Query 015133
Match_columns 412
No_of_seqs 223 out of 1533
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:25:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 4.4E-78 9.4E-83 589.9 38.0 351 17-411 54-413 (414)
2 COG0598 CorA Mg2+ and Co2+ tra 100.0 3.8E-35 8.2E-40 291.4 29.7 275 28-410 33-322 (322)
3 TIGR00383 corA magnesium Mg(2+ 100.0 1.8E-33 3.8E-38 278.8 32.2 280 25-410 24-318 (318)
4 PRK09546 zntB zinc transporter 100.0 5.2E-33 1.1E-37 276.4 32.9 274 26-410 35-324 (324)
5 PRK11085 magnesium/nickel/coba 100.0 2.5E-29 5.4E-34 247.7 30.3 276 27-410 25-316 (316)
6 PF01544 CorA: CorA-like Mg2+ 100.0 2.3E-28 5.1E-33 237.7 27.9 274 27-406 3-292 (292)
7 PRK11085 magnesium/nickel/coba 95.4 3.3 7.2E-05 41.3 22.3 184 181-409 128-312 (316)
8 PF10267 Tmemb_cc2: Predicted 93.9 6.8 0.00015 40.3 18.8 70 309-384 299-377 (395)
9 PF07332 DUF1469: Protein of u 90.5 2.9 6.2E-05 35.3 9.7 54 317-371 9-62 (121)
10 PF02656 DUF202: Domain of unk 90.3 2 4.4E-05 32.9 7.8 70 335-409 4-73 (73)
11 PF01544 CorA: CorA-like Mg2+ 89.6 10 0.00023 36.3 14.1 64 305-375 203-268 (292)
12 PRK09546 zntB zinc transporter 84.0 47 0.001 32.9 18.2 98 303-408 220-319 (324)
13 COG0598 CorA Mg2+ and Co2+ tra 82.2 56 0.0012 32.5 17.2 100 298-408 213-317 (322)
14 TIGR00383 corA magnesium Mg(2+ 79.9 64 0.0014 31.7 17.2 59 304-368 215-277 (318)
15 PF05478 Prominin: Prominin; 79.1 1.2E+02 0.0026 34.3 18.5 21 355-375 429-449 (806)
16 PF04163 Tht1: Tht1-like nucle 76.6 1.2E+02 0.0025 32.8 18.7 55 300-354 392-448 (544)
17 COG3462 Predicted membrane pro 76.3 17 0.00037 30.4 7.6 52 338-393 4-60 (117)
18 PF10856 DUF2678: Protein of u 76.2 2.5 5.5E-05 35.6 2.8 40 346-389 31-70 (118)
19 PRK15348 type III secretion sy 75.6 3.2 7E-05 39.9 3.8 59 349-407 184-248 (249)
20 PF11286 DUF3087: Protein of u 75.3 9.2 0.0002 34.4 6.3 54 348-410 23-76 (165)
21 TIGR02230 ATPase_gene1 F0F1-AT 74.8 7.8 0.00017 32.0 5.3 27 348-374 44-70 (100)
22 PF10805 DUF2730: Protein of u 71.4 20 0.00044 29.8 7.2 51 197-250 40-90 (106)
23 PF07798 DUF1640: Protein of u 68.9 90 0.002 28.2 18.7 31 331-366 143-173 (177)
24 PF10272 Tmpp129: Putative tra 66.7 12 0.00027 37.9 5.8 43 329-371 19-61 (358)
25 PF04136 Sec34: Sec34-like fam 65.2 83 0.0018 28.0 10.3 34 224-257 27-60 (157)
26 PF04341 DUF485: Protein of un 62.7 72 0.0016 25.6 8.6 27 378-408 52-78 (91)
27 PRK02935 hypothetical protein; 62.4 64 0.0014 26.9 8.1 25 381-405 36-60 (110)
28 TIGR01478 STEVOR variant surfa 61.5 23 0.0005 34.7 6.3 14 244-257 112-125 (295)
29 PF06210 DUF1003: Protein of u 59.7 25 0.00053 29.5 5.5 52 351-404 3-55 (108)
30 KOG3850 Predicted membrane pro 57.4 2.3E+02 0.005 29.1 17.7 11 185-195 261-271 (455)
31 PTZ00370 STEVOR; Provisional 56.0 32 0.0007 33.7 6.3 15 243-257 110-124 (296)
32 KOG3208 SNARE protein GS28 [In 54.7 1.9E+02 0.0042 27.3 15.1 29 223-251 87-115 (231)
33 PF13042 DUF3902: Protein of u 53.0 35 0.00076 30.2 5.4 33 336-371 59-91 (161)
34 PF01102 Glycophorin_A: Glycop 52.6 35 0.00076 29.3 5.4 29 366-396 53-81 (122)
35 PF03904 DUF334: Domain of unk 51.9 2.2E+02 0.0047 27.1 17.3 23 338-363 146-168 (230)
36 PF04156 IncA: IncA protein; 51.2 22 0.00047 32.3 4.3 20 348-367 6-25 (191)
37 PF05360 YiaAB: yiaA/B two hel 51.1 37 0.0008 24.6 4.5 40 348-392 3-42 (53)
38 PF05478 Prominin: Prominin; 50.9 4.2E+02 0.009 30.0 17.9 25 379-403 408-432 (806)
39 COG5415 Predicted integral mem 48.2 2.2E+02 0.0048 26.8 10.1 18 348-366 44-61 (251)
40 PF11368 DUF3169: Protein of u 48.2 55 0.0012 31.3 6.7 30 338-367 4-33 (248)
41 PF06570 DUF1129: Protein of u 48.2 53 0.0012 30.4 6.4 15 106-120 6-20 (206)
42 PF10157 DUF2365: Uncharacteri 48.2 2E+02 0.0043 25.5 12.2 22 308-329 126-147 (149)
43 PF11023 DUF2614: Protein of u 47.9 1.2E+02 0.0025 25.7 7.5 25 381-405 35-59 (114)
44 PF02060 ISK_Channel: Slow vol 46.9 27 0.00059 30.0 3.7 50 359-408 14-70 (129)
45 PF06127 DUF962: Protein of un 46.0 1.4E+02 0.003 24.2 7.7 19 326-344 3-21 (95)
46 TIGR02132 phaR_Bmeg polyhydrox 45.9 1E+02 0.0022 28.1 7.4 53 195-252 82-134 (189)
47 PF13273 DUF4064: Protein of u 44.9 39 0.00084 27.4 4.4 26 345-370 4-29 (100)
48 PF10267 Tmemb_cc2: Predicted 44.3 2.2E+02 0.0047 29.5 10.5 13 334-346 306-318 (395)
49 PRK12659 putative monovalent c 44.1 2E+02 0.0043 24.4 8.8 27 337-364 21-47 (117)
50 PF11902 DUF3422: Protein of u 44.0 4E+02 0.0086 27.8 21.8 32 305-336 302-333 (420)
51 PF06196 DUF997: Protein of un 42.6 1.6E+02 0.0034 23.3 7.3 26 348-373 8-33 (80)
52 PF10754 DUF2569: Protein of u 41.4 57 0.0012 28.7 5.2 11 400-410 74-84 (149)
53 PF15086 UPF0542: Uncharacteri 41.3 49 0.0011 25.6 4.0 29 377-405 17-45 (74)
54 PF14654 Epiglycanin_C: Mucin, 41.3 41 0.00089 27.6 3.8 29 378-406 16-44 (106)
55 PF04971 Lysis_S: Lysis protei 41.1 37 0.00081 26.0 3.3 53 351-408 7-59 (68)
56 PF09990 DUF2231: Predicted me 40.5 77 0.0017 25.8 5.6 24 348-371 7-30 (104)
57 PF11177 DUF2964: Protein of u 40.5 73 0.0016 24.0 4.7 38 347-386 8-45 (62)
58 PRK13182 racA polar chromosome 40.4 1.4E+02 0.003 27.2 7.6 27 225-251 118-144 (175)
59 PF04011 LemA: LemA family; I 40.0 2.9E+02 0.0062 25.0 16.6 49 310-370 120-168 (186)
60 PF05591 DUF770: Protein of un 39.8 58 0.0013 29.2 5.0 39 223-261 110-151 (157)
61 PTZ00382 Variant-specific surf 39.5 6.9 0.00015 32.0 -0.9 11 398-408 85-95 (96)
62 PHA03231 glycoprotein BALF4; P 39.0 1.7E+02 0.0036 33.2 9.3 23 82-104 358-381 (829)
63 PF07086 DUF1352: Protein of u 38.4 1.1E+02 0.0024 28.2 6.6 36 332-368 87-122 (186)
64 TIGR03358 VI_chp_5 type VI sec 37.9 61 0.0013 29.1 4.8 39 223-261 111-152 (159)
65 PRK13021 secF preprotein trans 37.5 1.2E+02 0.0026 30.0 7.3 45 348-400 231-275 (297)
66 PF04129 Vps52: Vps52 / Sac2 f 37.3 2E+02 0.0043 30.7 9.4 67 297-370 31-97 (508)
67 PF05461 ApoL: Apolipoprotein 37.2 4.4E+02 0.0094 26.3 11.8 11 242-252 32-42 (313)
68 KOG1853 LIS1-interacting prote 37.2 4E+02 0.0086 25.9 15.0 74 184-257 44-123 (333)
69 PF01769 MgtE: Divalent cation 37.0 2.6E+02 0.0057 23.7 8.7 13 397-409 97-109 (135)
70 PF07889 DUF1664: Protein of u 36.1 2.5E+02 0.0054 24.2 8.1 62 190-251 52-115 (126)
71 COG5130 YIP3 Prenylated rab ac 36.1 1.4E+02 0.003 26.3 6.4 18 353-370 82-99 (169)
72 PRK14584 hmsS hemin storage sy 35.8 1.7E+02 0.0037 26.1 7.2 27 345-372 17-43 (153)
73 PF06609 TRI12: Fungal trichot 35.8 51 0.0011 35.9 4.7 51 333-389 156-206 (599)
74 TIGR01167 LPXTG_anchor LPXTG-m 35.8 59 0.0013 20.6 3.3 9 399-407 24-32 (34)
75 PF12263 DUF3611: Protein of u 35.7 1.2E+02 0.0026 27.9 6.4 47 344-393 23-70 (183)
76 COG5487 Small integral membran 35.1 1.3E+02 0.0028 21.7 5.0 18 352-369 4-21 (54)
77 TIGR03647 Na_symport_sm probab 35.0 2.2E+02 0.0047 22.4 6.9 15 376-390 38-52 (77)
78 COG0004 AmtB Ammonia permease 34.4 99 0.0021 32.0 6.2 51 359-409 205-255 (409)
79 PRK10881 putative hydrogenase 34.2 1.7E+02 0.0037 30.0 8.1 53 351-409 27-85 (394)
80 COG5570 Uncharacterized small 34.1 1.2E+02 0.0026 22.0 4.7 46 194-244 7-52 (57)
81 PF06160 EzrA: Septation ring 33.6 6.4E+02 0.014 27.2 13.5 59 199-257 75-133 (560)
82 PF01031 Dynamin_M: Dynamin ce 32.6 1.8E+02 0.0039 28.3 7.7 79 175-255 186-269 (295)
83 PF09753 Use1: Membrane fusion 32.3 3.9E+02 0.0084 25.5 9.8 13 393-405 237-249 (251)
84 PF04995 CcmD: Heme exporter p 32.0 72 0.0016 22.2 3.4 12 398-409 21-32 (46)
85 PF06195 DUF996: Protein of un 31.9 3.5E+02 0.0075 23.6 8.7 22 339-362 28-49 (139)
86 PF11970 Git3_C: G protein-cou 31.8 1.4E+02 0.003 23.3 5.4 66 341-409 9-74 (76)
87 CHL00159 rpl13 ribosomal prote 31.4 40 0.00086 29.8 2.5 55 22-87 8-63 (143)
88 PF05568 ASFV_J13L: African sw 31.3 59 0.0013 28.7 3.4 29 379-408 29-57 (189)
89 TIGR03141 cytochro_ccmD heme e 30.9 64 0.0014 22.4 3.0 9 400-408 24-32 (45)
90 PF11669 WBP-1: WW domain-bind 30.9 50 0.0011 27.3 2.9 10 380-389 22-31 (102)
91 PRK13682 hypothetical protein; 30.5 47 0.001 24.0 2.2 18 352-369 4-21 (51)
92 PF05597 Phasin: Poly(hydroxya 30.4 3.6E+02 0.0079 23.4 8.8 21 231-251 108-128 (132)
93 PF01618 MotA_ExbB: MotA/TolQ/ 30.3 3.5E+02 0.0075 23.2 8.3 8 362-369 78-85 (139)
94 KOG0994 Extracellular matrix g 30.2 5.2E+02 0.011 30.7 11.2 27 225-251 1225-1251(1758)
95 PF08113 CoxIIa: Cytochrome c 29.9 1.5E+02 0.0033 19.4 4.3 27 378-404 4-30 (34)
96 PF11026 DUF2721: Protein of u 29.8 3.6E+02 0.0077 23.1 10.9 70 301-370 14-93 (130)
97 PF05377 FlaC_arch: Flagella a 29.8 1.1E+02 0.0024 22.5 4.1 29 234-262 16-44 (55)
98 PRK09216 rplM 50S ribosomal pr 29.5 39 0.00084 29.8 2.1 55 23-88 8-63 (144)
99 KOG4643 Uncharacterized coiled 29.2 9.8E+02 0.021 28.0 13.4 63 195-263 173-235 (1195)
100 PF08196 UL2: UL2 protein; In 29.2 83 0.0018 22.7 3.3 34 372-406 23-56 (60)
101 PF06570 DUF1129: Protein of u 29.0 2.4E+02 0.0052 26.0 7.5 19 349-367 83-101 (206)
102 PRK13022 secF preprotein trans 28.6 2.1E+02 0.0045 28.1 7.3 45 348-400 232-276 (289)
103 PRK08456 flagellar motor prote 28.5 1.3E+02 0.0027 29.1 5.7 42 349-393 4-47 (257)
104 PF10176 DUF2370: Protein of u 28.4 81 0.0018 30.1 4.2 33 377-409 189-221 (233)
105 PF08317 Spc7: Spc7 kinetochor 27.8 6.1E+02 0.013 25.2 15.4 15 45-59 15-29 (325)
106 PF04982 HPP: HPP family; Int 27.7 2.3E+02 0.005 24.0 6.5 23 352-374 50-72 (120)
107 TIGR01066 rplM_bact ribosomal 27.2 48 0.001 29.1 2.3 57 25-94 8-65 (140)
108 PF04226 Transgly_assoc: Trans 27.2 1.3E+02 0.0028 21.2 4.1 11 358-368 10-20 (48)
109 COG3402 Uncharacterized conser 27.1 2.4E+02 0.0052 25.3 6.6 19 352-370 24-42 (161)
110 PRK10189 MATE family multidrug 27.1 1.8E+02 0.0039 30.5 7.0 31 381-411 436-466 (478)
111 COG3516 Predicted component of 26.8 1.2E+02 0.0026 27.4 4.6 39 223-261 116-157 (169)
112 PF06417 DUF1077: Protein of u 26.6 1.5E+02 0.0033 25.4 5.2 65 348-412 43-111 (124)
113 PRK06926 flagellar motor prote 26.4 64 0.0014 31.5 3.2 42 349-393 7-52 (271)
114 PF13829 DUF4191: Domain of un 26.3 1.9E+02 0.0042 27.4 6.3 13 380-392 52-64 (224)
115 PF10168 Nup88: Nuclear pore c 26.2 9.6E+02 0.021 26.9 14.8 73 181-258 540-612 (717)
116 TIGR01834 PHA_synth_III_E poly 26.1 3.9E+02 0.0085 26.8 8.7 28 225-252 289-316 (320)
117 PF10112 Halogen_Hydrol: 5-bro 26.1 1.2E+02 0.0026 27.8 4.9 20 350-369 11-30 (199)
118 PF12018 DUF3508: Domain of un 26.0 6.2E+02 0.013 24.6 11.4 24 186-209 3-26 (281)
119 PRK14726 bifunctional preprote 25.8 3.7E+02 0.008 30.8 9.4 45 348-400 777-821 (855)
120 PF11857 DUF3377: Domain of un 25.7 42 0.00092 26.1 1.4 21 388-408 38-58 (74)
121 PF10577 UPF0560: Uncharacteri 25.7 69 0.0015 35.8 3.6 57 349-409 245-302 (807)
122 PF15290 Syntaphilin: Golgi-lo 25.6 6.6E+02 0.014 24.8 11.9 25 304-328 148-172 (305)
123 PF06238 Borrelia_lipo_2: Borr 25.4 1.7E+02 0.0038 24.2 4.9 39 307-345 61-100 (111)
124 PF08372 PRT_C: Plant phosphor 25.2 2.9E+02 0.0062 24.7 6.9 63 308-370 62-127 (156)
125 PF11677 DUF3273: Protein of u 24.8 3E+02 0.0066 26.8 7.3 36 340-375 21-60 (265)
126 PF10003 DUF2244: Integral mem 24.6 2.3E+02 0.0049 24.6 6.1 28 381-408 34-61 (140)
127 PF04504 DUF573: Protein of un 24.3 1.5E+02 0.0033 24.2 4.6 57 182-238 12-69 (98)
128 PF00335 Tetraspannin: Tetrasp 24.2 25 0.00055 31.4 0.0 19 349-367 9-27 (221)
129 PRK14756 hypothetical protein; 24.2 74 0.0016 20.0 2.0 18 346-363 4-21 (29)
130 PRK05771 V-type ATP synthase s 24.1 2.4E+02 0.0052 30.9 7.5 29 341-371 391-419 (646)
131 PF02439 Adeno_E3_CR2: Adenovi 23.9 1.7E+02 0.0036 19.9 3.8 18 391-408 14-32 (38)
132 PLN00205 ribisomal protein L13 23.7 62 0.0013 29.9 2.4 59 24-95 11-70 (191)
133 COG4244 Predicted membrane pro 23.5 2E+02 0.0044 25.9 5.5 24 348-371 53-76 (160)
134 KOG3684 Ca2+-activated K+ chan 23.4 9E+02 0.019 25.6 13.6 41 221-261 385-425 (489)
135 COG0534 NorM Na+-driven multid 23.0 2.2E+02 0.0047 29.7 6.7 50 349-410 395-446 (455)
136 PF10160 Tmemb_40: Predicted m 22.9 4.6E+02 0.0099 25.5 8.2 50 338-390 110-167 (261)
