 LS-RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL 273 (413)
Q Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (413)
.+ .++.+.-..+...++.+.|++++|||......++..+...++.......+.....++++++........+++.+.++
T Consensus 245 i~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~l 324 (477)
T KOG0332|consen 245 IDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNL 324 (477)
T ss_pred hhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHH
Confidence 74 56888888999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEE
Q 015129 274 YETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 353 (413)
Q Consensus 274 ~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~ 353 (413)
.....-+..+|||.+++.|..++..|.+.|+.+..+||++...+|..+++.|+.|..+|||+|+++++|+|++.++.||+
T Consensus 325 yg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN 404 (477)
T KOG0332|consen 325 YGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN 404 (477)
T ss_pred HhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC------ChhhHHHhhhhccCCCCcceEEEEeccC-cHHHHHHHHHHhccccccCCc
Q 015129 354 YDLPT------QPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPS 407 (413)
Q Consensus 354 ~~~~~------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 407 (413)
|++|. +.+.|+||+||+||.|+.|.++.++... ....+..++++++...+.+..
T Consensus 405 ydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 405 YDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred cCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCC
Confidence 99985 6789999999999999999999988875 557788999999777766543
No 31
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-50 Score=381.28 Aligned_cols=378 Identities=34% Similarity=0.544 Sum_probs=349.1
Q ss_pred CCchhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC-----CC
Q 015129 33 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----LV 107 (413)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~~ 107 (413)
...+.+..+|...|++..+...++++|+..|+|+|.+|||+|..|+++|-+|-||||||++|++|++.++... ..
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gd 437 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGD 437 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCC
Confidence 3466789999999999999999999999999999999999999999999999999999999999998766432 34
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCc---ce
Q 015129 108 QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY---IK 184 (413)
Q Consensus 108 ~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~---~~ 184 (413)
++-++|++||++|+.|+.+++++++..+++.+.+.+|+.........+..++.|+||||+++.+.+-.......+ +.
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 779999999999999999999999999999999999999999999989999999999999998888655444444 45
Q ss_pred EEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEecccc
Q 015129 185 MFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEE 264 (413)
Q Consensus 185 ~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (413)
++|+||++++.+.+|...+..|++.+++..|.+++|||.+..+..+....+..|+.+.+.........+.+.+.......
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~ 597 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIEN 597 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCch
Confidence 99999999999999999999999999999999999999999999999999999999998888888899999999888777
Q ss_pred chHHHHHHHHHhh-cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCC
Q 015129 265 WKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 343 (413)
Q Consensus 265 ~~~~~l~~~~~~~-~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 343 (413)
.++..+..++... ..+++||||...+.+..+.+.|.+.|+.|..+||+.++.+|..++++|+++.+.+|++|+.+++|+
T Consensus 598 eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGL 677 (997)
T KOG0334|consen 598 EKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGL 677 (997)
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhccc
Confidence 8888888888654 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhh
Q 015129 344 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVA 410 (413)
Q Consensus 344 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (413)
|++.+..||+|+.|..+.+|.+|.||+||.|+.|.+++|+.+++.+....|.+++...-.++|.++.
T Consensus 678 dv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~ 744 (997)
T KOG0334|consen 678 DVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQ 744 (997)
T ss_pred ccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHH
Confidence 9999999999999999999999999999999999999999999999999999999888888887664
No 32
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-50 Score=355.93 Aligned_cols=366 Identities=28% Similarity=0.415 Sum_probs=298.5
Q ss_pred chhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcC-CcEEEeCCCCCcchHHhHHHHHHccccC--------
Q 015129 35 YDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYG-------- 105 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~-------- 105 (413)
...-..-|..++++..+.++|..+||..|+++|...+|.+..| .+++=.|.||||||++|-+|+++.+...
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3344667888999999999999999999999999999999998 7999999999999999999999854221
Q ss_pred ---CCcee--EEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCC--
Q 015129 106 ---LVQCQ--ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-- 178 (413)
Q Consensus 106 ---~~~~~--~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~-- 178 (413)
...++ .||++|||+||.|+.+.+...+...++.+..++||.....+.+.++..++|+|+||++|..++..+..
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 12234 99999999999999999999999999999999999999999999999999999999999999987554
Q ss_pred -CCCcceEEEeccchHHhccCcHHHHHHHHhhCC-----CCceEEEEEeeCCHhHHH---------------------HH
Q 015129 179 -RPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-----AKVQVGVFSATMPPEALE---------------------IT 231 (413)
Q Consensus 179 -~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~-----~~~~~i~~SaT~~~~~~~---------------------~~ 231 (413)
.++.+.++|+||++++...++...+..++..+. ...|.+.+|||..-...+ ++
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 466688999999999999999988888887775 357999999998522111 11
Q ss_pred H--HhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEe
Q 015129 232 R--KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSAT 309 (413)
Q Consensus 232 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~ 309 (413)
+ .+.++|..+...........+......++. ..+--.+..++.+ -++++|||||+...+.++.-.|+..++....+
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~-~eKD~ylyYfl~r-yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~L 493 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECPP-LEKDLYLYYFLTR-YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPL 493 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCCc-cccceeEEEEEee-cCCceEEEechHHHHHHHHHHHhhcCCCCchh
Confidence 1 122344444433332222111111111111 0011111111222 35799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHH
Q 015129 310 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 389 (413)
Q Consensus 310 ~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 389 (413)
|+.|.+.+|.+-+++|.+..-.|||||+++++|+|||++.|||||-.|.+..-|+||.||+.|+++.|..++++.+.+..
T Consensus 494 HA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~ 573 (731)
T KOG0347|consen 494 HASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVG 573 (731)
T ss_pred hHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccc
Q 015129 390 MLFDIQKFYNVVI 402 (413)
Q Consensus 390 ~~~~~~~~~~~~~ 402 (413)
.+.++..-|+...
T Consensus 574 ~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 574 PLKKLCKTLKKKE 586 (731)
T ss_pred HHHHHHHHHhhcc
Confidence 9999888877654
No 33
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.6e-48 Score=368.36 Aligned_cols=324 Identities=21% Similarity=0.277 Sum_probs=253.8
Q ss_pred HCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccC
Q 015129 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 136 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
.+|+..|||+|.++++.+++|+++++.+|||+|||++|+++++.. .+.+||++|+++|+.|+.+.+..+ +
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~----g 75 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKAS----G 75 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHc----C
Confidence 479999999999999999999999999999999999999998752 238999999999999999888764 6
Q ss_pred cEEEEEEcCcchHHHHH----HHHcCCcEEEEccHHHHHHH-HcCCC-CCCcceEEEeccchHHhccC--cHHHH---HH
Q 015129 137 VKVHACVGGTSVREDQR----ILQAGVHVVVGTPGRVFDML-RRQSL-RPDYIKMFVLDEADEMLSRG--FKDQI---YD 205 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~----~~~~~~~iii~T~~~l~~~~-~~~~~-~~~~~~~iV~DE~h~~~~~~--~~~~~---~~ 205 (413)
+.+..+.++........ ......+|+++||+.+.... ....+ ...++++||+||||++.+++ +.... ..
T Consensus 76 i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 76 IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 77777777766543322 23346899999999874321 00111 45668999999999998765 33333 33
Q ss_pred HHhhCCCCceEEEEEeeCCHhHHHHHHHhcC--CCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHH-hhcccce
Q 015129 206 IFQLLPAKVQVGVFSATMPPEALEITRKFMN--KPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYE-TLAITQS 282 (413)
Q Consensus 206 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 282 (413)
+...+ ++.+++++|||+++.........++ .+..... ....+++...... ........+...+. ...++++
T Consensus 156 l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~~~v~~--~~~~~~~~l~~~l~~~~~~~~~ 229 (470)
T TIGR00614 156 LKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLYYEVRR--KTPKILEDLLRFIRKEFKGKSG 229 (470)
T ss_pred HHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcEEEEEe--CCccHHHHHHHHHHHhcCCCce
Confidence 44444 4678999999999877665555443 3332222 2223333322222 22234555666665 4455677
Q ss_pred EEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhh
Q 015129 283 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPEN 362 (413)
Q Consensus 283 lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~ 362 (413)
||||++++.++.+++.|+..|..+..+||+++..+|..+++.|.+|+++|||||+++++|+|+|++++||+++.|.+...
T Consensus 230 IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~ 309 (470)
T TIGR00614 230 IIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMES 309 (470)
T ss_pred EEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccCCCCcceEEEEeccCcHHHHHHHHH
Q 015129 363 YLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 396 (413)
Q Consensus 363 ~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 396 (413)
|.||+||+||.|..|.|++++...|...++.+..
T Consensus 310 y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 310 YYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred HHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 9999999999999999999999988877766543
No 34
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.6e-47 Score=374.91 Aligned_cols=337 Identities=20% Similarity=0.248 Sum_probs=261.6
Q ss_pred CCCCHHHHHHHHH-CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHH
Q 015129 45 MGLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 123 (413)
Q Consensus 45 ~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 123 (413)
++....+...++. +|+..+||.|.++++.++.|+++++.+|||+|||++|+++++.. .+.+|||+|+++|+.+
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqD 515 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQD 515 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHH
Confidence 4566677776655 79999999999999999999999999999999999999999853 2389999999999987
Q ss_pred HHHHHHHhhcccCcEEEEEEcCcchHHHHHHHH------cCCcEEEEccHHHHH--HHHc---CCCCCCcceEEEeccch
Q 015129 124 IEKVMRALGDYLGVKVHACVGGTSVREDQRILQ------AGVHVVVGTPGRVFD--MLRR---QSLRPDYIKMFVLDEAD 192 (413)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iii~T~~~l~~--~~~~---~~~~~~~~~~iV~DE~h 192 (413)
+...+... ++....+.++.........+. ...+|+++||+++.. .+.. .......+.+|||||||
T Consensus 516 QV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAH 591 (1195)
T PLN03137 516 QIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAH 591 (1195)
T ss_pred HHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcch
Confidence 76666553 788888888877655443322 467999999999752 1111 11122447899999999
Q ss_pred HHhccC--cHHHHHH---HHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchH
Q 015129 193 EMLSRG--FKDQIYD---IFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKL 267 (413)
Q Consensus 193 ~~~~~~--~~~~~~~---~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
++.+++ |...... +...+ +..+++++|||.++.....+...++....... ......+++... .........
T Consensus 592 cVSqWGhDFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vf-r~Sf~RpNL~y~--Vv~k~kk~l 667 (1195)
T PLN03137 592 CVSQWGHDFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLWYS--VVPKTKKCL 667 (1195)
T ss_pred hhhhcccchHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe-ecccCccceEEE--EeccchhHH
Confidence 999876 4444433 34444 46779999999998877766555543221111 122333444332 223322234
Q ss_pred HHHHHHHHhh-cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCC
Q 015129 268 ETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 268 ~~l~~~~~~~-~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
..+..++... ...++||||.+++.++.+++.|...|+.+..+||+|++.+|..+++.|.+|+++|||||.++++|||+|
T Consensus 668 e~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkP 747 (1195)
T PLN03137 668 EDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKP 747 (1195)
T ss_pred HHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCcc
Confidence 5566666543 456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHH
Q 015129 347 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 395 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 395 (413)
++++||+++.|.++..|.|++||+||.|..|.|++++...|...++.+.
T Consensus 748 DVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 748 DVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred CCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887776655554
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=7.8e-49 Score=354.66 Aligned_cols=366 Identities=33% Similarity=0.561 Sum_probs=332.1
Q ss_pred hccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCc
Q 015129 38 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 117 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~ 117 (413)
....|+.+-+...+...|...+|..|+++|..|+|.++.+-++|+.+-.|+|||++|...+++.+.........+||+||
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PT 102 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPT 102 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecc
Confidence 35678889999999999999999999999999999999999999999999999999999999888877777799999999
Q ss_pred HHHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhc
Q 015129 118 RELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 196 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~ 196 (413)
++++.|+.+.+.+++..+ |.++..+.||+....+...+ +++.|+|+||+++..+++.+.++.+.++++|+|||+.+.+
T Consensus 103 REiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~ 181 (980)
T KOG4284|consen 103 REIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMD 181 (980)
T ss_pred hhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhc
Confidence 999999999999998754 89999999999877665554 4578999999999999999999999999999999999997
Q ss_pred -cCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEecccc-------chHH
Q 015129 197 -RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEE-------WKLE 268 (413)
Q Consensus 197 -~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 268 (413)
..|...+..++..+|...|++.+|||.+..+...+..++.+|..+.........-+++++++.+.... .+++
T Consensus 182 t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq 261 (980)
T KOG4284|consen 182 TESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQ 261 (980)
T ss_pred hhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999888888889999998887653 3677
Q ss_pred HHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCC
Q 015129 269 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 269 ~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
.|..++++.+-..+||||+....|+.++.+|...|+.+-+++|.|++.+|..+++.+++-.++|||+|+.-++|||-+++
T Consensus 262 ~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~v 341 (980)
T KOG4284|consen 262 KLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNV 341 (980)
T ss_pred HHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCcccc
Confidence 88888888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcH-H----HHHHHHHHhcccccc
Q 015129 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE-R----MLFDIQKFYNVVIEE 404 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~ 404 (413)
+.||++|.|.+..+|.||+||+||.|..|.+++|+....+ . +..++...++....+
T Consensus 342 NLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m~~ria~~~~~~~~p 402 (980)
T KOG4284|consen 342 NLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAMAYRIAVTVKRVVEP 402 (980)
T ss_pred ceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHHHHHHhhhheeeecc
Confidence 9999999999999999999999999999999999988755 2 224455555544433
No 36
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-48 Score=340.15 Aligned_cols=361 Identities=27% Similarity=0.426 Sum_probs=294.9
Q ss_pred ccCcccCCCCHHHHH----------HHHHCCCCCCcHHHHhhhhhhhc---------CCcEEEeCCCCCcchHHhHHHHH
Q 015129 39 YDSFDAMGLQENLLR----------GIYAYGFEKPSAIQQRGIVPFCK---------GLDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~----------~l~~~~~~~~~~~Q~~~~~~i~~---------~~~~li~~~tGsGKT~~~~~~~~ 99 (413)
...|..++++..... .+.++++.+..|.|...++.++. ++++.+.||||||||++|.+|+.
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 445666666665544 48889999999999999998853 57999999999999999999999
Q ss_pred HccccC-CCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHH-cCC----cEEEEccHHHHHHH
Q 015129 100 QQLDYG-LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ-AGV----HVVVGTPGRVFDML 173 (413)
Q Consensus 100 ~~~~~~-~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~iii~T~~~l~~~~ 173 (413)
+.+... -..-+++||+|+++|+.|.++.|.+++...|+.|..+.|..+.......+. ..+ ||+|+||++|.+++
T Consensus 206 Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl 285 (620)
T KOG0350|consen 206 QLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHL 285 (620)
T ss_pred HHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhc
Confidence 998776 345699999999999999999999999999999999999888776665544 334 89999999999999
Q ss_pred H-cCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCC----------------------------------CCceEEE
Q 015129 174 R-RQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP----------------------------------AKVQVGV 218 (413)
Q Consensus 174 ~-~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~i~ 218 (413)
. .+.+.+++++++|+||++++.+..|...+-.+...+. +..+.+.
T Consensus 286 ~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~ 365 (620)
T KOG0350|consen 286 NNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLV 365 (620)
T ss_pred cCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhh
Confidence 8 5788999999999999999998777655554432221 1233566
Q ss_pred EEeeCCHhHHHHHHHhcCCCEEEEec----CCcccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHH
Q 015129 219 FSATMPPEALEITRKFMNKPVRILVK----RDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDW 294 (413)
Q Consensus 219 ~SaT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~ 294 (413)
+|||+..+...+...-++.|....+. .....++.+.+....... ..+.-.+..++......++|+|+++.+.+.+
T Consensus 366 ~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~-~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 366 FSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEP-KFKPLAVYALITSNKLNRTLCFVNSVSSANR 444 (620)
T ss_pred cchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccc-ccchHhHHHHHHHhhcceEEEEecchHHHHH
Confidence 77777666555555556666444443 223344555555555444 3466677788888888999999999999999
Q ss_pred HHHHhh----hCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhc
Q 015129 295 LTDKMR----SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 370 (413)
Q Consensus 295 l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~ 370 (413)
++..|+ ..+..+..++|.++...|.+.++.|+.|++++|||++++++|+|+.++++||+|++|.+...|+||+||+
T Consensus 445 l~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRT 524 (620)
T KOG0350|consen 445 LAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRT 524 (620)
T ss_pred HHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccc
Confidence 999997 2245666789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEeccCcHHHHHHHHHHhcc
Q 015129 371 GRFGRKGVAINFVTRDDERMLFDIQKFYNV 400 (413)
Q Consensus 371 ~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (413)
+|+|+.|.+++++...+.+.+.++-+..+.
T Consensus 525 ARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 525 ARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred ccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 999999999999999999988888776665
No 37
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.1e-46 Score=365.99 Aligned_cols=332 Identities=19% Similarity=0.268 Sum_probs=257.9
Q ss_pred CCCHHHHHHHHH-CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHH
Q 015129 46 GLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 124 (413)
Q Consensus 46 ~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 124 (413)
++++.....|++ +|+..|+|.|.++++.+++|+++++++|||+|||++|+++++.. .+.++|++|+++|+.|+
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dq 81 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQ 81 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHH
Confidence 344444555654 79999999999999999999999999999999999999998753 23799999999999999
Q ss_pred HHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC--
Q 015129 125 EKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-- 198 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~-- 198 (413)
.+.+... ++....+.++......... .....+++++||+.+........+...++++||+||||++.+++
T Consensus 82 v~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 82 VDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred HHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCc
Confidence 9988875 5667777766654443222 23457899999999863222122334468999999999998765
Q ss_pred cH---HHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcC--CCEEEEecCCcccccCeEEEEEEeccccchHHHHHHH
Q 015129 199 FK---DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMN--KPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL 273 (413)
Q Consensus 199 ~~---~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (413)
+. ..+..+...+ ++.+++++|||+++.....+...+. .+.... .....+++..... ........+...
T Consensus 158 fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~---~~~~r~nl~~~v~---~~~~~~~~l~~~ 230 (607)
T PRK11057 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI---SSFDRPNIRYTLV---EKFKPLDQLMRY 230 (607)
T ss_pred ccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE---CCCCCCcceeeee---eccchHHHHHHH
Confidence 33 2344444555 3678999999999876654444433 232222 1122233332221 112345666667
Q ss_pred HHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEE
Q 015129 274 YETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 353 (413)
Q Consensus 274 ~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~ 353 (413)
+....++++||||++++.++.+++.|+..|..+..+||+++..+|.++++.|.+|+++|||||+++++|+|+|++++||+
T Consensus 231 l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~ 310 (607)
T PRK11057 231 VQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH 310 (607)
T ss_pred HHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE
Confidence 77777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHH
Q 015129 354 YDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 394 (413)
Q Consensus 354 ~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 394 (413)
++.|.|...|.|++||+||.|.+|.|++++++.|...++.+
T Consensus 311 ~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 311 FDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred eCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999886655544
No 38
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-48 Score=333.45 Aligned_cols=367 Identities=32% Similarity=0.507 Sum_probs=337.7
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCC-CceeEEEEcCc
Q 015129 39 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL-VQCQALVLAPT 117 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~liv~P~ 117 (413)
...|+.+||+..+.+++.+-||..|+|.|++.+|.++++++++-.+-||||||.+++++++..+.... .+.+++++.|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 57899999999999999999999999999999999999999999999999999999999999987654 45699999999
Q ss_pred HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhcc
Q 015129 118 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR 197 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~ 197 (413)
++|+.|..+..+.++...++...++.|+...++++..++.++||+++||..+..+.-+..+.++.+.+||+||++++...
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 99999999999999999999999999999999999999888999999999998877777788999999999999999999
Q ss_pred CcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhh
Q 015129 198 GFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL 277 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
+|..++.+++..++...|.+++|||.+..+-++.+..+..|..+....+....+..+..+..+.. ..+...|..++...
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~-a~K~aaLl~il~~~ 258 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK-AEKEAALLSILGGR 258 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeecc-HHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998877666666666666666555 45777777777654
Q ss_pred -cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccC
Q 015129 278 -AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 278 -~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
..+.++||+++..+++.+...|+..|..+..++|.+++..|..-...|..++..+++.|+.+.+|+|+|..+.||+|+.
T Consensus 259 ~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~ 338 (529)
T KOG0337|consen 259 IKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDF 338 (529)
T ss_pred ccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccC
Confidence 3458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCC
Q 015129 357 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 406 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (413)
|.+...|.+|.||+.|.|+.|.+|.++...+..++-.+.-+++..+....
T Consensus 339 p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~ 388 (529)
T KOG0337|consen 339 PPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAI 388 (529)
T ss_pred CCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeecc
Confidence 99999999999999999999999999999999999999999988775443
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.5e-47 Score=376.42 Aligned_cols=357 Identities=22% Similarity=0.287 Sum_probs=266.3
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhh-hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015129 41 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
.|++++|++.+.+.+.+.|+.+|+|+|.++++. +.+|+|+++++|||||||+++.++++..+.. +++++|++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHH
Confidence 478899999999999999999999999999998 7789999999999999999999999988753 349999999999
Q ss_pred HHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCc
Q 015129 120 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF 199 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~ 199 (413)
|+.|+.+.++++.. .+.++..++|+...... ....++|+|+||+++..++++....+.+++++|+||+|.+.+.++
T Consensus 79 La~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 79 LASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc
Confidence 99999999998653 48899999988664332 124579999999999988887666678899999999999988777
Q ss_pred HHHHHHHHhhC---CCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCC----------cccccCeEEEEEEeccccch
Q 015129 200 KDQIYDIFQLL---PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD----------ELTLEGIKQFYVNVEKEEWK 266 (413)
Q Consensus 200 ~~~~~~~~~~~---~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 266 (413)
+..++.++..+ ....|++++|||+++. .+...++............ ...... .+...........
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~~~~~~~~ 232 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREVEVPSKDDT 232 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccCCCccchHH
Confidence 77776665443 4678999999999742 2333332211110000000 000000 0000000111112
Q ss_pred HHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhC------------------------------------CCeeEEec
Q 015129 267 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR------------------------------------DHTVSATH 310 (413)
Q Consensus 267 ~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~------------------------------------~~~~~~~~ 310 (413)
...+.+.+. .++++||||++++.++.+++.|... ..++.++|
T Consensus 233 ~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hH 310 (737)
T PRK02362 233 LNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHH 310 (737)
T ss_pred HHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeec
Confidence 233333332 4579999999999999888777542 13688999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEE----cc-----CCCChhhHHHhhhhccCCCCc--ceE
Q 015129 311 GDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD-----LPTQPENYLHRIGRSGRFGRK--GVA 379 (413)
Q Consensus 311 ~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~-----~~~s~~~~~Q~~GR~~R~g~~--~~~ 379 (413)
++++..+|..+++.|++|.++||+||+++++|+|+|..++||. |+ .|.+..+|.||+||+||.|.+ |.+
T Consensus 311 agl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ 390 (737)
T PRK02362 311 AGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEA 390 (737)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceE
Confidence 9999999999999999999999999999999999999999986 44 578899999999999999875 888
Q ss_pred EEEeccCcHHHHHHHHHHhccccccCCchh
Q 015129 380 INFVTRDDERMLFDIQKFYNVVIEELPSNV 409 (413)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
+++....+ ...+.+.+++....+++...+
T Consensus 391 ii~~~~~~-~~~~~~~~~l~~~~~~i~S~l 419 (737)
T PRK02362 391 VLLAKSYD-ELDELFERYIWADPEDVRSKL 419 (737)
T ss_pred EEEecCch-hHHHHHHHHHhCCCCceeecC
Confidence 88775543 233334566655555554433
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=7.7e-46 Score=372.21 Aligned_cols=334 Identities=22% Similarity=0.304 Sum_probs=247.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC------CCceeEEEEcCcHHH
Q 015129 47 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG------LVQCQALVLAPTREL 120 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~------~~~~~~liv~P~~~l 120 (413)
+++.+.+.+.+ ++..|+|+|.++++.+.+|+|++++||||||||+++++++++.+... ..+.++||++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56667666655 78899999999999999999999999999999999999999877532 234589999999999
Q ss_pred HHHHHHHHHH-------hh----ccc-CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCC--CCCcceEE
Q 015129 121 AQQIEKVMRA-------LG----DYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL--RPDYIKMF 186 (413)
Q Consensus 121 ~~q~~~~~~~-------~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~--~~~~~~~i 186 (413)
+.|+.+.+.+ +. ... ++.+...+|+.......+....+++|+||||++|..++..... .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999886653 22 122 6788899999887777777777899999999999877754332 36778999
Q ss_pred EeccchHHhccCcHHH----HHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCC-----C--EEEEecCCcccccCeEE
Q 015129 187 VLDEADEMLSRGFKDQ----IYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNK-----P--VRILVKRDELTLEGIKQ 255 (413)
Q Consensus 187 V~DE~h~~~~~~~~~~----~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~ 255 (413)
|+||+|.+.+..++.. +.++....+...|++++|||+++. ......+.+. + ..+. .........+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEE-ccCCCccceEEE
Confidence 9999999987655543 344444455678999999998752 2222222221 1 1111 111000000100
Q ss_pred EEEEe-----cccc----chHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhC------CCeeEEecCCCCHHHHHH
Q 015129 256 FYVNV-----EKEE----WKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR------DHTVSATHGDMDQNTRDI 320 (413)
Q Consensus 256 ~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~ 320 (413)
.... .... .....+..+++ ..+++|||||++..++.++..|... +..+..+||+++.++|..
T Consensus 255 -~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ 331 (876)
T PRK13767 255 -ISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLE 331 (876)
T ss_pred -eccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHH
Confidence 0000 0011 11223333333 3468999999999999999999763 467999999999999999
Q ss_pred HHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCC-CcceEEEEeccC
Q 015129 321 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG-RKGVAINFVTRD 386 (413)
Q Consensus 321 ~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g-~~~~~~~~~~~~ 386 (413)
+++.|++|++++||||++++.|+|+|++++||+++.|.+...|+||+||+||.+ ..+.+.++....
T Consensus 332 ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 332 VEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred HHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 999999999999999999999999999999999999999999999999999874 444555554443
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=5.8e-46 Score=362.46 Aligned_cols=326 Identities=22% Similarity=0.298 Sum_probs=257.4
Q ss_pred HHHH-CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhh
Q 015129 54 GIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 54 ~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~ 132 (413)
.|++ +|+.+++|.|.++++.+++|+++++++|||+|||++|+++++.. .+.++|++|+++|+.|+.+.++.+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~~- 76 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRAA- 76 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHc-
Confidence 3433 89999999999999999999999999999999999999888742 237899999999999999988875
Q ss_pred cccCcEEEEEEcCcchHHHHH----HHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC--cHHH---H
Q 015129 133 DYLGVKVHACVGGTSVREDQR----ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG--FKDQ---I 203 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~--~~~~---~ 203 (413)
++.+..++++........ ......+|+++||+++............++++||+||||++..++ +... +
T Consensus 77 ---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 77 ---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 677888888776554433 233578999999999854333333445678999999999998755 4433 3
Q ss_pred HHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhcccceE
Q 015129 204 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSV 283 (413)
Q Consensus 204 ~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 283 (413)
..+...++. .+++++|||+++.....+...+......... .....+++..... ....+...+.+.+....+.++|
T Consensus 154 ~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~nl~~~v~---~~~~~~~~l~~~l~~~~~~~~I 228 (591)
T TIGR01389 154 GSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFI-TSFDRPNLRFSVV---KKNNKQKFLLDYLKKHRGQSGI 228 (591)
T ss_pred HHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCCCCCcEEEEE---eCCCHHHHHHHHHHhcCCCCEE
Confidence 344455544 4499999999988776666655432111111 1122233332222 2234566777777776678999
Q ss_pred EEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhH
Q 015129 284 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY 363 (413)
Q Consensus 284 if~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~ 363 (413)
|||++++.++.+++.|...|..+..+||+++.++|..+++.|.+|+++|||||+++++|+|+|++++||+++.|.|...|
T Consensus 229 If~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y 308 (591)
T TIGR01389 229 IYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESY 308 (591)
T ss_pred EEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCCCCcceEEEEeccCcHHHHHHH
Q 015129 364 LHRIGRSGRFGRKGVAINFVTRDDERMLFDI 394 (413)
Q Consensus 364 ~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 394 (413)
.|++||+||.|..+.|++++...|....+.+
T Consensus 309 ~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 309 YQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred hhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 9999999999999999999888776554443
No 42
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1e-45 Score=355.21 Aligned_cols=362 Identities=21% Similarity=0.261 Sum_probs=280.5
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC-----CCceeEEEEcCcHHH
Q 015129 46 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----LVQCQALVLAPTREL 120 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~~liv~P~~~l 120 (413)
-|++.+.+.++.. +.+|||.|..|++.+.+|+|+++.||||||||+++++|++..+... ..+-.+|||+|.++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3678888888877 8999999999999999999999999999999999999999999766 234689999999999
Q ss_pred HHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcC--CCCCCcceEEEeccchHHhccC
Q 015129 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ--SLRPDYIKMFVLDEADEMLSRG 198 (413)
Q Consensus 121 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~--~~~~~~~~~iV~DE~h~~~~~~ 198 (413)
..++.+++..++...|+.+...+|++......+...++++|+|||||+|.-++... .-.+.+++++|+||.|.+....
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 99999999999999999999999999999888888899999999999997666432 2346779999999999998655
Q ss_pred cH----HHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCC-EEEEecCCcccccCeEEEEEEe------ccccchH
Q 015129 199 FK----DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKP-VRILVKRDELTLEGIKQFYVNV------EKEEWKL 267 (413)
Q Consensus 199 ~~----~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 267 (413)
.+ -.++++....+ ..|.|++|||..+. ....+.+.+.. ....+.........+.-..... ......+
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHH
Confidence 44 34456656665 89999999998743 33444444432 1111111111111111111111 1112355
Q ss_pred HHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCC-CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCC
Q 015129 268 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD-HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
+.+.++++++. .+|||+|++..++.+...|+..+ ..+..+||+++.+.|..+.++|++|+.+++|||++++-|||+.
T Consensus 244 ~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 244 ERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 66667777654 89999999999999999999987 8999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCChhhHHHhhhhccCC-CCcceEEEEeccCc--HHHHHHHHHHhccccc--cCCchhhhc
Q 015129 347 QVSLVINYDLPTQPENYLHRIGRSGRF-GRKGVAINFVTRDD--ERMLFDIQKFYNVVIE--ELPSNVADL 412 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~-g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~ 412 (413)
+++.||+++.|.+...+.||+||+|.. |...+++++....+ ..-....+..+....+ +++++-+++
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDV 392 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDV 392 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhH
Confidence 999999999999999999999999875 44566666655532 1222333444444443 444554443
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-45 Score=367.02 Aligned_cols=345 Identities=19% Similarity=0.248 Sum_probs=262.5
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhh-hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015129 41 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
.|+++++++.+.+.+++.|+..|+|+|.++++. +.+|+++++++|||||||+++.++++..+... +.++||++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHH
Confidence 477889999999999999999999999999986 78899999999999999999999998876542 349999999999
Q ss_pred HHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCc
Q 015129 120 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF 199 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~ 199 (413)
|+.|+.+.+..+. ..+.++..++|+...... ....++|+|+||+++..+++.....++++++||+||+|.+.+..+
T Consensus 80 La~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 80 LAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc
Confidence 9999999998864 458899999988764322 224679999999999888877666788899999999999988888
Q ss_pred HHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEE-----EEEEeccc------cchHH
Q 015129 200 KDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQ-----FYVNVEKE------EWKLE 268 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------~~~~~ 268 (413)
...+..++..+....|++++|||+++ ..+... +++...... . ..+..+.. .+...... .....
T Consensus 156 g~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~-~---~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T PRK00254 156 GATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVVS-D---WRPVKLRKGVFYQGFLFWEDGKIERFPNSWES 229 (720)
T ss_pred hHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccccC-C---CCCCcceeeEecCCeeeccCcchhcchHHHHH
Confidence 88999999988889999999999975 334443 443321111 1 11111110 00001110 11122
Q ss_pred HHHHHHHhhcccceEEEEccHHHHHHHHHHhhh---------------------------------CCCeeEEecCCCCH
Q 015129 269 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS---------------------------------RDHTVSATHGDMDQ 315 (413)
Q Consensus 269 ~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~---------------------------------~~~~~~~~~~~~~~ 315 (413)
.+.+.++ .++++||||++++.++.++..|.. ....+..+|+++++
T Consensus 230 ~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 230 LVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 2333333 357999999999998877655532 12358999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEE-------ccCC-CChhhHHHhhhhccCCC--CcceEEEEecc
Q 015129 316 NTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN-------YDLP-TQPENYLHRIGRSGRFG--RKGVAINFVTR 385 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~-------~~~~-~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~ 385 (413)
.+|..+++.|++|.++|||||+++++|+|+|..++||. ++.+ .+..+|.||+||+||.| ..|.++++...
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 99999999999999999999999999999999999984 3333 25679999999999976 45889988776
Q ss_pred CcHHHHHHHHHHhccc
Q 015129 386 DDERMLFDIQKFYNVV 401 (413)
Q Consensus 386 ~~~~~~~~~~~~~~~~ 401 (413)
.+... .+++++...
T Consensus 388 ~~~~~--~~~~~~~~~ 401 (720)
T PRK00254 388 EEPSK--LMERYIFGK 401 (720)
T ss_pred cchHH--HHHHHHhCC
Confidence 54222 244554443
No 44
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-46 Score=337.35 Aligned_cols=375 Identities=32% Similarity=0.446 Sum_probs=325.9
Q ss_pred hhhccCccc----CCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC-----C
Q 015129 36 DEVYDSFDA----MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----L 106 (413)
Q Consensus 36 ~~~~~~~~~----~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~ 106 (413)
..++.+|.+ ...++.+...+...+|..|+|.|.++++.++++++++.++|||||||++|.++++..+... .
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 455667766 4678889999999999999999999999999999999999999999999999999988643 3
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhh--cccCcEEEEEEcCcchHHHH-HHHHcCCcEEEEccHHHHHHHHcCC--CCCC
Q 015129 107 VQCQALVLAPTRELAQQIEKVMRALG--DYLGVKVHACVGGTSVREDQ-RILQAGVHVVVGTPGRVFDMLRRQS--LRPD 181 (413)
Q Consensus 107 ~~~~~liv~P~~~l~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iii~T~~~l~~~~~~~~--~~~~ 181 (413)
.+-+++|+.|+++|+.|.++++.++. ...+..+..+.......... ......++++|.||..+...+.... .+++
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~ 287 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLS 287 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhh
Confidence 45699999999999999999999998 54455544444332222211 1122357999999999988887654 6788
Q ss_pred cceEEEeccchHHhcc-CcHHHHHHHHhhCCC-CceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEE
Q 015129 182 YIKMFVLDEADEMLSR-GFKDQIYDIFQLLPA-KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVN 259 (413)
Q Consensus 182 ~~~~iV~DE~h~~~~~-~~~~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (413)
.+..+|+||++.+... .+..++..++..+.+ ...+-++|||.+....+........+..+.+...+.....+.+-...
T Consensus 288 ~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF 367 (593)
T KOG0344|consen 288 KVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVF 367 (593)
T ss_pred eeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhhee
Confidence 8999999999999988 888888888887764 55677899999999999999888888888888777777788888888
Q ss_pred eccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHh-hhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 015129 260 VEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM-RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 338 (413)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~ 338 (413)
......++-.+.+++......+++||+.+.+.|..+...| .-.++++.++||+.++.+|.+.+++|+.|++.+||||++
T Consensus 368 ~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdl 447 (593)
T KOG0344|consen 368 CGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDL 447 (593)
T ss_pred eecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhh
Confidence 8888889999999999988889999999999999999999 566889999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhh
Q 015129 339 LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVA 410 (413)
Q Consensus 339 ~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (413)
+++|+|+.+++.||+||.|.+...|++|+||+||.|+.|.+++||++.|...++.+.+.+...--++|+++.
T Consensus 448 l~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~m 519 (593)
T KOG0344|consen 448 LARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKIM 519 (593)
T ss_pred hhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888888887654
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.2e-44 Score=356.52 Aligned_cols=349 Identities=20% Similarity=0.260 Sum_probs=256.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHH
Q 015129 41 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 120 (413)
.|+++++++.+.+.+.+.++. ++++|.++++.+.+|+++++++|||||||+++.++++..+..+ .+++|++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~---~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG---LKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC---CcEEEEechHHH
Confidence 467889999999999999985 9999999999999999999999999999999999988877654 389999999999
Q ss_pred HHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcH
Q 015129 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK 200 (413)
Q Consensus 121 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~ 200 (413)
+.|+++.+.++. ..+..+...+|+...... ....++|+|+||+++..++.++...+.++++||+||+|.+.+..++
T Consensus 78 a~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg 153 (674)
T PRK01172 78 AMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRG 153 (674)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCcc
Confidence 999999998864 457888888887654322 1245799999999998888877666788999999999999877777
Q ss_pred HHHHHHHh---hCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEE-----EeccccchHHHHHH
Q 015129 201 DQIYDIFQ---LLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYV-----NVEKEEWKLETLCD 272 (413)
Q Consensus 201 ~~~~~~~~---~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 272 (413)
..+..++. ..+...|++++|||+++ ..++.. +++.... ... ..+..+..... ...........+..
T Consensus 154 ~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~~-~~~---~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~ 227 (674)
T PRK01172 154 PTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASLI-KSN---FRPVPLKLGILYRKRLILDGYERSQVDINS 227 (674)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCcc-CCC---CCCCCeEEEEEecCeeeecccccccccHHH
Confidence 66666544 34567899999999964 333333 3332211 100 11111111000 00000001111222
Q ss_pred HHHh--hcccceEEEEccHHHHHHHHHHhhhC-------------------------CCeeEEecCCCCHHHHHHHHHHH
Q 015129 273 LYET--LAITQSVIFVNTRRKVDWLTDKMRSR-------------------------DHTVSATHGDMDQNTRDIIMREF 325 (413)
Q Consensus 273 ~~~~--~~~~~~lif~~~~~~~~~l~~~L~~~-------------------------~~~~~~~~~~~~~~~r~~~~~~f 325 (413)
++.. ..++++||||++++.++.+++.|... ..++..+||+++..+|..+++.|
T Consensus 228 ~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f 307 (674)
T PRK01172 228 LIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307 (674)
T ss_pred HHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHH
Confidence 3322 24579999999999999998888643 12578899999999999999999
Q ss_pred hcCCCcEEEEcCCCCCCCCCCCCcEEEEccC---------CCChhhHHHhhhhccCCCC--cceEEEEeccCcHHHHHHH
Q 015129 326 RSGSSRVLITTDLLARGIDVQQVSLVINYDL---------PTQPENYLHRIGRSGRFGR--KGVAINFVTRDDERMLFDI 394 (413)
Q Consensus 326 ~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~---------~~s~~~~~Q~~GR~~R~g~--~~~~~~~~~~~~~~~~~~~ 394 (413)
++|.++|||||+++++|+|+|+.. ||+.+. |.+..+|.||+||+||.|. .|.++++....+ ....+
T Consensus 308 ~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~--~~~~~ 384 (674)
T PRK01172 308 RNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA--SYDAA 384 (674)
T ss_pred HcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc--cHHHH
Confidence 999999999999999999999864 444432 4578899999999999985 466777765443 22345
Q ss_pred HHHhccccccCC
Q 015129 395 QKFYNVVIEELP 406 (413)
Q Consensus 395 ~~~~~~~~~~~~ 406 (413)
.+++....+++.
T Consensus 385 ~~~l~~~~~pi~ 396 (674)
T PRK01172 385 KKYLSGEPEPVI 396 (674)
T ss_pred HHHHcCCCCcee
Confidence 566655544443
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5.3e-43 Score=347.96 Aligned_cols=333 Identities=20% Similarity=0.256 Sum_probs=254.3
Q ss_pred CCCHHHHHHH-HHCCCCCCcHHHHhhhhhhhcC------CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcH
Q 015129 46 GLQENLLRGI-YAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 118 (413)
Q Consensus 46 ~l~~~~~~~l-~~~~~~~~~~~Q~~~~~~i~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 118 (413)
+.+..+.+.+ ..+++ .||+.|..+++.+.++ .+.+++||||+|||.+++.+++..+..+ .+++|++||+
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~ 510 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTT 510 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcH
Confidence 3444555555 45788 6999999999999874 6899999999999999999988877655 3999999999
Q ss_pred HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHH
Q 015129 119 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 194 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~ 194 (413)
+|+.|+++.++++....++++..++|+....+.... ....++|+|+||..+ .....+.+++++|+||+|++
T Consensus 511 ~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrf 585 (926)
T TIGR00580 511 LLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRF 585 (926)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccccc
Confidence 999999999999888788888888887664443322 234689999999533 34566788999999999985
Q ss_pred hccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHH
Q 015129 195 LSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY 274 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (413)
. ......+..++.+.++++|||||.+....+......++..+...... ...+...+..... ......+...+
T Consensus 586 g-----v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~-~~i~~~i~~el 657 (926)
T TIGR00580 586 G-----VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDP-ELVREAIRREL 657 (926)
T ss_pred c-----hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCH-HHHHHHHHHHH
Confidence 2 23334455566788999999999887666554444444444332221 1234443332221 11122222222
Q ss_pred HhhcccceEEEEccHHHHHHHHHHhhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEE
Q 015129 275 ETLAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 (413)
Q Consensus 275 ~~~~~~~~lif~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 352 (413)
..+++++|||++++.++.+++.|++. +..+..+||+|++.+|.+++++|.+|+.+|||||+++++|+|+|++++||
T Consensus 658 --~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VI 735 (926)
T TIGR00580 658 --LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTII 735 (926)
T ss_pred --HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEE
Confidence 24579999999999999999999885 67899999999999999999999999999999999999999999999999
Q ss_pred EccCCC-ChhhHHHhhhhccCCCCcceEEEEeccC------cHHHHHHHHHH
Q 015129 353 NYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTRD------DERMLFDIQKF 397 (413)
Q Consensus 353 ~~~~~~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~~------~~~~~~~~~~~ 397 (413)
+++.+. +..+|.|++||+||.|+.|.|++++.+. ..++++.++++
T Consensus 736 i~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 736 IERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred EecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 998864 6789999999999999999999998654 34555555554
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4.1e-42 Score=337.54 Aligned_cols=317 Identities=19% Similarity=0.257 Sum_probs=238.5
Q ss_pred HHHHHHHCCCCCCcHHHHhhhhhhhcC------CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHH
Q 015129 51 LLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 124 (413)
Q Consensus 51 ~~~~l~~~~~~~~~~~Q~~~~~~i~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 124 (413)
+......++| +||+.|.++++.+.++ .+.++.||||||||.+++++++..+..+ .+++|++||++|+.|+
T Consensus 251 ~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g---~q~lilaPT~~LA~Q~ 326 (681)
T PRK10917 251 LKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG---YQAALMAPTEILAEQH 326 (681)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEeccHHHHHHH
Confidence 3444566788 7999999999999886 3799999999999999999998877654 4999999999999999
Q ss_pred HHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcH
Q 015129 125 EKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK 200 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~ 200 (413)
++.++++....++++..++|+......... ....++|+|+||..+.+ ...+.+++++|+||+|++....
T Consensus 327 ~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~q-- 399 (681)
T PRK10917 327 YENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVEQ-- 399 (681)
T ss_pred HHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHHH--
Confidence 999999998889999999999886544332 23468999999987642 3456779999999999974322
Q ss_pred HHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhccc
Q 015129 201 DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 280 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (413)
...+......+++++|||||.+....... ++................+...+..........+.+...+ ..++
T Consensus 400 ---r~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~--~~g~ 472 (681)
T PRK10917 400 ---RLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEI--AKGR 472 (681)
T ss_pred ---HHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHH--HcCC
Confidence 22233334467899999999876554432 2222211111111112233333332222122223333332 2456
Q ss_pred ceEEEEccH--------HHHHHHHHHhhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcE
Q 015129 281 QSVIFVNTR--------RKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 350 (413)
Q Consensus 281 ~~lif~~~~--------~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~ 350 (413)
+++|||+.. ..+..+++.|... +..+..+||+|+..+|.+++++|++|+.+|||||+++++|+|+|++++
T Consensus 473 q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~ 552 (681)
T PRK10917 473 QAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATV 552 (681)
T ss_pred cEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcE
Confidence 999999954 3456667777665 468999999999999999999999999999999999999999999999
Q ss_pred EEEccCCC-ChhhHHHhhhhccCCCCcceEEEEecc
Q 015129 351 VINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 351 vi~~~~~~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 385 (413)
||+++.|. +...+.|++||+||.|..|.|++++..
T Consensus 553 VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 553 MVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred EEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 99999986 578899999999999999999999953
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.4e-42 Score=348.52 Aligned_cols=319 Identities=18% Similarity=0.220 Sum_probs=249.1
Q ss_pred HHHHHHHHHCCCCCCcHHHHhhhhhhhcC------CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHH
Q 015129 49 ENLLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 122 (413)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 122 (413)
.+..+...+++| .|++.|.++++.+..+ .+++++++||+|||.+++.++...+.. +.+++|++||++|+.
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~ 663 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQ 663 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHH
Confidence 445566678888 7999999999999886 799999999999999988777665543 349999999999999
Q ss_pred HHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH----HcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC
Q 015129 123 QIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG 198 (413)
Q Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~ 198 (413)
|+++.+.++....++.+..++++.+...+...+ ...++|+|+||+.+. ....+.+++++|+||+|++.
T Consensus 664 Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG--- 735 (1147)
T PRK10689 664 QHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFG--- 735 (1147)
T ss_pred HHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcc---
Confidence 999999987776778888888887766555433 246899999997442 34456779999999999972
Q ss_pred cHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhc
Q 015129 199 FKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLA 278 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (413)
+ .....+..++.+.|++++||||.+....+....+.++..+...... ...+.+..........+...+..+ ..
T Consensus 736 ~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el---~r 808 (1147)
T PRK10689 736 V--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREI---LR 808 (1147)
T ss_pred h--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHH---hc
Confidence 1 1234455667789999999999988777766666666655443322 123444433322211112222222 24
Q ss_pred ccceEEEEccHHHHHHHHHHhhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccC
Q 015129 279 ITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 279 ~~~~lif~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
+++++||||+++.++.+++.|++. +..+..+||+|++.+|.+++.+|.+|+++|||||+++++|+|+|++++||+.+.
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~a 888 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecC
Confidence 578999999999999999999887 678999999999999999999999999999999999999999999999996654
Q ss_pred C-CChhhHHHhhhhccCCCCcceEEEEeccC
Q 015129 357 P-TQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 357 ~-~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 386 (413)
. .+..+|.|++||+||.|+.|.|++++...
T Consensus 889 d~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred CCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 3 46788999999999999999999888654
No 49
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-42 Score=322.14 Aligned_cols=332 Identities=22% Similarity=0.289 Sum_probs=262.8
Q ss_pred HHHHH-CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 53 RGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 53 ~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
..|+. +|+..+|+-|.+++..+++|+++++.+|||+||+++|.+|++-. . +-+|||.|..+|..++.+.++..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----~-G~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----E-GLTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----C-CCEEEECchHHHHHHHHHHHHHc
Confidence 44544 69999999999999999999999999999999999999998754 2 28999999999999999999886
Q ss_pred hcccCcEEEEEEcCcchHHHHHHH----HcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC--cH---HH
Q 015129 132 GDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG--FK---DQ 202 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~--~~---~~ 202 (413)
|+.+..+.+..+..+..... ....++++.+||.+..-.....+....+.+++|||||+++.++ |. ..
T Consensus 81 ----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 81 ----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred ----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHH
Confidence 67777777776665554432 3457999999998843322222223447899999999999886 44 44
Q ss_pred HHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEE-EEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhcccc
Q 015129 203 IYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVR-ILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQ 281 (413)
Q Consensus 203 ~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (413)
+..+...++ ++.++.+|||.++.....+...+..... ... ...+.+++............+...+.+ ......+.
T Consensus 157 lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~--~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~ 232 (590)
T COG0514 157 LGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFR--GSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKS 232 (590)
T ss_pred HHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEE--ecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCC
Confidence 455566666 7789999999999888877666554321 221 223334554444433322333333333 22445567
Q ss_pred eEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChh
Q 015129 282 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361 (413)
Q Consensus 282 ~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~ 361 (413)
.||||.|++.++.+++.|...|..+..||++|+..+|..+.++|.+++.+|+|||.+++.|||-|++++|||++.|.|.+
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHh
Q 015129 362 NYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFY 398 (413)
Q Consensus 362 ~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~ 398 (413)
.|.|-+||+||.|.+..|++++.+.|......+.+.-
T Consensus 313 sYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 313 SYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred HHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhh
Confidence 9999999999999999999999999977666655543
No 50
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-41 Score=302.67 Aligned_cols=322 Identities=21% Similarity=0.246 Sum_probs=243.2
Q ss_pred CCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcE
Q 015129 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK 138 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
+..++|.+|.......+.+ |.+++.|||.|||+++.+-+...+..... ++|+++||+-|+.|.++.+.+........
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 3457899999888776666 89999999999999998888777665443 89999999999999999999988766677
Q ss_pred EEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhc-cCcHHHHHHHHhhCCCCceEE
Q 015129 139 VHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQLLPAKVQVG 217 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~-~~~~~~~~~~~~~~~~~~~~i 217 (413)
+..++|.......... +....|+|+||+.+.+-+..+..+..++.++|+||||+... +.|....... -....++.++
T Consensus 89 i~~ltGev~p~~R~~~-w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y-~~~~k~~~il 166 (542)
T COG1111 89 IAALTGEVRPEEREEL-WAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEY-LRSAKNPLIL 166 (542)
T ss_pred eeeecCCCChHHHHHH-HhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHH-HHhccCceEE
Confidence 8888888776655444 44569999999999999999999999999999999999764 4444444434 3445678899
Q ss_pred EEEeeCCHhHHHHHH---HhcCCCEEEEecCCcccccCeEE---------------------------------------
Q 015129 218 VFSATMPPEALEITR---KFMNKPVRILVKRDELTLEGIKQ--------------------------------------- 255 (413)
Q Consensus 218 ~~SaT~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 255 (413)
++||||..+...... .+.-..+.+....+.-..+.+..
T Consensus 167 gLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~ 246 (542)
T COG1111 167 GLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIE 246 (542)
T ss_pred EEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcee
Confidence 999999854433211 11111111111100000000000
Q ss_pred -------------------------------------------------------E------------------------
Q 015129 256 -------------------------------------------------------F------------------------ 256 (413)
Q Consensus 256 -------------------------------------------------------~------------------------ 256 (413)
+
T Consensus 247 ~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~ 326 (542)
T COG1111 247 SSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLA 326 (542)
T ss_pred ccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhc
Confidence 0
Q ss_pred -------------EEEeccccchHHHHHHHHHh----hcccceEEEEccHHHHHHHHHHhhhCCCeeE--Ee-------c
Q 015129 257 -------------YVNVEKEEWKLETLCDLYET----LAITQSVIFVNTRRKVDWLTDKMRSRDHTVS--AT-------H 310 (413)
Q Consensus 257 -------------~~~~~~~~~~~~~l~~~~~~----~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~--~~-------~ 310 (413)
.....-...|++.+.++++. ....++|||++.+.+|+.+.+.|...+..+. ++ .
T Consensus 327 d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~ 406 (542)
T COG1111 327 DPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGD 406 (542)
T ss_pred ChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccc
Confidence 00000011245555555543 3456899999999999999999999887763 33 2
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccC
Q 015129 311 GDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 311 ~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 386 (413)
.+|++.++.++++.|++|+++|||||++.++|+|+|.++.||+|++..|...++||.||+||. +.|+++++++.+
T Consensus 407 ~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 407 KGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred cccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 579999999999999999999999999999999999999999999999999999999999998 789999999997
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.3e-41 Score=329.26 Aligned_cols=317 Identities=21% Similarity=0.288 Sum_probs=236.3
Q ss_pred HHHHHHHHHCCCCCCcHHHHhhhhhhhcC------CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHH
Q 015129 49 ENLLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 122 (413)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 122 (413)
..+...++..+| +||+.|.++++.+.++ .+.+++||||||||.+++++++..+..+. +++|++||++|+.
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~---qvlilaPT~~LA~ 298 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGY---QVALMAPTEILAE 298 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCC---cEEEECCHHHHHH
Confidence 344566678898 8999999999999875 36899999999999999999888776543 8999999999999
Q ss_pred HHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC
Q 015129 123 QIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG 198 (413)
Q Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~ 198 (413)
|+++.++++....++++..++|+......... ....++|+|+||..+.+ ...+.+++++|+||+|++....
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~q 373 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQ 373 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHH
Confidence 99999999988889999999998876553322 23467999999987643 3456779999999999864322
Q ss_pred cHHHHHHHHhhCC--CCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHH-
Q 015129 199 FKDQIYDIFQLLP--AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYE- 275 (413)
Q Consensus 199 ~~~~~~~~~~~~~--~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 275 (413)
...+..... ..+++++|||||.+....... ++................+...+.... .. +.+...+.
T Consensus 374 ----r~~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p~~r~~i~~~~~~~~---~~-~~~~~~i~~ 443 (630)
T TIGR00643 374 ----RKKLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELPPGRKPITTVLIKHD---EK-DIVYEFIEE 443 (630)
T ss_pred ----HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCCCCCCceEEEEeCcc---hH-HHHHHHHHH
Confidence 222333332 267899999998776544322 222111111111111122333222211 12 22333222
Q ss_pred h-hcccceEEEEccH--------HHHHHHHHHhhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCC
Q 015129 276 T-LAITQSVIFVNTR--------RKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 276 ~-~~~~~~lif~~~~--------~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
. ..+++++|||+.. ..++.+++.|.+. +..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|
T Consensus 444 ~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvD 523 (630)
T TIGR00643 444 EIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVD 523 (630)
T ss_pred HHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcc
Confidence 2 2456899999875 4466677777653 678999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEccCCC-ChhhHHHhhhhccCCCCcceEEEEec
Q 015129 345 VQQVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVT 384 (413)
Q Consensus 345 ~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~~~~~~~~~ 384 (413)
+|++++||+++.|. +...+.|++||+||.|..|.|++++.
T Consensus 524 iP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 524 VPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred cCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999999886 67899999999999999999999984
No 52
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.3e-41 Score=325.95 Aligned_cols=312 Identities=20% Similarity=0.233 Sum_probs=236.6
Q ss_pred CCCCCCcHHHHhhhhhhhcCC-cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhccc-
Q 015129 58 YGFEKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL- 135 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~-~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~- 135 (413)
.||. |+|+|.++++.++.|+ ++++.+|||||||.++.++++..........+.++++|+++|+.|+++.++++...+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 5886 9999999999999998 578789999999987654444322222222355668899999999999999987654
Q ss_pred ----------------------CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCC---------------
Q 015129 136 ----------------------GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL--------------- 178 (413)
Q Consensus 136 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~--------------- 178 (413)
++++..++||.....+......+++|+|+|++.+ .+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i----~sr~L~~gYg~~~~~~pi~a 166 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMI----GSRLLFSGYGCGFKSRPLHA 166 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHH----cCCccccccccccccccchh
Confidence 4788899999998888888888899999996544 33332
Q ss_pred -CCCcceEEEeccchHHhccCcHHHHHHHHhhC--CC---CceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccC
Q 015129 179 -RPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL--PA---KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEG 252 (413)
Q Consensus 179 -~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~--~~---~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (413)
.+.+..++|+|||| .+.+|...+..+.... +. ..|+++||||++.+.......+..++..............
T Consensus 167 g~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~k 244 (844)
T TIGR02621 167 GFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKK 244 (844)
T ss_pred hhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccc
Confidence 15678999999999 5788999999999864 33 2699999999998777776677766665555444444455
Q ss_pred eEEEEEEeccccchHHHHHHHH---HhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHH-----HHHHH
Q 015129 253 IKQFYVNVEKEEWKLETLCDLY---ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRD-----IIMRE 324 (413)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~-----~~~~~ 324 (413)
+.+++. ... ..+...+...+ ....++++|||||+++.++.+++.|+..+. ..+||+|++.+|. .+++.
T Consensus 245 i~q~v~-v~~-e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~ 320 (844)
T TIGR02621 245 IVKLVP-PSD-EKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNR 320 (844)
T ss_pred eEEEEe-cCh-HHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHH
Confidence 555432 222 22332222211 123457899999999999999999998776 8999999999999 78899
Q ss_pred Hhc----CC-------CcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceE-EEEe
Q 015129 325 FRS----GS-------SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA-INFV 383 (413)
Q Consensus 325 f~~----~~-------~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~-~~~~ 383 (413)
|++ |+ ..|||||+++++|+|++. ++||+...| ...|+||+||+||.|+.+.+ +.++
T Consensus 321 Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 321 FLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred HhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 987 43 679999999999999986 888886655 68999999999999986432 4444
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=5.5e-41 Score=342.27 Aligned_cols=321 Identities=20% Similarity=0.284 Sum_probs=231.8
Q ss_pred EeCCCCCcchHHhHHHHHHccccC----------CCceeEEEEcCcHHHHHHHHHHHHHhh------------cccCcEE
Q 015129 82 QQAQSGTGKTATFCSGILQQLDYG----------LVQCQALVLAPTRELAQQIEKVMRALG------------DYLGVKV 139 (413)
Q Consensus 82 i~~~tGsGKT~~~~~~~~~~~~~~----------~~~~~~liv~P~~~l~~q~~~~~~~~~------------~~~~~~~ 139 (413)
|++|||||||++++++++..+... ..+.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999998887542 134689999999999999999887521 1246889
Q ss_pred EEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcC-CCCCCcceEEEeccchHHhccCc----HHHHHHHHhhCCCCc
Q 015129 140 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEADEMLSRGF----KDQIYDIFQLLPAKV 214 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~-~~~~~~~~~iV~DE~h~~~~~~~----~~~~~~~~~~~~~~~ 214 (413)
...+|+....+..+...++++|+|+||++|..++.++ ...++++++||+||+|.+.+..+ ...+.++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988877777778999999999998877543 34578899999999999986543 345667777777789
Q ss_pred eEEEEEeeCCHhHHHHHHHhcCC-CEEEEecCCcccccCeEEEEEEecccc-------------------chHHHH-HHH
Q 015129 215 QVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFYVNVEKEE-------------------WKLETL-CDL 273 (413)
Q Consensus 215 ~~i~~SaT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~l-~~~ 273 (413)
|+|++|||..+. .+....+.+. +..+.. ........+... ....... .....+ ..+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVN-PPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEEC-CCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999863 3444433332 333322 222222222211 1111100 000111 122
Q ss_pred HHh-hcccceEEEEccHHHHHHHHHHhhhCC---------------------------------CeeEEecCCCCHHHHH
Q 015129 274 YET-LAITQSVIFVNTRRKVDWLTDKMRSRD---------------------------------HTVSATHGDMDQNTRD 319 (413)
Q Consensus 274 ~~~-~~~~~~lif~~~~~~~~~l~~~L~~~~---------------------------------~~~~~~~~~~~~~~r~ 319 (413)
+.. ...+++||||||+..++.++..|++.. ..+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 222 235689999999999999999887531 1256899999999999
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCC-CCcceEEEEeccCcH--HHHHHHHH
Q 015129 320 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF-GRKGVAINFVTRDDE--RMLFDIQK 396 (413)
Q Consensus 320 ~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-g~~~~~~~~~~~~~~--~~~~~~~~ 396 (413)
.+++.|++|++++||||++++.|||++++++||+++.|.+..+|+||+||+||. |..+.++++....+. .....++.
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~~~ve~ 397 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVEC 397 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 233445533332211 11223566
Q ss_pred HhccccccC
Q 015129 397 FYNVVIEEL 405 (413)
Q Consensus 397 ~~~~~~~~~ 405 (413)
+++...+++
T Consensus 398 ~l~g~iE~~ 406 (1490)
T PRK09751 398 MFAGRLENL 406 (1490)
T ss_pred HhcCCCCcc
Confidence 777766653
No 54
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=7.1e-42 Score=306.28 Aligned_cols=339 Identities=20% Similarity=0.229 Sum_probs=269.5
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhh-hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCc
Q 015129 39 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 117 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~ 117 (413)
..+.+++.+++.+...++..|+..+.|.|..+++. +++|.|.+++.+|+||||++.-++-+..+..+. .+.||+||.
T Consensus 193 r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g--~KmlfLvPL 270 (830)
T COG1202 193 RVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGG--KKMLFLVPL 270 (830)
T ss_pred cccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCC--CeEEEEehh
Confidence 34678899999999999999999999999999998 889999999999999999999887777666532 399999999
Q ss_pred HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHH----HHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchH
Q 015129 118 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR----ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 193 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~ 193 (413)
.+||+|.++.|++....+++.+.+-.|......... .....+||||+|++.+..+++.+ ..+.+++.||+||+|.
T Consensus 271 VALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHt 349 (830)
T COG1202 271 VALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHT 349 (830)
T ss_pred HHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeee
Confidence 999999999999988888999988887666544432 12346899999999998777776 6788899999999999
Q ss_pred HhccCcHHHHHHHHh---hCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHH
Q 015129 194 MLSRGFKDQIYDIFQ---LLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETL 270 (413)
Q Consensus 194 ~~~~~~~~~~~~~~~---~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 270 (413)
+.+...+..+..++. .+-+..|+|++|||..+. .++.+.+..+.+.+...+. .+............+.+.+
T Consensus 350 L~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~RPV-----plErHlvf~~~e~eK~~ii 423 (830)
T COG1202 350 LEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDERPV-----PLERHLVFARNESEKWDII 423 (830)
T ss_pred ccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecCCCC-----ChhHeeeeecCchHHHHHH
Confidence 887655544433332 233489999999998754 3555555555544332222 2233333444455677777
Q ss_pred HHHHHhh--------cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Q 015129 271 CDLYETL--------AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 271 ~~~~~~~--------~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
..+.+.. -.+.+|||++|+..+..+++.|...|+++..||++++-.+|..+...|.++++.++|+|.+++.|
T Consensus 424 ~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AG 503 (830)
T COG1202 424 ARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAG 503 (830)
T ss_pred HHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcC
Confidence 7776543 23589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEE---Ecc-CCCChhhHHHhhhhccCCCC--cceEEEEeccC
Q 015129 343 IDVQQVSLVI---NYD-LPTQPENYLHRIGRSGRFGR--KGVAINFVTRD 386 (413)
Q Consensus 343 ~d~~~~~~vi---~~~-~~~s~~~~~Q~~GR~~R~g~--~~~~~~~~~~~ 386 (413)
+|+|.-.+++ -++ -..|+.+|.||.||+||.+- .|.+|+++.+.
T Consensus 504 VDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 504 VDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred CCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9998544432 122 34589999999999999863 48899888876
No 55
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=7.2e-40 Score=312.16 Aligned_cols=300 Identities=15% Similarity=0.139 Sum_probs=216.2
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEE
Q 015129 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
..|+++|.++++.++.+++.++++|||+|||.++...+...+. . ...++||+||+++|+.||.+.+.++.......+.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~-~-~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLE-N-YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh-c-CCCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 4899999999999999999999999999999976543322222 2 2238999999999999999999998654344444
Q ss_pred EEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 141 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
.+.++.... ...+|+|+|++++.+... ..+.++++||+||||++.... +..++..+++..+++++|
T Consensus 191 ~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~~lGLT 256 (501)
T PHA02558 191 KIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKS----LTSIITKLDNCKFKFGLT 256 (501)
T ss_pred EEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccchh----HHHHHHhhhccceEEEEe
Confidence 455544321 347899999999875432 245678999999999986543 456666666677899999
Q ss_pred eeCCHhHHHH--HHHhcCCCEEEEecCCccc------ccCeEEEEE--------------------EeccccchHHHHHH
Q 015129 221 ATMPPEALEI--TRKFMNKPVRILVKRDELT------LEGIKQFYV--------------------NVEKEEWKLETLCD 272 (413)
Q Consensus 221 aT~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--------------------~~~~~~~~~~~l~~ 272 (413)
|||....... ...+++. +.......... ...+..... .......+...+..
T Consensus 257 ATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~ 335 (501)
T PHA02558 257 GSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIAN 335 (501)
T ss_pred ccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHH
Confidence 9996432111 1112221 11111100000 000000000 00011122333333
Q ss_pred HHHhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-CCCCCCCCCCCCc
Q 015129 273 LYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT-DLLARGIDVQQVS 349 (413)
Q Consensus 273 ~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t-~~~~~G~d~~~~~ 349 (413)
+.... .+.+++|||++.++++.+++.|+..+.++..+||+++..+|..+++.|++|+..+|||| +++++|+|+|+++
T Consensus 336 ~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld 415 (501)
T PHA02558 336 LALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLH 415 (501)
T ss_pred HHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccccc
Confidence 33322 35689999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred EEEEccCCCChhhHHHhhhhccCCCCcc
Q 015129 350 LVINYDLPTQPENYLHRIGRSGRFGRKG 377 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~~ 377 (413)
+||++.++.|...|+|++||++|.+..+
T Consensus 416 ~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 416 HVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEEEecCCcchhhhhhhhhccccCCCCC
Confidence 9999999999999999999999987654
No 56
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.1e-40 Score=320.92 Aligned_cols=332 Identities=23% Similarity=0.303 Sum_probs=250.8
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhc-CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHH
Q 015129 45 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 123 (413)
Q Consensus 45 ~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 123 (413)
..+++.+...+...++..+.+.|+.++..... ++|+++++|||||||++++++++..+..+ +.+++|+||+++|+.+
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~E 91 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEE 91 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHH
Confidence 34778888888888998999999998888655 69999999999999999999999988775 3499999999999999
Q ss_pred HHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHH
Q 015129 124 IEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI 203 (413)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~ 203 (413)
.+++++ ....+|+++...+|+....... -.+++|+|+|||++...+++.......+++||+||+|.+.+...+..+
T Consensus 92 k~~~~~-~~~~~GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~l 167 (766)
T COG1204 92 KYEEFS-RLEELGIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVL 167 (766)
T ss_pred HHHHhh-hHHhcCCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCcee
Confidence 999999 4456799999999988754421 246899999999999999888878888999999999999887666666
Q ss_pred HHHHhhCC---CCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccc--cCeEEEEEEeccc-----cchHHHHHHH
Q 015129 204 YDIFQLLP---AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTL--EGIKQFYVNVEKE-----EWKLETLCDL 273 (413)
Q Consensus 204 ~~~~~~~~---~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~l~~~ 273 (413)
+.+..+.+ ...|++++|||.++ ..+...+...++........+... .....++...... ......+...
T Consensus 168 E~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v 246 (766)
T COG1204 168 ESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELV 246 (766)
T ss_pred hhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHH
Confidence 65554443 34799999999974 445555555554422222222211 1111121111111 1112223333
Q ss_pred HHhh-cccceEEEEccHHHHHHHHHHhhhC-------------------------------------CCeeEEecCCCCH
Q 015129 274 YETL-AITQSVIFVNTRRKVDWLTDKMRSR-------------------------------------DHTVSATHGDMDQ 315 (413)
Q Consensus 274 ~~~~-~~~~~lif~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~ 315 (413)
+... .++.+||||+|+..+...++.+... ...+.++|++++.
T Consensus 247 ~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~ 326 (766)
T COG1204 247 LESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPR 326 (766)
T ss_pred HHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCH
Confidence 3333 4569999999999998888888731 1347789999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEE----Ecc-----CCCChhhHHHhhhhccCCCCc--ceEEEEe
Q 015129 316 NTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI----NYD-----LPTQPENYLHRIGRSGRFGRK--GVAINFV 383 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi----~~~-----~~~s~~~~~Q~~GR~~R~g~~--~~~~~~~ 383 (413)
+.|..+.+.|+.|.++||+||++++.|+|+|.-+++| .++ .+.+..+++||+||+||.|-+ |.++++.
T Consensus 327 ~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 327 EDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred HHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 9999999999999999999999999999999766665 344 345778999999999999854 6666665
No 57
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-40 Score=265.64 Aligned_cols=334 Identities=41% Similarity=0.705 Sum_probs=291.5
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcH
Q 015129 39 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 118 (413)
..-|+++-|.+.+.+++-..||+.|...|.+.+|...-|-++++.|..|.|||.++.++.++.+.-......++++|.|+
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtr 120 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTR 120 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccH
Confidence 34577778999999999999999999999999999999999999999999999999999999887666667999999999
Q ss_pred HHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhc-
Q 015129 119 ELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS- 196 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~- 196 (413)
+|+-|+..++.++.... +.++.++.||.....+...+.+.++|+|+||+++..+.+++.+.+++++..|+|||+.++.
T Consensus 121 elafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~ 200 (387)
T KOG0329|consen 121 ELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQ 200 (387)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHH
Confidence 99999999888876654 6789999999999988888888899999999999999999999999999999999998763
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecC-CcccccCeEEEEEEeccccchHHHHHHHHH
Q 015129 197 RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKR-DELTLEGIKQFYVNVEKEEWKLETLCDLYE 275 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (413)
.+....++++.+..|...|+..+|||.+.++.-..+.++.+|..+.+.. ...+..++.++|..+... .+...+.+++.
T Consensus 201 lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~-eKNrkl~dLLd 279 (387)
T KOG0329|consen 201 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKEN-EKNRKLNDLLD 279 (387)
T ss_pred HHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhh-hhhhhhhhhhh
Confidence 4567889999999999999999999999999999999999997776654 445667788887776654 36666777777
Q ss_pred hhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEcc
Q 015129 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 276 ~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
...-+.++||+.+... | + | +-+ +++|+.+++|+|+..++.+++|+
T Consensus 280 ~LeFNQVvIFvKsv~R-------l--------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYd 324 (387)
T KOG0329|consen 280 VLEFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYD 324 (387)
T ss_pred hhhhcceeEeeehhhh-------h--------------h----------h---hhh-hHHhhhhccccCcccceeeeccC
Confidence 6667899999998664 1 0 2 223 88999999999999999999999
Q ss_pred CCCChhhHHHhhhhccCCCCcceEEEEecc-CcHHHHHHHHHHhccccccCCch
Q 015129 356 LPTQPENYLHRIGRSGRFGRKGVAINFVTR-DDERMLFDIQKFYNVVIEELPSN 408 (413)
Q Consensus 356 ~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 408 (413)
.|.+..+|.+|.||+||.|..|-+++++.. .|...+...++.+.....++|+.
T Consensus 325 mp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 325 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred CCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 999999999999999999999999999887 47788888899888888888875
No 58
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=4.9e-38 Score=319.82 Aligned_cols=288 Identities=23% Similarity=0.285 Sum_probs=220.8
Q ss_pred HHHHH-CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 53 RGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 53 ~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
+.+.+ .|+ .|+++|..+++.++.|++++++||||+|||..+++.+. .+. ..+.+++|++||++|+.|+.+.++.+
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~-~l~--~~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSL-YLA--KKGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHH-HHH--hcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 34433 466 89999999999999999999999999999975544333 332 23459999999999999999999999
Q ss_pred hcccCcEEEEEEcCcch-----HHHHHHHH-cCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhc---------
Q 015129 132 GDYLGVKVHACVGGTSV-----REDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS--------- 196 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~--------- 196 (413)
+...+..+..+.++... ......+. ..++|+|+||+.|.+.+. .+....++++|+||||++++
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 147 GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred hhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHH
Confidence 98888887777766542 12222223 468999999999988776 34555699999999999885
Q ss_pred --cCcH-HHHHHHHhhCCC------------------------CceEEEEEeeCCHh-HHHHHHHhcCCCEEEEecCCcc
Q 015129 197 --RGFK-DQIYDIFQLLPA------------------------KVQVGVFSATMPPE-ALEITRKFMNKPVRILVKRDEL 248 (413)
Q Consensus 197 --~~~~-~~~~~~~~~~~~------------------------~~~~i~~SaT~~~~-~~~~~~~~~~~~~~~~~~~~~~ 248 (413)
.+|. ..+..++..++. ..|++++|||.++. ... .++..+..+.+.....
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~ 301 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVF 301 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCccc
Confidence 4453 566666665543 67899999999864 322 1223333344444445
Q ss_pred cccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHH---HHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHH
Q 015129 249 TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRK---VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 325 (413)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 325 (413)
...++.+.+.... .+.+.+..+++... ..+||||++.+. ++.+++.|+..|+.+..+||++ .+.+++|
T Consensus 302 ~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 302 YLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred ccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 5677888777554 46667777776553 589999999777 9999999999999999999999 2345999
Q ss_pred hcCCCcEEEE----cCCCCCCCCCCC-CcEEEEccCCC
Q 015129 326 RSGSSRVLIT----TDLLARGIDVQQ-VSLVINYDLPT 358 (413)
Q Consensus 326 ~~~~~~vli~----t~~~~~G~d~~~-~~~vi~~~~~~ 358 (413)
++|+++|||+ |+++++|+|+|+ +++||+++.|.
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9999999999 588999999999 89999999885
No 59
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.1e-38 Score=304.98 Aligned_cols=314 Identities=18% Similarity=0.199 Sum_probs=227.3
Q ss_pred HHHHhhhhhhhcCCcEEEeCCCCCcchHHh---------HHHHHHccc---cCCCceeEEEEcCcHHHHHHHHHHHHHhh
Q 015129 65 AIQQRGIVPFCKGLDVIQQAQSGTGKTATF---------CSGILQQLD---YGLVQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 65 ~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~---------~~~~~~~~~---~~~~~~~~liv~P~~~l~~q~~~~~~~~~ 132 (413)
..|.++++.+.+|+++++.|+||||||.+. +.+.+..+. .....+++++++|+++|+.|+...+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 368899999999999999999999999873 222333221 12234589999999999999999988755
Q ss_pred cc---cCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhh
Q 015129 133 DY---LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 209 (413)
Q Consensus 133 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~ 209 (413)
.. .+..+....|+.... .........+|+++|+... ...++++++||+||||+....+ +.+..++..
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~-~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~ 316 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDE-LINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVARK 316 (675)
T ss_pred CccccCCceEEEEECCcchH-HhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHHHH
Confidence 43 356677888887632 1121223568999996521 1246778999999999975544 444444443
Q ss_pred CC-CCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEecc---------ccchHHHHHHHHHh---
Q 015129 210 LP-AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK---------EEWKLETLCDLYET--- 276 (413)
Q Consensus 210 ~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~--- 276 (413)
.. ...|+++||||++.+...+ ..++.++..+.... .....+++.+..... ...+.. +...+..
