BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015133
         (412 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RKG|A Chain A, Structural And Functional Characterization Of The Yeast
           Mg2+ Channel Mrs2
          Length = 261

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 127/306 (41%), Gaps = 76/306 (24%)

Query: 39  SRVEEVGKHVIMRRTGLPARDLRVLD-PLLSYPSSILGRERAIVINLEHIKAIVTAKEVL 97
           S  E+  K   +    L  RDLR +D   +    +I+ +   IVINL HIKA++   +V 
Sbjct: 30  SMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVY 89

Query: 98  MLYSTNPLVVQFVQDLQHRISSLQALSTQQAGERDEMEREDKAEANLSGPSQHTLRRRAS 157
           +  +TNP                                   A A LS    + L  + S
Sbjct: 90  VFDTTNP----------------------------------SAAAKLSVL-MYDLESKLS 114

Query: 158 ISSNERKDDAPETSVVAGPKVLAFEFRALESCLESACRCLDSETRTLEEEAYPALDELTT 217
            + N  +                +E RALES   +    L+++ +   +     L++L  
Sbjct: 115 STKNNSQ---------------FYEHRALESIFINVMSALETDFKLHSQICIQILNDLEN 159

Query: 218 KISTLNLERVRQIKSR-LVAINGRVQKVRDEIEHLLDDDNDMAEMYLTEKLNAXXXXXXX 276
           +++ L L  +  IKS+ L     +   +RD ++ LL++D+D+A MYLT K          
Sbjct: 160 EVNRLKLRHLL-IKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVK---------- 208

Query: 277 XXXXXXXXXXXXFTSFKPNVEELEMLLEAYFAQIDGILQKLSDMSEYVDDTEDCINIMLD 336
                         S K N  +LEML+E Y+ Q D  +Q+   + + +  TE+ +NI+LD
Sbjct: 209 -------------KSPKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILD 255

Query: 337 DTQNQL 342
             +N L
Sbjct: 256 ANRNSL 261


>pdb|3H8E|A Chain A, Low Ph Native Structure Of Leucine Aminopeptidase From
           Pseud Putida
 pdb|3H8E|B Chain B, Low Ph Native Structure Of Leucine Aminopeptidase From
           Pseud Putida
 pdb|3H8F|A Chain A, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8F|B Chain B, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8F|C Chain C, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8F|D Chain D, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8F|E Chain E, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8F|F Chain F, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|F Chain F, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|A Chain A, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|B Chain B, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|C Chain C, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|D Chain D, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|E Chain E, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
          Length = 497

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 19  PRPRKGMGLRTWLVVSESGQSRVEEVGKHVIMRRTGLP-ARDLRVLDPLLSYPS 71
           PR  K    +  L+  ++GQ+ VE   KH     TG+   RDL  L P L +PS
Sbjct: 151 PRALK----KVTLLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPS 200


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,959,985
Number of Sequences: 62578
Number of extensions: 351605
Number of successful extensions: 920
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 10
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)