137 PF06103 DUF948: Bacterial pro 22.8 3.8E+02 0.0082 21.0 8.2 11 202-212 36-46 (90)
138 TIGR00807 malonate_madL malona 22.7 2.1E+02 0.0046 24.4 5.2 53 349-412 6-58 (125)
139 PF14235 DUF4337: Domain of un 22.6 5.5E+02 0.012 22.8 11.3 36 297-332 69-104 (157)
140 COG1283 NptA Na+/phosphate sym 22.6 9.9E+02 0.022 25.8 12.6 18 222-239 363-380 (533)
141 PF02388 FemAB: FemAB family; 22.4 4.4E+02 0.0094 27.1 8.7 56 193-250 243-298 (406)
142 PF14584 DUF4446: Protein of u 22.3 5.5E+02 0.012 22.7 8.1 35 298-332 43-77 (151)
143 PF03188 Cytochrom_B561: Eukar 22.2 3.4E+02 0.0075 22.7 6.8 42 347-388 39-80 (137)
144 PF10224 DUF2205: Predicted co 22.1 3.1E+02 0.0068 21.7 5.7 43 222-265 20-62 (80)
145 PRK10369 heme lyase subunit Nr 21.7 1.9E+02 0.0042 31.4 6.0 23 349-371 273-295 (571)
146 COG1459 PulF Type II secretory 21.6 9E+02 0.02 24.9 14.7 26 349-374 176-201 (397)
147 PF05010 TACC: Transforming ac 21.6 6.7E+02 0.015 23.5 14.9 38 223-260 81-118 (207)
148 PF02392 Ycf4: Ycf4; InterPro 21.5 3E+02 0.0065 25.3 6.3 25 348-373 24-48 (180)
149 PF07787 DUF1625: Protein of u 21.4 2.9E+02 0.0064 26.3 6.7 9 380-388 221-229 (248)
150 PF14257 DUF4349: Domain of un 21.4 3.5E+02 0.0076 25.8 7.3 53 197-252 137-189 (262)
151 PRK02870 heat shock protein Ht 21.4 3.5E+02 0.0076 27.3 7.5 28 339-367 19-47 (336)
152 PRK09110 flagellar motor prote 21.4 1.2E+02 0.0025 29.9 4.0 41 349-392 2-44 (283)
153 PF08173 YbgT_YccB: Membrane b 21.3 1.8E+02 0.004 18.3 3.4 15 382-396 4-18 (28)
154 PF07439 DUF1515: Protein of u 21.3 5E+02 0.011 21.8 7.8 58 193-251 9-66 (112)
155 KOG1277 Endosomal membrane pro 21.2 2.2E+02 0.0048 30.1 6.0 26 348-373 402-427 (593)
156 COG2205 KdpD Osmosensitive K+ 21.2 5.1E+02 0.011 29.5 9.1 24 177-200 618-641 (890)
157 PF01299 Lamp: Lysosome-associ 21.0 60 0.0013 32.1 1.9 20 23-42 104-123 (306)
158 KOG4343 bZIP transcription fac 20.9 2.4E+02 0.0052 30.3 6.2 73 297-375 305-383 (655)
159 PRK15122 magnesium-transportin 20.9 2.5E+02 0.0053 32.3 7.0 9 402-410 894-903 (903)
160 TIGR00353 nrfE c-type cytochro 20.7 2E+02 0.0043 31.3 5.9 22 349-370 219-240 (576)
161 PRK14762 membrane protein; Pro 20.7 1E+02 0.0022 18.9 2.0 20 349-368 5-25 (27)
162 PF12670 DUF3792: Protein of u 20.7 96 0.0021 26.0 2.8 42 366-410 27-68 (116)
163 PF00746 Gram_pos_anchor: Gram 20.5 33 0.00073 22.7 0.0 10 398-407 30-39 (39)
164 PF01957 NfeD: NfeD-like C-ter 20.4 36 0.00078 29.0 0.2 19 355-373 24-42 (144)
165 PF10191 COG7: Golgi complex c 20.2 6.5E+02 0.014 28.4 10.0 32 221-252 66-97 (766)
166 PF01763 Herpes_UL6: Herpesvir 20.1 8.9E+02 0.019 26.3 10.4 15 82-96 256-270 (557)
167 PF08227 DASH_Hsk3: DASH compl 20.1 3.2E+02 0.007 19.2 5.8 35 308-344 2-36 (45)
168 KOG2861 Uncharacterized conser 20.0 6.4E+02 0.014 26.1 9.0 29 308-336 333-361 (399)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-78 Score=589.87 Aligned_cols=351 Identities=50% Similarity=0.727 Sum_probs=308.7
Q ss_pred CCCCCCCCCCceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhhhhcCCCCCCceEeeeCCeEEEecccceeeeecCee
Q 015133 17 ATPRPRKGMGLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLRVLDPLLSYPSSILGRERAIVINLEHIKAIVTAKEV 96 (412)
Q Consensus 17 ~~~~~~~~~~~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr~Ld~~~s~~~~I~~R~~~Ilvnle~ir~II~~d~v 96 (412)
....+++++++++|++||..|+.+..+++|++|+++.||+|||||++||++++|++|+.|++|||+||||||||||+|+|
T Consensus 54 ~~~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeV 133 (414)
T KOG2662|consen 54 SSVSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEV 133 (414)
T ss_pred cccccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeehhhe
Confidence 35677778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcchhHHHHHHHHHhhhcccccccccccchhhhhhhhhhhccCCCCccccchhcccccCcCCCCCCCccccCCC
Q 015133 97 LMLYSTNPLVVQFVQDLQHRISSLQALSTQQAGERDEMEREDKAEANLSGPSQHTLRRRASISSNERKDDAPETSVVAGP 176 (412)
Q Consensus 97 llf~~~~~~~~~f~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (412)
++||+.++ +.++.+++++|+...+.+... +.+.. ....
T Consensus 134 ll~d~~~~-v~~~~~el~~~l~~~~~~~~~-------------------------------------q~s~~----~~~~ 171 (414)
T KOG2662|consen 134 LLLDSLDP-VIPYNEELQRRLPVELESRGN-------------------------------------QLSSD----GGSK 171 (414)
T ss_pred eEeccccc-cchHHHHHHHHhccccccccc-------------------------------------ccCCC----CCCC
Confidence 99999988 889999999999876532100 00000 0114
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Q 015133 177 KVLAFEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHLLDDDN 256 (412)
Q Consensus 177 ~~lpFEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~~d~ 256 (412)
+.+||||||||++++.+|..|++++..+|..++++||+|+.++++.+|++|+.+|++|+.|.++++.+||+|++||+||+
T Consensus 172 ~~lPFEFrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~ 251 (414)
T KOG2662|consen 172 DELPFEFRALEVALEAACSFLDSRLSELETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDD 251 (414)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcccccC----CCcc----ccc-cccCCCCcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Q 015133 257 DMAEMYLTEKLNASKEEV----SDED----DDR-SENNSQNFTSFKPNVEELEMLLEAYFAQIDGILQKLSDMSEYVDDT 327 (412)
Q Consensus 257 dm~~m~Lt~~~~~~~~~~----~~~~----~~~-~~~~~~~~~~~~~~~eEvE~LLE~Y~~~~d~~~~~l~~l~e~i~~t 327 (412)
||++||||+|+.+...+. ++.. .+. +..... .-...+++||+|||||+||+|+|++.+++++++++|++|
T Consensus 252 Dma~mYLT~K~~~~~~~~~~~~sp~~~~~~~r~~~~~~~s-~~~~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddT 330 (414)
T KOG2662|consen 252 DMAEMYLTRKLAQASSPESAPTSPTIKAGISRAKSNRASS-TVRGEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDT 330 (414)
T ss_pred HHHHHHHhHHhhhccccccCCCCccccCCccchhhcccch-hccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 999999999964331110 0000 000 000000 111268999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015133 328 EDCINIMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKK 407 (412)
Q Consensus 328 ee~i~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk 407 (412)
||++|++||++||++|+++++||+.|++++++++|||+||||+++.+| +.+|+|+||+++++++|+++|+..+.|+|+|
T Consensus 331 Ed~InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~~l~-~~~~~F~~vv~~~~~~~~~lf~~i~~~~k~k 409 (414)
T KOG2662|consen 331 EDIINIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLPSSLE-EDHYAFKWVVGITFTLCIVLFVVILGYAKLK 409 (414)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhc-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999997 5779999999999999999999999999999
Q ss_pred CCCC
Q 015133 408 IMLS 411 (412)
Q Consensus 408 ~wl~ 411 (412)
|+++
T Consensus 410 rL~~ 413 (414)
T KOG2662|consen 410 RLLG 413 (414)
T ss_pred hhcC
Confidence 9875
No 2
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-35 Score=291.37 Aligned_cols=275 Identities=17% Similarity=0.260 Sum_probs=222.5
Q ss_pred eEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCCeEE--E------------ecccceeeee
Q 015133 28 RTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRERAIV--I------------NLEHIKAIVT 92 (412)
Q Consensus 28 ~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~~Il--v------------nle~ir~II~ 92 (412)
.-|+.++.-...+. ..|.+.+|||+..+. ++|. +++|++...++++. + .++++..+++
T Consensus 33 ~~Widl~~p~~~e~-----~~l~~~~~l~~~~~ed~~~~--~~r~r~e~~d~~~~i~~~~~~~~~~~~~~~~~~v~~i~~ 105 (322)
T COG0598 33 FVWIDLVEPDDEEL-----EWLAKTFGLHPLALEDLLDA--EQRPKVERYDDYLFIVLRDVNLEEEEDKAETEPVSIIVG 105 (322)
T ss_pred eEEEECCCCCHHHH-----HHHHHhcCCCcchHHHHhCc--ccCCceEeeCCEEEEEEEeeccccccccccceeEEEEEe
Confidence 56998887666444 367789999999999 8999 99999999998733 2 2667889999
Q ss_pred cCeeEEecCCCcchhHHHHHHHHHhhhcccccccccccchhhhhhhhhhhccCCCCccccchhcccccCcCCCCCCCccc
Q 015133 93 AKEVLMLYSTNPLVVQFVQDLQHRISSLQALSTQQAGERDEMEREDKAEANLSGPSQHTLRRRASISSNERKDDAPETSV 172 (412)
Q Consensus 93 ~d~vllf~~~~~~~~~f~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (412)
.+.+++++.... +.+..++.|+......
T Consensus 106 ~~~liT~r~~~~---~~~~~vr~r~~~~~~~------------------------------------------------- 133 (322)
T COG0598 106 KRRLITIRHRPL---PAFDRVRERLEKGTLL------------------------------------------------- 133 (322)
T ss_pred CCEEEEEecCCC---ccHHHHHHHHhccccc-------------------------------------------------
Confidence 999999997432 5667788887653110
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 015133 173 VAGPKVLAFEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHLL 252 (412)
Q Consensus 173 ~~~~~~lpFEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll 252 (412)
..++..+- +.+++.+.+.+...++ .+++.++.+.+.+..+.++..+++|..+++.+..+++.+.++++++..+.
T Consensus 134 ~~~~~~l~--~~lld~i~d~~~~~le----~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~ 207 (322)
T COG0598 134 TRGADELL--YALLDAIVDNYFPVLE----QIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLA 207 (322)
T ss_pred cCCHHHHH--HHHHHHHHHhhHHHHH----HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11223333 4777777777777666 68888888898888877778999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHhhhcccccCCCccccccccCCCCcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Q 015133 253 DDDNDMAEMYLTEKLNASKEEVSDEDDDRSENNSQNFTSFKPNVEELEMLLEAYFAQIDGILQKLSDMSEYVDDTEDCIN 332 (412)
Q Consensus 253 ~~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eEvE~LLE~Y~~~~d~~~~~l~~l~e~i~~tee~i~ 332 (412)
+...+. ..+|....++.-..++..+.+.++.+++.++.+.+.+.
T Consensus 208 ~~~~~~------------------------------------~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~ 251 (322)
T COG0598 208 RRPLDW------------------------------------LSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYL 251 (322)
T ss_pred hcCccc------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765431 11233334455556688888899999999999999999
Q ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015133 333 IMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKKIML 410 (412)
Q Consensus 333 ~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl 410 (412)
..+++++|++|| +||++|++|+|+|+|||+|||||++|||++|+||||+++++|+ ++++++++||||||||
T Consensus 252 s~is~~~N~imk---~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~----~~~~~~~~~frrk~Wl 322 (322)
T COG0598 252 SLINNNQNEIMK---ILTIVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILML----LLALLLYLYFRRKGWL 322 (322)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHH----HHHHHHHHHHHhcCcC
Confidence 999999999999 6999999999999999999999999999999999999998875 4447789999999997
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=100.00 E-value=1.8e-33 Score=278.77 Aligned_cols=280 Identities=14% Similarity=0.218 Sum_probs=210.6
Q ss_pred CCceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCCeEE-------------Eecccceee
Q 015133 25 MGLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRERAIV-------------INLEHIKAI 90 (412)
Q Consensus 25 ~~~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~~Il-------------vnle~ir~I 90 (412)
.+...|+.+.+-.+.+. ...+++.||+|+.++. .+|+ .++|++...+++.+ +..+++..+
T Consensus 24 ~~~~~Widl~~p~~~e~----~~~l~~~~~l~~~~~ed~~~~--~~~~k~e~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 97 (318)
T TIGR00383 24 LNTVLWIDLIEPTDEET----LAKLGQFFAIHPLALEDILNS--PQRPKVEEDEDHLFIISFFLNEDEDDTFETEQVSFI 97 (318)
T ss_pred CCceEEEEccCCCcHHH----HHHHHHHcCcCcchHHHhhCC--CCCCcEEEECCEEEEEEEeeeccCCCcceeEEEEEE
Confidence 35667888665444331 2478899999999999 8888 77888888887755 234668899
Q ss_pred eecCeeEEecCCCcchhHHHHHHHHHhhhcccccccccccchhhhhhhhhhhccCCCCccccchhcccccCcCCCCCCCc
Q 015133 91 VTAKEVLMLYSTNPLVVQFVQDLQHRISSLQALSTQQAGERDEMEREDKAEANLSGPSQHTLRRRASISSNERKDDAPET 170 (412)
Q Consensus 91 I~~d~vllf~~~~~~~~~f~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (412)
++.+.++++..... +.++.+++++...... .