T Consensus 317 ~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~-~l~~L~~~~~ 392 (675)
T PHA02653 317 HIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEKKN-IVTALKKYTP 392 (675)
T ss_pred hhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHHHH-HHHHHHHhhc
Confidence 32 3358999999998776554 67777776666542 233455665543221 011111 2222222
Q ss_pred hcccceEEEEccHHHHHHHHHHhhhC--CCeeEEecCCCCHHHHHHHHHHH-hcCCCcEEEEcCCCCCCCCCCCCcEEEE
Q 015129 277 LAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREF-RSGSSRVLITTDLLARGIDVQQVSLVIN 353 (413)
Q Consensus 277 ~~~~~~lif~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~~~~~vli~t~~~~~G~d~~~~~~vi~ 353 (413)
..++++|||+++.+.++.+++.|++. +..+..+||++++. ++.+++| ++|+.+|||||+++++|+|+|++++||+
T Consensus 393 ~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID 470 (675)
T PHA02653 393 PKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYD 470 (675)
T ss_pred ccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEE
Confidence 23468999999999999999999887 68999999999874 4666776 6899999999999999999999999999
Q ss_pred cc---CCC---------ChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHH
Q 015129 354 YD---LPT---------QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 395 (413)
Q Consensus 354 ~~---~~~---------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 395 (413)
+| .|. |.+.|.||.||+||. .+|.|+.++++.+...+..+.
T Consensus 471 ~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 471 TGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred CCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 98 444 788999999999999 789999999988765444443
No 60
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=9.7e-38 Score=308.59 Aligned_cols=349 Identities=23% Similarity=0.334 Sum_probs=273.7
Q ss_pred CHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHH
Q 015129 48 QENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~ 127 (413)
...+...+.+.|+..|++||.+|+..+.+|+|++|+.|||||||.+|++|+++.+...... ++|++.|+++|++++.+.
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAER 134 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHH
Confidence 3445778888899999999999999999999999999999999999999999999887766 999999999999999999
Q ss_pred HHHhhcccC--cEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHc----CCCCCCcceEEEeccchHHhccC---
Q 015129 128 MRALGDYLG--VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR----QSLRPDYIKMFVLDEADEMLSRG--- 198 (413)
Q Consensus 128 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~----~~~~~~~~~~iV~DE~h~~~~~~--- 198 (413)
++++....+ +.....+|+...........++++|++|||++|...+.. ....+.++++||+||+|.+....
T Consensus 135 l~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~ 214 (851)
T COG1205 135 LRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSE 214 (851)
T ss_pred HHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhH
Confidence 999988877 777888888887777678889999999999999774533 22335668999999999754221
Q ss_pred cH---HHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEecc--------ccchH
Q 015129 199 FK---DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK--------EEWKL 267 (413)
Q Consensus 199 ~~---~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 267 (413)
.. +.+..++...+...|+|+.|||..+.. +....+.+......+. ....+...+++....+. .....
T Consensus 215 vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v~-~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~ 292 (851)
T COG1205 215 VALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVPVD-EDGSPRGLRYFVRREPPIRELAESIRRSAL 292 (851)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceeecc-CCCCCCCceEEEEeCCcchhhhhhcccchH
Confidence 11 334444455556899999999987544 5666666666555432 23333444444444441 01233
Q ss_pred HHHHHHHHhh--cccceEEEEccHHHHHHHH----HHhhhCC----CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 015129 268 ETLCDLYETL--AITQSVIFVNTRRKVDWLT----DKMRSRD----HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 337 (413)
Q Consensus 268 ~~l~~~~~~~--~~~~~lif~~~~~~~~~l~----~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~ 337 (413)
..+..+.... .+-++|+|+.+++.++.+. +.+...+ ..+..+++++...+|.++...|++|+..++++|+
T Consensus 293 ~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~ 372 (851)
T COG1205 293 AELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATN 372 (851)
T ss_pred HHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecch
Confidence 3333443332 3459999999999999886 4444445 5788999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcEEEEccCCC-ChhhHHHhhhhccCCCCcceEEEEeccC--cHHHHHHHHHHhc
Q 015129 338 LLARGIDVQQVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTRD--DERMLFDIQKFYN 399 (413)
Q Consensus 338 ~~~~G~d~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~~--~~~~~~~~~~~~~ 399 (413)
+++.|+|+..++.||..+.|. +..++.|+.||+||.++.+..+.++..+ |..+....+++++
T Consensus 373 AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 373 ALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred hhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999999999999999 9999999999999999777776666643 6666666677766
No 61
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=3.1e-38 Score=296.55 Aligned_cols=326 Identities=21% Similarity=0.281 Sum_probs=233.6
Q ss_pred CCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcE
Q 015129 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK 138 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
..-.+|++|.+.+...+ |+|++|++|||+|||+++...+..++..... .++++++|++-|+.|+...+..++.. ..
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~ 134 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIP--YS 134 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCc--cc
Confidence 44479999999999988 9999999999999999998888888776555 59999999999999999777777654 55
Q ss_pred EEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCC-CcceEEEeccchHHhc-cCcHHHHHHHHhhCCCCceE
Q 015129 139 VHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRP-DYIKMFVLDEADEMLS-RGFKDQIYDIFQLLPAKVQV 216 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~-~~~~~iV~DE~h~~~~-~~~~~~~~~~~~~~~~~~~~ 216 (413)
+....|+..............+|+|+||+.+.+.+.++.... +.|.++||||||+... ..|...+...+.......|+
T Consensus 135 ~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qI 214 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQI 214 (746)
T ss_pred ceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccE
Confidence 555666644333333445568999999999999888765554 8899999999999764 44666665666665556699
Q ss_pred EEEEeeCCHhHHHHHHHhcCCCEEEEec----------------------------------------------------
Q 015129 217 GVFSATMPPEALEITRKFMNKPVRILVK---------------------------------------------------- 244 (413)
Q Consensus 217 i~~SaT~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 244 (413)
+++||||.....+......+....+...
T Consensus 215 LgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~ 294 (746)
T KOG0354|consen 215 LGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEI 294 (746)
T ss_pred EEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcccc
Confidence 9999999854433211111000000000
Q ss_pred --------C-----Cccc--------------------------ccCeE-------------------------------
Q 015129 245 --------R-----DELT--------------------------LEGIK------------------------------- 254 (413)
Q Consensus 245 --------~-----~~~~--------------------------~~~~~------------------------------- 254 (413)
. .... ...++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~ 374 (746)
T KOG0354|consen 295 SDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIR 374 (746)
T ss_pred ccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhH
Confidence 0 0000 00000
Q ss_pred ----------EEEEEeccccchHHHHHHHH----HhhcccceEEEEccHHHHHHHHHHhhhC---CCeeEE--------e
Q 015129 255 ----------QFYVNVEKEEWKLETLCDLY----ETLAITQSVIFVNTRRKVDWLTDKMRSR---DHTVSA--------T 309 (413)
Q Consensus 255 ----------~~~~~~~~~~~~~~~l~~~~----~~~~~~~~lif~~~~~~~~~l~~~L~~~---~~~~~~--------~ 309 (413)
+.-...+....+++.+.+.+ +..+..++|||+.+++.|..+.+.|.+. ++.... -
T Consensus 375 ~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~ 454 (746)
T KOG0354|consen 375 NFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQ 454 (746)
T ss_pred HHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccccc
Confidence 00000000122444444433 2234568999999999999999999832 222222 2
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHH
Q 015129 310 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 389 (413)
Q Consensus 310 ~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 389 (413)
..+|++.++.++++.|+.|+++|||||+++++|+|++.++.||.||...++..++||+|| ||. +.|+|+.+++.....
T Consensus 455 ~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~ 532 (746)
T KOG0354|consen 455 STGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVI 532 (746)
T ss_pred ccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHH
Confidence 347899999999999999999999999999999999999999999999999999999999 998 458888888854433
Q ss_pred H
Q 015129 390 M 390 (413)
Q Consensus 390 ~ 390 (413)
.
T Consensus 533 ~ 533 (746)
T KOG0354|consen 533 E 533 (746)
T ss_pred H
Confidence 3
No 62
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.7e-37 Score=305.75 Aligned_cols=305 Identities=16% Similarity=0.265 Sum_probs=232.6
Q ss_pred HhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHH-hhcccCcEEEEEEcCc
Q 015129 68 QRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHACVGGT 146 (413)
Q Consensus 68 ~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~ 146 (413)
.+.+..+.++++++++|+||||||.++.+++++... .+++++++.|+++++.|+++.+.+ +....+..+....++.
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~ 84 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE 84 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc
Confidence 456667778899999999999999999999887653 234999999999999999998854 4444456665554443
Q ss_pred chHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchH-HhccCcHH-HHHHHHhhCCCCceEEEEEeeCC
Q 015129 147 SVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE-MLSRGFKD-QIYDIFQLLPAKVQVGVFSATMP 224 (413)
Q Consensus 147 ~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~-~~~~~~~~-~~~~~~~~~~~~~~~i~~SaT~~ 224 (413)
+ ......+|+|+|++.|.+.+... ..++++++||+||+|+ ..+.++.. .+..+...++...|+++||||++
T Consensus 85 ~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~ 157 (819)
T TIGR01970 85 N------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLD 157 (819)
T ss_pred c------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence 2 12345789999999999888764 5688899999999995 55544433 33455566777899999999998
Q ss_pred HhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchH----HHHHHHHHhhcccceEEEEccHHHHHHHHHHhh
Q 015129 225 PEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKL----ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300 (413)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~ 300 (413)
... +..++++...+...... ..+++.|.......... ..+..++.. ..+++|||+++..+++.+++.|+
T Consensus 158 ~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~ 230 (819)
T TIGR01970 158 GER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLA 230 (819)
T ss_pred HHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHH
Confidence 653 35566554444433222 23455554443322221 233333333 35789999999999999999998
Q ss_pred h---CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCC------------------C
Q 015129 301 S---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------------------Q 359 (413)
Q Consensus 301 ~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~------------------s 359 (413)
+ .+..+..+||+++.++|.++++.|.+|+.+|||||+++++|+|+|++++||+++.+. |
T Consensus 231 ~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iS 310 (819)
T TIGR01970 231 ERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRIS 310 (819)
T ss_pred hhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEEC
Confidence 7 478899999999999999999999999999999999999999999999999999864 3
Q ss_pred hhhHHHhhhhccCCCCcceEEEEeccCcHHH
Q 015129 360 PENYLHRIGRSGRFGRKGVAINFVTRDDERM 390 (413)
Q Consensus 360 ~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 390 (413)
.+.+.||.||+||. .+|.||.++++.+...
T Consensus 311 kasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 311 QASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred HHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 35689999999999 7899999999876543
No 63
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.9e-37 Score=306.20 Aligned_cols=304 Identities=17% Similarity=0.284 Sum_probs=231.3
Q ss_pred HhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHH-hhcccCcEEEEEEcCc
Q 015129 68 QRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHACVGGT 146 (413)
Q Consensus 68 ~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~ 146 (413)
.+.+..+.+++++++.||||||||.++.+++++.... .+++++++|+++++.|+++.+.+ +....+..+....++.
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~ 87 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAE 87 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCc
Confidence 3566677788999999999999999999888875432 23899999999999999999854 4455567777666654
Q ss_pred chHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHH-hccCc-HHHHHHHHhhCCCCceEEEEEeeCC
Q 015129 147 SVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM-LSRGF-KDQIYDIFQLLPAKVQVGVFSATMP 224 (413)
Q Consensus 147 ~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~-~~~~~-~~~~~~~~~~~~~~~~~i~~SaT~~ 224 (413)
+.. .....|+|+|++.|.+.+... ..++++++||+||+|.. .+.+. ...+..+...+++..|+++||||++
T Consensus 88 ~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~ 160 (812)
T PRK11664 88 SKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD 160 (812)
T ss_pred ccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCC
Confidence 321 234579999999999888764 46889999999999972 22222 1233455566778899999999998
Q ss_pred HhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHH----HHHHHHHhhcccceEEEEccHHHHHHHHHHhh
Q 015129 225 PEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLE----TLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300 (413)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~ 300 (413)
.+. +..++.....+...... ..+.+.|........... .+..++.. ..+.+|||+++..+++.+++.|+
T Consensus 161 ~~~---l~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~ 233 (812)
T PRK11664 161 NDR---LQQLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLA 233 (812)
T ss_pred HHH---HHHhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHH
Confidence 642 34566554444333221 235555554443222222 23333332 35799999999999999999998
Q ss_pred h---CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCC------------------C
Q 015129 301 S---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------------------Q 359 (413)
Q Consensus 301 ~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~------------------s 359 (413)
. .+..+..+||+++..+|.++++.|.+|+.+|||||+++++|+|++++++||+.+.+. |
T Consensus 234 ~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iS 313 (812)
T PRK11664 234 SRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRIS 313 (812)
T ss_pred HhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeec
Confidence 7 577899999999999999999999999999999999999999999999999988764 3
Q ss_pred hhhHHHhhhhccCCCCcceEEEEeccCcHH
Q 015129 360 PENYLHRIGRSGRFGRKGVAINFVTRDDER 389 (413)
Q Consensus 360 ~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 389 (413)
.+.+.||.||+||. .+|.||.++++.+..
T Consensus 314 kasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 314 QASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred hhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 45799999999999 689999999987554
No 64
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.3e-36 Score=306.91 Aligned_cols=324 Identities=21% Similarity=0.256 Sum_probs=239.2
Q ss_pred CCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcE
Q 015129 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK 138 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
+..++|++|..++..++.+ ++++++|||+|||.++++.+...+. ..+.++||++|+++|+.|+.+.++++....+..
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 3447899999999888777 8999999999999998888877663 334599999999999999999999876544557
Q ss_pred EEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEE
Q 015129 139 VHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGV 218 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (413)
+..++|+........ ...+++|+|+||+.+...+..+.....++++||+||||++........+..........+++++
T Consensus 89 v~~~~g~~~~~~r~~-~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~ 167 (773)
T PRK13766 89 IVVFTGEVSPEKRAE-LWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLG 167 (773)
T ss_pred EEEEeCCCCHHHHHH-HHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEE
Confidence 788888777654433 3446799999999998888777788888999999999998754433344444444445678999
Q ss_pred EEeeCCHhHHH---HHHHhcCCCEEEEecCCc--------------------------------------------cc-c
Q 015129 219 FSATMPPEALE---ITRKFMNKPVRILVKRDE--------------------------------------------LT-L 250 (413)
Q Consensus 219 ~SaT~~~~~~~---~~~~~~~~~~~~~~~~~~--------------------------------------------~~-~ 250 (413)
+||||...... .+..+......+...... .. .
T Consensus 168 lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~ 247 (773)
T PRK13766 168 LTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVS 247 (773)
T ss_pred EEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 99999533211 111111111000000000 00 0
Q ss_pred cC--------------eEEEE-----------------------------------------------------------
Q 015129 251 EG--------------IKQFY----------------------------------------------------------- 257 (413)
Q Consensus 251 ~~--------------~~~~~----------------------------------------------------------- 257 (413)
.. +....
T Consensus 248 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~ 327 (773)
T PRK13766 248 ISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLV 327 (773)
T ss_pred CCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHH
Confidence 00 00000
Q ss_pred ------------EEeccccchHHHHHHHHHh----hcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCC--------C
Q 015129 258 ------------VNVEKEEWKLETLCDLYET----LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGD--------M 313 (413)
Q Consensus 258 ------------~~~~~~~~~~~~l~~~~~~----~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~--------~ 313 (413)
........|.+.+.++++. ..++++||||+++..++.+.+.|...+..+..++|. +
T Consensus 328 ~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~ 407 (773)
T PRK13766 328 EDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGM 407 (773)
T ss_pred hCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCC
Confidence 0000111244445555543 456799999999999999999999999998888876 8
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCc
Q 015129 314 DQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 314 ~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 387 (413)
++.+|.++++.|++|+.++||+|+++++|+|+|.+++||+|++|++...|+||+||+||.|. |.++++++.+.
T Consensus 408 ~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 408 SQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 89999999999999999999999999999999999999999999999999999999999865 88888888753
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=6.2e-38 Score=289.61 Aligned_cols=301 Identities=16% Similarity=0.180 Sum_probs=205.6
Q ss_pred cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchH---------
Q 015129 79 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR--------- 149 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 149 (413)
++++.+|||||||.+++++++..+... ...+++|++|+++|+.|+.+.+..+... .+..+++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 479999999999999999999876543 3449999999999999999999987432 334444432210
Q ss_pred ---HHHHHH------HcCCcEEEEccHHHHHHHHcCCCC------CCcceEEEeccchHHhccCcHHHHHHHHhhC-CCC
Q 015129 150 ---EDQRIL------QAGVHVVVGTPGRVFDMLRRQSLR------PDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAK 213 (413)
Q Consensus 150 ---~~~~~~------~~~~~iii~T~~~l~~~~~~~~~~------~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~-~~~ 213 (413)
...... ....+|+++||+++...+...... .-..++||+||+|.+.+..+.. +..++..+ ..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~ 155 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDND 155 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcC
Confidence 000000 123579999999998776542110 1113789999999987654333 44444433 346
Q ss_pred ceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEE-EeccccchHHHHHHHHHhh-cccceEEEEccHHH
Q 015129 214 VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYV-NVEKEEWKLETLCDLYETL-AITQSVIFVNTRRK 291 (413)
Q Consensus 214 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~lif~~~~~~ 291 (413)
.|++++|||++....+.................... ....+.+. .......+...+..+++.. .++++||||++++.
T Consensus 156 ~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 156 VPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred CCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHH
Confidence 889999999986665555444322111111100000 00112211 1112223455555555543 46799999999999
Q ss_pred HHHHHHHhhhCCC--eeEEecCCCCHHHHHH----HHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHH
Q 015129 292 VDWLTDKMRSRDH--TVSATHGDMDQNTRDI----IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 365 (413)
Q Consensus 292 ~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q 365 (413)
++.+++.|++.+. .+..+||++++.+|.+ +++.|++|+.++||||+++++|+|++ +++||.+..| ...|+|
T Consensus 235 ~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iq 311 (358)
T TIGR01587 235 AQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQ 311 (358)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHH
Confidence 9999999988765 5899999999999976 48899999999999999999999995 7888877655 789999
Q ss_pred hhhhccCCCCc----ceEEEEeccCcH
Q 015129 366 RIGRSGRFGRK----GVAINFVTRDDE 388 (413)
Q Consensus 366 ~~GR~~R~g~~----~~~~~~~~~~~~ 388 (413)
|+||+||.|+. |.++++...++.
T Consensus 312 r~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 312 RLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred HhccccCCCCCCCCCCeEEEEeecCCC
Confidence 99999998754 367777765543
No 66
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.3e-37 Score=296.42 Aligned_cols=317 Identities=15% Similarity=0.127 Sum_probs=221.7
Q ss_pred CCCcHHHHhhhhhhhc-C--CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 61 EKPSAIQQRGIVPFCK-G--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~-~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
..+||+|.+++..+.. | ++.++++|||+|||++++.++... +.++||+||+..|+.||.+++.++......
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~~~ 327 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS 327 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc
Confidence 4699999999999874 3 478999999999999987665532 238999999999999999999998654455
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHc--------CCCCCCcceEEEeccchHHhccCcHHHHHHHHhh
Q 015129 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR--------QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 209 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~--------~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~ 209 (413)
.+..++|+.... .....+|+|+|++++...... ..+....+++||+||||++.. .....++..
T Consensus 328 ~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~ 398 (732)
T TIGR00603 328 QICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTI 398 (732)
T ss_pred eEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHh
Confidence 666666653321 112368999999987532211 112234578999999999844 344455555
Q ss_pred CCCCceEEEEEeeCCHhHH--HHHHHhcCCCEEEEecCC------cccccCeEEEEEEec--------------------
Q 015129 210 LPAKVQVGVFSATMPPEAL--EITRKFMNKPVRILVKRD------ELTLEGIKQFYVNVE-------------------- 261 (413)
Q Consensus 210 ~~~~~~~i~~SaT~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-------------------- 261 (413)
+. ....+++||||..+.. ..+..+++ |..+...-. ...+......+..+.
T Consensus 399 l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~ 476 (732)
T TIGR00603 399 VQ-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYV 476 (732)
T ss_pred cC-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhh
Confidence 54 3347999999964221 12222222 222111100 000100011111111
Q ss_pred cccchHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEcCC
Q 015129 262 KEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG-SSRVLITTDL 338 (413)
Q Consensus 262 ~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t~~ 338 (413)
....+...+..+++.+ .+.++||||.+...+..+++.| .+..+||+++..+|.++++.|++| .+++||+|++
T Consensus 477 ~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkV 551 (732)
T TIGR00603 477 MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKV 551 (732)
T ss_pred hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecc
Confidence 1223556666666655 6679999999999999998887 256789999999999999999865 7899999999
Q ss_pred CCCCCCCCCCcEEEEccCC-CChhhHHHhhhhccCCCCcceE-------EEEeccCcH--HHHHHHHHHhc
Q 015129 339 LARGIDVQQVSLVINYDLP-TQPENYLHRIGRSGRFGRKGVA-------INFVTRDDE--RMLFDIQKFYN 399 (413)
Q Consensus 339 ~~~G~d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g~~~~~-------~~~~~~~~~--~~~~~~~~~~~ 399 (413)
+.+|+|+|++++||+++.| .|..+|+||+||++|.+..|.+ |.+++++.. ....+-++++-
T Consensus 552 gdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 552 GDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred cccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHH
Confidence 9999999999999999987 4999999999999998765544 888888744 44455556654
No 67
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.6e-36 Score=314.91 Aligned_cols=325 Identities=18% Similarity=0.189 Sum_probs=243.6
Q ss_pred HHHHHHHH-CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHH
Q 015129 50 NLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 50 ~~~~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~ 128 (413)
.+.+.+++ .|+ .|++.|..+++.+++|+++++.||||+|||++++++++.... .+.+++|++||++|+.|+.+.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHHH
Confidence 34456655 799 799999999999999999999999999999966655544322 3348999999999999999999
Q ss_pred HHhhccc--CcEEEEEEcCcchHHHHH---HH-HcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhc------
Q 015129 129 RALGDYL--GVKVHACVGGTSVREDQR---IL-QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS------ 196 (413)
Q Consensus 129 ~~~~~~~--~~~~~~~~~~~~~~~~~~---~~-~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~------ 196 (413)
+.++... +..+..++|+........ .+ ...++|+|+||+.+.+.+... ...+++++|+||||+++.
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccccccccc
Confidence 9987765 456677888877655432 22 345899999999988766542 126689999999999875
Q ss_pred -----cCcHHHHHH----HHh----------------------hCCCCce-EEEEEeeCCHhHHHHHHHhcCCCEEEEec
Q 015129 197 -----RGFKDQIYD----IFQ----------------------LLPAKVQ-VGVFSATMPPEALEITRKFMNKPVRILVK 244 (413)
Q Consensus 197 -----~~~~~~~~~----~~~----------------------~~~~~~~-~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 244 (413)
.+|...+.. ++. .++...+ .+.+|||.++.. ....++..+..+.+.
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l~f~v~ 298 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELLGFEVG 298 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCeEEEec
Confidence 355544432 221 2334445 567999998531 112334555556666
Q ss_pred CCcccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHH---HHHHHHHhhhCCCeeEEecCCCCHHHHHHH
Q 015129 245 RDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRK---VDWLTDKMRSRDHTVSATHGDMDQNTRDII 321 (413)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 321 (413)
.......++.+.+....... + ..+..+++.. +..+||||++.+. ++.+++.|...|+.+..+||+ |...
T Consensus 299 ~~~~~lr~i~~~yi~~~~~~-k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~ 370 (1638)
T PRK14701 299 SGRSALRNIVDVYLNPEKII-K-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKG 370 (1638)
T ss_pred CCCCCCCCcEEEEEECCHHH-H-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHH
Confidence 66566678888877554322 2 4666777665 5689999999775 589999999999999999995 8899
Q ss_pred HHHHhcCCCcEEEEcC----CCCCCCCCCC-CcEEEEccCCC---ChhhHHHhh-------------hhccCCCCcceEE
Q 015129 322 MREFRSGSSRVLITTD----LLARGIDVQQ-VSLVINYDLPT---QPENYLHRI-------------GRSGRFGRKGVAI 380 (413)
Q Consensus 322 ~~~f~~~~~~vli~t~----~~~~G~d~~~-~~~vi~~~~~~---s~~~~~Q~~-------------GR~~R~g~~~~~~ 380 (413)
++.|++|+++|||||. .+++|||+|+ +++||++|.|. +...|.|.. ||++|.|.++.++
T Consensus 371 l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~ 450 (1638)
T PRK14701 371 FDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGV 450 (1638)
T ss_pred HHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhH
Confidence 9999999999999994 7899999998 99999999999 777666655 9999999887776
Q ss_pred EEeccCcHHH
Q 015129 381 NFVTRDDERM 390 (413)
Q Consensus 381 ~~~~~~~~~~ 390 (413)
..+...+...
T Consensus 451 ~~~~~~~~~~ 460 (1638)
T PRK14701 451 LDVFPEDVEF 460 (1638)
T ss_pred HHhHHHHHHH
Confidence 4444444333
No 68
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=7.4e-37 Score=290.98 Aligned_cols=325 Identities=20% Similarity=0.284 Sum_probs=238.5
Q ss_pred HCCCCCCcHHHHhhhhhhhc-CCcEEEeCCCCCcchHHhHHHHHHcccc-------CCCceeEEEEcCcHHHHHHHHHHH
Q 015129 57 AYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDY-------GLVQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~i~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~-------~~~~~~~liv~P~~~l~~q~~~~~ 128 (413)
-++|..+..+|+.++|...+ +.|.+||||||||||.++++.+++.+.. .+.+.+++||+|+++||.++.+.|
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 46788899999999999776 7899999999999999999999999875 233459999999999999999999
Q ss_pred HHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCC---CCCCcceEEEeccchHHhccCcHHHHHH
Q 015129 129 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS---LRPDYIKMFVLDEADEMLSRGFKDQIYD 205 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~---~~~~~~~~iV~DE~h~~~~~~~~~~~~~ 205 (413)
.+-....|+.+..++|+....... -..++|+|+|||++.-.-++.. ..++.++++|+||+|.+-+. .+..++.
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEt 260 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLET 260 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHH
Confidence 988888899999999998765544 2358999999999954444322 23566899999999976543 4656655
Q ss_pred HHhhC-------CCCceEEEEEeeCCHhHHHHHHHhcCC-CEEEEecCCcccccCeEEEEEEeccc--cc--------hH
Q 015129 206 IFQLL-------PAKVQVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFYVNVEKE--EW--------KL 267 (413)
Q Consensus 206 ~~~~~-------~~~~~~i~~SaT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~ 267 (413)
+..+. ....+++++|||+|+ ..+....+--+ +..+..-...+.+-.+.+.+.-.... .. ..
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 55443 457899999999975 33433333332 23333334444444444444333322 11 12
Q ss_pred HHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhC-----------------------CCeeEEecCCCCHHHHHHHHHH
Q 015129 268 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR-----------------------DHTVSATHGDMDQNTRDIIMRE 324 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~-----------------------~~~~~~~~~~~~~~~r~~~~~~ 324 (413)
+.+.+.++ .+..++|||.++..+...++.|.+. ......+|++|..++|.-+.+.
T Consensus 340 ~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 340 DKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 22222222 4569999999999988888888653 1346789999999999999999
Q ss_pred HhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCC-----------CChhhHHHhhhhccCCC--CcceEEEEeccCcHH
Q 015129 325 FRSGSSRVLITTDLLARGIDVQQVSLVINYDLP-----------TQPENYLHRIGRSGRFG--RKGVAINFVTRDDER 389 (413)
Q Consensus 325 f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~-----------~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~~~~ 389 (413)
|..|.++||+||++++.|+|+|.-.++| -+.+ .++.+.+|..|||||.+ ..|.++++-+.+...
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViI-KGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVII-KGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEe-cCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHH
Confidence 9999999999999999999998554444 3322 25677899999999964 457888776665433
No 69
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2.4e-35 Score=300.67 Aligned_cols=290 Identities=21% Similarity=0.257 Sum_probs=213.1
Q ss_pred HHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015129 51 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 51 ~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~ 130 (413)
+.+.+.+.....|+++|..+++.++.|++++++||||+|||..++ ++...+.. .+++++|++||++|+.|+.+.+..
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l-~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGL-AMSLFLAK--KGKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH-HHHHHHHh--cCCeEEEEeCHHHHHHHHHHHHHH
Confidence 344454444458999999999999999999999999999997544 44333322 245999999999999999999999
Q ss_pred hhcccCcEEE---EEEcCcchHHHHH---H-HHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhc-------
Q 015129 131 LGDYLGVKVH---ACVGGTSVREDQR---I-LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS------- 196 (413)
Q Consensus 131 ~~~~~~~~~~---~~~~~~~~~~~~~---~-~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~------- 196 (413)
+....++... .++|+........ . ...+++|+|+||+.|.+.+.... . +++++|+||||++.+
T Consensus 144 l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k~vd~ 220 (1171)
T TIGR01054 144 LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASKNVDK 220 (1171)
T ss_pred HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccccHHH
Confidence 9877665443 4677776554322 2 23458999999999988776522 2 689999999999987
Q ss_pred ----cCcHHH-HHHHH----------------------hhCCCCce--EEEEEeeC-CHhHHHHHHHhcCCCEEEEecCC
Q 015129 197 ----RGFKDQ-IYDIF----------------------QLLPAKVQ--VGVFSATM-PPEALEITRKFMNKPVRILVKRD 246 (413)
Q Consensus 197 ----~~~~~~-~~~~~----------------------~~~~~~~~--~i~~SaT~-~~~~~~~~~~~~~~~~~~~~~~~ 246 (413)
.+|... +..++ ...+...| ++++|||. +..... .++.....+.+...
T Consensus 221 il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~ 297 (1171)
T TIGR01054 221 LLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGG 297 (1171)
T ss_pred HHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecCc
Confidence 345432 33322 22333434 66789994 433222 23344444555555
Q ss_pred cccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccH---HHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHH
Q 015129 247 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTR---RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 323 (413)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 323 (413)
.....++.+.+..... +.+.+..+++.. +..+||||++. +.++.+++.|...|+.+..+||+++ ..+++
T Consensus 298 ~~~~r~I~~~~~~~~~---~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~ 369 (1171)
T TIGR01054 298 SDTLRNVVDVYVEDED---LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYE 369 (1171)
T ss_pred cccccceEEEEEeccc---HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHH
Confidence 5556777777764332 244566666654 46899999999 9999999999999999999999987 36899
Q ss_pred HHhcCCCcEEEEc----CCCCCCCCCCC-CcEEEEccCC
Q 015129 324 EFRSGSSRVLITT----DLLARGIDVQQ-VSLVINYDLP 357 (413)
Q Consensus 324 ~f~~~~~~vli~t----~~~~~G~d~~~-~~~vi~~~~~ 357 (413)
.|++|+++||||| +++++|+|+|+ +++||++|.|
T Consensus 370 ~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 370 KFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 9999999999995 89999999999 8999997765
No 70
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.9e-35 Score=280.12 Aligned_cols=318 Identities=20% Similarity=0.224 Sum_probs=240.4
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|..+++.+++|+ |..+.||+|||+++.++++.....+ ..++|++||+.||.|.++++..+...+|+
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G---~~v~VvTptreLA~qdae~~~~l~~~lGl 173 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAG---LPVHVITVNDYLAERDAELMRPLYEALGL 173 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcC---CeEEEEcCcHHHHHHHHHHHHHHHhhcCC
Confidence 365 89999999999999999 9999999999999999998776544 49999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHcCCC-------------------------CCCcceEEEeccc
Q 015129 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQSL-------------------------RPDYIKMFVLDEA 191 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~~~-------------------------~~~~~~~iV~DE~ 191 (413)
++..+.|+.+.. .+....+++|+++|...| +++++.... -...+.+.|+||+
T Consensus 174 sv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEv 251 (656)
T PRK12898 174 TVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEA 251 (656)
T ss_pred EEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecc
Confidence 999999987643 333345789999999877 455543211 1234678999999
Q ss_pred hHHh-ccC----------------------------------cH---------------HHHHHHHhhCC----------
Q 015129 192 DEML-SRG----------------------------------FK---------------DQIYDIFQLLP---------- 211 (413)
Q Consensus 192 h~~~-~~~----------------------------------~~---------------~~~~~~~~~~~---------- 211 (413)
|.++ |.. |. ..++.++..++
T Consensus 252 DSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~ 331 (656)
T PRK12898 252 DSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRRE 331 (656)
T ss_pred cceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHH
Confidence 9643 100 00 00000000000
Q ss_pred ---------------------------------------------------------------------------CCceE
Q 015129 212 ---------------------------------------------------------------------------AKVQV 216 (413)
Q Consensus 212 ---------------------------------------------------------------------------~~~~~ 216 (413)
--.++
T Consensus 332 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl 411 (656)
T PRK12898 332 ELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRL 411 (656)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHH
Confidence 00467
Q ss_pred EEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhh--cccceEEEEccHHHHHH
Q 015129 217 GVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDW 294 (413)
Q Consensus 217 i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~ 294 (413)
.+||||......++...+...++.+........ ...+.+... +...+...+.+.+... .+.++||||++.+.++.
T Consensus 412 ~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r--~~~~~~v~~-t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~ 488 (656)
T PRK12898 412 AGMTGTAREVAGELWSVYGLPVVRIPTNRPSQR--RHLPDEVFL-TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASER 488 (656)
T ss_pred hcccCcChHHHHHHHHHHCCCeEEeCCCCCccc--eecCCEEEe-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 799999987776666666666655554443322 122223322 3445777888877654 35689999999999999
Q ss_pred HHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCC---CCc-----EEEEccCCCChhhHHHh
Q 015129 295 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ---QVS-----LVINYDLPTQPENYLHR 366 (413)
Q Consensus 295 l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~---~~~-----~vi~~~~~~s~~~~~Q~ 366 (413)
+++.|...|+.+..+||+++ .|+..+..+..++..|+|||+++++|+|++ ++. +||+++.|.+...|.|+
T Consensus 489 L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr 566 (656)
T PRK12898 489 LSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQL 566 (656)
T ss_pred HHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHh
Confidence 99999999999999999865 445555556666678999999999999999 565 99999999999999999
Q ss_pred hhhccCCCCcceEEEEeccCcH
Q 015129 367 IGRSGRFGRKGVAINFVTRDDE 388 (413)
Q Consensus 367 ~GR~~R~g~~~~~~~~~~~~~~ 388 (413)
+||+||.|.+|.++++++..|.
T Consensus 567 ~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 567 AGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred cccccCCCCCeEEEEEechhHH
Confidence 9999999999999999998664
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.8e-35 Score=283.54 Aligned_cols=317 Identities=15% Similarity=0.148 Sum_probs=226.5
Q ss_pred CcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEE
Q 015129 63 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC 142 (413)
Q Consensus 63 ~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 142 (413)
++|+|.+++..+.-++..++.++||+|||+++.+|++.....+ ..++|++|++.|+.|+++++..+...+|+++...
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g---~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~ 145 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTG---KGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLG 145 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcC---CceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 3444555555444444479999999999999999976555443 3799999999999999999999999999999887
Q ss_pred EcCcc---hHHHHHHHHcCCcEEEEccHHH-HHHHHc------CCCCCCcceEEEeccchHHhc-cC-------------
Q 015129 143 VGGTS---VREDQRILQAGVHVVVGTPGRV-FDMLRR------QSLRPDYIKMFVLDEADEMLS-RG------------- 198 (413)
Q Consensus 143 ~~~~~---~~~~~~~~~~~~~iii~T~~~l-~~~~~~------~~~~~~~~~~iV~DE~h~~~~-~~------------- 198 (413)
.++.. .....+....+++|+++||+.| .+.+.. .......+.++|+||||.++- ..
T Consensus 146 ~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~ 225 (762)
T TIGR03714 146 VVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQ 225 (762)
T ss_pred ECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccc
Confidence 76522 2222333345799999999999 555532 223456788999999998642 00
Q ss_pred --cHHHHHHHHhhCC-----------------------------------------------------------------
Q 015129 199 --FKDQIYDIFQLLP----------------------------------------------------------------- 211 (413)
Q Consensus 199 --~~~~~~~~~~~~~----------------------------------------------------------------- 211 (413)
.......+...+.
T Consensus 226 ~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~ 305 (762)
T TIGR03714 226 SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTN 305 (762)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEEC
Confidence 0000000000000
Q ss_pred ----------------------------------------------------CCceEEEEEeeCCHhHHHHHHHhcCCCE
Q 015129 212 ----------------------------------------------------AKVQVGVFSATMPPEALEITRKFMNKPV 239 (413)
Q Consensus 212 ----------------------------------------------------~~~~~i~~SaT~~~~~~~~~~~~~~~~~ 239 (413)
--.++.+||+|...+..++. ..++..+
T Consensus 306 ~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~-~iY~l~v 384 (762)
T TIGR03714 306 GEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI-ETYSLSV 384 (762)
T ss_pred CEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH-HHhCCCE
Confidence 00467788888766555554 4444443
Q ss_pred EEEecCCcccccCeEEEEEEeccccchHHHHHHHHHh--hcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHH
Q 015129 240 RILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNT 317 (413)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 317 (413)
.......+.........++ .+...+...+...+.. ..+.++||||++.+.++.+++.|.+.|+.+..+||++.+.+
T Consensus 385 ~~IPt~kp~~r~d~~d~i~--~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E 462 (762)
T TIGR03714 385 VKIPTNKPIIRIDYPDKIY--ATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKE 462 (762)
T ss_pred EEcCCCCCeeeeeCCCeEE--ECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHH
Confidence 3322222221111111222 2234577777777655 35679999999999999999999999999999999999888
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCCCCC---------CCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcH
Q 015129 318 RDIIMREFRSGSSRVLITTDLLARGIDVQ---------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 388 (413)
Q Consensus 318 r~~~~~~f~~~~~~vli~t~~~~~G~d~~---------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 388 (413)
+..+.+.++.| .|+|||+++++|+|++ ++++|+.++.|....+ .|+.||+||.|.+|.++.+++..|.
T Consensus 463 ~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 463 AQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred HHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 87777766666 7999999999999999 8999999999988766 9999999999999999999988654
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=4.1e-35 Score=267.55 Aligned_cols=289 Identities=15% Similarity=0.226 Sum_probs=199.2
Q ss_pred HHHhhhhhhhcCCc--EEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhccc----CcEE
Q 015129 66 IQQRGIVPFCKGLD--VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL----GVKV 139 (413)
Q Consensus 66 ~Q~~~~~~i~~~~~--~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~----~~~~ 139 (413)
||.++++.+.++++ +++++|||||||.+++++++.. ..+++|++|+++|+.|+.+.++++.... +..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 69999999998764 7899999999999999888742 2378999999999999999998876432 4555
Q ss_pred EEEEcCcchH--H------------------HHHHHHcCCcEEEEccHHHHHHHHcCCC--------CCCcceEEEeccc
Q 015129 140 HACVGGTSVR--E------------------DQRILQAGVHVVVGTPGRVFDMLRRQSL--------RPDYIKMFVLDEA 191 (413)
Q Consensus 140 ~~~~~~~~~~--~------------------~~~~~~~~~~iii~T~~~l~~~~~~~~~--------~~~~~~~iV~DE~ 191 (413)
..+.|....+ . ........+.|++|||+.|..+++.... .+..+++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 5555542211 0 0011124678999999999766543211 1467899999999
Q ss_pred hHHhccCcH-----HHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHh--cCCCEEEEecCCc-----------------
Q 015129 192 DEMLSRGFK-----DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKF--MNKPVRILVKRDE----------------- 247 (413)
Q Consensus 192 h~~~~~~~~-----~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~--~~~~~~~~~~~~~----------------- 247 (413)
|.+...... .....++.......+++++|||+++.....+... .+.+........-
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 987643311 1222333333345789999999998877766654 3333322111100
Q ss_pred -ccccCeEEEEEEeccccchHHHHHH-------HHHhhcccceEEEEccHHHHHHHHHHhhhCC--CeeEEecCCCCHHH
Q 015129 248 -LTLEGIKQFYVNVEKEEWKLETLCD-------LYETLAITQSVIFVNTRRKVDWLTDKMRSRD--HTVSATHGDMDQNT 317 (413)
Q Consensus 248 -~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~ 317 (413)
...+.+.+.+.. ....+...+.. .++...++++||||++++.++.+++.|++.+ ..+..+||.+++.+
T Consensus 235 ~~~~~~i~~~~~~--~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~ 312 (357)
T TIGR03158 235 RPVLPPVELELIP--APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKD 312 (357)
T ss_pred ceeccceEEEEEe--CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHH
Confidence 001234444433 11222222222 2222356799999999999999999999864 56788999999998
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhcc
Q 015129 318 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSG 371 (413)
Q Consensus 318 r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 371 (413)
|.+. ++.+|||||+++++|+|++.. +|| ++ |.+...|+||+||+|
T Consensus 313 R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 313 RERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 8654 378999999999999999876 566 44 889999999999986
No 73
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.3e-35 Score=288.50 Aligned_cols=331 Identities=19% Similarity=0.213 Sum_probs=258.9
Q ss_pred HHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhc
Q 015129 54 GIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 54 ~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~ 133 (413)
....+|...+|+-|.+++..++.|+++++.+|||.||+++|.+|++-. ++-.|||.|..+|++.+...+..
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L~~--- 326 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHLSK--- 326 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhhhh---
Confidence 335689999999999999999999999999999999999997776432 22889999999999887777743
Q ss_pred ccCcEEEEEEcCcchHHHHH---HH-Hc--CCcEEEEccHHHHHHHH--cCCCCCCc---ceEEEeccchHHhccC--cH
Q 015129 134 YLGVKVHACVGGTSVREDQR---IL-QA--GVHVVVGTPGRVFDMLR--RQSLRPDY---IKMFVLDEADEMLSRG--FK 200 (413)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~---~~-~~--~~~iii~T~~~l~~~~~--~~~~~~~~---~~~iV~DE~h~~~~~~--~~ 200 (413)
.++....+.++....+... .+ .. ..+|+..|||++...-. .....+.. +.++|+||||....++ |.
T Consensus 327 -~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFR 405 (941)
T KOG0351|consen 327 -KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFR 405 (941)
T ss_pred -cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhccccc
Confidence 3677788887777643322 22 23 57899999998743211 11112222 7899999999998766 33
Q ss_pred ---HHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhh
Q 015129 201 ---DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL 277 (413)
Q Consensus 201 ---~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
..+..+..+++. ..++++|||....+...+...++..... ........+++...+............+...-...
T Consensus 406 p~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~-~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~ 483 (941)
T KOG0351|consen 406 PSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPE-LFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRH 483 (941)
T ss_pred HHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcc-eecccCCCCCceEEEEeccCccchHHHHHHhhhcC
Confidence 444555555554 6799999999988877766666544322 33344555666655554443233334444444455
Q ss_pred cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCC
Q 015129 278 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 357 (413)
.....||||.++.+++.+...|...++.+..||++|+..+|..+.+.|..++++|++||=+++.|+|-|+++.|||++.|
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lP 563 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLP 563 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCc
Confidence 77799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHH
Q 015129 358 TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 396 (413)
Q Consensus 358 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 396 (413)
.+.+.|.|-+||+||.|....|++|+...|...++.+..
T Consensus 564 ks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 564 KSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred hhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 999999999999999999999999999998777666543
No 74
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.2e-35 Score=283.62 Aligned_cols=318 Identities=18% Similarity=0.216 Sum_probs=237.0
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|..+...+.+|+ +..+.||+|||+++.+|++.....+. .++|++||..||.|.++++..+...+|+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~---~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGK---GVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCC---CeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 366 89999999998888877 99999999999999999875554444 9999999999999999999999999999
Q ss_pred EEEEEEcCcc-hHHHHHHHHcCCcEEEEccHHH-HHHHHcCC------CCCCcceEEEeccchHHh-ccC----------
Q 015129 138 KVHACVGGTS-VREDQRILQAGVHVVVGTPGRV-FDMLRRQS------LRPDYIKMFVLDEADEML-SRG---------- 198 (413)
Q Consensus 138 ~~~~~~~~~~-~~~~~~~~~~~~~iii~T~~~l-~~~~~~~~------~~~~~~~~iV~DE~h~~~-~~~---------- 198 (413)
++..+.|+.+ ...... ...++|+++||..| .++++... .....+.++|+||+|.++ +..
T Consensus 149 ~v~~i~g~~~~~~~r~~--~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~ 226 (790)
T PRK09200 149 TVGLNFSDIDDASEKKA--IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKP 226 (790)
T ss_pred eEEEEeCCCCcHHHHHH--hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCC
Confidence 9999999887 333332 34689999999888 55554321 244668899999999644 100
Q ss_pred -----cHHHHHHHHhhCCC-------------------------------------------------------------
Q 015129 199 -----FKDQIYDIFQLLPA------------------------------------------------------------- 212 (413)
Q Consensus 199 -----~~~~~~~~~~~~~~------------------------------------------------------------- 212 (413)
....+..+...+..
T Consensus 227 ~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYi 306 (790)
T PRK09200 227 RVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYI 306 (790)
T ss_pred ccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEE
Confidence 00000000000000
Q ss_pred --------------------------------------------------------CceEEEEEeeCCHhHHHHHHHhcC
Q 015129 213 --------------------------------------------------------KVQVGVFSATMPPEALEITRKFMN 236 (413)
Q Consensus 213 --------------------------------------------------------~~~~i~~SaT~~~~~~~~~~~~~~ 236 (413)
-.++.+||+|...+..++ ...++
T Consensus 307 V~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~-~~~Y~ 385 (790)
T PRK09200 307 VYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF-FEVYN 385 (790)
T ss_pred EECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH-HHHhC
Confidence 045778888876555444 44444
Q ss_pred CCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHh--hcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCC
Q 015129 237 KPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 314 (413)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 314 (413)
-.+.......+.........+. .+...+...+...+.. ..+.++||||++.+.++.++..|...|+.+..+||++.
T Consensus 386 l~v~~IPt~kp~~r~d~~~~i~--~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~ 463 (790)
T PRK09200 386 MEVVQIPTNRPIIRIDYPDKVF--VTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA 463 (790)
T ss_pred CcEEECCCCCCcccccCCCeEE--cCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 4433222222211112221222 2334577778777755 35679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCCCCCC---CCCc-----EEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccC
Q 015129 315 QNTRDIIMREFRSGSSRVLITTDLLARGIDV---QQVS-----LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 315 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~---~~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 386 (413)
..++..+...+..| +|+|||+++++|+|+ +.+. +||+++.|.+...|.|+.||+||.|.+|.++.+++..
T Consensus 464 ~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 464 AKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred HHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 88887777776655 799999999999999 5888 9999999999999999999999999999999999886
Q ss_pred cH
Q 015129 387 DE 388 (413)
Q Consensus 387 ~~ 388 (413)
|.
T Consensus 542 D~ 543 (790)
T PRK09200 542 DD 543 (790)
T ss_pred HH
Confidence 54
No 75
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.2e-34 Score=276.02 Aligned_cols=320 Identities=21% Similarity=0.260 Sum_probs=240.5
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|..+...+.+|+ +..++||+|||+++.++++-....+. .+.|++||..||.|.++++..+...+|+
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~---~V~VvTpt~~LA~qdae~~~~l~~~LGL 126 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGK---GVHVVTVNDYLAQRDAEWMGQVYRFLGL 126 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCC---CEEEEcCCHHHHHHHHHHHHHHhccCCC
Confidence 365 88999999988888777 99999999999999988853333333 7999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHcC------CCCCCcceEEEeccchHHhc-cCcH---------
Q 015129 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIKMFVLDEADEMLS-RGFK--------- 200 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~------~~~~~~~~~iV~DE~h~~~~-~~~~--------- 200 (413)
++..+.|+.+....... -.++|+++||..| +++++.+ ...+..+.++|+||+|++.- ....
T Consensus 127 sv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~ 204 (745)
T TIGR00963 127 SVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAE 204 (745)
T ss_pred eEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCC
Confidence 99999998886544333 3479999999999 8888765 24567789999999997552 1000
Q ss_pred --------------------------------------HHHHHHH------------------hh------CC-------
Q 015129 201 --------------------------------------DQIYDIF------------------QL------LP------- 211 (413)
Q Consensus 201 --------------------------------------~~~~~~~------------------~~------~~------- 211 (413)
..++.++ .. +.
T Consensus 205 ~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 284 (745)
T TIGR00963 205 KSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIV 284 (745)
T ss_pred CchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 0000000 00 00
Q ss_pred ------------------------------------------------------CCceEEEEEeeCCHhHHHHHHHhcCC
Q 015129 212 ------------------------------------------------------AKVQVGVFSATMPPEALEITRKFMNK 237 (413)
Q Consensus 212 ------------------------------------------------------~~~~~i~~SaT~~~~~~~~~~~~~~~ 237 (413)
--.++.+||+|...+..+ +...++-
T Consensus 285 ~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E-~~~iY~l 363 (745)
T TIGR00963 285 RDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEE-FEKIYNL 363 (745)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHH-HHHHhCC
Confidence 004677899998765544 4444444
Q ss_pred CEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHh--hcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCH
Q 015129 238 PVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQ 315 (413)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 315 (413)
.+.......+.........+ ..+...+...+.+.+.. ..+.++||||++.+.++.+++.|.+.|+.+..+|++ +
T Consensus 364 ~vv~IPtnkp~~R~d~~d~i--~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q 439 (745)
T TIGR00963 364 EVVVVPTNRPVIRKDLSDLV--YKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--N 439 (745)
T ss_pred CEEEeCCCCCeeeeeCCCeE--EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--h
Confidence 43333222221111111122 22233466666554432 356799999999999999999999999999999998 7
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCC-------CcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcH
Q 015129 316 NTRDIIMREFRSGSSRVLITTDLLARGIDVQQ-------VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 388 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~-------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 388 (413)
.+|+..+..|..+...|+|||+++++|+|++. ..+||+++.|.|...+.|+.||+||.|.+|.+..+++..|.
T Consensus 440 ~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 440 HEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 78999999999999999999999999999998 55999999999999999999999999999999999998865
Q ss_pred HH
Q 015129 389 RM 390 (413)
Q Consensus 389 ~~ 390 (413)
-.
T Consensus 520 l~ 521 (745)
T TIGR00963 520 LM 521 (745)
T ss_pred HH
Confidence 33
No 76
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=5.4e-34 Score=264.21 Aligned_cols=325 Identities=20% Similarity=0.255 Sum_probs=249.0
Q ss_pred CCCCHHH-HHHHHHCCCCCCcHHHHhhhhhhhcC------CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCc
Q 015129 45 MGLQENL-LRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 117 (413)
Q Consensus 45 ~~l~~~~-~~~l~~~~~~~~~~~Q~~~~~~i~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~ 117 (413)
++....+ .+.+.+.+| +||..|.+++..|..+ -+-++.|+.|||||.+++++++..+..+. ++...+||
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~---Q~ALMAPT 320 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY---QAALMAPT 320 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC---eeEEeccH
Confidence 3444444 345577788 9999999999999863 35699999999999999999999888777 99999999
Q ss_pred HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchH
Q 015129 118 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 193 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~ 193 (413)
.-||.|.++.+.++....++.+..++|.......... .+...+|+|+|+.-+ .....+.++.++|+||-|+
T Consensus 321 EILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVIiDEQHR 395 (677)
T COG1200 321 EILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVIIDEQHR 395 (677)
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEEEecccc
Confidence 9999999999999999999999999988776555433 345689999996544 3556778899999999999
Q ss_pred HhccCcHHHHHHHHhhCCC-CceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHH
Q 015129 194 MLSRGFKDQIYDIFQLLPA-KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCD 272 (413)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (413)
+. -.-...+..... .+.++.|||||.|...++.. +++...-....-+.-...+.............++.+..
T Consensus 396 FG-----V~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~--fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ 468 (677)
T COG1200 396 FG-----VHQRLALREKGEQNPHVLVMTATPIPRTLALTA--FGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIRE 468 (677)
T ss_pred cc-----HHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHH--hccccchhhccCCCCCCceEEEEeccccHHHHHHHHHH
Confidence 63 333333333334 57799999999998766533 33332222222222223455555544443444444444
Q ss_pred HHHhhcccceEEEEccHHH--------HHHHHHHhhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Q 015129 273 LYETLAITQSVIFVNTRRK--------VDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 273 ~~~~~~~~~~lif~~~~~~--------~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
-+. .+.++.+.|+-.++ +...++.|+.. +..+..+||.|+.++++++++.|++|+++|||||.+++.|
T Consensus 469 ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVG 546 (677)
T COG1200 469 EIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVG 546 (677)
T ss_pred HHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEec
Confidence 443 55689999988754 44556666643 4569999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEccC-CCChhhHHHhhhhccCCCCcceEEEEeccCc
Q 015129 343 IDVQQVSLVINYDL-PTQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 343 ~d~~~~~~vi~~~~-~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 387 (413)
+|+|+++++|+.+. ....+++=|..||+||.+..+.|+.++.+..
T Consensus 547 VdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 547 VDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred ccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999999988776 3577899999999999999999999998876
No 77
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-34 Score=250.96 Aligned_cols=328 Identities=19% Similarity=0.272 Sum_probs=241.1
Q ss_pred HHHHHHHH-CCCCC-CcHHHHhhhhhhhc-CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHH
Q 015129 50 NLLRGIYA-YGFEK-PSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEK 126 (413)
Q Consensus 50 ~~~~~l~~-~~~~~-~~~~Q~~~~~~i~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~ 126 (413)
.+..+|++ +|+.. -++.|..|+..+.+ .+++.+++|||+||+++|.+|++-. ++-.+|+.|..+|..++.+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHHH
Confidence 34556655 57655 47899999999877 5799999999999999998887652 2288999999999999999
Q ss_pred HHHHhhcccCcEEEEEEcCcchHHHHHHH------HcCCcEEEEccHHH-----HHHHHcCCCCCCcceEEEeccchHHh
Q 015129 127 VMRALGDYLGVKVHACVGGTSVREDQRIL------QAGVHVVVGTPGRV-----FDMLRRQSLRPDYIKMFVLDEADEML 195 (413)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~iii~T~~~l-----~~~~~~~~~~~~~~~~iV~DE~h~~~ 195 (413)
.+.++ ...+..+.+..+..+..+.+ .....++..||++. ..++. ....-.-+.++|+||+|..+
T Consensus 80 HL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vVDEAHCVS 154 (641)
T KOG0352|consen 80 HLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVVDEAHCVS 154 (641)
T ss_pred HHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeeeEEechhhhHh
Confidence 88876 34444455444444444432 23567999999864 22222 12222337899999999998
Q ss_pred ccC--cH---HHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHh--cCCCEEEEecCCcccccCeEEEEEEeccc---cc
Q 015129 196 SRG--FK---DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKF--MNKPVRILVKRDELTLEGIKQFYVNVEKE---EW 265 (413)
Q Consensus 196 ~~~--~~---~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 265 (413)
.++ |. ..+-.+...++ ....+.+|||..+..++.+-.- +.+|+.....+.. ..+ .++..... ..
T Consensus 155 QWGHDFRPDYL~LG~LRS~~~-~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F--R~N---LFYD~~~K~~I~D 228 (641)
T KOG0352|consen 155 QWGHDFRPDYLTLGSLRSVCP-GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF--RDN---LFYDNHMKSFITD 228 (641)
T ss_pred hhccccCcchhhhhhHHhhCC-CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch--hhh---hhHHHHHHHHhhh
Confidence 766 22 34445555554 6669999999998877754433 3445433322211 111 11111111 11
Q ss_pred hHHHHHHHHHhh-------------cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 015129 266 KLETLCDLYETL-------------AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 332 (413)
Q Consensus 266 ~~~~l~~~~~~~-------------~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
....|.++-... ..+-.||||.+++.++.++-.|...|+++..+|+++...+|.++.+.|-+++..|
T Consensus 229 ~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~Pv 308 (641)
T KOG0352|consen 229 CLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPV 308 (641)
T ss_pred HhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCE
Confidence 223333333222 1135799999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHH
Q 015129 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 394 (413)
Q Consensus 333 li~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 394 (413)
+++|..++.|+|-|++++||+++++.+++-|.|-.||+||.|...+|-++|...|.+.+.-+
T Consensus 309 I~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 309 IAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred EEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987766543
No 78
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=3.5e-34 Score=267.70 Aligned_cols=292 Identities=19% Similarity=0.230 Sum_probs=205.3
Q ss_pred CCCcHHHHhhhhhhhc----CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccC
Q 015129 61 EKPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 136 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
..||++|.+++..+.. ++..++++|||+|||.+++..+..... ++|||||+.+|+.||.+.+.+.....
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 3799999999999998 899999999999999988665554321 49999999999999988777764321
Q ss_pred cEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceE
Q 015129 137 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 216 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~ 216 (413)
..+..+.|+.. ... +..|.|+|.+++........+....+++||+||||++....+...... +.....+
T Consensus 108 ~~~g~~~~~~~-~~~------~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~----~~~~~~~ 176 (442)
T COG1061 108 DEIGIYGGGEK-ELE------PAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILEL----LSAAYPR 176 (442)
T ss_pred cccceecCcee-ccC------CCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHh----hhcccce
Confidence 12333433322 111 036999999998764211223333689999999999876654433333 3322228
Q ss_pred EEEEeeCCHhHHH---HHHHhcCCCEEEEecCCc------ccccCeEEEEE-----------------------------
Q 015129 217 GVFSATMPPEALE---ITRKFMNKPVRILVKRDE------LTLEGIKQFYV----------------------------- 258 (413)
Q Consensus 217 i~~SaT~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~----------------------------- 258 (413)
+++||||...... .+...++ +........+ ..+........
T Consensus 177 LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (442)
T COG1061 177 LGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRA 255 (442)
T ss_pred eeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhH
Confidence 9999998643211 1111221 2222221110 00110000000
Q ss_pred ------EeccccchHHHHHHHHHhh-cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCc
Q 015129 259 ------NVEKEEWKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR 331 (413)
Q Consensus 259 ------~~~~~~~~~~~l~~~~~~~-~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 331 (413)
.......+...+..++..+ .+.+++||+.+..+++.++..+...+. +..++++.+..+|..+++.|+.|.++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~ 334 (442)
T COG1061 256 ENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIK 334 (442)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCC
Confidence 0001112334444454444 466999999999999999999998887 88999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccC
Q 015129 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGR 372 (413)
Q Consensus 332 vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R 372 (413)
+|+++.++.+|+|+|+++++|..+++.|...|.||+||+.|
T Consensus 335 ~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 335 VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred EEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999
No 79
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=2.9e-34 Score=249.33 Aligned_cols=281 Identities=30% Similarity=0.480 Sum_probs=228.4
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhhccc---CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcce
Q 015129 108 QCQALVLAPTRELAQQIEKVMRALGDYL---GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIK 184 (413)
Q Consensus 108 ~~~~liv~P~~~l~~q~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~ 184 (413)
.+..+|+-|+++|++|..+.++++-... .++...+.|+.....+...+..+.+|+|+||.++.+.+..+...+..++
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 3579999999999999999777664332 3444466777777778888888999999999999999999999999999
Q ss_pred EEEeccchHHhccCcHHHHHHHHhhCCC------CceEEEEEeeCCH-hHHHHHHHhcCCCEEEEecCCcccccCeEEEE
Q 015129 185 MFVLDEADEMLSRGFKDQIYDIFQLLPA------KVQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFY 257 (413)
Q Consensus 185 ~iV~DE~h~~~~~~~~~~~~~~~~~~~~------~~~~i~~SaT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (413)
++++||++.++..+|.+.+.++...++. ..|.+..|||+.. +......+.++.|..+........++.+.++.
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 9999999999999999998888877753 5788999999863 44445566777777777766666666555554
Q ss_pred EEecccc---------------------------------chHHH-----HHHHHHhhcccceEEEEccHHHHHHHHHHh
Q 015129 258 VNVEKEE---------------------------------WKLET-----LCDLYETLAITQSVIFVNTRRKVDWLTDKM 299 (413)
Q Consensus 258 ~~~~~~~---------------------------------~~~~~-----l~~~~~~~~~~~~lif~~~~~~~~~l~~~L 299 (413)
..+.+.- ..... -...++++...++||||.++..++.+.+++
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~ 525 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMM 525 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHH
Confidence 3333210 01111 122345566779999999999999999999
Q ss_pred hhCC---CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCc
Q 015129 300 RSRD---HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK 376 (413)
Q Consensus 300 ~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~ 376 (413)
.+.| ..|..+||+..+.+|.+-++.|+.++.+.||||+++++|+|+.++..+|+..+|.....|.+|+||+||..+-
T Consensus 526 ~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraerm 605 (725)
T KOG0349|consen 526 NQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERM 605 (725)
T ss_pred HHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhc
Confidence 8875 4788999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ceEEEEeccCcH
Q 015129 377 GVAINFVTRDDE 388 (413)
Q Consensus 377 ~~~~~~~~~~~~ 388 (413)
|.++.++....+
T Consensus 606 glaislvat~~e 617 (725)
T KOG0349|consen 606 GLAISLVATVPE 617 (725)
T ss_pred ceeEEEeeccch
Confidence 988888776533
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.2e-33 Score=278.35 Aligned_cols=334 Identities=17% Similarity=0.109 Sum_probs=223.7
Q ss_pred CCcHHHHhhhhhhhc--CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEE
Q 015129 62 KPSAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
.|.|||..++..+.. ..++++..++|.|||..+.+.+...+..+. ..++|||||. .|..||..++.+.. ++..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~-~~rvLIVvP~-sL~~QW~~El~~kF---~l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR-AERVLILVPE-TLQHQWLVEMLRRF---NLRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC-CCcEEEEcCH-HHHHHHHHHHHHHh---CCCe
Confidence 599999999877765 457999999999999988766665555443 3489999996 88999999986543 3444
Q ss_pred EEEEcCcchHHHHH--HHHcCCcEEEEccHHHHHHH-HcCCCCCCcceEEEeccchHHhccC--cHHHHHHHHhhCCCCc
Q 015129 140 HACVGGTSVREDQR--ILQAGVHVVVGTPGRVFDML-RRQSLRPDYIKMFVLDEADEMLSRG--FKDQIYDIFQLLPAKV 214 (413)
Q Consensus 140 ~~~~~~~~~~~~~~--~~~~~~~iii~T~~~l~~~~-~~~~~~~~~~~~iV~DE~h~~~~~~--~~~~~~~~~~~~~~~~ 214 (413)
.++.++........ ......+++|+|++.+...- ....+....++++|+||||++.... .......+........
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~ 306 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIP 306 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccC
Confidence 44443321110000 01123689999998876411 1111223358999999999986321 1222333322223344
Q ss_pred eEEEEEeeCCH-hHHHH------------------------------------------------HHHhcCC--------
Q 015129 215 QVGVFSATMPP-EALEI------------------------------------------------TRKFMNK-------- 237 (413)
Q Consensus 215 ~~i~~SaT~~~-~~~~~------------------------------------------------~~~~~~~-------- 237 (413)
.++++||||.. ...+. +..++..
T Consensus 307 ~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~ 386 (956)
T PRK04914 307 GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQ 386 (956)
T ss_pred CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHh
Confidence 68999999962 10000 0000000
Q ss_pred ---------------------------CEEEEecCCc--ccccCeEEEE-EEe---------------------------
Q 015129 238 ---------------------------PVRILVKRDE--LTLEGIKQFY-VNV--------------------------- 260 (413)
Q Consensus 238 ---------------------------~~~~~~~~~~--~~~~~~~~~~-~~~--------------------------- 260 (413)
.+.+...... -.+....+.+ ...
T Consensus 387 ~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~ 466 (956)
T PRK04914 387 AANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQ 466 (956)
T ss_pred hhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHH
Confidence 0000000000 0000000110 000
Q ss_pred --------ccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHh-hhCCCeeEEecCCCCHHHHHHHHHHHhcC--C
Q 015129 261 --------EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM-RSRDHTVSATHGDMDQNTRDIIMREFRSG--S 329 (413)
Q Consensus 261 --------~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~ 329 (413)
.....+++.+.++++.....|+||||+++..+..+.+.| ...|+.+..+||+++..+|.++++.|+++ .
T Consensus 467 ~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~ 546 (956)
T PRK04914 467 EFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDG 546 (956)
T ss_pred HHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCC
Confidence 011235566777777777789999999999999999999 46799999999999999999999999984 5
Q ss_pred CcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhcc
Q 015129 330 SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNV 400 (413)
Q Consensus 330 ~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (413)
.+|||||+++++|+|++.+++||+||.|+++..|.||+||++|.|+.+.+.+++..........+.+.++.
T Consensus 547 ~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 547 AQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred ccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999988777776655555556555554
No 81
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=241.06 Aligned_cols=348 Identities=18% Similarity=0.260 Sum_probs=266.5
Q ss_pred CcCCchhhccCc--ccCCCCHHHHHHHH-HCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCC
Q 015129 31 FFTSYDEVYDSF--DAMGLQENLLRGIY-AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV 107 (413)
Q Consensus 31 ~~~~~~~~~~~~--~~~~l~~~~~~~l~-~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~ 107 (413)
....|+..-..| ++++.+....+.|+ .+..+.+||.|..+++....|.++++..|||.||+++|.+|++-.
T Consensus 60 ~~~eyd~spaawdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------ 133 (695)
T KOG0353|consen 60 ASNEYDRSPAAWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------ 133 (695)
T ss_pred ccccccCCccccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------
Confidence 344455544445 45677888888885 478889999999999999999999999999999999998887642
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH------HHcCCcEEEEccHHHHHHHH-----cC
Q 015129 108 QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI------LQAGVHVVVGTPGRVFDMLR-----RQ 176 (413)
Q Consensus 108 ~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~iii~T~~~l~~~~~-----~~ 176 (413)
.+.+||+||...|++++.-.++.+ |+....+......+..... .+....++..||+++...-. ++
T Consensus 134 dg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek 209 (695)
T KOG0353|consen 134 DGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK 209 (695)
T ss_pred CCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH
Confidence 238999999999999988888886 5555555544444332221 12356799999998743221 23
Q ss_pred CCCCCcceEEEeccchHHhccC--cH---HHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCccccc
Q 015129 177 SLRPDYIKMFVLDEADEMLSRG--FK---DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLE 251 (413)
Q Consensus 177 ~~~~~~~~~iV~DE~h~~~~~~--~~---~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (413)
.+....+.+|.+||+|....++ |. ..+.-+.+.+ ++..++++|||..++..+..+..+.-...+... .....+
T Consensus 210 a~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf-~~~~iigltatatn~vl~d~k~il~ie~~~tf~-a~fnr~ 287 (695)
T KOG0353|consen 210 ALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQF-KGAPIIGLTATATNHVLDDAKDILCIEAAFTFR-AGFNRP 287 (695)
T ss_pred HhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhC-CCCceeeeehhhhcchhhHHHHHHhHHhhheee-cccCCC
Confidence 3445568999999999988665 22 3333344444 466799999999988888777766543322222 234445
Q ss_pred CeEEEEEEecc-ccchHHHHHHHHHh-hcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCC
Q 015129 252 GIKQFYVNVEK-EEWKLETLCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS 329 (413)
Q Consensus 252 ~~~~~~~~~~~-~~~~~~~l~~~~~~-~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 329 (413)
++...+...+. .+..++.+..+++. ..+...||||-+++.++.+...|+..|+....+|+.+.+.++.-+-+.|..|+
T Consensus 288 nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~e 367 (695)
T KOG0353|consen 288 NLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGE 367 (695)
T ss_pred CceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccc
Confidence 55554444332 34456666776664 46668999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHH-------------------------------------------h
Q 015129 330 SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH-------------------------------------------R 366 (413)
Q Consensus 330 ~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q-------------------------------------------~ 366 (413)
+.|+|+|-.++.|+|-|++++||+-+.|.|+..|.| .
T Consensus 368 iqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfseke 447 (695)
T KOG0353|consen 368 IQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKE 447 (695)
T ss_pred eEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchh
Confidence 999999999999999999999999999999999999 6
Q ss_pred hhhccCCCCcceEEEEeccCcHHH
Q 015129 367 IGRSGRFGRKGVAINFVTRDDERM 390 (413)
Q Consensus 367 ~GR~~R~g~~~~~~~~~~~~~~~~ 390 (413)
.||+||.|.+..|+++|.-.|-..
T Consensus 448 sgragrd~~~a~cilyy~~~difk 471 (695)
T KOG0353|consen 448 SGRAGRDDMKADCILYYGFADIFK 471 (695)
T ss_pred ccccccCCCcccEEEEechHHHHh
Confidence 699999999999999988765433
No 82
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=4.7e-32 Score=265.03 Aligned_cols=332 Identities=20% Similarity=0.255 Sum_probs=257.0
Q ss_pred CCCHHHHHHH-HHCCCCCCcHHHHhhhhhhhc----C--CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcH
Q 015129 46 GLQENLLRGI-YAYGFEKPSAIQQRGIVPFCK----G--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 118 (413)
Q Consensus 46 ~l~~~~~~~l-~~~~~~~~~~~Q~~~~~~i~~----~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 118 (413)
+.+......+ ..++| .-|+-|..|++.+.+ + -|-++||..|-|||.+++-++..+...++ +|.|+|||.
T Consensus 578 ~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GK---QVAvLVPTT 653 (1139)
T COG1197 578 PPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGK---QVAVLVPTT 653 (1139)
T ss_pred CCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCC---eEEEEcccH
Confidence 4444555544 44677 569999999999876 3 36799999999999999988888877765 999999999
Q ss_pred HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHH
Q 015129 119 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 194 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~ 194 (413)
-|++|.++.|++....+++++..+..-.+..+.... .....||+|+|+. +..+...+.+++++|+||-|++
T Consensus 654 lLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr-----LL~kdv~FkdLGLlIIDEEqRF 728 (1139)
T COG1197 654 LLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR-----LLSKDVKFKDLGLLIIDEEQRF 728 (1139)
T ss_pred HhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH-----hhCCCcEEecCCeEEEechhhc
Confidence 999999999999989899999998877776655443 3457899999953 3346678888999999999996
Q ss_pred hccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHH
Q 015129 195 LSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY 274 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (413)
+-.-++-++.+..+.-++.|||||.|....+....+.+...+..++.. .-.++.++...++. ..-+++..-+
T Consensus 729 -----GVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~--R~pV~T~V~~~d~~-~ireAI~REl 800 (1139)
T COG1197 729 -----GVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED--RLPVKTFVSEYDDL-LIREAILREL 800 (1139)
T ss_pred -----CccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC--CcceEEEEecCChH-HHHHHHHHHH
Confidence 333344444455666799999999998888766665554444333332 22344444433332 1223333322
Q ss_pred HhhcccceEEEEccHHHHHHHHHHhhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEE
Q 015129 275 ETLAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 (413)
Q Consensus 275 ~~~~~~~~lif~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 352 (413)
..+|.+-..+|.++..+.+++.|++. ...+.+.||.|+..+-++++..|.+|+++|||||.+++.|+|+|+++.+|
T Consensus 801 --~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiI 878 (1139)
T COG1197 801 --LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTII 878 (1139)
T ss_pred --hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEE
Confidence 35789999999999999999999886 56789999999999999999999999999999999999999999999988
Q ss_pred EccC-CCChhhHHHhhhhccCCCCcceEEEEeccC------cHHHHHHHHH
Q 015129 353 NYDL-PTQPENYLHRIGRSGRFGRKGVAINFVTRD------DERMLFDIQK 396 (413)
Q Consensus 353 ~~~~-~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~------~~~~~~~~~~ 396 (413)
+-+. ....+++-|..||+||.++.++||.++.+. -.++++.+++
T Consensus 879 Ie~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 879 IERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred EeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 7655 357899999999999999999999999864 2345555544
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=2.5e-31 Score=260.38 Aligned_cols=315 Identities=20% Similarity=0.267 Sum_probs=218.0
Q ss_pred CCcHHHHhhhhhhhcC---CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcE
Q 015129 62 KPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK 138 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~---~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
.+++.|.++++.+.++ +++++.++||||||.+++.++...+..+ .++||++|+++|+.|+.+.+++.. +..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g---~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG---KQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 5899999999999874 7899999999999999988877766554 389999999999999999998753 567
Q ss_pred EEEEEcCcchHHHHH----HHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCc------HHHHHHHHh
Q 015129 139 VHACVGGTSVREDQR----ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF------KDQIYDIFQ 208 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~----~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~------~~~~~~~~~ 208 (413)
+..++|+.+..+... ......+|+|+|+..+. ..+.++++||+||+|....... ...+. +..
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va-~~r 289 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA-VVR 289 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHH-HHH
Confidence 888898876544322 23456799999998764 3467789999999997653321 12222 222
Q ss_pred hCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCC--cccccCeEEEEEEeccc------cchHHHHHHHHHh-h-c
Q 015129 209 LLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD--ELTLEGIKQFYVNVEKE------EWKLETLCDLYET-L-A 278 (413)
Q Consensus 209 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~-~ 278 (413)
....+.+++++||||+.+....... +....+..... ....+.+.- ...... ......+.+.+++ . .
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~--id~~~~~~~~~~~~ls~~l~~~i~~~l~~ 365 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEI--IDMRELLRGENGSFLSPPLLEAIKQRLER 365 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEE--EechhhhhhcccCCCCHHHHHHHHHHHHc
Confidence 3345788999999998765544322 22222222111 111111111 111000 0011223333322 2 3
Q ss_pred ccceEEEEccHH------------------------------------------------------------HHHHHHHH
Q 015129 279 ITQSVIFVNTRR------------------------------------------------------------KVDWLTDK 298 (413)
Q Consensus 279 ~~~~lif~~~~~------------------------------------------------------------~~~~l~~~ 298 (413)
++++|||+|.+. .++.+.+.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 457888877531 34566666
Q ss_pred hhhC--CCeeEEecCCCC--HHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCC--CC----------hhh
Q 015129 299 MRSR--DHTVSATHGDMD--QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP--TQ----------PEN 362 (413)
Q Consensus 299 L~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~--~s----------~~~ 362 (413)
|++. +.++..+|+++. ..+++++++.|.+|+.+|||+|++++.|+|+|+++.|++++.. .+ .+.
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~ 525 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQL 525 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHH
Confidence 6664 667889999886 4578999999999999999999999999999999999766543 22 367
Q ss_pred HHHhhhhccCCCCcceEEEEeccCcHHHHHHH
Q 015129 363 YLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 394 (413)
Q Consensus 363 ~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 394 (413)
+.|++||+||.+..|.+++.....+...+..+
T Consensus 526 l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 526 LTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred HHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 89999999999999999988777665555444
No 84
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=3.5e-31 Score=266.34 Aligned_cols=301 Identities=21% Similarity=0.313 Sum_probs=205.3
Q ss_pred HHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcH----HHHHHHHHHHHH-hhcccCcEEE
Q 015129 66 IQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR----ELAQQIEKVMRA-LGDYLGVKVH 140 (413)
Q Consensus 66 ~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~----~l~~q~~~~~~~-~~~~~~~~~~ 140 (413)
+-.+.++.+.+++.++++|+||||||... .-++.....+. .+.+++.-|++ +++.++++++.. ++...|+.+.