T Consensus 98 l~~~~liTv~~~~~---~~~~~~~~~~~~~~~~------------------------~---------------------- 128 (318)
T TIGR00383 98 LGKNLLFTIHEREL---PAFDSIRERIRTSQKV------------------------F---------------------- 128 (318)
T ss_pred EECCEEEEEEcCCC---CcHHHHHHHHHhCchh------------------------h----------------------
Confidence 99999999986642 4566666666443100 0
Q ss_pred cccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 015133 171 SVVAGPKVLAFEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEH 250 (412)
Q Consensus 171 ~~~~~~~~lpFEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~ 250 (412)
..++.. +-+++|+.+++. +...++.+++.++.+.+.+.+...+..+.++..+|+++..+++.+.+.+++++.
T Consensus 129 --~~~~~~--ll~~il~~ivd~----~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~ 200 (318)
T TIGR00383 129 --EKGADY--LLYDIFDAIIDS----YFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNF 200 (318)
T ss_pred --hCCHHH--HHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111 223555555544 444555788888888888777666778999999999999999999999999999
Q ss_pred HhcCCc-hhHHHHHHHhhhcccccCCCccccccccCCCCcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 015133 251 LLDDDN-DMAEMYLTEKLNASKEEVSDEDDDRSENNSQNFTSFKPNVEELEMLLEAYFAQIDGILQKLSDMSEYVDDTED 329 (412)
Q Consensus 251 Ll~~d~-dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eEvE~LLE~Y~~~~d~~~~~l~~l~e~i~~tee 329 (412)
+.+.+. .. ..++....++.-..+++.+.+.++.+++.++.+.+
T Consensus 201 l~~~~~~~~------------------------------------~~~~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d 244 (318)
T TIGR00383 201 LLRKTHLPI------------------------------------QTEEVREYLRDIYDHILSLLEMIETYRELLSSLMD 244 (318)
T ss_pred HHcCCCccc------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 976432 10 01122222333334577888888999999999999
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015133 330 CINIMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKKIM 409 (412)
Q Consensus 330 ~i~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~w 409 (412)
.+....++++|++|| +||++|++|+|+|+|||+|||||++|||.+|+||||+++++|++++ +++++|||||||
T Consensus 245 ~~~~~~s~~~N~~mk---~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~----~~~~~~fkrk~W 317 (318)
T TIGR00383 245 LYLSLVNNKMNEIMK---ILTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIA----LGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHH----HHHHHHHHHcCC
Confidence 999999999999999 6999999999999999999999999999999999999998875444 678999999999
Q ss_pred C
Q 015133 410 L 410 (412)
Q Consensus 410 l 410 (412)
|
T Consensus 318 l 318 (318)
T TIGR00383 318 L 318 (318)
T ss_pred C
Confidence 7
No 4
>PRK09546 zntB zinc transporter; Reviewed
Probab=100.00 E-value=5.2e-33 Score=276.37 Aligned_cols=274 Identities=13% Similarity=0.131 Sum_probs=194.8
Q ss_pred CceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hh-cCCCCCCceEeeeCCeEEEe--------------ccccee
Q 015133 26 GLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VL-DPLLSYPSSILGRERAIVIN--------------LEHIKA 89 (412)
Q Consensus 26 ~~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~L-d~~~s~~~~I~~R~~~Ilvn--------------le~ir~ 89 (412)
....|+.++.....+ +..|.+ ++.++..++ .+ |. .++|++...++.+++. +.++..
T Consensus 35 ~~~~Wi~l~~~~~~e-----~~~L~~-~~~~~~~~~d~l~~~--~~rpk~e~~~~~~~iil~~~~~~~~~~~~~~~~l~~ 106 (324)
T PRK09546 35 AHPCWLHLDYTHPDS-----AQWLAT-TPLLPDNVRDALAGE--STRPRVSRLGEGTLITLRCINGNTDERPDQLVAMRV 106 (324)
T ss_pred CCCEEEEeCCCChhH-----HHHHHh-cCCCCHHHHHHHhCC--CCCCcEEEECCEEEEEEEeccCCCCCChhheEEEEE
Confidence 345699986532221 224444 466676666 44 44 6788999999886633 233789
Q ss_pred eeecCeeEEecCCCcchhHHHHHHHHHhhhcccccccccccchhhhhhhhhhhccCCCCccccchhcccccCcCCCCCCC
Q 015133 90 IVTAKEVLMLYSTNPLVVQFVQDLQHRISSLQALSTQQAGERDEMEREDKAEANLSGPSQHTLRRRASISSNERKDDAPE 169 (412)
Q Consensus 90 II~~d~vllf~~~~~~~~~f~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (412)
++++|.++++..... ++++.+++++....++
T Consensus 107 ~l~~~~lITv~~~~~---~~~~~~~~~~~~~~~~---------------------------------------------- 137 (324)
T PRK09546 107 YITDRLIVSTRHRKV---LALDDVVSDLQEGTGP---------------------------------------------- 137 (324)
T ss_pred EEeCCEEEEEecCCc---ccHHHHHHHHHhCCCC----------------------------------------------
Confidence 999999999985543 5677787777543210
Q ss_pred ccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 015133 170 TSVVAGPKVLAFEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIE 249 (412)
Q Consensus 170 ~~~~~~~~~lpFEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~ 249 (412)
..+. -+-+.+|+.+++.+.. .++.+++.++.+++.+.+...+ ..++|..+|+++.++++.+.+.++++.
T Consensus 138 ----~~~~--~ll~~lld~ivd~~~~----~l~~i~~~ld~lE~~l~~~~~~-~~~~l~~lrr~l~~lrr~l~p~~~~l~ 206 (324)
T PRK09546 138 ----TDCG--GWLVDVCDALTDHASE----FIEELHDKIIDLEDNLLDQQIP-PRGELALLRKQLIVMRRYMAPQRDVFA 206 (324)
T ss_pred ----CCHH--HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 1334556666555555 4446888877777777543222 357999999999999999999999999
Q ss_pred HHhcCCchhHHHHHHHhhhcccccCCCccccccccCCCCcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 015133 250 HLLDDDNDMAEMYLTEKLNASKEEVSDEDDDRSENNSQNFTSFKPNVEELEMLLEAYFAQIDGILQKLSDMSEYVDDTED 329 (412)
Q Consensus 250 ~Ll~~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eEvE~LLE~Y~~~~d~~~~~l~~l~e~i~~tee 329 (412)
+|.+.+... ++ ++....++....++..+.+.++.+++.++.+.+
T Consensus 207 ~L~~~~~~~----~~--------------------------------~~~~~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d 250 (324)
T PRK09546 207 RLASERLPW----MS--------------------------------DDDRRRMQDIADRLGRGLDDLDACIARTAVLAD 250 (324)
T ss_pred HHHhcCCcc----cC--------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998643210 00 111111222223355566677788888888989
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015133 330 CINIMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKKIM 409 (412)
Q Consensus 330 ~i~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~w 409 (412)
.+...+++++|++|| +||++|++|+|+|||||+|||||++|||.+|+||||+++++|+ ++++++++|||||||
T Consensus 251 ~~~s~~s~~~N~~m~---~Ltilt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~----~i~~~~~~~fkrk~W 323 (324)
T PRK09546 251 EIASVMAEAMNRRTY---TMSLMAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLV----VLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHH----HHHHHHHHHHHhccc
Confidence 999999999999999 6999999999999999999999999999999999999988764 444678899999999
Q ss_pred C
Q 015133 410 L 410 (412)
Q Consensus 410 l 410 (412)
|
T Consensus 324 l 324 (324)
T PRK09546 324 L 324 (324)
T ss_pred C
Confidence 7
No 5
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=99.97 E-value=2.5e-29 Score=247.69 Aligned_cols=276 Identities=12% Similarity=0.123 Sum_probs=195.4
Q ss_pred ceEEEEEcCCCCeeEEEehhhhhHHhcCCC---chhhhhhcCCCCCCceEeeeCCeEEEe-------------cccceee
Q 015133 27 LRTWLVVSESGQSRVEEVGKHVIMRRTGLP---ARDLRVLDPLLSYPSSILGRERAIVIN-------------LEHIKAI 90 (412)
Q Consensus 27 ~~~w~~id~~g~~~~~~~~k~~l~~~~gL~---~RDLr~Ld~~~s~~~~I~~R~~~Ilvn-------------le~ir~I 90 (412)
..-|+.+..-... ....+.+.+|++ ..|+.-+.. +|++..+++++.++ .+++..|
T Consensus 25 ~~vWiDl~~Pt~e-----E~~~v~~~~gl~~pt~~~~eeIe~----ssR~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fi 95 (316)
T PRK11085 25 DAVWIDLVEPDDD-----ERLRVQSELGQSLATRPELEDIEA----SARFFEDEDGLHIHSFFFFEDAEDHAGNSTVAFT 95 (316)
T ss_pred CCEEEEcCCCCHH-----HHHHHHHHhCCCCCChhhHHHHhh----CceEEEECCeEEEEEEEEecCCCCCccceeEEEE
Confidence 4668876443222 234678899999 777774443 26677777765533 3457899
Q ss_pred eecCeeEEecCCCcchhHHHHHHHHHhhhcccccccccccchhhhhhhhhhhccCCCCccccchhcccccCcCCCCCCCc
Q 015133 91 VTAKEVLMLYSTNPLVVQFVQDLQHRISSLQALSTQQAGERDEMEREDKAEANLSGPSQHTLRRRASISSNERKDDAPET 170 (412)
Q Consensus 91 I~~d~vllf~~~~~~~~~f~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (412)
++.+.++++...++ +.+..+++|+..+...
T Consensus 96 l~~~~LvTvr~~~~---~~f~~~~~r~~~~~~~----------------------------------------------- 125 (316)
T PRK11085 96 IRDGRLFTLREREL---PAFRLYRMRARSQTLV----------------------------------------------- 125 (316)
T ss_pred EECCEEEEEecCCc---chHHHHHHHHHhCCcc-----------------------------------------------
Confidence 99999999987765 5567788887543100
Q ss_pred cccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 015133 171 SVVAGPKVLAFEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEH 250 (412)
Q Consensus 171 ~~~~~~~~lpFEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~ 250 (412)
.. +..-.-+.+||++++.+++.+|....+++.....++..-..+.-.+.++++.++++.+..++..+.++++++..
T Consensus 126 --~~--~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~~~~~~~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~ 201 (316)
T PRK11085 126 --DG--NAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNF 201 (316)
T ss_pred --cC--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 11223357799999998888887666666655555432100011234455556666666666666666666665
Q ss_pred HhcCCchhHHHHHHHhhhcccccCCCccccccccCCCCcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 015133 251 LLDDDNDMAEMYLTEKLNASKEEVSDEDDDRSENNSQNFTSFKPNVEELEMLLEAYFAQIDGILQKLSDMSEYVDDTEDC 330 (412)
Q Consensus 251 Ll~~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eEvE~LLE~Y~~~~d~~~~~l~~l~e~i~~tee~ 330 (412)
+.+... ...+..+. +..|++|++.+...++.+.+.+..+.|.
T Consensus 202 l~~~~~-------------------------------------~~~~~~~~-~~~~~~Di~~l~~~~~~~~~~~~~l~d~ 243 (316)
T PRK11085 202 LVRKAR-------------------------------------LPGGQLEQ-AREILRDIESLLPHNESLFQKVNFLMQA 243 (316)
T ss_pred Hhhccc-------------------------------------CChhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 553100 00111122 3578999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015133 331 INIMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKKIML 410 (412)
Q Consensus 331 i~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl 410 (412)
+...+++++|++|| +||++|++|+|+|+|||+|||||++|||.+|+||||+++++|++++ +++++||||||||
T Consensus 244 ~~~~i~~~~N~~mk---~lTv~s~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~~~~~~~----~~~~~~f~rk~Wl 316 (316)
T PRK11085 244 AMGFINIEQNRIIK---IFSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIILMILAG----LAPYLYFKRKNWL 316 (316)
T ss_pred HHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHHHHHHHH----HHHHHHHHHcccC
Confidence 99999999999999 5999999999999999999999999999999999999998875444 5678999999997
No 6
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=99.97 E-value=2.3e-28 Score=237.74 Aligned_cols=274 Identities=18% Similarity=0.242 Sum_probs=208.6
Q ss_pred ceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCCeEEEec--------------ccceeee
Q 015133 27 LRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRERAIVINL--------------EHIKAIV 91 (412)
Q Consensus 27 ~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~~Ilvnl--------------e~ir~II 91 (412)
...|+.+++..+.+. ..|.+.+|||+..++ .+++ ..+|++...++++++.+ .++..++
T Consensus 3 ~~~Wi~~~~~~~~~~-----~~l~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 75 (292)
T PF01544_consen 3 GFVWIDLSGPDDEEL-----EWLAEEFGLHPLTIEDALDP--EERPRIEVFDDYLFIVLRAPEYEEEDDIDEESPLSFIL 75 (292)
T ss_dssp S-EEEEEETTTCHHH-----HHHHHTTTS-HHHHHHHCCT--SSSSEEEEETTEEEEEEEEEEESTTCCECCEEEEEEEE
T ss_pred ccEEEEEeCCCHHHH-----HHHHHHhCcCHhHHHHHhCC--CcCCEEEEECCeEEEEEEEcchhhcccccccceEEEEE
Confidence 567999988777533 378899999999999 9998 88999999999966322 1468999
Q ss_pred ecCeeEEecCCCcchhHHHHHHHHHhhhcccccccccccchhhhhhhhhhhccCCCCccccchhcccccCcCCCCCCCcc
Q 015133 92 TAKEVLMLYSTNPLVVQFVQDLQHRISSLQALSTQQAGERDEMEREDKAEANLSGPSQHTLRRRASISSNERKDDAPETS 171 (412)
Q Consensus 92 ~~d~vllf~~~~~~~~~f~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (412)
+.+.+++++.... ++++.+.+++....