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTTql-Pq~lle~g~g~-~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vr 155 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTTQL-PKICLELGRGV-KGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR 155 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHcCCCC-CCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeec
Confidence 34456667777888899999999999863 32333322222 22555556865 566666666654 2222233221
Q ss_pred EEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchH-HhccCcHH-HHHHHHhhCCCCceEEE
Q 015129 141 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE-MLSRGFKD-QIYDIFQLLPAKVQVGV 218 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~-~~~~~~~~-~~~~~~~~~~~~~~~i~ 218 (413)
..+ .....+.|+++|++.|++.+.... .++++++||+||+|+ ..+.++.. .+..++.. .+..|+|+
T Consensus 156 ----f~~------~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKvIL 223 (1294)
T PRK11131 156 ----FND------QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKVII 223 (1294)
T ss_pred ----Ccc------ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhc-CCCceEEE
Confidence 111 113467999999999999887654 488899999999994 55665543 23333333 24679999
Q ss_pred EEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEecccc-----chHHHHHHHHH---hhcccceEEEEccHH
Q 015129 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEE-----WKLETLCDLYE---TLAITQSVIFVNTRR 290 (413)
Q Consensus 219 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~---~~~~~~~lif~~~~~ 290 (413)
||||++.+ .+.+.+.+.+. +.+.... ..+...|....... ..+..+...+. ....+.+|||+++..
T Consensus 224 mSATid~e--~fs~~F~~apv-I~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~ 297 (1294)
T PRK11131 224 TSATIDPE--RFSRHFNNAPI-IEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGER 297 (1294)
T ss_pred eeCCCCHH--HHHHHcCCCCE-EEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHH
Confidence 99999753 34444444443 3333322 22444544432211 12222322222 234578999999999
Q ss_pred HHHHHHHHhhhCCCe---eEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccC-----------
Q 015129 291 KVDWLTDKMRSRDHT---VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL----------- 356 (413)
Q Consensus 291 ~~~~l~~~L~~~~~~---~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~----------- 356 (413)
+++.+++.|+..+.. +..+||+++..+|..+++. .|..+|||||+++++|+|+|++++||++|.
T Consensus 298 EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~ 375 (1294)
T PRK11131 298 EIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK 375 (1294)
T ss_pred HHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccC
Confidence 999999999987654 6789999999999999885 578899999999999999999999999863
Q ss_pred -------CCChhhHHHhhhhccCCCCcceEEEEeccCcHH
Q 015129 357 -------PTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 389 (413)
Q Consensus 357 -------~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 389 (413)
|.|.+.|.||.||+||. .+|.|+.++++.+..
T Consensus 376 ~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 376 VQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred cccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 24568999999999999 689999999987644
No 85
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=1.3e-30 Score=257.06 Aligned_cols=311 Identities=17% Similarity=0.164 Sum_probs=203.4
Q ss_pred CCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhccc--Cc
Q 015129 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL--GV 137 (413)
Q Consensus 60 ~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~--~~ 137 (413)
..+|+|+|..+......+..+++.+|||+|||.+++.++...+..+. ..+++|..||++.++++++++.++.... ..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~-~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL-ADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-CCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44899999988655445677899999999999999887765444333 3499999999999999999998754322 34
Q ss_pred EEEEEEcCcchHHHH---------------------HHHH------cCCcEEEEccHHHHHHHHcC-CCCCCc----ceE
Q 015129 138 KVHACVGGTSVREDQ---------------------RILQ------AGVHVVVGTPGRVFDMLRRQ-SLRPDY----IKM 185 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~---------------------~~~~------~~~~iii~T~~~l~~~~~~~-~~~~~~----~~~ 185 (413)
.+...+|........ ..+. --.+|+|||.++++...... ...+.. -++
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~sv 442 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSV 442 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCe
Confidence 566666654321100 1111 12689999999987444321 111111 258
Q ss_pred EEeccchHHhccCcHHHHHHHHhhC-CCCceEEEEEeeCCHhHHHHHHHhcCCC--EE------EE--ecC---Cccccc
Q 015129 186 FVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVFSATMPPEALEITRKFMNKP--VR------IL--VKR---DELTLE 251 (413)
Q Consensus 186 iV~DE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~~~~~~~~~~~--~~------~~--~~~---~~~~~~ 251 (413)
|||||+|.+.. .....+..+++.+ .....+|+||||++....+.+..-+... .. .. ... ......
T Consensus 443 vIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~ 521 (878)
T PRK09694 443 LIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLS 521 (878)
T ss_pred EEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecc
Confidence 99999998633 2334455555443 2356799999999987765444322211 00 00 000 000000
Q ss_pred ------CeEEEEE--Ee--ccccchHHHHHHHHHh-hcccceEEEEccHHHHHHHHHHhhhCC---CeeEEecCCCCHHH
Q 015129 252 ------GIKQFYV--NV--EKEEWKLETLCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSRD---HTVSATHGDMDQNT 317 (413)
Q Consensus 252 ------~~~~~~~--~~--~~~~~~~~~l~~~~~~-~~~~~~lif~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~ 317 (413)
.....+. .. .........+..+++. ..+++++||||+++.++.+++.|++.+ ..+..+||.++..+
T Consensus 522 ~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~d 601 (878)
T PRK09694 522 AHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLND 601 (878)
T ss_pred ccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Confidence 0111111 11 1001112333344433 345789999999999999999999764 57999999999999
Q ss_pred HH----HHHHHH-hcCC---CcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCC
Q 015129 318 RD----IIMREF-RSGS---SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 375 (413)
Q Consensus 318 r~----~~~~~f-~~~~---~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~ 375 (413)
|. ++++.| ++|+ ..|||+|++++.|+|+ +++++|....| .+.++||+||++|.+.
T Consensus 602 R~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 602 RREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 84 566777 5565 4799999999999999 57988887666 6899999999999875
No 86
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=3.3e-31 Score=225.12 Aligned_cols=200 Identities=54% Similarity=0.808 Sum_probs=180.6
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC--CCceeEEEEcCcHH
Q 015129 42 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG--LVQCQALVLAPTRE 119 (413)
Q Consensus 42 ~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~liv~P~~~ 119 (413)
|.++++++.+.+.+...|+..|+++|.++++.+.+|+++++++|||+|||+++++++++.+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 6788999999999999999999999999999999999999999999999999999999888776 45679999999999
Q ss_pred HHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCc
Q 015129 120 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF 199 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~ 199 (413)
|+.|+...++.+....+..+..++|+............+++|+|+||+.+...+......+.+++++|+||+|.+.+..+
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 99999999999987778888999998887666666666889999999999999988777888899999999999988888
Q ss_pred HHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEE
Q 015129 200 KDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRI 241 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~ 241 (413)
...+..+...++...+++++|||+++........++.+++.+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 899999999998899999999999999888888888877653
No 87
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.4e-31 Score=249.99 Aligned_cols=312 Identities=19% Similarity=0.248 Sum_probs=232.5
Q ss_pred HCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccC
Q 015129 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 136 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
.++| +|-.+|++|+-++.+|.++++.|+|.+|||+++-.++.-.-.. ..+++|..|-++|-+|.++.|++-....
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h---~TR~iYTSPIKALSNQKfRDFk~tF~Dv- 367 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH---MTRTIYTSPIKALSNQKFRDFKETFGDV- 367 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh---ccceEecchhhhhccchHHHHHHhcccc-
Confidence 3456 7899999999999999999999999999999998777554333 3399999999999999999998855433
Q ss_pred cEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceE
Q 015129 137 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 216 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~ 216 (413)
.+++|+.... +.+.++|+|.+.|..++.++..-..++..||+||+|.+.+...+..+++++=++|.+.++
T Consensus 368 ---gLlTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~ 437 (1248)
T KOG0947|consen 368 ---GLLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNF 437 (1248)
T ss_pred ---ceeecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceE
Confidence 3777776643 457899999999999999888888889999999999999999999999999999999999
Q ss_pred EEEEeeCCHhHHHHHHHhcC-CCEEEEecCCcccccCeEEEEEEecc---------------------------------
Q 015129 217 GVFSATMPPEALEITRKFMN-KPVRILVKRDELTLEGIKQFYVNVEK--------------------------------- 262 (413)
Q Consensus 217 i~~SaT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 262 (413)
|++|||.++.. ++..+... +...+.+.....++-.+++++.....
T Consensus 438 IlLSATVPN~~-EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~ 516 (1248)
T KOG0947|consen 438 ILLSATVPNTL-EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVE 516 (1248)
T ss_pred EEEeccCCChH-HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccc
Confidence 99999998653 33333221 11122222221122222222111000
Q ss_pred ---------------------c----------cc---hHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhC------
Q 015129 263 ---------------------E----------EW---KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR------ 302 (413)
Q Consensus 263 ---------------------~----------~~---~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~------ 302 (413)
. .. ....+...+.....-+++|||-+++.|+..++.|...
T Consensus 517 ~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~ 596 (1248)
T KOG0947|consen 517 KSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSK 596 (1248)
T ss_pred cccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccch
Confidence 0 00 1122222223333348999999999999999888653
Q ss_pred ---------------------------------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCc
Q 015129 303 ---------------------------------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 303 ---------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
..+++++||++-+--++-+.-.|..|-++||+||.+++.|+|.|.-+
T Consensus 597 EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARt 676 (1248)
T KOG0947|consen 597 EKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPART 676 (1248)
T ss_pred hHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCcee
Confidence 14588999999999999999999999999999999999999998655
Q ss_pred EEEEccC---------CCChhhHHHhhhhccCCCCc--ceEEEEecc
Q 015129 350 LVINYDL---------PTQPENYLHRIGRSGRFGRK--GVAINFVTR 385 (413)
Q Consensus 350 ~vi~~~~---------~~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~ 385 (413)
+|+ .+. -..+.+|.||.|||||.|-+ |.++++...
T Consensus 677 vVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 677 VVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred EEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 554 332 23689999999999999976 555555443
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-30 Score=246.18 Aligned_cols=293 Identities=21% Similarity=0.288 Sum_probs=197.7
Q ss_pred EEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHH----HHHH
Q 015129 81 IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ----RILQ 156 (413)
Q Consensus 81 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 156 (413)
++.||||||||.+|+.++...+..+. ++||++|+++|+.|+.+.+++.. +..+..++++.+..+.. ....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~---~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGK---SVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 47899999999999877766655443 89999999999999999998753 56677888877654432 2333
Q ss_pred cCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC-----c-HHHHHHHHhhCCCCceEEEEEeeCCHhHHHH
Q 015129 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-----F-KDQIYDIFQLLPAKVQVGVFSATMPPEALEI 230 (413)
Q Consensus 157 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~-----~-~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 230 (413)
...+|+|+|+..++ ..+.++++||+||.|...... | ...+....... .+.+++++||||+.+....
T Consensus 75 g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~-~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 75 GEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK-FNCPVVLGSATPSLESYHN 146 (505)
T ss_pred CCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh-cCCCEEEEeCCCCHHHHHH
Confidence 56799999998764 246678999999999876332 1 12333333333 4778999999998765443
Q ss_pred HHHhcCCCEEEEecC--CcccccCeEEEEEEecccc---chHHHHHHHHHh-h-cccceEEEEccHHH------------
Q 015129 231 TRKFMNKPVRILVKR--DELTLEGIKQFYVNVEKEE---WKLETLCDLYET-L-AITQSVIFVNTRRK------------ 291 (413)
Q Consensus 231 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~-~-~~~~~lif~~~~~~------------ 291 (413)
... +......... .....+.+.- ....... ...+.+.+.+++ . .++++|||+|++..
T Consensus 147 ~~~--g~~~~~~l~~r~~~~~~p~v~v--id~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 147 AKQ--KAYRLLVLTRRVSGRKPPEVKL--IDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYI 222 (505)
T ss_pred Hhc--CCeEEeechhhhcCCCCCeEEE--EecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCc
Confidence 321 1111111111 1111111111 1111111 111223333322 2 34689999876533
Q ss_pred ------------------------------------------------HHHHHHHhhhC--CCeeEEecCCCCHHHH--H
Q 015129 292 ------------------------------------------------VDWLTDKMRSR--DHTVSATHGDMDQNTR--D 319 (413)
Q Consensus 292 ------------------------------------------------~~~l~~~L~~~--~~~~~~~~~~~~~~~r--~ 319 (413)
.+.+.+.|++. +..+..+|++++...+ .
T Consensus 223 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHH
Confidence 46666777665 5688899999876665 8
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCC------------ChhhHHHhhhhccCCCCcceEEEEeccCc
Q 015129 320 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------------QPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 320 ~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 387 (413)
++++.|.+|+.+|||+|++++.|+|+|+++.|+.++... ....+.|++||+||.+..|.+++.....+
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 999999999999999999999999999999987554432 24678999999999999999987766655
Q ss_pred HHHH
Q 015129 388 ERML 391 (413)
Q Consensus 388 ~~~~ 391 (413)
...+
T Consensus 383 ~~~~ 386 (505)
T TIGR00595 383 HPAI 386 (505)
T ss_pred CHHH
Confidence 5433
No 89
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=5.2e-31 Score=254.59 Aligned_cols=330 Identities=20% Similarity=0.316 Sum_probs=239.6
Q ss_pred CCCCCCcHHHHhhhhhhhcC-CcEEEeCCCCCcchHHhHHHHHHccccCCC--------ceeEEEEcCcHHHHHHHHHHH
Q 015129 58 YGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLV--------QCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--------~~~~liv~P~~~l~~q~~~~~ 128 (413)
.|..++.+.|.......+.+ .++++|||||+|||.++++.+++.+..+.. ..+++|++|.++|+++|...|
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHH
Confidence 36667999999999998774 689999999999999999999999865432 348999999999999999999
Q ss_pred HHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCC--CCCcceEEEeccchHHhccCcHHHHHHH
Q 015129 129 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL--RPDYIKMFVLDEADEMLSRGFKDQIYDI 206 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~--~~~~~~~iV~DE~h~~~~~~~~~~~~~~ 206 (413)
.+....+|+.|.-++|+....... -.+.+++|||||++.-.-++.+. ..+-++++|+||.|.+.+ +.+..++.+
T Consensus 385 SkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhD-dRGpvLESI 460 (1674)
T KOG0951|consen 385 SKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHD-DRGPVLESI 460 (1674)
T ss_pred HhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhccc-ccchHHHHH
Confidence 999999999999999986643322 13578999999998655544221 123478999999997643 334455444
Q ss_pred HhhC-------CCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEecccc--chHH-----HHHH
Q 015129 207 FQLL-------PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEE--WKLE-----TLCD 272 (413)
Q Consensus 207 ~~~~-------~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~l~~ 272 (413)
..+. ...++++++|||+|+- .+....+...+..+.....++++-.+.+-+.-+.... .+.+ ...+
T Consensus 461 VaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeK 539 (1674)
T KOG0951|consen 461 VARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEK 539 (1674)
T ss_pred HHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHH
Confidence 3332 3478999999999853 2322222233333444445556555655554443321 1222 2334
Q ss_pred HHHhhcccceEEEEccHHHHHHHHHHhhhC-------------------------------------CCeeEEecCCCCH
Q 015129 273 LYETLAITQSVIFVNTRRKVDWLTDKMRSR-------------------------------------DHTVSATHGDMDQ 315 (413)
Q Consensus 273 ~~~~~~~~~~lif~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~ 315 (413)
+++....+++|||+-+++++.+.++.++.. ..+.+.+|++|+.
T Consensus 540 Vm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R 619 (1674)
T KOG0951|consen 540 VLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNR 619 (1674)
T ss_pred HHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCc
Confidence 555556679999999998887777666521 2568899999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEE----ccC------CCChhhHHHhhhhccCCCCc--ceEEEEe
Q 015129 316 NTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDL------PTQPENYLHRIGRSGRFGRK--GVAINFV 383 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~~------~~s~~~~~Q~~GR~~R~g~~--~~~~~~~ 383 (413)
.+|..+.+.|..|+++|+++|.++++|+|+|..+++|- |++ +.++.+.+||.||+||.+-+ |.+++.-
T Consensus 620 ~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit 699 (1674)
T KOG0951|consen 620 KDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIIT 699 (1674)
T ss_pred chHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeecc
Confidence 99999999999999999999999999999997666662 332 35789999999999998654 6666665
Q ss_pred ccCcHHHHH
Q 015129 384 TRDDERMLF 392 (413)
Q Consensus 384 ~~~~~~~~~ 392 (413)
...+..+..
T Consensus 700 ~~se~qyyl 708 (1674)
T KOG0951|consen 700 DHSELQYYL 708 (1674)
T ss_pred CchHhhhhH
Confidence 555444333
No 90
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=4e-30 Score=260.74 Aligned_cols=304 Identities=19% Similarity=0.206 Sum_probs=197.3
Q ss_pred CCCcHHHHhhhhhhhc-----CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhccc
Q 015129 61 EKPSAIQQRGIVPFCK-----GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 135 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~-----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 135 (413)
..+|++|.+|+..+.+ .++++++++||||||++++..+...+.. ....++||++|+++|+.|+.+.|..+....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-KRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-CccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 3689999999988753 3678999999999999866554443333 333499999999999999999998863222
Q ss_pred CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcC-----CCCCCcceEEEeccchHHhcc-------------
Q 015129 136 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-----SLRPDYIKMFVLDEADEMLSR------------- 197 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~-----~~~~~~~~~iV~DE~h~~~~~------------- 197 (413)
+.......+... ...........|+|+|++++.+.+... ......+++||+||||+....
T Consensus 491 ~~~~~~i~~i~~--L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~ 568 (1123)
T PRK11448 491 DQTFASIYDIKG--LEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRD 568 (1123)
T ss_pred ccchhhhhchhh--hhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccch
Confidence 211111111000 011112235789999999997765321 134567899999999985310
Q ss_pred --CcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCC----ccc----cc-CeEE-----------
Q 015129 198 --GFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD----ELT----LE-GIKQ----------- 255 (413)
Q Consensus 198 --~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~-~~~~----------- 255 (413)
.+...+..++..+. ...|++||||....... ++.++....... .+. ++ .+..
T Consensus 569 ~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~----FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~ 642 (1123)
T PRK11448 569 QLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEI----FGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEK 642 (1123)
T ss_pred hhhHHHHHHHHHhhcC--ccEEEEecCCccchhHH----hCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccc
Confidence 11355667777653 45899999997544332 223221111000 000 00 0000
Q ss_pred ------------EE--EEeccc--------------cchH----HHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhC-
Q 015129 256 ------------FY--VNVEKE--------------EWKL----ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR- 302 (413)
Q Consensus 256 ------------~~--~~~~~~--------------~~~~----~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~- 302 (413)
.+ ...+.. .... +.+.+.+.....+|+||||.+.++|+.+.+.|.+.
T Consensus 643 ~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f 722 (1123)
T PRK11448 643 GEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAF 722 (1123)
T ss_pred cchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHH
Confidence 00 000000 0001 11122222223479999999999999998887653
Q ss_pred -----C---CeeEEecCCCCHHHHHHHHHHHhcCCC-cEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCC
Q 015129 303 -----D---HTVSATHGDMDQNTRDIIMREFRSGSS-RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 373 (413)
Q Consensus 303 -----~---~~~~~~~~~~~~~~r~~~~~~f~~~~~-~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (413)
+ ..+..++|+.+ ++..+++.|++++. +|+|+++++.+|+|+|.+++||++.++.|...|+||+||+.|.
T Consensus 723 ~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 723 KKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred HhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 1 24566888875 46789999999887 6899999999999999999999999999999999999999997
Q ss_pred CC
Q 015129 374 GR 375 (413)
Q Consensus 374 g~ 375 (413)
-.
T Consensus 801 ~~ 802 (1123)
T PRK11448 801 CP 802 (1123)
T ss_pred Cc
Confidence 43
No 91
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=8.9e-30 Score=257.15 Aligned_cols=304 Identities=20% Similarity=0.270 Sum_probs=208.8
Q ss_pred HhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh-hcccCcEEEEEEcCc
Q 015129 68 QRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL-GDYLGVKVHACVGGT 146 (413)
Q Consensus 68 ~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~-~~~~~~~~~~~~~~~ 146 (413)
.+.+..+.+++.++++|+||||||...-..++. ...+. .+++++.-|++.-+..++..+.+. ....|..++.-....
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle-~~~~~-~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~ 150 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLE-LGRGS-HGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFH 150 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHH-cCCCC-CceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCC
Confidence 456666777888999999999999864333332 22222 237777889998888877776553 233344443322211
Q ss_pred chHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchH-HhccCcHHH-HHHHHhhCCCCceEEEEEeeCC
Q 015129 147 SVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE-MLSRGFKDQ-IYDIFQLLPAKVQVGVFSATMP 224 (413)
Q Consensus 147 ~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~-~~~~~~~~~-~~~~~~~~~~~~~~i~~SaT~~ 224 (413)
+. ......|.++|++.|.+.+.... .++++++||+||+|+ ..+.++... +..++... +..|+|+||||++
T Consensus 151 ~~------~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATld 222 (1283)
T TIGR01967 151 DQ------VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATID 222 (1283)
T ss_pred cc------cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCcC
Confidence 11 12457899999999998887654 478899999999994 666655543 45554443 4789999999997
Q ss_pred HhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccc-----cchHHHHHHHHHh---hcccceEEEEccHHHHHHHH
Q 015129 225 PEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE-----EWKLETLCDLYET---LAITQSVIFVNTRRKVDWLT 296 (413)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~---~~~~~~lif~~~~~~~~~l~ 296 (413)
.+ .+.+.+...++ +.+..... .+...|...... ....+.+...+.. ...+.+|||+++..+++.++
T Consensus 223 ~~--~fa~~F~~apv-I~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~ 296 (1283)
T TIGR01967 223 PE--RFSRHFNNAPI-IEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAA 296 (1283)
T ss_pred HH--HHHHHhcCCCE-EEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHH
Confidence 53 34444433343 33332221 223333332211 1223333333321 24579999999999999999
Q ss_pred HHhhhCC---CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCC----------------
Q 015129 297 DKMRSRD---HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP---------------- 357 (413)
Q Consensus 297 ~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~---------------- 357 (413)
+.|...+ ..+..+||+++.++|.++++.+ +..+||+||+++++|+|+|++++||+.|.+
T Consensus 297 ~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~ 374 (1283)
T TIGR01967 297 EILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPI 374 (1283)
T ss_pred HHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCC
Confidence 9998764 4588899999999999986643 346899999999999999999999998843
Q ss_pred --CChhhHHHhhhhccCCCCcceEEEEeccCcHHH
Q 015129 358 --TQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 390 (413)
Q Consensus 358 --~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 390 (413)
.|.+++.||.||+||.| +|.||.++++.+...
T Consensus 375 ~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 375 EPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred ccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 36689999999999997 899999999876543
No 92
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=3.7e-29 Score=249.20 Aligned_cols=330 Identities=19% Similarity=0.218 Sum_probs=222.3
Q ss_pred CCcHHHHhhhhhhh----cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 62 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
++++||..++..+. .|.++|+..++|.|||+.++..+..........+++|||||. .+..+|.+++.+|+. .+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~l 245 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--VL 245 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--CC
Confidence 78999999998875 478899999999999998765544332223334489999996 567889999999875 46
Q ss_pred EEEEEEcCcchHHHHH---HHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCc
Q 015129 138 KVHACVGGTSVREDQR---ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKV 214 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~---~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
.+..++|......... ......+|+|+|++.+...... +....+++||+||||++.+.. ......+..+. ..
T Consensus 246 ~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~~--Sklskalr~L~-a~ 320 (1033)
T PLN03142 246 RAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNEN--SLLSKTMRLFS-TN 320 (1033)
T ss_pred ceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCHH--HHHHHHHHHhh-cC
Confidence 6677777654322211 1234679999999988654321 222347899999999986543 33444444554 33
Q ss_pred eEEEEEeeCCHhHHH----HHHHhcCC--------------------------------CEEEEecCCc---ccccCeEE
Q 015129 215 QVGVFSATMPPEALE----ITRKFMNK--------------------------------PVRILVKRDE---LTLEGIKQ 255 (413)
Q Consensus 215 ~~i~~SaT~~~~~~~----~~~~~~~~--------------------------------~~~~~~~~~~---~~~~~~~~ 255 (413)
..+++||||-.+... ++..+... +..+...... ..|+....
T Consensus 321 ~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~ 400 (1033)
T PLN03142 321 YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKET 400 (1033)
T ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeE
Confidence 468899998532111 11100000 0000000000 00000000
Q ss_pred EE-E------------------------------------------------------------EeccccchHHHHHHHH
Q 015129 256 FY-V------------------------------------------------------------NVEKEEWKLETLCDLY 274 (413)
Q Consensus 256 ~~-~------------------------------------------------------------~~~~~~~~~~~l~~~~ 274 (413)
.+ . .......++..+..++
T Consensus 401 iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL 480 (1033)
T PLN03142 401 ILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLL 480 (1033)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHH
Confidence 00 0 0001124555666666
Q ss_pred Hhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCC---CcEEEEcCCCCCCCCCCCCc
Q 015129 275 ETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS---SRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 275 ~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vli~t~~~~~G~d~~~~~ 349 (413)
... .+.++|||+........+.+.|...++.+..++|+++..+|..+++.|++.. .-+|++|.+.+.|+|+..++
T Consensus 481 ~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad 560 (1033)
T PLN03142 481 PKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATAD 560 (1033)
T ss_pred HHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCC
Confidence 543 4569999999999999999999999999999999999999999999998632 34788999999999999999
Q ss_pred EEEEccCCCChhhHHHhhhhccCCCCcc--eEEEEeccC--cHHHHHHHHHHhc
Q 015129 350 LVINYDLPTQPENYLHRIGRSGRFGRKG--VAINFVTRD--DERMLFDIQKFYN 399 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~~--~~~~~~~~~--~~~~~~~~~~~~~ 399 (413)
+||+++++|++....|++||++|.|+.. .++.+++.. +.+.+......+.
T Consensus 561 ~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~ 614 (1033)
T PLN03142 561 IVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLA 614 (1033)
T ss_pred EEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875 455556654 4455544444433
No 93
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=1e-28 Score=209.08 Aligned_cols=309 Identities=17% Similarity=0.189 Sum_probs=218.4
Q ss_pred CCcHHHHhhhhhhh----cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 62 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
++++.|..+-..+. +..+.+++|-||+|||......+.+.+.++. ++.+..|+...+.+++.+++.... +.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~---~vciASPRvDVclEl~~Rlk~aF~--~~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGG---RVCIASPRVDVCLELYPRLKQAFS--NC 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCC---eEEEecCcccchHHHHHHHHHhhc--cC
Confidence 68999988776655 4689999999999999988777777776665 999999999999999999988544 56
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEE
Q 015129 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVG 217 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
.+..++|+...... ..++|+|..+|++.-.. ||++|+||+|.+.-..-...-..+..........|
T Consensus 172 ~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~a-------FD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 172 DIDLLYGDSDSYFR-------APLVVATTHQLLRFKQA-------FDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CeeeEecCCchhcc-------ccEEEEehHHHHHHHhh-------ccEEEEeccccccccCCHHHHHHHHHhhcccCceE
Confidence 77888887764432 57999999888876554 89999999998754332333333444444556689
Q ss_pred EEEeeCCHhHHHHHHHhcCCCEEEEecCCcc-cccCeEEEEEEeccccchH------HHHHHHHHhh--cccceEEEEcc
Q 015129 218 VFSATMPPEALEITRKFMNKPVRILVKRDEL-TLEGIKQFYVNVEKEEWKL------ETLCDLYETL--AITQSVIFVNT 288 (413)
Q Consensus 218 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~--~~~~~lif~~~ 288 (413)
++|||++..+.......- ...+......- .+-.+..+ ........++ ..+...++.. .+.+++||+++
T Consensus 238 ylTATp~k~l~r~~~~g~--~~~~klp~RfH~~pLpvPkf-~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~ 314 (441)
T COG4098 238 YLTATPTKKLERKILKGN--LRILKLPARFHGKPLPVPKF-VWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPE 314 (441)
T ss_pred EEecCChHHHHHHhhhCC--eeEeecchhhcCCCCCCCce-EEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecc
Confidence 999999976655433222 11222211111 11111112 2222212122 2455555543 44699999999
Q ss_pred HHHHHHHHHHhhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCC--CChhhHH
Q 015129 289 RRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP--TQPENYL 364 (413)
Q Consensus 289 ~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~--~s~~~~~ 364 (413)
.+..+.+++.|+.. ...+..+|+. ...|.+..++|++|+.++||+|.++++|+.+|++++.+.-.-. .+.+.++
T Consensus 315 I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLV 392 (441)
T COG4098 315 IETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALV 392 (441)
T ss_pred hHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHH
Confidence 99999999999553 2345677775 4578999999999999999999999999999999998866443 6888999
Q ss_pred HhhhhccCCC--CcceEEEEeccCcHHHHHHH
Q 015129 365 HRIGRSGRFG--RKGVAINFVTRDDERMLFDI 394 (413)
Q Consensus 365 Q~~GR~~R~g--~~~~~~~~~~~~~~~~~~~~ 394 (413)
|..||+||.- ..|.+..|-......+.+..
T Consensus 393 QIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~ 424 (441)
T COG4098 393 QIAGRVGRSLERPTGDVLFFHYGKSKAMKQAR 424 (441)
T ss_pred HHhhhccCCCcCCCCcEEEEeccchHHHHHHH
Confidence 9999999964 34777766655555544433
No 94
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=4.8e-29 Score=241.18 Aligned_cols=318 Identities=18% Similarity=0.260 Sum_probs=230.0
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|.-.--.+.+|+ +..++||+|||+++.+|++.....+. .++|++|++.||.|.++++..+...+|+
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~---~V~VvTpn~yLA~qd~e~m~~l~~~lGL 152 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGR---GVHIVTVNDYLAKRDSQWMKPIYEFLGL 152 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCC---CEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 355 77888877766666666 99999999999999999987665543 7999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHcC-CCCC-----CcceEEEeccchHHh-ccC-----------
Q 015129 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQ-SLRP-----DYIKMFVLDEADEML-SRG----------- 198 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~-~~~~-----~~~~~iV~DE~h~~~-~~~----------- 198 (413)
++.++.|+.+........ .++|+++||..| +++++.. ...+ ..+.++|+||+|.++ +..
T Consensus 153 tv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~ 230 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAE 230 (896)
T ss_pred eEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCc
Confidence 999999988766554433 589999999999 8888765 2333 468999999999754 100
Q ss_pred -----cH-------------------------------------HHHHHHHhh---CC--CC------------------
Q 015129 199 -----FK-------------------------------------DQIYDIFQL---LP--AK------------------ 213 (413)
Q Consensus 199 -----~~-------------------------------------~~~~~~~~~---~~--~~------------------ 213 (413)
|. ..+..++.. +. .+
T Consensus 231 ~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~ 310 (896)
T PRK13104 231 DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALK 310 (896)
T ss_pred cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHH
Confidence 00 000111100 00 00
Q ss_pred ---------------------------------------------------------------------ceEEEEEeeCC
Q 015129 214 ---------------------------------------------------------------------VQVGVFSATMP 224 (413)
Q Consensus 214 ---------------------------------------------------------------------~~~i~~SaT~~ 224 (413)
.++.+||+|..
T Consensus 311 A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~ 390 (896)
T PRK13104 311 AHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTAD 390 (896)
T ss_pred HHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCCh
Confidence 34556666665
Q ss_pred HhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHh--hcccceEEEEccHHHHHHHHHHhhhC
Q 015129 225 PEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSR 302 (413)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~L~~~ 302 (413)
.+..++. ..++..+.......+.........+ ..+...+..++.+.+.. ..+.++||||+|++.++.+++.|...
T Consensus 391 te~~Ef~-~iY~l~Vv~IPtnkp~~R~d~~d~v--~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~ 467 (896)
T PRK13104 391 TEAYEFQ-QIYNLEVVVIPTNRSMIRKDEADLV--YLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKE 467 (896)
T ss_pred hHHHHHH-HHhCCCEEECCCCCCcceecCCCeE--EcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHc
Confidence 4443333 3333332222222111111111111 22234466666555532 25669999999999999999999999
Q ss_pred CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCC-----------------------------------
Q 015129 303 DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ----------------------------------- 347 (413)
Q Consensus 303 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~----------------------------------- 347 (413)
|+.+.++|+++.+.++..+.+.|++|. |+|||+++++|+|+.-
T Consensus 468 gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 545 (896)
T PRK13104 468 NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVI 545 (896)
T ss_pred CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHH
Confidence 999999999999999999999999995 9999999999999862
Q ss_pred ---CcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcH
Q 015129 348 ---VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 388 (413)
Q Consensus 348 ---~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 388 (413)
-=+||-...+.|..-=-|..||+||.|.+|.+-.|++-.|.
T Consensus 546 ~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 546 AAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 23567777788888889999999999999999888887764
No 95
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.1e-29 Score=246.48 Aligned_cols=315 Identities=20% Similarity=0.269 Sum_probs=235.8
Q ss_pred HHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhccc
Q 015129 56 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 135 (413)
Q Consensus 56 ~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 135 (413)
...|| .|-++|++++..+.+|.+++++||||+|||+++..++..++..+. +++|..|.++|.+|.++++.......
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q---rviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ---RVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC---ceEeccchhhhhhhHHHHHHHHhhhh
Confidence 34566 899999999999999999999999999999999999988887766 79999999999999999887754322
Q ss_pred CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCce
Q 015129 136 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 215 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
.-.+++.+|+.+. +.++.++|+|.+.|.+++..+......+..||+||+|.+.+...+..++.++-.+|...+
T Consensus 190 ~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~ 262 (1041)
T COG4581 190 ADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVR 262 (1041)
T ss_pred hhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCc
Confidence 2234566666553 356889999999999999988888899999999999999999999999999999999999
Q ss_pred EEEEEeeCCHhHHHHHHHhc---CCCEEEEecCCcccccCeEEEEEEe-------ccccc--------------------
Q 015129 216 VGVFSATMPPEALEITRKFM---NKPVRILVKRDELTLEGIKQFYVNV-------EKEEW-------------------- 265 (413)
Q Consensus 216 ~i~~SaT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-------------------- 265 (413)
++++|||.++.. ++..++. ..+..+.... .++..+.+++..- +....
T Consensus 263 ~v~LSATv~N~~-EF~~Wi~~~~~~~~~vv~t~--~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~ 339 (1041)
T COG4581 263 FVFLSATVPNAE-EFAEWIQRVHSQPIHVVSTE--HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKV 339 (1041)
T ss_pred EEEEeCCCCCHH-HHHHHHHhccCCCeEEEeec--CCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhc
Confidence 999999997543 3333332 2333333322 2222222222111 10000
Q ss_pred --------------------------hHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhC-----------------
Q 015129 266 --------------------------KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR----------------- 302 (413)
Q Consensus 266 --------------------------~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~----------------- 302 (413)
....+...+.....-++++|+-++..|+..+..+...
T Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~ 419 (1041)
T COG4581 340 RETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIID 419 (1041)
T ss_pred cccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHH
Confidence 0011222222334457999999999888776665421
Q ss_pred -----------C-------------CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEcc---
Q 015129 303 -----------D-------------HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD--- 355 (413)
Q Consensus 303 -----------~-------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~--- 355 (413)
+ ..++++|+++-+..+..+.+.|..|-.+|+++|.+++.|+|.|.-++|+ .+
T Consensus 420 ~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K 498 (1041)
T COG4581 420 HAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSK 498 (1041)
T ss_pred HHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEE
Confidence 1 2355899999999999999999999999999999999999998655554 22
Q ss_pred ------CCCChhhHHHhhhhccCCCCc--ceEEEEecc
Q 015129 356 ------LPTQPENYLHRIGRSGRFGRK--GVAINFVTR 385 (413)
Q Consensus 356 ------~~~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~ 385 (413)
...++.+|.|+.||+||.|.+ |.++++..+
T Consensus 499 ~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 499 FDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred ecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 235789999999999999987 666666444
No 96
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=9.9e-29 Score=238.82 Aligned_cols=318 Identities=19% Similarity=0.231 Sum_probs=236.7
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|.-+.-.+.+|+ +..+.||+|||+++.++++-....+. .+-|++|+..||.|.++++..+...+|+
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~---~V~IvTpn~yLA~rd~e~~~~l~~~LGl 151 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGK---GVHVVTVNDYLAKRDAEWMGPLYEFLGL 151 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 355 78999988776776675 99999999999999988853333333 6779999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHcCC------CCCCcceEEEeccchHHh-ccC-----------
Q 015129 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQS------LRPDYIKMFVLDEADEML-SRG----------- 198 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~~------~~~~~~~~iV~DE~h~~~-~~~----------- 198 (413)
++..+.|+.+........ .++|+++|+..| +++++... .....+.+.|+||+|.++ +..
T Consensus 152 sv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~ 229 (830)
T PRK12904 152 SVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAE 229 (830)
T ss_pred eEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCC
Confidence 999999988876655554 489999999999 88887543 234568899999999754 100
Q ss_pred ----cHHHHHHHHhhCCC--------------------------------------------------------------
Q 015129 199 ----FKDQIYDIFQLLPA-------------------------------------------------------------- 212 (413)
Q Consensus 199 ----~~~~~~~~~~~~~~-------------------------------------------------------------- 212 (413)
....+..+...+..
T Consensus 230 ~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 309 (830)
T PRK12904 230 DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIV 309 (830)
T ss_pred cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 00000111110000
Q ss_pred -------------------------------------------------------CceEEEEEeeCCHhHHHHHHHhcCC
Q 015129 213 -------------------------------------------------------KVQVGVFSATMPPEALEITRKFMNK 237 (413)
Q Consensus 213 -------------------------------------------------------~~~~i~~SaT~~~~~~~~~~~~~~~ 237 (413)
-.++.+||+|...+..+ +...++-
T Consensus 310 ~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E-~~~iY~l 388 (830)
T PRK12904 310 KDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEE-FREIYNL 388 (830)
T ss_pred ECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHH-HHHHhCC
Confidence 04677888888765544 4444444
Q ss_pred CEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHh--hcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCH
Q 015129 238 PVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQ 315 (413)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 315 (413)
.+.......+.........+ ..+...+...+...+.. ..+.++||||++++.++.+++.|...|+.+..+|+. +
T Consensus 389 ~vv~IPtnkp~~r~d~~d~i--~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q 464 (830)
T PRK12904 389 DVVVIPTNRPMIRIDHPDLI--YKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--N 464 (830)
T ss_pred CEEEcCCCCCeeeeeCCCeE--EECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--h
Confidence 43333222222111111122 22334577888877755 466799999999999999999999999999999995 7
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCC--------------------------------------CcEEEEccCC
Q 015129 316 NTRDIIMREFRSGSSRVLITTDLLARGIDVQQ--------------------------------------VSLVINYDLP 357 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~--------------------------------------~~~vi~~~~~ 357 (413)
.+|+..+..|..++..|+|||+++++|+|++- -=|||-...+
T Consensus 465 ~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerh 544 (830)
T PRK12904 465 HEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERH 544 (830)
T ss_pred HHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccC
Confidence 78999999999999999999999999999863 2367777788
Q ss_pred CChhhHHHhhhhccCCCCcceEEEEeccCcH
Q 015129 358 TQPENYLHRIGRSGRFGRKGVAINFVTRDDE 388 (413)
Q Consensus 358 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 388 (413)
.|..--.|..||+||.|.+|.+..|++-.|.
T Consensus 545 esrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 545 ESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred chHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 8999999999999999999999988888764
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.3e-28 Score=237.07 Aligned_cols=318 Identities=19% Similarity=0.230 Sum_probs=231.3
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|.-+.-.+.+|+ +..+.||+|||+++.++++.....+. .+-+++|+.-||.|-++++..+...+|+
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~---~v~vvT~neyLA~Rd~e~~~~~~~~LGl 150 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGK---GVHVVTVNEYLSSRDATEMGELYRWLGL 150 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCC---CeEEEeccHHHHHhhHHHHHHHHHhcCC
Confidence 355 88999988776776776 99999999999999888877766665 8999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHcCC------CCCCcceEEEeccchHHh-ccC-----------
Q 015129 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQS------LRPDYIKMFVLDEADEML-SRG----------- 198 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~~------~~~~~~~~iV~DE~h~~~-~~~----------- 198 (413)
++..+.++.+........ .+||+++|...| +++++... .....+.+.|+||++.++ +..
T Consensus 151 ~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~ 228 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAE 228 (796)
T ss_pred eEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCC
Confidence 999998877665554443 579999999876 34444311 112347889999999643 100
Q ss_pred ----cHHHHHHHHhh----------------------------------------C--CC--------------------
Q 015129 199 ----FKDQIYDIFQL----------------------------------------L--PA-------------------- 212 (413)
Q Consensus 199 ----~~~~~~~~~~~----------------------------------------~--~~-------------------- 212 (413)
....+..+... + ++
T Consensus 229 ~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~ 308 (796)
T PRK12906 229 KATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRAN 308 (796)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHH
Confidence 00000000000 0 00
Q ss_pred ------------------------------------------------------------------CceEEEEEeeCCHh
Q 015129 213 ------------------------------------------------------------------KVQVGVFSATMPPE 226 (413)
Q Consensus 213 ------------------------------------------------------------------~~~~i~~SaT~~~~ 226 (413)
-.++.+||+|...+
T Consensus 309 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e 388 (796)
T PRK12906 309 YIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTE 388 (796)
T ss_pred HHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHH
Confidence 04566788887655
Q ss_pred HHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCCC
Q 015129 227 ALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDH 304 (413)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~ 304 (413)
..++ ...++-.+.......+......... ...+...+...+.+.+... .+.++||||++++.++.+++.|.+.|+
T Consensus 389 ~~Ef-~~iY~l~vv~IPtnkp~~r~d~~d~--i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi 465 (796)
T PRK12906 389 EEEF-REIYNMEVITIPTNRPVIRKDSPDL--LYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGI 465 (796)
T ss_pred HHHH-HHHhCCCEEEcCCCCCeeeeeCCCe--EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 4333 3344433333222111111111111 1223345777777777543 667999999999999999999999999
Q ss_pred eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCC---CCc-----EEEEccCCCChhhHHHhhhhccCCCCc
Q 015129 305 TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ---QVS-----LVINYDLPTQPENYLHRIGRSGRFGRK 376 (413)
Q Consensus 305 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~ 376 (413)
.+..+|+++...++..+.+.++.|. |+|||+++++|.|++ ++. |||.++.|.|...+.|+.||+||.|.+
T Consensus 466 ~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~ 543 (796)
T PRK12906 466 PHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDP 543 (796)
T ss_pred CeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCC
Confidence 9999999998777777777777666 999999999999995 788 999999999999999999999999999
Q ss_pred ceEEEEeccCcH
Q 015129 377 GVAINFVTRDDE 388 (413)
Q Consensus 377 ~~~~~~~~~~~~ 388 (413)
|.+..+++..|.
T Consensus 544 G~s~~~~sleD~ 555 (796)
T PRK12906 544 GSSRFYLSLEDD 555 (796)
T ss_pred cceEEEEeccch
Confidence 999999988764
No 98
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2e-29 Score=232.66 Aligned_cols=308 Identities=17% Similarity=0.249 Sum_probs=235.7
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEE
Q 015129 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.+-|+|..++.-+-++.++++.|.|.+|||.++-.++...+.... +++|..|-++|.+|.++++..-.. .|+.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ---RVIYTSPIKALSNQKYREl~~EF~----DVGL 201 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ---RVIYTSPIKALSNQKYRELLEEFK----DVGL 201 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC---eEEeeChhhhhcchhHHHHHHHhc----ccce
Confidence 688999999999999999999999999999999999998887766 999999999999999998876443 3455
Q ss_pred EEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEe
Q 015129 142 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 221 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 221 (413)
.+|+-+. ++.+..+|+|.+-|...+.++..-...+..||+||+|.+.+...+-.|++-+=.+|.+.+.+++||
T Consensus 202 MTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 202 MTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSA 274 (1041)
T ss_pred eecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEec
Confidence 5565553 345789999999999999887777777899999999999998888888888888999999999999
Q ss_pred eCCHhHHHHHHHhcC---CCEEEEecCCcccccCeEEEEEEec---------cc-cc-----------------------
Q 015129 222 TMPPEALEITRKFMN---KPVRILVKRDELTLEGIKQFYVNVE---------KE-EW----------------------- 265 (413)
Q Consensus 222 T~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~----------------------- 265 (413)
|.++. .++..+.+. .|.++.. ..+++..+.|+.++.. .. ..
T Consensus 275 TiPNA-~qFAeWI~~ihkQPcHVVY--TdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~ 351 (1041)
T KOG0948|consen 275 TIPNA-RQFAEWICHIHKQPCHVVY--TDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKK 351 (1041)
T ss_pred cCCCH-HHHHHHHHHHhcCCceEEe--ecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccc
Confidence 99754 355555443 3443333 3344444555543211 10 00
Q ss_pred ------------------hHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhC-------------------------
Q 015129 266 ------------------KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR------------------------- 302 (413)
Q Consensus 266 ------------------~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~------------------------- 302 (413)
.+-.+...+-.....++|||+-++++|+.++-.+...
T Consensus 352 ~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Lsee 431 (1041)
T KOG0948|consen 352 ANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEE 431 (1041)
T ss_pred cccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChh
Confidence 1111222222223457999999999999987777543
Q ss_pred --------------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEc-----c---CCCCh
Q 015129 303 --------------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY-----D---LPTQP 360 (413)
Q Consensus 303 --------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~-----~---~~~s~ 360 (413)
..++.++|+++-+--++-+.=.|+.|-+++|+||.+++.|+|.|.-++|+-- | ...|.
T Consensus 432 Dr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwiss 511 (1041)
T KOG0948|consen 432 DRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISS 511 (1041)
T ss_pred hccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecc
Confidence 1457889999999999999999999999999999999999999976666521 1 12367
Q ss_pred hhHHHhhhhccCCCCc--ceEEEEeccC
Q 015129 361 ENYLHRIGRSGRFGRK--GVAINFVTRD 386 (413)
Q Consensus 361 ~~~~Q~~GR~~R~g~~--~~~~~~~~~~ 386 (413)
.+|+||.||+||.|.+ |.|++++++.
T Consensus 512 GEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 512 GEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceEEecccccccCCCCCceEEEEecCc
Confidence 8999999999999976 6677766664
No 99
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.1e-27 Score=229.47 Aligned_cols=148 Identities=23% Similarity=0.322 Sum_probs=127.0
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---cHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEE
Q 015129 43 DAMGLQENLLRGIY-----AYGFEKP---SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL 114 (413)
Q Consensus 43 ~~~~l~~~~~~~l~-----~~~~~~~---~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv 114 (413)
+.+.+...+.+.+. ..|+..| +|+|.++++.+..+++++..++||+|||+++++|++..+..+. .++|+
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~IV 141 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHLV 141 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEEE
Confidence 45577777777665 5688888 9999999999999999999999999999999999997765443 58999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHcCCCCCC-------cceEE
Q 015129 115 APTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQSLRPD-------YIKMF 186 (413)
Q Consensus 115 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~~~~~~-------~~~~i 186 (413)
+|++.||.|.++++..+....++++..+.|+.+...+.... .++|+|+||..| +++++.+.+..+ .+.++
T Consensus 142 TpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~ 219 (970)
T PRK12899 142 TVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFA 219 (970)
T ss_pred eCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEE
Confidence 99999999999999999998999999999998877765544 589999999999 999988766655 35799
Q ss_pred EeccchHHh
Q 015129 187 VLDEADEML 195 (413)
Q Consensus 187 V~DE~h~~~ 195 (413)
|+||||.++
T Consensus 220 IIDEADsmL 228 (970)
T PRK12899 220 IIDEVDSIL 228 (970)
T ss_pred EEechhhhh
Confidence 999999755
No 100
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.96 E-value=7.5e-27 Score=216.47 Aligned_cols=328 Identities=19% Similarity=0.198 Sum_probs=228.6
Q ss_pred CCcHHHHhhhhhhhc----CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 62 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.++++|.+.++.+.+ |-++|+...+|.|||+..+..+..........+..||+||...|. .|.+++.+|++ ++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~-NW~~Ef~rf~P--~l 243 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLD-NWMNEFKRFTP--SL 243 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHH-HHHHHHHHhCC--Cc
Confidence 799999999988765 778999999999999886544443333233344899999987764 57888999987 68
Q ss_pred EEEEEEcCcchHHHHH---HHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCc
Q 015129 138 KVHACVGGTSVREDQR---ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKV 214 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~---~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
++..++|+........ ......+|+|||++...+-- ..+.--+++++||||+|++.+.. ..+.+++..+.. .
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f~~-~ 318 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNEK--SKLSKILREFKT-D 318 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcchh--hHHHHHHHHhcc-c
Confidence 8899998876443322 12347899999999875431 11222336899999999997665 344456666543 3
Q ss_pred eEEEEEeeCCHhHHHH----------------------------------------------------------------
Q 015129 215 QVGVFSATMPPEALEI---------------------------------------------------------------- 230 (413)
Q Consensus 215 ~~i~~SaT~~~~~~~~---------------------------------------------------------------- 230 (413)
..+++|+||-.+....
T Consensus 319 nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~ 398 (971)
T KOG0385|consen 319 NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKEL 398 (971)
T ss_pred ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCccee
Confidence 3677889985221111
Q ss_pred ------------------------------------------HHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHH
Q 015129 231 ------------------------------------------TRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLE 268 (413)
Q Consensus 231 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (413)
++..+.+|..+...........- ..+-....++.
T Consensus 399 ~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttd----ehLv~nSGKm~ 474 (971)
T KOG0385|consen 399 IIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTD----EHLVTNSGKML 474 (971)
T ss_pred eEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcc----hHHHhcCccee
Confidence 01111111111110000000000 00011234666
Q ss_pred HHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCC---CcEEEEcCCCCCCC
Q 015129 269 TLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS---SRVLITTDLLARGI 343 (413)
Q Consensus 269 ~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vli~t~~~~~G~ 343 (413)
.|..++... .+.+||||.......+-+-+++.-++..++.+.|.++.++|...++.|+... .-.|++|.+.+.||
T Consensus 475 vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGI 554 (971)
T KOG0385|consen 475 VLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGI 554 (971)
T ss_pred hHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccc
Confidence 677776543 5679999999999999999999999999999999999999999999999754 33678999999999
Q ss_pred CCCCCcEEEEccCCCChhhHHHhhhhccCCCCcc--eEEEEeccC--cHHHHHHHHHHhccc
Q 015129 344 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG--VAINFVTRD--DERMLFDIQKFYNVV 401 (413)
Q Consensus 344 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~--~~~~~~~~~--~~~~~~~~~~~~~~~ 401 (413)
|+..+++||+||..|++..=.|++.|++|.|+.. .++.+++.. +++.++.-...++..
T Consensus 555 NL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld 616 (971)
T KOG0385|consen 555 NLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLD 616 (971)
T ss_pred ccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchh
Confidence 9999999999999999999999999999999874 566677765 445555554444433
No 101
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.4e-26 Score=223.58 Aligned_cols=318 Identities=18% Similarity=0.242 Sum_probs=228.3
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|.-.--.+.+|+ +..++||.|||+++.++++.....+. .+.||+|+..||.+-.+++..+...+|+
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~---~VhIvT~ndyLA~RD~e~m~~l~~~lGl 152 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGK---GVHVITVNDYLARRDAENNRPLFEFLGL 152 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 355 77888887666666666 99999999999999998876655554 6999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHcC-CCCC-----CcceEEEeccchHHhccC------------
Q 015129 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQ-SLRP-----DYIKMFVLDEADEMLSRG------------ 198 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~-~~~~-----~~~~~iV~DE~h~~~~~~------------ 198 (413)
++.++.++.+..... ..-.++|+++|+..| +++++.+ .... ..+.+.|+||+|.++-..
T Consensus 153 sv~~i~~~~~~~~r~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~ 230 (908)
T PRK13107 153 TVGINVAGLGQQEKK--AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAE 230 (908)
T ss_pred eEEEecCCCCHHHHH--hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCc
Confidence 999998887753332 222689999999999 8888765 2222 557899999999755210
Q ss_pred -----cH---HHHHHHHh------------------------------------hC---C-----CC-------------
Q 015129 199 -----FK---DQIYDIFQ------------------------------------LL---P-----AK------------- 213 (413)
Q Consensus 199 -----~~---~~~~~~~~------------------------------------~~---~-----~~------------- 213 (413)
|. ..+..+.. .+ + .+
T Consensus 231 ~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i 310 (908)
T PRK13107 231 DSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHV 310 (908)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHH
Confidence 00 00000100 00 0 00
Q ss_pred --------------------------------------------------------------------------ceEEEE
Q 015129 214 --------------------------------------------------------------------------VQVGVF 219 (413)
Q Consensus 214 --------------------------------------------------------------------------~~~i~~ 219 (413)
.++.+|
T Consensus 311 ~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GM 390 (908)
T PRK13107 311 NAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGM 390 (908)
T ss_pred HHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcc
Confidence 345566
Q ss_pred EeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHh--hcccceEEEEccHHHHHHHHH
Q 015129 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTD 297 (413)
Q Consensus 220 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~ 297 (413)
|+|...+..++. ..++..+.......+.........++ .+...+..++.+-+.. ..+.++||||.+.+.++.+++
T Consensus 391 TGTa~te~~Ef~-~iY~l~Vv~IPTnkp~~R~d~~d~iy--~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~ 467 (908)
T PRK13107 391 TGTADTEAFEFQ-HIYGLDTVVVPTNRPMVRKDMADLVY--LTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLAR 467 (908)
T ss_pred cCCChHHHHHHH-HHhCCCEEECCCCCCccceeCCCcEE--eCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHH
Confidence 666655443333 33333332222222111111221222 2223455555554442 256699999999999999999
Q ss_pred HhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCC------------------------------
Q 015129 298 KMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ------------------------------ 347 (413)
Q Consensus 298 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~------------------------------ 347 (413)
.|...|+.+..+|++.+..++..+.+.|+.|. |+|||+++++|.|+.-
T Consensus 468 ~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (908)
T PRK13107 468 LMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRH 545 (908)
T ss_pred HHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999998 9999999999999862
Q ss_pred -------CcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcH
Q 015129 348 -------VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 388 (413)
Q Consensus 348 -------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 388 (413)
-=|||-...+.|..-=.|..||+||.|.+|.+..|++-.|.
T Consensus 546 ~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 546 DEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 23677778888888889999999999999999988888765
No 102
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=3.5e-27 Score=194.48 Aligned_cols=164 Identities=26% Similarity=0.461 Sum_probs=141.1
Q ss_pred cHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEE
Q 015129 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACV 143 (413)
Q Consensus 64 ~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 143 (413)
||+|.++++.+.+|+++++.+|||+|||++++.+++..+... ...+++|++|+++|+.|..+.+..+....+.++..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999888776 4459999999999999999999999887778888888
Q ss_pred cCcchH-HHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCC--CceEEEEE
Q 015129 144 GGTSVR-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA--KVQVGVFS 220 (413)
Q Consensus 144 ~~~~~~-~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~~S 220 (413)
++.... ........+++|+|+||++|.+.+..+.....++++||+||+|.+....+...+..+...+.. +.+++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 888755 444445567999999999999999876556777999999999999988878888888877633 58999999
Q ss_pred eeCCHhHH
Q 015129 221 ATMPPEAL 228 (413)
Q Consensus 221 aT~~~~~~ 228 (413)
||++.+.+
T Consensus 160 AT~~~~~~ 167 (169)
T PF00270_consen 160 ATLPSNVE 167 (169)
T ss_dssp SSSTHHHH
T ss_pred eCCChhHh
Confidence 99985544
No 103
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=2.7e-27 Score=224.99 Aligned_cols=338 Identities=18% Similarity=0.225 Sum_probs=234.9
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhh--hhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHH
Q 015129 45 MGLQENLLRGIYAYGFEKPSAIQQRGI--VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 122 (413)
Q Consensus 45 ~~l~~~~~~~l~~~~~~~~~~~Q~~~~--~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 122 (413)
.+++....-.....|...++.+|.+.+ +.++++++.+..+||+.|||+++-+.++.......+ .++.+.|....+.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr--~~llilp~vsiv~ 283 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR--NVLLILPYVSIVQ 283 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh--ceeEecceeehhH
Confidence 344444444455668889999998765 457789999999999999999998877776654432 8999999999999
Q ss_pred HHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHc--CCCCCCcceEEEeccchHHhccCcH
Q 015129 123 QIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR--QSLRPDYIKMFVLDEADEMLSRGFK 200 (413)
Q Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~--~~~~~~~~~~iV~DE~h~~~~~~~~ 200 (413)
+....+..+....|+.+....|........ +.-.+.|||.|+-..+... .......+++||+||.|.+.+.+.+
T Consensus 284 Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg 359 (1008)
T KOG0950|consen 284 EKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRG 359 (1008)
T ss_pred HHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccc
Confidence 988889998888899988877655533322 2357999999975433321 1223455799999999999988877
Q ss_pred HHHHHHHhhC-----CCCceEEEEEeeCCHhHHHHHHHhcCCCEEEE-ecCCcccccCe--EEEEEEeccccchH-----
Q 015129 201 DQIYDIFQLL-----PAKVQVGVFSATMPPEALEITRKFMNKPVRIL-VKRDELTLEGI--KQFYVNVEKEEWKL----- 267 (413)
Q Consensus 201 ~~~~~~~~~~-----~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~----- 267 (413)
..++.++..+ ....|+|+||||+++. ..+..++...+... ..+.+.. +.+ ...++... .....
T Consensus 360 ~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~-E~ik~G~~i~~~~-r~~~lr~ia~ 435 (1008)
T KOG0950|consen 360 AILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLK-EYIKPGSLIYESS-RNKVLREIAN 435 (1008)
T ss_pred hHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccch-hccCCCcccccch-hhHHHHHhhh
Confidence 7777665443 3356899999999753 33334443221111 1111000 000 00111110 00011
Q ss_pred -----------HHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhC--------------------------------
Q 015129 268 -----------ETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSR-------------------------------- 302 (413)
Q Consensus 268 -----------~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~-------------------------------- 302 (413)
+.+..+.... .+.++||||+++..++.++..+...
T Consensus 436 l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~ 515 (1008)
T KOG0950|consen 436 LYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDP 515 (1008)
T ss_pred hhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccch
Confidence 1222222211 2235999999998888776444221
Q ss_pred ------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEc----cCCCChhhHHHhhhhccC
Q 015129 303 ------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY----DLPTQPENYLHRIGRSGR 372 (413)
Q Consensus 303 ------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~----~~~~s~~~~~Q~~GR~~R 372 (413)
...++++|++++.++|+.+...|++|.+.|++||+++..|+|+|..++++-. ....+..+|.||+||+||
T Consensus 516 Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR 595 (1008)
T KOG0950|consen 516 VLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGR 595 (1008)
T ss_pred HHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhh
Confidence 2458899999999999999999999999999999999999999988877743 234578899999999999
Q ss_pred CCCc--ceEEEEeccCcHHHHH
Q 015129 373 FGRK--GVAINFVTRDDERMLF 392 (413)
Q Consensus 373 ~g~~--~~~~~~~~~~~~~~~~ 392 (413)
.|-+ |.++++....+.+...
T Consensus 596 ~gidT~GdsiLI~k~~e~~~~~ 617 (1008)
T KOG0950|consen 596 TGIDTLGDSILIIKSSEKKRVR 617 (1008)
T ss_pred cccccCcceEEEeeccchhHHH
Confidence 9865 8899998888876655
No 104
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=7.6e-26 Score=220.21 Aligned_cols=310 Identities=17% Similarity=0.267 Sum_probs=223.2
Q ss_pred cHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHH-hhcccCcEEEEE
Q 015129 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHAC 142 (413)
Q Consensus 64 ~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~-~~~~~~~~~~~~ 142 (413)
+....+.+..+.+++-++|+||||||||...-..+++.-. ..++++.+.-|++.-|...++++.+ +....|-.|+..
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~ 129 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS 129 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE
Confidence 4445667778888999999999999999886555555433 2334899999999878887777755 333344444433
Q ss_pred EcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHh-ccCc-HHHHHHHHhhCCCCceEEEEE
Q 015129 143 VGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-SRGF-KDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~-~~~~-~~~~~~~~~~~~~~~~~i~~S 220 (413)
.-..+. ......|-++|.+.|.+.+..... ++.+++||+||+|+=. +-++ -..+..+....+...++|.||
T Consensus 130 iRfe~~------~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimS 202 (845)
T COG1643 130 IRFESK------VSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMS 202 (845)
T ss_pred EEeecc------CCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 322111 123467999999999998886554 7889999999999722 1111 234455566677678999999
Q ss_pred eeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccc-hHHHHHHHHH---hhcccceEEEEccHHHHHHHH
Q 015129 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEW-KLETLCDLYE---TLAITQSVIFVNTRRKVDWLT 296 (413)
Q Consensus 221 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~---~~~~~~~lif~~~~~~~~~l~ 296 (413)
||+.. +.+..++++...+.+....+ .+...|......+. ..+.+...+. ....+.+|||.+...+.+..+
T Consensus 203 ATld~---~rfs~~f~~apvi~i~GR~f---PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~ 276 (845)
T COG1643 203 ATLDA---ERFSAYFGNAPVIEIEGRTY---PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTA 276 (845)
T ss_pred cccCH---HHHHHHcCCCCEEEecCCcc---ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHH
Confidence 99986 34555666544444433322 23334433332333 3444444443 335679999999999999999
Q ss_pred HHhhh----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccC----------------
Q 015129 297 DKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL---------------- 356 (413)
Q Consensus 297 ~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~---------------- 356 (413)
+.|.. ....+..+||.++.+++.++++--..|+-+|+++|+++++++.++++..||.-+.
T Consensus 277 ~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~ 356 (845)
T COG1643 277 EWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLE 356 (845)
T ss_pred HHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeee
Confidence 99987 3478899999999999999888777777779999999999999999999997654
Q ss_pred --CCChhhHHHhhhhccCCCCcceEEEEeccCcHH
Q 015129 357 --PTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 389 (413)
Q Consensus 357 --~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 389 (413)
|.|-+...||.||+||-+ +|.||-+|++.+..
T Consensus 357 ~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 357 TEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred EEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 347788999999999985 69999999985443
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=9.2e-26 Score=223.45 Aligned_cols=321 Identities=18% Similarity=0.213 Sum_probs=210.8
Q ss_pred CCcHHHHhhhhhhhc---CC-cEEEeCCCCCcchHHhHHHHHHcccc-CCCceeEEEEcCcHHHHHHHHHHHHHhhcccC
Q 015129 62 KPSAIQQRGIVPFCK---GL-DVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRALGDYLG 136 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~---~~-~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
..++.|..++..+.+ .. .+++.||||+|||.+.+.++...... .....+++++.|++++.+++++.+..+....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 458899999998876 34 78999999999999999888887776 34556999999999999999999998765443
Q ss_pred cEEEEEEcCcchHHHHHH--------------HHcCCcEEEEccHHHHHHHH-cCCCC-C--CcceEEEeccchHHhccC
Q 015129 137 VKVHACVGGTSVREDQRI--------------LQAGVHVVVGTPGRVFDMLR-RQSLR-P--DYIKMFVLDEADEMLSRG 198 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~--------------~~~~~~iii~T~~~l~~~~~-~~~~~-~--~~~~~iV~DE~h~~~~~~ 198 (413)
......++.......... ...-..+.++|+........ -..+. + -..+.+|+||+|.+.+..
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 333212333222111100 00012334444444333111 11111 0 113689999999887663
Q ss_pred cHHHHHHHHhhC-CCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcc---cccCeEEEEEEeccccch-HHHHHHH
Q 015129 199 FKDQIYDIFQLL-PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL---TLEGIKQFYVNVEKEEWK-LETLCDL 273 (413)
Q Consensus 199 ~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~l~~~ 273 (413)
....+..+.... ..+..+++||||+|+.....+...+.....+....... ....+..... ....... .......
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~ 433 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKER-VDVEDGPQEELIELI 433 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccc-hhhhhhhhHhhhhcc
Confidence 333333333332 23677999999999988888887776654444321100 0011110000 0000000 0111112
Q ss_pred HH-hhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHh----cCCCcEEEEcCCCCCCCCCCCC
Q 015129 274 YE-TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR----SGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 274 ~~-~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~vli~t~~~~~G~d~~~~ 348 (413)
.. -..+++++|.||++..|..+++.|+..+..+..+||.++..+|.+.++.+. .+...|+|+|++++.|+|+. .
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-f 512 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-F 512 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-c
Confidence 22 235579999999999999999999998878999999999999988887554 56888999999999999984 6
Q ss_pred cEEEEccCCCChhhHHHhhhhccCCC--CcceEEEEeccC
Q 015129 349 SLVINYDLPTQPENYLHRIGRSGRFG--RKGVAINFVTRD 386 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~ 386 (413)
+++|- -+..+...+||+||++|.| ..|.++++....
T Consensus 513 d~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 513 DVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred Ceeee--cCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 66663 3455889999999999999 457777766655
No 106
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.94 E-value=7.7e-25 Score=214.70 Aligned_cols=299 Identities=16% Similarity=0.180 Sum_probs=181.7
Q ss_pred CCcHHHHhhhhhhhc----------CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 62 KPSAIQQRGIVPFCK----------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~----------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
-++++|..|+..+.+ .++.+++++||||||++++..+...+ .....+++||++|+.+|..|+.+.|..+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 389999999988642 25799999999999999776665444 3344569999999999999999999987
Q ss_pred hcccCcEEEEEEcCcchHHHHHHH-HcCCcEEEEccHHHHHHHHcC--CCCCCcc-eEEEeccchHHhccCcHHHHHHHH
Q 015129 132 GDYLGVKVHACVGGTSVREDQRIL-QAGVHVVVGTPGRVFDMLRRQ--SLRPDYI-KMFVLDEADEMLSRGFKDQIYDIF 207 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~~~~~--~~~~~~~-~~iV~DE~h~~~~~~~~~~~~~~~ 207 (413)
.... . .+..+.......+ .....|+|+|.++|...+... ....... .+||+||||+.....+. ..+.
T Consensus 317 ~~~~-~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~---~~l~ 387 (667)
T TIGR00348 317 QKDC-A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELA---KNLK 387 (667)
T ss_pred CCCC-C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHH---HHHH
Confidence 5321 0 1111222222222 234689999999997644321 1111111 38999999986433322 2232
Q ss_pred hhCCCCceEEEEEeeCCHh----HHHHHHHhcCCCEEEEecCCcccccCe-EEE-EEE------eccc------------
Q 015129 208 QLLPAKVQVGVFSATMPPE----ALEITRKFMNKPVRILVKRDELTLEGI-KQF-YVN------VEKE------------ 263 (413)
Q Consensus 208 ~~~~~~~~~i~~SaT~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~------~~~~------------ 263 (413)
..++ +..++++||||... .........+.+.....- .....++. ... |.. ....
T Consensus 388 ~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~-~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~ 465 (667)
T TIGR00348 388 KALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFI-TDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFEL 465 (667)
T ss_pred hhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeH-HHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHh
Confidence 3444 56799999999632 111111111122211110 00000000 000 000 0000
Q ss_pred --------------------------cchHHHHH-HHHHh----h--cccceEEEEccHHHHHHHHHHhhhC-----CCe
Q 015129 264 --------------------------EWKLETLC-DLYET----L--AITQSVIFVNTRRKVDWLTDKMRSR-----DHT 305 (413)
Q Consensus 264 --------------------------~~~~~~l~-~~~~~----~--~~~~~lif~~~~~~~~~l~~~L~~~-----~~~ 305 (413)
...+..+. .+++. . .+++++|||.++..|..+++.|.+. +..
T Consensus 466 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~ 545 (667)
T TIGR00348 466 LPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEAS 545 (667)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCe
Confidence 00011111 11111 1 2379999999999999999888654 234
Q ss_pred eEEecCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhH
Q 015129 306 VSATHGDMDQN---------------------TRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY 363 (413)
Q Consensus 306 ~~~~~~~~~~~---------------------~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~ 363 (413)
..++++..+.. ....++++|++ ++++|||+++++.+|+|.|.+++++...+..+. .+
T Consensus 546 ~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h-~L 624 (667)
T TIGR00348 546 AIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH-GL 624 (667)
T ss_pred eEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc-HH
Confidence 45566543322 12467888875 688999999999999999999999988776654 58
Q ss_pred HHhhhhccCC
Q 015129 364 LHRIGRSGRF 373 (413)
Q Consensus 364 ~Q~~GR~~R~ 373 (413)
+|++||+.|.
T Consensus 625 lQai~R~nR~ 634 (667)
T TIGR00348 625 LQAIARTNRI 634 (667)
T ss_pred HHHHHHhccc
Confidence 9999999994
No 107
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.94 E-value=1.6e-25 Score=210.99 Aligned_cols=295 Identities=19% Similarity=0.233 Sum_probs=194.4
Q ss_pred CCCcHHHHhhhhhhhc----C-CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhccc
Q 015129 61 EKPSAIQQRGIVPFCK----G-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 135 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~----~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 135 (413)
..+|.+|..|+..+.+ | +.+++++.||+|||.+++..+.. +.......++|+++.+++|+.|....+..+...
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~r-L~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~- 241 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDR-LIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF- 241 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHH-HHhcchhheeeEEechHHHHHHHHHHHHHhCCC-
Confidence 4789999999988764 4 45999999999999997655544 444444459999999999999999999887654
Q ss_pred CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcC-----CCCCCcceEEEeccchHHhccCcHHHHHHHHhhC
Q 015129 136 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-----SLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL 210 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~-----~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~ 210 (413)
+-.+..+.+... ...+.|.++|++.+....... .+....|++||+||||+-... ....++..+
T Consensus 242 ~~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~----~~~~I~dYF 309 (875)
T COG4096 242 GTKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS----EWSSILDYF 309 (875)
T ss_pred ccceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh----hhHHHHHHH
Confidence 223333322211 114789999999998877654 334455999999999985433 333566555
Q ss_pred CCCceEEEEEeeCCHhHHHHHHHhc-CCCEEEEec----------------------CCcccccCe--------------
Q 015129 211 PAKVQVGVFSATMPPEALEITRKFM-NKPVRILVK----------------------RDELTLEGI-------------- 253 (413)
Q Consensus 211 ~~~~~~i~~SaT~~~~~~~~~~~~~-~~~~~~~~~----------------------~~~~~~~~~-------------- 253 (413)
.+. .+++||||........-.++ +.|...... .....++..
T Consensus 310 dA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~d 387 (875)
T COG4096 310 DAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDED 387 (875)
T ss_pred HHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcc
Confidence 332 45559999764333333333 443322211 111111111
Q ss_pred ---------EEEEEEeccccchHHHHHHHHHhhc----ccceEEEEccHHHHHHHHHHhhhC-----CCeeEEecCCCCH
Q 015129 254 ---------KQFYVNVEKEEWKLETLCDLYETLA----ITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQ 315 (413)
Q Consensus 254 ---------~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~lif~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~ 315 (413)
................+.+.+...+ .+|+||||.+..+|+.+...|.+. +.-+..+.++..
T Consensus 388 d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~- 466 (875)
T COG4096 388 DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE- 466 (875)
T ss_pred cccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch-
Confidence 0000000011112333444444421 359999999999999999999765 345667777643
Q ss_pred HHHHHHHHHHhc-CC-CcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCC
Q 015129 316 NTRDIIMREFRS-GS-SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 373 (413)
Q Consensus 316 ~~r~~~~~~f~~-~~-~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (413)
.. ...++.|.. .+ .+|.++++++.+|+|+|.+.+++++..-.|...|.||+||+.|.
T Consensus 467 ~~-q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 467 QA-QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hh-HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 23 334444443 33 46888889999999999999999999999999999999999994
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.5e-24 Score=207.59 Aligned_cols=284 Identities=21% Similarity=0.328 Sum_probs=201.7
Q ss_pred HHHHC-CCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhh
Q 015129 54 GIYAY-GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 54 ~l~~~-~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~ 132 (413)
...+. |+ .|+..|+--...+.+|+++-+.||||.|||...++..+.....+ .++++++||..|+.|..+.+.++.
T Consensus 74 fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg---kr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 74 FFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKG---KRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred HHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcC---CeEEEEecCHHHHHHHHHHHHHHH
Confidence 44443 55 99999999999999999999999999999977655554433333 499999999999999999999998
Q ss_pred cccC-cEEEE-EEcCcchHHH----HHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC--------
Q 015129 133 DYLG-VKVHA-CVGGTSVRED----QRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-------- 198 (413)
Q Consensus 133 ~~~~-~~~~~-~~~~~~~~~~----~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~-------- 198 (413)
...+ ..+.. .|+....... .+..+...||+|+|.+-|.+.+..- ..-+|++|++|++|.++..+
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~LkaskNvDriL~ 227 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAILKASKNVDRLLR 227 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHHhccccHHHHHH
Confidence 7665 44433 4555443332 2333457899999988876665541 12358999999999876432
Q ss_pred ---cHH-----------------------HHHHHHhh--------CCCCceEEEEEeeCCHh--HHHHHHHhcCCCEEEE
Q 015129 199 ---FKD-----------------------QIYDIFQL--------LPAKVQVGVFSATMPPE--ALEITRKFMNKPVRIL 242 (413)
Q Consensus 199 ---~~~-----------------------~~~~~~~~--------~~~~~~~i~~SaT~~~~--~~~~~~~~~~~~~~~~ 242 (413)
+.. .+.+.... -....+++..|||..+. -..+++.+++-.
T Consensus 228 LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFe---- 303 (1187)
T COG1110 228 LLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFE---- 303 (1187)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCc----
Confidence 110 01111111 11346799999997653 233444554422
Q ss_pred ecCCcccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEcc---HHHHHHHHHHhhhCCCeeEEecCCCCHHHHH
Q 015129 243 VKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNT---RRKVDWLTDKMRSRDHTVSATHGDMDQNTRD 319 (413)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~---~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 319 (413)
+........|+...+... ...+.+..+++... .-.|||++. ++.++.+++.|+..|+++..+|++ ..
T Consensus 304 vG~~~~~LRNIvD~y~~~----~~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~ 373 (1187)
T COG1110 304 VGSGGEGLRNIVDIYVES----ESLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KE 373 (1187)
T ss_pred cCccchhhhheeeeeccC----ccHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----ch
Confidence 222333345666665554 35556666666654 368999999 899999999999999999999984 27
Q ss_pred HHHHHHhcCCCcEEEEcC----CCCCCCCCCC-CcEEEEccCC
Q 015129 320 IIMREFRSGSSRVLITTD----LLARGIDVQQ-VSLVINYDLP 357 (413)
Q Consensus 320 ~~~~~f~~~~~~vli~t~----~~~~G~d~~~-~~~vi~~~~~ 357 (413)
+.++.|..|++++||++. .+-+|+|+|. ++.+|++|.|
T Consensus 374 ~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 374 EALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 889999999999999875 6899999995 8889998877
No 109
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.94 E-value=4e-25 Score=203.57 Aligned_cols=308 Identities=15% Similarity=0.217 Sum_probs=217.6
Q ss_pred cHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHH-hhcccCcEEEEE
Q 015129 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHAC 142 (413)
Q Consensus 64 ~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~-~~~~~~~~~~~~ 142 (413)
+.+-.+.+..+.+++-+++.|+||||||...--.+.+.-.. ..+ ++-+.-|+|.-|...+.+... ....+|-.|+..
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~-~~g-~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA-SSG-KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc-cCC-cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 33445677788889999999999999998754444433222 222 588889999877777666543 434445554433
Q ss_pred EcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHh--ccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 143 VGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML--SRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~--~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
..-.+.. .....|.+.|.+.|++...... .++.+++||+||||+=. ..-....+++++... +..++|+||
T Consensus 131 IRFed~t------s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIimS 202 (674)
T KOG0922|consen 131 IRFEDST------SKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLIIMS 202 (674)
T ss_pred EEecccC------CCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEEEEe
Confidence 3211111 1235799999999988877654 46778999999999721 111223334444443 467899999
Q ss_pred eeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHH---HHHHHhhcccceEEEEccHHHHHHHHH
Q 015129 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETL---CDLYETLAITQSVIFVNTRRKVDWLTD 297 (413)
Q Consensus 221 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~lif~~~~~~~~~l~~ 297 (413)
||+.. +.++.|+.....+.+.... ..++.+|...+..+.....+ .++....+.+-+|||....++.+.+++
T Consensus 203 ATlda---~kfS~yF~~a~i~~i~GR~---fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~ 276 (674)
T KOG0922|consen 203 ATLDA---EKFSEYFNNAPILTIPGRT---FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACE 276 (674)
T ss_pred eeecH---HHHHHHhcCCceEeecCCC---CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHH
Confidence 99975 4455666664444444432 23445555545544443443 444455577899999999999999999
Q ss_pred HhhhC----CC----eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccC-------------
Q 015129 298 KMRSR----DH----TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------------- 356 (413)
Q Consensus 298 ~L~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~------------- 356 (413)
.|.+. +. -+..+||.++.+++.++++.-..|.-+|+++|+++++.+.++++..||.-|.
T Consensus 277 ~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~ 356 (674)
T KOG0922|consen 277 LLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLD 356 (674)
T ss_pred HHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCcc
Confidence 99765 11 2457899999999999999888899999999999999999999999996553
Q ss_pred -----CCChhhHHHhhhhccCCCCcceEEEEeccCcH
Q 015129 357 -----PTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 388 (413)
Q Consensus 357 -----~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 388 (413)
|.|.++-.||.||+||.| +|+|+.+|++.+.
T Consensus 357 ~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 357 SLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred ceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 457888999999999996 6999999998765
No 110
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=5.5e-24 Score=198.48 Aligned_cols=317 Identities=19% Similarity=0.194 Sum_probs=217.0
Q ss_pred CCcHHHHhhhhhhhc----CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 62 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.+.+||++.++.+.+ +...|+-..+|.|||...+..+......++-..++|||||. .+..||..+|..|.. ..
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p--~~ 281 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWP--PF 281 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCc--ce
Confidence 579999999988764 67789999999999977543333333332434599999995 778999999999876 56
Q ss_pred EEEEEEcCcch---------HHHHH----HHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHH
Q 015129 138 KVHACVGGTSV---------REDQR----ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 204 (413)
Q Consensus 138 ~~~~~~~~~~~---------~~~~~----~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~ 204 (413)
++.++++.... ..... .......|+|+|++.+.-. ...+....++++|+||.|.+.+.+. .+.
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpns--~is 357 (923)
T KOG0387|consen 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPNS--KIS 357 (923)
T ss_pred EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCcc--HHH
Confidence 77777766552 11111 1123467999999887422 1223333468999999999987763 333
Q ss_pred HHHhhCCCCceEEEEEeeCCHhH-HHHHH---Hhc---------------------------------------------
Q 015129 205 DIFQLLPAKVQVGVFSATMPPEA-LEITR---KFM--------------------------------------------- 235 (413)
Q Consensus 205 ~~~~~~~~~~~~i~~SaT~~~~~-~~~~~---~~~--------------------------------------------- 235 (413)
..+..++ ..+.|++|+||..+. .++.. ...
T Consensus 358 lackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI 436 (923)
T KOG0387|consen 358 LACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLI 436 (923)
T ss_pred HHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 3333443 445777888885321 11100 000
Q ss_pred ------------------CCCEEEEe-cC--------------------------------------Cc---cccc--Ce
Q 015129 236 ------------------NKPVRILV-KR--------------------------------------DE---LTLE--GI 253 (413)
Q Consensus 236 ------------------~~~~~~~~-~~--------------------------------------~~---~~~~--~~ 253 (413)
.+...+.. .- .. .... ..
T Consensus 437 ~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~ 516 (923)
T KOG0387|consen 437 SPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDE 516 (923)
T ss_pred HHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccc
Confidence 00000000 00 00 0000 00
Q ss_pred EE--EEEEeccccchHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhh-hCCCeeEEecCCCCHHHHHHHHHHHhcC
Q 015129 254 KQ--FYVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMR-SRDHTVSATHGDMDQNTRDIIMREFRSG 328 (413)
Q Consensus 254 ~~--~~~~~~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 328 (413)
.+ .+.-......++..+..++..+ .+.++|+|..++.....+-..|. ..|+.+..+.|.++...|..+++.|+++
T Consensus 517 ~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~ 596 (923)
T KOG0387|consen 517 KQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNED 596 (923)
T ss_pred ccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCC
Confidence 00 0001112345788888888755 55699999999999999999998 6899999999999999999999999987
Q ss_pred CCc--EEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcc--eEEEEeccC
Q 015129 329 SSR--VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG--VAINFVTRD 386 (413)
Q Consensus 329 ~~~--vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~--~~~~~~~~~ 386 (413)
+.- .|++|.+.+-|+|+.+++.||+||+.|++..=.|+.-|+.|.|+.. .+|.+++..
T Consensus 597 ~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 597 ESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred CceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 643 5678889999999999999999999999999999999999999864 566677765
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.3e-23 Score=201.76 Aligned_cols=320 Identities=21% Similarity=0.260 Sum_probs=215.7
Q ss_pred CCcHHHHhhhhhhhcC----CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 62 KPSAIQQRGIVPFCKG----LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~----~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.+.+-|..+++.+.+. ...++.+.||||||.+|+-++...+..++ .+|+++|-.+|..|+.++|+... +.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk---qvLvLVPEI~Ltpq~~~rf~~rF---g~ 271 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK---QVLVLVPEIALTPQLLARFKARF---GA 271 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC---EEEEEeccccchHHHHHHHHHHh---CC
Confidence 6778899999998765 67899999999999999999998888776 99999999999999999998864 46
Q ss_pred EEEEEEcCcchH----HHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC-----cH-HHHHHHH
Q 015129 138 KVHACVGGTSVR----EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-----FK-DQIYDIF 207 (413)
Q Consensus 138 ~~~~~~~~~~~~----~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~-----~~-~~~~~~~ 207 (413)
++..++++.+.. .|.+.......|+|+|-..++ ..++++++||+||=|.-.... |. ..+.-..
T Consensus 272 ~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~R 344 (730)
T COG1198 272 KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLR 344 (730)
T ss_pred ChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHH
Confidence 677777666544 344455678899999976664 356678999999999754221 22 3333333
Q ss_pred hhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccc---hHHHHHHHHHh--hcccce
Q 015129 208 QLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEW---KLETLCDLYET--LAITQS 282 (413)
Q Consensus 208 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~--~~~~~~ 282 (413)
.. ..++++|+-||||.-+........-.....+........++.+.-.-........ --..+.+.++. ..+..+
T Consensus 345 a~-~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~ 423 (730)
T COG1198 345 AK-KENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQV 423 (730)
T ss_pred HH-HhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeE
Confidence 33 3577899999999866544432221111111112222223332222111111111 11333333322 245688
Q ss_pred EEEEccHHHHHHH------------------------------------------------------------HHHhhhC
Q 015129 283 VIFVNTRRKVDWL------------------------------------------------------------TDKMRSR 302 (413)
Q Consensus 283 lif~~~~~~~~~l------------------------------------------------------------~~~L~~~ 302 (413)
|+|.|.+-.+-.+ .+.|+..
T Consensus 424 llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~ 503 (730)
T COG1198 424 LLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRL 503 (730)
T ss_pred EEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHH
Confidence 8888887544222 2222221
Q ss_pred --CCeeEEecCCCCHHH--HHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCC------------ChhhHHHh
Q 015129 303 --DHTVSATHGDMDQNT--RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------------QPENYLHR 366 (413)
Q Consensus 303 --~~~~~~~~~~~~~~~--r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~------------s~~~~~Q~ 366 (413)
+..+..+.++.+... -...++.|.+|+.+|||.|+++..|.|+|+++.|..++... +...+.|.
T Consensus 504 FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Qv 583 (730)
T COG1198 504 FPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQV 583 (730)
T ss_pred CCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHH
Confidence 244555555554332 46789999999999999999999999999999987655421 34567899
Q ss_pred hhhccCCCCcceEEEEeccCcHHHHHHHH
Q 015129 367 IGRSGRFGRKGVAINFVTRDDERMLFDIQ 395 (413)
Q Consensus 367 ~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 395 (413)
.||+||.+.+|.+++-....+...++.+.
T Consensus 584 aGRAgR~~~~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 584 AGRAGRAGKPGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred HhhhccCCCCCeEEEEeCCCCcHHHHHHH
Confidence 99999999999999999888877776553
No 112
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=3.1e-23 Score=189.75 Aligned_cols=310 Identities=15% Similarity=0.228 Sum_probs=216.7
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHH-HHhhcccCcEEE
Q 015129 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVM-RALGDYLGVKVH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~-~~~~~~~~~~~~ 140 (413)
..+++-.+.+.++.+++-++|.|.||||||...--.+... .....+.++-+.-|++.-|..++.+. +++...+|-.|+
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~Ea-Gytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVG 343 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEA-GYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVG 343 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhc-ccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccc
Confidence 3466677888899999999999999999998754433332 22233435888889998888776555 344444433332
Q ss_pred EEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHh--ccCcHHHHHHHHhhCCCCceEEE
Q 015129 141 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML--SRGFKDQIYDIFQLLPAKVQVGV 218 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~--~~~~~~~~~~~~~~~~~~~~~i~ 218 (413)
.-..-.+.. ....-|-++|.++|++-+... ..+..+++||+||||.=. ..-....+..+ ..+++..++++
T Consensus 344 YsIRFEdcT------SekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDI-ar~RpdLKllI 415 (902)
T KOG0923|consen 344 YSIRFEDCT------SEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDI-ARFRPDLKLLI 415 (902)
T ss_pred eEEEecccc------CcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHH-HhhCCcceEEe
Confidence 211111110 123457799999998777653 467779999999999621 11112223333 34456888999
Q ss_pred EEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHH---hhcccceEEEEccHHHHHHH
Q 015129 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYE---TLAITQSVIFVNTRRKVDWL 295 (413)
Q Consensus 219 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~lif~~~~~~~~~l 295 (413)
+|||+.. +-++.|+.+...+.+.... ..+..+|...+..+..-..+..+++ ..+.+-+|||....+..+..
T Consensus 416 sSAT~DA---ekFS~fFDdapIF~iPGRR---yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~ 489 (902)
T KOG0923|consen 416 SSATMDA---EKFSAFFDDAPIFRIPGRR---YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETV 489 (902)
T ss_pred eccccCH---HHHHHhccCCcEEeccCcc---cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHH
Confidence 9999975 3455666665555554433 2344555555555444444444443 33668899999999988888
Q ss_pred HHHhhhC---------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccC----------
Q 015129 296 TDKMRSR---------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL---------- 356 (413)
Q Consensus 296 ~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~---------- 356 (413)
.+.|.+. .+-++.++++++...+.++++---+|.-+|++||+++++.+.|+++..||.-|.
T Consensus 490 ~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprt 569 (902)
T KOG0923|consen 490 KENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRT 569 (902)
T ss_pred HHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCc
Confidence 8777653 356788999999999999999888899999999999999999999999996553
Q ss_pred --------CCChhhHHHhhhhccCCCCcceEEEEeccCc
Q 015129 357 --------PTQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 357 --------~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 387 (413)
|-|.+.-.||.||+||.| +|.|+.+|+...
T Consensus 570 GmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~a 607 (902)
T KOG0923|consen 570 GMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWA 607 (902)
T ss_pred CceeEEEeeechhhhhhhccccCCCC-CCceEEeechhh
Confidence 456778899999999997 599999998653
No 113
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.92 E-value=1.7e-24 Score=210.10 Aligned_cols=349 Identities=17% Similarity=0.167 Sum_probs=232.1
Q ss_pred chhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhc----CCcEEEeCCCCCcchHHhHHHHHHccccCCCcee
Q 015129 35 YDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ 110 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~ 110 (413)
+......|..+..++..... .++|.+|.+.++.++. ++++|+...+|.|||...+..+-.........+.
T Consensus 349 ~~~~rp~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gp 422 (1373)
T KOG0384|consen 349 YRPQRPRFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGP 422 (1373)
T ss_pred cCccchhHHHhhcCcccccc------chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCC
Confidence 33344445555444444433 4899999999988764 7899999999999998765444444444444558
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHH----c-----CCcEEEEccHHHHHHHHcCCCCCC
Q 015129 111 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ----A-----GVHVVVGTPGRVFDMLRRQSLRPD 181 (413)
Q Consensus 111 ~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~iii~T~~~l~~~~~~~~~~~~ 181 (413)
.|||+|...+ ..|.+.|..|. ++++.+.+|........+... . +.++++||++.++.--. .+..-
T Consensus 423 flvvvplst~-~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i 496 (1373)
T KOG0384|consen 423 FLVVVPLSTI-TAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKI 496 (1373)
T ss_pred eEEEeehhhh-HHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccC
Confidence 9999998774 45777888876 688899998877665443321 2 47899999998753222 12222
Q ss_pred cceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCH-hHHHHHHHhcC--CCEEEEec--------------
Q 015129 182 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPP-EALEITRKFMN--KPVRILVK-------------- 244 (413)
Q Consensus 182 ~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~~~~~~~--~~~~~~~~-------------- 244 (413)
.+.++++||||++.+.. ...+.. +..+.-+. .+++|+||-. ++.++.. +++ .|..+...
T Consensus 497 ~w~~~~vDeahrLkN~~-~~l~~~-l~~f~~~~-rllitgTPlQNsikEL~s-Ll~Fl~P~kf~~~~~f~~~~~~~~e~~ 572 (1373)
T KOG0384|consen 497 PWRYLLVDEAHRLKNDE-SKLYES-LNQFKMNH-RLLITGTPLQNSLKELWS-LLHFLMPGKFDSWDEFLEEFDEETEEQ 572 (1373)
T ss_pred CcceeeecHHhhcCchH-HHHHHH-HHHhcccc-eeeecCCCccccHHHHHH-HhcccCCCCCCcHHHHHHhhcchhHHH
Confidence 35789999999986554 233333 44443333 5777888753 2222221 110 01000000
Q ss_pred -------------------CCcccccCeEEEE------------------------------------------------
Q 015129 245 -------------------RDELTLEGIKQFY------------------------------------------------ 257 (413)
Q Consensus 245 -------------------~~~~~~~~~~~~~------------------------------------------------ 257 (413)
.....++..+...
T Consensus 573 ~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHp 652 (1373)
T KOG0384|consen 573 VRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHP 652 (1373)
T ss_pred HHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCc
Confidence 0000000000000
Q ss_pred -EEeccc----------------------cchHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCC
Q 015129 258 -VNVEKE----------------------EWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGD 312 (413)
Q Consensus 258 -~~~~~~----------------------~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~ 312 (413)
..-... .+++-.|..++.+. .+.+||||...+...+-+.++|..+++....+.|.
T Consensus 653 yLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGs 732 (1373)
T KOG0384|consen 653 YLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGS 732 (1373)
T ss_pred cccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCC
Confidence 000000 01111223333322 45699999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhc---CCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCc--ceEEEEeccC-
Q 015129 313 MDQNTRDIIMREFRS---GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRD- 386 (413)
Q Consensus 313 ~~~~~r~~~~~~f~~---~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~- 386 (413)
...+.|...++.|+. ...-.|+||.+.+.|||+..++.||+||..|++..=+|+..|++|.|+. -.+|.+++..
T Consensus 733 vrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 733 VRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred cchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 999999999999985 3456889999999999999999999999999999999999999999987 5688889886
Q ss_pred -cHHHHHHHHHHhc
Q 015129 387 -DERMLFDIQKFYN 399 (413)
Q Consensus 387 -~~~~~~~~~~~~~ 399 (413)
+..++.+-.+.+.
T Consensus 813 vEeEilERAk~Kmv 826 (1373)
T KOG0384|consen 813 VEEEILERAKLKMV 826 (1373)
T ss_pred hHHHHHHHHHHHhh
Confidence 4445554444443
No 114
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.92 E-value=3.2e-22 Score=202.45 Aligned_cols=334 Identities=14% Similarity=0.140 Sum_probs=205.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhhh----hhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHH
Q 015129 47 LQENLLRGIYAYGFEKPSAIQQRGIV----PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 122 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~----~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 122 (413)
+++.+.+.+...|+ ++|+.|.+.++ .+.+++++++.||||+|||++|+++++.... .+.+++|.+||++|..
T Consensus 231 ~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~ 306 (850)
T TIGR01407 231 LSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQS 306 (850)
T ss_pred ccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHH
Confidence 33466677777888 58999998666 4556899999999999999999999987655 2339999999999999
Q ss_pred HHHH-HHHHhhcccC--cEEEEEEcCcchH--------------------------------------------------
Q 015129 123 QIEK-VMRALGDYLG--VKVHACVGGTSVR-------------------------------------------------- 149 (413)
Q Consensus 123 q~~~-~~~~~~~~~~--~~~~~~~~~~~~~-------------------------------------------------- 149 (413)
|+.. .+..+...++ +++..+.|..+.-
T Consensus 307 Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~ 386 (850)
T TIGR01407 307 QLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFF 386 (850)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhH
Confidence 9865 4554443333 4555444333210
Q ss_pred ---------------------HHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCc---------
Q 015129 150 ---------------------EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF--------- 199 (413)
Q Consensus 150 ---------------------~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~--------- 199 (413)
...+.....++|+||++.-|+..+......+...+++|+||||++.+...
T Consensus 387 ~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~ 466 (850)
T TIGR01407 387 AQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDY 466 (850)
T ss_pred HHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCH
Confidence 00001112578999999988777654333345568999999998663110
Q ss_pred ---HHH----------------------------------------------------------------HHHHHhh---
Q 015129 200 ---KDQ----------------------------------------------------------------IYDIFQL--- 209 (413)
Q Consensus 200 ---~~~----------------------------------------------------------------~~~~~~~--- 209 (413)
... +......
T Consensus 467 ~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~ 546 (850)
T TIGR01407 467 ADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKD 546 (850)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 000 0000000
Q ss_pred --------C-------------------------------------CCCceEEEEEeeCCHh-HHHHHHHhcCCCEE--E
Q 015129 210 --------L-------------------------------------PAKVQVGVFSATMPPE-ALEITRKFMNKPVR--I 241 (413)
Q Consensus 210 --------~-------------------------------------~~~~~~i~~SaT~~~~-~~~~~~~~~~~~~~--~ 241 (413)
+ +....+|++|||+... ..+.+...++.... .
T Consensus 547 ~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~ 626 (850)
T TIGR01407 547 DFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFN 626 (850)
T ss_pred HHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccc
Confidence 0 0124678999998632 23444444443211 1
Q ss_pred EecCCcccccCeEEEEEEecc-------ccchH----HHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCC--CeeEE
Q 015129 242 LVKRDELTLEGIKQFYVNVEK-------EEWKL----ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD--HTVSA 308 (413)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~--~~~~~ 308 (413)
.....+.....-...+....- ..... +.+.+++.. .++++|||++|.+..+.++..|.... .....
T Consensus 627 ~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~ 705 (850)
T TIGR01407 627 TIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV 705 (850)
T ss_pred eecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccccCceE
Confidence 111111111111122221111 01112 223333332 45799999999999999999997521 12223
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCc--EEEEccCCCC---------------------------
Q 015129 309 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS--LVINYDLPTQ--------------------------- 359 (413)
Q Consensus 309 ~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~--~vi~~~~~~s--------------------------- 359 (413)
+..+.. ..|.++++.|++++..||++|..+.+|+|+++.. +||+.+.|..
T Consensus 706 l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~l 784 (850)
T TIGR01407 706 LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVL 784 (850)
T ss_pred EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhH
Confidence 333333 4688999999999999999999999999999754 5777776631
Q ss_pred ---hhhHHHhhhhccCCCCcceEEEEeccC
Q 015129 360 ---PENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 360 ---~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 386 (413)
...+.|.+||+.|..++.-++++++.+
T Consensus 785 P~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 785 PMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred HHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 234689999999987664455555554
No 115
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=1.7e-22 Score=190.96 Aligned_cols=317 Identities=19% Similarity=0.235 Sum_probs=220.6
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|+ .|++.|.-+.-.+.+|+ +..+.||.|||+++.+++......+. .+.+++|+.-||.+-++++..+...+|+
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~---~VhvvT~NdyLA~RDae~m~~ly~~LGL 148 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGR---RVHVITVNDYLARRDAEWMGPLYEALGL 148 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCC---CeEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 355 89999999998888887 88999999999999888876665555 8999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHcC------CCCCCcceEEEeccchHHh-ccC-----------
Q 015129 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIKMFVLDEADEML-SRG----------- 198 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~------~~~~~~~~~iV~DE~h~~~-~~~----------- 198 (413)
++..+.++.+........ .+||+++|...| +++++.. ......+.+.|+||++.++ +..
T Consensus 149 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~ 226 (764)
T PRK12326 149 TVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTP 226 (764)
T ss_pred EEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCc
Confidence 999998887766554444 489999998765 3333321 1122447899999999644 100
Q ss_pred ---cHHHHHHHHhhCCC---------------------------------------------------------------
Q 015129 199 ---FKDQIYDIFQLLPA--------------------------------------------------------------- 212 (413)
Q Consensus 199 ---~~~~~~~~~~~~~~--------------------------------------------------------------- 212 (413)
....+..+...+..
T Consensus 227 ~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 306 (764)
T PRK12326 227 GEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIV 306 (764)
T ss_pred chhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 00000000000000
Q ss_pred -------------------------------------------------------CceEEEEEeeCCHhHHHHHHHhcCC
Q 015129 213 -------------------------------------------------------KVQVGVFSATMPPEALEITRKFMNK 237 (413)
Q Consensus 213 -------------------------------------------------------~~~~i~~SaT~~~~~~~~~~~~~~~ 237 (413)
-.++.+||+|...+..+ +...++-
T Consensus 307 ~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~E-f~~iY~l 385 (764)
T PRK12326 307 RDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQ-LRQFYDL 385 (764)
T ss_pred ECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHH-HHHHhCC
Confidence 04577888888665544 4444444
Q ss_pred CEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHH-h-hcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCH
Q 015129 238 PVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYE-T-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQ 315 (413)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 315 (413)
.+.......+.........++ .+...+...+.+-+. . ..+.++||.+.|++..+.+++.|.+.|++..++++....
T Consensus 386 ~Vv~IPtnkp~~R~d~~d~iy--~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~ 463 (764)
T PRK12326 386 GVSVIPPNKPNIREDEADRVY--ATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDA 463 (764)
T ss_pred cEEECCCCCCceeecCCCceE--eCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchH
Confidence 433222222111111111111 223345655555443 3 256699999999999999999999999999999987543
Q ss_pred HHHHHHHHHHhcCC-CcEEEEcCCCCCCCCCCC---------------CcEEEEccCCCChhhHHHhhhhccCCCCcceE
Q 015129 316 NTRDIIMREFRSGS-SRVLITTDLLARGIDVQQ---------------VSLVINYDLPTQPENYLHRIGRSGRFGRKGVA 379 (413)
Q Consensus 316 ~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~~---------------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~ 379 (413)
.+ .+++. +.|+ -.|.|||+++++|.|+.- -=|||-...+.|..--.|..||+||.|.+|.+
T Consensus 464 ~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss 540 (764)
T PRK12326 464 EE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSS 540 (764)
T ss_pred hH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCce
Confidence 33 33333 3343 458999999999999862 34788888899999999999999999999999
Q ss_pred EEEeccCcH
Q 015129 380 INFVTRDDE 388 (413)
Q Consensus 380 ~~~~~~~~~ 388 (413)
..|++-.|.
T Consensus 541 ~f~lSleDd 549 (764)
T PRK12326 541 VFFVSLEDD 549 (764)
T ss_pred eEEEEcchh
Confidence 888887764
No 116
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=7.3e-23 Score=198.83 Aligned_cols=124 Identities=19% Similarity=0.241 Sum_probs=109.6
Q ss_pred cchHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 015129 264 EWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 341 (413)
Q Consensus 264 ~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~ 341 (413)
..+...+...+... .+.++||||+|++.++.+++.|...|+.+.++|+ .+.+|+..+..|..+...|+|||+++++
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 45778888877554 6679999999999999999999999999999997 5778999999999999999999999999
Q ss_pred CCCCC---CCc-----EEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHH
Q 015129 342 GIDVQ---QVS-----LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 389 (413)
Q Consensus 342 G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 389 (413)
|+|++ .+. +||....|.|...+.|++||+||.|.+|.+.+|++..|.-
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999 343 3477888889999999999999999999999999987643
No 117
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.91 E-value=7.6e-22 Score=175.06 Aligned_cols=327 Identities=15% Similarity=0.178 Sum_probs=221.1
Q ss_pred CCcHHHHhhhhhhh-cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEE
Q 015129 62 KPSAIQQRGIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
.+-|+|++.+...+ +|.++++...+|.|||..++..+..+.... ..|||||. .+...|.+.+..|...... +.
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEw----plliVcPA-svrftWa~al~r~lps~~p-i~ 271 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEW----PLLIVCPA-SVRFTWAKALNRFLPSIHP-IF 271 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcC----cEEEEecH-HHhHHHHHHHHHhcccccc-eE
Confidence 57899999998854 589999999999999999765444433332 78999995 5577799999998876544 33
Q ss_pred EEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 141 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
+..++.+.... +.....|.|.+++.+..+-. .+....+++||+||+|++.+.. .+..+.+...+....++|++|
T Consensus 272 vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhvILLS 345 (689)
T KOG1000|consen 272 VVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHVILLS 345 (689)
T ss_pred EEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhheEEec
Confidence 44433332211 11224688999998754332 2233347899999999886544 444555555555566799999
Q ss_pred eeCC-------------------HhHHHHHHHhcCCC-EEEEecCCc--------------------------ccccCeE
Q 015129 221 ATMP-------------------PEALEITRKFMNKP-VRILVKRDE--------------------------LTLEGIK 254 (413)
Q Consensus 221 aT~~-------------------~~~~~~~~~~~~~~-~~~~~~~~~--------------------------~~~~~~~ 254 (413)
+||. ++..++..+|+... ..+-..... -.|+.-+
T Consensus 346 GTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr 425 (689)
T KOG1000|consen 346 GTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRR 425 (689)
T ss_pred CCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccce
Confidence 9984 11222333333211 111111000 0011111
Q ss_pred EEEEEecc------------------------------------ccchHHHHHHHHHh------hcccceEEEEccHHHH
Q 015129 255 QFYVNVEK------------------------------------EEWKLETLCDLYET------LAITQSVIFVNTRRKV 292 (413)
Q Consensus 255 ~~~~~~~~------------------------------------~~~~~~~l~~~~~~------~~~~~~lif~~~~~~~ 292 (413)
...+.... ...+...+.+.+.. .++.|.+||+......
T Consensus 426 ~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vL 505 (689)
T KOG1000|consen 426 EVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVL 505 (689)
T ss_pred EEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHH
Confidence 11111111 01123333333332 2445899999999999
Q ss_pred HHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcC-CCcE-EEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhc
Q 015129 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG-SSRV-LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 370 (413)
Q Consensus 293 ~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~v-li~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~ 370 (413)
+.+...++++++....+.|..+..+|....+.|+.. +.+| +++..+.+.|+++...+.|++...+|++.-++|+-.|+
T Consensus 506 d~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRa 585 (689)
T KOG1000|consen 506 DTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRA 585 (689)
T ss_pred HHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhh
Confidence 999999999999999999999999999999999964 4554 45667899999999999999999999999999999999
Q ss_pred cCCCCcceEEEEec--c--CcHHHHHHHHHHhcc
Q 015129 371 GRFGRKGVAINFVT--R--DDERMLFDIQKFYNV 400 (413)
Q Consensus 371 ~R~g~~~~~~~~~~--~--~~~~~~~~~~~~~~~ 400 (413)
+|.|+...+.++|. . .|+..+..+++.++.
T Consensus 586 HRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~v 619 (689)
T KOG1000|consen 586 HRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDV 619 (689)
T ss_pred hhccccceeeEEEEEecCchHHHHHHHHHHHHHH
Confidence 99999866544443 3 377888888877754
No 118
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.90 E-value=2.6e-21 Score=184.98 Aligned_cols=319 Identities=19% Similarity=0.151 Sum_probs=200.6
Q ss_pred CCcHHHHhhhhhhhc---C-------CcEEEeCCCCCcchHHhHHHHHHccccCCC----ceeEEEEcCcHHHHHHHHHH
Q 015129 62 KPSAIQQRGIVPFCK---G-------LDVIQQAQSGTGKTATFCSGILQQLDYGLV----QCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~---~-------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~liv~P~~~l~~q~~~~ 127 (413)
.++|||++++..+.+ | ..+|+...+|+|||+..+..+...+..... ..+.|||+| ..|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHHH
Confidence 579999999998765 2 357889999999999866555555544333 158999999 5789999999
Q ss_pred HHHhhcccCcEEEEEEcCcchHHH--HHHH-----HcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcH
Q 015129 128 MRALGDYLGVKVHACVGGTSVRED--QRIL-----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK 200 (413)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~ 200 (413)
|.+|.....+....+.+..+.... ...+ .-..-+++.+++.+.+..+. +....++++|+||.|++.+..
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~~-- 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNSD-- 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccchh--
Confidence 999987656666667766663110 1111 11345888899988766654 344558999999999985544
Q ss_pred HHHHHHHhhCCCCceEEEEEeeCCH-hHHHHHHHh-------cC----------CCE-----------------------
Q 015129 201 DQIYDIFQLLPAKVQVGVFSATMPP-EALEITRKF-------MN----------KPV----------------------- 239 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~~~~~-------~~----------~~~----------------------- 239 (413)
..+...+..+. -.+.|++|+||-. +..+.+.-+ ++ .+.
T Consensus 393 s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~ 471 (776)
T KOG0390|consen 393 SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELR 471 (776)
T ss_pred hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHH
Confidence 33334444443 4557888999852 122211100 00 000
Q ss_pred -------EEEec-CCcccccCeEEEEEEeccc------------------------------------------------
Q 015129 240 -------RILVK-RDELTLEGIKQFYVNVEKE------------------------------------------------ 263 (413)
Q Consensus 240 -------~~~~~-~~~~~~~~~~~~~~~~~~~------------------------------------------------ 263 (413)
..... ......+........+...
T Consensus 472 ~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~ 551 (776)
T KOG0390|consen 472 ELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEK 551 (776)
T ss_pred HHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccc
Confidence 00000 0000001111111111111
Q ss_pred -------------------------cchHHHHHHHHHhh---cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCH
Q 015129 264 -------------------------EWKLETLCDLYETL---AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQ 315 (413)
Q Consensus 264 -------------------------~~~~~~l~~~~~~~---~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 315 (413)
..++..|..++... ...++.+..|.....+.+...++-+|..+..++|.++.
T Consensus 552 e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~ 631 (776)
T KOG0390|consen 552 EKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSI 631 (776)
T ss_pred cccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCch
Confidence 11222222222111 11133444455555555555555669999999999999
Q ss_pred HHHHHHHHHHhcCC--CcEE-EEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceE--EEEeccC
Q 015129 316 NTRDIIMREFRSGS--SRVL-ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA--INFVTRD 386 (413)
Q Consensus 316 ~~r~~~~~~f~~~~--~~vl-i~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~--~~~~~~~ 386 (413)
.+|+.+++.|+... ..|+ .++.+.++||++-+++.||++|+.|+++.-.|+++|+.|.|+.-.| |.+++..
T Consensus 632 ~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 632 KQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred HHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 99999999999743 2454 4567999999999999999999999999999999999999997554 4455544
No 119
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.90 E-value=3.9e-22 Score=189.59 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=119.2
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhh-cccCcEEE
Q 015129 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALG-DYLGVKVH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~-~~~~~~~~ 140 (413)
.|-.+|++.+..+=++...+|+|||.+|||++...++-..+... ..+-++++.|+++|+.|....+.... ...-....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes-D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES-DSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhc-CCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 57789999999998999999999999999999766665555444 34499999999999999988776654 22222333
Q ss_pred EEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHc---CCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEE
Q 015129 141 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR---QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVG 217 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~---~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
.+.|..+.+.... .-.|+|+||-|+.+...+.. ...+.+++++||+||+|.+.+..-...++.+.... .+.++
T Consensus 590 sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L 665 (1330)
T KOG0949|consen 590 SLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFL 665 (1330)
T ss_pred hhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCee
Confidence 3444444333222 22589999999999888776 55677889999999999988776566666666554 56699
Q ss_pred EEEeeCCHh
Q 015129 218 VFSATMPPE 226 (413)
Q Consensus 218 ~~SaT~~~~ 226 (413)
++|||..+.
T Consensus 666 ~LSATigN~ 674 (1330)
T KOG0949|consen 666 VLSATIGNP 674 (1330)
T ss_pred EEecccCCH
Confidence 999998653
No 120
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=8.2e-23 Score=181.47 Aligned_cols=311 Identities=16% Similarity=0.163 Sum_probs=206.3
Q ss_pred CCCcHHHHhhhhhhhcC---CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 61 EKPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~---~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
..+||+|.+++..+.-+ ++.+|+.|+|+|||++.+-+++. ...++|++|.+...++||...+..|...-+-
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t------ikK~clvLcts~VSVeQWkqQfk~wsti~d~ 374 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT------IKKSCLVLCTSAVSVEQWKQQFKQWSTIQDD 374 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee------ecccEEEEecCccCHHHHHHHHHhhcccCcc
Confidence 47999999999997753 67899999999999886443321 2238999999999999999999999866666
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHc--------CCCCCCcceEEEeccchHHhccCcHHHHHHHHhh
Q 015129 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR--------QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 209 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~--------~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~ 209 (413)
.+..++.+... ....+++|+|+|+.++..--++ ..+.-..++++++||+|-+...-|...+.-+...
T Consensus 375 ~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aH 449 (776)
T KOG1123|consen 375 QICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAH 449 (776)
T ss_pred ceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHH
Confidence 66666654332 2345789999999776321110 0112233789999999987555555444444433
Q ss_pred CCCCceEEEEEeeCCHhHHHH--HHHhc-------------CCCEEEEecCC------------cccccC--eEEEEEEe
Q 015129 210 LPAKVQVGVFSATMPPEALEI--TRKFM-------------NKPVRILVKRD------------ELTLEG--IKQFYVNV 260 (413)
Q Consensus 210 ~~~~~~~i~~SaT~~~~~~~~--~~~~~-------------~~~~~~~~~~~------------~~~~~~--~~~~~~~~ 260 (413)
+ .+++|||+-.+.... +..+. .+.....+... ++...+ -+...+..
T Consensus 450 c-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvM 524 (776)
T KOG1123|consen 450 C-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVM 524 (776)
T ss_pred h-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeec
Confidence 3 589999975332111 00000 00000111000 000011 11122222
Q ss_pred ccc-cchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHh-cCCCcEEEEcCC
Q 015129 261 EKE-EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR-SGSSRVLITTDL 338 (413)
Q Consensus 261 ~~~-~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~~vli~t~~ 338 (413)
.+. -...++|.+..++ .+.|+|||..++-....++-.|. --+++|.+++.+|-+|++.|+ +..++-++.+.+
T Consensus 525 NP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKV 598 (776)
T KOG1123|consen 525 NPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKV 598 (776)
T ss_pred CcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHHHHHHHhcccCCccceEEEeec
Confidence 222 1233555555444 67899999999877777776663 346789999999999999999 467888999999
Q ss_pred CCCCCCCCCCcEEEEccCC-CChhhHHHhhhhccCCCC------cceEEEEeccCcHHHHHH
Q 015129 339 LARGIDVQQVSLVINYDLP-TQPENYLHRIGRSGRFGR------KGVAINFVTRDDERMLFD 393 (413)
Q Consensus 339 ~~~G~d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g~------~~~~~~~~~~~~~~~~~~ 393 (413)
..+.+|+|.++++|..+.. .|..+-.||+||..|..+ ....|.+++.+..++...
T Consensus 599 gDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YS 660 (776)
T KOG1123|consen 599 GDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYS 660 (776)
T ss_pred cCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhh
Confidence 9999999999999988664 477889999999999632 256788888876655543
No 121
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=8.4e-22 Score=190.82 Aligned_cols=316 Identities=19% Similarity=0.250 Sum_probs=218.0
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|.-.--.+.+|+ +..+.||+|||+++.++++.....+. .+-+++|+.-||.+-++++..+...+|+
T Consensus 79 lGm-~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G~---~VhvvT~ndyLA~RD~e~m~~l~~~lGl 152 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSGK---GVHVVTVNDYLARRDANWMRPLYEFLGL 152 (913)
T ss_pred hCC-CcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 365 78888887766666666 99999999999999888876655555 8999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHcCCCC-------CCcceEEEeccchHHh-ccC----------
Q 015129 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQSLR-------PDYIKMFVLDEADEML-SRG---------- 198 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~~~~-------~~~~~~iV~DE~h~~~-~~~---------- 198 (413)
++.++.++........... ++|+++|..-| +++++.. +. ...+.++|+||+|.++ |..
T Consensus 153 ~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~-~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~ 229 (913)
T PRK13103 153 SVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDN-MAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQA 229 (913)
T ss_pred EEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhcc-ceechhhhcccccceeEechhhheeccccCCceeecCCC
Confidence 9999988777655554443 89999999876 4444432 22 2568899999999643 100
Q ss_pred ------cH------H------------------------------------HHHHHHh----------h-----------
Q 015129 199 ------FK------D------------------------------------QIYDIFQ----------L----------- 209 (413)
Q Consensus 199 ------~~------~------------------------------------~~~~~~~----------~----------- 209 (413)
|. . .+..++. .
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~ 309 (913)
T PRK13103 230 EDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTH 309 (913)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHH
Confidence 00 0 0001000 0
Q ss_pred ----C------CC-------------------------------------------------------------CceEEE
Q 015129 210 ----L------PA-------------------------------------------------------------KVQVGV 218 (413)
Q Consensus 210 ----~------~~-------------------------------------------------------------~~~~i~ 218 (413)
+ .. -.++.+
T Consensus 310 i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsG 389 (913)
T PRK13103 310 VYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSG 389 (913)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhcc
Confidence 0 00 045667
Q ss_pred EEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhh--cccceEEEEccHHHHHHHH
Q 015129 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLT 296 (413)
Q Consensus 219 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~ 296 (413)
||+|...+..+ +...++..+.......+.........++ .+...+..++.+-+... .+.++||-+.|++..+.++
T Consensus 390 MTGTa~te~~E-f~~iY~l~Vv~IPTnkP~~R~D~~d~vy--~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls 466 (913)
T PRK13103 390 MTGTADTEAFE-FRQIYGLDVVVIPPNKPLARKDFNDLVY--LTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMS 466 (913)
T ss_pred CCCCCHHHHHH-HHHHhCCCEEECCCCCCcccccCCCeEE--cCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHH
Confidence 77777655443 3334444433332222222222222222 23334666665555432 5679999999999999999
Q ss_pred HHhhhCCCeeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEcCCCCCCCCCC-----------------------------
Q 015129 297 DKMRSRDHTVSATHGDMDQNTRDIIMREFRSG-SSRVLITTDLLARGIDVQ----------------------------- 346 (413)
Q Consensus 297 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~~G~d~~----------------------------- 346 (413)
+.|...|+...++++.....+ .+++. +.| .-.|.|||+++++|.||.
T Consensus 467 ~~L~~~gi~h~VLNAk~~~~E-A~IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (913)
T PRK13103 467 NLLKKEGIEHKVLNAKYHEKE-AEIIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQK 543 (913)
T ss_pred HHHHHcCCcHHHhccccchhH-HHHHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 999999999988888754333 23333 344 345999999999999985
Q ss_pred --------CCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcH
Q 015129 347 --------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 388 (413)
Q Consensus 347 --------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 388 (413)
+-=|||-...+.|..-=.|..||+||.|.+|.+-.|++-.|.
T Consensus 544 ~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 544 RHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 234677778888998899999999999999999888887654
No 122
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=3.3e-21 Score=187.02 Aligned_cols=130 Identities=25% Similarity=0.351 Sum_probs=113.5
Q ss_pred cchHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 015129 264 EWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 341 (413)
Q Consensus 264 ~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~ 341 (413)
...++.+...+... .+.+++|||++.+.++.+++.|...|+.+..+||+++..+|.++++.|++|+++|+|||+.+++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 34555555555443 4568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEcc-----CCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHH
Q 015129 342 GIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 394 (413)
Q Consensus 342 G~d~~~~~~vi~~~-----~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 394 (413)
|+|+|.+++|++++ .|.+...|+|++||+||. ..|.++++++..+..+...+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 99999999999887 788999999999999998 57999999998654444443
No 123
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.90 E-value=8.5e-22 Score=191.40 Aligned_cols=316 Identities=18% Similarity=0.225 Sum_probs=224.4
Q ss_pred CcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHH-hhcccCcEEEE
Q 015129 63 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHA 141 (413)
Q Consensus 63 ~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~-~~~~~~~~~~~ 141 (413)
.+..+...+..+.+++.++|+|.||+|||......+++.........++++.-|++-.|...+++... .+...|..|..
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGY 253 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGY 253 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeE
Confidence 46678889999999999999999999999998888887765555667899999999888888887754 34444544443
Q ss_pred EEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHh-ccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 142 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
-.+..+.. .....+++||.+.|++.+.. ...+..+.+||+||+|+=. +.++...+.+.+-..++..++|+||
T Consensus 254 qvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMS 326 (924)
T KOG0920|consen 254 QVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMS 326 (924)
T ss_pred EEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEee
Confidence 33222211 12367999999999998877 4457778999999999732 2333444444444445789999999
Q ss_pred eeCCHhHHHHHHHhcCCCEEEEecCCccc----------------ccCeEEEEEEec-----------cccchHHHHHHH
Q 015129 221 ATMPPEALEITRKFMNKPVRILVKRDELT----------------LEGIKQFYVNVE-----------KEEWKLETLCDL 273 (413)
Q Consensus 221 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~l~~~ 273 (413)
||... +.++.|++....+.+....+. .+...+...... ..+-..+.+..+
T Consensus 327 AT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~l 403 (924)
T KOG0920|consen 327 ATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDL 403 (924)
T ss_pred eecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHH
Confidence 99984 445556554443333221110 000111100000 001123333333
Q ss_pred H----HhhcccceEEEEccHHHHHHHHHHhhhC-------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Q 015129 274 Y----ETLAITQSVIFVNTRRKVDWLTDKMRSR-------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 274 ~----~~~~~~~~lif~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
+ +....+.+|||.+...+...+++.|... ..-+..+|+.++..++..+++..-.|..+|+++|++++++
T Consensus 404 i~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETS 483 (924)
T KOG0920|consen 404 IEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETS 483 (924)
T ss_pred HHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhc
Confidence 3 3334678999999999999999999642 2457789999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEccCC------------------CChhhHHHhhhhccCCCCcceEEEEeccCcHH
Q 015129 343 IDVQQVSLVINYDLP------------------TQPENYLHRIGRSGRFGRKGVAINFVTRDDER 389 (413)
Q Consensus 343 ~d~~~~~~vi~~~~~------------------~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 389 (413)
|.++++-+||..+.. .|.+.-.||.||+||. ..|.||.+++.....
T Consensus 484 ITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 484 ITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYE 547 (924)
T ss_pred ccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhh
Confidence 999999999975531 2567789999999998 679999999986443
No 124
>COG4889 Predicted helicase [General function prediction only]
Probab=99.89 E-value=3e-23 Score=195.02 Aligned_cols=319 Identities=18% Similarity=0.214 Sum_probs=191.5
Q ss_pred CCCCCcHHHHhhhhhhhcC----CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcc
Q 015129 59 GFEKPSAIQQRGIVPFCKG----LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~i~~~----~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~ 134 (413)
.-.+|||||+.|+....+| .+.=+.+.+|+|||++++-. .+.+.. .++|+++|+.+|..|..+++..-..
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLki-sEala~----~~iL~LvPSIsLLsQTlrew~~~~~- 231 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKI-SEALAA----ARILFLVPSISLLSQTLREWTAQKE- 231 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHH-HHHHhh----hheEeecchHHHHHHHHHHHhhccC-
Confidence 4458999999999998763 45667788899999997543 333333 4999999999999998888866432
Q ss_pred cCcEEEEEEcCcchHH-----------------------H--HHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEec
Q 015129 135 LGVKVHACVGGTSVRE-----------------------D--QRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLD 189 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~-----------------------~--~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~D 189 (413)
..++...++++..... . ......+--|+++|++++...-+.....+..+++||+|
T Consensus 232 l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicD 311 (1518)
T COG4889 232 LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICD 311 (1518)
T ss_pred ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEec
Confidence 2344444433322111 0 11122345699999999987777767778889999999
Q ss_pred cchHHhccCcHHHHHHHHhhCCC-----CceEEEEEeeCCHhHHHHH---------------------------------
Q 015129 190 EADEMLSRGFKDQIYDIFQLLPA-----KVQVGVFSATMPPEALEIT--------------------------------- 231 (413)
Q Consensus 190 E~h~~~~~~~~~~~~~~~~~~~~-----~~~~i~~SaT~~~~~~~~~--------------------------------- 231 (413)
|||+.....+...-...+.++.. ..+.+.|||||.--.....
T Consensus 312 EAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~ 391 (1518)
T COG4889 312 EAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVE 391 (1518)
T ss_pred chhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHH
Confidence 99986543322211122222211 3457889999852111000
Q ss_pred HHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHH-------Hhh--------------cccceEEEEccHH
Q 015129 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY-------ETL--------------AITQSVIFVNTRR 290 (413)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~--------------~~~~~lif~~~~~ 290 (413)
+.++.+...+...-.+....+.-+....-+.....++....++ ++. +..+++-||.+.+
T Consensus 392 rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~ 471 (1518)
T COG4889 392 RDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIK 471 (1518)
T ss_pred hhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhH
Confidence 0011111111110000000000000000111111222222211 111 1126788999888
Q ss_pred HHHHHHHHhhh---------------CCCeeEEecCCCCHHHHHHHHH---HHhcCCCcEEEEcCCCCCCCCCCCCcEEE
Q 015129 291 KVDWLTDKMRS---------------RDHTVSATHGDMDQNTRDIIMR---EFRSGSSRVLITTDLLARGIDVQQVSLVI 352 (413)
Q Consensus 291 ~~~~l~~~L~~---------------~~~~~~~~~~~~~~~~r~~~~~---~f~~~~~~vli~t~~~~~G~d~~~~~~vi 352 (413)
....+++.+.. ..+.+..+.|.|+..+|...+. .|...+++||-....+++|+|+|.++.||
T Consensus 472 tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsVi 551 (1518)
T COG4889 472 TSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVI 551 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEE
Confidence 77776665542 1345566778899998854444 23456788998889999999999999999
Q ss_pred EccCCCChhhHHHhhhhccCCCC-cceEEEEe
Q 015129 353 NYDLPTQPENYLHRIGRSGRFGR-KGVAINFV 383 (413)
Q Consensus 353 ~~~~~~s~~~~~Q~~GR~~R~g~-~~~~~~~~ 383 (413)
++++..++-+.+|..||++|... ..++|+++
T Consensus 552 Ff~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 552 FFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred EecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 99999999999999999999632 23344443
No 125
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.89 E-value=1.3e-21 Score=189.74 Aligned_cols=317 Identities=21% Similarity=0.245 Sum_probs=213.1
Q ss_pred CCcHHHHhhhhhhhc----CCcEEEeCCCCCcchHHhHHHHHHccccC------CCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 62 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYG------LVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~------~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
.+|.+|++.++.+.- +-+.|++..+|.|||+..+..++...... .....+|||||+ .|+.-|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 579999999988652 56899999999999998765554443332 122359999995 7899999999999
Q ss_pred hcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCC
Q 015129 132 GDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP 211 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~ 211 (413)
+.. +++....|........+.--+.++|+|++++.+.+-+.. +....+.++|+||-|-+.+. ...+.+..+.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 876 555556665554444443345679999999988644432 11223578999999976433 344444444444
Q ss_pred CCceEEEEEeeCCH-hHHHHH---HHhc--------------CCCEEEEecC----------------------------
Q 015129 212 AKVQVGVFSATMPP-EALEIT---RKFM--------------NKPVRILVKR---------------------------- 245 (413)
Q Consensus 212 ~~~~~i~~SaT~~~-~~~~~~---~~~~--------------~~~~~~~~~~---------------------------- 245 (413)
.+. .+.+|+||-. +..++. ..++ ++|+......
T Consensus 1128 a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 343 5667899852 111110 0000 0000000000
Q ss_pred ------CcccccCeEEEE-------------------------------------------------------EEec---
Q 015129 246 ------DELTLEGIKQFY-------------------------------------------------------VNVE--- 261 (413)
Q Consensus 246 ------~~~~~~~~~~~~-------------------------------------------------------~~~~--- 261 (413)
....+..++.+| ....
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 000000011111 0000
Q ss_pred --------------------cccchHHHHHHHHHhh----------------cccceEEEEccHHHHHHHHHHhhhC---
Q 015129 262 --------------------KEEWKLETLCDLYETL----------------AITQSVIFVNTRRKVDWLTDKMRSR--- 302 (413)
Q Consensus 262 --------------------~~~~~~~~l~~~~~~~----------------~~~~~lif~~~~~~~~~l~~~L~~~--- 302 (413)
....|+.++.+++... .+.++||||+-+...+.+.+.|.+.
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 0122677777777554 2348999999999999998887654
Q ss_pred CCeeEEecCCCCHHHHHHHHHHHhcC-CCcEEE-EcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCc--ce
Q 015129 303 DHTVSATHGDMDQNTRDIIMREFRSG-SSRVLI-TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GV 378 (413)
Q Consensus 303 ~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli-~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--~~ 378 (413)
...+..+.|..++.+|.++.++|+++ .+++|+ +|.+.+.|+|+.+++.||+++-.|++..=.|++.||+|.|++ -.
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 33456899999999999999999998 688775 667999999999999999999999999999999999999987 45
Q ss_pred EEEEeccC
Q 015129 379 AINFVTRD 386 (413)
Q Consensus 379 ~~~~~~~~ 386 (413)
+|.++++.
T Consensus 1447 VyRlItrG 1454 (1549)
T KOG0392|consen 1447 VYRLITRG 1454 (1549)
T ss_pred eeeehhcc
Confidence 77777776
No 126
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=8.7e-22 Score=180.82 Aligned_cols=307 Identities=17% Similarity=0.224 Sum_probs=201.8
Q ss_pred cHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHH-hhcccCcEEEEE
Q 015129 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHAC 142 (413)
Q Consensus 64 ~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~-~~~~~~~~~~~~ 142 (413)
...+.+.+..+..++-++|++.||||||....-.++..=. .. .+-+-+.-|++.-|...+.+..+ +...+|..|+.-
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY-~~-~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYs 435 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGY-AD-NGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYS 435 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccc-cc-CCeeeecCchHHHHHHHHHHHHHHhCCccccccceE
Confidence 4456667777778899999999999999875433332211 12 22555667899888887776654 433334433322
Q ss_pred EcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHh-ccC-cHHHHHHHHhhCCCCceEEEEE
Q 015129 143 VGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-SRG-FKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~-~~~-~~~~~~~~~~~~~~~~~~i~~S 220 (413)
..-.+.. .....|-++|.+.|++-.... ..+..+.+||+||||.=. +.+ .-..+..++.. +...++|.+|
T Consensus 436 IRFEdvT------~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliVtS 507 (1042)
T KOG0924|consen 436 IRFEDVT------SEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIVTS 507 (1042)
T ss_pred EEeeecC------CCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEEee
Confidence 2111111 122468889998886554432 245668999999999732 111 11223333333 3478899999
Q ss_pred eeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHH---HhhcccceEEEEccHHHHHHHHH
Q 015129 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY---ETLAITQSVIFVNTRRKVDWLTD 297 (413)
Q Consensus 221 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~lif~~~~~~~~~l~~ 297 (413)
||+.. +-+..|+++...+.+....+ .+...+...+-.++.-..+.+.+ .....+.+|||....+..+..+.
T Consensus 508 ATm~a---~kf~nfFgn~p~f~IpGRTy---PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~ 581 (1042)
T KOG0924|consen 508 ATMDA---QKFSNFFGNCPQFTIPGRTY---PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCD 581 (1042)
T ss_pred ccccH---HHHHHHhCCCceeeecCCcc---ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHH
Confidence 99975 33445555443333333222 23334443333333333333333 23355789999998877766655
Q ss_pred Hhhh----------CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccC-----------
Q 015129 298 KMRS----------RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL----------- 356 (413)
Q Consensus 298 ~L~~----------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~----------- 356 (413)
.++. .+..+..+++.++..-+.++++.-..|.-+++|||+++++.+.++++.+||.-+.
T Consensus 582 ~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G 661 (1042)
T KOG0924|consen 582 IIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIG 661 (1042)
T ss_pred HHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccc
Confidence 5543 1577889999999999999999888899999999999999999999999997553
Q ss_pred -------CCChhhHHHhhhhccCCCCcceEEEEeccCc
Q 015129 357 -------PTQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 357 -------~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 387 (413)
|.|.+.-.||.||+||.| +|.||.+|+.+.
T Consensus 662 ~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~a 698 (1042)
T KOG0924|consen 662 MDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDA 698 (1042)
T ss_pred cceeEEEechhccchhhccccCCCC-CcceeeehhhhH
Confidence 567788899999999996 699999999863
No 127
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.88 E-value=6.1e-21 Score=161.76 Aligned_cols=187 Identities=40% Similarity=0.592 Sum_probs=148.2
Q ss_pred HCCCCCCcHHHHhhhhhhhcC-CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhccc
Q 015129 57 AYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 135 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~i~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 135 (413)
..++..++++|.++++.+..+ +++++.+|||+|||.++..++++.+.... ..+++|++|+..++.|+...+.......
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 356778999999999999998 99999999999999998888888776653 3389999999999999999999877554
Q ss_pred CcEEEEEEcCcchHHHHHHHHcCC-cEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCc
Q 015129 136 GVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKV 214 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~-~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
........++.............. +++++|++.+.+...........++++|+||+|.+....+...+..+...++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 161 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNV 161 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccc
Confidence 423333333434233333334444 9999999999998887666677788999999999987567888888888887789
Q ss_pred eEEEEEeeCCHhHHHHHHHhcCCCEEEEec
Q 015129 215 QVGVFSATMPPEALEITRKFMNKPVRILVK 244 (413)
Q Consensus 215 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 244 (413)
+++++|||++.........++.....+...
T Consensus 162 ~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 162 QLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred eEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 999999999988888777777765555544
No 128
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=8.3e-21 Score=168.24 Aligned_cols=326 Identities=14% Similarity=0.195 Sum_probs=218.0
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcH
Q 015129 39 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 118 (413)
+++|.+.++++...+.+++..--..+..+.+.++.+.+++.++++|.||||||...--+.+....... ..+.-.-|.+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQprr 101 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQPRR 101 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecCchH
Confidence 88999999999999999887555567777888888889999999999999999877666665554433 3666677888
Q ss_pred HHHHHHHHHHHH-hhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHh--
Q 015129 119 ELAQQIEKVMRA-LGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-- 195 (413)
Q Consensus 119 ~l~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~-- 195 (413)
.-+.+.+.+... +--.+|..|+....-.+..... .-+-+||.++|++-..+.. .+.++++||+||+|.=.
T Consensus 102 vaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~------T~Lky~tDgmLlrEams~p-~l~~y~viiLDeahERtlA 174 (699)
T KOG0925|consen 102 VAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPN------TLLKYCTDGMLLREAMSDP-LLGRYGVIILDEAHERTLA 174 (699)
T ss_pred HHHHHHHHHHHHHhccccchhccccccccccCChh------HHHHHhcchHHHHHHhhCc-ccccccEEEechhhhhhHH
Confidence 877777666543 2222233332211111111000 1122577777766555443 46778999999999721
Q ss_pred ccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccch---HHHHHH
Q 015129 196 SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWK---LETLCD 272 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~ 272 (413)
....-..++.+.... +..++|.||||.... -+..|+++...+.+... ..++.+|..-...+.. +..+.+
T Consensus 175 TDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg~----~PvEi~Yt~e~erDylEaairtV~q 246 (699)
T KOG0925|consen 175 TDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPGT----HPVEIFYTPEPERDYLEAAIRTVLQ 246 (699)
T ss_pred HHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCCC----CceEEEecCCCChhHHHHHHHHHHH
Confidence 222234455555554 488999999998753 34567776655555442 2233344433333322 333344
Q ss_pred HHHhhcccceEEEEccHHHHHHHHHHhhhC---------CCeeEEecCCCCHHHHHHHHHHHh---cC--CCcEEEEcCC
Q 015129 273 LYETLAITQSVIFVNTRRKVDWLTDKMRSR---------DHTVSATHGDMDQNTRDIIMREFR---SG--SSRVLITTDL 338 (413)
Q Consensus 273 ~~~~~~~~~~lif~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~---~~--~~~vli~t~~ 338 (413)
+......+.+|+|..+.++.+..++.+... ...+..++ +.++..+++-.. +| .-+|+|+|++
T Consensus 247 ih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstni 322 (699)
T KOG0925|consen 247 IHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNI 322 (699)
T ss_pred HHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecc
Confidence 444446789999999999999999888743 23556666 333344443322 22 2469999999
Q ss_pred CCCCCCCCCCcEEEEccC------------------CCChhhHHHhhhhccCCCCcceEEEEeccC
Q 015129 339 LARGIDVQQVSLVINYDL------------------PTQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 339 ~~~G~d~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 386 (413)
++..+.++++.+||.-|. |.|..+-.||.||+||. .+|+|+.+|++.
T Consensus 323 aetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 323 AETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred hheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 999999999999997553 56888899999999998 689999999875
No 129
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.88 E-value=2.8e-20 Score=167.06 Aligned_cols=164 Identities=24% Similarity=0.282 Sum_probs=127.7
Q ss_pred ceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHh--hcccceEEEEccHHH
Q 015129 214 VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRK 291 (413)
Q Consensus 214 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~ 291 (413)
.|++++||||.+--.+ ..-+..+.-.+.+.....+.+ .+.+....++.+..-+.. ..+.++||-+=+++.
T Consensus 387 ~q~i~VSATPg~~E~e---~s~~~vveQiIRPTGLlDP~i-----evRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 387 PQTIYVSATPGDYELE---QSGGNVVEQIIRPTGLLDPEI-----EVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred CCEEEEECCCChHHHH---hccCceeEEeecCCCCCCCce-----eeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 7899999999863222 222233444444444333322 223334455555444433 245799999999999
Q ss_pred HHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccC-----CCChhhHHHh
Q 015129 292 VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-----PTQPENYLHR 366 (413)
Q Consensus 292 ~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~-----~~s~~~~~Q~ 366 (413)
|+.+.++|.+.|+++.++|++...-+|.++++.++.|.++|||.-+.+-+|+|+|.+..|.++|. ..|...++|.
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988865 5689999999
Q ss_pred hhhccCCCCcceEEEEeccC
Q 015129 367 IGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 367 ~GR~~R~g~~~~~~~~~~~~ 386 (413)
+||+.|. ..|+++.+.+.-
T Consensus 539 IGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 539 IGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHhhc-cCCeEEEEchhh
Confidence 9999997 468999887764
No 130
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.87 E-value=4e-20 Score=180.93 Aligned_cols=145 Identities=26% Similarity=0.344 Sum_probs=127.2
Q ss_pred chHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Q 015129 265 WKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 265 ~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
..++.+...+... .+.+++|||++...++.+++.|...|+.+..+||+++..+|..+++.|++|++.|+|||+.+++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 3455555555433 45689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEccC-----CCChhhHHHhhhhccCCCCcceEEEEecc---------CcHHHHHHHHHHhccccccCCch
Q 015129 343 IDVQQVSLVINYDL-----PTQPENYLHRIGRSGRFGRKGVAINFVTR---------DDERMLFDIQKFYNVVIEELPSN 408 (413)
Q Consensus 343 ~d~~~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 408 (413)
+|+|.+++||+++. |.+...|+||+||+||. ..|.++++++. .+....+.++..++.....+|.+
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 588 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKT 588 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChh
Confidence 99999999998774 78999999999999996 68999999984 47778888899999999888876
Q ss_pred hh
Q 015129 409 VA 410 (413)
Q Consensus 409 ~~ 410 (413)
..
T Consensus 589 ~~ 590 (652)
T PRK05298 589 IK 590 (652)
T ss_pred HH
Confidence 53
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=7.2e-20 Score=175.76 Aligned_cols=316 Identities=17% Similarity=0.207 Sum_probs=214.7
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|.-.--.+.+|+ |..+.||-|||+++.+|+.-....++ .|-||+.+--||..-++++..+...+|+
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~Gk---gVhVVTvNdYLA~RDae~mg~vy~fLGL 148 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGK---GVIVSTVNEYLAERDAEEMGKVFNFLGL 148 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCC---ceEEEecchhhhhhhHHHHHHHHHHhCC
Confidence 365 88999988776666665 89999999999998877754433343 8889999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHcCC------CCCCcceEEEeccchHHh-ccC-----------
Q 015129 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQS------LRPDYIKMFVLDEADEML-SRG----------- 198 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~~------~~~~~~~~iV~DE~h~~~-~~~----------- 198 (413)
++++...+.......... .+||+++|...| +++++... .-...+.+.|+||++.++ +..
T Consensus 149 svG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~ 226 (925)
T PRK12903 149 SVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQS 226 (925)
T ss_pred ceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCc
Confidence 999888776655444443 489999999876 44554321 112447789999999644 100
Q ss_pred ----cHHHHHHHHhhCCC--------------------------------------------------------------
Q 015129 199 ----FKDQIYDIFQLLPA-------------------------------------------------------------- 212 (413)
Q Consensus 199 ----~~~~~~~~~~~~~~-------------------------------------------------------------- 212 (413)
....+..+...+..
T Consensus 227 ~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~ 306 (925)
T PRK12903 227 NDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVR 306 (925)
T ss_pred cchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 00000000000000
Q ss_pred ------------------------------------------------------CceEEEEEeeCCHhHHHHHHHhcCCC
Q 015129 213 ------------------------------------------------------KVQVGVFSATMPPEALEITRKFMNKP 238 (413)
Q Consensus 213 ------------------------------------------------------~~~~i~~SaT~~~~~~~~~~~~~~~~ 238 (413)
-.++.+||+|...+..++.. .++..
T Consensus 307 dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~-iY~l~ 385 (925)
T PRK12903 307 DGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFID-IYNMR 385 (925)
T ss_pred CCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHH-HhCCC
Confidence 04567888887666555443 34433
Q ss_pred EE-EEecCCcccccCeEEEEEEeccccchHHHHHHHHHh-h-cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCH
Q 015129 239 VR-ILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET-L-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQ 315 (413)
Q Consensus 239 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 315 (413)
+. ++...+..+. .....++ .+...+...+..-+.. + .+.++||.|.|.+..+.+++.|.+.|+...++++....
T Consensus 386 Vv~IPTnkP~~R~-D~~d~iy--~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e 462 (925)
T PRK12903 386 VNVVPTNKPVIRK-DEPDSIF--GTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNA 462 (925)
T ss_pred EEECCCCCCeeee-eCCCcEE--EcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchh
Confidence 33 3322221111 1111111 2233455555554443 2 55699999999999999999999999999999987443
Q ss_pred HHHHHHHHHHhcC-CCcEEEEcCCCCCCCCCCCCc--------EEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccC
Q 015129 316 NTRDIIMREFRSG-SSRVLITTDLLARGIDVQQVS--------LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 316 ~~r~~~~~~f~~~-~~~vli~t~~~~~G~d~~~~~--------~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 386 (413)
.+ ..++. +.| .-.|.|||+++++|.|+.--. |||....+.|..---|..||+||.|.+|.+..|++-.
T Consensus 463 ~E-A~IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 463 RE-AEIIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred hH-HHHHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 33 23332 445 445899999999999997433 8888888889888899999999999999988888876
Q ss_pred cH
Q 015129 387 DE 388 (413)
Q Consensus 387 ~~ 388 (413)
|.
T Consensus 540 D~ 541 (925)
T PRK12903 540 DQ 541 (925)
T ss_pred hH
Confidence 54
No 132
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.86 E-value=4.4e-19 Score=177.25 Aligned_cols=315 Identities=18% Similarity=0.209 Sum_probs=192.4
Q ss_pred CCCCCCcHHHHhhhhhhh----cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHH-HHHHHHhh
Q 015129 58 YGFEKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI-EKVMRALG 132 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~-~~~~~~~~ 132 (413)
.|+ +.|+-|.+....+. +++.+++.|+||+|||++|+++++... .+.+++|++||++|++|+ ...+..+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 455 78999998655544 478899999999999999999988753 234999999999999999 46676666
Q ss_pred cccCcEEEEEEcCcchHH------------------------------------------------H-------------
Q 015129 133 DYLGVKVHACVGGTSVRE------------------------------------------------D------------- 151 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~------------------------------------------------~------------- 151 (413)
...++++..+.|+.+.-. +
T Consensus 317 ~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~c 396 (820)
T PRK07246 317 EVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSS 396 (820)
T ss_pred HhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCC
Confidence 556666655554433100 0
Q ss_pred ----------HHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC-----c----H---H--------
Q 015129 152 ----------QRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-----F----K---D-------- 201 (413)
Q Consensus 152 ----------~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~-----~----~---~-------- 201 (413)
.+.....++|+|+++..|...+.... .+...+.+||||||++.+.. . . .
T Consensus 397 p~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (820)
T PRK07246 397 LFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSG 475 (820)
T ss_pred CcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHH
Confidence 00001256899999998877664433 35668999999999865311 0 0 0
Q ss_pred ------------------------------------------HHHHH--------Hhh----------------------
Q 015129 202 ------------------------------------------QIYDI--------FQL---------------------- 209 (413)
Q Consensus 202 ------------------------------------------~~~~~--------~~~---------------------- 209 (413)
.+..+ ...
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~ 555 (820)
T PRK07246 476 PLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTY 555 (820)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeE
Confidence 00000 000
Q ss_pred --------------CCCCceEEEEEeeCC--HhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEE--ecc-----ccch
Q 015129 210 --------------LPAKVQVGVFSATMP--PEALEITRKFMNKPVRILVKRDELTLEGIKQFYVN--VEK-----EEWK 266 (413)
Q Consensus 210 --------------~~~~~~~i~~SaT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~ 266 (413)
++....+|++|||+. +.. . +...++.......... .....-...+.. .+. ...-
T Consensus 556 l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~-~~~~lGl~~~~~~~~~-~~~~~~~~~~i~~~~p~~~~~~~~~~ 632 (820)
T PRK07246 556 LNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-S-LADLLGFEEYLFHKIE-KDKKQDQLVVVDQDMPLVTETSDEVY 632 (820)
T ss_pred EEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-c-HHHHcCCCccceecCC-CChHHccEEEeCCCCCCCCCCChHHH
Confidence 001135778888875 221 2 2333332111110000 111111111111 111 0111
Q ss_pred H----HHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Q 015129 267 L----ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 267 ~----~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
. +.+..+. ..+++++|+++|.+..+.+++.|......+ ...|... .+.+++++|++++..||++|..+.+|
T Consensus 633 ~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEG 707 (820)
T PRK07246 633 AEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEG 707 (820)
T ss_pred HHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCC
Confidence 2 2222322 356899999999999999999997654444 3334222 24668999999888999999999999
Q ss_pred CCCCC--CcEEEEccCCCC------------------------------hhhHHHhhhhccCCCCcceEEEEeccC
Q 015129 343 IDVQQ--VSLVINYDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 343 ~d~~~--~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 386 (413)
+|+|+ ...||+...|.. ...+.|.+||+.|...+--++++++++
T Consensus 708 VD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 708 VDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred CCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 99973 556677776631 234699999999987653345555554
No 133
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.85 E-value=1.6e-19 Score=168.85 Aligned_cols=318 Identities=19% Similarity=0.227 Sum_probs=214.3
Q ss_pred CCcHHHHhhhhhhh----cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 62 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
++.++|.-.++.+. .+-+.|+...+|.|||...+ +.+..+......+.=|||||+..| ..|.+++.+||+ .+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvI-aFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCP--sl 474 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVI-AFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCP--SL 474 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHH-HHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCC--ce
Confidence 58899999888854 35678999999999997754 444445443334478999999885 568888999987 56
Q ss_pred EEEEEEcCcchHHHHHH-HH---cCCcEEEEccHHHHHHH-HcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCC
Q 015129 138 KVHACVGGTSVREDQRI-LQ---AGVHVVVGTPGRVFDML-RRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA 212 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~-~~---~~~~iii~T~~~l~~~~-~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~ 212 (413)
.+...+|........+. +. .+.+|++||+......- .+..+...+++++|+||.|.+.+.. ......+...-
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I~-- 551 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSIN-- 551 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcccc--
Confidence 77778877654433222 11 26899999987542100 0011222347899999999988776 44555554332
Q ss_pred CceEEEEEeeCCH-hHHHHHHHh---cCC---------------------------------------------------
Q 015129 213 KVQVGVFSATMPP-EALEITRKF---MNK--------------------------------------------------- 237 (413)
Q Consensus 213 ~~~~i~~SaT~~~-~~~~~~~~~---~~~--------------------------------------------------- 237 (413)
..+.+++|+||-. ++.+++..+ +.+
T Consensus 552 An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~q 631 (941)
T KOG0389|consen 552 ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQ 631 (941)
T ss_pred ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3347888999842 222221100 000
Q ss_pred -----C---EEE-Eec--CC-----------------c--cc--ccC----------------eEEEE------------
Q 015129 238 -----P---VRI-LVK--RD-----------------E--LT--LEG----------------IKQFY------------ 257 (413)
Q Consensus 238 -----~---~~~-~~~--~~-----------------~--~~--~~~----------------~~~~~------------ 257 (413)
| ..+ .+. .. . .. ..+ +++.|
T Consensus 632 VL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~i 711 (941)
T KOG0389|consen 632 VLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRI 711 (941)
T ss_pred HHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHH
Confidence 0 000 000 00 0 00 000 00000
Q ss_pred --------------------------------------EEecc----ccchHHHHHHHHHhh--cccceEEEEccHHHHH
Q 015129 258 --------------------------------------VNVEK----EEWKLETLCDLYETL--AITQSVIFVNTRRKVD 293 (413)
Q Consensus 258 --------------------------------------~~~~~----~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~ 293 (413)
..+.. ...+...|..++... .+.++|||.......+
T Consensus 712 l~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLD 791 (941)
T KOG0389|consen 712 LNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLD 791 (941)
T ss_pred hCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHH
Confidence 00000 012566666666543 4469999999999999
Q ss_pred HHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCC-Cc-EEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhcc
Q 015129 294 WLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS-SR-VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSG 371 (413)
Q Consensus 294 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~-vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 371 (413)
-+.-.|...++....+.|.+.-..|+.+++.|..++ +. .|++|.+.+.|||+.++++||++|...++-.=.|+-.|++
T Consensus 792 ILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcH 871 (941)
T KOG0389|consen 792 ILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCH 871 (941)
T ss_pred HHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHH
Confidence 999999999999999999999999999999999764 43 5678999999999999999999999999999999999999
Q ss_pred CCCCc--ceEEEEeccC
Q 015129 372 RFGRK--GVAINFVTRD 386 (413)
Q Consensus 372 R~g~~--~~~~~~~~~~ 386 (413)
|.|+. -.++.+++.+
T Consensus 872 RvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 872 RVGQTKPVTVYRLITKS 888 (941)
T ss_pred hhCCcceeEEEEEEecC
Confidence 99986 4577777776
No 134
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=3.3e-20 Score=167.43 Aligned_cols=355 Identities=14% Similarity=0.102 Sum_probs=242.8
Q ss_pred HHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhc
Q 015129 54 GIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 54 ~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~ 133 (413)
.++.+..+....+|.++++.+.+|++.++.-.+.+||.+++..+......... ....+++.|++++++...+.+.-...
T Consensus 278 ~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~V~~~ 356 (1034)
T KOG4150|consen 278 LLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH-ATNSLLPSEMVEHLRNGSKGQVVHVE 356 (1034)
T ss_pred HHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc-ccceecchhHHHHhhccCCceEEEEE
Confidence 33455667889999999999999999999999999999999877765554333 33889999999988765543321111
Q ss_pred cc---CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCC----cceEEEeccchHHhccC---cHHHH
Q 015129 134 YL---GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD----YIKMFVLDEADEMLSRG---FKDQI 203 (413)
Q Consensus 134 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~----~~~~iV~DE~h~~~~~~---~~~~~ 203 (413)
.. .-.++-...+............+.+++++.|+........+..... ...++++||+|.+.... ....+
T Consensus 357 ~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~ 436 (1034)
T KOG4150|consen 357 VIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQL 436 (1034)
T ss_pred ehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHH
Confidence 11 1122333344444555566667889999999887655543333322 24578999999754322 12334
Q ss_pred HHHHhhC-----CCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccc--------cchHHHH
Q 015129 204 YDIFQLL-----PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE--------EWKLETL 270 (413)
Q Consensus 204 ~~~~~~~-----~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l 270 (413)
.++...+ ..+.+++-.++|...........+..+......... .+.+-++++.+.++. +.++...