T Consensus 76 ~~~~lit~~~~~~---~~~~~~~~~~~~~~-------------------------------------------------- 102 (292)
T PF01544_consen 76 GDNFLITVHRDPL---PFIDELRERLESRN-------------------------------------------------- 102 (292)
T ss_dssp ETTEEEEEESSSS---HCHHHHHHHHHSTT--------------------------------------------------
T ss_pred ecceEEEEECCCC---hHHHHHHHHhhccC--------------------------------------------------
Confidence 9999999997753 66777878876110
Q ss_pred ccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015133 172 VVAGPKVLAFEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHL 251 (412)
Q Consensus 172 ~~~~~~~lpFEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~L 251 (412)
....-|+ .++..+++.+++.+...++.+++.+..+.+.+.+......+.++..+|+.+..+++.+.+.++++.++
T Consensus 103 ---~~~~~~~--~ll~~il~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~ 177 (292)
T PF01544_consen 103 ---ERPSSPE--DLLYAILDEIVDDYFEVLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRL 177 (292)
T ss_dssp ---CSCSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 0011232 55667777777777777778999988888888666777788999999999999999999999999888
Q ss_pred hc-CCchhHHHHHHHhhhcccccCCCccccccccCCCCcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 015133 252 LD-DDNDMAEMYLTEKLNASKEEVSDEDDDRSENNSQNFTSFKPNVEELEMLLEAYFAQIDGILQKLSDMSEYVDDTEDC 330 (412)
Q Consensus 252 l~-~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eEvE~LLE~Y~~~~d~~~~~l~~l~e~i~~tee~ 330 (412)
++ .... ...++....++.+..++..+.+.++.+++.++.+.+.
T Consensus 178 ~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 221 (292)
T PF01544_consen 178 LRRDDSP------------------------------------FISDEDKEYLRDLLDRIERLLERAESLRERLESLQDL 221 (292)
T ss_dssp HHCCCST------------------------------------TSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhh------------------------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 2111 0111223335667778889999999999999999999
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015133 331 INIMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKK 406 (412)
Q Consensus 331 i~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frr 406 (412)
+...++.++|++|| +||++|++|.|+|||||+|||||.++|+.+|+|||++++++ ++++++++++++||||
T Consensus 222 ~~~~~~~~~n~~m~---~LT~~t~iflPlt~i~g~fGMN~~~~p~~~~~~g~~~~~~~--~~~~~~~~~~~~~~kR 292 (292)
T PF01544_consen 222 YQSKLSNRQNRVMK---VLTIVTAIFLPLTFITGIFGMNFKGMPELDWPYGYFFVIIL--GLMILVAILLYWWFKR 292 (292)
T ss_dssp HHHHHTCHHHHHHH---HHHHHHHHHHHHHHHTTSTTS-SS---SSSSSS-SHHH--H--HHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhCCccCCCccCCccHHHHHHHH--HHHHHHHHHHHHheeC
Confidence 99999999999999 69999999999999999999999999999999988877432 2345666777888876
No 7
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=95.39 E-value=3.3 Score=41.33 Aligned_cols=184 Identities=11% Similarity=0.029 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCchhHH
Q 015133 181 FEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHLLDDDNDMAE 260 (412)
Q Consensus 181 FEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~~d~dm~~ 260 (412)
.-..+|-.+++.+++.+-..++.++..++.+...+..+..+..++++. +++.++++.+.++|+++..+.+-
T Consensus 128 ~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~~~~~~~~~~l---~~i~~l~~~~~~~r~~l~~~~r~------ 198 (316)
T PRK11085 128 NAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGHQGDEYDEAL---STLAELEDIGWKVRLCLMDTQRA------ 198 (316)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH------
Confidence 456788888999999999888888888877777665543333444444 67888899999988887655420
Q ss_pred HHHHHhhhcccccCCCccccccccCCCCcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHhHHHHH
Q 015133 261 MYLTEKLNASKEEVSDEDDDRSENNSQNFTSFKPNVEELEMLLEAYFAQIDGILQKLSDMSEYVDDTEDCINIMLDDTQN 340 (412)
Q Consensus 261 m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eEvE~LLE~Y~~~~d~~~~~l~~l~e~i~~tee~i~~~Ld~~rN 340 (412)
++ .. .. .. .+-.....++..+.+.++.+.++.+...+.++..+|...+
T Consensus 199 --l~-~l------------------------~~-~~----~~~~~~~~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~ 246 (316)
T PRK11085 199 --LN-FL------------------------VR-KA----RLPGGQLEQAREILRDIESLLPHNESLFQKVNFLMQAAMG 246 (316)
T ss_pred --HH-HH------------------------hh-cc----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 00 10 0111112457778888999999998888888877776554
Q ss_pred HH-HHhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015133 341 QL-LQMGVLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKKIM 409 (412)
Q Consensus 341 ~l-mk~~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~w 409 (412)
.+ .+.+-++-+.|++-++....+=+.|+ -.|-+..-|..-|. .+. .++++++.++.+..+.+-||
T Consensus 247 ~i~~~~N~~mk~lTv~s~if~pptliagi--yGMNf~~mP~~~~~-~g~-~~~l~~~~~~~~~~~~~f~r 312 (316)
T PRK11085 247 FINIEQNRIIKIFSVVSVVFLPPTLVASS--YGMNFEFMPELKWS-FGY-PGAIILMILAGLAPYLYFKR 312 (316)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhh--cccccCCCCCCCCc-HHH-HHHHHHHHHHHHHHHHHHHH
Confidence 43 34445999999999999999999997 23333334433322 221 12344555666666665444
No 8
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=93.88 E-value=6.8 Score=40.29 Aligned_cols=70 Identities=10% Similarity=0.129 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhhHHhHH-----HHHHHHh---HHHHHHHHHh-hHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCC
Q 015133 309 QIDGILQKLSDMSEYVDDTE-----DCINIML---DDTQNQLLQM-GVLLSAANMILNAGIVVVGLFGMNIHITLFDAPT 379 (412)
Q Consensus 309 ~~d~~~~~l~~l~e~i~~te-----e~i~~~L---d~~rN~lmk~-~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~ 379 (412)
+..++.+.+++++..|.-+| ..+.... ...|--+.++ ++.||++++++...+.++++ . .|...++
T Consensus 299 RaRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~n~~~r~~l~k~inllL~l~~vlLv~vSt~~~~-----~-~Pl~~tR 372 (395)
T PF10267_consen 299 RARDIWEVMESCQTRISKLEQQQQQQVVQLEGTENSRARALLGKLINLLLTLLTVLLVFVSTVANC-----P-LPLTRTR 372 (395)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----C-cHHhhcc
Confidence 35555556666666666555 2222211 2244444454 66888888887776666654 3 3445666
Q ss_pred chHHH
Q 015133 380 IKFWQ 384 (412)
Q Consensus 380 ~gF~~ 384 (412)
+-...
T Consensus 373 ~r~~~ 377 (395)
T PF10267_consen 373 LRTLT 377 (395)
T ss_pred HHHHH
Confidence 54333
No 9
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=90.51 E-value=2.9 Score=35.27 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=29.7
Q ss_pred HHHHHhhHHhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCC
Q 015133 317 LSDMSEYVDDTEDCINIMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNIH 371 (412)
Q Consensus 317 l~~l~e~i~~tee~i~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~ 371 (412)
.+++.+.+++--++....+..+..+..+ .+.+.++..+++..+++...++..+-
T Consensus 9 ~~~~~~lv~~~i~La~~E~~~~~~~~~~-~~~~~~~a~vl~~~~l~~l~~al~~~ 62 (121)
T PF07332_consen 9 VDDLSTLVRTRIELAKAELREKARRLGR-GLALLVLAAVLALLALLFLLVALVFA 62 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555566666666665554 23455556666666666555555553
No 10
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=90.25 E-value=2 Score=32.90 Aligned_cols=70 Identities=10% Similarity=-0.056 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015133 335 LDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKKIM 409 (412)
Q Consensus 335 Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~w 409 (412)
|.+.|+-+--+..-+++++++++...+.......+-. ....+.+...+.++++.++++.+.+.|++++||
T Consensus 4 lA~ERT~LaW~Rt~l~l~~~g~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ry~~~~~~ 73 (73)
T PF02656_consen 4 LANERTFLAWIRTALALVGVGLALLRFFSLDHPSSSA-----SRRVSKVLGLLLIVLGLLTLIYGIYRYRRRRRW 73 (73)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5677777755544555555554444332221111110 122233333333444555666677899999998
No 11
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=89.61 E-value=10 Score=36.29 Aligned_cols=64 Identities=11% Similarity=0.167 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh--cccCCCCCCC
Q 015133 305 AYFAQIDGILQKLSDMSEYVDDTEDCINIMLDDTQNQLLQMGVLLSAANMILNAGIVVVGL--FGMNIHITLF 375 (412)
Q Consensus 305 ~Y~~~~d~~~~~l~~l~e~i~~tee~i~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGi--fGMN~~~~pe 375 (412)
...+.++.+.+.++.+.+...+. ++..++..+.. +. ++|++-+-++..|-+.|+ .||.....+.
T Consensus 203 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~n~~m~~-LT---~~t~iflPlt~i~g~fGMN~~~~p~~~~~~ 268 (292)
T PF01544_consen 203 RLLERAESLRERLESLQDLYQSK---LSNRQNRVMKV-LT---IVTAIFLPLTFITGIFGMNFKGMPELDWPY 268 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HTCHHHHHHHH-HH---HHHHHHHHHHHHTTSTTS-SS---SSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HH---HHHHHHHHHHHHHHHhhCCccCCCccCCcc
Confidence 34445666666666665554443 45555555554 45 377777887777777776 5587655553
No 12
>PRK09546 zntB zinc transporter; Reviewed
Probab=83.97 E-value=47 Score=32.93 Aligned_cols=98 Identities=11% Similarity=-0.013 Sum_probs=49.9
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhHHhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCch
Q 015133 303 LEAYFAQI-DGILQKLSDMSEYVDDTEDCINIMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIK 381 (412)
Q Consensus 303 LE~Y~~~~-d~~~~~l~~l~e~i~~tee~i~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~g 381 (412)
...||+++ +++.+.++.+....+.+..+.+.+.+...|++.+ ++-+.|++-++..-.+=+-|. + .|-...-|..
T Consensus 220 ~~~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~~~N~---~m~~Ltilt~IflPlT~IaGi-y-GMNf~~mPel 294 (324)
T PRK09546 220 DRRRMQDIADRLGRGLDDLDACIARTAVLADEIASVMAEAMNR---RTYTMSLMAMVFLPTTFLTGL-F-GVNLGGIPGG 294 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh-h-ccccCCCCCc
Confidence 34566664 3344444444444444455555555666666555 666677666666655666665 1 2222223332
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015133 382 -FWQTTCGTIGGCLALYLIAVGWGKKKI 408 (412)
Q Consensus 382 -F~~v~~~~~~~~~~l~~~~~~~frrk~ 408 (412)
+.+... +++++++++.+..+..=|
T Consensus 295 ~~~~gy~---~~l~im~~i~~~~~~~fk 319 (324)
T PRK09546 295 GWPFGFS---IFCLLLVVLIGGVAWWLK 319 (324)
T ss_pred CCcchHH---HHHHHHHHHHHHHHHHHH
Confidence 222222 224566655666665444
No 13
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=82.18 E-value=56 Score=32.48 Aligned_cols=100 Identities=11% Similarity=0.062 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH----HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 015133 298 ELEMLLEAYFAQIDGILQKLSDMSEYVDDTED----CINIMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNIHIT 373 (412)
Q Consensus 298 EvE~LLE~Y~~~~d~~~~~l~~l~e~i~~tee----~i~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~~~ 373 (412)
....-...|++++ ..++.++.+.++...+ +.+..++...|+... ++-+.|.+-++..-.|=+.|- -.|
T Consensus 213 ~~~~~~~~~l~dv---~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~---imk~LTi~s~iflPpTlIagi--yGM 284 (322)
T COG0598 213 WLSEEDREYLRDV---LDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNE---IMKILTIVSTIFLPPTLITGF--YGM 284 (322)
T ss_pred cCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHcc--ccc
Confidence 3334445566654 4444444444444444 455555566666666 999999988888888888884 234
Q ss_pred CCCCCC-chHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015133 374 LFDAPT-IKFWQTTCGTIGGCLALYLIAVGWGKKKI 408 (412)
Q Consensus 374 pe~~~~-~gF~~v~~~~~~~~~~l~~~~~~~frrk~ 408 (412)
-+..-| ..+.+-.. .++++++++.++.+++-+
T Consensus 285 Nf~~mPel~~~~Gy~---~~l~~m~~~~~~~~~~fr 317 (322)
T COG0598 285 NFKGMPELDWPYGYP---IALILMLLLALLLYLYFR 317 (322)
T ss_pred CCCCCcCCCCcccHH---HHHHHHHHHHHHHHHHHH
Confidence 433334 33333222 235677777777666544
No 14
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=79.92 E-value=64 Score=31.68 Aligned_cols=59 Identities=12% Similarity=0.288 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHH----HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccc
Q 015133 304 EAYFAQIDGILQKLSDMSEYVDDTEDCIN----IMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGM 368 (412)
Q Consensus 304 E~Y~~~~d~~~~~l~~l~e~i~~tee~i~----~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGM 368 (412)
..|++++ .+++..+.+.++...+.++ ..++..-|+..+ .+-.+|++-++.+-.+=+-|.
T Consensus 215 ~~~~~dv---~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~---~mk~LTvvt~IflP~t~IaGi 277 (318)
T TIGR00383 215 REYLRDI---YDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNE---IMKILTVVSTIFIPLTFIAGI 277 (318)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4455554 4455555555555555444 444555555555 999999999999999988887
No 15
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=79.14 E-value=1.2e+02 Score=34.34 Aligned_cols=21 Identities=10% Similarity=-0.066 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhcccCCCCCCC
Q 015133 355 ILNAGIVVVGLFGMNIHITLF 375 (412)
Q Consensus 355 i~~~~t~IaGifGMN~~~~pe 375 (412)
++...+++.|++|-.=+..|-
T Consensus 429 ~~~~lGLl~G~~G~~~~~~p~ 449 (806)
T PF05478_consen 429 LCLLLGLLCGCCGYRRRADPT 449 (806)
T ss_pred HHHHHHHHHhhccCCCCCCCc
Confidence 445578899999977665553
No 16
>PF04163 Tht1: Tht1-like nuclear fusion protein ; InterPro: IPR007292 Nuclear fusion protein KAR5 is an integral membrane protein that is thought to be required for the fusion of nuclear envelopes during karyogamy.
Probab=76.64 E-value=1.2e+02 Score=32.83 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH-HHhHHHHHHHHHh-hHHHHHHHH
Q 015133 300 EMLLEAYFAQIDGILQKLSDMSEYVDDTEDCIN-IMLDDTQNQLLQM-GVLLSAANM 354 (412)
Q Consensus 300 E~LLE~Y~~~~d~~~~~l~~l~e~i~~tee~i~-~~Ld~~rN~lmk~-~l~LTi~s~ 354 (412)
+.+++.+......+....+.....+.++.+.+. -.|+..+=.+.-+ ++.++-+..
T Consensus 392 ~~ll~~~~~~~s~l~~~f~~w~~~i~~tf~~i~~~~l~~t~~ki~~~~~~~~~~~~~ 448 (544)
T PF04163_consen 392 NQLLQEWTMMTSNLNSDFALWNREIFSTFESISMKKLNITKDKIDDLGSLSISFIHI 448 (544)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666777777777777776666 5566555555544 444544444
No 17
>COG3462 Predicted membrane protein [Function unknown]
Probab=76.33 E-value=17 Score=30.40 Aligned_cols=52 Identities=12% Similarity=0.143 Sum_probs=25.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcc-----cCCCCCCCCCCCchHHHHHHHHHHHH
Q 015133 338 TQNQLLQMGVLLSAANMILNAGIVVVGLFG-----MNIHITLFDAPTIKFWQTTCGTIGGC 393 (412)
Q Consensus 338 ~rN~lmk~~l~LTi~s~i~~~~t~IaGifG-----MN~~~~pe~~~~~gF~~v~~~~~~~~ 393 (412)
+-|++.-+ .+.+++++..++-.-.|+|| ||...|. ..-||.|++.-++.+.+
T Consensus 4 ~ven~~w~--ligliavi~~v~li~~~~~gg~~y~~gy~gm~--GG~yGm~lImpI~~~vv 60 (117)
T COG3462 4 KVENFAWL--LIGLIAVIAVVGLIPSGFHGGAFYPGGYRGMM--GGLYGMWLIMPIFWAVV 60 (117)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHhhcccccCcccCCCccccc--cchhhhHHHHHHHHHHH
Confidence 44555543 45555555555555555665 4432222 22466666655554433
No 18
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=76.20 E-value=2.5 Score=35.63 Aligned_cols=40 Identities=8% Similarity=0.125 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHH
Q 015133 346 GVLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGT 389 (412)
Q Consensus 346 ~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~ 389 (412)
++.++++|.++...|+|.|+| |+..| .+.-+-|+.+.++.
T Consensus 31 nliiG~vT~l~VLvtii~afv---f~~~~-p~p~~iffavcI~l 70 (118)
T PF10856_consen 31 NLIIGAVTSLFVLVTIISAFV---FPQDP-PKPLHIFFAVCILL 70 (118)
T ss_pred EeehHHHHHHHHHHHHhheEE---ecCCC-CCceEEehHHHHHH
Confidence 347888888888888888775 44333 23335555555443
No 19
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=75.58 E-value=3.2 Score=39.95 Aligned_cols=59 Identities=10% Similarity=-0.104 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHH-hhcccCCCCCCCC---C--CCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015133 349 LSAANMILNAGIVVV-GLFGMNIHITLFD---A--PTIKFWQTTCGTIGGCLALYLIAVGWGKKK 407 (412)
Q Consensus 349 LTi~s~i~~~~t~Ia-GifGMN~~~~pe~---~--~~~gF~~v~~~~~~~~~~l~~~~~~~frrk 407 (412)
.+=++.-++|++.-. -|+|||+...+-. + -.|+||.+.++++++-+++.++.++|.+||
T Consensus 184 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (249)
T PRK15348 184 MQPAEFRMVADVPARQTFWIMDVINANKGKVVKWLMKYPYQLMLSLTGLLLGVGILIGYFCLRRR 248 (249)
T ss_pred ecCCccccCCCCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444445543333 3899999876632 1 236677777766544444444445555554
No 20
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=75.34 E-value=9.2 Score=34.44 Aligned_cols=54 Identities=24% Similarity=0.202 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015133 348 LLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKKIML 410 (412)
Q Consensus 348 ~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl 410 (412)
+.+.+.+.++.+++...+|| .| +..-|++=+++.+++++ +.++.+..+|.+-|+
T Consensus 23 v~~lai~sl~~s~llI~lFg-----~~---~~~nf~~NllGVil~~~-~~~~~l~~~k~~p~m 76 (165)
T PF11286_consen 23 VASLAILSLAFSQLLIALFG-----GE---SGGNFHWNLLGVILGLL-LTSALLRQLKTHPFM 76 (165)
T ss_pred HHHHHHHHHHHHHHHHHHcC-----CC---CCCceeeeHHHHHHHHH-HHHHHHHHHccChHH
Confidence 44445555566788889999 22 12224443334333333 334445578888775
No 21
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=74.84 E-value=7.8 Score=32.04 Aligned_cols=27 Identities=4% Similarity=0.017 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCC
Q 015133 348 LLSAANMILNAGIVVVGLFGMNIHITL 374 (412)
Q Consensus 348 ~LTi~s~i~~~~t~IaGifGMN~~~~p 374 (412)
.++++...+++++++..+.|.=++.-.
T Consensus 44 ~~g~IG~~~v~pil~G~~lG~WLD~~~ 70 (100)
T TIGR02230 44 MFGLIGWSVAIPTLLGVAVGIWLDRHY 70 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 488999999999999999999887554
No 22
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=71.35 E-value=20 Score=29.78 Aligned_cols=51 Identities=10% Similarity=0.206 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 015133 197 LDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEH 250 (412)
Q Consensus 197 Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~ 250 (412)
+++.+...+.++..++.++..-++... ++.|+-+|.+++..++.+...++.
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~~LPt~~d---v~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLEHLPTRDD---VHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333444455555555555555555543 444445555555555554444443
No 23
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=68.94 E-value=90 Score=28.23 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=17.4
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Q 015133 331 INIMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLF 366 (412)
Q Consensus 331 i~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGif 366 (412)
+...+.+.+++++|. ++.++++.++++.|+|
T Consensus 143 lr~~iE~~K~~~lr~-----~~g~i~~~~a~~la~~ 173 (177)
T PF07798_consen 143 LRTEIESLKWDTLRW-----LVGVIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 344455677778874 2344455555555554
No 24
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=66.74 E-value=12 Score=37.92 Aligned_cols=43 Identities=12% Similarity=0.235 Sum_probs=24.0
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCC
Q 015133 329 DCINIMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNIH 371 (412)
Q Consensus 329 e~i~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~ 371 (412)
+++...|.+.....+..-++-|++++.+-..-...=+.||++-
T Consensus 19 ~lfs~~LgsE~~~FV~YHikRT~~tllvHs~LPlgY~~~~~~~ 61 (358)
T PF10272_consen 19 NLFSSWLGSEDYDFVQYHIKRTSATLLVHSCLPLGYFIGMCFF 61 (358)
T ss_pred HHHHHhhCccccchHHHHHhHhHHHHHHHHHHHHHHHhheeEe
Confidence 3445555555555555455566666655544444447788863
No 25
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=65.24 E-value=83 Score=28.03 Aligned_cols=34 Identities=12% Similarity=0.455 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCch
Q 015133 224 LERVRQIKSRLVAINGRVQKVRDEIEHLLDDDND 257 (412)
Q Consensus 224 L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~~d~d 257 (412)
+..|..++.....+..+...+++..++|+.....
T Consensus 27 ~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~ 60 (157)
T PF04136_consen 27 LDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTR 60 (157)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666655443
No 26
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=62.66 E-value=72 Score=25.63 Aligned_cols=27 Identities=4% Similarity=-0.043 Sum_probs=16.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015133 378 PTIKFWQTTCGTIGGCLALYLIAVGWGKKKI 408 (412)
Q Consensus 378 ~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~ 408 (412)
-++|+++.++.+ ++.|++.++|.++-+
T Consensus 52 ~t~g~~~g~~~~----~~~~~l~~~Yv~~An 78 (91)
T PF04341_consen 52 LTLGIVLGLGQI----VFAWVLTWLYVRRAN 78 (91)
T ss_pred cCHHHHHHHHHH----HHHHHHHHHHHHHHc
Confidence 567777766654 334455667776644
No 27
>PRK02935 hypothetical protein; Provisional
Probab=62.36 E-value=64 Score=26.87 Aligned_cols=25 Identities=20% Similarity=-0.035 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 015133 381 KFWQTTCGTIGGCLALYLIAVGWGK 405 (412)
Q Consensus 381 gF~~v~~~~~~~~~~l~~~~~~~fr 405 (412)
+.++....++++.+.+.....+|||
T Consensus 36 ~~~~m~ifm~~G~l~~l~S~vvYFw 60 (110)
T PRK02935 36 SIIIMTIFMLLGFLAVIASTVVYFW 60 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444444445556664
No 28
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=61.47 E-value=23 Score=34.65 Aligned_cols=14 Identities=14% Similarity=0.487 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCCch
Q 015133 244 VRDEIEHLLDDDND 257 (412)
Q Consensus 244 vre~l~~Ll~~d~d 257 (412)
+-+-++.+..++.+
T Consensus 112 l~e~~~~~fg~e~~ 125 (295)
T TIGR01478 112 LLEKYEEMFGDESH 125 (295)
T ss_pred HHHHHHHHhCCccc
Confidence 44567777888887
No 29
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.72 E-value=25 Score=29.49 Aligned_cols=52 Identities=12% Similarity=-0.047 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCC-CCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 015133 351 AANMILNAGIVVVGLFGMNIHITLF-DAPTIKFWQTTCGTIGGCLALYLIAVGWG 404 (412)
Q Consensus 351 i~s~i~~~~t~IaGifGMN~~~~pe-~~~~~gF~~v~~~~~~~~~~l~~~~~~~f 404 (412)
.++++.....+++++.+-|.-..+. .-.||.|.+.. +++.|.+++.+.++..
T Consensus 3 S~~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLn--l~lS~~Aa~~ap~Ilm 55 (108)
T PF06210_consen 3 SWTFIIIFTVFLAVWILLNILAPPRPAFDPYPFILLN--LVLSLEAAYQAPLILM 55 (108)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccCCCCCccHHHHH--HHHHHHHHHHHHHHHH
Confidence 4678888899999999999965442 12455554443 3445556655555443
No 30
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=57.43 E-value=2.3e+02 Score=29.06 Aligned_cols=11 Identities=36% Similarity=0.422 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 015133 185 ALESCLESACR 195 (412)
Q Consensus 185 ~LE~il~~~~~ 195 (412)
+|++++++.-+
T Consensus 261 ~l~aileeL~e 271 (455)
T KOG3850|consen 261 ALDAILEELRE 271 (455)
T ss_pred HHHHHHHHHHH
Confidence 36666655433
No 31
>PTZ00370 STEVOR; Provisional
Probab=56.04 E-value=32 Score=33.73 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCch
Q 015133 243 KVRDEIEHLLDDDND 257 (412)
Q Consensus 243 ~vre~l~~Ll~~d~d 257 (412)
.+-+-++++..++.+
T Consensus 110 el~e~~ee~fg~~~~ 124 (296)
T PTZ00370 110 ELLETYEEMFGDESD 124 (296)
T ss_pred HHHHHHHHHhcCccc
Confidence 355678888888888
No 32
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.68 E-value=1.9e+02 Score=27.33 Aligned_cols=29 Identities=10% Similarity=0.261 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015133 223 NLERVRQIKSRLVAINGRVQKVRDEIEHL 251 (412)
Q Consensus 223 ~L~~L~~lk~~L~~l~~~v~~vre~l~~L 251 (412)
.+..|.++|.-|.........+|.-+...
T Consensus 87 ~~htL~RHrEILqdy~qef~rir~n~~a~ 115 (231)
T KOG3208|consen 87 VMHTLQRHREILQDYTQEFRRIRSNIDAK 115 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444444444444333
No 33
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=52.97 E-value=35 Score=30.22 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCC
Q 015133 336 DDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNIH 371 (412)
Q Consensus 336 d~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~ 371 (412)
|.+-+++++ +-+++|+.+++..++.|++=+++.
T Consensus 59 ~k~~~k~l~---kt~~iSF~~avLGiifgI~~qll~ 91 (161)
T PF13042_consen 59 DKKFSKVLI---KTNVISFNFAVLGIIFGIIHQLLG 91 (161)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555 699999999999999999999885
No 34
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=52.63 E-value=35 Score=29.25 Aligned_cols=29 Identities=3% Similarity=-0.249 Sum_probs=13.4
Q ss_pred cccCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 015133 366 FGMNIHITLFDAPTIKFWQTTCGTIGGCLAL 396 (412)
Q Consensus 366 fGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l 396 (412)
.+.++.+.+ ..+.-.++++++|+++.+++
T Consensus 53 ~~~ql~h~f--s~~~i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 53 ERSQLVHRF--SEPAIIGIIFGVMAGVIGII 81 (122)
T ss_dssp ---SSSSSS--S-TCHHHHHHHHHHHHHHHH
T ss_pred CCcccccCc--cccceeehhHHHHHHHHHHH
Confidence 344555544 23455666766665543333
No 35
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=51.89 E-value=2.2e+02 Score=27.09 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=12.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 015133 338 TQNQLLQMGVLLSAANMILNAGIVVV 363 (412)
Q Consensus 338 ~rN~lmk~~l~LTi~s~i~~~~t~Ia 363 (412)
+.+.+.+ -++++-++|+..++|.
T Consensus 146 ~~k~~~~---gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 146 RQKSMYK---GIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHH---hHHHHHHHHHHHHHHH
Confidence 3444444 4556666666555554
No 36
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=51.24 E-value=22 Score=32.34 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 015133 348 LLSAANMILNAGIVVVGLFG 367 (412)
Q Consensus 348 ~LTi~s~i~~~~t~IaGifG 367 (412)
+++++++++++.-+++|+-|
T Consensus 6 i~~i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 6 IISIILIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555556655
No 37
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=51.12 E-value=37 Score=24.57 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHH
Q 015133 348 LLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGG 392 (412)
Q Consensus 348 ~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~ 392 (412)
..+-++++++...+..|+| |.+..+ |.-||+.+..++++.
T Consensus 3 ~~~~~~f~i~~~~~~iGl~--~~~~~l---~~KGy~~~~~l~~l~ 42 (53)
T PF05360_consen 3 GQSWISFGISIVLMLIGLW--NAPLDL---SEKGYYAMGLLFLLF 42 (53)
T ss_pred hHHHHHHHHHHHHHHHHHH--hCCCCH---HHHHHHHHHHHHHHH
Confidence 3667888999999999999 554322 556888887665443
No 38
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=50.86 E-value=4.2e+02 Score=30.04 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=11.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 015133 379 TIKFWQTTCGTIGGCLALYLIAVGW 403 (412)
Q Consensus 379 ~~gF~~v~~~~~~~~~~l~~~~~~~ 403 (412)
+|+++...++.+++|+++.++++.+
T Consensus 408 ~y~~yR~~~~lil~~~llLIv~~~~ 432 (806)
T PF05478_consen 408 KYDSYRWIVGLILCCVLLLIVLCLL 432 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544444444444454444444333
No 39
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=48.25 E-value=2.2e+02 Score=26.78 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 015133 348 LLSAANMILNAGIVVVGLF 366 (412)
Q Consensus 348 ~LTi~s~i~~~~t~IaGif 366 (412)
.+|+.++.+.+.++ ..+|
T Consensus 44 r~tv~slAl~~l~~-S~iy 61 (251)
T COG5415 44 RLTVYSLALTVLAL-SYIY 61 (251)
T ss_pred HHhHHHHHHHHHHH-HHHH
Confidence 46666666655544 3344
No 40
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=48.20 E-value=55 Score=31.25 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=12.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcc
Q 015133 338 TQNQLLQMGVLLSAANMILNAGIVVVGLFG 367 (412)
Q Consensus 338 ~rN~lmk~~l~LTi~s~i~~~~t~IaGifG 367 (412)
+++++++.=+.+-+.+++-+...++.|.++
T Consensus 4 ~k~~~~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 4 KKKRILRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666653333333333333333344444
No 41
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=48.18 E-value=53 Score=30.45 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHhhhc
Q 015133 106 VVQFVQDLQHRISSL 120 (412)
Q Consensus 106 ~~~f~~~l~~rl~~~ 120 (412)
.++|+..+.+.|...
T Consensus 6 N~~y~~~l~~~L~~~ 20 (206)
T PF06570_consen 6 NQEYIFDLRKYLRSS 20 (206)
T ss_pred HHHHHHHHHHHHHHc
Confidence 346777777777443
No 42
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=48.15 E-value=2e+02 Score=25.54 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhHHhHHH
Q 015133 308 AQIDGILQKLSDMSEYVDDTED 329 (412)
Q Consensus 308 ~~~d~~~~~l~~l~e~i~~tee 329 (412)
+.++.+..++..++..++..|.