T Consensus 437 R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG--SPs~~K~~V~WNP~~~P~~~~~~~~~i~E~ 514 (1034)
T KOG4150|consen 437 RALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDG--SPSSEKLFVLWNPSAPPTSKSEKSSKVVEV 514 (1034)
T ss_pred HHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC--CCCccceEEEeCCCCCCcchhhhhhHHHHH
Confidence 4443333 236788888898876654443333333333333222 234445565555432 1233333
Q ss_pred HHHHHhh--cccceEEEEccHHHHHHHHHHhhhC----CC----eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 015129 271 CDLYETL--AITQSVIFVNTRRKVDWLTDKMRSR----DH----TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340 (413)
Q Consensus 271 ~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~ 340 (413)
..++.+. .+-++|-||++++.++.+....++. +. .+..+.|+.+.++|.++....-.|+..-+|+|++++
T Consensus 515 s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALE 594 (1034)
T KOG4150|consen 515 SHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALE 594 (1034)
T ss_pred HHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhh
Confidence 3333332 3459999999999888765544432 21 345688999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEE--EEeccCcHHHHHHHHHHhccccccCCchhhh
Q 015129 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAI--NFVTRDDERMLFDIQKFYNVVIEELPSNVAD 411 (413)
Q Consensus 341 ~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (413)
.|+|+..++.|++.+.|.|++.+.|..||+||.+++.-.+ ....+-|..++...+..++..++++.-++-|
T Consensus 595 LGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N 667 (1034)
T KOG4150|consen 595 LGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQN 667 (1034)
T ss_pred hccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEeccc
Confidence 9999999999999999999999999999999998875443 3444568888889899988888887655443
No 135
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=5.6e-20 Score=171.83 Aligned_cols=303 Identities=18% Similarity=0.208 Sum_probs=191.2
Q ss_pred hhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC---CCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEE--E
Q 015129 69 RGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC--V 143 (413)
Q Consensus 69 ~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~--~ 143 (413)
+.+++|.++--+||+|.||||||...--.+..+=... ...+-+=|.-|+|.-+..++.+...-...++-.|... .
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRf 342 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRF 342 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEe
Confidence 4666666777899999999999977433332221111 1133677788999877777776654333344444332 2
Q ss_pred cCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHH-------HHHhhCCC----
Q 015129 144 GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIY-------DIFQLLPA---- 212 (413)
Q Consensus 144 ~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~-------~~~~~~~~---- 212 (413)
.+.- .....|-++|.+.|++-+.+. +.+..++.||+||||.=. -+.+.+. .+......
T Consensus 343 d~ti--------~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERS--vnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 343 DGTI--------GEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERS--VNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred cccc--------CCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhcc--chHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 2211 133679999999998888764 456778999999999721 1222222 22222222
Q ss_pred --CceEEEEEeeCCHhHHHHHHHhcCCC-EEEEecCCcccccCeEEEEEEeccccch---HHHHHHHHHhhcccceEEEE
Q 015129 213 --KVQVGVFSATMPPEALEITRKFMNKP-VRILVKRDELTLEGIKQFYVNVEKEEWK---LETLCDLYETLAITQSVIFV 286 (413)
Q Consensus 213 --~~~~i~~SaT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~lif~ 286 (413)
..++|+||||+.-+.....++++..+ ..+.+....+. --.|+-.. ...++. ....+.+.+..+.+-+|||+
T Consensus 412 ~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfP--VsIHF~kr-T~~DYi~eAfrKtc~IH~kLP~G~ILVFv 488 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFP--VSIHFNKR-TPDDYIAEAFRKTCKIHKKLPPGGILVFV 488 (1172)
T ss_pred cCceeEEEEeeeEEecccccCceecCCCCceeeeecccCc--eEEEeccC-CCchHHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 56899999998644332223333322 22222222211 11222222 222333 33445566777889999999
Q ss_pred ccHHHHHHHHHHhhhCC---------------------------------------------------------------
Q 015129 287 NTRRKVDWLTDKMRSRD--------------------------------------------------------------- 303 (413)
Q Consensus 287 ~~~~~~~~l~~~L~~~~--------------------------------------------------------------- 303 (413)
...+++..+++.|+...
T Consensus 489 TGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~ 568 (1172)
T KOG0926|consen 489 TGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAF 568 (1172)
T ss_pred eChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhh
Confidence 99999999999987540
Q ss_pred ------------------------------------CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCC
Q 015129 304 ------------------------------------HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ 347 (413)
Q Consensus 304 ------------------------------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 347 (413)
.-+..+++-++...+.++++.-..|.--.+|+|+++++.+.||+
T Consensus 569 ~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPg 648 (1172)
T KOG0926|consen 569 NALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPG 648 (1172)
T ss_pred hccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCC
Confidence 00233344455666666666666677778999999999999999
Q ss_pred CcEEEEccCC------------------CChhhHHHhhhhccCCCCcceEEEEeccC
Q 015129 348 VSLVINYDLP------------------TQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 348 ~~~vi~~~~~------------------~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 386 (413)
+..||.-|.. .|-+.--||.||+||.| +|.||.+|+-.
T Consensus 649 IkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 649 IKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred eeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999975532 24566689999999997 59999998764
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.84 E-value=8.5e-19 Score=169.41 Aligned_cols=276 Identities=18% Similarity=0.214 Sum_probs=178.2
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|.-+.-.+.+| -+..+.||.|||+++.+++.-.... +..+-|++++..||.+-++++..+...+|+
T Consensus 73 lG~-r~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL~---G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNALT---GKGVHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred hCC-CCCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHhc---CCceEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 366 6888898776555555 4999999999999998877533333 348999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHcCC------CCCCcceEEEeccchHHh-ccC-----------
Q 015129 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQS------LRPDYIKMFVLDEADEML-SRG----------- 198 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~~------~~~~~~~~iV~DE~h~~~-~~~----------- 198 (413)
++.+..++.+........ .+||+++|...| +++++... .....+.+.|+||+|.++ +..
T Consensus 147 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~~ 224 (870)
T CHL00122 147 TVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSK 224 (870)
T ss_pred ceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCCc
Confidence 999988877765544443 479999998765 34443321 123447899999999644 100
Q ss_pred ---------------------cH---------------HHHHHHH-----------------hhC------C--------
Q 015129 199 ---------------------FK---------------DQIYDIF-----------------QLL------P-------- 211 (413)
Q Consensus 199 ---------------------~~---------------~~~~~~~-----------------~~~------~-------- 211 (413)
|. ..+..++ ..+ .
T Consensus 225 ~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~ 304 (870)
T CHL00122 225 TNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVR 304 (870)
T ss_pred cchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 00 0000000 000 0
Q ss_pred -----------------------------------------------------CCceEEEEEeeCCHhHHHHHHHhcCCC
Q 015129 212 -----------------------------------------------------AKVQVGVFSATMPPEALEITRKFMNKP 238 (413)
Q Consensus 212 -----------------------------------------------------~~~~~i~~SaT~~~~~~~~~~~~~~~~ 238 (413)
--.++.+||+|...+..+ +...++-.
T Consensus 305 dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~E-f~~iY~l~ 383 (870)
T CHL00122 305 NNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELE-FEKIYNLE 383 (870)
T ss_pred CCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHH-HHHHhCCC
Confidence 004677888988765444 44444444
Q ss_pred EEEEecCCcccccCeEEEEEEeccccchHHHHHHH-HHhh-cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCC-CH
Q 015129 239 VRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL-YETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDM-DQ 315 (413)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~ 315 (413)
+.......+.........+ ..+...+...+.+- .+.+ .+.|+||-+.|++..+.+++.|.+.|+...++++.. ..
T Consensus 384 vv~IPtnkp~~R~d~~d~v--~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~ 461 (870)
T CHL00122 384 VVCIPTHRPMLRKDLPDLI--YKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENV 461 (870)
T ss_pred EEECCCCCCccceeCCCeE--EeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccc
Confidence 4333222222212222122 22223344444443 3333 556999999999999999999999999999999873 22
Q ss_pred HHHHHHHHHHhcC-CCcEEEEcCCCCCCCCCC
Q 015129 316 NTRDIIMREFRSG-SSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 316 ~~r~~~~~~f~~~-~~~vli~t~~~~~G~d~~ 346 (413)
..-.+++. +.| .-.|.|||+++++|.||.
T Consensus 462 ~~EA~IIA--~AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 462 RRESEIVA--QAGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred hhHHHHHH--hcCCCCcEEEeccccCCCcCee
Confidence 22233444 234 345899999999999975
No 137
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.84 E-value=1.2e-17 Score=159.86 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=82.2
Q ss_pred HHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhc----CCCcEEEEcCCCCCCC
Q 015129 268 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS----GSSRVLITTDLLARGI 343 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vli~t~~~~~G~ 343 (413)
+.+..++.. .+++++|.+.|....+.+++.|...-.....+.|+.+ .+..++++|+. |.-.||++|..+.+|+
T Consensus 460 ~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 460 LSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred HHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 334444443 4578999999999999999999764323344445432 45668888887 4678999999999999
Q ss_pred CC--------C--CCcEEEEccCCCC-------------------------hhhHHHhhhhccCCCCc--ceEEEEeccC
Q 015129 344 DV--------Q--QVSLVINYDLPTQ-------------------------PENYLHRIGRSGRFGRK--GVAINFVTRD 386 (413)
Q Consensus 344 d~--------~--~~~~vi~~~~~~s-------------------------~~~~~Q~~GR~~R~g~~--~~~~~~~~~~ 386 (413)
|+ | .+++||+...|+. ...+.|.+||..|...+ --++.++++.
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 99 3 4899998877632 23468999999998765 3344444444
No 138
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.82 E-value=1.8e-17 Score=168.80 Aligned_cols=109 Identities=13% Similarity=0.196 Sum_probs=82.7
Q ss_pred cccceEEEEccHHHHHHHHHHhhhCCC--eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCC--CcEEEE
Q 015129 278 AITQSVIFVNTRRKVDWLTDKMRSRDH--TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ--VSLVIN 353 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~--~~~vi~ 353 (413)
.++++||+++|.+..+.+++.|..... ....+.-+++...|.++++.|++++-.||++|..+.+|+|+|+ +.+||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999975422 1333333444456789999999988889999999999999996 588998
Q ss_pred ccCCCC------------------------------hhhHHHhhhhccCCCCcceEEEEeccC
Q 015129 354 YDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 354 ~~~~~s------------------------------~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 386 (413)
.+.|.. ...+.|.+||+.|..++--++++++.+
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 887641 234589999999997664455555554
No 139
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.81 E-value=5.2e-19 Score=139.09 Aligned_cols=118 Identities=44% Similarity=0.721 Sum_probs=109.6
Q ss_pred chHHHHHHHHHhhc--ccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Q 015129 265 WKLETLCDLYETLA--ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 265 ~~~~~l~~~~~~~~--~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
.+.+.+..++.... ++++||||++...++.+.+.|.+.+..+..+||+++..+|..+++.|+++...+|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 57777777777653 6799999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEE
Q 015129 343 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 382 (413)
Q Consensus 343 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~ 382 (413)
+|+|.+++||+++++++...+.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887753
No 140
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=1.6e-19 Score=172.67 Aligned_cols=319 Identities=18% Similarity=0.171 Sum_probs=212.7
Q ss_pred CCCCCcHHHHhhhhhhhc----CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcc
Q 015129 59 GFEKPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~i~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~ 134 (413)
....++++|.+.++.+.+ +-+.|+...||.|||...+..+...+......+..+|+||+..|.. |..+|..|+..
T Consensus 391 ~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPS 469 (1157)
T KOG0386|consen 391 QGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPS 469 (1157)
T ss_pred cCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccccccc
Confidence 334899999999998765 4478999999999998887777766666665668999999999876 66778887653
Q ss_pred cCcEEEEEEcCcchHHH--HHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCC
Q 015129 135 LGVKVHACVGGTSVRED--QRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA 212 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~~--~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~ 212 (413)
+......|....... ......+.+|+++|++.+.+ ....+..-++.++||||.|++.+.. ..+...+.-.-.
T Consensus 470 --v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t~y~ 543 (1157)
T KOG0386|consen 470 --VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNTHYR 543 (1157)
T ss_pred --eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHHHhhcccc
Confidence 334444444332221 22234678999999998753 1111222225789999999986543 222222222212
Q ss_pred CceEEEEEeeCCHh----HHHHH---------------------------------------------------------
Q 015129 213 KVQVGVFSATMPPE----ALEIT--------------------------------------------------------- 231 (413)
Q Consensus 213 ~~~~i~~SaT~~~~----~~~~~--------------------------------------------------------- 231 (413)
....+++|+||-.+ +..++
T Consensus 544 ~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKk 623 (1157)
T KOG0386|consen 544 AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKK 623 (1157)
T ss_pred chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhH
Confidence 33355666776311 11110
Q ss_pred --------------------------------------------------------HHhcCCCEEEEecCCcccccCeEE
Q 015129 232 --------------------------------------------------------RKFMNKPVRILVKRDELTLEGIKQ 255 (413)
Q Consensus 232 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 255 (413)
+.+|.+|..+......+.+..
T Consensus 624 eVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~--- 700 (1157)
T KOG0386|consen 624 EVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHY--- 700 (1157)
T ss_pred HHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccccccc---
Confidence 001111100000000000000
Q ss_pred EEEEeccccchHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCC--C-
Q 015129 256 FYVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS--S- 330 (413)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~- 330 (413)
....+-...++.+.+..++-+. .++++|.||.......-+..+|.-+++.+..+.|.+...+|...++.|+.-. +
T Consensus 701 ~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf 780 (1157)
T KOG0386|consen 701 DIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYF 780 (1157)
T ss_pred ChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCcee
Confidence 0001112234666666666543 5679999999999999999999999999999999999999999999999643 3
Q ss_pred cEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCc
Q 015129 331 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 331 ~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 387 (413)
.+|++|.+.+.|+|+..++.||+++..|++....|+-.|++|.|+...+-++....-
T Consensus 781 ~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv 837 (1157)
T KOG0386|consen 781 IFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITV 837 (1157)
T ss_pred eeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehh
Confidence 366789999999999999999999999999999999999999998866666555543
No 141
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.80 E-value=1.3e-18 Score=156.81 Aligned_cols=282 Identities=18% Similarity=0.224 Sum_probs=187.5
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHc
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 157 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
+-++-+|||.||||.-++ +.+...+ +.+|.-|.+-||.++++.+.+. |+.+..++|......... ..
T Consensus 192 kIi~H~GPTNSGKTy~AL----qrl~~ak---sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--~~ 258 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRAL----QRLKSAK---SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--GN 258 (700)
T ss_pred eEEEEeCCCCCchhHHHH----HHHhhhc---cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--CC
Confidence 346779999999998753 3444334 7899999999999999999886 667777776544332211 12
Q ss_pred CCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCC-CCceEEEEEeeCCHhHHHHHHHhcC
Q 015129 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AKVQVGVFSATMPPEALEITRKFMN 236 (413)
Q Consensus 158 ~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~ 236 (413)
.++.+-||.|+.. -...+++.|+||++.+.+.+.+-.+.+.+--+. .... +.+- +....+++..+.
T Consensus 259 ~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiH---LCGe--psvldlV~~i~k 325 (700)
T KOG0953|consen 259 PAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIH---LCGE--PSVLDLVRKILK 325 (700)
T ss_pred cccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhh---ccCC--chHHHHHHHHHh
Confidence 4678888887652 123379999999999988776655554432221 1111 1222 222333333332
Q ss_pred ---CCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCe-eEEecCC
Q 015129 237 ---KPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGD 312 (413)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~-~~~~~~~ 312 (413)
+.+.+. .|..+.+ ....+.+..-++....+-+ |+|-|++....+.+.+++.|.. +++++|+
T Consensus 326 ~TGd~vev~-------------~YeRl~p-L~v~~~~~~sl~nlk~GDC-vV~FSkk~I~~~k~kIE~~g~~k~aVIYGs 390 (700)
T KOG0953|consen 326 MTGDDVEVR-------------EYERLSP-LVVEETALGSLSNLKPGDC-VVAFSKKDIFTVKKKIEKAGNHKCAVIYGS 390 (700)
T ss_pred hcCCeeEEE-------------eecccCc-ceehhhhhhhhccCCCCCe-EEEeehhhHHHHHHHHHHhcCcceEEEecC
Confidence 111111 1111111 1122233333444444444 4556788899999999988776 9999999
Q ss_pred CCHHHHHHHHHHHhc--CCCcEEEEcCCCCCCCCCCCCcEEEEccCC---------CChhhHHHhhhhccCCCC---cce
Q 015129 313 MDQNTRDIIMREFRS--GSSRVLITTDLLARGIDVQQVSLVINYDLP---------TQPENYLHRIGRSGRFGR---KGV 378 (413)
Q Consensus 313 ~~~~~r~~~~~~f~~--~~~~vli~t~~~~~G~d~~~~~~vi~~~~~---------~s~~~~~Q~~GR~~R~g~---~~~ 378 (413)
+++..|..--..|++ ++++|||||++++.|+|+ +++.||+++.. .+..+..|..||+||.|. .|.
T Consensus 391 LPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~ 469 (700)
T KOG0953|consen 391 LPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGE 469 (700)
T ss_pred CCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCce
Confidence 999999999999997 899999999999999999 79999988753 467889999999999874 266
Q ss_pred EEEEeccCcHHHHHHHHHHhccccccC
Q 015129 379 AINFVTRDDERMLFDIQKFYNVVIEEL 405 (413)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (413)
+.++. .+.+..+.+.++...+++
T Consensus 470 vTtl~----~eDL~~L~~~l~~p~epi 492 (700)
T KOG0953|consen 470 VTTLH----SEDLKLLKRILKRPVEPI 492 (700)
T ss_pred EEEee----HhhHHHHHHHHhCCchHH
Confidence 66654 445556666666555544
No 142
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.80 E-value=3.2e-18 Score=136.64 Aligned_cols=144 Identities=40% Similarity=0.561 Sum_probs=112.8
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHc
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 157 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
+++++.+|||+|||.+++..+.+..... ..++++|++|++.++.|+.+.+..+... +..+..+.+.............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcC
Confidence 4689999999999999888887766653 3349999999999999999999887765 6777777777665555555567
Q ss_pred CCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeC
Q 015129 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 223 (413)
Q Consensus 158 ~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 223 (413)
..+++++|++.+.............++++|+||+|.+....................+++++||||
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999999888776555566689999999999877664444333444456678899999997
No 143
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=2.8e-17 Score=158.72 Aligned_cols=276 Identities=17% Similarity=0.198 Sum_probs=178.7
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|.-.--.+.+|+ +..+.||-|||+++.+|+.-....++ .+-||+++.-||.+-++++..+...+|+
T Consensus 82 lG~-r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~Gk---gVhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGK---GVHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred hCC-CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCC---CeEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 355 78888887776666666 99999999999999887765544444 8999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHc------CCCCCCcceEEEeccchHHh-ccC-----------
Q 015129 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRR------QSLRPDYIKMFVLDEADEML-SRG----------- 198 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~------~~~~~~~~~~iV~DE~h~~~-~~~----------- 198 (413)
.+.+..++.+...... .-.+||+++|...| +++++. .......+.+.||||++.++ +..
T Consensus 156 tvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~~ 233 (939)
T PRK12902 156 SVGLIQQDMSPEERKK--NYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVE 233 (939)
T ss_pred eEEEECCCCChHHHHH--hcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCCc
Confidence 9999877666544433 34689999999876 333332 11223557899999999643 110
Q ss_pred ----cHHHHHHHHhhCCC--------------------------------------------------------------
Q 015129 199 ----FKDQIYDIFQLLPA-------------------------------------------------------------- 212 (413)
Q Consensus 199 ----~~~~~~~~~~~~~~-------------------------------------------------------------- 212 (413)
.......+...+..
T Consensus 234 ~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d 313 (939)
T PRK12902 234 RPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKD 313 (939)
T ss_pred cchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcC
Confidence 00000000000000
Q ss_pred ------------------------------------------------------------CceEEEEEeeCCHhHHHHHH
Q 015129 213 ------------------------------------------------------------KVQVGVFSATMPPEALEITR 232 (413)
Q Consensus 213 ------------------------------------------------------------~~~~i~~SaT~~~~~~~~~~ 232 (413)
-.++.+||+|...+..++ .
T Consensus 314 ~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef-~ 392 (939)
T PRK12902 314 VNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEF-E 392 (939)
T ss_pred CeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHH-H
Confidence 045667888876555443 3
Q ss_pred HhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHH-hh-cccceEEEEccHHHHHHHHHHhhhCCCeeEEec
Q 015129 233 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYE-TL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATH 310 (413)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~ 310 (413)
..++..+.......+.........++ .+...+...+.+-+. .+ .+.|+||-+.|++..+.+++.|.+.|+...+++
T Consensus 393 ~iY~l~Vv~IPTnkP~~R~d~~d~vy--~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLN 470 (939)
T PRK12902 393 KTYKLEVTVIPTNRPRRRQDWPDQVY--KTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLN 470 (939)
T ss_pred HHhCCcEEEcCCCCCeeeecCCCeEE--cCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheee
Confidence 34443333322222221111121222 222345555554443 33 567999999999999999999999999999999
Q ss_pred CCC-CHHHHHHHHHHHhcCC-CcEEEEcCCCCCCCCCC
Q 015129 311 GDM-DQNTRDIIMREFRSGS-SRVLITTDLLARGIDVQ 346 (413)
Q Consensus 311 ~~~-~~~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~ 346 (413)
+.. ..+.-.+++. +.|+ -.|-|||+++++|.||.
T Consensus 471 Ak~~~~~~EA~IIa--~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 471 AKPENVEREAEIVA--QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred CCCcchHhHHHHHH--hcCCCCcEEEeccCCCCCcCEe
Confidence 873 3222233444 2444 45889999999999975
No 144
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.77 E-value=1.3e-16 Score=142.24 Aligned_cols=121 Identities=17% Similarity=0.254 Sum_probs=100.1
Q ss_pred hHHHHHHHHH----hhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcC-CCcEE-EEcCCC
Q 015129 266 KLETLCDLYE----TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG-SSRVL-ITTDLL 339 (413)
Q Consensus 266 ~~~~l~~~~~----~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vl-i~t~~~ 339 (413)
++++|.+-+. +...-|.|||.......+.+.=.|...|..|..+.|+|++..|...++.|.++ +++|+ ++-.+.
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAG 700 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAG 700 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccC
Confidence 5555544332 22334789999999988888889999999999999999999999999999985 45555 455788
Q ss_pred CCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCc--ceEEEEeccC
Q 015129 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRD 386 (413)
Q Consensus 340 ~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~ 386 (413)
+..+|+..+++|+++|+.|+++.-.|+..|.+|.|+. -+++.|.-+.
T Consensus 701 GVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 701 GVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred ceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 9999999999999999999999999999999999975 4666666554
No 145
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.77 E-value=1.1e-18 Score=145.91 Aligned_cols=151 Identities=18% Similarity=0.188 Sum_probs=101.7
Q ss_pred CCcHHHHhhhhhhhc-------CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcc
Q 015129 62 KPSAIQQRGIVPFCK-------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~-------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~ 134 (413)
+|+++|.+++..+.+ ++++++.+|||||||.+++..+.+... +++|++|+..|+.|+.+.+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 589999999999884 589999999999999998765555433 9999999999999999999766432
Q ss_pred cCcEEEE-----------EE-cCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCC-----------CCCCcceEEEeccc
Q 015129 135 LGVKVHA-----------CV-GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS-----------LRPDYIKMFVLDEA 191 (413)
Q Consensus 135 ~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~-----------~~~~~~~~iV~DE~ 191 (413)
. ..... .. ................+++++|.+.+........ .....+++||+|||
T Consensus 77 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 77 K-YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp S-EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred h-hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 1 11100 00 0111111222234567899999999987765321 12234789999999
Q ss_pred hHHhccCcHHHHHHHHhhCCCCceEEEEEeeCC
Q 015129 192 DEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 224 (413)
Q Consensus 192 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 224 (413)
|+.....- ...+.. .....+++|||||.
T Consensus 156 H~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp GCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred hhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 98754441 334444 45677999999986
No 146
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.77 E-value=1.6e-18 Score=122.49 Aligned_cols=78 Identities=47% Similarity=0.814 Sum_probs=75.4
Q ss_pred HHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCC
Q 015129 297 DKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG 374 (413)
Q Consensus 297 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 374 (413)
+.|+..++.+..+||+++..+|..+++.|++++.++||||+++++|+|+|.+++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999986
No 147
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.76 E-value=4.4e-17 Score=150.81 Aligned_cols=121 Identities=21% Similarity=0.328 Sum_probs=105.0
Q ss_pred hHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCc-EEEEcCCCCCC
Q 015129 266 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR-VLITTDLLARG 342 (413)
Q Consensus 266 ~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~-vli~t~~~~~G 342 (413)
++..+..++.+. .+.++|+|+...+...-+.++|.-++.....+.|.....+|..++.+|+..++- .|++|.+.+.|
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccc
Confidence 455555555543 456999999999999999999999999999999999999999999999986665 56789999999
Q ss_pred CCCCCCcEEEEccCCCChhhHHHhhhhccCCCCc--ceEEEEeccC
Q 015129 343 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRD 386 (413)
Q Consensus 343 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~ 386 (413)
||+..++.||+|+..|++..=.|++.|++|.|+. -.+|.+++..
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred ccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 9999999999999999999999999999999986 4567777665
No 148
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.75 E-value=3.7e-15 Score=147.32 Aligned_cols=112 Identities=21% Similarity=0.347 Sum_probs=78.6
Q ss_pred HHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHh----cCCCcEEEEcCCCCCCCCC
Q 015129 270 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR----SGSSRVLITTDLLARGIDV 345 (413)
Q Consensus 270 l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~vli~t~~~~~G~d~ 345 (413)
+..++. ..+.++|+++|.+..+.+++.|......-....|. ..+..+++.|+ .++..||++|..+.+|+|+
T Consensus 527 i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~ 601 (697)
T PRK11747 527 LPELLE--KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDL 601 (697)
T ss_pred HHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccC
Confidence 334444 34568999999999999999987432122333443 24667776666 4677799999999999999
Q ss_pred CC--CcEEEEccCCCC------------------------------hhhHHHhhhhccCCCCcceEEEEeccC
Q 015129 346 QQ--VSLVINYDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 346 ~~--~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 386 (413)
|+ +++||+.+.|.. ...+.|.+||+.|...+--++++++..
T Consensus 602 pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 602 PGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred CCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 86 788998887641 124589999999986653344455554
No 149
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=1.7e-16 Score=147.03 Aligned_cols=109 Identities=18% Similarity=0.266 Sum_probs=91.1
Q ss_pred cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhc--CCCcEEE-EcCCCCCCCCCCCCcEEEEc
Q 015129 278 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS--GSSRVLI-TTDLLARGIDVQQVSLVINY 354 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vli-~t~~~~~G~d~~~~~~vi~~ 354 (413)
...+++|...=.....-+...+...|+....++|.....+|..+++.|+. |..+|++ +-.+.+.|+|+-+.+|+|.+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 44577777666666677888999999999999999999999999999985 4456554 55788999999999999999
Q ss_pred cCCCChhhHHHhhhhccCCCCcceE--EEEeccC
Q 015129 355 DLPTQPENYLHRIGRSGRFGRKGVA--INFVTRD 386 (413)
Q Consensus 355 ~~~~s~~~~~Q~~GR~~R~g~~~~~--~~~~~~~ 386 (413)
|..|+++--.|+..|..|.|+...+ +.|++.+
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~g 858 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKG 858 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecC
Confidence 9999999999999999999987544 4455554
No 150
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.74 E-value=7.2e-16 Score=153.55 Aligned_cols=112 Identities=15% Similarity=0.288 Sum_probs=80.8
Q ss_pred HHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCe-eEEecCCCCHHHHHHHHHHHhcCCC-cEEEEcCCCCCCCCCCC
Q 015129 270 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMDQNTRDIIMREFRSGSS-RVLITTDLLARGIDVQQ 347 (413)
Q Consensus 270 l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~-~vli~t~~~~~G~d~~~ 347 (413)
+..+++. .+++++||++|.+.++.+.+.+...... ....+|.. .+...++.|..+.- -+++++..+.+|+|+++
T Consensus 471 i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g 546 (654)
T COG1199 471 LREILKA-SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPG 546 (654)
T ss_pred HHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCC
Confidence 3334343 4459999999999999999999887653 33333433 34478888876544 89999999999999995
Q ss_pred --CcEEEEccCCC------------------------------ChhhHHHhhhhccCCCCcceEEEEecc
Q 015129 348 --VSLVINYDLPT------------------------------QPENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 348 --~~~vi~~~~~~------------------------------s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 385 (413)
+.+||+.+.|. .+..+.|.+||+.|..++.-++++++.
T Consensus 547 ~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 547 DALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred CCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 67888888764 235679999999997555334444444
No 151
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.73 E-value=3.3e-16 Score=153.70 Aligned_cols=325 Identities=17% Similarity=0.133 Sum_probs=192.8
Q ss_pred CCCcHHHHhhhhhhhc--------CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhh
Q 015129 61 EKPSAIQQRGIVPFCK--------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~--------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~ 132 (413)
..-..+|-+|+..+.. |-=++--|.||+|||++ -.-+++.+.....+.+..|..-.|+|-.|.-+.+++..
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL 485 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRL 485 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhc
Confidence 3456789999988764 33356689999999987 56666677777777799999999999999988888754
Q ss_pred cccCcEEEEEEcCcchHHHH-------------------------------------------HHHH--------cCCcE
Q 015129 133 DYLGVKVHACVGGTSVREDQ-------------------------------------------RILQ--------AGVHV 161 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~--------~~~~i 161 (413)
...+-...++.|+....+-. ..+. -...+
T Consensus 486 ~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv 565 (1110)
T TIGR02562 486 NLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPV 565 (1110)
T ss_pred CCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCe
Confidence 43333444444433221110 0000 02469
Q ss_pred EEEccHHHHHHHHc--CCC------CCCcceEEEeccchHHhccCcHHHHHHHHhhCC-CCceEEEEEeeCCHhHHHHHH
Q 015129 162 VVGTPGRVFDMLRR--QSL------RPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AKVQVGVFSATMPPEALEITR 232 (413)
Q Consensus 162 ii~T~~~l~~~~~~--~~~------~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~ 232 (413)
+|||++.++..... .+. .+. -+.||+||+|.+.... ...+.+++.... -..++++||||+++.....+.
T Consensus 566 ~V~TIDQlL~a~~~~r~~~~~l~ll~La-~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 566 LVCTIDHLIPATESHRGGHHIAPMLRLM-SSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred EEecHHHHHHHhhhcccchhHHHHHHhc-CCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 99999998776632 111 111 2579999999764443 233444443221 256799999999986655432
Q ss_pred H-----------hcCCC---EEEEe-cCCcc------------------------------cccCeEEEEEEecccc---
Q 015129 233 K-----------FMNKP---VRILV-KRDEL------------------------------TLEGIKQFYVNVEKEE--- 264 (413)
Q Consensus 233 ~-----------~~~~~---~~~~~-~~~~~------------------------------~~~~~~~~~~~~~~~~--- 264 (413)
. ..+.+ ..+.. -..+. .+..-.-.+..++...
T Consensus 644 ~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~ 723 (1110)
T TIGR02562 644 RAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPREN 723 (1110)
T ss_pred HHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccch
Confidence 2 22221 11110 00000 0011111122222211
Q ss_pred -chH--------HHHHHHHHhh------cccc---eEEEEccHHHHHHHHHHhhhC------CCeeEEecCCCCHHHHHH
Q 015129 265 -WKL--------ETLCDLYETL------AITQ---SVIFVNTRRKVDWLTDKMRSR------DHTVSATHGDMDQNTRDI 320 (413)
Q Consensus 265 -~~~--------~~l~~~~~~~------~~~~---~lif~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~ 320 (413)
... +.+..+...+ .+++ .+|-+++++.+-.+++.|-.. .+.+++||+..+...|..
T Consensus 724 ~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~ 803 (1110)
T TIGR02562 724 ESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSY 803 (1110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHH
Confidence 111 1222222222 1122 377777776666666666443 245888999998888877
Q ss_pred HHHHH----------------------hc----CCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCC
Q 015129 321 IMREF----------------------RS----GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG 374 (413)
Q Consensus 321 ~~~~f----------------------~~----~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 374 (413)
+++.. .+ +...|+|+|++++.|+|+ +.+++| ..+.++...+|++||+.|.|
T Consensus 804 ~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 804 IERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred HHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhcccccc
Confidence 66553 12 356799999999999998 456655 34567899999999999987
Q ss_pred Cc--ceEEEEeccCcHHHH
Q 015129 375 RK--GVAINFVTRDDERML 391 (413)
Q Consensus 375 ~~--~~~~~~~~~~~~~~~ 391 (413)
.. +..-+++...+.+.+
T Consensus 881 ~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 881 LEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred cCCCCCCcEEEeHhHHHHh
Confidence 53 334444455555554
No 152
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.72 E-value=1.5e-15 Score=147.28 Aligned_cols=121 Identities=20% Similarity=0.278 Sum_probs=104.8
Q ss_pred hHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEcCCCCC
Q 015129 266 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS--SRVLITTDLLAR 341 (413)
Q Consensus 266 ~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vli~t~~~~~ 341 (413)
|++.|.-++.+. .+.++|||+......+.+...|.-+|+-+..+.|....++|...+++|+.+. ...|++|...+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 566666666543 5568999999999999999999999999999999999999999999999865 357788999999
Q ss_pred CCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcc--eEEEEeccC
Q 015129 342 GIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG--VAINFVTRD 386 (413)
Q Consensus 342 G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~--~~~~~~~~~ 386 (413)
|||+.+++.||+||..|++..=.|+-.|++|.|+.- ..|.+++..
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 999999999999999999999999999999999864 455566654
No 153
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.72 E-value=6.3e-16 Score=151.35 Aligned_cols=310 Identities=15% Similarity=0.191 Sum_probs=205.5
Q ss_pred CCcHHHHhhhhhhhc-CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHH-HhhcccCcEE
Q 015129 62 KPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMR-ALGDYLGVKV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~-~~~~~~~~~~ 139 (413)
...+.|.+.++.+.+ +.++++.+|+|||||.++.++++. .....+++++.|.-+.+..+++.|. ++....|..+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~ 1218 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRI 1218 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCceE
Confidence 347889999988776 678999999999999999888776 3334599999999998888777664 4555568888
Q ss_pred EEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcH------HHHHHHHhhCCCC
Q 015129 140 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK------DQIYDIFQLLPAK 213 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~------~~~~~~~~~~~~~ 213 (413)
..++|....... +....+++|+||+++..+ . ....+++.|+||.|.+.+.. + -.+..+...+.++
T Consensus 1219 ~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r~ia~q~~k~ 1289 (1674)
T KOG0951|consen 1219 VKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVY-GAVYEVICSMRYIASQLEKK 1289 (1674)
T ss_pred EecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccC-CceEEEEeeHHHHHHHHHhh
Confidence 888887764433 234569999999999654 2 44558999999999877322 2 1256666677778
Q ss_pred ceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEecccc--ch----HHHHHHHHHhh--cccceEEE
Q 015129 214 VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEE--WK----LETLCDLYETL--AITQSVIF 285 (413)
Q Consensus 214 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~l~~~~~~~--~~~~~lif 285 (413)
.+++++|....+. .++ -++.....+..... .++......+..+.... .. .+-....+.++ .+++.+||
T Consensus 1290 ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~-~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf 1365 (1674)
T KOG0951|consen 1290 IRVVALSSSLANA-RDL--IGASSSGVFNFSPS-VRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVF 1365 (1674)
T ss_pred eeEEEeehhhccc-hhh--ccccccceeecCcc-cCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEE
Confidence 8899998887532 222 11222222222222 22222222222222211 11 11112222222 45799999
Q ss_pred EccHHHHHHHHHHhhhC----------------------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCC
Q 015129 286 VNTRRKVDWLTDKMRSR----------------------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 343 (413)
Q Consensus 286 ~~~~~~~~~l~~~L~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 343 (413)
+++++.+..++..|-.. .....+-|.+++..+..-+-..|..|.+.|+|...- ..|+
T Consensus 1366 ~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~ 1444 (1674)
T KOG0951|consen 1366 LPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGT 1444 (1674)
T ss_pred eccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccc
Confidence 99999988765444211 122223388899999888899999999999998876 7777
Q ss_pred CCCCCcEEEEcc-----------CCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHH
Q 015129 344 DVQQVSLVINYD-----------LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 393 (413)
Q Consensus 344 d~~~~~~vi~~~-----------~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~ 393 (413)
-... +.|+..| .+.+.+...|+.|++.|. |+|+++....+..++++
T Consensus 1445 ~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1445 KLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred cccc-eEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHH
Confidence 7643 3344332 244678999999999995 67888777776666554
No 154
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=6.8e-16 Score=150.86 Aligned_cols=122 Identities=18% Similarity=0.241 Sum_probs=95.8
Q ss_pred chHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Q 015129 265 WKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 265 ~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
.+..++.+-+... .+.|+||-+.|++..+.+++.|...|+...++++.....+-.-+-+.-+ .-.|-|||+++++|
T Consensus 612 eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMAGRG 689 (1112)
T PRK12901 612 EKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMAGRG 689 (1112)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCcCCC
Confidence 4555655544432 5669999999999999999999999999999988755444333333222 33588999999999
Q ss_pred CCCC--------CCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcH
Q 015129 343 IDVQ--------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 388 (413)
Q Consensus 343 ~d~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 388 (413)
.||. +-=+||-...+.|..--.|..||+||.|.+|.+..|++-.|.
T Consensus 690 TDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 690 TDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred cCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 9987 346778888899999999999999999999998888877654
No 155
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=1.3e-14 Score=144.60 Aligned_cols=74 Identities=24% Similarity=0.231 Sum_probs=62.4
Q ss_pred CCCCCCcHHHHhhhhhhh----cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 58 YGFEKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
+++..+||.|.+.+..+. +++++++.+|||+|||++.+.+++..........+++|.+.|..-..|..+++++.
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 567778999998777654 48999999999999999999999887665444459999999999999999999884
No 156
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.68 E-value=2e-14 Score=145.78 Aligned_cols=313 Identities=16% Similarity=0.182 Sum_probs=177.2
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 156 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
++..+|+.-+|||||++++..+-. +......+++++||.++.|-.|+.+.+..+........ ...+.....+.+.
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~~-l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~ 347 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARL-LLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLE 347 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHHH-HHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHh
Confidence 357999999999999997655544 33336667999999999999999999999865432221 3344444455555
Q ss_pred c-CCcEEEEccHHHHHHHHcCC-C-CCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHH-HH
Q 015129 157 A-GVHVVVGTPGRVFDMLRRQS-L-RPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEI-TR 232 (413)
Q Consensus 157 ~-~~~iii~T~~~l~~~~~~~~-~-~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~-~~ 232 (413)
. ...|+|||.++|........ . ....--+||+||||+- .++.....+...++ +...+++|+||....... ..
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~-~a~~~gFTGTPi~~~d~~tt~ 423 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALK-KAIFIGFTGTPIFKEDKDTTK 423 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhc-cceEEEeeCCccccccccchh
Confidence 3 35899999999987775531 1 1122247899999983 34444455555554 467999999986322111 12
Q ss_pred HhcCCCEEEEecCCcccccCeEEEEEEec-c-------------------------------------------ccchHH
Q 015129 233 KFMNKPVRILVKRDELTLEGIKQFYVNVE-K-------------------------------------------EEWKLE 268 (413)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------------------------------~~~~~~ 268 (413)
...+................+-..++... . ......
T Consensus 424 ~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~ 503 (962)
T COG0610 424 DVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIR 503 (962)
T ss_pred hhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHH
Confidence 22233222222111111111101110000 0 000011
Q ss_pred HHHHHH----H-hhcccceEEEEccHHHHHHHHHHhhhCCCe----------eEEe-------------cCCCCHHHHHH
Q 015129 269 TLCDLY----E-TLAITQSVIFVNTRRKVDWLTDKMRSRDHT----------VSAT-------------HGDMDQNTRDI 320 (413)
Q Consensus 269 ~l~~~~----~-~~~~~~~lif~~~~~~~~~l~~~L~~~~~~----------~~~~-------------~~~~~~~~r~~ 320 (413)
...++. + .....++++.+.++..+..+.+........ +..+ |.. ....+..
T Consensus 504 ~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~ 582 (962)
T COG0610 504 AAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKDEKKD 582 (962)
T ss_pred HHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHHHHhh
Confidence 111111 1 223357888888888555444443322000 0000 111 1222233
Q ss_pred HHHH--HhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCC--C-Cc-ceEEEEeccCcHHHHHHH
Q 015129 321 IMRE--FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF--G-RK-GVAINFVTRDDERMLFDI 394 (413)
Q Consensus 321 ~~~~--f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~--g-~~-~~~~~~~~~~~~~~~~~~ 394 (413)
.... ....++++||.++++-+|+|.|.++.+.. |-|.-.-.++|++.|+.|. + ++ |.++.|.. -.......+
T Consensus 583 ~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g-l~e~l~~Al 660 (962)
T COG0610 583 LIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG-LKEALKKAL 660 (962)
T ss_pred hhhhhcCcCCCCCEEEEEccccccCCccccceEEe-ccccccchHHHHHHHhccCCCCCCCCcEEEECcc-hHHHHHHHH
Confidence 4444 34568899999999999999998888774 5557778999999999995 3 22 44444433 333444444
Q ss_pred HHHhccc
Q 015129 395 QKFYNVV 401 (413)
Q Consensus 395 ~~~~~~~ 401 (413)
..+.+..
T Consensus 661 ~~Y~~~~ 667 (962)
T COG0610 661 KLYSNEG 667 (962)
T ss_pred HHhhccc
Confidence 4444444
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.66 E-value=1.2e-14 Score=141.20 Aligned_cols=137 Identities=19% Similarity=0.198 Sum_probs=98.1
Q ss_pred EEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHH----HHHHH
Q 015129 81 IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED----QRILQ 156 (413)
Q Consensus 81 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 156 (413)
+..+.+|||||.+|+-.+...+..++ .+||++|...|..|+.+.+++... +..+..++++.+..+. .....
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk---~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGR---GALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCC---eEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 33444699999999888887777665 899999999999999999998653 2567788887775543 33344
Q ss_pred cCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC-----c-HHHHHHHHhhCCCCceEEEEEeeCCHhHHHH
Q 015129 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-----F-KDQIYDIFQLLPAKVQVGVFSATMPPEALEI 230 (413)
Q Consensus 157 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~-----~-~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 230 (413)
....|+|+|-..++ ..+.++++||+||=|.-.... | ...+...... ..+..+|+.||||+-+....
T Consensus 239 G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 239 GQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH-QHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred CCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-HcCCcEEEECCCCCHHHHHH
Confidence 56789999976654 356678999999999644221 1 2333333333 34777999999998765544
No 158
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.64 E-value=1.8e-14 Score=137.54 Aligned_cols=121 Identities=20% Similarity=0.252 Sum_probs=97.6
Q ss_pred hHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhC----------------------CCeeEEecCCCCHHHHHHH
Q 015129 266 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSR----------------------DHTVSATHGDMDQNTRDII 321 (413)
Q Consensus 266 ~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~----------------------~~~~~~~~~~~~~~~r~~~ 321 (413)
++-.|.++++.. -+.++|||..|......+...|... |..+..+.|......|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 334455566543 5569999999999888887777531 5678889999999999999
Q ss_pred HHHHhcC-CC---cEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEE--EEeccC
Q 015129 322 MREFRSG-SS---RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAI--NFVTRD 386 (413)
Q Consensus 322 ~~~f~~~-~~---~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~--~~~~~~ 386 (413)
.+.|+.- +. -.||+|.+.+.|+|+-.++.||++|..|++.-=.|.+=|+.|.|+..-|| .|+...
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqG 1277 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQG 1277 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcc
Confidence 9999863 22 27899999999999999999999999999999999999999999875554 444443
No 159
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.64 E-value=5e-13 Score=122.05 Aligned_cols=292 Identities=15% Similarity=0.229 Sum_probs=204.0
Q ss_pred ccCCCceeEEEEcCcHHHHHHHHHHHHHhhccc-------------CcE------EEEEEcCcchHHHHH-HHH------
Q 015129 103 DYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-------------GVK------VHACVGGTSVREDQR-ILQ------ 156 (413)
Q Consensus 103 ~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~-------------~~~------~~~~~~~~~~~~~~~-~~~------ 156 (413)
.++...++|||++|++..|.++.+.+.++.... +.. ...-......+.+.. .+.
T Consensus 32 DQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~ 111 (442)
T PF06862_consen 32 DQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDC 111 (442)
T ss_pred ccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccce
Confidence 455667899999999999999999887765441 100 000000011111211 111
Q ss_pred ------------------cCCcEEEEccHHHHHHHHc------CCCCCCcceEEEeccchHHhccCcHHHHHHHHh---h
Q 015129 157 ------------------AGVHVVVGTPGRVFDMLRR------QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ---L 209 (413)
Q Consensus 157 ------------------~~~~iii~T~~~l~~~~~~------~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~---~ 209 (413)
-.+|||||+|=.|...+.. ....++.+.++|+|.+|.+.-.+| ..+..++. .
T Consensus 112 FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW-~Hv~~v~~~lN~ 190 (442)
T PF06862_consen 112 FRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNW-EHVLHVFEHLNL 190 (442)
T ss_pred EEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhH-HHHHHHHHHhcc
Confidence 1579999999999877763 334477799999999998775553 33333333 3
Q ss_pred CCC---------------------CceEEEEEeeCCHhHHHHHHHhcCCCE-EEEe--cCC-----cccccCeEEEEEEe
Q 015129 210 LPA---------------------KVQVGVFSATMPPEALEITRKFMNKPV-RILV--KRD-----ELTLEGIKQFYVNV 260 (413)
Q Consensus 210 ~~~---------------------~~~~i~~SaT~~~~~~~~~~~~~~~~~-~~~~--~~~-----~~~~~~~~~~~~~~ 260 (413)
.|. -.|.|++|+...++...+....+.+.. .+.. ... ......+.|.+...
T Consensus 191 ~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~ 270 (442)
T PF06862_consen 191 QPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRF 270 (442)
T ss_pred CCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEe
Confidence 332 269999999999999998888555432 2221 111 12335667777665
Q ss_pred cccc------chHHHH----HHHHH-hhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCC
Q 015129 261 EKEE------WKLETL----CDLYE-TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS 329 (413)
Q Consensus 261 ~~~~------~~~~~l----~~~~~-~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 329 (413)
+... .+.+.. ...+. ....+.+|||++|.-+--++...|+..+.....++...+..+..++-..|.+|+
T Consensus 271 ~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~ 350 (442)
T PF06862_consen 271 DCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGR 350 (442)
T ss_pred cCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCC
Confidence 4322 222222 22233 445579999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcC--CCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCC------cceEEEEeccCcHHHHHHHH
Q 015129 330 SRVLITTD--LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR------KGVAINFVTRDDERMLFDIQ 395 (413)
Q Consensus 330 ~~vli~t~--~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~------~~~~~~~~~~~~~~~~~~~~ 395 (413)
.++|+.|. -.-.-..+.++++||+|++|..+.-|...++-.+.... ...|.++++..|.-.++.+.
T Consensus 351 ~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 351 KPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred ceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 99999998 45677789999999999999999888777755544332 47899999999988776653
No 160
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.64 E-value=1.1e-15 Score=109.41 Aligned_cols=81 Identities=41% Similarity=0.749 Sum_probs=76.9
Q ss_pred HHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCC
Q 015129 294 WLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 373 (413)
Q Consensus 294 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (413)
.+++.|+..+..+..+||+++..+|..+++.|+.+...+|++|+++++|+|++.+++||++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 015129 374 G 374 (413)
Q Consensus 374 g 374 (413)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.63 E-value=1.1e-13 Score=132.84 Aligned_cols=290 Identities=13% Similarity=0.131 Sum_probs=183.4
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHc
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 157 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
.-.++.+|+|||||.+..-++...+. .++.++|++..+++|+.+....++...-. ++....-.++.. ....
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~--~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~------i~~~ 120 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALK--NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYI------IDGR 120 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhcc--CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeecccccc------cccc
Confidence 34589999999999887666655443 23349999999999999999999874211 222111111111 0012
Q ss_pred CCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHH-------HHHHhhCCCCceEEEEEeeCCHhHHHH
Q 015129 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI-------YDIFQLLPAKVQVGVFSATMPPEALEI 230 (413)
Q Consensus 158 ~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~-------~~~~~~~~~~~~~i~~SaT~~~~~~~~ 230 (413)
..+-+++..++|.+... ..+.++++||+||+-...+.-+...+ ..+...+.....+|++-|++....-++
T Consensus 121 ~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdF 197 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDF 197 (824)
T ss_pred ccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHH
Confidence 35778888888865532 24556899999999987765443332 234445556778999999999999898
Q ss_pred HHHhcCCCE-EEEecCC-cccccCeEEEEEE---------------------------------eccccchHHHHHHHHH
Q 015129 231 TRKFMNKPV-RILVKRD-ELTLEGIKQFYVN---------------------------------VEKEEWKLETLCDLYE 275 (413)
Q Consensus 231 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~~ 275 (413)
+..+.+... .+..... .....+-...+.. .........+...+..
T Consensus 198 l~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~ 277 (824)
T PF02399_consen 198 LASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLA 277 (824)
T ss_pred HHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHH
Confidence 888765432 2222110 0000000000000 0000112344445554
Q ss_pred hh-cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCC--CcEEE
Q 015129 276 TL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ--VSLVI 352 (413)
Q Consensus 276 ~~-~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~--~~~vi 352 (413)
+. .++++.||+.+...++.+++..+..+..+..+++..+..+ + + .-++++|++-|+++..|+++.. .+-|+
T Consensus 278 ~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~--~W~~~~VviYT~~itvG~Sf~~~HF~~~f 351 (824)
T PF02399_consen 278 RLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-E--SWKKYDVVIYTPVITVGLSFEEKHFDSMF 351 (824)
T ss_pred HHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-c--cccceeEEEEeceEEEEeccchhhceEEE
Confidence 44 4567889999999999888888888889999988765542 2 1 2468999999999999999864 34454
Q ss_pred EccCC----CChhhHHHhhhhccCCCCcceEEEEeccC
Q 015129 353 NYDLP----TQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 353 ~~~~~----~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 386 (413)
-|--| .++....|++||+-.. .....+++++..
T Consensus 352 ~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 352 AYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred EEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 44222 3455689999999444 446677777665
No 162
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.60 E-value=2.6e-13 Score=140.69 Aligned_cols=322 Identities=20% Similarity=0.204 Sum_probs=207.7
Q ss_pred CCCcHHHHhhhhhhhc-----CCcEEEeCCCCCcchHHhHHHHHHccccCCC-ceeEEEEcCcHHHHHHHHHHHHHhhcc
Q 015129 61 EKPSAIQQRGIVPFCK-----GLDVIQQAQSGTGKTATFCSGILQQLDYGLV-QCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~-----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~liv~P~~~l~~q~~~~~~~~~~~ 134 (413)
..++++|.+.++.+.. +.+.++..++|.|||+..+..+......... .+.++++||+ +++.+|.+++.++...
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 4789999999977652 6778899999999998877666553333222 3589999996 5577788888888765
Q ss_pred cCcEEEEEEcCcch----HHHH-HHHHc----CCcEEEEccHHHHHHH-HcCCCCCCcceEEEeccchHHhccCcHHHHH
Q 015129 135 LGVKVHACVGGTSV----REDQ-RILQA----GVHVVVGTPGRVFDML-RRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 204 (413)
Q Consensus 135 ~~~~~~~~~~~~~~----~~~~-~~~~~----~~~iii~T~~~l~~~~-~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~ 204 (413)
... +...+|.... .... ..... ..+++++|++.+.... ....+....++.+|+||+|.+.+.. .....
T Consensus 416 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s~~~~ 493 (866)
T COG0553 416 LRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-SSEGK 493 (866)
T ss_pred ccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-hHHHH
Confidence 443 5666665541 2222 22222 1789999999987632 1222334447899999999976554 22222
Q ss_pred HHHhhCCCCceEEEEEeeCCH-hHHH---HHH-Hhc---------------CCCEEEEec--------------------
Q 015129 205 DIFQLLPAKVQVGVFSATMPP-EALE---ITR-KFM---------------NKPVRILVK-------------------- 244 (413)
Q Consensus 205 ~~~~~~~~~~~~i~~SaT~~~-~~~~---~~~-~~~---------------~~~~~~~~~-------------------- 244 (413)
.+. .+.... .+.+|+||-. .+.+ ++. ..+ ..+......
T Consensus 494 ~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 571 (866)
T COG0553 494 ALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSP 571 (866)
T ss_pred HHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Confidence 222 222222 3566666621 1111 000 000 000000000
Q ss_pred ------CCc--c----------------------------c-------------ccC----------------------e
Q 015129 245 ------RDE--L----------------------------T-------------LEG----------------------I 253 (413)
Q Consensus 245 ------~~~--~----------------------------~-------------~~~----------------------~ 253 (413)
... . . ... +
T Consensus 572 f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~ 651 (866)
T COG0553 572 FILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQI 651 (866)
T ss_pred HhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHh
Confidence 000 0 0 000 0
Q ss_pred E---EEEEEe--c-----------------------ccc-chHHHHHHHH-H--hhccc--ceEEEEccHHHHHHHHHHh
Q 015129 254 K---QFYVNV--E-----------------------KEE-WKLETLCDLY-E--TLAIT--QSVIFVNTRRKVDWLTDKM 299 (413)
Q Consensus 254 ~---~~~~~~--~-----------------------~~~-~~~~~l~~~~-~--~~~~~--~~lif~~~~~~~~~l~~~L 299 (413)
. ..+... . ... .+...+.+++ . ...+. ++++|++.......+...+
T Consensus 652 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l 731 (866)
T COG0553 652 CNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYL 731 (866)
T ss_pred ccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHH
Confidence 0 000000 0 001 4566666666 2 22444 8999999999999999999
Q ss_pred hhCCCeeEEecCCCCHHHHHHHHHHHhcC--CCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcc
Q 015129 300 RSRDHTVSATHGDMDQNTRDIIMREFRSG--SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG 377 (413)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~ 377 (413)
+..+..+..++|.++...|...++.|+++ ..-+++++.+.+.|+|+..+++||++++.|++....|++.|++|.|+..
T Consensus 732 ~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~ 811 (866)
T COG0553 732 KALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKR 811 (866)
T ss_pred HhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcc
Confidence 99998899999999999999999999986 3345667789999999999999999999999999999999999999875
Q ss_pred --eEEEEeccCc
Q 015129 378 --VAINFVTRDD 387 (413)
Q Consensus 378 --~~~~~~~~~~ 387 (413)
.++.+.+.+.
T Consensus 812 ~v~v~r~i~~~t 823 (866)
T COG0553 812 PVKVYRLITRGT 823 (866)
T ss_pred eeEEEEeecCCc
Confidence 4555666553
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.52 E-value=1e-13 Score=105.37 Aligned_cols=137 Identities=21% Similarity=0.220 Sum_probs=80.8
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
+|+-.++...+|+|||.-.+..++......+ .++||+.||+.++.++.+.++.. +..+. . ..... ..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~--~rvLvL~PTRvva~em~~aL~~~----~~~~~--t-~~~~~----~~ 69 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRR--LRVLVLAPTRVVAEEMYEALKGL----PVRFH--T-NARMR----TH 69 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT----EEEEESSHHHHHHHHHHTTTS----SEEEE--S-TTSS-------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHcc--CeEEEecccHHHHHHHHHHHhcC----CcccC--c-eeeec----cc
Confidence 4666789999999999876665555433322 29999999999999888877643 22221 1 11101 11
Q ss_pred HcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhC-CCCceEEEEEeeCCHhH
Q 015129 156 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVFSATMPPEA 227 (413)
Q Consensus 156 ~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~ 227 (413)
..+.-|-++|+..+...+.+ .....++++||+||||.. |.........+.... .....+|+|||||+...
T Consensus 70 ~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 24567889999998887766 566788999999999964 222111111121111 12357999999998643
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.49 E-value=1.4e-13 Score=124.45 Aligned_cols=140 Identities=17% Similarity=0.094 Sum_probs=87.3
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCc--eeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ--CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 154 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~--~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
.+.+++..++|+|||..++..+.......... ..+||+||. .+..+|..++.++......++....|..........
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~ 103 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKN 103 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSS
T ss_pred CCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccccc
Confidence 46889999999999988766555333222211 259999999 778999999999986556677776666512222222
Q ss_pred HHcCCcEEEEccHHHH--------HHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCH
Q 015129 155 LQAGVHVVVGTPGRVF--------DMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPP 225 (413)
Q Consensus 155 ~~~~~~iii~T~~~l~--------~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 225 (413)
.....+++|+|++.+. ..+.. -++++||+||+|.+.+.. ......+.. +. ...++++||||-.
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~~k~~~-s~~~~~l~~-l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHRLKNKD-SKRYKALRK-LR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGGGTTTT-SHHHHHHHC-CC-ECEEEEE-SS-SS
T ss_pred ccccceeeecccccccccccccccccccc-----ccceeEEEeccccccccc-ccccccccc-cc-cceEEeecccccc
Confidence 2346789999999988 22222 238999999999985443 333444433 54 5668889999864
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.41 E-value=6.7e-12 Score=121.56 Aligned_cols=313 Identities=21% Similarity=0.254 Sum_probs=190.3
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEE
Q 015129 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
++++.|.-.--. -...-+..+-||-|||+++.+|+.-....+ ..+.+++..--|+..-.+++..+...+|+.+..
T Consensus 80 ~~~dVQliG~i~--lh~g~iaEM~TGEGKTL~atlp~ylnaL~g---kgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~ 154 (822)
T COG0653 80 RHFDVQLLGGIV--LHLGDIAEMRTGEGKTLVATLPAYLNALAG---KGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGV 154 (822)
T ss_pred ChhhHHHhhhhh--hcCCceeeeecCCchHHHHHHHHHHHhcCC---CCcEEeeehHHhhhhCHHHHHHHHHHcCCceee
Confidence 455555544433 344459999999999999887775433333 378888988899999999999999999999999
Q ss_pred EEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHc------CCCCCCcceEEEeccchHHh-c---------c---C---
Q 015129 142 CVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRR------QSLRPDYIKMFVLDEADEML-S---------R---G--- 198 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~------~~~~~~~~~~iV~DE~h~~~-~---------~---~--- 198 (413)
...+.......... .+||..+|..-| ++.++. .......+.+.|+||++.+. + . .
T Consensus 155 ~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~ 232 (822)
T COG0653 155 ILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSE 232 (822)
T ss_pred ccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCch
Confidence 88888766555544 379999998765 223321 11122346788888888643 1 0 0
Q ss_pred cHHHHHHHHhhCCC--------C---------------------------------------------------------
Q 015129 199 FKDQIYDIFQLLPA--------K--------------------------------------------------------- 213 (413)
Q Consensus 199 ~~~~~~~~~~~~~~--------~--------------------------------------------------------- 213 (413)
....+..+...+.. .
T Consensus 233 ~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~e 312 (822)
T COG0653 233 LYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGE 312 (822)
T ss_pred HHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCe
Confidence 01111111111100 0
Q ss_pred ----------------------------------------------------ceEEEEEeeCCHhHHHHHHHhcCCCEEE
Q 015129 214 ----------------------------------------------------VQVGVFSATMPPEALEITRKFMNKPVRI 241 (413)
Q Consensus 214 ----------------------------------------------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~ 241 (413)
.++.+||+|...+..++..-|....+.+
T Consensus 313 v~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~i 392 (822)
T COG0653 313 VVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVI 392 (822)
T ss_pred EEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeec
Confidence 2344455554443333333222222222
Q ss_pred EecCCcccccCeEEEEEEeccccchHHHHHHHHHh-h-cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHH
Q 015129 242 LVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET-L-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRD 319 (413)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 319 (413)
+......+.+.-... ..+...+..++.+.+.. + .+.|+||-+.+.+..+.+.+.|.+.|++..+++..-...+-+
T Consensus 393 PTnrp~~R~D~~D~v---y~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~ 469 (822)
T COG0653 393 PTNRPIIRLDEPDLV---YKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAE 469 (822)
T ss_pred cCCCcccCCCCcccc---ccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHH
Confidence 222222211111111 12223455555554443 3 567999999999999999999999999999998876644433
Q ss_pred HHHHHHhcCCC-cEEEEcCCCCCCCCCCCCcE-----------EEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCc
Q 015129 320 IIMREFRSGSS-RVLITTDLLARGIDVQQVSL-----------VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 320 ~~~~~f~~~~~-~vli~t~~~~~G~d~~~~~~-----------vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 387 (413)
.+-+ .|.. -|-|||+++++|-|+.--.. ||-.....|..-=-|..||+||.|.+|..-.+++-.|
T Consensus 470 Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 470 IIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred HHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 3333 3333 47799999999999874332 2222222233333488999999999998777766554
No 166
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=6.5e-11 Score=107.19 Aligned_cols=334 Identities=17% Similarity=0.233 Sum_probs=209.7
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEe-CCCCCcc--hHHhHHHHHHccc----------------------------cCCCce
Q 015129 61 EKPSAIQQRGIVPFCKGLDVIQQ-AQSGTGK--TATFCSGILQQLD----------------------------YGLVQC 109 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~~~~li~-~~tGsGK--T~~~~~~~~~~~~----------------------------~~~~~~ 109 (413)
..+++.|.+.+..+.+.++++.. ...+.|+ +.+|++-+++.+. ++...+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 57999999999999998887643 3334555 3556666666651 123457
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhcccCc-E--E---E-------------------------EEEcCcchH---------
Q 015129 110 QALVLAPTRELAQQIEKVMRALGDYLGV-K--V---H-------------------------ACVGGTSVR--------- 149 (413)
Q Consensus 110 ~~liv~P~~~l~~q~~~~~~~~~~~~~~-~--~---~-------------------------~~~~~~~~~--------- 149 (413)
+||||||+++.|-.+.+.+..+....+- + | . .+.|..+..
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999999988877433211 0 0 0 011111100
Q ss_pred HHHHHH--HcCCcEEEEccHHHHHHHHcCC------CCCCcceEEEeccchHHhccCcHHHHHHHHhhC---CCC-----
Q 015129 150 EDQRIL--QAGVHVVVGTPGRVFDMLRRQS------LRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL---PAK----- 213 (413)
Q Consensus 150 ~~~~~~--~~~~~iii~T~~~l~~~~~~~~------~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~---~~~----- 213 (413)
...++. ....||+||+|=.|...+.+.+ -.++.+.++|+|.+|.+...+|. .+..++..+ |..
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccCCC
Confidence 000111 1257999999999977776322 23566789999999998877644 333333332 221
Q ss_pred ----------------ceEEEEEeeCCHhHHHHHHHhcCCCE-EEEecCCcc--ccc----CeEEEEEEe------cccc
Q 015129 214 ----------------VQVGVFSATMPPEALEITRKFMNKPV-RILVKRDEL--TLE----GIKQFYVNV------EKEE 264 (413)
Q Consensus 214 ----------------~~~i~~SaT~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~----~~~~~~~~~------~~~~ 264 (413)
.|.+++|+-..+....++..++.+.. .+....... ... .+.+.+... ...+
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 34555555555555555555444321 111111000 000 111111100 1112
Q ss_pred chHHHHHH----HHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC--
Q 015129 265 WKLETLCD----LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-- 338 (413)
Q Consensus 265 ~~~~~l~~----~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-- 338 (413)
.+...... -+.......+|||.|+.-.--++..++++.++....++.-.+...-.+.-+.|..|...+|+-|.-
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~h 613 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAH 613 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhh
Confidence 22222222 112223346799999999999999999999888888888778888888899999999999999973
Q ss_pred CCCCCCCCCCcEEEEccCCCChh---hHHHhhhhccCCCC----cceEEEEeccCcHHHHHHHH
Q 015129 339 LARGIDVQQVSLVINYDLPTQPE---NYLHRIGRSGRFGR----KGVAINFVTRDDERMLFDIQ 395 (413)
Q Consensus 339 ~~~G~d~~~~~~vi~~~~~~s~~---~~~Q~~GR~~R~g~----~~~~~~~~~~~~~~~~~~~~ 395 (413)
.-+-.++.++..||+|.+|..+. +++.+.+|+.-.|+ .-.|.++|+..|.-.+..+.
T Consensus 614 ffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 614 FFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred hhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 56778899999999999999875 55778888866553 25789999998877665553
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.30 E-value=4.3e-11 Score=106.08 Aligned_cols=73 Identities=22% Similarity=0.205 Sum_probs=57.2
Q ss_pred CCCCCCcHHHHhhhhh----hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCC---ceeEEEEcCcHHHHHHHHHHHHH
Q 015129 58 YGFEKPSAIQQRGIVP----FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV---QCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~----i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~liv~P~~~l~~q~~~~~~~ 130 (413)
++| .|||.|.+.+.. +.+|+++++.+|||+|||++++.+++..+..... ..+++|+++|..+..|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 455 469999995554 4568999999999999999999999866544332 24899999999998888777765
Q ss_pred h
Q 015129 131 L 131 (413)
Q Consensus 131 ~ 131 (413)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.30 E-value=4.3e-11 Score=106.08 Aligned_cols=73 Identities=22% Similarity=0.205 Sum_probs=57.2
Q ss_pred CCCCCCcHHHHhhhhh----hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCC---ceeEEEEcCcHHHHHHHHHHHHH
Q 015129 58 YGFEKPSAIQQRGIVP----FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV---QCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~----i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~liv~P~~~l~~q~~~~~~~ 130 (413)
++| .|||.|.+.+.. +.+|+++++.+|||+|||++++.+++..+..... ..+++|+++|..+..|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 455 469999995554 4568999999999999999999999866544332 24899999999998888777765
Q ss_pred h
Q 015129 131 L 131 (413)
Q Consensus 131 ~ 131 (413)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 169
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.26 E-value=1.3e-09 Score=102.96 Aligned_cols=108 Identities=18% Similarity=0.277 Sum_probs=87.8
Q ss_pred cceEEEEccHHHHHHHHHHhhhCC------------------CeeEEecCCCCHHHHHHHHHHHhcCC---CcEEEEcCC
Q 015129 280 TQSVIFVNTRRKVDWLTDKMRSRD------------------HTVSATHGDMDQNTRDIIMREFRSGS---SRVLITTDL 338 (413)
Q Consensus 280 ~~~lif~~~~~~~~~l~~~L~~~~------------------~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vli~t~~ 338 (413)
.++|||..+......+.+.|..+. .....+.|..+..+|++.+++|+... .-++++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 367899999888888888886542 23446778889999999999998632 247788999
Q ss_pred CCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCc
Q 015129 339 LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 339 ~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 387 (413)
...|+|+-..+.+++++.-|++..-.|+..|+-|.|+...|+++=.--|
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 9999999988899999999999999999999999999877766544433
No 170
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.23 E-value=6.2e-09 Score=103.63 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=58.1
Q ss_pred CCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCC-----CCc--c---eEEEEeccCcHHHHHHHHHHh
Q 015129 329 SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF-----GRK--G---VAINFVTRDDERMLFDIQKFY 398 (413)
Q Consensus 329 ~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-----g~~--~---~~~~~~~~~~~~~~~~~~~~~ 398 (413)
..+.+++.+++.+|+|.|++-.+.-+....|...-.|.+||+.|. |.. + .-.+++..+.......+++..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 678999999999999999999999999889999999999999995 221 1 233445556667778888777
Q ss_pred ccc
Q 015129 399 NVV 401 (413)
Q Consensus 399 ~~~ 401 (413)
+..
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 654
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.05 E-value=6e-09 Score=89.89 Aligned_cols=130 Identities=24% Similarity=0.323 Sum_probs=96.5
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015129 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|+ .|++.|.-+.-.+.+|+ ++...||-|||+++.+++.-....+. .|-|++.+.-|+..-++++..+...+|+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~---~V~vvT~NdyLA~RD~~~~~~~y~~LGl 147 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGK---GVHVVTSNDYLAKRDAEEMRPFYEFLGL 147 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS----EEEEESSHHHHHHHHHHHHHHHHHTT-
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcC---CcEEEeccHHHhhccHHHHHHHHHHhhh
Confidence 355 89999999887777777 99999999999988777655554444 8999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHHH-HHHHcCC------CCCCcceEEEeccchHHh
Q 015129 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRVF-DMLRRQS------LRPDYIKMFVLDEADEML 195 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~-~~~~~~~------~~~~~~~~iV~DE~h~~~ 195 (413)
.+....++........... ++|+.+|...+. +.++... .....++++|+||+|.+.
T Consensus 148 sv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999887655544444 689999998873 4444311 113557899999999865
No 172
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.02 E-value=9e-10 Score=106.92 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=88.8
Q ss_pred ceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCC-cEE-EEcCCCCCCCCCCCCcEEEEccCCC
Q 015129 281 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS-RVL-ITTDLLARGIDVQQVSLVINYDLPT 358 (413)
Q Consensus 281 ~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~-~vl-i~t~~~~~G~d~~~~~~vi~~~~~~ 358 (413)
+++||++-...+..+...|...+.....+.|.++...|.+.+..|.++.. .++ ++..+...|+|+..+.||+..++-|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 89999999999999998888888899999999999999999999996543 344 5667999999999999999999999
Q ss_pred ChhhHHHhhhhccCCCCcceEEE
Q 015129 359 QPENYLHRIGRSGRFGRKGVAIN 381 (413)
Q Consensus 359 s~~~~~Q~~GR~~R~g~~~~~~~ 381 (413)
++....|++-|++|.|+...+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999998755443
No 173
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.97 E-value=1.7e-06 Score=81.84 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=71.6
Q ss_pred cceEEEEccHHHHHHHHHHhhhCCC-------eeEEecCCCCHHHHHHHHHHHh----cCCCcEEEEc--CCCCCCCCCC
Q 015129 280 TQSVIFVNTRRKVDWLTDKMRSRDH-------TVSATHGDMDQNTRDIIMREFR----SGSSRVLITT--DLLARGIDVQ 346 (413)
Q Consensus 280 ~~~lif~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~----~~~~~vli~t--~~~~~G~d~~ 346 (413)
+-+++|++|.+....+.+.+++.|+ +..++-...+ -+.+++.|. .|.-.+|++. .-+++|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 6799999999999999999987653 2223333222 344555554 4565677775 4789999997
Q ss_pred C--CcEEEEccCCCC--------------------------------hhhHHHhhhhccCCCCcceEEEEecc
Q 015129 347 Q--VSLVINYDLPTQ--------------------------------PENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 347 ~--~~~vi~~~~~~s--------------------------------~~~~~Q~~GR~~R~g~~~~~~~~~~~ 385 (413)
+ +++|+.+|.|.. +...-|.+|||.|..++--++.+++.
T Consensus 707 D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred cccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 5 788988887741 12246999999998776555655554
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.93 E-value=1.7e-08 Score=97.04 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=57.1
Q ss_pred CCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCC--Ccc-----------eEEEEeccCcHHHHHHH
Q 015129 328 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG--RKG-----------VAINFVTRDDERMLFDI 394 (413)
Q Consensus 328 ~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g--~~~-----------~~~~~~~~~~~~~~~~~ 394 (413)
...+.+++..++-+|+|=|++=.++-+....|...=.|.+||+.|.. +.| .-.+++..++...+..+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 46789999999999999999999999999999999999999999942 112 23345566666777777
Q ss_pred HHHhcc
Q 015129 395 QKFYNV 400 (413)
Q Consensus 395 ~~~~~~ 400 (413)
+...+.
T Consensus 562 qkEI~~ 567 (985)
T COG3587 562 QKEIND 567 (985)
T ss_pred HHHHHH
Confidence 665543
No 175
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.85 E-value=3.9e-08 Score=85.02 Aligned_cols=157 Identities=19% Similarity=0.194 Sum_probs=104.0
Q ss_pred CCcHHHHhhhhhhhc----------CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 62 KPSAIQQRGIVPFCK----------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~----------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
.+...|.+++-...+ ...+++-..||.||-......+++...++.+ +.|++..+..|..+..+.++.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~--r~vwvS~s~dL~~Da~RDl~DI 114 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK--RAVWVSVSNDLKYDAERDLRDI 114 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC--ceEEEECChhhhhHHHHHHHHh
Confidence 467788887766542 3568999999999998877777777666553 7999999999999999999987
Q ss_pred hcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCC-----------Cc-ceEEEeccchHHhccCc
Q 015129 132 GDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRP-----------DY-IKMFVLDEADEMLSRGF 199 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~-----------~~-~~~iV~DE~h~~~~~~~ 199 (413)
... .+.+..+..-.. . ....-+.+|+++|+..|........... .+ =.+||+||||...+...
T Consensus 115 G~~-~i~v~~l~~~~~---~-~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 115 GAD-NIPVHPLNKFKY---G-DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CCC-cccceechhhcc---C-cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 543 333332221100 0 0011245799999998865543211000 11 24899999999776543
Q ss_pred --------HHHHHHHHhhCCCCceEEEEEeeCCHh
Q 015129 200 --------KDQIYDIFQLLPAKVQVGVFSATMPPE 226 (413)
Q Consensus 200 --------~~~~~~~~~~~~~~~~~i~~SaT~~~~ 226 (413)
...+..+.+.+| +.++++.|||.-.+
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgase 223 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLP-NARVVYASATGASE 223 (303)
T ss_pred cCccccHHHHHHHHHHHhCC-CCcEEEecccccCC
Confidence 134455666665 56699999997543
No 176
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.83 E-value=3.3e-08 Score=95.27 Aligned_cols=303 Identities=15% Similarity=0.197 Sum_probs=178.7
Q ss_pred HhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCc--eeEEEEcCcHHHHHHHHHHHHH-hhcc----cCcEEE
Q 015129 68 QRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ--CQALVLAPTRELAQQIEKVMRA-LGDY----LGVKVH 140 (413)
Q Consensus 68 ~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~--~~~liv~P~~~l~~q~~~~~~~-~~~~----~~~~~~ 140 (413)
...+..+..+.-++|.+.||.|||..+.-.++..+.....+ ..+.+.-|++..+..+.+++.. .+.. .+..+.