T Consensus 126 ~~v~~La~qIK~Ik~~lD~lE~ 147 (149)
T PF10157_consen 126 KPVYKLAQQIKDIKKLLDLLES 147 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777777766666553
No 43
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=47.88 E-value=1.2e+02 Score=25.70 Aligned_cols=25 Identities=12% Similarity=-0.162 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 015133 381 KFWQTTCGTIGGCLALYLIAVGWGK 405 (412)
Q Consensus 381 gF~~v~~~~~~~~~~l~~~~~~~fr 405 (412)
+.++.+..++++.+++.....+|||
T Consensus 35 ~~~im~ifmllG~L~~l~S~~VYfw 59 (114)
T PF11023_consen 35 SPIIMVIFMLLGLLAILASTAVYFW 59 (114)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555654
No 44
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=46.94 E-value=27 Score=30.00 Aligned_cols=50 Identities=4% Similarity=-0.211 Sum_probs=31.2
Q ss_pred HHHHHhhcccCCCCCC-------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015133 359 GIVVVGLFGMNIHITL-------FDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKKI 408 (412)
Q Consensus 359 ~t~IaGifGMN~~~~p-------e~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~ 408 (412)
..+.=+...+|=...+ ..+..+.|++++++|...+++++.+|+-|.|-||
T Consensus 14 ~~l~q~~~~~~~nsS~la~~~~~s~~~~~~~lYIL~vmgfFgff~~gImlsyvRSKK 70 (129)
T PF02060_consen 14 SKLWQETVQQSSNSSPLASRSPSSSDDDNEYLYILVVMGFFGFFTVGIMLSYVRSKK 70 (129)
T ss_dssp HHHHHHHHHT--TTSSGGGS-S--TT-SSTT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcccccCCCCCCCCceeehHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666533222 1223466888888888888888889999999876
No 45
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=46.02 E-value=1.4e+02 Score=24.18 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=11.8
Q ss_pred hHHHHHHHHhHHHHHHHHH
Q 015133 326 DTEDCINIMLDDTQNQLLQ 344 (412)
Q Consensus 326 ~tee~i~~~Ld~~rN~lmk 344 (412)
+.+|.+..+.+.+||.+.+
T Consensus 3 ~~~~~~~~Y~~~H~~~~n~ 21 (95)
T PF06127_consen 3 SLEEFFAFYLSYHRNPINR 21 (95)
T ss_pred CHHHHHHHHHHHcCCHhhH
Confidence 4555666666666666665
No 46
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=45.91 E-value=1e+02 Score=28.13 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 015133 195 RCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHLL 252 (412)
Q Consensus 195 ~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll 252 (412)
..+|.+++.|+...+...+.+. ..++.-..++++++.++.++..+-+-+.++|
T Consensus 82 inlE~kvD~lee~fdd~~d~l~-----~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L 134 (189)
T TIGR02132 82 INLEEKVDLIEEFFDDKFDELE-----AQQEQAPALKKDVTKLKQDIKSLDKKLDKIL 134 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHhhCchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444443 2233444566677777777766666666555
No 47
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=44.90 E-value=39 Score=27.38 Aligned_cols=26 Identities=19% Similarity=0.004 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCC
Q 015133 345 MGVLLSAANMILNAGIVVVGLFGMNI 370 (412)
Q Consensus 345 ~~l~LTi~s~i~~~~t~IaGifGMN~ 370 (412)
.|.+|++++.++.....+.+++...+
T Consensus 4 ~E~iL~~Ig~il~il~~~~~l~~~~~ 29 (100)
T PF13273_consen 4 AEKILGWIGGILGILFGFFGLLIGFF 29 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888776655444444444
No 48
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=44.30 E-value=2.2e+02 Score=29.49 Aligned_cols=13 Identities=8% Similarity=0.411 Sum_probs=10.9
Q ss_pred HhHHHHHHHHHhh
Q 015133 334 MLDDTQNQLLQMG 346 (412)
Q Consensus 334 ~Ld~~rN~lmk~~ 346 (412)
.+.+-+|+|-|+|
T Consensus 306 ~~Es~qtRisklE 318 (395)
T PF10267_consen 306 VMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHH
Confidence 4567899999999
No 49
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=44.12 E-value=2e+02 Score=24.36 Aligned_cols=27 Identities=19% Similarity=0.039 Sum_probs=13.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 015133 337 DTQNQLLQMGVLLSAANMILNAGIVVVG 364 (412)
Q Consensus 337 ~~rN~lmk~~l~LTi~s~i~~~~t~IaG 364 (412)
.+||-+.++ +-+++++......-+..|
T Consensus 21 l~rnli~~l-igl~im~~avnL~~v~~g 47 (117)
T PRK12659 21 LRRSIVKLV-IGLILLGNAANLLIFTVG 47 (117)
T ss_pred HhccHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 377766553 344455544444444444
No 50
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=44.00 E-value=4e+02 Score=27.82 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHhH
Q 015133 305 AYFAQIDGILQKLSDMSEYVDDTEDCINIMLD 336 (412)
Q Consensus 305 ~Y~~~~d~~~~~l~~l~e~i~~tee~i~~~Ld 336 (412)
+-.+-|+.+..+++.|.+.+..+-++.....|
T Consensus 302 PAmrTC~a~~~R~~~Ls~rv~Ra~~LLRTrVd 333 (420)
T PF11902_consen 302 PAMRTCEAVERRQEDLSRRVARATDLLRTRVD 333 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33445777777777777777777766655554
No 51
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=42.60 E-value=1.6e+02 Score=23.26 Aligned_cols=26 Identities=4% Similarity=-0.160 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCC
Q 015133 348 LLSAANMILNAGIVVVGLFGMNIHIT 373 (412)
Q Consensus 348 ~LTi~s~i~~~~t~IaGifGMN~~~~ 373 (412)
..|++.+++-..--..+-||..-..+
T Consensus 8 ~~tl~l~l~yf~~W~~~ay~~~~~~~ 33 (80)
T PF06196_consen 8 RWTLGLTLIYFAWWYGFAYGLGNGDG 33 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 35555555555556667778775433
No 52
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=41.38 E-value=57 Score=28.66 Aligned_cols=11 Identities=18% Similarity=-0.037 Sum_probs=6.8
Q ss_pred HHHHHhhcCCC
Q 015133 400 AVGWGKKKIML 410 (412)
Q Consensus 400 ~~~~frrk~wl 410 (412)
.+.+||||+-+
T Consensus 74 ~~lffkr~~~~ 84 (149)
T PF10754_consen 74 LYLFFKRKRRF 84 (149)
T ss_pred HHHHHHccchh
Confidence 45567777654
No 53
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=41.29 E-value=49 Score=25.64 Aligned_cols=29 Identities=7% Similarity=-0.113 Sum_probs=19.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 015133 377 APTIKFWQTTCGTIGGCLALYLIAVGWGK 405 (412)
Q Consensus 377 ~~~~gF~~v~~~~~~~~~~l~~~~~~~fr 405 (412)
++||+|...+++++.-..++..++.|++.
T Consensus 17 kdP~~Fl~~vll~LtPlfiisa~lSwkLa 45 (74)
T PF15086_consen 17 KDPYEFLTTVLLILTPLFIISAVLSWKLA 45 (74)
T ss_pred cChHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 57999998887766555555555555543
No 54
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=41.27 E-value=41 Score=27.57 Aligned_cols=29 Identities=7% Similarity=0.001 Sum_probs=23.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015133 378 PTIKFWQTTCGTIGGCLALYLIAVGWGKK 406 (412)
Q Consensus 378 ~~~gF~~v~~~~~~~~~~l~~~~~~~frr 406 (412)
.||.-+.|+.+.+++++.++++++++.|+
T Consensus 16 ~PWeIfLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 16 KPWEIFLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46777788888888888888888888865
No 55
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=41.11 E-value=37 Score=25.96 Aligned_cols=53 Identities=15% Similarity=-0.065 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015133 351 AANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKKI 408 (412)
Q Consensus 351 i~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~ 408 (412)
-+|=.-+.+++..++++.==...| .+|++..++++++ ..++-.+.=+|||+|+
T Consensus 7 g~aYgtSag~~~~wl~~lld~~sp---~qW~aIGvi~gi~--~~~lt~ltN~YFK~k~ 59 (68)
T PF04971_consen 7 GAAYGTSAGSAGYWLLQLLDQFSP---SQWAAIGVIGGIF--FGLLTYLTNLYFKIKE 59 (68)
T ss_pred hhccccchhhHHHHHHHHHhccCc---ccchhHHHHHHHH--HHHHHHHhHhhhhhhH
Confidence 333344445555555553222333 3466666666543 2344455678888874
No 56
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=40.52 E-value=77 Score=25.79 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCC
Q 015133 348 LLSAANMILNAGIVVVGLFGMNIH 371 (412)
Q Consensus 348 ~LTi~s~i~~~~t~IaGifGMN~~ 371 (412)
.+-++.+++++++.++|++=+...
T Consensus 7 wll~~G~l~~~~A~~~G~~d~~~~ 30 (104)
T PF09990_consen 7 WLLVLGLLGAIVAVLTGFVDLLTV 30 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 466777888888888888877775
No 57
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=40.48 E-value=73 Score=23.98 Aligned_cols=38 Identities=5% Similarity=0.044 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHH
Q 015133 347 VLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTT 386 (412)
Q Consensus 347 l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~ 386 (412)
++++.+++..+.+.+.+.+-||=|+...+ -+||.+.++
T Consensus 8 ivlAtiavFiaLagl~~~I~GlLfD~~~~--~~yg~~al~ 45 (62)
T PF11177_consen 8 IVLATIAVFIALAGLAAVIHGLLFDEERV--FRYGVIALV 45 (62)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccch--hHHHHHHHH
Confidence 36888888889999999999998876542 344444333
No 58
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=40.36 E-value=1.4e+02 Score=27.24 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015133 225 ERVRQIKSRLVAINGRVQKVRDEIEHL 251 (412)
Q Consensus 225 ~~L~~lk~~L~~l~~~v~~vre~l~~L 251 (412)
-+|+++++++-++..+++.+-..+.++
T Consensus 118 Yqll~hr~e~ee~~~~l~~le~~~~~~ 144 (175)
T PRK13182 118 YQLLQHRREMEEMLERLQKLEARLKKL 144 (175)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999998887777763
No 59
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=39.97 E-value=2.9e+02 Score=25.01 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCC
Q 015133 310 IDGILQKLSDMSEYVDDTEDCINIMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNI 370 (412)
Q Consensus 310 ~d~~~~~l~~l~e~i~~tee~i~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~ 370 (412)
+..+...++...+.|....+.+|.....--+.+-+ -|..+||++||+.=
T Consensus 120 ~~~l~~~l~~~E~~I~~aR~~YN~av~~yN~~i~~------------FP~~lvA~~~gf~~ 168 (186)
T PF04011_consen 120 FQQLMAQLEETENRIAAARRAYNDAVRDYNTAIRQ------------FPTNLVAGIFGFKP 168 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHhcCCCc
Confidence 44556667777777777777776655443333323 38999999999653
No 60
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=39.85 E-value=58 Score=29.15 Aligned_cols=39 Identities=15% Similarity=0.469 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhcCCchhHHH
Q 015133 223 NLERVRQIKSRLVAINGRV---QKVRDEIEHLLDDDNDMAEM 261 (412)
Q Consensus 223 ~L~~L~~lk~~L~~l~~~v---~~vre~l~~Ll~~d~dm~~m 261 (412)
.|.+|..+|+.|..|+..+ ..+|..|++++.+.+.+..+
T Consensus 110 ~L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~~~~~~~~l 151 (157)
T PF05591_consen 110 ELRKLLELREQLRDLKGPLDNNPAFRKLLQEILSDPEALEKL 151 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHCCHHHHHHH
Confidence 4678888899999998887 56899999999888766543
No 61
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=39.46 E-value=6.9 Score=32.03 Aligned_cols=11 Identities=0% Similarity=-0.127 Sum_probs=5.2
Q ss_pred HHHHHHHhhcC
Q 015133 398 LIAVGWGKKKI 408 (412)
Q Consensus 398 ~~~~~~frrk~ 408 (412)
++.|||++|+|
T Consensus 85 ~l~w~f~~r~k 95 (96)
T PTZ00382 85 FLCWWFVCRGK 95 (96)
T ss_pred HHhheeEEeec
Confidence 34455554544
No 62
>PHA03231 glycoprotein BALF4; Provisional
Probab=39.04 E-value=1.7e+02 Score=33.25 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=11.7
Q ss_pred Eecccceeeee-cCeeEEecCCCc
Q 015133 82 INLEHIKAIVT-AKEVLMLYSTNP 104 (412)
Q Consensus 82 vnle~ir~II~-~d~vllf~~~~~ 104 (412)
+.-+.+..-.+ ...++.+||--+
T Consensus 358 v~~G~vqyy~t~GGl~i~wQpl~~ 381 (829)
T PHA03231 358 VKNGDVQYYLTTGGLLLAWQPLLS 381 (829)
T ss_pred ccCCceEEEEecCcEEEEEccCCc
Confidence 33344444444 445667786643
No 63
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=38.39 E-value=1.1e+02 Score=28.22 Aligned_cols=36 Identities=8% Similarity=0.055 Sum_probs=24.2
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccc
Q 015133 332 NIMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGM 368 (412)
Q Consensus 332 ~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGM 368 (412)
--.++-+||++..+.+- .+.+.+|+++.++.|.++|
T Consensus 87 ~G~~s~~rN~i~~l~~y-~~~~~~~gl~pl~~g~~~~ 122 (186)
T PF07086_consen 87 LGLLSLRRNNISLLRLY-MIGSSLFGLLPLIYGAMYY 122 (186)
T ss_pred HHHHhcccchHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34456789988766332 3566677788888888774
No 64
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=37.89 E-value=61 Score=29.09 Aligned_cols=39 Identities=18% Similarity=0.450 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhcCCchhHHH
Q 015133 223 NLERVRQIKSRLVAINGRV---QKVRDEIEHLLDDDNDMAEM 261 (412)
Q Consensus 223 ~L~~L~~lk~~L~~l~~~v---~~vre~l~~Ll~~d~dm~~m 261 (412)
.|.+|+.+|+.|..|++.+ ..+|+.|++++.|++.+..+
T Consensus 111 ~L~~LlelR~~L~~L~~~l~~~~~~~~~l~~~l~d~~~~~~L 152 (159)
T TIGR03358 111 ELKKLLEAREALRDLKGPLDNNPDLRKLLQELLKDKDLLEKL 152 (159)
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHCCHHHHHHH
Confidence 4678888899999999887 67999999999887765543
No 65
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=37.54 E-value=1.2e+02 Score=30.00 Aligned_cols=45 Identities=7% Similarity=0.052 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 015133 348 LLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIA 400 (412)
Q Consensus 348 ~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~ 400 (412)
.+|.+|++++...+.. ||- +.-.+.++..+.|+++.....++++.
T Consensus 231 l~TslTt~l~llpL~l--~G~------~~~~~fA~~li~Gli~gt~sslfva~ 275 (297)
T PRK13021 231 MVTSGTTLMTVGALWI--MGG------GPLEGFSIAMFIGILTGTFSSISVGT 275 (297)
T ss_pred HHHHHHHHHHHHHHHH--Hhh------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666665444432 233 22345566666555444334444443
No 66
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=37.28 E-value=2e+02 Score=30.68 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCC
Q 015133 297 EELEMLLEAYFAQIDGILQKLSDMSEYVDDTEDCINIMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNI 370 (412)
Q Consensus 297 eEvE~LLE~Y~~~~d~~~~~l~~l~e~i~~tee~i~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~ 370 (412)
+.+|..|..|..++..+-..+..|++.-.. ++..|.|++.-.-++ =.++.-+..||.+|-.|--=++
T Consensus 31 ~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~----l~~~L~Nrk~~~~~L---~~~i~~i~ipP~lI~~I~~~~v 97 (508)
T PF04129_consen 31 ESLEEMLSNFQNDLGSISSEIRSLQERSSS----LNVKLKNRKAVEEKL---SPFIDDIVIPPDLIRSICEGPV 97 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHH---HHHHHHHcCCHHHHHhHhcCCC
Confidence 345556677778888888888888876655 578888888888874 6677778889999999976555
No 67
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=37.21 E-value=4.4e+02 Score=26.33 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=5.4
Q ss_pred HHHHHHHHHHh
Q 015133 242 QKVRDEIEHLL 252 (412)
Q Consensus 242 ~~vre~l~~Ll 252 (412)
..++++|.+|.
T Consensus 32 d~l~~~L~~l~ 42 (313)
T PF05461_consen 32 DALREALKELT 42 (313)
T ss_pred HHHHHHHHHHH
Confidence 44555555544
No 68
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=37.20 E-value=4e+02 Score=25.88 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc------hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCch
Q 015133 184 RALESCLESACRCLDSETRTLEEEAYPALDELTTKIS------TLNLERVRQIKSRLVAINGRVQKVRDEIEHLLDDDND 257 (412)
Q Consensus 184 ~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~------~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~~d~d 257 (412)
+=+|+-++.-+..++.+.++++.....+--++...-. ...-..+-.|++.|...+..-..+|.-+.+|-.-.+|
T Consensus 44 rE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDd 123 (333)
T KOG1853|consen 44 REIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDD 123 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 4456666666677777766666665544322222111 1112234456666666666666666666666433333
No 69
>PF01769 MgtE: Divalent cation transporter; InterPro: IPR006667 This entry represents the integral membrane part of the eubacterial MgtE family of magnesium transporters. Related regions are found also in archaebacterial and eukaryotic proteins. All the archaebacterial and eukaryotic examples have two copies of the region. This suggests that the eubacterial examples may act as dimers.Proteins in this entry probably transport Mg2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport; PDB: 2YVX_D 2ZY9_A.
Probab=36.95 E-value=2.6e+02 Score=23.70 Aligned_cols=13 Identities=8% Similarity=-0.483 Sum_probs=7.1
Q ss_pred HHHHHHHHhhcCC
Q 015133 397 YLIAVGWGKKKIM 409 (412)
Q Consensus 397 ~~~~~~~frrk~w 409 (412)
...+-..++|+||
T Consensus 97 ~~~l~~~~~k~g~ 109 (135)
T PF01769_consen 97 GYLLPIILWKIGL 109 (135)
T ss_dssp HHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcCC
Confidence 3344556677775
No 70
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=36.07 E-value=2.5e+02 Score=24.20 Aligned_cols=62 Identities=24% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015133 190 LESACRCLDSETRTLEEEAYPALDELTT--KISTLNLERVRQIKSRLVAINGRVQKVRDEIEHL 251 (412)
Q Consensus 190 l~~~~~~Le~~~~~le~~~~~ild~l~~--~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~L 251 (412)
|+.+.+.|...=+.|..+++.+-+.+.+ .++...-+.+-.++..+..+...+..++.++..|
T Consensus 52 l~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 52 LEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
No 71
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=36.07 E-value=1.4e+02 Score=26.35 Aligned_cols=18 Identities=33% Similarity=0.754 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhcccCC
Q 015133 353 NMILNAGIVVVGLFGMNI 370 (412)
Q Consensus 353 s~i~~~~t~IaGifGMN~ 370 (412)
-+++.++-.+||+||.|=
T Consensus 82 lLlivIgivvaGvygi~k 99 (169)
T COG5130 82 LLLIVIGIVVAGVYGIRK 99 (169)
T ss_pred HHHHHHhhhhheeeehhh
Confidence 345667888999999984
No 72
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=35.82 E-value=1.7e+02 Score=26.13 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCCC
Q 015133 345 MGVLLSAANMILNAGIVVVGLFGMNIHI 372 (412)
Q Consensus 345 ~~l~LTi~s~i~~~~t~IaGifGMN~~~ 372 (412)
++..||+++=+.-+.-++.|+.+| |.+
T Consensus 17 iD~~lT~~aW~gfi~l~~~~~~~~-~~~ 43 (153)
T PRK14584 17 IDIILTALAWFGFLFLLVRGLLEM-ISR 43 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 456788888777778888899998 543
No 73
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=35.80 E-value=51 Score=35.93 Aligned_cols=51 Identities=12% Similarity=-0.046 Sum_probs=34.3
Q ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHH
Q 015133 333 IMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGT 389 (412)
Q Consensus 333 ~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~ 389 (412)
..+-.++++.+. +.+.++.+.+.+++.+.++-.+... ..|.|.||...+..
T Consensus 156 sEl~p~k~R~~~----~~~~~~~~i~~~~~~~~ia~~~~~~--~~WRw~~~~~~i~~ 206 (599)
T PF06609_consen 156 SELVPNKWRGLG----LAIASIPFIITTWISPLIAQLFAAH--SGWRWIFYIFIIWS 206 (599)
T ss_pred HHhcccchhhhH----hHHHHHHHHhhhcccHHHHHHhccC--CCcchHHHHHHHHH
Confidence 334467888665 5566666777777778887766432 47999998776543
No 74
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=35.76 E-value=59 Score=20.63 Aligned_cols=9 Identities=22% Similarity=0.032 Sum_probs=4.1
Q ss_pred HHHHHHhhc
Q 015133 399 IAVGWGKKK 407 (412)
Q Consensus 399 ~~~~~frrk 407 (412)
+.+++.|||
T Consensus 24 ~~~~~~~rk 32 (34)
T TIGR01167 24 GGLLLRKRK 32 (34)
T ss_pred HHHHheecc
Confidence 344444544
No 75
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=35.68 E-value=1.2e+02 Score=27.89 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=25.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhcccCCCCCCC-CCCCchHHHHHHHHHHHH
Q 015133 344 QMGVLLSAANMILNAGIVVVGLFGMNIHITLF-DAPTIKFWQTTCGTIGGC 393 (412)
Q Consensus 344 k~~l~LTi~s~i~~~~t~IaGifGMN~~~~pe-~~~~~gF~~v~~~~~~~~ 393 (412)
-+.++|++++.+....+++ ++=+..++-. .....|+++++++.++++
T Consensus 23 W~QlvLgvVs~~iL~F~~~---~~~~~~~~~~~~G~~~gl~~a~~gl~~l~ 70 (183)
T PF12263_consen 23 WIQLVLGVVSAVILLFANL---FSGRATSPNRNPGLGIGLFLAICGLVALF 70 (183)
T ss_pred HHHHHHHHHHHHHHHHHhh---ccccCCCCCcCCCcchHHHHHHHHHHHHH
Confidence 3455888888777666642 3334333221 123467777776654444
No 76
>COG5487 Small integral membrane protein [Function unknown]
Probab=35.13 E-value=1.3e+02 Score=21.74 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhcccC
Q 015133 352 ANMILNAGIVVVGLFGMN 369 (412)
Q Consensus 352 ~s~i~~~~t~IaGifGMN 369 (412)
|+++|.+.++|+|.+|.-
T Consensus 4 waliFlvialIa~~lGFg 21 (54)
T COG5487 4 WALIFLVIALIAGALGFG 21 (54)
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 678899999999999853
No 77
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=34.98 E-value=2.2e+02 Score=22.36 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=11.9
Q ss_pred CCCCchHHHHHHHHH
Q 015133 376 DAPTIKFWQTTCGTI 390 (412)
Q Consensus 376 ~~~~~gF~~v~~~~~ 390 (412)
...|.|||.+.-+..
T Consensus 38 ~GfPlgfw~aaQGsi 52 (77)
T TIGR03647 38 FGFPLGFWFAQQGSI 52 (77)
T ss_pred CCCChHHHHHHhhHH
Confidence 468999999887754
No 78
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=34.35 E-value=99 Score=32.02 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=32.5
Q ss_pred HHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015133 359 GIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKKIM 409 (412)
Q Consensus 359 ~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~w 409 (412)
.-+-.|+||-|--+-...+...++-.+...+..++..+....+-|++++||
T Consensus 205 ~lLWfGWfGFN~GSal~~~~~a~~a~~nT~lAaa~g~l~w~~~e~~~~~Kp 255 (409)
T COG0004 205 ALLWFGWFGFNAGSALAANGVAALAFVNTNLAAAAGALGWMLIEWLRNGKP 255 (409)
T ss_pred HHHHHHHccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345679999999888765544444444444444555555566667777765
No 79
>PRK10881 putative hydrogenase 2 b cytochrome subunit; Provisional
Probab=34.18 E-value=1.7e+02 Score=29.95 Aligned_cols=53 Identities=21% Similarity=0.126 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhh---cccCCCCCCCCCCCchHHHHH---HHHHHHHHHHHHHHHHHHhhcCC
Q 015133 351 AANMILNAGIVVVGL---FGMNIHITLFDAPTIKFWQTT---CGTIGGCLALYLIAVGWGKKKIM 409 (412)
Q Consensus 351 i~s~i~~~~t~IaGi---fGMN~~~~pe~~~~~gF~~v~---~~~~~~~~~l~~~~~~~frrk~w 409 (412)
++.+.....-++.|+ .|||= +.+||+|++. ..+.+++.+..+..+.|.-++++
T Consensus 27 ~~g~~~~~~~~~~Glg~vtg~~~------~~~WGl~I~~y~~~~vglaag~~~is~~~~vf~~~~ 85 (394)
T PRK10881 27 VICMLLIVKRFVFGLGSVSNLNG------GYPWGIWIAFDVLIGTGFACGGWALAWLVYVFNRGQ 85 (394)
T ss_pred HHHHHHHHHHHHhcchhhcCCCC------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 333333344444443 56664 3556777663 22233444444555555433444
No 80
>COG5570 Uncharacterized small protein [Function unknown]
Probab=34.11 E-value=1.2e+02 Score=22.05 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHH
Q 015133 194 CRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKV 244 (412)
Q Consensus 194 ~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~v 244 (412)
+..|+.+...+++.+.... ..++.+. ..++.||++=..++..+..+
T Consensus 7 l~eL~kkHg~le~ei~ea~----n~Ps~dd-~~i~eLKRrKL~lKeeIEkL 52 (57)
T COG5570 7 LAELEKKHGNLEREIQEAM----NSPSSDD-LAIRELKRRKLRLKEEIEKL 52 (57)
T ss_pred HHHHHHhhchHHHHHHHHh----cCCCcch-HHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666654432 2222222 23556666655555444443
No 81
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=33.65 E-value=6.4e+02 Score=27.21 Aligned_cols=59 Identities=17% Similarity=0.329 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCch
Q 015133 199 SETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHLLDDDND 257 (412)
Q Consensus 199 ~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~~d~d 257 (412)
..+.+++..+..+.+....--....-..+..+...|..++..+..+++.|++|+..+..
T Consensus 75 ~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~ 133 (560)
T PF06160_consen 75 KQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEK 133 (560)
T ss_pred HhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666665555544322112223446677778888888888888888888876653
No 82
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=32.55 E-value=1.8e+02 Score=28.29 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=42.8
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHH-----HHhhhHHHHHHHH
Q 015133 175 GPKVLAFEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVA-----INGRVQKVRDEIE 249 (412)
Q Consensus 175 ~~~~lpFEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~-----l~~~v~~vre~l~ 249 (412)
.+...|| .+++.++...+..++.-....-+.+...+..+...+-...+.+.-.|++.+.. +++...+.++.++
T Consensus 186 lp~f~p~--~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~~i~~~v~~~l~~~~~~a~~~i~ 263 (295)
T PF01031_consen 186 LPGFVPE--SAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFPNLKEAIKEAVQQLLEECREPAKEMIE 263 (295)
T ss_dssp SS-SCCH--HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567787 88888888877766654444444444444444333333334433344444332 4444566666777
Q ss_pred HHhcCC
Q 015133 250 HLLDDD 255 (412)
Q Consensus 250 ~Ll~~d 255 (412)
.+++.+
T Consensus 264 ~li~~E 269 (295)
T PF01031_consen 264 NLIDME 269 (295)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776543
No 83
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=32.27 E-value=3.9e+02 Score=25.46 Aligned_cols=13 Identities=8% Similarity=0.368 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHh
Q 015133 393 CLALYLIAVGWGK 405 (412)
Q Consensus 393 ~~~l~~~~~~~fr 405 (412)
.+++|++|+++.|
T Consensus 237 v~~~Fi~mvl~ir 249 (251)
T PF09753_consen 237 VIIVFIMMVLFIR 249 (251)
T ss_pred HHHHHHHHHHHhe
Confidence 3456677776654
No 84
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=31.99 E-value=72 Score=22.21 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=5.6
Q ss_pred HHHHHHHhhcCC
Q 015133 398 LIAVGWGKKKIM 409 (412)
Q Consensus 398 ~~~~~~frrk~w 409 (412)
.+++.+.+++++
T Consensus 21 l~~~~~~~~r~~ 32 (46)
T PF04995_consen 21 LIVWSLRRRRRL 32 (46)
T ss_pred HHHHHHHHHHHH
Confidence 334445555543
No 85
>PF06195 DUF996: Protein of unknown function (DUF996); InterPro: IPR010397 This is a family of uncharacterised bacterial and archaeal proteins.
Probab=31.91 E-value=3.5e+02 Score=23.59 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=12.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Q 015133 339 QNQLLQMGVLLSAANMILNAGIVV 362 (412)
Q Consensus 339 rN~lmk~~l~LTi~s~i~~~~t~I 362 (412)
+|-+.-+ .++++..++....++
T Consensus 28 ~~~L~~~--I~~ii~~vv~~~~~~ 49 (139)
T PF06195_consen 28 NNYLYAF--ILGIIGFVVFIILIF 49 (139)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHH
Confidence 5556555 566665555544444
No 86
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=31.77 E-value=1.4e+02 Score=23.27 Aligned_cols=66 Identities=8% Similarity=-0.122 Sum_probs=31.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015133 341 QLLQMGVLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKKIM 409 (412)
Q Consensus 341 ~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~w 409 (412)
+.+|...+=-++=+++-..-++++.+..|-... ...++.+.++.+.+..+++++ =.+++.+++|.|
T Consensus 9 r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~--~~p~~~l~~i~~~~~~~~G~V-D~lvf~~~erpw 74 (76)
T PF11970_consen 9 RQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIG--HGPSFWLFCIAGFMQPSQGFV-DCLVFTLRERPW 74 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCchHHHHHHHHHHHccCHH-HhhheeeecccC
Confidence 334432334444445555456677777663211 122344444444444444333 234455677776
No 87
>CHL00159 rpl13 ribosomal protein L13; Validated
Probab=31.43 E-value=40 Score=29.75 Aligned_cols=55 Identities=31% Similarity=0.388 Sum_probs=34.4
Q ss_pred CCCCCceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCCeEEEecccc
Q 015133 22 RKGMGLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRERAIVINLEHI 87 (412)
Q Consensus 22 ~~~~~~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~~Ilvnle~i 87 (412)
+.....|.|..||+.|..--.-. +.+... |+ .=-| .|.|.+.+-+..||||-+.+
T Consensus 8 ~~~~~~r~W~viDA~~~~lGRlA--s~iA~~-------L~GKhKp--~ytP~~d~Gd~VVViNa~kv 63 (143)
T CHL00159 8 SKDYKNRKWYIIDAKDQTLGRLA--TKIASL-------LRGKNKP--SYHPSVDTGDYVIVINAEKI 63 (143)
T ss_pred CchhcCCCEEEEeCCCCchHHHH--HHHHHH-------HhccCCC--CcCCCcCCCCEEEEEeccee
Confidence 34455789999999887432101 122221 11 1113 67788999999999998876
No 88
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=31.30 E-value=59 Score=28.68 Aligned_cols=29 Identities=7% Similarity=-0.042 Sum_probs=14.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015133 379 TIKFWQTTCGTIGGCLALYLIAVGWGKKKI 408 (412)
Q Consensus 379 ~~gF~~v~~~~~~~~~~l~~~~~~~frrk~ 408 (412)
.+-|.+ ++++++..+++|+..+|+-+|||
T Consensus 29 thm~tI-LiaIvVliiiiivli~lcssRKk 57 (189)
T PF05568_consen 29 THMYTI-LIAIVVLIIIIIVLIYLCSSRKK 57 (189)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhhhhH
Confidence 343443 33444555556665566656654
No 89
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=30.93 E-value=64 Score=22.41 Aligned_cols=9 Identities=0% Similarity=-0.182 Sum_probs=3.9
Q ss_pred HHHHHhhcC
Q 015133 400 AVGWGKKKI 408 (412)
Q Consensus 400 ~~~~frrk~ 408 (412)
.+.+.++|+
T Consensus 24 ~~~~~~~r~ 32 (45)
T TIGR03141 24 LWSLLDRRR 32 (45)
T ss_pred HHHHHHHHH
Confidence 344444444
No 90
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=30.93 E-value=50 Score=27.31 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=5.8
Q ss_pred chHHHHHHHH
Q 015133 380 IKFWQTTCGT 389 (412)
Q Consensus 380 ~gF~~v~~~~ 389 (412)
|.||.+++++
T Consensus 22 w~FWlv~~li 31 (102)
T PF11669_consen 22 WYFWLVWVLI 31 (102)
T ss_pred HHHHHHHHHH
Confidence 4577665554
No 91
>PRK13682 hypothetical protein; Provisional
Probab=30.55 E-value=47 Score=24.00 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhcccC
Q 015133 352 ANMILNAGIVVVGLFGMN 369 (412)
Q Consensus 352 ~s~i~~~~t~IaGifGMN 369 (412)
|+++|.+.++|+|+||.-
T Consensus 4 waliFliiA~iA~~lGF~ 21 (51)
T PRK13682 4 WAIIFLVIALIAAVLGFG 21 (51)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 678888999999999853
No 92
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=30.36 E-value=3.6e+02 Score=23.35 Aligned_cols=21 Identities=19% Similarity=0.533 Sum_probs=12.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 015133 231 KSRLVAINGRVQKVRDEIEHL 251 (412)
Q Consensus 231 k~~L~~l~~~v~~vre~l~~L 251 (412)
++.+..|..+|..+...+++|
T Consensus 108 ~~dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 108 RKDVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666555554
No 93
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=30.30 E-value=3.5e+02 Score=23.15 Aligned_cols=8 Identities=0% Similarity=0.173 Sum_probs=3.6
Q ss_pred HHhhcccC
Q 015133 362 VVGLFGMN 369 (412)
Q Consensus 362 IaGifGMN 369 (412)
|..|..|.