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vR 463 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVR 463 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccc
Confidence 45666666778889999999999999888888888765432 3678888888887777776643 2222 222222
Q ss_pred EEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCC---CCceEE
Q 015129 141 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP---AKVQVG 217 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~---~~~~~i 217 (413)
.... .-....-|..||.+-+.+.+.+... .+.++++||.|...-. ...+..+++.+. ....++
T Consensus 464 f~Sa---------~prpyg~i~fctvgvllr~~e~glr---g~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl~v~ 529 (1282)
T KOG0921|consen 464 FDSA---------TPRPYGSIMFCTVGVLLRMMENGLR---GISHVIIDEIHERDVD--TDFVLIVLREMISTYRDLRVV 529 (1282)
T ss_pred cccc---------ccccccceeeeccchhhhhhhhccc---ccccccchhhhhhccc--hHHHHHHHHhhhccchhhhhh
Confidence 1111 0012236899999999888876443 3678999999975322 122222222221 234456
Q ss_pred EEEeeCCHhHHHH--------------------H-HHhcCCCEEEEecCCcc----------cccC-e-EEEE-------
Q 015129 218 VFSATMPPEALEI--------------------T-RKFMNKPVRILVKRDEL----------TLEG-I-KQFY------- 257 (413)
Q Consensus 218 ~~SaT~~~~~~~~--------------------~-~~~~~~~~~~~~~~~~~----------~~~~-~-~~~~------- 257 (413)
+||||...+.... . ..+......+....... .+.. . +..-
T Consensus 530 lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~ 609 (1282)
T KOG0921|consen 530 LMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSY 609 (1282)
T ss_pred hhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhh
Confidence 6666655432111 1 11111001110000000 0000 0 0000
Q ss_pred --------EEeccc---cchHHHHHHHHH-hhcccceEEEEccHHHHHHHHHHhhhC-------CCeeEEecCCCCHHHH
Q 015129 258 --------VNVEKE---EWKLETLCDLYE-TLAITQSVIFVNTRRKVDWLTDKMRSR-------DHTVSATHGDMDQNTR 318 (413)
Q Consensus 258 --------~~~~~~---~~~~~~l~~~~~-~~~~~~~lif~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r 318 (413)
...... ....+.+...+. ..-.+-+++|.+--...-.+...|... ...+...|+.....+.
T Consensus 610 ~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eq 689 (1282)
T KOG0921|consen 610 NESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQ 689 (1282)
T ss_pred cchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhh
Confidence 000000 011222222222 223457889999988888888777543 3467778888888888
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccC------------------CCChhhHHHhhhhccCCCCcceEE
Q 015129 319 DIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------------------PTQPENYLHRIGRSGRFGRKGVAI 380 (413)
Q Consensus 319 ~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~~~~~ 380 (413)
.++.+....|..+++++|.+.+..+.+.++..|++... ..|.....|+.||+||. ++|.|.
T Consensus 690 rkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f 768 (1282)
T KOG0921|consen 690 RKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCF 768 (1282)
T ss_pred hhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccc
Confidence 88888888899999999999999888877666664322 23566789999999997 568887
Q ss_pred EEecc
Q 015129 381 NFVTR 385 (413)
Q Consensus 381 ~~~~~ 385 (413)
.+...
T Consensus 769 ~lcs~ 773 (1282)
T KOG0921|consen 769 HLCSR 773 (1282)
T ss_pred cccHH
Confidence 76544
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.81 E-value=6.3e-09 Score=86.08 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=76.6
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHH-------HHHHHHHhhc
Q 015129 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ-------IEKVMRALGD 133 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q-------~~~~~~~~~~ 133 (413)
...+..|..++.++.+...+++.||.|||||+.++..+++.+..+... +++|+-|.....++ ..+.+.-+..
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~-kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYD-KIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S-EEEEEE-S--TT----SS---------TTTH
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCc-EEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 346788999999999889999999999999999999999888775444 88998887653111 0000000000
Q ss_pred ccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCC
Q 015129 134 YLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAK 213 (413)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~ 213 (413)
..--....+.+... .........|-+.+...+. +..+. -.+||+|||+.+ ....+..++.++..+
T Consensus 82 p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~iR------Grt~~-~~~iIvDEaQN~----t~~~~k~ilTR~g~~ 146 (205)
T PF02562_consen 82 PIYDALEELFGKEK----LEELIQNGKIEIEPLAFIR------GRTFD-NAFIIVDEAQNL----TPEELKMILTRIGEG 146 (205)
T ss_dssp HHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGGT------T--B--SEEEEE-SGGG------HHHHHHHHTTB-TT
T ss_pred HHHHHHHHHhChHh----HHHHhhcCeEEEEehhhhc------Ccccc-ceEEEEecccCC----CHHHHHHHHcccCCC
Confidence 00000000001111 1111223456666544331 12233 279999999986 467888999999988
Q ss_pred ceEEEEEee
Q 015129 214 VQVGVFSAT 222 (413)
Q Consensus 214 ~~~i~~SaT 222 (413)
.+++++.-.
T Consensus 147 skii~~GD~ 155 (205)
T PF02562_consen 147 SKIIITGDP 155 (205)
T ss_dssp -EEEEEE--
T ss_pred cEEEEecCc
Confidence 888876544
No 178
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.80 E-value=9e-10 Score=107.55 Aligned_cols=129 Identities=20% Similarity=0.256 Sum_probs=98.7
Q ss_pred cHHHHhhhhhhhc-CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEE
Q 015129 64 SAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC 142 (413)
Q Consensus 64 ~~~Q~~~~~~i~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 142 (413)
.|.|...+--+.. ..++++-+|||+|||.++..++...+..... .+++|+.|.++|+..-.+.+.+.....|+++.-+
T Consensus 929 n~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~ 1007 (1230)
T KOG0952|consen 929 NPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDELPGIKVIEL 1007 (1230)
T ss_pred CCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhcccCCceeEec
Confidence 3445544433332 5689999999999999999988877765544 5999999999999998888887665568899998
Q ss_pred EcCcchHHHHHHHHcCCcEEEEccHHHHHHHHc--CCCCCCcceEEEeccchHHhc
Q 015129 143 VGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR--QSLRPDYIKMFVLDEADEMLS 196 (413)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~--~~~~~~~~~~iV~DE~h~~~~ 196 (413)
.|+...+... ...++++|+||+++....++ ......++..+|+||.|.+..
T Consensus 1008 tgd~~pd~~~---v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1008 TGDVTPDVKA---VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred cCccCCChhh---eecCceEEcccccccCccccccchhhhccccceeecccccccC
Confidence 8887755221 23579999999999888774 334466788999999997653
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.76 E-value=8.5e-08 Score=83.26 Aligned_cols=68 Identities=25% Similarity=0.249 Sum_probs=50.7
Q ss_pred CcHHHHhhhhhhhcCCc-EEEeCCCCCcchHHhHHHHHHcc-----ccCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015129 63 PSAIQQRGIVPFCKGLD-VIQQAQSGTGKTATFCSGILQQL-----DYGLVQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 63 ~~~~Q~~~~~~i~~~~~-~li~~~tGsGKT~~~~~~~~~~~-----~~~~~~~~~liv~P~~~l~~q~~~~~~~ 130 (413)
+.+.|..|+..+++... .+|.||+|+|||.+....+.... .....+.++|+++|+..-+.+..+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67899999999999888 99999999999976544444331 1234455999999999999998888877
No 180
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.72 E-value=3.8e-07 Score=85.51 Aligned_cols=86 Identities=23% Similarity=0.210 Sum_probs=67.7
Q ss_pred HHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 52 LRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 52 ~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
-+.+...+++++...|..|+.++++..-.+|.||+|+|||.+....+. .+... ...++|+++|+..-+.|+++.+.+.
T Consensus 400 P~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVy-hl~~~-~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 400 PRRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVY-HLARQ-HAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred chhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHH-HHHHh-cCCceEEEcccchhHHHHHHHHHhc
Confidence 345566788999999999999999999999999999999988644443 44333 3449999999999999999988774
Q ss_pred hcccCcEEEEEE
Q 015129 132 GDYLGVKVHACV 143 (413)
Q Consensus 132 ~~~~~~~~~~~~ 143 (413)
|++++.+.
T Consensus 478 ----gLKVvRl~ 485 (935)
T KOG1802|consen 478 ----GLKVVRLC 485 (935)
T ss_pred ----CceEeeee
Confidence 45555443
No 181
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.72 E-value=4.6e-08 Score=79.60 Aligned_cols=107 Identities=20% Similarity=0.317 Sum_probs=73.9
Q ss_pred cccceEEEEccHHHHHHHHHHhhhCCC--eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC--CCCCCCCCCC--CcEE
Q 015129 278 AITQSVIFVNTRRKVDWLTDKMRSRDH--TVSATHGDMDQNTRDIIMREFRSGSSRVLITTD--LLARGIDVQQ--VSLV 351 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~--~~~~G~d~~~--~~~v 351 (413)
.++.+|||++|.+..+.+.+.++.... ...++.. ...++..+++.|..++-.||+++. .+.+|+|+++ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 448999999999999999999987642 2223332 355788999999999999999998 9999999995 7789
Q ss_pred EEccCCCC------------------------------hhhHHHhhhhccCCCCcceEEEEeccC
Q 015129 352 INYDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 352 i~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 386 (413)
|+.+.|.. .....|.+||+.|..++--++++++..
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 99888741 123489999999987764445555553
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.67 E-value=1.1e-07 Score=79.54 Aligned_cols=123 Identities=15% Similarity=0.189 Sum_probs=72.5
Q ss_pred CCcHHHHhhhhhhhcC--CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEE
Q 015129 62 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
++++-|.+++..++.+ +-.++.|++|+|||.+. ..+...+... +.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~~---------- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA--GKRVIGLAPTNKAAKELREKTG---------- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT--T--EEEEESSHHHHHHHHHHHT----------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC--CCeEEEECCcHHHHHHHHHhhC----------
Confidence 4688999999999753 34688899999999864 4444444433 3499999999987776555411
Q ss_pred EEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCC----CCCCcceEEEeccchHHhccCcHHHHHHHHhhCCC-Cc
Q 015129 140 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS----LRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA-KV 214 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~----~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~-~~ 214 (413)
+-..|..+++....... ......++|||||+-.+ ....+..++...+. ..
T Consensus 68 ---------------------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv----~~~~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 68 ---------------------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMV----DSRQLARLLRLAKKSGA 122 (196)
T ss_dssp ---------------------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-----BHHHHHHHHHHS-T-T-
T ss_pred ---------------------cchhhHHHHHhcCCcccccccccCCcccEEEEeccccc----CHHHHHHHHHHHHhcCC
Confidence 11233332221111110 11445689999999976 34566677777766 56
Q ss_pred eEEEEEee
Q 015129 215 QVGVFSAT 222 (413)
Q Consensus 215 ~~i~~SaT 222 (413)
+++++.-+
T Consensus 123 klilvGD~ 130 (196)
T PF13604_consen 123 KLILVGDP 130 (196)
T ss_dssp EEEEEE-T
T ss_pred EEEEECCc
Confidence 66666544
No 183
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.65 E-value=1.4e-06 Score=87.04 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=57.7
Q ss_pred CCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCH
Q 015129 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPP 225 (413)
Q Consensus 158 ~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 225 (413)
...|+++||..+..-+..+.+..+.+..|||||||++....-..-+.++....++..-+.++|+.|..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 46899999999988888899999999999999999987666566666777776677779999999973
No 184
>PRK10536 hypothetical protein; Provisional
Probab=98.54 E-value=1.8e-06 Score=73.68 Aligned_cols=143 Identities=18% Similarity=0.111 Sum_probs=84.4
Q ss_pred CCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHH-----------HHHHHHH
Q 015129 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL-----------AQQIEKV 127 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l-----------~~q~~~~ 127 (413)
++...+..|...+..+.++..+++.||+|+|||+.+...+++.+..+. -.++++.=|.... .+-...+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~ 134 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQADEDLGFLPGDIAEKFAPY 134 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCchhhhCcCCCCHHHHHHHH
Confidence 445677889999999988889999999999999998888876664433 3367777665432 1111111
Q ss_pred HHHhhcccCcEEEEEEcCcchHHHHHHHH-cCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHH
Q 015129 128 MRALGDYLGVKVHACVGGTSVREDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDI 206 (413)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~ 206 (413)
+.-+...+.. +.+. ........ ....|-|.... +++-. .+. -++||+|||+.+ ....+..+
T Consensus 135 ~~pi~D~L~~----~~~~---~~~~~~~~~~~~~Iei~~l~----ymRGr--tl~-~~~vIvDEaqn~----~~~~~k~~ 196 (262)
T PRK10536 135 FRPVYDVLVR----RLGA---SFMQYCLRPEIGKVEIAPFA----YMRGR--TFE-NAVVILDEAQNV----TAAQMKMF 196 (262)
T ss_pred HHHHHHHHHH----HhCh---HHHHHHHHhccCcEEEecHH----HhcCC--ccc-CCEEEEechhcC----CHHHHHHH
Confidence 1111111100 0111 11111111 22345555432 23322 233 378999999986 35778888
Q ss_pred HhhCCCCceEEEEE
Q 015129 207 FQLLPAKVQVGVFS 220 (413)
Q Consensus 207 ~~~~~~~~~~i~~S 220 (413)
+.+++.+.+++++.
T Consensus 197 ltR~g~~sk~v~~G 210 (262)
T PRK10536 197 LTRLGENVTVIVNG 210 (262)
T ss_pred HhhcCCCCEEEEeC
Confidence 89998888777643
No 185
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.47 E-value=7.1e-05 Score=68.83 Aligned_cols=73 Identities=14% Similarity=0.052 Sum_probs=48.6
Q ss_pred CCCCCCcHHHHhhhhhhhc----CCcEEEeCCCCCcchHHhHHHHHHccccCC-CceeEEEEcCcHHHHHHHHHHHHH
Q 015129 58 YGFEKPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYGL-VQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~liv~P~~~l~~q~~~~~~~ 130 (413)
+.+...+|-|..=...+.+ +.+.++.+|+|+|||.+.+..+......-. ...+.+|..-|..-.+....+++.
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHH
Confidence 4667788888776665543 678999999999999887665555443332 334777766665555555555444
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.36 E-value=2.5e-06 Score=78.54 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=67.7
Q ss_pred cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcC
Q 015129 79 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 158 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
-++|.|.+|||||++++-.+... .....+.++++++++..|...+...+..... ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------------------~~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QNSEEGKKVLYLCGNHPLRNKLREQLAKKYN----------------------PKL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hccccCCceEEEEecchHHHHHHHHHhhhcc----------------------cch
Confidence 46899999999999876555444 2223344899999999999887777765320 000
Q ss_pred CcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC-------cHHHHHHHHhh
Q 015129 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-------FKDQIYDIFQL 209 (413)
Q Consensus 159 ~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~-------~~~~~~~~~~~ 209 (413)
....+..+..+.............+++|||||||++.... ....+..++..
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1223344444433332223345668999999999998732 13455555555
No 187
>PF13245 AAA_19: Part of AAA domain
Probab=98.31 E-value=2.2e-06 Score=59.12 Aligned_cols=52 Identities=33% Similarity=0.391 Sum_probs=39.1
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHcccc-CCCceeEEEEcCcHHHHHHHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~ 128 (413)
+.-+++.+|+|||||.+..-.+...+.. ...+.++++++|++..+.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4445669999999998776666665532 122559999999999999888877
No 188
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.29 E-value=7.9e-06 Score=79.49 Aligned_cols=139 Identities=19% Similarity=0.184 Sum_probs=85.1
Q ss_pred HHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHcccc-C--CCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEE
Q 015129 65 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-G--LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 141 (413)
Q Consensus 65 ~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~--~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
+.|..|+...++++-++|.|++|+|||.+.. .++..+.. . ....++++++||-.-+..+.+.+......++..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc---
Confidence 7899999999999999999999999998743 23222221 1 112479999999887877777665533221110
Q ss_pred EEcCcchHHHHHHHHcCCcEEEEccHHHHHHHH------cCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCce
Q 015129 142 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLR------RQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 215 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~------~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
.... ....+-..|..+|+.... ........+++||+||+-.+ -...+..++..++...+
T Consensus 224 -------~~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv----d~~l~~~ll~al~~~~r 288 (586)
T TIGR01447 224 -------EALI----AALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV----DLPLMAKLLKALPPNTK 288 (586)
T ss_pred -------hhhh----hccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC----CHHHHHHHHHhcCCCCE
Confidence 0000 001111344333322211 11112234789999999875 34567778888888888
Q ss_pred EEEEEee
Q 015129 216 VGVFSAT 222 (413)
Q Consensus 216 ~i~~SaT 222 (413)
+|++.-.
T Consensus 289 lIlvGD~ 295 (586)
T TIGR01447 289 LILLGDK 295 (586)
T ss_pred EEEECCh
Confidence 8876544
No 189
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.27 E-value=1.1e-05 Score=80.88 Aligned_cols=131 Identities=20% Similarity=0.182 Sum_probs=79.2
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEE
Q 015129 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
..+++-|.+|+..+..++-+++.|++|+|||.+. -.++..+........+++++||..-+..+.+.. +....
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~-------g~~a~ 393 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT-------GLTAS 393 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc-------CCccc
Confidence 4799999999999998889999999999999764 344444433221137888999987665443321 11100
Q ss_pred EEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 141 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
+ ..+.+....+ ..... ........++||+||++.+. ...+..++..++...+++++.
T Consensus 394 ------T---ih~lL~~~~~-------~~~~~---~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~rlilvG 450 (720)
T TIGR01448 394 ------T---IHRLLGYGPD-------TFRHN---HLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHARLLLVG 450 (720)
T ss_pred ------c---HHHHhhccCC-------ccchh---hhhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCEEEEEC
Confidence 0 0011100000 00000 00112336899999999873 345567777788788888765
Q ss_pred ee
Q 015129 221 AT 222 (413)
Q Consensus 221 aT 222 (413)
-+
T Consensus 451 D~ 452 (720)
T TIGR01448 451 DT 452 (720)
T ss_pred cc
Confidence 54
No 190
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.26 E-value=3.2e-06 Score=78.95 Aligned_cols=66 Identities=24% Similarity=0.263 Sum_probs=54.8
Q ss_pred CCCcHHHHhhhhhhhcCCc-EEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHH
Q 015129 61 EKPSAIQQRGIVPFCKGLD-VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~~~-~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~ 129 (413)
..+.+.|..|+......++ .++.||+|+|||.+....+.+.+..++ ++|+..||..-+..+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k---~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKK---RVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCC---eEEEEcCchHHHHHHHHHhc
Confidence 3577889999998887754 689999999999998777777776665 99999999998888888643
No 191
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.25 E-value=8.9e-06 Score=75.86 Aligned_cols=113 Identities=14% Similarity=0.163 Sum_probs=63.9
Q ss_pred EeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhh-cccCcEEEEEEcCcchHHH----HHHHH
Q 015129 82 QQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALG-DYLGVKVHACVGGTSVRED----QRILQ 156 (413)
Q Consensus 82 i~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~ 156 (413)
..++||||||+++...+++....+-. ..|+.|......+.....+..-. ...-.+-.+..++.+.+-. ....+
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr--~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYR--NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchh--hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccC
Confidence 56899999999987777776655543 78888888777666655543210 0000000111111111100 00123
Q ss_pred cCCcEEEEccHHHHHHHHcCC---CCC---Ccce-EEEeccchHHhc
Q 015129 157 AGVHVVVGTPGRVFDMLRRQS---LRP---DYIK-MFVLDEADEMLS 196 (413)
Q Consensus 157 ~~~~iii~T~~~l~~~~~~~~---~~~---~~~~-~iV~DE~h~~~~ 196 (413)
....|+++|.+.|...+.+.. ..+ .+.. +.+-||+|++..
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 456899999999976664322 222 2223 567799999864
No 192
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.23 E-value=1.1e-05 Score=79.60 Aligned_cols=67 Identities=22% Similarity=0.224 Sum_probs=54.4
Q ss_pred CCCcHHHHhhhhhhhcC-CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015129 61 EKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~ 130 (413)
..+.+.|..|+..++.. ..++|.||+|+|||.+....+.+.+..+. ++++++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~---~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL---RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC---CEEEEcCcHHHHHHHHHHHHh
Confidence 46789999999998876 67899999999999886655555444433 999999999999888888776
No 193
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.22 E-value=1.3e-05 Score=78.23 Aligned_cols=140 Identities=19% Similarity=0.190 Sum_probs=86.8
Q ss_pred cHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHcccc--CCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEE
Q 015129 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY--GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 141 (413)
Q Consensus 64 ~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~--~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.+.|..|+...+.++-++|.|++|+|||.+.. .++..+.. .....++++++||..-+..+.+.+.......+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~--- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT--- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc---
Confidence 58999999999999999999999999997743 23322221 1123478999999988888887776543322210
Q ss_pred EEcCcchHHHHHHHHcCCcEEEEccHHHHHHHH------cCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCce
Q 015129 142 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLR------RQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 215 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~------~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
..... ....-..|-.+|+.... ....+.-.++++|+||+-.+ -...+..++..+++..+
T Consensus 230 -------~~~~~----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~~~r 294 (615)
T PRK10875 230 -------DEQKK----RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPPHAR 294 (615)
T ss_pred -------hhhhh----cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhcccCCE
Confidence 00000 00011233333221110 11112233689999999975 35667778888888899
Q ss_pred EEEEEee
Q 015129 216 VGVFSAT 222 (413)
Q Consensus 216 ~i~~SaT 222 (413)
+|++.-.
T Consensus 295 lIlvGD~ 301 (615)
T PRK10875 295 VIFLGDR 301 (615)
T ss_pred EEEecch
Confidence 8887655
No 194
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.16 E-value=4.9e-05 Score=63.71 Aligned_cols=127 Identities=18% Similarity=0.211 Sum_probs=80.0
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhc---CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCc
Q 015129 41 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK---GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 117 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~---~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~ 117 (413)
+|+....|.++.=.+. .++ .+|+.|.+....+.+ |.+.+...-+|.|||.+.+..+...+..+. .-+.++||
T Consensus 4 ~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVp- 78 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVP- 78 (229)
T ss_pred CCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcC-
Confidence 5666666666655442 233 689999999888876 678999999999999986554444444433 26677777
Q ss_pred HHHHHHHHHHHHHhhcc-cCcEEEEE--EcCcch--HH---H---HHHHHcCCcEEEEccHHHHHH
Q 015129 118 RELAQQIEKVMRALGDY-LGVKVHAC--VGGTSV--RE---D---QRILQAGVHVVVGTPGRVFDM 172 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~-~~~~~~~~--~~~~~~--~~---~---~~~~~~~~~iii~T~~~l~~~ 172 (413)
++|..|..+.+...... .+..+..+ ...... .. - .+.......|+++||+.+..+
T Consensus 79 k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 79 KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 67899988888764332 23333322 112111 11 1 111224568999999987543
No 195
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.13 E-value=1.5e-05 Score=77.75 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=32.5
Q ss_pred CCcHHHHhhhhhhhc----CCcEEEeCCCCCcchHHhHHHHHHc
Q 015129 62 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQ 101 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~----~~~~li~~~tGsGKT~~~~~~~~~~ 101 (413)
+|++.|...+..+++ ..+.++..|||+|||+..+...+..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW 64 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAW 64 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHH
Confidence 789999988877765 6789999999999998876555443
No 196
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=98.11 E-value=2.3e-05 Score=69.16 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=88.6
Q ss_pred CCCCCCcHHHHhhhhhhhcC--CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhccc
Q 015129 58 YGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 135 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 135 (413)
+|+......|.-|+..++.. .-+.+.++.|||||+.++.+.+......+.-.++++.=|+...-+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~------------- 290 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE------------- 290 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc-------------
Confidence 57767778899999999885 457889999999999999888888776666668888888765432
Q ss_pred CcEEEEEEcCcchH--HH-------HHHHHcCCcEEEEccHHHHHHHHcCCCCCCc----------ceEEEeccchHHhc
Q 015129 136 GVKVHACVGGTSVR--ED-------QRILQAGVHVVVGTPGRVFDMLRRQSLRPDY----------IKMFVLDEADEMLS 196 (413)
Q Consensus 136 ~~~~~~~~~~~~~~--~~-------~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~----------~~~iV~DE~h~~~~ 196 (413)
.+..+-|....+ .| ...+.+..+ ++.+.+...+....+.... -.+||+|||+.+
T Consensus 291 --dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~---~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL-- 363 (436)
T COG1875 291 --DIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNE---PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL-- 363 (436)
T ss_pred --ccCcCCCchhhhccchHHHHHhHHHHHhcccc---cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc--
Confidence 122222211110 01 001111111 1233343333332222111 248999999987
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEE
Q 015129 197 RGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
....+..++.+.....+++++.
T Consensus 364 --TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 --TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred --CHHHHHHHHHhccCCCEEEEcC
Confidence 5678889999999888888653
No 197
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=98.09 E-value=2e-05 Score=71.70 Aligned_cols=122 Identities=23% Similarity=0.156 Sum_probs=77.7
Q ss_pred CcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC-CCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEE
Q 015129 63 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 141 (413)
Q Consensus 63 ~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
+++-|.+++.. ..++++|.|++|||||.+.+.-+...+... ....++|++++|+..+.++.+++..........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~--- 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQE--- 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC---
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccc---
Confidence 46789999988 788899999999999999887777776655 344589999999999999999998865432110
Q ss_pred EEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHc-CCCCC-CcceEEEeccch
Q 015129 142 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRP-DYIKMFVLDEAD 192 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~~~~~-~~~~~iV~DE~h 192 (413)
................+.|.|.+.+...+.. ..... -.-.+-++|+..
T Consensus 76 ---~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 ---SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ---CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ---ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0000111222233457889999888554422 11111 112356667666
No 198
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.97 E-value=2.7e-05 Score=60.69 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=25.0
Q ss_pred eEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeC
Q 015129 184 KMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 223 (413)
Q Consensus 184 ~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 223 (413)
.+||+||+|++. . ...+..+........-.+++++++
T Consensus 89 ~~lviDe~~~l~--~-~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--S-DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--T-HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--C-HHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999975 2 555556655555544456667776
No 199
>PRK04296 thymidine kinase; Provisional
Probab=97.97 E-value=2e-05 Score=65.57 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=25.5
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
.-.++.||+|+|||..++-.+.+....+ .+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g---~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERG---MKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcC---CeEEEEec
Confidence 3468899999999987766555544433 37888766
No 200
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.96 E-value=8e-05 Score=58.36 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHhcCC-CcEEEEcCCCCCCCCCCC--CcEEEEccCCCC-----------------------------
Q 015129 312 DMDQNTRDIIMREFRSGS-SRVLITTDLLARGIDVQQ--VSLVINYDLPTQ----------------------------- 359 (413)
Q Consensus 312 ~~~~~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~~--~~~vi~~~~~~s----------------------------- 359 (413)
+....+...+++.|.... ..||+++..+.+|+|+++ +++||+.+.|..
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLP 109 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHH
Confidence 344545788889898654 369999988999999996 678888886631
Q ss_pred --hhhHHHhhhhccCCCCcceEEEEec
Q 015129 360 --PENYLHRIGRSGRFGRKGVAINFVT 384 (413)
Q Consensus 360 --~~~~~Q~~GR~~R~g~~~~~~~~~~ 384 (413)
...+.|.+||+.|..++--++++++
T Consensus 110 ~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 110 DAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1345889999999876543444443
No 201
>PRK08181 transposase; Validated
Probab=97.94 E-value=0.00012 Score=64.06 Aligned_cols=123 Identities=16% Similarity=0.168 Sum_probs=65.5
Q ss_pred CcHHHHhhhh----hhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcE
Q 015129 63 PSAIQQRGIV----PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK 138 (413)
Q Consensus 63 ~~~~Q~~~~~----~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
+...|..++. .+.+++++++.||+|+|||..+...+.+.+..+. +++++ +...|..+......
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~---~v~f~-~~~~L~~~l~~a~~--------- 154 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGW---RVLFT-RTTDLVQKLQVARR--------- 154 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCC---ceeee-eHHHHHHHHHHHHh---------
Confidence 3455555553 3446889999999999999776544444433322 55554 43444444321100
Q ss_pred EEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC-cHHHHHHHHhhCCCCceEE
Q 015129 139 VHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQLLPAKVQVG 217 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~-~~~~~~~~~~~~~~~~~~i 217 (413)
+ .+.+.+.+.+ ..++++|+||.+...... ....+..+++.......+|
T Consensus 155 ---------------------~---~~~~~~l~~l-------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~I 203 (269)
T PRK08181 155 ---------------------E---LQLESAIAKL-------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSIL 203 (269)
T ss_pred ---------------------C---CcHHHHHHHH-------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 0 1222222222 236899999998754322 2234555555443344566
Q ss_pred EEEeeCCHhHHH
Q 015129 218 VFSATMPPEALE 229 (413)
Q Consensus 218 ~~SaT~~~~~~~ 229 (413)
+.|-.++.++..
T Consensus 204 iTSN~~~~~w~~ 215 (269)
T PRK08181 204 ITANQPFGEWNR 215 (269)
T ss_pred EEcCCCHHHHHH
Confidence 666666554433
No 202
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.94 E-value=5.8e-05 Score=59.24 Aligned_cols=68 Identities=16% Similarity=0.280 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCC---cEEEEcCC--CCCCCCCCC--CcEEEEccCCCC------------------------------
Q 015129 317 TRDIIMREFRSGSS---RVLITTDL--LARGIDVQQ--VSLVINYDLPTQ------------------------------ 359 (413)
Q Consensus 317 ~r~~~~~~f~~~~~---~vli~t~~--~~~G~d~~~--~~~vi~~~~~~s------------------------------ 359 (413)
+...+++.|++..- .||+++.. +.+|+|+++ +++||+.+.|..
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44678888886443 58998876 999999996 678998887631
Q ss_pred -hhhHHHhhhhccCCCCcceEEEEec
Q 015129 360 -PENYLHRIGRSGRFGRKGVAINFVT 384 (413)
Q Consensus 360 -~~~~~Q~~GR~~R~g~~~~~~~~~~ 384 (413)
.....|.+||+.|..++--++++++
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEEe
Confidence 1235899999999876544454544
No 203
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.94 E-value=3.9e-05 Score=77.60 Aligned_cols=148 Identities=18% Similarity=0.068 Sum_probs=95.4
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHcccc---------------CCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEE
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDY---------------GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 141 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~---------------~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
|+++++.-..|+|||..-+...+..... -...+..|||||. ++..||.+++...+... +.+..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 5788999999999998766554443311 1123479999995 77889999999887653 56665
Q ss_pred EEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCC--------------CCCCc------ceEEEeccchHHhccCcHH
Q 015129 142 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS--------------LRPDY------IKMFVLDEADEMLSRGFKD 201 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~--------------~~~~~------~~~iV~DE~h~~~~~~~~~ 201 (413)
..|-.+.......-...+||++||++.|..-+.... ...+. +=-|++|||+.+-. ...
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 555443332222233468999999999866554321 11110 11489999998744 345
Q ss_pred HHHHHHhhCCCCceEEEEEeeCCHhHHH
Q 015129 202 QIYDIFQLLPAKVQVGVFSATMPPEALE 229 (413)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 229 (413)
...++..+++ ....-++|+||-..+.+
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTPIQKIDD 556 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCchhhhhh
Confidence 5555655554 34478899998765433
No 204
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.88 E-value=0.00027 Score=71.31 Aligned_cols=122 Identities=16% Similarity=0.105 Sum_probs=73.5
Q ss_pred CCCcHHHHhhhhhhhcC-CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEE
Q 015129 61 EKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKV 139 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
..+++-|..|+..++.+ +-+++.|++|+|||.+. -++...+.. .+.++++++||..-+..+.+. .+...
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--~g~~V~~~ApTg~Aa~~L~~~-------~g~~a 420 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--AGYRVIGAALSGKAAEGLQAE-------SGIES 420 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--CCCeEEEEeCcHHHHHHHHhc-------cCCce
Confidence 36899999999998874 66799999999999764 334433332 234899999987755554321 12211
Q ss_pred EEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhh-CCCCceEEE
Q 015129 140 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL-LPAKVQVGV 218 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~ 218 (413)
.|..++..........+...++||+||+-.+... .+..++.. .....++|+
T Consensus 421 ------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~~kliL 472 (744)
T TIGR02768 421 ------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAGAKVVL 472 (744)
T ss_pred ------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcCCEEEE
Confidence 1222221111222223455789999999976433 33344442 234566776
Q ss_pred EE
Q 015129 219 FS 220 (413)
Q Consensus 219 ~S 220 (413)
+.
T Consensus 473 VG 474 (744)
T TIGR02768 473 VG 474 (744)
T ss_pred EC
Confidence 65
No 205
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.85 E-value=0.00042 Score=62.90 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=78.7
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 156 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
++.+.++||||.|||.+..-.+...........-.+|.+.|--.. ..+.++.++...++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~----------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG--AVEQLKTYADIMGVPL----------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh--HHHHHHHHHHHhCCce-----------------
Confidence 677899999999999886544444442223333566666654322 2344555544444433
Q ss_pred cCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchH-HhccCcHHHHHHHHhhCCCCceEEEEEeeCCH-hHHHHHHHh
Q 015129 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE-MLSRGFKDQIYDIFQLLPAKVQVGVFSATMPP-EALEITRKF 234 (413)
Q Consensus 157 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~-~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~~~~~ 234 (413)
.++-+|..|...+.. +.++++|.+|=+-+ ..+......+..+.....+....+.+|||... ++++.+..|
T Consensus 264 ----~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f 335 (407)
T COG1419 264 ----EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF 335 (407)
T ss_pred ----EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh
Confidence 445666666555543 44468999996653 33333456666666666555667888999765 444555555
Q ss_pred c
Q 015129 235 M 235 (413)
Q Consensus 235 ~ 235 (413)
-
T Consensus 336 ~ 336 (407)
T COG1419 336 S 336 (407)
T ss_pred c
Confidence 3
No 206
>PRK06526 transposase; Provisional
Probab=97.85 E-value=0.00013 Score=63.49 Aligned_cols=39 Identities=21% Similarity=0.107 Sum_probs=26.7
Q ss_pred hhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEE
Q 015129 72 VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALV 113 (413)
Q Consensus 72 ~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~li 113 (413)
+.+..+.++++.||+|+|||..+...+......+. ++++
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~---~v~f 131 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGH---RVLF 131 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCC---chhh
Confidence 44556789999999999999887655444443332 5555
No 207
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.77 E-value=0.00039 Score=71.35 Aligned_cols=123 Identities=16% Similarity=0.061 Sum_probs=75.5
Q ss_pred CCcHHHHhhhhhhhcCC-cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEE
Q 015129 62 KPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~-~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
.+++-|.+++..++.++ -+++.|+.|+|||++ +-.+...+.. .+.+++.++||-.-+..+.+ ..|+.
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--~G~~V~~~ApTGkAA~~L~e-------~tGi~-- 413 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--AGYEVRGAALSGIAAENLEG-------GSGIA-- 413 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--cCCeEEEecCcHHHHHHHhh-------ccCcc--
Confidence 79999999999999865 479999999999986 4444444332 23489999998775544332 11221
Q ss_pred EEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhC-CCCceEEEE
Q 015129 141 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVF 219 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 219 (413)
-.|..+|..-...+...+...++|||||+-.+. ...+..++... +...++|++
T Consensus 414 ----------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 414 ----------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAGAKVVLV 467 (988)
T ss_pred ----------------------hhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCCCEEEEE
Confidence 112222221111222234456899999999764 33445555433 446777776
Q ss_pred Eee
Q 015129 220 SAT 222 (413)
Q Consensus 220 SaT 222 (413)
.-+
T Consensus 468 GD~ 470 (988)
T PRK13889 468 GDP 470 (988)
T ss_pred CCH
Confidence 554
No 208
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.77 E-value=6.1e-05 Score=65.00 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=35.7
Q ss_pred CCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCC
Q 015129 177 SLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 224 (413)
Q Consensus 177 ~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 224 (413)
....+.+++||+||||.+.... +..+.+.++......++++++.-+.
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 3445668999999999987665 5677777788777888888776654
No 209
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00037 Score=64.21 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=68.4
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccC-CCceeEEEEc-Cc-HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYG-LVQCQALVLA-PT-RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 153 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~liv~-P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
++.++++||||+|||.+..-.+....... ..+.++.++. .+ +.-+. ++++.++...++.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~~------------ 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVKA------------ 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceEe------------
Confidence 35689999999999988654443322221 1223444444 33 12222 2245554444444321
Q ss_pred HHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC-cHHHHHHHHhhCCCC-ceEEEEEeeCCHh-HHHH
Q 015129 154 ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQLLPAK-VQVGVFSATMPPE-ALEI 230 (413)
Q Consensus 154 ~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~-~~~~~~~~~~~~~~~-~~~i~~SaT~~~~-~~~~ 230 (413)
+-+++.+...+.. ..++++|++|++.+..... ....+..++...... ..++.+|||.... +.+.
T Consensus 239 ---------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~ 305 (388)
T PRK12723 239 ---------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEI 305 (388)
T ss_pred ---------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHH
Confidence 1233444444433 2457999999998764221 123444555544333 4578899998754 3333
Q ss_pred HHHh
Q 015129 231 TRKF 234 (413)
Q Consensus 231 ~~~~ 234 (413)
+..+
T Consensus 306 ~~~~ 309 (388)
T PRK12723 306 FHQF 309 (388)
T ss_pred HHHh
Confidence 3444
No 210
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.65 E-value=0.00061 Score=53.97 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=16.3
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015129 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
++.+++.||+|+|||..+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 6789999999999997643
No 211
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.62 E-value=0.00098 Score=68.98 Aligned_cols=137 Identities=18% Similarity=0.155 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhhhhhhc-CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHH
Q 015129 47 LQENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIE 125 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~ 125 (413)
+++.........+ ..+++-|..++..+.. ++-+++.|+.|+|||.+. -++...+.. .+.+++.++||-.-+..+.
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~--~G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA--AGYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH--cCCeEEEEcCcHHHHHHHH
Confidence 3444333333333 3799999999999865 456799999999999774 344443332 2348999999877554443
Q ss_pred HHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHH
Q 015129 126 KVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYD 205 (413)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~ 205 (413)
+. .|+.. .|..+|......+...+...++|||||+..+. ...+..
T Consensus 443 e~-------~Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~ 487 (1102)
T PRK13826 443 KE-------AGIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMAL 487 (1102)
T ss_pred Hh-------hCCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHH
Confidence 21 12211 22222211111122234446799999999763 344555
Q ss_pred HHhhCC-CCceEEEEEee
Q 015129 206 IFQLLP-AKVQVGVFSAT 222 (413)
Q Consensus 206 ~~~~~~-~~~~~i~~SaT 222 (413)
++...+ ...+++++.-+
T Consensus 488 Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 488 FVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHhcCCEEEEECCH
Confidence 555554 46777776655
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.61 E-value=0.00017 Score=56.76 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=26.3
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 120 (413)
+..+++.||+|+|||..+...+ ..+.... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccCCCC--CCEEEECCEEcc
Confidence 5678999999999998754333 2222221 257777776543
No 213
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.50 E-value=0.00038 Score=60.42 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=61.0
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCCCCCCCC--------CcEEEEccCCCChhhHHHhhhhccCCCCc-ceEEEEeccC---
Q 015129 319 DIIMREFRSGSSRVLITTDLLARGIDVQQ--------VSLVINYDLPTQPENYLHRIGRSGRFGRK-GVAINFVTRD--- 386 (413)
Q Consensus 319 ~~~~~~f~~~~~~vli~t~~~~~G~d~~~--------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~-~~~~~~~~~~--- 386 (413)
....+.|.+|+.+|+|.+.+.++|+.+.. -++.|.+.+||+....+|..||++|.|+. .-.|.++..+
T Consensus 51 ~~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~g 130 (278)
T PF13871_consen 51 IAEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPG 130 (278)
T ss_pred HHHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHH
Confidence 35667899999999999999999999763 24557889999999999999999999985 3334444433
Q ss_pred cHHHHHHHHHHhc
Q 015129 387 DERMLFDIQKFYN 399 (413)
Q Consensus 387 ~~~~~~~~~~~~~ 399 (413)
+.+....+.+.+.
T Consensus 131 E~Rfas~va~rL~ 143 (278)
T PF13871_consen 131 ERRFASTVARRLE 143 (278)
T ss_pred HHHHHHHHHHHHh
Confidence 4455555555443
No 214
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.48 E-value=6.1e-06 Score=79.87 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=55.4
Q ss_pred cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhc---CCCcEEEEcCCCCCC
Q 015129 278 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS---GSSRVLITTDLLARG 342 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---~~~~vli~t~~~~~G 342 (413)
.+.+++||....+..+-+...+...+ ....+.|..+...|...+..|+. .+...|++|.+.+.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 55699999999999999999998888 89999999999999999999993 345688888887665
No 215
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.44 E-value=0.00058 Score=67.70 Aligned_cols=123 Identities=17% Similarity=0.165 Sum_probs=75.4
Q ss_pred CCcHHHHhhhhhhhcC-CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEE
Q 015129 62 KPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
.+..-|++|+..++.. ...+|.|=+|+|||.+....+......++ ++|..+=|-.-+..+.-.+..+ ++...
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gk---kVLLtsyThsAVDNILiKL~~~----~i~~l 741 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGK---KVLLTSYTHSAVDNILIKLKGF----GIYIL 741 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCC---eEEEEehhhHHHHHHHHHHhcc----Cccee
Confidence 6788899999987775 45688999999999886555444444444 8888777766555555444443 33322
Q ss_pred EEEcCcchHH-----------------HHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHh
Q 015129 141 ACVGGTSVRE-----------------DQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML 195 (413)
Q Consensus 141 ~~~~~~~~~~-----------------~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~ 195 (413)
.+........ ....+-+...|+.||--.+.+.+. ....||+.|+|||-.+.
T Consensus 742 RLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred ecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccccCEEEEccccccc
Confidence 2222221111 122233466788888544433333 23448999999998654
No 216
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.42 E-value=9.7e-05 Score=59.74 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=54.7
Q ss_pred EEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCc
Q 015129 81 IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVH 160 (413)
Q Consensus 81 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (413)
++.|+-|-|||.+.-+++...+..+. .+++|.+|+.+-++..++.+..-....+++.... ...............
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGK--IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKK---KRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-----------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCCHHHHHHHHHHHHhhccccccccccc---cccccccccccccce
Confidence 57899999999876554444333332 4899999999988887777665444333332000 000001111123456
Q ss_pred EEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCC
Q 015129 161 VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 224 (413)
Q Consensus 161 iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 224 (413)
|-+..|+.+... ....+++|||||=.+ ....+..++...+ .+++|.|..
T Consensus 76 i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~~~~----~vv~stTi~ 124 (177)
T PF05127_consen 76 IEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLRRFP----RVVFSTTIH 124 (177)
T ss_dssp --B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBS
T ss_pred EEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHhhCC----EEEEEeecc
Confidence 777777766422 112489999999765 3455556654443 566777765
No 217
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.002 Score=58.81 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=65.9
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC-cH--HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP-TR--ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 154 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P-~~--~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
+.+.++||+|+|||..+...+......+ .++.++.. +. ..+.|+ +.++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~G---kkVglI~aDt~RiaAvEQL----k~yae~lgipv--------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQL----QDYVKTIGFEV--------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcC---CcEEEEecCCcchHHHHHH----HHHhhhcCCcE---------------
Confidence 5689999999999987655444332222 24444443 22 233333 33332223222
Q ss_pred HHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhcc-CcHHHHHHHHhhCCCCceEEEEEeeCCH-hHHHHHH
Q 015129 155 LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIYDIFQLLPAKVQVGVFSATMPP-EALEITR 232 (413)
Q Consensus 155 ~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~~~ 232 (413)
+.+.++..+.+.+..... ..++++|++|-+-+.... ..-..+..++....+...++.+|||... +......
T Consensus 300 ------~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~ 372 (436)
T PRK11889 300 ------IAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 372 (436)
T ss_pred ------EecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHH
Confidence 123356666555533111 123789999988653321 1223344444444344446668887654 4455555
Q ss_pred Hh
Q 015129 233 KF 234 (413)
Q Consensus 233 ~~ 234 (413)
.|
T Consensus 373 ~F 374 (436)
T PRK11889 373 NF 374 (436)
T ss_pred Hh
Confidence 54
No 218
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.0013 Score=60.07 Aligned_cols=170 Identities=19% Similarity=0.174 Sum_probs=82.3
Q ss_pred hccCcccCCCCHHHHHHHHHC-C----CCCC---cHHHHhhhhh-----------hhcCCcEEEeCCCCCcchHHhHHHH
Q 015129 38 VYDSFDAMGLQENLLRGIYAY-G----FEKP---SAIQQRGIVP-----------FCKGLDVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~-~----~~~~---~~~Q~~~~~~-----------i~~~~~~li~~~tGsGKT~~~~~~~ 98 (413)
....+...|+++.+.+.|-.. . ...+ +.+....+.. +.+|..+++.||||+|||.+....+
T Consensus 79 l~~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA 158 (374)
T PRK14722 79 LTKYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLA 158 (374)
T ss_pred HHHHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHH
Confidence 345567778888888777432 1 1111 2222222211 1236789999999999998865544
Q ss_pred HHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCC
Q 015129 99 LQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL 178 (413)
Q Consensus 99 ~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~ 178 (413)
......... .++.+++. ...-.--.+.++.++...++.+.. +-++..+...+..
T Consensus 159 ~~~~~~~G~-~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~~---------------------~~~~~~l~~~l~~--- 212 (374)
T PRK14722 159 ARCVMRFGA-SKVALLTT-DSYRIGGHEQLRIFGKILGVPVHA---------------------VKDGGDLQLALAE--- 212 (374)
T ss_pred HHHHHhcCC-CeEEEEec-ccccccHHHHHHHHHHHcCCceEe---------------------cCCcccHHHHHHH---
Confidence 443322111 14444432 221111223344444333443322 2233333333332
Q ss_pred CCCcceEEEeccchHHhccC-cHHHHHHHHhhCCCCceEEEEEeeCCHhHHH-HHHHh
Q 015129 179 RPDYIKMFVLDEADEMLSRG-FKDQIYDIFQLLPAKVQVGVFSATMPPEALE-ITRKF 234 (413)
Q Consensus 179 ~~~~~~~iV~DE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~-~~~~~ 234 (413)
+.+.++|+||.+-...... ....+..+.........++.++||...+... ....|
T Consensus 213 -l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 213 -LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred -hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 2336899999996432111 1223333322222234578899998765433 33444
No 219
>PRK14974 cell division protein FtsY; Provisional
Probab=97.37 E-value=0.0029 Score=57.27 Aligned_cols=131 Identities=23% Similarity=0.306 Sum_probs=70.8
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCc---HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT---RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 154 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~---~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
.-+++.|++|+|||.+....+. .+... +.+++++... ..-..|+...... .+..+.....+.+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~-~l~~~--g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g~d------- 206 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAY-YLKKN--GFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYGAD------- 206 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH-HHHHc--CCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCCCC-------
Confidence 4578999999999987543333 23222 2266555443 3334444333333 3444322111111
Q ss_pred HHcCCcEEEEccHH-HHHHHHcCCCCCCcceEEEeccchHHh-ccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHH
Q 015129 155 LQAGVHVVVGTPGR-VFDMLRRQSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITR 232 (413)
Q Consensus 155 ~~~~~~iii~T~~~-l~~~~~~~~~~~~~~~~iV~DE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~ 232 (413)
|.. +.+.+... ...++++|++|.+++.. +......+..+.....+...++.++|+...+......
T Consensus 207 -----------p~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~ 273 (336)
T PRK14974 207 -----------PAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAR 273 (336)
T ss_pred -----------HHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHH
Confidence 111 11222110 11235899999999864 2334456666666666677788899998776665555
Q ss_pred Hhc
Q 015129 233 KFM 235 (413)
Q Consensus 233 ~~~ 235 (413)
.|.
T Consensus 274 ~f~ 276 (336)
T PRK14974 274 EFN 276 (336)
T ss_pred HHH
Confidence 553
No 220
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.00077 Score=63.35 Aligned_cols=21 Identities=24% Similarity=0.047 Sum_probs=16.8
Q ss_pred cEEEeCCCCCcchHHhHHHHH
Q 015129 79 DVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~ 99 (413)
..++.||.|+|||.++...+.
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999988755443
No 221
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.32 E-value=0.0004 Score=69.50 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=56.8
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHcccc-CCCceeEEEEcCcHHHHHHHHHHHHHhhc
Q 015129 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~~~ 133 (413)
.+++-|.+++.+ ...+++|.|++|||||.+...-+.+.+.. +....++|+++.|+..+.++.+++.....
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478899999976 35678899999999999988777777753 33344899999999999999999887643
No 222
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.26 E-value=0.00096 Score=66.45 Aligned_cols=71 Identities=24% Similarity=0.239 Sum_probs=55.9
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC-CCceeEEEEcCcHHHHHHHHHHHHHhhc
Q 015129 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-LVQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~liv~P~~~l~~q~~~~~~~~~~ 133 (413)
..+++-|.+++.. ...+++|.|.+|||||.+....+.+.+... ....++++++.++..+..+.+++.....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 4699999999964 345689999999999999877666655443 2334999999999999999998877543
No 223
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.0017 Score=63.15 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=25.0
Q ss_pred cceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 182 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 182 ~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
.++++|+||+|.+.... ...+.+.+...+....+|+.|
T Consensus 118 k~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 46899999999886544 345555556555556555544
No 224
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.26 E-value=0.0016 Score=69.77 Aligned_cols=123 Identities=16% Similarity=0.143 Sum_probs=79.8
Q ss_pred CcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEE
Q 015129 63 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC 142 (413)
Q Consensus 63 ~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 142 (413)
.++-|.+++.. .+++++|.|+.|||||.+.+--++..+..+....++++++=|+.-+.++.+++.+.....-..
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~---- 75 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ---- 75 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc----
Confidence 57889999974 789999999999999999888787777655433479999999999999999887754321000
Q ss_pred EcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCc--ceEEEeccchH
Q 015129 143 VGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY--IKMFVLDEADE 193 (413)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~--~~~iV~DE~h~ 193 (413)
........+.+..-...-|+|..+|...+-+.....-+ ..+=|.||...
T Consensus 76 --~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 76 --EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred --CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00111112222233456789999886544322211111 13345887764
No 225
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.25 E-value=0.00096 Score=55.67 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=67.7
Q ss_pred cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcC
Q 015129 79 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 158 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
-++++||||+|||.+..-.+.+.... +.++.+++--.- -.-..++++.++...++.+.......
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~-R~ga~eQL~~~a~~l~vp~~~~~~~~------------ 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTY-RIGAVEQLKTYAEILGVPFYVARTES------------ 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTS-STHHHHHHHHHHHHHTEEEEESSTTS------------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCC-CccHHHHHHHHHHHhccccchhhcch------------
Confidence 46899999999998865555444433 225554443211 11123344444444455443321111
Q ss_pred CcEEEEccHH-HHHHHHcCCCCCCcceEEEeccchHHh-ccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHh
Q 015129 159 VHVVVGTPGR-VFDMLRRQSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKF 234 (413)
Q Consensus 159 ~~iii~T~~~-l~~~~~~~~~~~~~~~~iV~DE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~ 234 (413)
.|.. +.+.++. ...+++++|++|-+-+.. +......+..+.....+..-.+.++||...+.......+
T Consensus 67 ------~~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 67 ------DPAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp ------CHHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred ------hhHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 1111 1122221 112236889999886432 122345666666666666678889999887655544444
No 226
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.0029 Score=60.17 Aligned_cols=39 Identities=10% Similarity=0.229 Sum_probs=24.5
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
..++++|+||+|.+.... ...+.+.++.-++...+|+.|
T Consensus 115 ~~~KVvIIDEah~Ls~~A-~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSA-FNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChHhCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 457899999999886543 334444455545555555544
No 227
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.23 E-value=0.0021 Score=63.41 Aligned_cols=40 Identities=13% Similarity=0.283 Sum_probs=25.9
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEe
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 221 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 221 (413)
..++++||||+|.+.... ...+.+.++.-+.+..+|+.|.
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEEC
Confidence 347899999999986554 3444555566555665555443
No 228
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.23 E-value=0.0023 Score=61.12 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=26.6
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 123 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 123 (413)
+.+++.||+|+|||..+. ++...+....++.+++++.. ..+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~~~~~~v~yi~~-~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEKNPNAKVVYVTS-EKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEEEH-HHHHHH
Confidence 458999999999997753 33333433333446666643 444433
No 229
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0021 Score=61.84 Aligned_cols=39 Identities=13% Similarity=0.288 Sum_probs=26.3
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
..++++|+||+|.+.... ...+.+.++..++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 347899999999986544 344455666666666666655
No 230
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.21 E-value=0.00055 Score=63.29 Aligned_cols=58 Identities=29% Similarity=0.292 Sum_probs=41.9
Q ss_pred CCcHHHHhhhhhh------hcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHH
Q 015129 62 KPSAIQQRGIVPF------CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 122 (413)
Q Consensus 62 ~~~~~Q~~~~~~i------~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 122 (413)
++++-|+.++..+ .++.++++.|+.|+|||+.+ -.+...+.. .+..+++++||-.-|.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~--~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS--RGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc--ccceEEEecchHHHHH
Confidence 3567799998888 66899999999999999874 333333333 2337888888766443
No 231
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.19 E-value=0.0051 Score=57.86 Aligned_cols=129 Identities=20% Similarity=0.261 Sum_probs=64.4
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHcc-ccCCCceeEEEEcC-cHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQL-DYGLVQCQALVLAP-TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 154 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~-~~~~~~~~~liv~P-~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
++.+++.+|||+|||.+....+.... ..+. .++.++.- +.-.+ ..+.+..++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g--~~V~li~~D~~r~~--a~eqL~~~a~~~~vp~~-------------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK--KKVALITLDTYRIG--AVEQLKTYAKIMGIPVE-------------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--CeEEEEECCccHHH--HHHHHHHHHHHhCCceE--------------
Confidence 56789999999999987654444332 1221 24444433 21110 12333333332333221
Q ss_pred HHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhc-cCcHHHHHHHHhhC-CCCceEEEEEeeCCHhHH-HHH
Q 015129 155 LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQLL-PAKVQVGVFSATMPPEAL-EIT 231 (413)
Q Consensus 155 ~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~-~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~-~~~ 231 (413)
.+.+++.+...+.. +.++++|+||.+-+... ......+..++... .+....+.+++|...... +..
T Consensus 283 -------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~ 351 (424)
T PRK05703 283 -------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIY 351 (424)
T ss_pred -------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHH
Confidence 12344444444443 22479999998864321 11223444554422 223457789999876433 333
Q ss_pred HHh
Q 015129 232 RKF 234 (413)
Q Consensus 232 ~~~ 234 (413)
..|
T Consensus 352 ~~f 354 (424)
T PRK05703 352 KHF 354 (424)
T ss_pred HHh
Confidence 433
No 232
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.18 E-value=0.0012 Score=56.31 Aligned_cols=106 Identities=19% Similarity=0.294 Sum_probs=58.9
Q ss_pred cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcC
Q 015129 79 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 158 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
.+++.||+|+|||-. +.++...+....++.+++|+... +........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~---------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD---------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT----------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc----------------------------
Confidence 489999999999975 55555555444444477776542 333222222211
Q ss_pred CcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC-cHHHHHHHHhhCC-CCceEEEEEeeCCHh
Q 015129 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQLLP-AKVQVGVFSATMPPE 226 (413)
Q Consensus 159 ~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~-~~~~~~~~~~~~~-~~~~~i~~SaT~~~~ 226 (413)
...+.+.+.+. ..+++++|++|.+.... +...+..+++.+. .+.++++.|..+|..
T Consensus 86 -----~~~~~~~~~~~-------~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 86 -----GEIEEFKDRLR-------SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp -----TSHHHHHHHHC-------TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred -----ccchhhhhhhh-------cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 12233333332 36899999999986542 3445555555443 345666666565543
No 233
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.18 E-value=0.0043 Score=50.11 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=24.7
Q ss_pred EEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHH
Q 015129 80 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120 (413)
Q Consensus 80 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 120 (413)
+++.|++|+|||..+...+..... .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcch
Confidence 688999999999876544443322 23377777665443
No 234
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.17 E-value=0.0013 Score=53.14 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=32.2
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCH
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPP 225 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 225 (413)
...+++|+||+|.+.... ...+.+.++.-+.+..++++|..+..
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECChHH
Confidence 457999999999876554 67777788887878877777766653
No 235
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.0035 Score=50.87 Aligned_cols=105 Identities=22% Similarity=0.284 Sum_probs=61.4
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc-EEEEEEcCcchHHHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV-KVHACVGGTSVREDQRIL 155 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 155 (413)
|+-.++.+|++||||.-.+-.+......+. ++++..|...-- .+. .+....|. .
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~---~v~vfkp~iD~R-------------~~~~~V~Sr~G~-~-------- 58 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGM---KVLVFKPAIDTR-------------YGVGKVSSRIGL-S-------- 58 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCC---eEEEEecccccc-------------cccceeeeccCC-c--------
Confidence 344689999999999876555544444444 889988854311 111 12222221 1
Q ss_pred HcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhC
Q 015129 156 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL 210 (413)
Q Consensus 156 ~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~ 210 (413)
..-++|-.+..+.+.+........ ++.|.+||||.+.. .....+.++...+
T Consensus 59 --~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~~-~~v~~l~~lad~l 109 (201)
T COG1435 59 --SEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFDE-ELVYVLNELADRL 109 (201)
T ss_pred --ccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCCH-HHHHHHHHHHhhc
Confidence 134566677777777765433332 78999999997533 2244455555443
No 236
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0029 Score=61.46 Aligned_cols=43 Identities=14% Similarity=0.324 Sum_probs=26.8
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCC
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 224 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 224 (413)
..++++||||+|.+....+ ..+.+.++.-+.+..+|+.|.-+.
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeCChH
Confidence 3478999999999865443 334444455455666666554433
No 237
>PRK05642 DNA replication initiation factor; Validated
Probab=97.15 E-value=0.0024 Score=55.11 Aligned_cols=43 Identities=16% Similarity=0.427 Sum_probs=27.3
Q ss_pred ceEEEeccchHHhcc-CcHHHHHHHHhhCCCCceEEEEEeeCCH
Q 015129 183 IKMFVLDEADEMLSR-GFKDQIYDIFQLLPAKVQVGVFSATMPP 225 (413)
Q Consensus 183 ~~~iV~DE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 225 (413)
++++++|++|.+... .+...+..+++.+..+...+++|++.++
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 578999999977543 3345566777665544345566666443
No 238
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.13 E-value=0.0025 Score=60.07 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=24.2
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 115 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~ 115 (413)
..+++.||+|+|||..+ .++...+....++.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 45799999999999775 34444443333344677764
No 239
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.0019 Score=58.23 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=23.4
Q ss_pred eEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCH
Q 015129 184 KMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPP 225 (413)
Q Consensus 184 ~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 225 (413)
.++++||+|++.. .+-..++..+. +..++++.||-.+
T Consensus 106 tiLflDEIHRfnK----~QQD~lLp~vE-~G~iilIGATTEN 142 (436)
T COG2256 106 TILFLDEIHRFNK----AQQDALLPHVE-NGTIILIGATTEN 142 (436)
T ss_pred eEEEEehhhhcCh----hhhhhhhhhhc-CCeEEEEeccCCC
Confidence 5799999999732 22233444443 4457888888654
No 240
>PRK12377 putative replication protein; Provisional
Probab=97.09 E-value=0.0038 Score=54.00 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=26.1
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 124 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 124 (413)
..++++.||+|+|||..+...+- .+... +..+++ ++..++..++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~-~l~~~--g~~v~~-i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN-RLLAK--GRSVIV-VTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH-HHHHc--CCCeEE-EEHHHHHHHH
Confidence 36789999999999987544333 33322 224444 4444555543
No 241
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.08 E-value=0.0011 Score=67.17 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=57.9
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHcccc-CCCceeEEEEcCcHHHHHHHHHHHHHhhc
Q 015129 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~~~ 133 (413)
..+++-|.+++.+ ...+++|.|.+|||||.+...-+.+.+.. +-...++|+++.|+..|.++.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3689999999976 35689999999999999987777776654 33344899999999999999999988754
No 242
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.08 E-value=0.0026 Score=64.20 Aligned_cols=69 Identities=16% Similarity=0.117 Sum_probs=56.3
Q ss_pred CcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHcccc-CCCceeEEEEcCcHHHHHHHHHHHHHhhc
Q 015129 63 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 63 ~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~~~ 133 (413)
+++-|.+++.+ ...+++|.|++|||||.+.+..+.+.+.. +....++++++.|+..+.++.+++.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 67889999875 45789999999999999988877777753 33445899999999999999999987654
No 243
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.002 Score=64.76 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=24.1
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 219 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 219 (413)
..++++||||+|.+.... ...+.+.+..-+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 347899999999985333 34444555555555655554
No 244
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.06 E-value=0.00094 Score=64.79 Aligned_cols=156 Identities=21% Similarity=0.222 Sum_probs=92.9
Q ss_pred CCcHHHHhhhhhhhc--------CC--cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 62 KPSAIQQRGIVPFCK--------GL--DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~--------~~--~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
.+...|.+++-...+ |. .++|-...|.||-.+..-.++.....+. .++||+.-+..|--+..+.++..
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGR--KrAlW~SVSsDLKfDAERDL~Di 341 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGR--KRALWFSVSSDLKFDAERDLRDI 341 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhccc--ceeEEEEeccccccchhhchhhc
Confidence 467789888877654 32 4677777777776544333333333333 39999999999988888888776
Q ss_pred hcccCcEEEEEEcCcchHHH-HHHHHcCCcEEEEccHHHHHHHHcC---------------CCCCCcceEEEeccchHHh
Q 015129 132 GDYLGVKVHACVGGTSVRED-QRILQAGVHVVVGTPGRVFDMLRRQ---------------SLRPDYIKMFVLDEADEML 195 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iii~T~~~l~~~~~~~---------------~~~~~~~~~iV~DE~h~~~ 195 (413)
.. .++.|..+..-.-.+-. ...-+.+-.++++|+..|.---..+ +..+ =++||+||||...
T Consensus 342 gA-~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~f--eGvIvfDECHkAK 418 (1300)
T KOG1513|consen 342 GA-TGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDF--EGVIVFDECHKAK 418 (1300)
T ss_pred CC-CCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhcc--ceeEEehhhhhhc
Confidence 43 24554433211000000 0000113479999997664222110 0111 2589999999865
Q ss_pred cc---------CcHHHHHHHHhhCCCCceEEEEEeeC
Q 015129 196 SR---------GFKDQIYDIFQLLPAKVQVGVFSATM 223 (413)
Q Consensus 196 ~~---------~~~~~~~~~~~~~~~~~~~i~~SaT~ 223 (413)
+. ..+..+..+.+.+| +.++++-|||-
T Consensus 419 NL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 419 NLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred ccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 41 13466667777775 67799999994
No 245
>PRK09183 transposase/IS protein; Provisional
Probab=97.06 E-value=0.0084 Score=52.54 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=26.9
Q ss_pred hhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc
Q 015129 72 VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 115 (413)
Q Consensus 72 ~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~ 115 (413)
..+.++.++++.||+|+|||..+...+......+ .+++++.
T Consensus 97 ~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G---~~v~~~~ 137 (259)
T PRK09183 97 SFIERNENIVLLGPSGVGKTHLAIALGYEAVRAG---IKVRFTT 137 (259)
T ss_pred CchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEe
Confidence 3356688999999999999977654443333322 2555543
No 246
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.05 E-value=0.059 Score=60.43 Aligned_cols=135 Identities=13% Similarity=0.135 Sum_probs=81.3
Q ss_pred CCcHHHHhhhhhhhcC--CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEE
Q 015129 62 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
.+++-|..++..++.. +-.++.++.|+|||.+. -.+...+.. .+.+++.++|+..-+..+.+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~--~G~~V~~lAPTgrAA~~L~e~~g~~A------- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE--QGYEIQIITAGSLSAQELRQKIPRLA------- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHhcchh-------
Confidence 6889999999998875 56799999999999763 444444332 23489999999886666555432110
Q ss_pred EEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhC-CCCceEEE
Q 015129 140 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGV 218 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~ 218 (413)
.+...+...... ..-..|...|. .....+...++|||||+-.+. ...+..++... +.+.++|+
T Consensus 499 ------~Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~garvVl 562 (1960)
T TIGR02760 499 ------STFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNSKLIL 562 (1960)
T ss_pred ------hhHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCCEEEE
Confidence 001111111111 11122333333 222334456899999999763 45555666554 35778887
Q ss_pred EEee
Q 015129 219 FSAT 222 (413)
Q Consensus 219 ~SaT 222 (413)
+.-+
T Consensus 563 vGD~ 566 (1960)
T TIGR02760 563 LNDS 566 (1960)
T ss_pred EcCh
Confidence 7665
No 247
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.04 E-value=0.0012 Score=66.81 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=57.3
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHcccc-CCCceeEEEEcCcHHHHHHHHHHHHHhhc
Q 015129 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~~~ 133 (413)
.+++-|.+++.+ ...+++|.|++|||||.+...-+.+.+.. +-...++|+++-|+..+.++.+++.++..
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 689999999975 35689999999999999987777766643 33344899999999999999999988654
No 248
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=97.03 E-value=0.0017 Score=62.50 Aligned_cols=146 Identities=14% Similarity=0.074 Sum_probs=81.4
Q ss_pred HHHHhhhhhhh-----cC----CcEEEeCCCCCcchHHhHHHHHHcc-ccCCCceeEEEEcCcHHHHHHHHHHHHHhhcc
Q 015129 65 AIQQRGIVPFC-----KG----LDVIQQAQSGTGKTATFCSGILQQL-DYGLVQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 65 ~~Q~~~~~~i~-----~~----~~~li~~~tGsGKT~~~~~~~~~~~-~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~ 134 (413)
|+|...+..+. .| +.+++.-|-|-|||......++..+ ..+..+..++++++++.-+...++.+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 56776666655 12 4588889999999976655444444 34455669999999999999999999887654
Q ss_pred cCcEEEEEEcCcchHHHHHH-HHcCCcEEEEccHHHHHHHHc--CCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCC
Q 015129 135 LGVKVHACVGGTSVREDQRI-LQAGVHVVVGTPGRVFDMLRR--QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP 211 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~-~~~~~~iii~T~~~l~~~~~~--~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~ 211 (413)
........ ..+. ......|.....+.....+-. ....-.+..++|+||+|.+.+......+..-....
T Consensus 81 ~~~l~~~~--------~~~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r- 151 (477)
T PF03354_consen 81 SPELRKRK--------KPKIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGAR- 151 (477)
T ss_pred Chhhccch--------hhhhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccC-
Confidence 21111000 0000 001122332222222222211 22222346899999999886544344444444443
Q ss_pred CCceEEEE
Q 015129 212 AKVQVGVF 219 (413)
Q Consensus 212 ~~~~~i~~ 219 (413)
.+++++++
T Consensus 152 ~~pl~~~I 159 (477)
T PF03354_consen 152 PNPLIIII 159 (477)
T ss_pred CCceEEEE
Confidence 34445544
No 249
>PRK08116 hypothetical protein; Validated
Probab=97.02 E-value=0.0066 Score=53.45 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=24.8
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 122 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 122 (413)
..+++.|++|+|||..+.. +...+... +..++++ +...+..
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l~~~--~~~v~~~-~~~~ll~ 155 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANELIEK--GVPVIFV-NFPQLLN 155 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHHc--CCeEEEE-EHHHHHH
Confidence 4599999999999987643 44444332 2245444 4444443
No 250
>PRK06893 DNA replication initiation factor; Validated
Probab=97.01 E-value=0.0025 Score=54.89 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=27.5
Q ss_pred cceEEEeccchHHhc-cCcHHHHHHHHhhCCC-CceEEEEEeeCCHh
Q 015129 182 YIKMFVLDEADEMLS-RGFKDQIYDIFQLLPA-KVQVGVFSATMPPE 226 (413)
Q Consensus 182 ~~~~iV~DE~h~~~~-~~~~~~~~~~~~~~~~-~~~~i~~SaT~~~~ 226 (413)
+.+++++||+|.+.. ..+...+..+++.... +.+++++|++.++.
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 468999999998753 2233445555554433 34566777775543
No 251
>PHA02533 17 large terminase protein; Provisional
Probab=97.00 E-value=0.0042 Score=60.07 Aligned_cols=148 Identities=14% Similarity=0.080 Sum_probs=84.3
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc--EE
Q 015129 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV--KV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~--~~ 139 (413)
.|.|+|...+..+..++-.++..+-..|||.+....++..... .++..+++++|+..-+....+.++.+....+. ..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~ 137 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-NKDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQP 137 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhc
Confidence 6889999999887666777889999999998876544433332 23449999999999988888888765443211 10
Q ss_pred EEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCC--CceEE
Q 015129 140 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA--KVQVG 217 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~--~~~~i 217 (413)
.... . + ...-.+.++..|.+.|.+. ....-.+..++++||+|.+.+ ....+..+...+.. ..+++
T Consensus 138 ~i~~-~-~--~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~~r~i 204 (534)
T PHA02533 138 GIVE-W-N--KGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRSSKII 204 (534)
T ss_pred ceee-c-C--ccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCCceEE
Confidence 0000 0 0 0000112444554544321 111122356899999997643 22333444433332 23455
Q ss_pred EEEeeC
Q 015129 218 VFSATM 223 (413)
Q Consensus 218 ~~SaT~ 223 (413)
+.|++.
T Consensus 205 iiSTp~ 210 (534)
T PHA02533 205 ITSTPN 210 (534)
T ss_pred EEECCC
Confidence 555443
No 252
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.00 E-value=0.0034 Score=53.97 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=18.2
Q ss_pred cCCcEEEeCCCCCcchHHhHHHH
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~ 98 (413)
.+.++++.||+|+|||..+...+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 35789999999999998764433
No 253
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.99 E-value=0.0057 Score=62.16 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=27.7
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
..++++||||+|.+.... ...+.++++..+....+|+.|
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 457899999999986544 445666666666676666655
No 254
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.99 E-value=0.0034 Score=59.58 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=29.6
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEK 126 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~ 126 (413)
+.+++.|++|+|||..+ .++...+....++.+++++.+ ..+..+...
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~ 188 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVD 188 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHH
Confidence 45899999999999664 455554444344447777655 444444433
No 255
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.99 E-value=0.0028 Score=55.81 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=17.0
Q ss_pred CCcEEEeCCCCCcchHHhHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSG 97 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~ 97 (413)
..++++.||+|+|||.++-..
T Consensus 42 ~~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHH
Confidence 357899999999999876433
No 256
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.0036 Score=56.72 Aligned_cols=39 Identities=15% Similarity=-0.014 Sum_probs=29.9
Q ss_pred CCcHHHHhhhhhhhcC----CcEEEeCCCCCcchHHhHHHHHH
Q 015129 62 KPSAIQQRGIVPFCKG----LDVIQQAQSGTGKTATFCSGILQ 100 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~----~~~li~~~tGsGKT~~~~~~~~~ 100 (413)
.++|+|...+..+.+. +-.++.||.|.|||..+...+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ 45 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAA 45 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHH
Confidence 3578999999998763 35789999999999876544433
No 257
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.96 E-value=0.011 Score=49.20 Aligned_cols=48 Identities=21% Similarity=0.222 Sum_probs=33.1
Q ss_pred EEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 80 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 80 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
+++.||+|+|||..++-.+...+..+ .+++|+... +...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g---~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG---EPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC---CcEEEEECC-CCHHHHHHHHHHc
Confidence 68999999999988766665555433 378887653 4466666666554
No 258
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.0068 Score=54.51 Aligned_cols=143 Identities=12% Similarity=0.059 Sum_probs=73.0
Q ss_pred CCCcHHHHhhhhhhhc----C---CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhc
Q 015129 61 EKPSAIQQRGIVPFCK----G---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~----~---~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~ 133 (413)
..++|+|..++..+.+ | +-.++.||.|+||+..+...+. .+.+..... ++. ...++.+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~-~LlC~~~~~-----~~~-------c~~c~~~~~ 69 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAE-HVLASGPDP-----AAA-------QRTRQLIAA 69 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHH-HHhCCCCCC-----CCc-------chHHHHHhc
Confidence 4678999999988764 3 3589999999999987654443 333332110 110 011112222
Q ss_pred ccCcEEEEE--EcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCC
Q 015129 134 YLGVKVHAC--VGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP 211 (413)
Q Consensus 134 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~ 211 (413)
...-.+..+ ..+.... .....|.|-....+.+.+..... ....+++|||++|.+.... ...+.+.++.-+
T Consensus 70 g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~p~-~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp 141 (319)
T PRK08769 70 GTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALTPQ-YGIAQVVIVDPADAINRAA-CNALLKTLEEPS 141 (319)
T ss_pred CCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhCcc-cCCcEEEEeccHhhhCHHH-HHHHHHHhhCCC
Confidence 222222222 1110000 00012222222222222222222 2347899999999985443 555666667666
Q ss_pred CCceEEEEEeeCC
Q 015129 212 AKVQVGVFSATMP 224 (413)
Q Consensus 212 ~~~~~i~~SaT~~ 224 (413)
.+..+|++|..+.
T Consensus 142 ~~~~fiL~~~~~~ 154 (319)
T PRK08769 142 PGRYLWLISAQPA 154 (319)
T ss_pred CCCeEEEEECChh
Confidence 6777777665544
No 259
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.94 E-value=0.013 Score=50.63 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEE
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL 114 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv 114 (413)
..+++.|++|+|||..+...+......+ ..++++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEE
Confidence 4789999999999987654443333222 255555
No 260
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.93 E-value=0.0049 Score=66.15 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=44.6
Q ss_pred CCcHHHHhhhhhhhcC--CcEEEeCCCCCcchHHhHHHHHHccc--cCCCceeEEEEcCcHHHHHHH
Q 015129 62 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLD--YGLVQCQALVLAPTRELAQQI 124 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~--~~~li~~~tGsGKT~~~~~~~~~~~~--~~~~~~~~liv~P~~~l~~q~ 124 (413)
.+++-|..|+..++.+ +-++|.|..|+|||.+. -.++..+. ....+.+++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 7899999999999864 67899999999999874 22222221 112234788899987766554
No 261
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.92 E-value=0.008 Score=55.23 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=24.8
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
...++||+||+|.+.... ...+..++...+...++|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~~-~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALREDA-QQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHHH-HHHHHHHHHhccCCCeEEEEe
Confidence 345799999999874332 445556666655566665544
No 262
>CHL00181 cbbX CbbX; Provisional
Probab=96.92 E-value=0.0059 Score=54.33 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=17.9
Q ss_pred CCcEEEeCCCCCcchHHhHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~ 98 (413)
+.++++.||+|+|||.++-..+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 5678999999999998875443
No 263
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.91 E-value=0.0039 Score=53.65 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=16.6
Q ss_pred cCCcEEEeCCCCCcchHHhH
Q 015129 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~ 95 (413)
.+..+++.||+|+|||..+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35679999999999997654
No 264
>PRK08727 hypothetical protein; Validated
Probab=96.90 E-value=0.0048 Score=53.23 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=25.0
Q ss_pred ceEEEeccchHHhccC-cHHHHHHHHhhCCC-CceEEEEEeeCCHhH
Q 015129 183 IKMFVLDEADEMLSRG-FKDQIYDIFQLLPA-KVQVGVFSATMPPEA 227 (413)
Q Consensus 183 ~~~iV~DE~h~~~~~~-~~~~~~~~~~~~~~-~~~~i~~SaT~~~~~ 227 (413)
.+++|+||+|.+.... ....+..+++.... ..++++.|-.++.++
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 5789999999876432 23344444444322 344555555454433
No 265
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.90 E-value=0.0092 Score=56.61 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=25.3
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
+.+++.||+|+|||..+. ++...+....++.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH
Confidence 468999999999997753 44444443333447777654
No 266
>PRK06921 hypothetical protein; Provisional
Probab=96.90 E-value=0.019 Score=50.53 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=24.2
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
+.++++.|++|+|||..+.. +...+... .+..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~a-ia~~l~~~-~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTA-AANELMRK-KGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHhhh-cCceEEEEEH
Confidence 57899999999999977543 33333322 1236666553
No 267
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.89 E-value=0.0031 Score=54.93 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=33.7
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHH
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~ 129 (413)
++.++++.||+|+|||..+...+...+ .. + ..++.+++.+++.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~--g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KA--G-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-Hc--C-CeEEEEEHHHHHHHHHHHHh
Confidence 578999999999999988655444443 22 2 44555676777766555443
No 268
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.0073 Score=55.93 Aligned_cols=39 Identities=10% Similarity=0.272 Sum_probs=23.6
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
...+++|+||+|.+.... ...+.+.+...+....+++.|
T Consensus 118 ~~~kviIIDEa~~l~~~a-~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHS-FNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEEEc
Confidence 346899999999885433 233444445444555555544
No 269
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.87 E-value=0.0057 Score=60.11 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=25.0
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 219 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 219 (413)
..++++||||+|.+.... ...+.+.++.-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 347899999999886544 34455555655555555554
No 270
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.87 E-value=0.0078 Score=65.54 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=45.4
Q ss_pred CCCcHHHHhhhhhhhcC--CcEEEeCCCCCcchHHhHHHHHHcccc--CCCceeEEEEcCcHHHHHHH
Q 015129 61 EKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDY--GLVQCQALVLAPTRELAQQI 124 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~--~~~~~~~liv~P~~~l~~q~ 124 (413)
..+++-|..|+..++.+ +-++|.|..|+|||.+. -.+...+.. ...+.+++.++||..-+.++
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 36899999999999874 56899999999999774 333333321 22234788899998766544
No 271
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.87 E-value=0.0038 Score=53.96 Aligned_cols=20 Identities=10% Similarity=0.199 Sum_probs=16.4
Q ss_pred CCcEEEeCCCCCcchHHhHH
Q 015129 77 GLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~ 96 (413)
+..+++.||+|+|||..+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46789999999999976543
No 272
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.0049 Score=58.73 Aligned_cols=20 Identities=30% Similarity=0.175 Sum_probs=16.1
Q ss_pred cEEEeCCCCCcchHHhHHHH
Q 015129 79 DVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~ 98 (413)
.+++.||+|+|||..+-+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILA 57 (472)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46999999999998865443
No 273
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.008 Score=58.92 Aligned_cols=39 Identities=15% Similarity=0.357 Sum_probs=23.8
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
..++++||||+|.+....+ ..+.+.+..-+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~~a~-NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAF-NAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHH-HHHHHhcccCCCCeEEEEEE
Confidence 3578999999999865442 23334444444455555544
No 274
>PF13173 AAA_14: AAA domain
Probab=96.77 E-value=0.021 Score=44.04 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=25.8
Q ss_pred ceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCC
Q 015129 183 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 224 (413)
Q Consensus 183 ~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 224 (413)
-.+|++||+|.+ .++...+..+.... .+.++++ |++..
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~-~~~~ii~-tgS~~ 99 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNG-PNIKIIL-TGSSS 99 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhc-cCceEEE-Eccch
Confidence 478999999988 45667777777755 3455554 44433
No 275
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.77 E-value=0.016 Score=57.37 Aligned_cols=151 Identities=19% Similarity=0.224 Sum_probs=89.3
Q ss_pred HHHHHHCCCCCCcHHHHhhhhhhhcC--CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHH
Q 015129 52 LRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 52 ~~~l~~~~~~~~~~~Q~~~~~~i~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~ 129 (413)
...+..........-|.+.+..+.+. +-+++.|+-|=|||.+.=+++.. +.......+++|..|+.+-++.....+.
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~~~~~~iiVTAP~~~nv~~Lf~fa~ 282 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARLAGSVRIIVTAPTPANVQTLFEFAG 282 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHhcCCceEEEeCCCHHHHHHHHHHHH
Confidence 33444444444444555566666653 35899999999999876555522 2222214499999999999999888887
Q ss_pred HhhcccCcEEEEEEcC-cchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHh
Q 015129 130 ALGDYLGVKVHACVGG-TSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 208 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~ 208 (413)
+-....|+........ ...... ..+...|=+.+|+... .. -+++|+|||=.+ ....+.++..
T Consensus 283 ~~l~~lg~~~~v~~d~~g~~~~~---~~~~~~i~y~~P~~a~---------~~-~DllvVDEAAaI----plplL~~l~~ 345 (758)
T COG1444 283 KGLEFLGYKRKVAPDALGEIREV---SGDGFRIEYVPPDDAQ---------EE-ADLLVVDEAAAI----PLPLLHKLLR 345 (758)
T ss_pred HhHHHhCCccccccccccceeee---cCCceeEEeeCcchhc---------cc-CCEEEEehhhcC----ChHHHHHHHh
Confidence 7655555442221111 000000 0011224455554332 11 488999999765 4566666666
Q ss_pred hCCCCceEEEEEeeCC
Q 015129 209 LLPAKVQVGVFSATMP 224 (413)
Q Consensus 209 ~~~~~~~~i~~SaT~~ 224 (413)
.++ .+++|.|..
T Consensus 346 ~~~----rv~~sTTIh 357 (758)
T COG1444 346 RFP----RVLFSTTIH 357 (758)
T ss_pred hcC----ceEEEeeec
Confidence 654 788899975
No 276
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.77 E-value=0.023 Score=51.48 Aligned_cols=43 Identities=23% Similarity=0.206 Sum_probs=27.1
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 123 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 123 (413)
+.++++.||||+|||..+...+-..+..+ ..++++ +...+..+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g---~~V~y~-t~~~l~~~ 225 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG---KSVIYR-TADELIEI 225 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEE-EHHHHHHH
Confidence 57899999999999987654444333332 255554 43444443
No 277
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.76 E-value=0.0098 Score=58.51 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=25.1
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
...+++||||+|.+.... ...+.+.+...+....+|+.|
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 346899999999875433 334455555555566666655
No 278
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.74 E-value=0.014 Score=51.84 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=35.0
Q ss_pred hhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015129 72 VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 72 ~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~ 130 (413)
--+..|.-+++.|++|+|||..++..+...... .+.+++|+.--. -..++..++..
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~E~-~~~~~~~r~~~ 80 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISLEE-PVVRTARRLLG 80 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEccc-CHHHHHHHHHH
Confidence 345567889999999999998766555544433 123777776422 23444444433
No 279
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.05 Score=51.98 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=34.4
Q ss_pred cCcccCCCCHHHHHHHHH-CCC-CCCcHHHHhhhh------------hhhcCCcEEEeCCCCCcchHHhHHHHH
Q 015129 40 DSFDAMGLQENLLRGIYA-YGF-EKPSAIQQRGIV------------PFCKGLDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~-~~~-~~~~~~Q~~~~~------------~i~~~~~~li~~~tGsGKT~~~~~~~~ 99 (413)
......|+++.+.+.|-. ..- ............ .+..|+.+.++||+|+|||..+...+.
T Consensus 299 ~~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 299 ELMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred HHHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 455667888888877743 211 111111111111 123467889999999999987644433
No 280
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.73 E-value=0.0087 Score=58.16 Aligned_cols=106 Identities=14% Similarity=0.195 Sum_probs=56.6
Q ss_pred cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcC
Q 015129 79 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 158 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
.++|.|++|+|||..+. ++...+.....+.+++|+.. ..+..++...+..
T Consensus 316 pL~LyG~sGsGKTHLL~-AIa~~a~~~~~g~~V~Yita-eef~~el~~al~~---------------------------- 365 (617)
T PRK14086 316 PLFIYGESGLGKTHLLH-AIGHYARRLYPGTRVRYVSS-EEFTNEFINSIRD---------------------------- 365 (617)
T ss_pred cEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHh----------------------------
Confidence 48999999999997643 44444433223336666543 4444433322211
Q ss_pred CcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC-cHHHHHHHHhhCCC-CceEEEEEeeCCHh
Q 015129 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQLLPA-KVQVGVFSATMPPE 226 (413)
Q Consensus 159 ~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~-~~~~~~~~~~~~~~-~~~~i~~SaT~~~~ 226 (413)
...+.+.+. +.++++++|||+|.+.... ....+..+++.+.. +.++|+.|-.++.+
T Consensus 366 -----~~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 366 -----GKGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred -----ccHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 011122222 2236899999999876433 23445555554433 45666555444443
No 281
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.72 E-value=0.0094 Score=56.08 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEE
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL 114 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv 114 (413)
+.++++.||+|+|||.+.- .++..+........++++
T Consensus 55 ~~~~lI~G~~GtGKT~l~~-~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVK-KVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHhcCCcEEEEE
Confidence 3679999999999998753 333333322222345555
No 282
>PTZ00293 thymidine kinase; Provisional
Probab=96.72 E-value=0.0073 Score=50.41 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=28.3
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
|+--++.||++||||.-.+-.+......+. +++++-|...
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~---kv~~~kp~~D 43 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEK---KCVVIKYSKD 43 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCC---ceEEEEeccc
Confidence 455688999999999766555554444333 8888888643
No 283
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.72 E-value=0.0044 Score=58.32 Aligned_cols=146 Identities=16% Similarity=0.230 Sum_probs=79.7
Q ss_pred cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH-HHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHc
Q 015129 79 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE-LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 157 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
-.++.|+.|||||.+....++..+....++.+++++-++.. +...+...+.......++....-...... .......
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i~~~~~ 80 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EIKILNT 80 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EEEecCC
Confidence 35889999999998887777666655423458999989886 66666777776655545432111111100 0000011
Q ss_pred CCcEEEEcc-HHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCC--CCceEEEEEeeCCHhHHHHHHHh
Q 015129 158 GVHVVVGTP-GRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP--AKVQVGVFSATMPPEALEITRKF 234 (413)
Q Consensus 158 ~~~iii~T~-~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~--~~~~~i~~SaT~~~~~~~~~~~~ 234 (413)
+..|++..- +...+ +. ....++.+.+||+..+... .+..+...++ .....+++|.+|.....-....+
T Consensus 81 g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w~~~~f 151 (396)
T TIGR01547 81 GKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLHWVKKRF 151 (396)
T ss_pred CeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCccHHHHHH
Confidence 334555443 22211 11 1222689999999987443 3334433333 22224788888875433333344
Q ss_pred c
Q 015129 235 M 235 (413)
Q Consensus 235 ~ 235 (413)
.
T Consensus 152 ~ 152 (396)
T TIGR01547 152 I 152 (396)
T ss_pred H
Confidence 3
No 284
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.70 E-value=0.015 Score=57.03 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=26.4
Q ss_pred CCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 180 PDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 180 ~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
....+++||||+|.+.... ...+.+.++..+....+|+.|
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 3457899999999986443 344445555555666666655
No 285
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.0094 Score=58.58 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=25.4
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
..++++|+||+|.+.... ...+.+.++.-+....+|+.|
T Consensus 118 ~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 457899999999875443 345555555555566566544
No 286
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.69 E-value=0.013 Score=55.61 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=23.2
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
+.+++.||+|+|||..+. ++...+... +.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~--~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES--GGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc--CCCEEEeeH
Confidence 458999999999997654 333333322 236777653
No 287
>PLN03025 replication factor C subunit; Provisional
Probab=96.69 E-value=0.018 Score=52.37 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=25.2
Q ss_pred cceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 182 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 182 ~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
..+++|+||+|.+.... ...+.+.+...+....+++.+
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 46899999999975443 455566666655556555443
No 288
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.69 E-value=0.011 Score=52.58 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=17.3
Q ss_pred cCCcEEEeCCCCCcchHHhHH
Q 015129 76 KGLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~ 96 (413)
.+.++++.||+|+|||.++..
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHH
Confidence 356899999999999987643
No 289
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.68 E-value=0.015 Score=55.79 Aligned_cols=22 Identities=18% Similarity=0.025 Sum_probs=17.6
Q ss_pred CcEEEeCCCCCcchHHhHHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~ 99 (413)
+.+++.||.|+|||.++-+.+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999988755443
No 290
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.67 E-value=0.0077 Score=58.75 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=25.9
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
...+++|+||+|.+.... ...+.+.+...+....+|+.|
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 457899999999886543 344455555555566666655
No 291
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.0094 Score=53.72 Aligned_cols=137 Identities=9% Similarity=-0.011 Sum_probs=68.2
Q ss_pred CcHHHHhhhhhhhc----C---CcEEEeCCCCCcchHHhHHHHHHccccCCCc-eeEEEEcCcHHHHHHHHHHHHHhhcc
Q 015129 63 PSAIQQRGIVPFCK----G---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQ-CQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 63 ~~~~Q~~~~~~i~~----~---~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-~~~liv~P~~~l~~q~~~~~~~~~~~ 134 (413)
.+|+|...+..+.+ | +-.++.||.|.||+..+...+. .+.+..+. ... |. ....++.+...
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~-~llC~~~~~~~~---Cg-------~C~sC~~~~~g 71 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQ-WLMCQTPQGDQP---CG-------QCHSCHLFQAG 71 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHH-HHcCCCCCCCCC---CC-------CCHHHHHHhcC
Confidence 46777777777653 3 4578999999999987654443 33332211 010 11 11223333332
Q ss_pred cCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCc
Q 015129 135 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKV 214 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
....+..+.+.. +..|-|-....+.+.+.... .....+++|+|++|.+.... ...+-+.++.-+++.
T Consensus 72 ~HPD~~~i~p~~-----------~~~I~id~iR~l~~~~~~~~-~~g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~ 138 (325)
T PRK06871 72 NHPDFHILEPID-----------NKDIGVDQVREINEKVSQHA-QQGGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNT 138 (325)
T ss_pred CCCCEEEEcccc-----------CCCCCHHHHHHHHHHHhhcc-ccCCceEEEEechhhhCHHH-HHHHHHHhcCCCCCe
Confidence 223333332110 01111111111222222222 23347899999999985443 555666666655566
Q ss_pred eEEEEEeeC
Q 015129 215 QVGVFSATM 223 (413)
Q Consensus 215 ~~i~~SaT~ 223 (413)
.++++|..+
T Consensus 139 ~fiL~t~~~ 147 (325)
T PRK06871 139 YFLLQADLS 147 (325)
T ss_pred EEEEEECCh
Confidence 555555444
No 292
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.65 E-value=0.012 Score=56.73 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=26.6
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
...+++|+||+|.+.... ...+.+.+...++...+|+.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 457899999999885443 345555556656666666655
No 293
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.63 E-value=0.0085 Score=58.45 Aligned_cols=23 Identities=17% Similarity=0.021 Sum_probs=18.0
Q ss_pred CcEEEeCCCCCcchHHhHHHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQ 100 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~ 100 (413)
+.+|+.+|.|+|||.++...+..
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999987655443
No 294
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.63 E-value=0.011 Score=55.70 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=63.1
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 156 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
...++++|++|+|||.++...+.. +... +.+++++....-- ....+.+..++...+..+.......
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~-L~~~--g~kV~lV~~D~~R-~aa~eQL~~la~~~gvp~~~~~~~~---------- 160 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARY-FKKK--GLKVGLVAADTYR-PAAYDQLKQLAEKIGVPFYGDPDNK---------- 160 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH-HHHc--CCeEEEecCCCCC-HHHHHHHHHHHHHcCCcEEecCCcc----------
Confidence 346889999999999886544433 3222 2255554432110 0122333333333343322111000
Q ss_pred cCCcEEEEccHH-HHHHHHcCCCCCCcceEEEeccchHHh-ccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHh
Q 015129 157 AGVHVVVGTPGR-VFDMLRRQSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKF 234 (413)
Q Consensus 157 ~~~~iii~T~~~-l~~~~~~~~~~~~~~~~iV~DE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~ 234 (413)
.|.. +.+.+... ...++||+|.+-+.. +...-..+..+.....+..-++.++|+...+.......+
T Consensus 161 --------d~~~i~~~al~~~----~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 161 --------DAVEIAKEGLEKF----KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred --------CHHHHHHHHHHHh----hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 1111 12222221 113789999885432 122233445555555555567777887766555555444
No 295
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.017 Score=55.89 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=25.9
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
...+++|+||+|.+.... ...+.+.+...+....+|+.|
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 346899999999976543 345555556655566666555
No 296
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.62 E-value=0.009 Score=58.00 Aligned_cols=22 Identities=23% Similarity=0.036 Sum_probs=17.4
Q ss_pred CcEEEeCCCCCcchHHhHHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~ 99 (413)
+..++.||.|+|||..+...+.
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999988755443
No 297
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.014 Score=56.76 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=25.2
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
..++++|+||+|.+.... ...+.+.+...+....+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 457899999999886543 234444555555566666655
No 298
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.57 E-value=0.017 Score=54.26 Aligned_cols=22 Identities=23% Similarity=0.061 Sum_probs=17.3
Q ss_pred CcEEEeCCCCCcchHHhHHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~ 99 (413)
+..+++||+|+|||.++...+.
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred eeEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999988755443
No 299
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.57 E-value=0.0068 Score=55.12 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=26.2
Q ss_pred ceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEe
Q 015129 183 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 221 (413)
Q Consensus 183 ~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 221 (413)
.++||+||+|.+........+..++...+...++++.|.
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 579999999987333334566666676666676665443
No 300
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.55 E-value=0.073 Score=52.12 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=43.3
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcc
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~ 134 (413)
+.+-.++.+|-|-|||.+..+.+...+.. .+.+++|.+|...-+.+..+.+......
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f--~Gi~IlvTAH~~~ts~evF~rv~~~le~ 242 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISF--LEIDIVVQAQRKTMCLTLYNRVETVVHA 242 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHh--cCCeEEEECCChhhHHHHHHHHHHHHHH
Confidence 34567889999999998876555544431 2359999999999999988888777653
No 301
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.53 E-value=0.0065 Score=61.87 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=57.2
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC-CCceeEEEEcCcHHHHHHHHHHHHHhhc
Q 015129 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-LVQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~liv~P~~~l~~q~~~~~~~~~~ 133 (413)
..+++-|.+++.+ ...+++|.|.+|||||.+...-+.+.+... ....++|+++-|+.-+.++.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3689999999976 357799999999999999887777776542 2334899999999999999998887654
No 302
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.52 E-value=0.017 Score=52.64 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=27.5
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEe
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 221 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 221 (413)
....+||+|||+.+.... ...+.+.+..-+.+..+++.|-
T Consensus 108 ~~~kviiidead~mt~~A-~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTEDA-ANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHHH-HHHHHHHhccCCCCeEEEEEcC
Confidence 557899999999986533 5566666666666666665554
No 303
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.50 E-value=0.0097 Score=57.26 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=15.9
Q ss_pred cEEEeCCCCCcchHHhHHHH
Q 015129 79 DVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~ 98 (413)
-+++.||+|+|||.++...+
T Consensus 38 a~Lf~GppGtGKTTlA~~lA 57 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIA 57 (504)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35999999999998865443
No 304
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.50 E-value=0.044 Score=55.19 Aligned_cols=41 Identities=10% Similarity=0.407 Sum_probs=23.4
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCC-CCceEEEEEee
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AKVQVGVFSAT 222 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT 222 (413)
....+||+||+|.+.... ...+..+++... ...+++++..+
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHhhccCCeEEEEEec
Confidence 345789999999987542 344444444321 23444444444
No 305
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.46 E-value=0.011 Score=57.28 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=78.2
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhccc--CcEEEEEEcCcchHHHHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL--GVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (413)
+-.++..|--.|||+... +++..+.....+.+++|++|.+..++..++++....... +..+....| ... .-.+
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i~f 329 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SFSF 329 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EEEe
Confidence 567889999999998765 454444444445599999999999999999888765421 111111111 110 0001
Q ss_pred HcC--CcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCC-CCceEEEEEeeCC
Q 015129 156 QAG--VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AKVQVGVFSATMP 224 (413)
Q Consensus 156 ~~~--~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~ 224 (413)
.++ ..|.+++. ...+...-..++++|+|||+.+.+..+. .++..+. .++++|++|.|-.
T Consensus 330 ~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~al~----~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 330 PDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDAVQ----TIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred cCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHHHH----HHHHHHhccCccEEEEecCCC
Confidence 111 23444421 1122233346899999999988554433 3333222 3778899998854
No 306
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.42 E-value=0.023 Score=55.69 Aligned_cols=21 Identities=24% Similarity=0.120 Sum_probs=16.7
Q ss_pred CcEEEeCCCCCcchHHhHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~ 98 (413)
+-.|++||.|+|||.++-..+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 447889999999998875544
No 307
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.031 Score=55.08 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=17.9
Q ss_pred CcEEEeCCCCCcchHHhHHHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQ 100 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~ 100 (413)
+..|++||.|.|||.++...+..
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lAk~ 61 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFAKA 61 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999887554433
No 308
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.40 E-value=0.014 Score=49.05 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.0
Q ss_pred CcEEEeCCCCCcchHHhH
Q 015129 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~ 95 (413)
.++++.||+|.|||..+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 478999999999997763
No 309
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.38 E-value=0.041 Score=47.30 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=34.3
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
+..|.-+++.+++|+|||..++..+...+..+ .++++++.. +-..+..+.+..+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCC-CCHHHHHHHHHHh
Confidence 34577889999999999987654444433333 377888753 3344555555443
No 310
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.37 E-value=0.012 Score=58.25 Aligned_cols=135 Identities=15% Similarity=0.097 Sum_probs=75.3
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 156 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
.+=++|++|.|+|||....-+.. . ...+..+.++.-... ..+-.+.++.+...++..+-..++. . . ....
T Consensus 37 ~RL~li~APAGfGKttl~aq~~~-~---~~~~~~v~Wlslde~-dndp~rF~~yLi~al~~~~p~~~~~-a---~-~l~q 106 (894)
T COG2909 37 YRLILISAPAGFGKTTLLAQWRE-L---AADGAAVAWLSLDES-DNDPARFLSYLIAALQQATPTLGDE-A---Q-TLLQ 106 (894)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHH-h---cCcccceeEeecCCc-cCCHHHHHHHHHHHHHHhCccccHH-H---H-HHHH
Confidence 35579999999999976543332 1 223336666654322 3344444444433222111111111 1 1 1111
Q ss_pred cCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCC
Q 015129 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 224 (413)
Q Consensus 157 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 224 (413)
.+..+. -..+...+...--...+.=++|+|+.|.+.+......+..+++..|++..+++.|-+-+
T Consensus 107 --~~~~~~-l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 107 --KHQYVS-LESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred --hccccc-HHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 111111 12222222221112223358999999999999888999999999999999999888755
No 311
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.36 E-value=0.016 Score=52.79 Aligned_cols=140 Identities=11% Similarity=-0.005 Sum_probs=71.0
Q ss_pred CCcHHHHhhhhhhhc----C---CcEEEeCCCCCcchHHhHHHHHHccccCCC-ceeEEEEcCcHHHHHHHHHHHHHhhc
Q 015129 62 KPSAIQQRGIVPFCK----G---LDVIQQAQSGTGKTATFCSGILQQLDYGLV-QCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~----~---~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~liv~P~~~l~~q~~~~~~~~~~ 133 (413)
.++|+|...+..+.+ | +-.++.||.|.||+..+...+. .+.+..+ +... |- ....++.+..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~-~LlC~~~~~~~~---Cg-------~C~sC~~~~~ 70 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSR-WLMCQQPQGHKS---CG-------HCRGCQLMQA 70 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHH-HHcCCCCCCCCC---CC-------CCHHHHHHHc
Confidence 357888888888753 3 4578999999999988654443 3433221 1111 11 1122333332
Q ss_pred ccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCC
Q 015129 134 YLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAK 213 (413)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~ 213 (413)
...-.+..+.+... +..|-|-....+.+.+.... .....+++|+|++|.+.... ...+-+.++.=+.+
T Consensus 71 g~HPD~~~i~p~~~----------~~~I~idqiR~l~~~~~~~~-~~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~ 138 (334)
T PRK07993 71 GTHPDYYTLTPEKG----------KSSLGVDAVREVTEKLYEHA-RLGGAKVVWLPDAALLTDAA-ANALLKTLEEPPEN 138 (334)
T ss_pred CCCCCEEEEecccc----------cccCCHHHHHHHHHHHhhcc-ccCCceEEEEcchHhhCHHH-HHHHHHHhcCCCCC
Confidence 32333333322111 01121222222222222222 23457899999999885443 45555566665556
Q ss_pred ceEEEEEeeCC
Q 015129 214 VQVGVFSATMP 224 (413)
Q Consensus 214 ~~~i~~SaT~~ 224 (413)
..++++|.-+.
T Consensus 139 t~fiL~t~~~~ 149 (334)
T PRK07993 139 TWFFLACREPA 149 (334)
T ss_pred eEEEEEECChh
Confidence 65666655543
No 312
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.36 E-value=0.0035 Score=48.59 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=13.3
Q ss_pred EEEeCCCCCcchHHh
Q 015129 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~li~~~tGsGKT~~~ 94 (413)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999775
No 313
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.36 E-value=0.074 Score=46.68 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=66.2
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC-cH--HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP-TR--ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 153 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P-~~--~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
+..+.+.+++|+|||..+...+...... +.++.++.. +. ..+.||...... .++.+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~~------------ 135 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQDYVKT----IGFEVIA------------ 135 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHHhhh----cCceEEe------------
Confidence 4688999999999998765443332211 124444433 22 344454433222 2332211
Q ss_pred HHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhc-cCcHHHHHHHHhhCCCCceEEEEEeeCCH-hHHHHH
Q 015129 154 ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQLLPAKVQVGVFSATMPP-EALEIT 231 (413)
Q Consensus 154 ~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~~ 231 (413)
..+++.+.+.+..-. ....+++|++|-+=+... ...-..+..+.....+...++.++||... +..+..
T Consensus 136 ---------~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~ 205 (270)
T PRK06731 136 ---------VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 205 (270)
T ss_pred ---------cCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH
Confidence 123444444332210 123478999998865421 11233344444444444457779998754 555555
Q ss_pred HHh
Q 015129 232 RKF 234 (413)
Q Consensus 232 ~~~ 234 (413)
+.|
T Consensus 206 ~~f 208 (270)
T PRK06731 206 TNF 208 (270)
T ss_pred HHh
Confidence 555
No 314
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.048 Score=50.93 Aligned_cols=127 Identities=19% Similarity=0.144 Sum_probs=60.3
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
.|..+.++||+|+|||.+....+...........-.++.+++.-. -..+.+..++...++.+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri--galEQL~~~a~ilGvp~~~-------------- 253 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI--GGHEQLRIYGKLLGVSVRS-------------- 253 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch--hHHHHHHHHHHHcCCceec--------------
Confidence 356789999999999987643333222222222234455554222 1222233343333443321
Q ss_pred HcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhc-cCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHH
Q 015129 156 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALE 229 (413)
Q Consensus 156 ~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 229 (413)
+.++..+...+.. +.+.+.+++|.+-+.-. ......+..+.....+...++.++||.......
T Consensus 254 -------v~~~~dl~~al~~----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~ 317 (420)
T PRK14721 254 -------IKDIADLQLMLHE----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD 317 (420)
T ss_pred -------CCCHHHHHHHHHH----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH
Confidence 2223333222221 34467899998632211 111233333322222334578899997665433
No 315
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.32 E-value=0.012 Score=54.83 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=25.3
Q ss_pred cHHHHhhhhhhhcCCcEEEeCCCCCcchHHhH
Q 015129 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 64 ~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~ 95 (413)
.......+..+..++++++.||+|+|||..+-
T Consensus 181 e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 181 ETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 33445566677789999999999999998764
No 316
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.31 E-value=0.026 Score=55.17 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=16.6
Q ss_pred CcEEEeCCCCCcchHHhHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~ 98 (413)
+..++.||.|+|||.++...+
T Consensus 39 hayLf~Gp~G~GKTt~Ar~lA 59 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARAFA 59 (563)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347999999999998865443
No 317
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.31 E-value=0.054 Score=54.54 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=74.7
Q ss_pred EEEeccccchHHHHHHHHHh--hcccceEEEEccHHHHHHHHHHhhhC-CCeeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 015129 257 YVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333 (413)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 333 (413)
.....+...|.......+.. ..++++||.+|+++.+..+.+.|++. +..+..+||+++..+|.+.+....+|+.+|+
T Consensus 166 Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IV 245 (679)
T PRK05580 166 LLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVV 245 (679)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 33444555666555444332 13568999999999999999999764 7789999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCcEEEEccC
Q 015129 334 ITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 334 i~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
|+|..... +.+.++..+|..+.
T Consensus 246 VgTrsal~-~p~~~l~liVvDEe 267 (679)
T PRK05580 246 IGARSALF-LPFKNLGLIIVDEE 267 (679)
T ss_pred EeccHHhc-ccccCCCEEEEECC
Confidence 99984322 45667888876653
No 318
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.29 E-value=0.007 Score=53.77 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=44.7
Q ss_pred CCCCCcHHHHhhhhhhhcCC-cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHH
Q 015129 59 GFEKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 122 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~i~~~~-~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 122 (413)
.+..+++-|...+..+.+.+ +++++|.||||||.. +.++...+.... +++.+=.+.+|..
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~~e---RvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDSDE---RVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCCcc---cEEEEeehhhhcc
Confidence 45578888988888877765 999999999999975 444444444333 8888888877643
No 319
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.26 E-value=0.032 Score=50.07 Aligned_cols=25 Identities=12% Similarity=0.015 Sum_probs=18.9
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHc
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQ 101 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~ 101 (413)
++++++.||+|+|||..+...+-..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l 180 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANEL 180 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999998765444333
No 320
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.26 E-value=0.016 Score=49.93 Aligned_cols=86 Identities=26% Similarity=0.368 Sum_probs=63.0
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCc-chHHHHHHHH-cCCcEEEEccHHHHHHHHcCCCCCCcce
Q 015129 107 VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGT-SVREDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIK 184 (413)
Q Consensus 107 ~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~iii~T~~~l~~~~~~~~~~~~~~~ 184 (413)
..+.+||||.+.--+.++.+.++.+... +..+.-+.... ...++...+. ...+|.|+||+++..+++.+.+.++++.
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 3568999999888888888888876321 22333333222 3444444444 4789999999999999999999999999
Q ss_pred EEEeccchH
Q 015129 185 MFVLDEADE 193 (413)
Q Consensus 185 ~iV~DE~h~ 193 (413)
.||+|--|.
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999998773
No 321
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.25 E-value=0.017 Score=49.64 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=36.2
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHcccc-CCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
.|..+++.|++|+|||..++-.+.+.+.+ +. +++|++-. +-..++.+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge---~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE---KVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESS-S-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC---cEEEEEec-CCHHHHHHHHHHc
Confidence 46789999999999998877767666665 54 78887753 3456666666654
No 322
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.24 E-value=0.042 Score=50.78 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=31.0
Q ss_pred cceEEEeccchHHhcc-CcHHHHHHHHhhCCC-CceEEEEEeeCCHhHH
Q 015129 182 YIKMFVLDEADEMLSR-GFKDQIYDIFQLLPA-KVQVGVFSATMPPEAL 228 (413)
Q Consensus 182 ~~~~iV~DE~h~~~~~-~~~~~~~~~~~~~~~-~~~~i~~SaT~~~~~~ 228 (413)
+++++++|++|.+... .....+..+++.+.. +.|+++.|..+|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 4789999999988754 345556666666554 3467766666665443
No 323
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.24 E-value=0.0084 Score=53.91 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=38.6
Q ss_pred CcHHHHhhhhhhh-cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHH
Q 015129 63 PSAIQQRGIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120 (413)
Q Consensus 63 ~~~~Q~~~~~~i~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 120 (413)
+++.|...+..+. .+.+++++|+||||||... -+++..+....+..+++.+=...+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCccc
Confidence 4566766666544 4778999999999999764 5555555433333477777766665
No 324
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.20 E-value=0.045 Score=45.52 Aligned_cols=39 Identities=8% Similarity=0.229 Sum_probs=23.7
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
....+||+||+|.+.... ...+...++..++...+++++
T Consensus 95 ~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred CCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 457899999999985433 334445555544444444443
No 325
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.20 E-value=0.0074 Score=52.42 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=22.8
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCC
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLV 107 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~ 107 (413)
.=+++.||||||||.+ +.+++.++.....
T Consensus 126 GLILVTGpTGSGKSTT-lAamId~iN~~~~ 154 (353)
T COG2805 126 GLILVTGPTGSGKSTT-LAAMIDYINKHKA 154 (353)
T ss_pred ceEEEeCCCCCcHHHH-HHHHHHHHhccCC
Confidence 3479999999999977 6778887776554
No 326
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.19 E-value=0.0056 Score=65.16 Aligned_cols=94 Identities=26% Similarity=0.400 Sum_probs=75.9
Q ss_pred ceEEEEccHHHHHHHHHHhhhCCC-eeEEecCCCC-----------HHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCC
Q 015129 281 QSVIFVNTRRKVDWLTDKMRSRDH-TVSATHGDMD-----------QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 281 ~~lif~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~-----------~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
..++|++.+..+....+.+...+. .+..+.|.+. ...+.+++..|....+++|++|+++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 468999999988888888876532 2223444321 2336788889999999999999999999999999
Q ss_pred cEEEEccCCCChhhHHHhhhhccCCC
Q 015129 349 SLVINYDLPTQPENYLHRIGRSGRFG 374 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~g 374 (413)
+-++.++.|.....|+|..||+-+.+
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999996653
No 327
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.18 E-value=0.026 Score=52.41 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=51.2
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhh
Q 015129 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~ 132 (413)
.+-..|.++.-..-.|.. .|.|-.|||||.+...-+. .+....+.-++++.+-|+.|+.++.+...+++
T Consensus 162 nfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa-~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 162 NFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAA-ELHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred cccchhheeeeecCCchh-hhhcccCCCchhHHHHHHH-HHhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 445567777655555655 6788899999987544333 45556666799999999999999988887765
No 328
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.18 E-value=0.11 Score=48.64 Aligned_cols=57 Identities=14% Similarity=0.040 Sum_probs=30.5
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC-c-HHHHHHHHHHHHHhhcccCcEEE
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP-T-RELAQQIEKVMRALGDYLGVKVH 140 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P-~-~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
.-++++|++|+|||.++.-.+...... +.++++++. + +.-+ .++++.++...++.+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~---G~kV~lV~~D~~R~aA---~eQLk~~a~~~~vp~~ 159 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRK---GFKPCLVCADTFRAGA---FDQLKQNATKARIPFY 159 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEcCcccchhH---HHHHHHHhhccCCeEE
Confidence 357899999999997765444332222 226555544 2 2222 2334444444455444
No 329
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.17 E-value=0.011 Score=57.65 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=76.2
Q ss_pred CCcHHHHhhhhhhhcC--CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHH-HHHHHhhcccCcE
Q 015129 62 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIE-KVMRALGDYLGVK 138 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~-~~~~~~~~~~~~~ 138 (413)
..+|+|.+.+..+... +.+.+..++-+|||.+.+..+...+.... + .++++.||...+.++. ..+..+......-
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P-~-~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l 93 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDP-G-PMLYVQPTDDAAKDFSKERLDPMIRASPVL 93 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCC-C-CEEEEEEcHHHHHHHHHHHHHHHHHhCHHH
Confidence 5789999999998774 68999999999999976665555554443 3 8999999999999876 4555544322111
Q ss_pred EEEEEc-----CcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHh
Q 015129 139 VHACVG-----GTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML 195 (413)
Q Consensus 139 ~~~~~~-----~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~ 195 (413)
-..+.. +.+. ...+.+ .+..+.++...+- ..+.-..++++++||++.+.
T Consensus 94 ~~~~~~~~~~~~~~t-~~~k~f-~gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 94 RRKLSPSKSRDSGNT-ILYKRF-PGGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHhCchhhcccCCc-hhheec-CCCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 111111 0110 111111 2344555543222 12233447899999999874
No 330
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.16 E-value=0.041 Score=53.20 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=70.8
Q ss_pred cccchHHHHHHHHHh--hcccceEEEEccHHHHHHHHHHhhhC-CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 015129 262 KEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 338 (413)
Q Consensus 262 ~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~ 338 (413)
+...|......++.. ..++++|+.+|+...+..+.+.|++. +..+..+||+++..+|.+.+....+|+.+|+|+|..
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrs 85 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRS 85 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChH
Confidence 344555554444432 24568999999999999999999764 677899999999999999999999999999999974
Q ss_pred CCCCCCCCCCcEEEEcc
Q 015129 339 LARGIDVQQVSLVINYD 355 (413)
Q Consensus 339 ~~~G~d~~~~~~vi~~~ 355 (413)
.-. ..++++..||..+
T Consensus 86 alf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 86 ALF-LPFKNLGLIIVDE 101 (505)
T ss_pred HHc-CcccCCCEEEEEC
Confidence 322 3466788877654
No 331
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.16 E-value=0.066 Score=48.71 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=24.9
Q ss_pred cceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 182 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 182 ~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
..++|++||+|.+.... ...+..++...+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 35799999999875432 345555666656666666654
No 332
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.16 E-value=0.027 Score=50.68 Aligned_cols=140 Identities=10% Similarity=0.024 Sum_probs=70.5
Q ss_pred CCcHHHHhhhhhhhc----C---CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcc
Q 015129 62 KPSAIQQRGIVPFCK----G---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~----~---~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~ 134 (413)
.++|+|...+..+.+ + +-.++.||.|.||+..+...+. .+.+...... -|.. ...++.+...
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~-~llC~~~~~~---~Cg~-------C~sC~~~~~g 71 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSR-ALLCQNYQSE---ACGF-------CHSCELMQSG 71 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHH-HHcCCCCCCC---CCCC-------CHHHHHHHcC
Confidence 467888888877664 3 4589999999999977654443 3333221111 1111 1223333222
Q ss_pred cCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCc
Q 015129 135 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKV 214 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
....+..+..... +..|-|-....+.+.+... ......+++|||++|.+.... ...+-+.++.-+++.
T Consensus 72 ~HPD~~~i~p~~~----------~~~I~vdqiR~l~~~~~~~-~~~~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t 139 (319)
T PRK06090 72 NHPDLHVIKPEKE----------GKSITVEQIRQCNRLAQES-SQLNGYRLFVIEPADAMNESA-SNALLKTLEEPAPNC 139 (319)
T ss_pred CCCCEEEEecCcC----------CCcCCHHHHHHHHHHHhhC-cccCCceEEEecchhhhCHHH-HHHHHHHhcCCCCCe
Confidence 2233333322110 0111111111122222211 223457899999999985443 455666666655666
Q ss_pred eEEEEEeeCC
Q 015129 215 QVGVFSATMP 224 (413)
Q Consensus 215 ~~i~~SaT~~ 224 (413)
.+|++|..+.
T Consensus 140 ~fiL~t~~~~ 149 (319)
T PRK06090 140 LFLLVTHNQK 149 (319)
T ss_pred EEEEEECChh
Confidence 6666665554
No 333
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.14 E-value=0.015 Score=53.52 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=28.6
Q ss_pred CCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCC
Q 015129 180 PDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 224 (413)
Q Consensus 180 ~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 224 (413)
.....++||||+|.+.... ...+.+.++.-+....++++|..+.
T Consensus 139 ~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 139 EGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred cCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECCch
Confidence 3457899999999874333 4555666666555666666655543
No 334
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.11 E-value=0.016 Score=52.58 Aligned_cols=41 Identities=17% Similarity=-0.006 Sum_probs=29.7
Q ss_pred CcHHHHhhhhhhhc-----CCcEEEeCCCCCcchHHhHHHHHHcccc
Q 015129 63 PSAIQQRGIVPFCK-----GLDVIQQAQSGTGKTATFCSGILQQLDY 104 (413)
Q Consensus 63 ~~~~Q~~~~~~i~~-----~~~~li~~~tGsGKT~~~~~~~~~~~~~ 104 (413)
++|+|...+..+.+ .+..++.||.|.||+..+...+ +.+.+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A-~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA-QGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH-HHHcC
Confidence 46888888888765 2467899999999998775444 34443
No 335
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.10 E-value=0.066 Score=54.02 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=75.9
Q ss_pred EEEEeccccchHHHH-HHHHHh-hcccceEEEEccHHHHHHHHHHhhh----CCCeeEEecCCCCHHHHHHHHHHHhcCC
Q 015129 256 FYVNVEKEEWKLETL-CDLYET-LAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGS 329 (413)
Q Consensus 256 ~~~~~~~~~~~~~~l-~~~~~~-~~~~~~lif~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 329 (413)
.....+....|.... ..++.. ..+.++++.+|++.-|...++.++. .+..+..++|+++..+|.++++.+.+|+
T Consensus 285 ~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~ 364 (681)
T PRK10917 285 RLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE 364 (681)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC
Confidence 444555555565433 222222 2456899999999888877766654 4688999999999999999999999999
Q ss_pred CcEEEEcC-CCCCCCCCCCCcEEEEccC
Q 015129 330 SRVLITTD-LLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 330 ~~vli~t~-~~~~G~d~~~~~~vi~~~~ 356 (413)
++|+|+|. .+...+.++++.+||....
T Consensus 365 ~~IvVgT~~ll~~~v~~~~l~lvVIDE~ 392 (681)
T PRK10917 365 ADIVIGTHALIQDDVEFHNLGLVIIDEQ 392 (681)
T ss_pred CCEEEchHHHhcccchhcccceEEEech
Confidence 99999997 4566777888888886543
No 336
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.087 Score=48.95 Aligned_cols=126 Identities=15% Similarity=0.162 Sum_probs=61.0
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc-Cc-HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA-PT-RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~-P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
.-++++||+|+|||.++.-.+....... +.++.++. .+ +..+.+ .++.++...++.+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~--G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~-------------- 284 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHM--GKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP-------------- 284 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEecccchhhhHHH---HHHHHHHhcCCCeee--------------
Confidence 3478999999999988765554332211 11444333 33 222222 333333333332211
Q ss_pred HcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHh-ccCcHHHHHHHHhhCC---CCceEEEEEeeCCHh-HHHH
Q 015129 156 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLP---AKVQVGVFSATMPPE-ALEI 230 (413)
Q Consensus 156 ~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~-~~~~~~~~~~~~~~~~---~~~~~i~~SaT~~~~-~~~~ 230 (413)
+..+..+...+.. .++++|++|=+-+.. +......+..+..... +...++.++||...+ ..+.
T Consensus 285 -------~~~~~~l~~~l~~-----~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~ 352 (432)
T PRK12724 285 -------VKDIKKFKETLAR-----DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV 352 (432)
T ss_pred -------hHHHHHHHHHHHh-----CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH
Confidence 0112233333331 346889999655421 1222344444444432 234578899998874 4334
Q ss_pred HHHh
Q 015129 231 TRKF 234 (413)
Q Consensus 231 ~~~~ 234 (413)
...|
T Consensus 353 ~~~f 356 (432)
T PRK12724 353 LKAY 356 (432)
T ss_pred HHHh
Confidence 3433
No 337
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.09 E-value=0.0095 Score=53.72 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=38.0
Q ss_pred CcHHHHhhhhh-hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHH
Q 015129 63 PSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120 (413)
Q Consensus 63 ~~~~Q~~~~~~-i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 120 (413)
+.+.|...+.. +..+++++++|+||||||.. +.+++..+....+..+++++-.+.++
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 45667777765 44578999999999999955 45555443222333477777777665
No 338
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.09 E-value=0.024 Score=49.41 Aligned_cols=40 Identities=10% Similarity=0.186 Sum_probs=24.6
Q ss_pred cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015129 79 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
-.+|-||||+||+-.. -.++..-.-....-.+++|+|.+.
T Consensus 89 I~~VYGPTG~GKSqLl-RNLis~~lI~P~PETVfFItP~~~ 128 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLL-RNLISCQLIQPPPETVFFITPQKD 128 (369)
T ss_pred EEEEECCCCCCHHHHH-HHhhhcCcccCCCCceEEECCCCC
Confidence 4688999999999532 222111111222238999999875
No 339
>PHA00729 NTP-binding motif containing protein
Probab=96.09 E-value=0.078 Score=44.89 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=37.0
Q ss_pred CcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhcc-CcH----HHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHH
Q 015129 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFK----DQIYDIFQLLPAKVQVGVFSATMPPEALEITRK 233 (413)
Q Consensus 159 ~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~-~~~----~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 233 (413)
...++.+.+.+...+..........+++|+||+---... .+. .....+...+.+...++.++...+.++...++.
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 456666666666655432222234578999994321111 111 122223333344455666666655555555444
No 340
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.07 E-value=0.052 Score=49.64 Aligned_cols=120 Identities=17% Similarity=0.177 Sum_probs=58.4
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc-CcHH--HHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA-PTRE--LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 153 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~-P~~~--l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
++.++++||+|+|||.++.-.+......+ .++.++. .+.- -+.| |+.+....++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g---~~V~lItaDtyR~gAveQ----Lk~yae~lgvpv~------------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQN---RTVGFITTDTFRSGAVEQ----FQGYADKLDVELI------------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCccCccHHHH----HHHHhhcCCCCEE-------------
Confidence 56789999999999987655444332322 2444443 3321 1333 3333333333221
Q ss_pred HHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHh-ccCcHHHHHHHHhhCCCCceEEEEEeeCCH
Q 015129 154 ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFSATMPP 225 (413)
Q Consensus 154 ~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 225 (413)
...+|+.+...+.... ...++++|++|=+-+.. +...-..+..+.....+..-++.+||+...
T Consensus 266 --------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~ 329 (407)
T PRK12726 266 --------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS 329 (407)
T ss_pred --------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH
Confidence 1234555544443211 11336888888775432 111223334444444444435566765543
No 341
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.06 E-value=0.035 Score=62.18 Aligned_cols=62 Identities=29% Similarity=0.299 Sum_probs=44.1
Q ss_pred CCCcHHHHhhhhhhhcC--CcEEEeCCCCCcchHHhH---HHHHHccccCCCceeEEEEcCcHHHHHHH
Q 015129 61 EKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFC---SGILQQLDYGLVQCQALVLAPTRELAQQI 124 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~--~~~li~~~tGsGKT~~~~---~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 124 (413)
..+++-|..|+..++.+ +-++|.|+.|+|||.+.- -++...+. ..+.+++.++||..-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~--~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE--SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH--hcCCeEEEEeChHHHHHHH
Confidence 37899999999998864 556889999999997751 22322222 2234788899987765554
No 342
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.05 E-value=0.026 Score=50.42 Aligned_cols=16 Identities=38% Similarity=0.437 Sum_probs=14.4
Q ss_pred cEEEeCCCCCcchHHh
Q 015129 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~ 94 (413)
..|+++|+|+|||..+
T Consensus 164 SmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLA 179 (554)
T ss_pred ceEEecCCCCchHHHH
Confidence 6899999999999765
No 343
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.2 Score=46.18 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=19.2
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccC
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYG 105 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~ 105 (413)
.|+++-|+||+|||.+.- .+...+...
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHHhh
Confidence 579999999999998753 344444433
No 344
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.072 Score=46.35 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=34.2
Q ss_pred hhhhhcCC-----cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 71 IVPFCKGL-----DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 71 ~~~i~~~~-----~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
+|++..|+ .+++-+|+|+||++.+-..+- ..+ ..++-+.+..|+..|.-+-.++
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVAT------EAn-STFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVAT------EAN-STFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHh------hcC-CceEEeehHHHHHHHhccHHHH
Confidence 34555554 589999999999976522211 112 6677777778877665544443
No 345
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.02 E-value=0.016 Score=51.97 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=37.7
Q ss_pred CcHHHHhhhhhh-hcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHH
Q 015129 63 PSAIQQRGIVPF-CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120 (413)
Q Consensus 63 ~~~~Q~~~~~~i-~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 120 (413)
+.+.|...+..+ ..+++++++|+||||||..+ .+++..+....+..+++.+=...++
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhh
Confidence 344455555554 44779999999999999764 5555555443333478887777775
No 346
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.02 E-value=0.039 Score=52.46 Aligned_cols=51 Identities=22% Similarity=0.192 Sum_probs=33.9
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
|.-+++.+++|+|||...+..+...... +.+++|+.- .+...|+..+.+++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEc-cccHHHHHHHHHHc
Confidence 5668999999999998766555443322 338888875 34455666555554
No 347
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.00 E-value=0.036 Score=52.55 Aligned_cols=146 Identities=12% Similarity=-0.000 Sum_probs=85.0
Q ss_pred CCcHHHHhhhhhhhc------C----CcEEEeCCCCCcchHHhH-HHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015129 62 KPSAIQQRGIVPFCK------G----LDVIQQAQSGTGKTATFC-SGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~------~----~~~li~~~tGsGKT~~~~-~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~ 130 (413)
.+-|+|..++..+.- | +-.+|..|-+-|||..+. +.....+.....+..+.|++|+.+-+.+.+..++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 678999999988872 2 357999999999996553 22333333445666999999999999888888887
Q ss_pred hhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHH---HHHHHc--CCCCCCcceEEEeccchHHhccCcHHHHHH
Q 015129 131 LGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRV---FDMLRR--QSLRPDYIKMFVLDEADEMLSRGFKDQIYD 205 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l---~~~~~~--~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~ 205 (413)
.+.... . .........+-...+.... .+.+.. +..+-.+..+.|+||.|.+.... ..+..
T Consensus 141 mv~~~~----------~---l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~ 205 (546)
T COG4626 141 MVKRDD----------D---LRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSE 205 (546)
T ss_pred HHHhCc----------c---hhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHH
Confidence 654322 0 0000011112212222211 122211 23333446789999999976552 33333
Q ss_pred HHhhC--CCCceEEEEEee
Q 015129 206 IFQLL--PAKVQVGVFSAT 222 (413)
Q Consensus 206 ~~~~~--~~~~~~i~~SaT 222 (413)
+..-+ .++.++++.|..
T Consensus 206 ~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 206 AKGGLGARPEGLVVYITTS 224 (546)
T ss_pred HHhhhccCcCceEEEEecC
Confidence 33322 235667776664
No 348
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.99 E-value=0.043 Score=54.30 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=17.8
Q ss_pred CcEEEeCCCCCcchHHhHHHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQ 100 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~ 100 (413)
+..|+.||.|+|||..+...+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHH
Confidence 46799999999999887554433
No 349
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.98 E-value=0.026 Score=51.70 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=28.2
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeC
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 223 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 223 (413)
...+++||||+|.+.... ...+.+.++.-+.+..++++|..+
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECCh
Confidence 446899999999875443 455666666655566666666444
No 350
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.053 Score=54.27 Aligned_cols=131 Identities=16% Similarity=0.097 Sum_probs=63.4
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 156 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
++-+.++||+|+|||.+....+........ ..++.++.--..- .-..+.++.+....++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G-~kkV~lit~Dt~R-igA~eQL~~~a~~~gvpv----------------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREG-ADQLALLTTDSFR-IGALEQLRIYGRILGVPV----------------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcC-CCeEEEecCcccc-hHHHHHHHHHHHhCCCCc-----------------
Confidence 445789999999999876544433222211 1144444332211 001233444433333322
Q ss_pred cCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhcc-CcHHHHHHHHhhCCCCceEEEEEeeCCHhH-HHHHHHh
Q 015129 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIYDIFQLLPAKVQVGVFSATMPPEA-LEITRKF 234 (413)
Q Consensus 157 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~-~~~~~~~ 234 (413)
..+.+|+.+.+.+.. ..++++|+||=+=+.... .....+..+.....+...++.++||...+. .+....|
T Consensus 246 ----~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 246 ----HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred ----cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 122356655555543 234578888877643211 122333333333334455777888876443 3344444
No 351
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.98 E-value=0.05 Score=50.35 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=15.4
Q ss_pred CcEEEeCCCCCcchHHhHH
Q 015129 78 LDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~ 96 (413)
+..++.||+|+|||..+..
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~ 55 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARI 55 (355)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4579999999999977543
No 352
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.037 Score=54.70 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=16.7
Q ss_pred CcEEEeCCCCCcchHHhHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~ 98 (413)
+..|+.||.|+|||.++...+
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 446999999999998875544
No 353
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.93 E-value=0.013 Score=48.10 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=28.1
Q ss_pred hhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHH
Q 015129 72 VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 123 (413)
Q Consensus 72 ~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 123 (413)
..+.+++++++.||+|+|||..+...+...+..+. .++++ +..+|...
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~---~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAIANEAIRKGY---SVLFI-TASDLLDE 89 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEE-EHHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCc---ceeEe-ecCceecc
Confidence 33446889999999999999887655555444332 55554 44455444
No 354
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.88 E-value=0.027 Score=52.41 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=18.3
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHcc
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~ 102 (413)
+.+++|.||+|+|||.+. -.++..+
T Consensus 40 ~~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 367999999999999775 3344333
No 355
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.85 E-value=0.21 Score=39.87 Aligned_cols=133 Identities=18% Similarity=0.256 Sum_probs=70.5
Q ss_pred EEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHH-HHHHHHHHhhcccCcEEEEEEcCc-----chHHHHH
Q 015129 80 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ-QIEKVMRALGDYLGVKVHACVGGT-----SVREDQR 153 (413)
Q Consensus 80 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~-q~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 153 (413)
+.+-.++|.|||.+++..+++....+. +++++-=.+.-.. --...++++ .++.......+. +......
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~---~v~~vQFlKg~~~~gE~~~l~~l---~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGY---RVGVVQFLKGGWKYGELKALERL---PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEEeCCCCccCHHHHHHhC---CCcEEEECCCCCccCCCChHHHHH
Confidence 556677899999998888877776655 7776322221100 001123332 133332221111 1111100
Q ss_pred HHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCc--HHHHHHHHhhCCCCceEEEEEeeCCHhHHHH
Q 015129 154 ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF--KDQIYDIFQLLPAKVQVGVFSATMPPEALEI 230 (413)
Q Consensus 154 ~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 230 (413)
.. ....+.... ......++++|+||+-...+.++ ...+..+++..+...-+|+.+-.+++.+.+.
T Consensus 79 ~a-----------~~~~~~a~~-~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 79 AA-----------AEGWAFAKE-AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEA 145 (159)
T ss_pred HH-----------HHHHHHHHH-HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 00 111111111 12234579999999988766553 4677777887777777777777777665543
No 356
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.85 E-value=0.036 Score=45.47 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=74.7
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
....+.+..++|.|||.+++..+++++..+. +++++-=.+.-.. ..+...+....++.......+.....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~---~V~ivQFlKg~~~--~GE~~~l~~l~~v~~~~~g~~~~~~~----- 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGK---KVGVVQFIKGAWS--TGERNLLEFGGGVEFHVMGTGFTWET----- 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCCc--cCHHHHHhcCCCcEEEECCCCCcccC-----
Confidence 4578999999999999999888887777665 6666654332110 11111111111222222111101000
Q ss_pred HcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCc--HHHHHHHHhhCCCCceEEEEEeeCCHhHHHH
Q 015129 156 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF--KDQIYDIFQLLPAKVQVGVFSATMPPEALEI 230 (413)
Q Consensus 156 ~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 230 (413)
....--.......+..... .+.-..+++||+||+-...+.++ ...+..++...|...-+|+..-.+++++.+.
T Consensus 91 -~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ 165 (191)
T PRK05986 91 -QDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEA 165 (191)
T ss_pred -CCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 0000000011111111111 12234479999999998887764 3666777777777776666655566655443
No 357
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.84 E-value=0.083 Score=52.68 Aligned_cols=92 Identities=21% Similarity=0.178 Sum_probs=73.9
Q ss_pred ccchHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCC--CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 015129 263 EEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRD--HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 338 (413)
Q Consensus 263 ~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~ 338 (413)
.+.|.+.+..++... .++.+||.++....+..+.+.|+... ..+..+|++++..+|.+.+....+|+.+|+|.|..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 346777777777654 46689999999999999999998753 57899999999999999999999999999999985
Q ss_pred CCCCCCCCCCcEEEEcc
Q 015129 339 LARGIDVQQVSLVINYD 355 (413)
Q Consensus 339 ~~~G~d~~~~~~vi~~~ 355 (413)
+-. .-+++...+|..+
T Consensus 250 AvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 250 AVF-APVEDLGLVAIWD 265 (665)
T ss_pred eEE-eccCCCCEEEEEc
Confidence 332 3455677776544
No 358
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.84 E-value=0.039 Score=52.64 Aligned_cols=84 Identities=27% Similarity=0.209 Sum_probs=55.4
Q ss_pred CHHHHHHHHHCCCCCCcH-------HHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC---CCceeEEEEcCc
Q 015129 48 QENLLRGIYAYGFEKPSA-------IQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPT 117 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~-------~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~liv~P~ 117 (413)
.+-+...|++..-..++. -|.+++.. .+++-+++.|..|||||.+++--+...+... ..+..+||+.|+
T Consensus 191 dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN 269 (747)
T COG3973 191 DEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPN 269 (747)
T ss_pred HHHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCc
Confidence 334455666654444443 24444422 2366789999999999999887666655432 233469999999
Q ss_pred HHHHHHHHHHHHHhh
Q 015129 118 RELAQQIEKVMRALG 132 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~ 132 (413)
+....-+.+.+-+++
T Consensus 270 ~vFleYis~VLPeLG 284 (747)
T COG3973 270 RVFLEYISRVLPELG 284 (747)
T ss_pred HHHHHHHHHhchhhc
Confidence 998887777665553
No 359
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.82 E-value=0.058 Score=46.89 Aligned_cols=41 Identities=20% Similarity=0.037 Sum_probs=29.3
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015129 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
+..|.-++|.|++|+|||..++-.+....... +.+++|++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~ 50 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSL 50 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeC
Confidence 34577789999999999987665555554441 237888875
No 360
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.031 Score=53.34 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=44.6
Q ss_pred CcceEEEeccchHHhcc-------CcHHHHHHHHhhC---CCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccc
Q 015129 181 DYIKMFVLDEADEMLSR-------GFKDQIYDIFQLL---PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTL 250 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~-------~~~~~~~~~~~~~---~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (413)
+...+|+|||++.+... .....+..++..+ .....+..+.||-.+++-+-. + .+|
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpA---i------------LRP 667 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPA---I------------LRP 667 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchh---h------------cCC
Confidence 34689999999987621 1223444444333 235567888899766543211 0 111
Q ss_pred cCe-EEEEEEeccccchHHHHHHHHHh
Q 015129 251 EGI-KQFYVNVEKEEWKLETLCDLYET 276 (413)
Q Consensus 251 ~~~-~~~~~~~~~~~~~~~~l~~~~~~ 276 (413)
..+ +..|...+....+.+.|..+.+.
T Consensus 668 GRlDk~LyV~lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 668 GRLDKLLYVGLPNAEERVAILKTITKN 694 (802)
T ss_pred CccCceeeecCCCHHHHHHHHHHHhcc
Confidence 111 23455566666677777666553
No 361
>PRK04195 replication factor C large subunit; Provisional
Probab=95.81 E-value=0.073 Score=51.41 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.2
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015129 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997753
No 362
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.80 E-value=0.034 Score=52.58 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=15.5
Q ss_pred CcEEEeCCCCCcchHHhH
Q 015129 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~ 95 (413)
.++++.||+|+|||..+-
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 478999999999997764
No 363
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.79 E-value=0.07 Score=49.31 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=32.8
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
|.-+++.+++|+|||..++..+...... +.+++|+.-. +...|+..+..++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECC-cCHHHHHHHHHHc
Confidence 5678999999999998766554443322 2388888654 3345555555443
No 364
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.78 E-value=0.035 Score=51.72 Aligned_cols=41 Identities=12% Similarity=0.283 Sum_probs=25.0
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEee
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 222 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 222 (413)
...+++|+||+|.+.... ...+.+.++.-+.+..+|+.|.+
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEECC
Confidence 456899999999985443 34455555554445544444444
No 365
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.77 E-value=0.12 Score=44.55 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=31.9
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~ 130 (413)
.|..+++.+++|+|||..+...+.+.+..+ .+++++.. .....++.+..+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g---~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDG---DPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcC---CeEEEEEc-cCCHHHHHHHHHH
Confidence 467899999999999987665454444332 26777764 2334444444433
No 366
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.76 E-value=0.037 Score=46.29 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=27.9
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEee
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 222 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 222 (413)
.+.+.||+|||+.+.+-. ...+.+......+.+++.+..-+
T Consensus 112 grhKIiILDEADSMT~gA-QQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAGA-QQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhhHH-HHHHHHHHHHHcccchhhhhhcc
Confidence 456899999999875443 66677777766666665554443
No 367
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.69 E-value=0.17 Score=43.66 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=34.9
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
.|.-+++.|++|+|||..+...+...+.++ .+++|+.-... ..++.+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g---~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQG---KKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCC---CEEEEEEcCCC-HHHHHHHHHHC
Confidence 356789999999999987766555544433 37787776433 45555656554
No 368
>PRK10867 signal recognition particle protein; Provisional
Probab=95.69 E-value=0.22 Score=46.94 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=17.7
Q ss_pred cEEEeCCCCCcchHHhHHHHHHc
Q 015129 79 DVIQQAQSGTGKTATFCSGILQQ 101 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~~~ 101 (413)
-+++++++|+|||.++.-.+...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999998775555443
No 369
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.67 E-value=0.017 Score=54.21 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=29.7
Q ss_pred cHHHHhhhhhhhcC--CcEEEeCCCCCcchHHhHHHHHHccccCC
Q 015129 64 SAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGL 106 (413)
Q Consensus 64 ~~~Q~~~~~~i~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~ 106 (413)
.+.|...+..+.+. .-+++.||||||||.+ +..++..+....
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~~ 286 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTPE 286 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCCC
Confidence 66777777776653 3468999999999987 455665554443
No 370
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.044 Score=49.44 Aligned_cols=64 Identities=22% Similarity=0.345 Sum_probs=37.7
Q ss_pred CcCCchhhccCcccCCCCHHHHHHHHHC------C--------CCCCcHHHHhh------hhhhhcC-----CcEEEeCC
Q 015129 31 FFTSYDEVYDSFDAMGLQENLLRGIYAY------G--------FEKPSAIQQRG------IVPFCKG-----LDVIQQAQ 85 (413)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~------~--------~~~~~~~Q~~~------~~~i~~~-----~~~li~~~ 85 (413)
...+.+.....|+.++....+...|+.- + ...-...=.+| +|.+.+| +.++++||
T Consensus 174 ~~~~~~~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GP 253 (491)
T KOG0738|consen 174 PHASLKGEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGP 253 (491)
T ss_pred cccccccccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCC
Confidence 3334555677888888888887777541 1 11111111111 2222333 67999999
Q ss_pred CCCcchHHh
Q 015129 86 SGTGKTATF 94 (413)
Q Consensus 86 tGsGKT~~~ 94 (413)
+|+|||+.+
T Consensus 254 PGTGKTlLA 262 (491)
T KOG0738|consen 254 PGTGKTLLA 262 (491)
T ss_pred CCCcHHHHH
Confidence 999999765
No 371
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.66 E-value=0.091 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=18.0
Q ss_pred CCcEEEeCCCCCcchHHhHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~ 99 (413)
|+-+.++||||+|||.+....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 45688999999999988655443
No 372
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.62 E-value=0.36 Score=42.67 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=22.4
Q ss_pred CcHHHHhhhhhhh----cC-CcEEEeCCCCCcchHHhH
Q 015129 63 PSAIQQRGIVPFC----KG-LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 63 ~~~~Q~~~~~~i~----~~-~~~li~~~tGsGKT~~~~ 95 (413)
+++.+.+++..+. .+ ..+++.||+|+|||..+-
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3445555665543 23 358899999999997754
No 373
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.60 E-value=0.16 Score=44.90 Aligned_cols=132 Identities=23% Similarity=0.291 Sum_probs=63.7
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc-Cc-HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA-PT-RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 154 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~-P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
.+-+++++|+|+|||.+..-.+...... +.+++++. .+ +.-+. +.+..|....+..+.....+.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~---g~~V~li~~D~~r~~a~---~ql~~~~~~~~i~~~~~~~~~d------- 138 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQ---GKSVLLAAGDTFRAAAI---EQLEEWAKRLGVDVIKQKEGAD------- 138 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeCCCCCHHHH---HHHHHHHHhCCeEEEeCCCCCC-------
Confidence 4567888999999998765554433222 22666555 32 22222 2233333333433221111111
Q ss_pred HHcCCcEEEEccHH-HHHHHHcCCCCCCcceEEEeccchHHhc-cCcHHHHHHHHhhCC------CCceEEEEEeeCCHh
Q 015129 155 LQAGVHVVVGTPGR-VFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQLLP------AKVQVGVFSATMPPE 226 (413)
Q Consensus 155 ~~~~~~iii~T~~~-l~~~~~~~~~~~~~~~~iV~DE~h~~~~-~~~~~~~~~~~~~~~------~~~~~i~~SaT~~~~ 226 (413)
|.. ..+.+.. ....++++|++|=+-+... ......+..+....+ +...++.++|+...+
T Consensus 139 -----------p~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~ 205 (272)
T TIGR00064 139 -----------PAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN 205 (272)
T ss_pred -----------HHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH
Confidence 111 1111111 0123468899997765432 122234455544443 455678889987665
Q ss_pred HHHHHHHh
Q 015129 227 ALEITRKF 234 (413)
Q Consensus 227 ~~~~~~~~ 234 (413)
.......+
T Consensus 206 ~~~~~~~f 213 (272)
T TIGR00064 206 ALEQAKVF 213 (272)
T ss_pred HHHHHHHH
Confidence 44444444
No 374
>PRK05973 replicative DNA helicase; Provisional
Probab=95.59 E-value=0.03 Score=47.98 Aligned_cols=82 Identities=22% Similarity=0.218 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHCCCCC----------CcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEE
Q 015129 45 MGLQENLLRGIYAYGFEK----------PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL 114 (413)
Q Consensus 45 ~~l~~~~~~~l~~~~~~~----------~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv 114 (413)
.+++..+.+.-.+.||.. ++|. .+..--+..|.-++|.|++|+|||..++-.+.+....+. +++|+
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~-~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge---~vlyf 98 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTPA-EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGR---TGVFF 98 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCCH-HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC---eEEEE
Confidence 345555555555556532 3332 223334556778999999999999887766665554433 77777
Q ss_pred cCcHHHHHHHHHHHHHh
Q 015129 115 APTRELAQQIEKVMRAL 131 (413)
Q Consensus 115 ~P~~~l~~q~~~~~~~~ 131 (413)
+-- +-..|..+++..+
T Consensus 99 SlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 99 TLE-YTEQDVRDRLRAL 114 (237)
T ss_pred EEe-CCHHHHHHHHHHc
Confidence 643 3356666666665
No 375
>PF05729 NACHT: NACHT domain
Probab=95.59 E-value=0.085 Score=42.55 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=15.4
Q ss_pred cEEEeCCCCCcchHHhHHHH
Q 015129 79 DVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~ 98 (413)
-++|.|++|+|||..+...+
T Consensus 2 ~l~I~G~~G~GKStll~~~~ 21 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLA 21 (166)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 36899999999997754333
No 376
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.58 E-value=0.048 Score=54.33 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=77.9
Q ss_pred EEEEEeccccchHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhC-CCeeEEecCCCCHHHHHHHHHHHhcCCCc
Q 015129 255 QFYVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSGSSR 331 (413)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 331 (413)
.+...--+.+.|.+.+.+++... .++.+||.+|.......+.+.|+.+ |.++..+|+++++.+|...+.+..+|+.+
T Consensus 219 ~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~ 298 (730)
T COG1198 219 PFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEAR 298 (730)
T ss_pred ceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCce
Confidence 34444556677888888887754 5678999999999888888888765 78999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCcEEEEc
Q 015129 332 VLITTDLLARGIDVQQVSLVINY 354 (413)
Q Consensus 332 vli~t~~~~~G~d~~~~~~vi~~ 354 (413)
|+|.|..+-. .-++++..+|..
T Consensus 299 vVIGtRSAlF-~Pf~~LGLIIvD 320 (730)
T COG1198 299 VVIGTRSALF-LPFKNLGLIIVD 320 (730)
T ss_pred EEEEechhhc-CchhhccEEEEe
Confidence 9999975322 234566666643
No 377
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.55 E-value=0.053 Score=49.15 Aligned_cols=145 Identities=11% Similarity=0.048 Sum_probs=69.9
Q ss_pred CcHHHHhhhhhhhc-----CCcEEEeCCCCCcchHHhHHHHHHccccCCCc--eeEEEEcCcHHHHHHHHHHHHHhhccc
Q 015129 63 PSAIQQRGIVPFCK-----GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ--CQALVLAPTRELAQQIEKVMRALGDYL 135 (413)
Q Consensus 63 ~~~~Q~~~~~~i~~-----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~--~~~liv~P~~~l~~q~~~~~~~~~~~~ 135 (413)
++|+|...|..+.. .+..++.||.|.|||..+...+.. +.+..+. ... |- ....++.+....
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~-llC~~~~~~~~~---Cg-------~C~~C~~~~~~~ 70 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQA-LLCETPAPGHKP---CG-------ECMSCHLFGQGS 70 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHH-HcCCCCCCCCCC---CC-------cCHHHHHHhcCC
Confidence 36888888888774 245889999999999876544433 3322211 011 11 112233333332
Q ss_pred CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCce
Q 015129 136 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 215 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
...+..+.......... .....|-|-....+.+.+..... ....+++|+|++|.+... ....+.+.++..+....
T Consensus 71 HpD~~~~~p~~~~~~~g---~~~~~I~id~iR~l~~~~~~~p~-~~~~kV~iiEp~~~Ld~~-a~naLLk~LEep~~~~~ 145 (325)
T PRK08699 71 HPDFYEITPLSDEPENG---RKLLQIKIDAVREIIDNVYLTSV-RGGLRVILIHPAESMNLQ-AANSLLKVLEEPPPQVV 145 (325)
T ss_pred CCCEEEEeccccccccc---ccCCCcCHHHHHHHHHHHhhCcc-cCCceEEEEechhhCCHH-HHHHHHHHHHhCcCCCE
Confidence 33333333211100000 00011222222222222222222 245789999999987544 35566666666655555
Q ss_pred EEEEEeeC
Q 015129 216 VGVFSATM 223 (413)
Q Consensus 216 ~i~~SaT~ 223 (413)
+|++|..+
T Consensus 146 ~Ilvth~~ 153 (325)
T PRK08699 146 FLLVSHAA 153 (325)
T ss_pred EEEEeCCh
Confidence 55544443
No 378
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.54 E-value=0.071 Score=48.12 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=34.8
Q ss_pred EEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeC
Q 015129 161 VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 223 (413)
Q Consensus 161 iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 223 (413)
|-|-....+.+.+...... ...+++|+|++|.+.... ...+.+.++.-+ +..++++|..+
T Consensus 104 I~id~ir~i~~~l~~~p~~-~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLE-APRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred CcHHHHHHHHHHHccCccc-CCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECCh
Confidence 3333444444444443332 457999999999875443 455556666655 66566555444
No 379
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.52 E-value=0.059 Score=54.27 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.5
Q ss_pred CcEEEeCCCCCcchHHhH
Q 015129 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~ 95 (413)
.++++.||+|+|||..+-
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 478999999999997763
No 380
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.51 E-value=0.038 Score=52.98 Aligned_cols=18 Identities=28% Similarity=0.267 Sum_probs=15.9
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015129 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 578999999999999864
No 381
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=95.51 E-value=0.0094 Score=48.67 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=25.1
Q ss_pred EEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015129 80 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 80 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
.++.||++||||.-.+-.+-.....+ .+++++-|...
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~~~~~---~~v~~~kp~~D 40 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRYEIAG---KKVLVFKPAID 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEEESTS
T ss_pred EEEECCcCChhHHHHHHHHHHHHhCC---CeEEEEEeccc
Confidence 57899999999987554443332223 38888888644
No 382
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.51 E-value=0.12 Score=51.66 Aligned_cols=100 Identities=15% Similarity=0.189 Sum_probs=75.1
Q ss_pred EEEeccccchHHHH-HHHHHh-hcccceEEEEccHHHHHHHHHHhhh----CCCeeEEecCCCCHHHHHHHHHHHhcCCC
Q 015129 257 YVNVEKEEWKLETL-CDLYET-LAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSS 330 (413)
Q Consensus 257 ~~~~~~~~~~~~~l-~~~~~~-~~~~~~lif~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 330 (413)
....+....|.... ..++.. ..+.++++.+|++.-+...++.+++ .|..+..++|+++..++..+++...+|+.
T Consensus 260 Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~ 339 (630)
T TIGR00643 260 LLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQI 339 (630)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCC
Confidence 44445555555432 222322 2456899999999988877766654 47899999999999999999999999999
Q ss_pred cEEEEcC-CCCCCCCCCCCcEEEEccC
Q 015129 331 RVLITTD-LLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 331 ~vli~t~-~~~~G~d~~~~~~vi~~~~ 356 (413)
+|+|+|. .+...+++.++.+||....
T Consensus 340 ~IiVgT~~ll~~~~~~~~l~lvVIDEa 366 (630)
T TIGR00643 340 HLVVGTHALIQEKVEFKRLALVIIDEQ 366 (630)
T ss_pred CEEEecHHHHhccccccccceEEEech
Confidence 9999998 4556677888888886544
No 383
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.46 E-value=0.26 Score=39.92 Aligned_cols=138 Identities=16% Similarity=0.247 Sum_probs=63.1
Q ss_pred EEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCC
Q 015129 80 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGV 159 (413)
Q Consensus 80 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (413)
+.+-...|=|||.+++-.+++++-.+. +++++-=.+.- ....+...+....++.......+......... .
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G~---rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~----~ 76 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHGM---RVLIVQFLKGG--RYSGELKALKKLPNVEIERFGKGFVWRMNEEE----E 76 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT-----EEEEESS--S--S--HHHHHHGGGT--EEEE--TT----GGGHH----H
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCCC---EEEEEEEecCC--CCcCHHHHHHhCCeEEEEEcCCcccccCCCcH----H
Confidence 455566799999999888887776665 88887665551 11222333222222333222111110000000 0
Q ss_pred cEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcH--HHHHHHHhhCCCCceEEEEEeeCCHhHHH
Q 015129 160 HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK--DQIYDIFQLLPAKVQVGVFSATMPPEALE 229 (413)
Q Consensus 160 ~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 229 (413)
+ .......++.... ......+++||+||+-...+.++. ..+..++...+...-+|+..-.+++++.+
T Consensus 77 ~--~~~~~~~~~~a~~-~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e 145 (172)
T PF02572_consen 77 D--RAAAREGLEEAKE-AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIE 145 (172)
T ss_dssp H--HHHHHHHHHHHHH-HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHH
T ss_pred H--HHHHHHHHHHHHH-HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHH
Confidence 1 0111111222221 122345899999999988776643 56777777777777666665556555443
No 384
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.46 E-value=0.16 Score=46.82 Aligned_cols=110 Identities=16% Similarity=0.117 Sum_probs=58.0
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 156 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
.+.+.+.|+.|.|||+.+-+. .+.+.. ..+.+ +..-....++.+.+.++. ++
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f-~~~lp~-~~k~R----~HFh~Fm~~vh~~l~~~~-----------~~----------- 113 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLF-YDSLPI-KRKRR----VHFHEFMLDVHSRLHQLR-----------GQ----------- 113 (362)
T ss_pred CceEEEECCCCCchhHHHHHH-HHhCCc-ccccc----ccccHHHHHHHHHHHHHh-----------CC-----------
Confidence 678999999999999864322 222222 11112 233355555555555542 11
Q ss_pred cCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhC-CCCceEEEEEeeCCHhH
Q 015129 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVFSATMPPEA 227 (413)
Q Consensus 157 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~ 227 (413)
.+-+ ..+.+.+ .....++.+||+|- .+.+-...+.+++..+ ....-+|..|-++|.++
T Consensus 114 --~~~l----~~va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 114 --DDPL----PQVADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred --CccH----HHHHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 0100 0111111 12246899999994 4444445555555433 34666777777776543
No 385
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.45 E-value=0.094 Score=42.42 Aligned_cols=132 Identities=19% Similarity=0.245 Sum_probs=69.8
Q ss_pred cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHH-HHHHHHHHhhcccCcEEEEEEcCcc-----hHHHH
Q 015129 79 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ-QIEKVMRALGDYLGVKVHACVGGTS-----VREDQ 152 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~-q~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 152 (413)
-+.+..++|.|||.+++-.++++...+. +++++-=.+.-.. -=...+.++ ++.+.....+.. .....
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~---~v~ivQFlKg~~~~GE~~~l~~~----~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGK---KVGVIQFIKGAWPNGERAAFEPH----GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCcccChHHHHHhc----CcEEEECCCCCeecCCCcHHHH
Confidence 4677888999999998888777776665 6666522221100 000112221 222222211111 00000
Q ss_pred HHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCc--HHHHHHHHhhCCCCceEEEEEeeCCHhHHH
Q 015129 153 RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF--KDQIYDIFQLLPAKVQVGVFSATMPPEALE 229 (413)
Q Consensus 153 ~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 229 (413)
. ..........+ ......+++||+||+-...+.++ ...+..++...|+..-+|+..-.+++.+.+
T Consensus 80 ~-----------~~~~~~~~a~~-~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e 146 (173)
T TIGR00708 80 A-----------IAKAAWQHAKE-MLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLE 146 (173)
T ss_pred H-----------HHHHHHHHHHH-HHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHH
Confidence 0 01111112111 11234579999999998777663 356667777777777777666666665544
No 386
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.45 E-value=0.084 Score=53.54 Aligned_cols=90 Identities=19% Similarity=0.283 Sum_probs=66.4
Q ss_pred hHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCC-----CeeEE-ecCCCCHHHHHHHHHHHhcCCCcEEEEcCC-
Q 015129 266 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD-----HTVSA-THGDMDQNTRDIIMREFRSGSSRVLITTDL- 338 (413)
Q Consensus 266 ~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~~~~~vli~t~~- 338 (413)
..-.+..+.-...++++++.+|+..-+...++.|+... ..+.. +|+.++.+++++++++|.+|+.+|||+|+.
T Consensus 112 Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 112 TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 34455566666677899999999999988888887642 33333 999999999999999999999999999974
Q ss_pred CCCCCC-CC--CCcEEEEcc
Q 015129 339 LARGID-VQ--QVSLVINYD 355 (413)
Q Consensus 339 ~~~G~d-~~--~~~~vi~~~ 355 (413)
+..-.+ +. ..+.|+..|
T Consensus 192 L~k~~e~L~~~kFdfifVDD 211 (1187)
T COG1110 192 LSKRFEELSKLKFDFIFVDD 211 (1187)
T ss_pred HHhhHHHhcccCCCEEEEcc
Confidence 333332 12 355555443
No 387
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.38 E-value=0.18 Score=50.07 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=25.2
Q ss_pred CCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 180 PDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 180 ~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
....+++|+||+|.+.... ...+.+.+...+....+|+.|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 3457899999999985433 445555555555555444443
No 388
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.25 Score=44.52 Aligned_cols=60 Identities=18% Similarity=0.072 Sum_probs=37.3
Q ss_pred chhhccCcccCCCCHHHHHHHHHCCC-CCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHh
Q 015129 35 YDEVYDSFDAMGLQENLLRGIYAYGF-EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~~~-~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~ 94 (413)
..+...+|++.|=-+.+...+++.-+ +--+|-.-.-...+...+++++-+|+|+|||..+
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 44556788888766667777765422 1112222222223334688999999999999876
No 389
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.34 E-value=0.18 Score=46.48 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=21.7
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHcccc
Q 015129 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDY 104 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~ 104 (413)
+..|+.++|+||+|+|||..+ ..+...+..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~-~~i~~~I~~ 194 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLL-QKIAQAITR 194 (415)
T ss_pred eCCCCEEEEECCCCCChhHHH-HHHHHhhcc
Confidence 446899999999999999764 334444433
No 390
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.34 E-value=0.48 Score=38.65 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=15.7
Q ss_pred EEEeCCCCCcchHHhHHHHH
Q 015129 80 VIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 80 ~li~~~tGsGKT~~~~~~~~ 99 (413)
+++.|++|+|||......+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999988654443
No 391
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.32 E-value=0.028 Score=51.22 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=30.5
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHH
Q 015129 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 120 (413)
+..+++++++||||||||.. +.+++..+... .+++.+=++.++
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~~---~rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAIPPQ---ERLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHcccCCC---CCEEEECCCccc
Confidence 44588999999999999976 45555555432 267777777665
No 392
>PRK06620 hypothetical protein; Validated
Probab=95.30 E-value=0.034 Score=47.20 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=15.1
Q ss_pred CcEEEeCCCCCcchHHhH
Q 015129 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~ 95 (413)
..+++.||+|+|||..+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999997653
No 393
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.29 E-value=0.081 Score=46.62 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=15.2
Q ss_pred CcEEEeCCCCCcchHHh
Q 015129 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~ 94 (413)
.+++++|++|.|||.+.
T Consensus 62 p~lLivG~snnGKT~Ii 78 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII 78 (302)
T ss_pred CceEEecCCCCcHHHHH
Confidence 57999999999999765
No 394
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.29 E-value=0.038 Score=50.87 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=27.2
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
.+..++++||||||||.. +.+++..+....+..+++.+=...+
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~~~~~~~~IvtiEdp~E 190 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCGETYPDRKIVTYEDPIE 190 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHHhcCCCceEEEEecCch
Confidence 455789999999999976 4556555544333335555544333
No 395
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.27 E-value=0.038 Score=49.16 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=18.5
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHc
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQ 101 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~ 101 (413)
++.++++||||+|||.+....+...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999998765444433
No 396
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.26 E-value=0.03 Score=48.52 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=37.1
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
.|..+++.||+|+|||..++-.+...+..+. +++|++- .+-..+..+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge---~~lyvs~-ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE---PGIYVAL-EEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC---cEEEEEe-eCCHHHHHHHHHHh
Confidence 4678899999999999877666665554433 7888874 44566666666654
No 397
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.26 E-value=0.089 Score=47.98 Aligned_cols=41 Identities=10% Similarity=0.284 Sum_probs=26.9
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEee
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 222 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 222 (413)
...+++|+||+|.+.... ...+.+.++.-++...+|++|..
T Consensus 109 ~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~~ 149 (329)
T PRK08058 109 SNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTEN 149 (329)
T ss_pred cCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeCC
Confidence 456899999999885443 44555566665556666664443
No 398
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.25 E-value=0.2 Score=48.25 Aligned_cols=19 Identities=32% Similarity=0.179 Sum_probs=15.2
Q ss_pred EEEeCCCCCcchHHhHHHH
Q 015129 80 VIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 80 ~li~~~tGsGKT~~~~~~~ 98 (413)
.++.||.|+|||.++.+.+
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999998765443
No 399
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.24 E-value=0.11 Score=49.61 Aligned_cols=23 Identities=22% Similarity=0.026 Sum_probs=17.7
Q ss_pred CcEEEeCCCCCcchHHhHHHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQ 100 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~ 100 (413)
+..++.||+|+|||.++...+-.
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 45789999999999887554443
No 400
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.12 E-value=0.068 Score=49.02 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=20.9
Q ss_pred hcCCcEEEeCCCCCcchHHhHHHHHHcccc
Q 015129 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDY 104 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~ 104 (413)
-+|+..+|.||.|+|||..+ ..+...+..
T Consensus 167 GkGQR~lIvgppGvGKTTLa-K~Ian~I~~ 195 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLL-QNIANSITT 195 (416)
T ss_pred ccCceEEEeCCCCCChhHHH-HHHHHHHHh
Confidence 35899999999999999653 334444443
No 401
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.061 Score=48.92 Aligned_cols=137 Identities=20% Similarity=0.232 Sum_probs=73.4
Q ss_pred hhccCcccCCCCHHHHHHHHHCCCCCC--cHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEE
Q 015129 37 EVYDSFDAMGLQENLLRGIYAYGFEKP--SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL 114 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~--~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv 114 (413)
....++++.-|++.+.+.+...-..+- ..+| .--+|+++-+|+|+|||+.+
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~-------apfRNilfyGPPGTGKTm~A-------------------- 401 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATANTKKHQ-------APFRNILFYGPPGTGKTMFA-------------------- 401 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhccccccc-------chhhheeeeCCCCCCchHHH--------------------
Confidence 334556666777777665543221110 0000 01268999999999999775
Q ss_pred cCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHH
Q 015129 115 APTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 194 (413)
Q Consensus 115 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~ 194 (413)
++|+ ...|+...+.+||.-.+..... |+-...++++-....- ==+++|||++-+
T Consensus 402 ---relA-----------r~SGlDYA~mTGGDVAPlG~qa--------VTkiH~lFDWakkS~r----GLllFIDEADAF 455 (630)
T KOG0742|consen 402 ---RELA-----------RHSGLDYAIMTGGDVAPLGAQA--------VTKIHKLFDWAKKSRR----GLLLFIDEADAF 455 (630)
T ss_pred ---HHHH-----------hhcCCceehhcCCCccccchHH--------HHHHHHHHHHHhhccc----ceEEEehhhHHH
Confidence 2222 2236777777777554433221 3333445554433111 126889999987
Q ss_pred hccC--------cHHHHHHHHhhCC-CCceEEEEEeeCCHh
Q 015129 195 LSRG--------FKDQIYDIFQLLP-AKVQVGVFSATMPPE 226 (413)
Q Consensus 195 ~~~~--------~~~~~~~~~~~~~-~~~~~i~~SaT~~~~ 226 (413)
+..- -...+..++-+.. ....++++=||-.+.
T Consensus 456 LceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg 496 (630)
T KOG0742|consen 456 LCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 496 (630)
T ss_pred HHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc
Confidence 7321 1234444443333 245577777886553
No 402
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.07 E-value=0.49 Score=44.60 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=17.6
Q ss_pred cEEEeCCCCCcchHHhHHHHHH
Q 015129 79 DVIQQAQSGTGKTATFCSGILQ 100 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~~ 100 (413)
-+++++++|+|||.++.-.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999887555544
No 403
>PRK08506 replicative DNA helicase; Provisional
Probab=95.05 E-value=0.34 Score=46.56 Aligned_cols=116 Identities=21% Similarity=0.149 Sum_probs=60.6
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEE-EEcCcchHHHH
Q 015129 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA-CVGGTSVREDQ 152 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 152 (413)
+..|.-+++.|.||.|||..++-.+...... +.+++|++.- .-..|+..++-.... ++.... ..|..+...+.
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~~~---g~~V~~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~~ 262 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKALNQ---DKGVAFFSLE-MPAEQLMLRMLSAKT--SIPLQNLRTGDLDDDEWE 262 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHHhc---CCcEEEEeCc-CCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHH
Confidence 4446678999999999998877666655432 2367776553 345555555543222 221111 12333322222
Q ss_pred HHH-----HcCCcEEEE-----ccHHHHHHHHcCCCCCCcceEEEeccchHHh
Q 015129 153 RIL-----QAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 195 (413)
Q Consensus 153 ~~~-----~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~ 195 (413)
... .....+.|- |++.+...++........+++||||=.+.+.
T Consensus 263 ~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 263 RLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 111 123345553 3444443333211112247899999999775
No 404
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.03 E-value=0.51 Score=42.11 Aligned_cols=56 Identities=16% Similarity=0.339 Sum_probs=33.9
Q ss_pred HHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCC---CCceEEEEEeeC
Q 015129 168 RVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP---AKVQVGVFSATM 223 (413)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~---~~~~~i~~SaT~ 223 (413)
.++..+.++....+.--++|+||+|.+........+-.++.... ..+-++++|.-.
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 34445555444444445678899998887777777777766554 233455555444
No 405
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.02 E-value=0.027 Score=48.61 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.8
Q ss_pred EEEeCCCCCcchHHh
Q 015129 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~li~~~tGsGKT~~~ 94 (413)
++|.|++|+|||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 378999999999764
No 406
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.98 E-value=0.03 Score=57.73 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=72.8
Q ss_pred ccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCc-EEEEcCCCCCCCCCCCCcEEEEccCC
Q 015129 279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR-VLITTDLLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 279 ~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~-vli~t~~~~~G~d~~~~~~vi~~~~~ 357 (413)
..++|+|..-....+.+...+..+++....-.++ ++-..-+..|++ ++ .++-++..+-|+|+-++.||+..++-
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 3589999988888888888887777665544432 222344444554 54 45667889999999999999999999
Q ss_pred CChhhHHHhhhhccCCCCcc
Q 015129 358 TQPENYLHRIGRSGRFGRKG 377 (413)
Q Consensus 358 ~s~~~~~Q~~GR~~R~g~~~ 377 (413)
.++..-.|++||++|.|+.-
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred cCchHHHhhhhhhhhccccc
Confidence 99999999999999999864
No 407
>PRK06904 replicative DNA helicase; Validated
Probab=94.98 E-value=0.29 Score=46.98 Aligned_cols=118 Identities=18% Similarity=0.088 Sum_probs=59.9
Q ss_pred hhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEE-Ec-CcchHH
Q 015129 73 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VG-GTSVRE 150 (413)
Q Consensus 73 ~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ 150 (413)
-+..|.-+++.|.||.|||..++-.+...... .+..++|++.- --..|+..++-.... ++....+ .| ..+..+
T Consensus 217 Gl~~G~LiiIaarPg~GKTafalnia~~~a~~--~g~~Vl~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~g~~l~~~e 291 (472)
T PRK06904 217 GLQPSDLIIVAARPSMGKTTFAMNLCENAAMA--SEKPVLVFSLE-MPAEQIMMRMLASLS--RVDQTKIRTGQNLDQQD 291 (472)
T ss_pred ccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEecc-CCHHHHHHHHHHhhC--CCCHHHhccCCCCCHHH
Confidence 34456678999999999998765444433222 12267776553 345555555443322 2211111 23 223333
Q ss_pred HHHH------HHcCCcEEEE-----ccHHHHHHHHcCCCCCCcceEEEeccchHHh
Q 015129 151 DQRI------LQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 195 (413)
Q Consensus 151 ~~~~------~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~ 195 (413)
+.+. +....++.|- |++.+....+........+++||||=.|.+.
T Consensus 292 ~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 292 WAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 2221 2123456663 4455543332211111247899999998775
No 408
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.95 E-value=0.048 Score=50.10 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=20.6
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccc
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 103 (413)
.+..++++||||||||... .+++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4678999999999999764 55555554
No 409
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.94 E-value=0.15 Score=50.96 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=23.1
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
...+++|+||+|.+.... ...+.+.+..-+....+|+.|
T Consensus 117 g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred CCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEEEc
Confidence 457899999999875433 333444444444444444444
No 410
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.92 E-value=0.23 Score=51.62 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=75.5
Q ss_pred EEEEeccccchHHHHHH-HHHh-hcccceEEEEccHHHHHHHHHHhhh----CCCeeEEecCCCCHHHHHHHHHHHhcCC
Q 015129 256 FYVNVEKEEWKLETLCD-LYET-LAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGS 329 (413)
Q Consensus 256 ~~~~~~~~~~~~~~l~~-~~~~-~~~~~~lif~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 329 (413)
.....+....|...... .+.. ..+.+++|.+|+..-|...++.++. .+..+..++|..+..++.++++.+.+|+
T Consensus 475 ~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~ 554 (926)
T TIGR00580 475 RLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK 554 (926)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC
Confidence 34555555666544332 2222 2456899999999999888877765 3567888999999999999999999999
Q ss_pred CcEEEEcC-CCCCCCCCCCCcEEEEccC
Q 015129 330 SRVLITTD-LLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 330 ~~vli~t~-~~~~G~d~~~~~~vi~~~~ 356 (413)
++|+|+|. .+...+.+.++.++|....
T Consensus 555 ~dIVIGTp~ll~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 555 IDILIGTHKLLQKDVKFKDLGLLIIDEE 582 (926)
T ss_pred ceEEEchHHHhhCCCCcccCCEEEeecc
Confidence 99999997 5566678888888886543
No 411
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.91 E-value=0.29 Score=49.71 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=16.4
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015129 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
..++++.||+|+|||..+-
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999998753
No 412
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.84 E-value=0.062 Score=45.93 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=21.9
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 115 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~ 115 (413)
.-++++++|||||+.. +.+++.+-.....+ .++-+-
T Consensus 128 GLviiVGaTGSGKSTt-mAaMi~yRN~~s~g-HIiTIE 163 (375)
T COG5008 128 GLVIIVGATGSGKSTT-MAAMIGYRNKNSTG-HIITIE 163 (375)
T ss_pred ceEEEECCCCCCchhh-HHHHhcccccCCCC-ceEEec
Confidence 3478999999999976 44444443333333 444333
No 413
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.81 E-value=0.16 Score=48.28 Aligned_cols=122 Identities=15% Similarity=0.095 Sum_probs=59.5
Q ss_pred hhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEE-EcCcch
Q 015129 70 GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSV 148 (413)
Q Consensus 70 ~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~ 148 (413)
.+.-+..|.-+++.|+||+|||..++-.+...... .+.+++|+.. -.-..|+..++-.... ++....+ .|..+.
T Consensus 187 ~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~--~g~~v~~fSl-Em~~~~l~~Rl~~~~~--~v~~~~~~~~~l~~ 261 (421)
T TIGR03600 187 LTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR--EGKPVLFFSL-EMSAEQLGERLLASKS--GINTGNIRTGRFND 261 (421)
T ss_pred HhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEEC-CCCHHHHHHHHHHHHc--CCCHHHHhcCCCCH
Confidence 33344557778999999999998776555444322 1226777763 2234444444332211 2221111 222222
Q ss_pred HHHHHH-----HHcCCcEEEEc-----cHHHHHHHHcCCCCCCcceEEEeccchHHhc
Q 015129 149 REDQRI-----LQAGVHVVVGT-----PGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 196 (413)
Q Consensus 149 ~~~~~~-----~~~~~~iii~T-----~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~ 196 (413)
.++.+. ......+.|.. .+.+....+........+++||||=.|.+..
T Consensus 262 ~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 262 SDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 222111 11233555543 3344333332111122478999999987753
No 414
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.79 E-value=0.25 Score=45.99 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=15.7
Q ss_pred CcEEEeCCCCCcchHHhHH
Q 015129 78 LDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~ 96 (413)
+.+++.||+|+|||..+..
T Consensus 40 ~~~L~~G~~G~GKt~~a~~ 58 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARI 58 (367)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999977643
No 415
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=94.79 E-value=0.51 Score=43.84 Aligned_cols=145 Identities=14% Similarity=0.094 Sum_probs=63.3
Q ss_pred EEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHH-H---HHHHHHhhcc-cCcEEEEEEcCcchHHHHHHH
Q 015129 81 IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ-I---EKVMRALGDY-LGVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 81 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q-~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 155 (413)
++.++.|+|||......++..+........++++ ++..-+.. + ...+..+... ............-..
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 73 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKIIL------ 73 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEEE------
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEEe------
Confidence 4788999999998777676666555544355555 65554444 2 2233333332 111211111110000
Q ss_pred HcCCcEEEEccHHH--HHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeC--CHhHHHHH
Q 015129 156 QAGVHVVVGTPGRV--FDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM--PPEALEIT 231 (413)
Q Consensus 156 ~~~~~iii~T~~~l--~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~--~~~~~~~~ 231 (413)
.++..|.+.+.+.- ..-+. + ..++.+++||+-...+..+...+............ +..|.|+ ........
T Consensus 74 ~nG~~i~~~~~~~~~~~~~~~-G----~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~p~~~~~~~~~~~ 147 (384)
T PF03237_consen 74 PNGSRIQFRGADSPDSGDNIR-G----FEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSIR-MYISTPPNPGGWFYEIF 147 (384)
T ss_dssp TTS-EEEEES-----SHHHHH-T----S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--E-EEEEE---SSSHHHHHH
T ss_pred cCceEEEEecccccccccccc-c----cccceeeeeecccCchHHHHHHHHhhhhcccCcce-EEeecCCCCCCceeeee
Confidence 23455666653321 11111 1 33689999998876555445554444444332322 2444443 33444555
Q ss_pred HHhcCCC
Q 015129 232 RKFMNKP 238 (413)
Q Consensus 232 ~~~~~~~ 238 (413)
.......
T Consensus 148 ~~~~~~~ 154 (384)
T PF03237_consen 148 QRNLDDD 154 (384)
T ss_dssp HHHHCTS
T ss_pred ehhhcCC
Confidence 5555444
No 416
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.78 E-value=0.2 Score=52.83 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=33.2
Q ss_pred ceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCC
Q 015129 183 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 224 (413)
Q Consensus 183 ~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 224 (413)
--+||+|++|.+.+......+..++...+.+..+++.|-+.+
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 468999999998656556688888888888888888877643
No 417
>PHA00012 I assembly protein
Probab=94.63 E-value=0.84 Score=40.79 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=21.5
Q ss_pred EEEeCCCCCcchHHhHHHHHHccccCC
Q 015129 80 VIQQAQSGTGKTATFCSGILQQLDYGL 106 (413)
Q Consensus 80 ~li~~~tGsGKT~~~~~~~~~~~~~~~ 106 (413)
-++.|-+|+|||+.++.-+...+..+.
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~Gr 30 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKGC 30 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcCC
Confidence 478999999999998877777666553
No 418
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=94.61 E-value=0.081 Score=53.44 Aligned_cols=70 Identities=20% Similarity=0.194 Sum_probs=57.5
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC-CCceeEEEEcCcHHHHHHHHHHHHHhhc
Q 015129 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-LVQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~liv~P~~~l~~q~~~~~~~~~~ 133 (413)
.+++-|.+++... ...++|.|..|||||.+..--+.+.+... -....++.++=|+.-+.++.+++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5788999999875 67788899999999999888777777664 2333799999999999999999988765
No 419
>PHA00350 putative assembly protein
Probab=94.60 E-value=0.27 Score=45.55 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=18.4
Q ss_pred EEEeCCCCCcchHHhHH-HHHHccccC
Q 015129 80 VIQQAQSGTGKTATFCS-GILQQLDYG 105 (413)
Q Consensus 80 ~li~~~tGsGKT~~~~~-~~~~~~~~~ 105 (413)
.++.|.+|||||+.++. .++.++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC
Confidence 47899999999988765 344444444
No 420
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.58 E-value=0.048 Score=49.60 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=29.5
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHH
Q 015129 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 120 (413)
+..+++++++|+||||||.. +-+++..+.... +++.+=.+.++
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~~~---ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPAIE---RLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCCCC---eEEEecCCCcc
Confidence 33578999999999999976 455565554432 66666555454
No 421
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.58 E-value=0.08 Score=43.90 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=28.0
Q ss_pred CCcHHHHhhhhhhh-cCCcEEEeCCCCCcchHHhHHHHHHcc
Q 015129 62 KPSAIQQRGIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~-~~~~~li~~~tGsGKT~~~~~~~~~~~ 102 (413)
.+.+-|...+.... .+..+++.+|||||||..+ -+++..+
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i 49 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFI 49 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhc
Confidence 34566766666644 4889999999999999764 3344443
No 422
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.08 Score=54.34 Aligned_cols=59 Identities=19% Similarity=0.108 Sum_probs=39.3
Q ss_pred chhhccCcccCCCCHHHHHHHHHCCCC-CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHh
Q 015129 35 YDEVYDSFDAMGLQENLLRGIYAYGFE-KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~~~~-~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~ 94 (413)
-.+....|++.|.-..++..|+.+-+. -++|-+..-+ .+...+.+++.+|+|+|||+.+
T Consensus 257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHH
Confidence 445567888888777888878775332 1222222211 2345788999999999999875
No 423
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.48 E-value=0.26 Score=48.93 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=22.4
Q ss_pred ceEEEeccchHHhccCcHHHHHHHHhhCCCC
Q 015129 183 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAK 213 (413)
Q Consensus 183 ~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~ 213 (413)
-.++|+||+..-.|......+.+.+.....+
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l~~l~~~ 514 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALKKLLKG 514 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHHHHHhcC
Confidence 4689999999888777777777666544433
No 424
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.45 E-value=0.11 Score=45.73 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=35.2
Q ss_pred HHHCCCCCCcHHHHhhhhhhhc--CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015129 55 IYAYGFEKPSAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 55 l~~~~~~~~~~~Q~~~~~~i~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
+.+.|+ .+.|.+.+..+.. +..+++.++||||||... .+++..+.. ...+++.+-...+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~--~~~~iitiEdp~E 119 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNT--PEKNIITVEDPVE 119 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCC--CCCeEEEECCCce
Confidence 445554 4556666665544 346899999999999774 444444432 2225555544333
No 425
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=94.39 E-value=0.063 Score=57.34 Aligned_cols=56 Identities=30% Similarity=0.391 Sum_probs=47.2
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccC--CCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYG--LVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
.+++++|.|..|||||++....+++.+..+ ..-..+|+++-|++-+.++..++..-
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 477999999999999999988888888774 34458999999999998888887654
No 426
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.39 E-value=0.25 Score=50.46 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=16.3
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015129 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
..+.++.||+|+|||..+-
T Consensus 203 ~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4689999999999998753
No 427
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.30 E-value=0.2 Score=51.21 Aligned_cols=20 Identities=30% Similarity=0.218 Sum_probs=16.9
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015129 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..++.+++.||+|+|||..+
T Consensus 210 ~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCceEEEECCCCCChHHHH
Confidence 34678999999999999764
No 428
>PRK10436 hypothetical protein; Provisional
Probab=94.28 E-value=0.11 Score=49.57 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=27.2
Q ss_pred cHHHHhhhhhhhc--CCcEEEeCCCCCcchHHhHHHHHHccc
Q 015129 64 SAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 64 ~~~Q~~~~~~i~~--~~~~li~~~tGsGKT~~~~~~~~~~~~ 103 (413)
.+.|...+..+.. +.-++++||||||||.+. .+++..+.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 5556666666543 456899999999999874 45555543
No 429
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.28 E-value=0.07 Score=48.22 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=15.4
Q ss_pred CcEEEeCCCCCcchHHhH
Q 015129 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~ 95 (413)
.++++.||+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 568999999999997653
No 430
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.26 E-value=0.14 Score=44.40 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=21.5
Q ss_pred hhhcCCcEEEeCCCCCcchHHhHHHHHHccc
Q 015129 73 PFCKGLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 73 ~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~ 103 (413)
.+.+|+.+++.+|.|+|||..+ -.+...+.
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLl-r~I~n~l~ 41 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLL-QSIANAIT 41 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHH-HHHHhccc
Confidence 3457999999999999999653 33444433
No 431
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=94.26 E-value=0.39 Score=39.02 Aligned_cols=139 Identities=21% Similarity=0.304 Sum_probs=69.8
Q ss_pred EEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHH-HHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcC
Q 015129 80 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI-EKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 158 (413)
Q Consensus 80 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
+++.-..|-|||.+++-.+++++-.+. ++.|+-=-+.-...= ...+..+ ...+....+..+...+.... .
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~---rv~vvQFiKg~~~~GE~~~~~~~--~~~v~~~~~~~g~tw~~~~~----~ 101 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGL---RVGVVQFIKGGWKYGEEAALEKF--GLGVEFHGMGEGFTWETQDR----E 101 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCC---EEEEEEEeecCcchhHHHHHHhh--ccceeEEecCCceeCCCcCc----H
Confidence 677778899999999988888877666 666654322210110 1112222 11122221111111110000 0
Q ss_pred CcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcH--HHHHHHHhhCCCCceEEEEEeeCCHhHHHH
Q 015129 159 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK--DQIYDIFQLLPAKVQVGVFSATMPPEALEI 230 (413)
Q Consensus 159 ~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 230 (413)
.++ ............ .+.-..+++||+||.--.+..++. ..+..++...|...-+|+..-..++.+.+.
T Consensus 102 ~d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ 172 (198)
T COG2109 102 ADI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIEL 172 (198)
T ss_pred HHH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHH
Confidence 022 111111111111 112234799999999987776644 566677777666666666555556555544
No 432
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.20 E-value=0.25 Score=43.38 Aligned_cols=144 Identities=19% Similarity=0.141 Sum_probs=69.8
Q ss_pred hcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEE-cCcchHHHHH
Q 015129 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACV-GGTSVREDQR 153 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 153 (413)
..|.=+++.|.||.|||..++-.+.+...... ..++|++.--. ..++..++-.... ++....+. +.....+..+
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~SlEm~-~~~l~~R~la~~s--~v~~~~i~~g~l~~~e~~~ 91 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGG--YPVLYFSLEMS-EEELAARLLARLS--GVPYNKIRSGDLSDEEFER 91 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEESSS--HHHHHHHHHHHHH--TSTHHHHHCCGCHHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcCCCC-HHHHHHHHHHHhh--cchhhhhhccccCHHHHHH
Confidence 34566899999999999887777766655432 38888887322 2333333322211 11111011 1112121111
Q ss_pred H-----HHcCCcEEEE-----ccHHHHHHHHcCCCCCCcceEEEeccchHHhcc----CcHHHHHHHHhhCC-----CCc
Q 015129 154 I-----LQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR----GFKDQIYDIFQLLP-----AKV 214 (413)
Q Consensus 154 ~-----~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~----~~~~~~~~~~~~~~-----~~~ 214 (413)
. ......++|. |++.+...++........+++||||=.|.+... +....+..+...+. .++
T Consensus 92 ~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i 171 (259)
T PF03796_consen 92 LQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNI 171 (259)
T ss_dssp HHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 1 0112334443 334444444321111255799999999987653 22233333322221 156
Q ss_pred eEEEEEeeC
Q 015129 215 QVGVFSATM 223 (413)
Q Consensus 215 ~~i~~SaT~ 223 (413)
.++++|...
T Consensus 172 ~vi~~sQln 180 (259)
T PF03796_consen 172 PVIALSQLN 180 (259)
T ss_dssp EEEEEEEBS
T ss_pred eEEEccccC
Confidence 677776654
No 433
>CHL00176 ftsH cell division protein; Validated
Probab=94.18 E-value=0.23 Score=49.37 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015129 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
.+++++.||+|+|||..+
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999875
No 434
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.16 E-value=0.43 Score=46.68 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=67.4
Q ss_pred hcccceEEEEccH----HHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CCCCCCCCCCCcEE
Q 015129 277 LAITQSVIFVNTR----RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLV 351 (413)
Q Consensus 277 ~~~~~~lif~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~v 351 (413)
..+..+.+-.|+. .+...+.+.|...|+.+.++.|.+....|.++++...+|+++++|.|- .+...+++.++-.|
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLV 388 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLV 388 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEE
Confidence 3556888999995 566677777777899999999999999999999999999999999997 56888999888888
Q ss_pred EEcc
Q 015129 352 INYD 355 (413)
Q Consensus 352 i~~~ 355 (413)
|...
T Consensus 389 IiDE 392 (677)
T COG1200 389 IIDE 392 (677)
T ss_pred EEec
Confidence 8643
No 435
>PRK08840 replicative DNA helicase; Provisional
Probab=94.15 E-value=0.5 Score=45.20 Aligned_cols=132 Identities=18% Similarity=0.083 Sum_probs=63.6
Q ss_pred CCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcE
Q 015129 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK 138 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
|+.+-.+.--....-+..|.-+++.|.||.|||..++-.+...... .+..++|...= --..|+..++-.... ++.
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~--~~~~v~~fSlE-Ms~~ql~~Rlla~~s--~v~ 273 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD--QDKPVLIFSLE-MPAEQLMMRMLASLS--RVD 273 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh--CCCeEEEEecc-CCHHHHHHHHHHhhC--CCC
Confidence 3333333333344445556778999999999998765444443222 12266666543 235555554433221 121
Q ss_pred EEEE-EcCcchHHHHHH------HHcCCcEEEE-----ccHHHHHHHHcCCCCCCcceEEEeccchHHh
Q 015129 139 VHAC-VGGTSVREDQRI------LQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 195 (413)
Q Consensus 139 ~~~~-~~~~~~~~~~~~------~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~ 195 (413)
...+ .|..+..++.+. +.....+.|- |...+....+........+++||||=.|.+.
T Consensus 274 ~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 274 QTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 1111 223333333221 1123456554 2334433222211112247899999999874
No 436
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.12 E-value=0.06 Score=47.69 Aligned_cols=43 Identities=16% Similarity=0.314 Sum_probs=30.1
Q ss_pred hcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHH
Q 015129 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 120 (413)
..+.+++++|+||||||..+ .+++..+... ..+++++-...++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT--TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc--ccceEEeccccce
Confidence 34789999999999999774 5556665554 2277777766554
No 437
>PF12846 AAA_10: AAA-like domain
Probab=94.10 E-value=0.056 Score=48.63 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=28.1
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
+.|+++.|+||+|||..+...+.+.+..+. .++++=|..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~---~~~i~D~~g~ 40 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGP---RVVIFDPKGD 40 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCC---CEEEEcCCch
Confidence 468999999999999887655544444443 7777755544
No 438
>PRK08006 replicative DNA helicase; Provisional
Probab=94.06 E-value=0.75 Score=44.15 Aligned_cols=118 Identities=19% Similarity=0.078 Sum_probs=59.6
Q ss_pred hhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEE-EcCcchHHH
Q 015129 73 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVRED 151 (413)
Q Consensus 73 ~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 151 (413)
-+..|.-+++.|.||.|||..++-.+...... .+..++|...= --..|+..++-.... ++....+ .|..+..++
T Consensus 220 Gl~~G~LiiIaarPgmGKTafalnia~~~a~~--~g~~V~~fSlE-M~~~ql~~Rlla~~~--~v~~~~i~~~~l~~~e~ 294 (471)
T PRK08006 220 GLQPSDLIIVAARPSMGKTTFAMNLCENAAML--QDKPVLIFSLE-MPGEQIMMRMLASLS--RVDQTRIRTGQLDDEDW 294 (471)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCeEEEEecc-CCHHHHHHHHHHHhc--CCCHHHhhcCCCCHHHH
Confidence 34456678999999999998766555443322 12266666543 334555554443222 2221111 233333333
Q ss_pred HHH------HHcCCcEEEE-----ccHHHHHHHHcCCCCCCcceEEEeccchHHh
Q 015129 152 QRI------LQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 195 (413)
Q Consensus 152 ~~~------~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~ 195 (413)
.+. +.....+.|- |+..+....+........+++||||=.|.+.
T Consensus 295 ~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 295 ARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 221 1133456654 3444433332211111247899999999875
No 439
>PRK07004 replicative DNA helicase; Provisional
Probab=94.05 E-value=0.39 Score=45.97 Aligned_cols=117 Identities=14% Similarity=0.059 Sum_probs=57.4
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEE-EEcCcchHHHH
Q 015129 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA-CVGGTSVREDQ 152 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 152 (413)
+..|.-+++.|.||+|||..++-.+...... .+..++++.. ---..|+..++-.... ++.... ..|..+..++.
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~--~~~~v~~fSl-EM~~~ql~~R~la~~~--~v~~~~i~~g~l~~~e~~ 284 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVE--YGLPVAVFSM-EMPGTQLAMRMLGSVG--RLDQHRMRTGRLTDEDWP 284 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHH--cCCeEEEEeC-CCCHHHHHHHHHHhhc--CCCHHHHhcCCCCHHHHH
Confidence 4456778999999999998766544433222 1225666644 2234444444432111 111111 12333333332
Q ss_pred HHH-----HcCCcEEEE-----ccHHHHHHHHcCCCCCCcceEEEeccchHHh
Q 015129 153 RIL-----QAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 195 (413)
Q Consensus 153 ~~~-----~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~ 195 (413)
+.. .....+.|. |+..+....++-......+++||+|=.|.+.
T Consensus 285 ~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 285 KLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 211 123456663 3444433322211112236899999999875
No 440
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=94.00 E-value=0.73 Score=44.66 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=74.3
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhc-ccCcEEEEEEcCcchHHHHHHHH
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGD-YLGVKVHACVGGTSVREDQRILQ 156 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
+-.+..-|---|||+. +.+++..+.....+-++.|++.-+--++-..+++...+. .++-......
T Consensus 203 kaTVFLVPRRHGKTWf-~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~------------- 268 (668)
T PHA03372 203 KATVFLVPRRHGKTWF-IIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN------------- 268 (668)
T ss_pred cceEEEecccCCceeh-HHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee-------------
Confidence 4567788999999987 455555666666666999999988766665555533211 1111111100
Q ss_pred cCCcEEEEccHH-----HHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCC-CCceEEEEEeeC
Q 015129 157 AGVHVVVGTPGR-----VFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AKVQVGVFSATM 223 (413)
Q Consensus 157 ~~~~iii~T~~~-----l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~ 223 (413)
++..|.+.-|+. +......+...-.+++++++||||.+ ....+..++..+. .+.++|.+|.|-
T Consensus 269 k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI----~~~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 269 KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI----KKDAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc----CHHHHHHhhhhhcccCceEEEEeCCC
Confidence 011222222211 11122334444566899999999976 3445556665543 467888888884
No 441
>PRK04328 hypothetical protein; Provisional
Probab=93.93 E-value=0.096 Score=45.70 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=35.4
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
.|..+++.+++|+|||..++-.+...+..+. +++|+. +.+-..+..+.++.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge---~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE---PGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC---cEEEEE-eeCCHHHHHHHHHHc
Confidence 4677899999999999877666665554443 677766 334455566666554
No 442
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.87 E-value=0.29 Score=46.65 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=33.9
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
|.-+++.+++|+|||..++..+...... +.+++|+..- +...|+..+..++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECc-CCHHHHHHHHHHc
Confidence 5678999999999998776554443332 2378888763 4455665555544
No 443
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.86 E-value=0.4 Score=45.72 Aligned_cols=117 Identities=15% Similarity=0.023 Sum_probs=57.9
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHH
Q 015129 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 153 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
+..|.-+++.|+||+|||..++-.+....... +..++|++.- .-..++.+++........... ...|.....++.+
T Consensus 192 ~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlE-m~~~~i~~R~~~~~~~v~~~~-~~~g~l~~~~~~~ 267 (434)
T TIGR00665 192 LQPSDLIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLE-MSAEQLAMRMLSSESRVDSQK-LRTGKLSDEDWEK 267 (434)
T ss_pred CCCCeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHH-hccCCCCHHHHHH
Confidence 44466789999999999987665554433321 2267776653 234555555444322221111 1122222222211
Q ss_pred H-----HHcCCcEEEE-----ccHHHHHHHHcCCCCCCcceEEEeccchHHh
Q 015129 154 I-----LQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 195 (413)
Q Consensus 154 ~-----~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~ 195 (413)
. ......+.|. |.+.+...++..... ..+++||||=.+.+.
T Consensus 268 ~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 268 LTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 1 1112345552 344454333321111 236899999998774
No 444
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.86 E-value=0.12 Score=50.80 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=30.0
Q ss_pred HHHCCCCCCcHHHHhhhhhhhc--CCcEEEeCCCCCcchHHhHHHHHHccc
Q 015129 55 IYAYGFEKPSAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 55 l~~~~~~~~~~~Q~~~~~~i~~--~~~~li~~~tGsGKT~~~~~~~~~~~~ 103 (413)
+.+.|+ .+.|...+..+.. ...++++||||||||.+. .+++..+.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 344554 4566666666554 456789999999999774 45555553
No 445
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.86 E-value=0.13 Score=49.36 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=30.0
Q ss_pred HHHCCCCCCcHHHHhhhhhhhc-CC-cEEEeCCCCCcchHHhHHHHHHccc
Q 015129 55 IYAYGFEKPSAIQQRGIVPFCK-GL-DVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 55 l~~~~~~~~~~~Q~~~~~~i~~-~~-~~li~~~tGsGKT~~~~~~~~~~~~ 103 (413)
+.+.|+ .+.|.+.+..+.. .+ -++++||||||||.+. .+++..+.
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 344454 5667777776655 33 4689999999999774 44555554
No 446
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.84 E-value=0.17 Score=51.67 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=15.8
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015129 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 487 ~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999875
No 447
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.83 E-value=0.25 Score=52.66 Aligned_cols=100 Identities=19% Similarity=0.152 Sum_probs=72.8
Q ss_pred EEEEeccccchHHHHHHH-H-HhhcccceEEEEccHHHHHHHHHHhhhC----CCeeEEecCCCCHHHHHHHHHHHhcCC
Q 015129 256 FYVNVEKEEWKLETLCDL-Y-ETLAITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGS 329 (413)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~-~-~~~~~~~~lif~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~ 329 (413)
.....+....|....... . .-..+.+++|.+|+..-|...++.+++. +..+..+++..+..++..+++.+.+|+
T Consensus 624 ~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~ 703 (1147)
T PRK10689 624 RLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK 703 (1147)
T ss_pred EEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC
Confidence 344445555665432211 1 1124578999999999999888877653 457788999999999999999999999
Q ss_pred CcEEEEcC-CCCCCCCCCCCcEEEEcc
Q 015129 330 SRVLITTD-LLARGIDVQQVSLVINYD 355 (413)
Q Consensus 330 ~~vli~t~-~~~~G~d~~~~~~vi~~~ 355 (413)
.+|+|+|. .+...+++.++.++|...
T Consensus 704 ~dIVVgTp~lL~~~v~~~~L~lLVIDE 730 (1147)
T PRK10689 704 IDILIGTHKLLQSDVKWKDLGLLIVDE 730 (1147)
T ss_pred CCEEEECHHHHhCCCCHhhCCEEEEec
Confidence 99999997 445556777888877543
No 448
>PRK05748 replicative DNA helicase; Provisional
Probab=93.82 E-value=0.48 Score=45.38 Aligned_cols=117 Identities=10% Similarity=0.042 Sum_probs=58.2
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEE-EEEcCcchHHHH
Q 015129 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH-ACVGGTSVREDQ 152 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 152 (413)
+..|.-++|.|.||+|||..++-.+...... .+..++|+.. -.-..|+..++-.... ++... ...|.....++.
T Consensus 200 ~~~G~livIaarpg~GKT~~al~ia~~~a~~--~g~~v~~fSl-Ems~~~l~~R~l~~~~--~v~~~~i~~~~l~~~e~~ 274 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVATK--TDKNVAIFSL-EMGAESLVMRMLCAEG--NIDAQRLRTGQLTDDDWP 274 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHHHh--CCCeEEEEeC-CCCHHHHHHHHHHHhc--CCCHHHhhcCCCCHHHHH
Confidence 4446678999999999998776555443322 1226666654 2334555555432211 11111 112232322222
Q ss_pred HH-----HHcCCcEEEE-----ccHHHHHHHHcCCCCCCcceEEEeccchHHh
Q 015129 153 RI-----LQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 195 (413)
Q Consensus 153 ~~-----~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~ 195 (413)
.. ...+..+.|. |++.+...++........+++||||=.|.+.
T Consensus 275 ~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 275 KLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 11 1123455553 3444443332211111247899999999874
No 449
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.81 E-value=0.18 Score=49.54 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=24.0
Q ss_pred cceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 182 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 182 ~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
+.+++|+||+=.-.|......+.+.+....++.-++.+|
T Consensus 488 ~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 488 DAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 357888899887766666666665555543344344443
No 450
>PRK09165 replicative DNA helicase; Provisional
Probab=93.80 E-value=0.56 Score=45.44 Aligned_cols=118 Identities=11% Similarity=0.042 Sum_probs=59.4
Q ss_pred hcCCcEEEeCCCCCcchHHhHHHHHHccccC------------CCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEE
Q 015129 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYG------------LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC 142 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~------------~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 142 (413)
..|.-++|.|.||+|||..++-.+.+..... ..+.+++|+.. -.-..|+..++-.......... ..
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~v~~~~-i~ 292 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSEISSSK-IR 292 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcCCCHHH-Hh
Confidence 3456689999999999987765544433221 12336777654 3345566665544322221111 11
Q ss_pred EcCcchHHHHHHHH-----cCCcEEEE-----ccHHHHHHHHcCCCCCCcceEEEeccchHHh
Q 015129 143 VGGTSVREDQRILQ-----AGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 195 (413)
Q Consensus 143 ~~~~~~~~~~~~~~-----~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~ 195 (413)
.|..+..++.+... ....+.|- |++.+....+.... ...+++||||=.|.+.
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 22333222222111 23345554 34444433332111 1237899999999775
No 451
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.22 Score=47.08 Aligned_cols=47 Identities=23% Similarity=0.329 Sum_probs=28.5
Q ss_pred ceEEEeccchHHhccC------c-HHHHHHHHhh---CCCCceEEEEEeeCCHhHHH
Q 015129 183 IKMFVLDEADEMLSRG------F-KDQIYDIFQL---LPAKVQVGVFSATMPPEALE 229 (413)
Q Consensus 183 ~~~iV~DE~h~~~~~~------~-~~~~~~~~~~---~~~~~~~i~~SaT~~~~~~~ 229 (413)
..+|+|||.+.+...- | ...+..++.. +..+.-+|.+.||--++..+
T Consensus 397 PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 397 PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 5789999999876321 1 1233333332 33455699999997665433
No 452
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.79 E-value=1.2 Score=42.97 Aligned_cols=78 Identities=5% Similarity=0.104 Sum_probs=63.8
Q ss_pred ccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC-CCCCC-------CCCCCcE
Q 015129 279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-LARGI-------DVQQVSL 350 (413)
Q Consensus 279 ~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~~~G~-------d~~~~~~ 350 (413)
.+.+||++|+++-+....+.|+..|+.+..+++..+..++..++.....++++++++|+- +.... ....+..
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 468999999999999999999999999999999999999999999999999999999972 22222 3456777
Q ss_pred EEEccC
Q 015129 351 VINYDL 356 (413)
Q Consensus 351 vi~~~~ 356 (413)
+|+...
T Consensus 131 iViDEa 136 (470)
T TIGR00614 131 IAVDEA 136 (470)
T ss_pred EEEeCC
Confidence 776543
No 453
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.73 E-value=0.35 Score=50.16 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=16.2
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015129 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
..+.++.||+|+|||..+-
T Consensus 199 ~~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred cCceEEECCCCCCHHHHHH
Confidence 3589999999999998764
No 454
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.64 E-value=0.14 Score=55.12 Aligned_cols=98 Identities=18% Similarity=0.133 Sum_probs=64.4
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEE--------EEEEcC-cc
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKV--------HACVGG-TS 147 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~--------~~~~~~-~~ 147 (413)
.++++|.|+.|||||.+..--++..+..+....++++++-|+.-+.++.+++........... ..+.|. ..
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L~~~~~~~~~~l~~~l~~~~~~~~~ 89 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRLGEWAVLDDAELRARLEALEGKRPD 89 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Confidence 578999999999999998877777776655455999999999999998888776543211000 000010 00
Q ss_pred hH-------HHHHHHHcCCcEEEEccHHHHHHHH
Q 015129 148 VR-------EDQRILQAGVHVVVGTPGRVFDMLR 174 (413)
Q Consensus 148 ~~-------~~~~~~~~~~~iii~T~~~l~~~~~ 174 (413)
.. ...+.+.+...+-|.|.++|...+.
T Consensus 90 ~~~l~~ar~l~~~~l~~~~~l~I~Ti~sf~~~l~ 123 (1141)
T TIGR02784 90 AAKLAEARRLFARALETPGGLKIQTIHAFCESLL 123 (1141)
T ss_pred hHHHHHHHHHHHHHHhCCCCceEeeHHHHHHHHH
Confidence 00 1122344566788999999876654
No 455
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.60 E-value=0.15 Score=48.84 Aligned_cols=40 Identities=15% Similarity=0.352 Sum_probs=23.7
Q ss_pred CCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 180 PDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 180 ~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
..++++.|+||+|.+....|.. +.+.++.-|.+..+|+-|
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNA-LLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNA-LLKTLEEPPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHHHHHH-HhcccccCccCeEEEEec
Confidence 4558999999999986555432 223333434454444433
No 456
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.053 Score=47.63 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=15.8
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015129 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
..|+++.+|||||||+.+
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 358999999999999876
No 457
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.55 E-value=0.091 Score=49.21 Aligned_cols=56 Identities=29% Similarity=0.268 Sum_probs=38.7
Q ss_pred cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEE
Q 015129 79 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACV 143 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 143 (413)
|+++.||||||||..++++-+... ...++|+=|.-++........+.. |..|.++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----~~s~vv~D~Kge~~~~t~~~r~~~----G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----PGSVVVLDPKGENFELTSEHRRAL----GRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----CCCEEEEccchhHHHHHHHHHHHc----CCeEEEEc
Confidence 579999999999988766544321 238888888888887666555543 44454443
No 458
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.54 E-value=0.12 Score=45.46 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=38.3
Q ss_pred hcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhh
Q 015129 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~ 132 (413)
-.|+.+++.|++|+|||..++-.+...+..+. +++|++- .+...+..+.+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge---~vlyvs~-~e~~~~l~~~~~~~g 74 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGE---PVLYVST-EESPEELLENARSFG 74 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCC---cEEEEEe-cCCHHHHHHHHHHcC
Confidence 35788999999999999887766666655533 7777765 444666666666543
No 459
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.54 E-value=0.24 Score=42.51 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=28.6
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccC---CCceeEEEEcCcH
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTR 118 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~liv~P~~ 118 (413)
.|.-+.|.||+|+|||..++..+......+ ....+++|+..-.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 366789999999999987765555443332 0123778877643
No 460
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.51 E-value=0.49 Score=49.25 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=16.2
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015129 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
..+.++.||+|.|||..+-
T Consensus 194 ~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3689999999999997754
No 461
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=93.51 E-value=2.4 Score=34.48 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=72.3
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCc-----chH-HH
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGT-----SVR-ED 151 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~ 151 (413)
.-+.|--..|-|||.+++-.++++.-.+. +++|+-=.+.-...=...+-+... ++.......+. +.. ..
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~G~---rV~iiQFlKg~~~~GE~~~l~~~~--~v~~~~~g~~~~~~~~~~~~~~ 96 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQGT---PVLIVQFLKGGIQQGPDRPIQLGQ--NLDWVRCDLPRCLDTPHLDESE 96 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcCCC---EEEEEEEecCCCcchHHHHHHhCC--CcEEEECCCCCeeeCCCcCHHH
Confidence 34566677799999999888888776665 777775544321111111111111 23322211110 000 00
Q ss_pred HHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcH--HHHHHHHhhCCCCceEEEEEeeCCHhHHH
Q 015129 152 QRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK--DQIYDIFQLLPAKVQVGVFSATMPPEALE 229 (413)
Q Consensus 152 ~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 229 (413)
. ......++..+. ...-..+++||+||+-...+.++. ..+..++...|...-+|+..-.+++.+.+
T Consensus 97 ~-----------~~~~~~~~~a~~-~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie 164 (178)
T PRK07414 97 K-----------KALQELWQYTQA-VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLA 164 (178)
T ss_pred H-----------HHHHHHHHHHHH-HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHH
Confidence 0 011111112111 122344799999999988877643 66777777777777777766666665544
No 462
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.45 E-value=0.098 Score=51.26 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=29.9
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEee
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 222 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 222 (413)
.+..++|+|||-..+|......++..+..+..+ +.+++=|.
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAH 661 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAH 661 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEeh
Confidence 346799999999988888788888888766655 34444443
No 463
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.36 E-value=0.11 Score=43.52 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=23.6
Q ss_pred cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015129 79 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
-++++||||||||... ..++..+.... +.+++.+-...+
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~~~~-~~~i~t~e~~~E 41 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYINKNK-THHILTIEDPIE 41 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhhhcC-CcEEEEEcCCcc
Confidence 3689999999999774 44444443322 225555554333
No 464
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.35 E-value=0.14 Score=45.01 Aligned_cols=38 Identities=18% Similarity=0.046 Sum_probs=27.9
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
.|.-+++.|++|+|||..++-.+.+.+..+ .+++|+.-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~G---e~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRG---NPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCC---CcEEEEEe
Confidence 467789999999999987766665544433 37788774
No 465
>PRK08760 replicative DNA helicase; Provisional
Probab=93.34 E-value=0.47 Score=45.63 Aligned_cols=117 Identities=14% Similarity=0.068 Sum_probs=58.5
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHH
Q 015129 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 153 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
+..|.-++|.|.||+|||..++-.+....... +.+++|.+.- .-..|+..++........... ...|..+..++.+
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~~-i~~g~l~~~e~~~ 301 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFSME-MSASQLAMRLISSNGRINAQR-LRTGALEDEDWAR 301 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEecc-CCHHHHHHHHHHhhCCCcHHH-HhcCCCCHHHHHH
Confidence 34466789999999999987765554433221 2266666552 234556555544322211111 1122222222221
Q ss_pred H-----HHcCCcEEEE-----ccHHHHHHHHcCCCCCCcceEEEeccchHHh
Q 015129 154 I-----LQAGVHVVVG-----TPGRVFDMLRRQSLRPDYIKMFVLDEADEML 195 (413)
Q Consensus 154 ~-----~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~ 195 (413)
. .-....+.|. |++.+....+.... ...+++||||=.+.+.
T Consensus 302 ~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 302 VTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 1 1122455554 34444333322111 1237899999998774
No 466
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=93.32 E-value=0.13 Score=50.54 Aligned_cols=68 Identities=19% Similarity=-0.028 Sum_probs=53.1
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC---CCceeEEEEcCcHHHHHHHHHHHH
Q 015129 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~liv~P~~~l~~q~~~~~~ 129 (413)
.+-..|..|+...+..+-.++.+|+|+|||++.+.++-..+.+. ...-+++++|-|..-+.|.-..+-
T Consensus 378 ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred eecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHH
Confidence 35556999999988888899999999999999887776665543 223489999999888888665554
No 467
>PRK09087 hypothetical protein; Validated
Probab=93.25 E-value=0.27 Score=42.14 Aligned_cols=40 Identities=8% Similarity=0.066 Sum_probs=23.7
Q ss_pred eEEEeccchHHhccCcHHHHHHHHhhCCC-CceEEEEEeeCCH
Q 015129 184 KMFVLDEADEMLSRGFKDQIYDIFQLLPA-KVQVGVFSATMPP 225 (413)
Q Consensus 184 ~~iV~DE~h~~~~~~~~~~~~~~~~~~~~-~~~~i~~SaT~~~ 225 (413)
+++++|++|.+. .....+..+++.+.. ..++++.|.++++
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPS 129 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChH
Confidence 379999999763 224556666665554 4445544444444
No 468
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.59 Score=45.46 Aligned_cols=55 Identities=24% Similarity=0.304 Sum_probs=35.3
Q ss_pred hhccCcccCCCCHHHHHHHHH---CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHh
Q 015129 37 EVYDSFDAMGLQENLLRGIYA---YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~---~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~ 94 (413)
-+-.+|++.|=-+++...|++ ++...|-.+.... +...+.+++-+|+|.|||+++
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH
Confidence 344567777755566666653 2444444444333 234689999999999999876
No 469
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.22 E-value=0.13 Score=49.60 Aligned_cols=49 Identities=24% Similarity=0.342 Sum_probs=37.1
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
.++++.||||||||..++++.+-. . .+ .++|.=|..++........++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~--~~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y--PG-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c--cC-CEEEEECCCcHHHHHHHHHHHC
Confidence 479999999999999887776532 1 12 7888888888887777666654
No 470
>PRK14701 reverse gyrase; Provisional
Probab=93.11 E-value=0.71 Score=51.02 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=53.3
Q ss_pred cccceEEEEccHHHHHHHHHHhhhC------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 015129 278 AITQSVIFVNTRRKVDWLTDKMRSR------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 338 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~ 338 (413)
.+.+++|.+|+++-+..+.+.|+.. +..+..+||+++..++.++++.+.+|+.+|||+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999998888762 456788999999999999999999999999999983
No 471
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.08 E-value=2 Score=38.54 Aligned_cols=132 Identities=21% Similarity=0.306 Sum_probs=68.6
Q ss_pred cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcC
Q 015129 79 DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 158 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
-++++|-.|+|||.+.--.+......+. ++++.+.- +--.-..++++.|+...|..+.....|.+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~---~VllaA~D-TFRAaAiEQL~~w~er~gv~vI~~~~G~D----------- 205 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGK---SVLLAAGD-TFRAAAIEQLEVWGERLGVPVISGKEGAD----------- 205 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCC---eEEEEecc-hHHHHHHHHHHHHHHHhCCeEEccCCCCC-----------
Confidence 4789999999999875443333333332 55554442 22222334455555555666554322211
Q ss_pred CcEEEEccHH-HHHHHHcCCCCCCcceEEEeccchHHhccC-cHHHHHHHHhhCCCCc------eEEEEEeeCCHhHHHH
Q 015129 159 VHVVVGTPGR-VFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQLLPAKV------QVGVFSATMPPEALEI 230 (413)
Q Consensus 159 ~~iii~T~~~-l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~-~~~~~~~~~~~~~~~~------~~i~~SaT~~~~~~~~ 230 (413)
|.. .++.+.+. ...+++++++|=|-++-+.. .-..+.++.+.+.+.. -++.+-||...+....
T Consensus 206 -------pAaVafDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 206 -------PAAVAFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ 276 (340)
T ss_pred -------cHHHHHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH
Confidence 111 12222211 12236788888887764332 2345555555544322 3555589988876666
Q ss_pred HHHh
Q 015129 231 TRKF 234 (413)
Q Consensus 231 ~~~~ 234 (413)
.+.|
T Consensus 277 Ak~F 280 (340)
T COG0552 277 AKIF 280 (340)
T ss_pred HHHH
Confidence 6655
No 472
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.04 E-value=0.064 Score=43.95 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=27.1
Q ss_pred HHcCCcEEEEccHHHHHHHHcCC---CCCCcceEEEeccchHHhcc
Q 015129 155 LQAGVHVVVGTPGRVFDMLRRQS---LRPDYIKMFVLDEADEMLSR 197 (413)
Q Consensus 155 ~~~~~~iii~T~~~l~~~~~~~~---~~~~~~~~iV~DE~h~~~~~ 197 (413)
....++|+|+++..|++-..... .... -.+|||||||.+.+.
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~~~~~~-~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLFGIDLK-DNIVIFDEAHNLEDA 160 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHCT--CC-CEEEEETTGGGCGGG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhcccccc-CcEEEEecccchHHH
Confidence 34568999999998865433211 2233 478999999987643
No 473
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.43 Score=42.30 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=39.0
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccC---CCceeEEEEcC-----------cHHHHHHHHHHHHHhhcccCcEEEEE
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAP-----------TRELAQQIEKVMRALGDYLGVKVHAC 142 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~liv~P-----------~~~l~~q~~~~~~~~~~~~~~~~~~~ 142 (413)
++-+++.||+|+|||.. +-++++.+.-. ....-.++=.. +--|+.++++.+.++....+.-+-++
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45689999999999954 56666666321 11112333333 33456666666777766655555444
Q ss_pred E
Q 015129 143 V 143 (413)
Q Consensus 143 ~ 143 (413)
.
T Consensus 256 I 256 (423)
T KOG0744|consen 256 I 256 (423)
T ss_pred e
Confidence 3
No 474
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.88 E-value=0.45 Score=46.22 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=30.4
Q ss_pred hhccCcccCCCCHHHHHHHHHCC--CCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHh
Q 015129 37 EVYDSFDAMGLQENLLRGIYAYG--FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~--~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~ 94 (413)
.+..+|+++.-.+.....+...- +..+..++... ....+++++.||+|+|||..+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 34566777765555554443210 11222222211 122467999999999999875
No 475
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.83 E-value=0.25 Score=41.10 Aligned_cols=63 Identities=19% Similarity=0.101 Sum_probs=38.6
Q ss_pred hhhhhh-cCCcEEEeCCCCCcchHHhHHHHHHccccC-------CCceeEEEEcCcHHHHHHHHHHHHHhhc
Q 015129 70 GIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQLDYG-------LVQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 70 ~~~~i~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~liv~P~~~l~~q~~~~~~~~~~ 133 (413)
++.-+. .|.-+++.||+|+|||...+-.+....... ....+++|+..-.. ..++.+++..+..
T Consensus 24 li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 24 LIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp EETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred eECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 333343 577899999999999988665555444311 13458888877554 6677777777653
No 476
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=0.57 Score=43.59 Aligned_cols=78 Identities=22% Similarity=0.200 Sum_probs=43.7
Q ss_pred ceEEEeccchHHhccC--------cHHHHHHHHhh----CCCCceEEEEEeeCCHh-HHHHHHHhcCCCEEEEecCCccc
Q 015129 183 IKMFVLDEADEMLSRG--------FKDQIYDIFQL----LPAKVQVGVFSATMPPE-ALEITRKFMNKPVRILVKRDELT 249 (413)
Q Consensus 183 ~~~iV~DE~h~~~~~~--------~~~~~~~~~~~----~~~~~~~i~~SaT~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 249 (413)
+.+|++||+|.+...- .....+.++.. .....++++++||--+. ..+.+.+.+.
T Consensus 246 PsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~------------- 312 (428)
T KOG0740|consen 246 PSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFV------------- 312 (428)
T ss_pred CeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhh-------------
Confidence 5789999999877321 11222222222 23355889999996543 3233332222
Q ss_pred ccCeEEEEEEeccccchHHHHHHHHHhh
Q 015129 250 LEGIKQFYVNVEKEEWKLETLCDLYETL 277 (413)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
+..|...+.......++..++...
T Consensus 313 ----kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 313 ----KRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred ----ceeeecCCCHHHHHHHHHHHHHhC
Confidence 234455556566777777777765
No 477
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.79 E-value=0.11 Score=45.65 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=22.1
Q ss_pred hhhhhhhcCCcEEEeCCCCCcchHHhHH
Q 015129 69 RGIVPFCKGLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 69 ~~~~~i~~~~~~li~~~tGsGKT~~~~~ 96 (413)
++...+..|.++++.||+|+|||..+..
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 3444556689999999999999987643
No 478
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.77 E-value=0.15 Score=46.04 Aligned_cols=55 Identities=18% Similarity=0.122 Sum_probs=38.3
Q ss_pred CCcHHHHhhhhh-hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHH
Q 015129 62 KPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120 (413)
Q Consensus 62 ~~~~~Q~~~~~~-i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 120 (413)
.+.+.|..-+.. +..+++++++++||||||.. +.+++..+.... +++.+=.+.++
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~~---rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPEE---RIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCchh---cEEEEeccccc
Confidence 455666544444 55689999999999999966 566666655444 77777776664
No 479
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.69 E-value=0.25 Score=42.37 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=35.7
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
.|..+++.+++|+|||..++-.+...+..+. +++|+.-. ....+..+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~---~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGE---KAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEECC-CCHHHHHHHHHHc
Confidence 3667899999999999776655555444433 77787664 3466666666654
No 480
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.67 E-value=0.6 Score=48.39 Aligned_cols=20 Identities=30% Similarity=0.255 Sum_probs=16.8
Q ss_pred CCcEEEeCCCCCcchHHhHH
Q 015129 77 GLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~ 96 (413)
..+.++.||+|.|||.++-.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred cCCeEEECCCCCCHHHHHHH
Confidence 46899999999999987643
No 481
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.63 E-value=0.19 Score=46.21 Aligned_cols=42 Identities=12% Similarity=0.270 Sum_probs=27.0
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 120 (413)
+..++++||||||||... .+++..+.... ..+++.+-...+.
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~~-~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKNA-AGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcCC-CCEEEEEcCChhh
Confidence 577899999999999774 44454443222 2366666554443
No 482
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.60 E-value=4.4 Score=33.88 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=51.8
Q ss_pred cccceEEEEccHHHHHHHHHHhhhC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC-----C-CCCCCCCC
Q 015129 278 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----L-ARGIDVQQ 347 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~-~~G~d~~~ 347 (413)
.+.+++|.+++.+.+......+... +..+..++|+.+..+.....+ +..+|+|+|+- + ..-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4458999999999888877666543 667788888887655433322 57789999962 1 22256677
Q ss_pred CcEEEEccC
Q 015129 348 VSLVINYDL 356 (413)
Q Consensus 348 ~~~vi~~~~ 356 (413)
++++|..+.
T Consensus 144 l~~lIvDE~ 152 (203)
T cd00268 144 VKYLVLDEA 152 (203)
T ss_pred CCEEEEeCh
Confidence 888876544
No 483
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.59 E-value=1 Score=40.89 Aligned_cols=39 Identities=10% Similarity=0.229 Sum_probs=24.9
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
...+++|+||+|.+.... ...+.+.++.-++...++++|
T Consensus 92 ~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEEEEe
Confidence 457899999999875433 445555555555555555544
No 484
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.55 E-value=0.12 Score=44.47 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=18.3
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHcc
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~ 102 (413)
++.+++.||.|+|||.. +..+...+
T Consensus 20 ~~~~~l~G~rg~GKTsL-l~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL-LKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHH-HHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHH-HHHHHHHh
Confidence 47889999999999975 34444443
No 485
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=92.49 E-value=0.17 Score=42.63 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=19.7
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccc
Q 015129 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~ 103 (413)
+.+..++++.|+||||||......+...+.
T Consensus 35 l~~~~h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 35 LKKNPHLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp GGGS-SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred cCCCceEEEEcCCCCCccHHHHHHHHHHHH
Confidence 445569999999999999876555555444
No 486
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.48 E-value=0.32 Score=50.34 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=20.5
Q ss_pred HHhhhhhhh----c--CCcEEEeCCCCCcchHHh
Q 015129 67 QQRGIVPFC----K--GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 67 Q~~~~~~i~----~--~~~~li~~~tGsGKT~~~ 94 (413)
|.+-+..+. + ..+.++.||+|+|||..+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 555555543 2 368999999999999775
No 487
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.44 E-value=0.85 Score=45.28 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.1
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015129 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
++-+++.||+|+|||.++
T Consensus 110 ~~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 110 KRILLITGPSGCGKSTTI 127 (637)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 344899999999999875
No 488
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=92.40 E-value=0.17 Score=42.81 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=27.6
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCc
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 117 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~ 117 (413)
.|.-+.+.||+|+|||..++..+...... +.+++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 45678999999999998876555544433 2377777664
No 489
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.36 E-value=0.42 Score=36.27 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=32.6
Q ss_pred EEeCCCCCcchHHhHHHHHHccccCCCceeEEEE-----cCcHHHHHHHHHHHHHh
Q 015129 81 IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL-----APTRELAQQIEKVMRAL 131 (413)
Q Consensus 81 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv-----~P~~~l~~q~~~~~~~~ 131 (413)
-+.|+||+|||+++-+.+-.....+....-+... .|....+.+..++++.+
T Consensus 57 SfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~ 112 (127)
T PF06309_consen 57 SFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSW 112 (127)
T ss_pred EeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHH
Confidence 4799999999999877766655555544444433 34445555555555554
No 490
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.35 E-value=0.64 Score=48.42 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=63.9
Q ss_pred cccceEEEEccHHHHH----HHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CCCCCCCCCCCcEEE
Q 015129 278 AITQSVIFVNTRRKVD----WLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~----~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 352 (413)
.++.|.|.+|+.=-|+ .+.+.++...+++..++.=.+.++...+++..++|+++|+|.|- .++.++-+.++-.+|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 4467899999965555 45555555578889999989999999999999999999999996 789999999999988
Q ss_pred Ec
Q 015129 353 NY 354 (413)
Q Consensus 353 ~~ 354 (413)
+.
T Consensus 722 ID 723 (1139)
T COG1197 722 ID 723 (1139)
T ss_pred Ee
Confidence 53
No 491
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.20 E-value=1.1 Score=40.70 Aligned_cols=54 Identities=19% Similarity=0.336 Sum_probs=29.9
Q ss_pred CcceEEEeccchHHhcc-CcHHHHHHHHhhC------CCCceEEEEEeeCCHhHHHHHHHh
Q 015129 181 DYIKMFVLDEADEMLSR-GFKDQIYDIFQLL------PAKVQVGVFSATMPPEALEITRKF 234 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~-~~~~~~~~~~~~~------~~~~~~i~~SaT~~~~~~~~~~~~ 234 (413)
.++++||+|=+-+.... ..-..+.++.... .+...++.++||...+.......+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 34689999988764322 1223444444322 233457888999766544444444
No 492
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.17 E-value=0.26 Score=48.60 Aligned_cols=58 Identities=19% Similarity=0.052 Sum_probs=42.8
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEE
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACV 143 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 143 (413)
..++++.||||||||..+++|-+-.. ...++|+=|.-++........++. |..|..+.
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~-----~~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vfd 215 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFW-----EDSVVVHDIKLENYELTSGWREKQ----GQKVFVWE 215 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhC-----CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEe
Confidence 35899999999999999887766542 237888888889887777666654 55555544
No 493
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.16 E-value=0.22 Score=48.17 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=38.1
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
|.-+++.+|+|+|||..++..+...+.++. +++|+. .-+...|....++.+
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge---~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKE---RAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEE-eeCCHHHHHHHHHHc
Confidence 467899999999999887766666554443 788876 456677877777765
No 494
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.15 E-value=0.25 Score=44.62 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=20.5
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHcc
Q 015129 74 FCKGLDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~ 102 (413)
+..+.+++++||||||||... .+++..+
T Consensus 141 v~~~~~ili~G~tGsGKTTll-~al~~~~ 168 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFL-KSLVDEI 168 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHH-HHHHccC
Confidence 345889999999999999764 3344433
No 495
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.04 E-value=0.26 Score=45.00 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=37.7
Q ss_pred HHHHCCCCCCcHHHHhhhhhhhc-CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHH
Q 015129 54 GIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120 (413)
Q Consensus 54 ~l~~~~~~~~~~~Q~~~~~~i~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 120 (413)
.+.+.|+ +.+.+...+..+.+ +.+++++++||+|||... .+++..+.. ..+++++-.+.++
T Consensus 156 ~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~~---~~riv~iEd~~El 217 (340)
T TIGR03819 156 ELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVAP---DERIVLVEDAAEL 217 (340)
T ss_pred HHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCCC---CCcEEEECCccee
Confidence 3444443 34556666665544 679999999999999653 344444332 2366666666565
No 496
>COG1485 Predicted ATPase [General function prediction only]
Probab=92.02 E-value=3.6 Score=37.20 Aligned_cols=110 Identities=13% Similarity=0.121 Sum_probs=60.2
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHc
Q 015129 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 157 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
+.+-+.|+.|.|||..+ -...+.+.-.. +.+ ++.-.-+.++.+++..+. |.
T Consensus 66 ~GlYl~GgVGrGKT~LM-D~Fy~~lp~~~-k~R----~HFh~FM~~vH~~l~~l~-----------g~------------ 116 (367)
T COG1485 66 RGLYLWGGVGRGKTMLM-DLFYESLPGER-KRR----LHFHRFMARVHQRLHTLQ-----------GQ------------ 116 (367)
T ss_pred ceEEEECCCCccHHHHH-HHHHhhCCccc-ccc----ccHHHHHHHHHHHHHHHc-----------CC------------
Confidence 67899999999999753 22222222211 112 444556666666666643 11
Q ss_pred CCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHh-hCCCCceEEEEEeeCCHhHH
Q 015129 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ-LLPAKVQVGVFSATMPPEAL 228 (413)
Q Consensus 158 ~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~-~~~~~~~~i~~SaT~~~~~~ 228 (413)
.+.+-.. ..++. .+.+++.+||.| +.+.+-.-.+.+++. .+..++.++..|-|+|.++.
T Consensus 117 -~dpl~~i---A~~~~-------~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY 176 (367)
T COG1485 117 -TDPLPPI---ADELA-------AETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNLY 176 (367)
T ss_pred -CCccHHH---HHHHH-------hcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhc
Confidence 1111111 11222 225789999999 344443334444443 34557888888888876543
No 497
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.01 E-value=1.4 Score=39.17 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=30.7
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCC
Q 015129 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 224 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 224 (413)
...+++|+|++|.+.... ...+.++++.-+.+..++++|..+.
T Consensus 94 ~~~kv~ii~~ad~mt~~A-aNaLLK~LEEPp~~~~fiL~~~~~~ 136 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDA-ISAFLKVLEDPPQHGVIILTSAKPQ 136 (290)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHhhcCCCCeEEEEEeCChh
Confidence 457899999999875444 5666677777666776777666654
No 498
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=91.96 E-value=0.83 Score=47.06 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=15.6
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015129 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
+..+++.||+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999775
No 499
>PRK13764 ATPase; Provisional
Probab=91.92 E-value=0.32 Score=47.75 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=20.4
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccc
Q 015129 76 KGLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 103 (413)
.+++++++||||||||..+ .+++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3678999999999999764 45555544
No 500
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.92 E-value=1.3 Score=41.41 Aligned_cols=49 Identities=29% Similarity=0.221 Sum_probs=29.3
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCc-HHHHHHHHH
Q 015129 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT-RELAQQIEK 126 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~-~~l~~q~~~ 126 (413)
+...-++|.+|+|||.+. .-++.........+.++++-.+ ...+...+.
T Consensus 175 ~gSlYVsG~PGtgkt~~l-~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTALL-SRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CcceEeeCCCCcchHHHH-HHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 467899999999999774 3344444444444344554443 244444433
Done!