T Consensus 78 i~~f~~l~ 85 (139)
T PF01618_consen 78 IEAFQALA 85 (139)
T ss_pred HHHHHHHh
Confidence 34444444
No 94
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.21 E-value=5.2e+02 Score=30.71 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015133 225 ERVRQIKSRLVAINGRVQKVRDEIEHL 251 (412)
Q Consensus 225 ~~L~~lk~~L~~l~~~v~~vre~l~~L 251 (412)
+.+-++-..+..|++.++.+++.|..+
T Consensus 1225 ~~i~~l~~~~~~lr~~l~~~~e~L~~~ 1251 (1758)
T KOG0994|consen 1225 EDIAQLASATESLRRQLQALTEDLPQE 1251 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344455555666666666666655544
No 95
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=29.92 E-value=1.5e+02 Score=19.43 Aligned_cols=27 Identities=4% Similarity=-0.223 Sum_probs=13.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 015133 378 PTIKFWQTTCGTIGGCLALYLIAVGWG 404 (412)
Q Consensus 378 ~~~gF~~v~~~~~~~~~~l~~~~~~~f 404 (412)
-|-|-..++++..+..++.|.+.++.|
T Consensus 4 kp~Gal~vv~iLt~~ILvFWfgvf~~f 30 (34)
T PF08113_consen 4 KPKGALGVVMILTAFILVFWFGVFALF 30 (34)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceeeeHHHHHHHHHHHHHHHHHhh
Confidence 466666665554444444455544444
No 96
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=29.82 E-value=3.6e+02 Score=23.08 Aligned_cols=70 Identities=13% Similarity=0.331 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhHHH------HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH----HHhhcccCC
Q 015133 301 MLLEAYFAQIDGILQKLSDMSEYVDDTED------CINIMLDDTQNQLLQMGVLLSAANMILNAGIV----VVGLFGMNI 370 (412)
Q Consensus 301 ~LLE~Y~~~~d~~~~~l~~l~e~i~~tee------~i~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~----IaGifGMN~ 370 (412)
.++-.|-.+...+.+++..+.+..++..+ .-++..=.+|=.+++--+.+.+.|+++...+. +.+++++|+
T Consensus 14 ~ll~~~tnRl~ri~dR~R~L~~~~~~~~~~~~~~~~~el~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~~~~~ 93 (130)
T PF11026_consen 14 LLLLVLTNRLARIVDRIRQLHDELRDAPDEEERRLRRELRILRRRARLIRRAITLATLSALLVCLVILLLFLSALLSIDL 93 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 34556777777778888877766654211 12222234666666666666666666554443 445555554
No 97
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=29.80 E-value=1.1e+02 Score=22.47 Aligned_cols=29 Identities=10% Similarity=0.439 Sum_probs=12.0
Q ss_pred HHHHHhhhHHHHHHHHHHhcCCchhHHHH
Q 015133 234 LVAINGRVQKVRDEIEHLLDDDNDMAEMY 262 (412)
Q Consensus 234 L~~l~~~v~~vre~l~~Ll~~d~dm~~m~ 262 (412)
+..+++..+.+++.++++-++=.++.++|
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433333444455
No 98
>PRK09216 rplM 50S ribosomal protein L13; Reviewed
Probab=29.48 E-value=39 Score=29.84 Aligned_cols=55 Identities=24% Similarity=0.342 Sum_probs=33.6
Q ss_pred CCCCceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCCeEEEecccce
Q 015133 23 KGMGLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRERAIVINLEHIK 88 (412)
Q Consensus 23 ~~~~~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~~Ilvnle~ir 88 (412)
.....|.|..||+.|..--.-. +.+... |+ .=-| .|.|.+.+=+..||||-+.|.
T Consensus 8 ~~~~~~~W~viDA~~~~lGRlA--s~IAk~-------L~GKhKp--~y~p~~d~Gd~VvViNa~ki~ 63 (144)
T PRK09216 8 PAEVERKWYVIDAEGKVLGRLA--SEVASI-------LRGKHKP--TFTPHVDTGDFVIVINAEKVK 63 (144)
T ss_pred hhhcCCCEEEEeCCCCchHHHH--HHHHHH-------HhccCCC--CcCCCCCCCCEEEEEeCceeE
Confidence 3345789999999887432101 122221 11 1113 677789999999999988653
No 99
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=29.22 E-value=9.8e+02 Score=27.98 Aligned_cols=63 Identities=29% Similarity=0.457 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCchhHHHHH
Q 015133 195 RCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHLLDDDNDMAEMYL 263 (412)
Q Consensus 195 ~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~~d~dm~~m~L 263 (412)
.+|+-+++.++..+..+-.+++.+. +.++++|++|..++..+..+|...+++++.-.. +++|.
T Consensus 173 ~hL~velAdle~kir~LrqElEEK~-----enll~lr~eLddleae~~klrqe~~e~l~ea~r-a~~yr 235 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELEEKF-----ENLLRLRNELDDLEAEISKLRQEIEEFLDEAHR-ADRYR 235 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhh
Confidence 4455555556666555555555543 678899999999999999999999999965443 24453
No 100
>PF08196 UL2: UL2 protein; InterPro: IPR013269 This entry contains Orf UL2 of Human cytomegalovirus (HHV-5) (Human herpesvirus 5), which is a short protein of unknown function [].
Probab=29.21 E-value=83 Score=22.75 Aligned_cols=34 Identities=6% Similarity=-0.177 Sum_probs=21.3
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015133 372 ITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKK 406 (412)
Q Consensus 372 ~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frr 406 (412)
..|..+.+|||-..-+ +..+++++|.++|+-+-|
T Consensus 23 tlpashaqygfrllrg-if~itlviwt~vwlkllr 56 (60)
T PF08196_consen 23 TLPASHAQYGFRLLRG-IFLITLVIWTVVWLKLLR 56 (60)
T ss_pred ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3454566788776554 455677777777665544
No 101
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=29.01 E-value=2.4e+02 Score=26.05 Aligned_cols=19 Identities=16% Similarity=0.387 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 015133 349 LSAANMILNAGIVVVGLFG 367 (412)
Q Consensus 349 LTi~s~i~~~~t~IaGifG 367 (412)
+-..-+.+++.+++.|+.+
T Consensus 83 ld~~L~~~~if~~~~gi~~ 101 (206)
T PF06570_consen 83 LDNSLLFFGIFSLLFGIMG 101 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344555555555554
No 102
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=28.62 E-value=2.1e+02 Score=28.13 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 015133 348 LLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIA 400 (412)
Q Consensus 348 ~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~ 400 (412)
.+|.+|++++...+. ++|. .+ -.+.++..+.++++.....++++.
T Consensus 232 l~TslTTl~~~l~L~--~~g~----~~--i~~fa~~l~~Gli~~~~~sl~i~p 276 (289)
T PRK13022 232 IITSLTTLLVVLALY--LFGG----GT--LHDFALALLIGIIVGTYSSIFVAS 276 (289)
T ss_pred HHHHHHHHHHHHHHH--Hhcc----hh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777766655554 3342 11 244566666655544334444443
No 103
>PRK08456 flagellar motor protein MotA; Validated
Probab=28.52 E-value=1.3e+02 Score=29.13 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhc--ccCCCCCCCCCCCchHHHHHHHHHHHH
Q 015133 349 LSAANMILNAGIVVVGLF--GMNIHITLFDAPTIKFWQTTCGTIGGC 393 (412)
Q Consensus 349 LTi~s~i~~~~t~IaGif--GMN~~~~pe~~~~~gF~~v~~~~~~~~ 393 (412)
.|++.++++.+.++.|++ |=|+...+ ++.++.+|++++++++
T Consensus 4 ~tiiG~~~~~~~i~~~~~~~gg~~~~~~---~~~~~~IV~Ggt~~a~ 47 (257)
T PRK08456 4 STILGMVLAVASISVGDILEGGNPLHVI---HLSSFIIVVPTALFAA 47 (257)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHh---hHhHHHHHHHHHHHHH
Confidence 678888888888888865 55554322 4677888888766544
No 104
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=28.43 E-value=81 Score=30.12 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=23.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015133 377 APTIKFWQTTCGTIGGCLALYLIAVGWGKKKIM 409 (412)
Q Consensus 377 ~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~w 409 (412)
......|+.+++|+++..++.-.++-|+|-|||
T Consensus 189 ~~~~~~wla~~Lm~~G~fI~irsi~dY~rVKR~ 221 (233)
T PF10176_consen 189 ASQSNPWLAYILMAFGWFIFIRSIIDYWRVKRM 221 (233)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666766666666778888888886
No 105
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=27.77 E-value=6.1e+02 Score=25.17 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=10.8
Q ss_pred hhhhhHHhcCCCchh
Q 015133 45 GKHVIMRRTGLPARD 59 (412)
Q Consensus 45 ~k~~l~~~~gL~~RD 59 (412)
+=.+.+...||+.-|
T Consensus 15 sL~~FL~~~~I~F~d 29 (325)
T PF08317_consen 15 SLQDFLNMTGIRFYD 29 (325)
T ss_pred CHHHHHHHhCceeCC
Confidence 335788888999843
No 106
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=27.71 E-value=2.3e+02 Score=23.96 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCCC
Q 015133 352 ANMILNAGIVVVGLFGMNIHITL 374 (412)
Q Consensus 352 ~s~i~~~~t~IaGifGMN~~~~p 374 (412)
++..++++..+..++-++..++|
T Consensus 50 ~~~alav~lai~~M~~~~~~HPP 72 (120)
T PF04982_consen 50 WAAALAVGLAIVLMVLTRTVHPP 72 (120)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCc
Confidence 55566667777777777777877
No 107
>TIGR01066 rplM_bact ribosomal protein L13, bacterial type. This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts.
Probab=27.21 E-value=48 Score=29.09 Aligned_cols=57 Identities=30% Similarity=0.426 Sum_probs=34.8
Q ss_pred CCceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCCeEEEecccceeeeecC
Q 015133 25 MGLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRERAIVINLEHIKAIVTAK 94 (412)
Q Consensus 25 ~~~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~~Ilvnle~ir~II~~d 94 (412)
...|.|..||+.|..--.-. +.+.+. |+ .=-| .+.|.+.+=+..||||-+.+ +++.+
T Consensus 8 ~~~r~W~viDA~~~~lGRLA--s~iAk~-------L~GKhKp--~y~p~~d~Gd~VvViNa~ki--~~tG~ 65 (140)
T TIGR01066 8 DKKRKWYVVDAAGKTLGRLA--SEVARL-------LRGKHKP--TYTPHVDCGDYVIVINAEKV--RLTGK 65 (140)
T ss_pred hhcccEEEEeCCCCchHHHH--HHHHHH-------HhccCCC--ccCCCccCCCEEEEEeccEE--EEeCc
Confidence 34789999999887432101 112221 11 1113 67778999999999998875 45544
No 108
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=27.21 E-value=1.3e+02 Score=21.21 Aligned_cols=11 Identities=36% Similarity=0.703 Sum_probs=7.4
Q ss_pred HHHHHHhhccc
Q 015133 358 AGIVVVGLFGM 368 (412)
Q Consensus 358 ~~t~IaGifGM 368 (412)
++.++++.+|+
T Consensus 10 vGg~l~~~lg~ 20 (48)
T PF04226_consen 10 VGGWLFGLLGI 20 (48)
T ss_pred HHHHHHHHhcc
Confidence 46666777777
No 109
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=27.08 E-value=2.4e+02 Score=25.32 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhcccCC
Q 015133 352 ANMILNAGIVVVGLFGMNI 370 (412)
Q Consensus 352 ~s~i~~~~t~IaGifGMN~ 370 (412)
.+..+....+.+|+.+-=+
T Consensus 24 ~~~l~Ll~av~~~~~~~~~ 42 (161)
T COG3402 24 PIALVLLIAVAAGVLLYFV 42 (161)
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 3444444555555555444
No 110
>PRK10189 MATE family multidrug exporter; Provisional
Probab=27.08 E-value=1.8e+02 Score=30.47 Aligned_cols=31 Identities=6% Similarity=-0.297 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 015133 381 KFWQTTCGTIGGCLALYLIAVGWGKKKIMLS 411 (412)
Q Consensus 381 gF~~v~~~~~~~~~~l~~~~~~~frrk~wl~ 411 (412)
|...++.++.+..++..++.+++||+.+|..
T Consensus 436 g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 436 GVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 3334444443444455566788889999954
No 111
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.79 E-value=1.2e+02 Score=27.41 Aligned_cols=39 Identities=13% Similarity=0.423 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhcCCchhHHH
Q 015133 223 NLERVRQIKSRLVAINGRV---QKVRDEIEHLLDDDNDMAEM 261 (412)
Q Consensus 223 ~L~~L~~lk~~L~~l~~~v---~~vre~l~~Ll~~d~dm~~m 261 (412)
.|.+|+.+|+.|..|.... -.+++.|+++|.+++.+..+
T Consensus 116 ~L~kLLeaR~~L~~L~~~ldg~~~~e~~l~~lL~n~~~l~~L 157 (169)
T COG3516 116 ELKKLLEARTALADLKGPLDGNPAFEELLQDLLKNEELLQKL 157 (169)
T ss_pred HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHcCHHHHHHH
Confidence 4677888888888888876 56899999999988765543
No 112
>PF06417 DUF1077: Protein of unknown function (DUF1077); InterPro: IPR009445 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=26.57 E-value=1.5e+02 Score=25.45 Aligned_cols=65 Identities=11% Similarity=0.000 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCC----chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 015133 348 LLSAANMILNAGIVVVGLFGMNIHITLFDAPT----IKFWQTTCGTIGGCLALYLIAVGWGKKKIMLST 412 (412)
Q Consensus 348 ~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~----~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl~~ 412 (412)
+++|..++.++-.-|-++|++|=..-+.++.. .-++..-++-+++.++...+.+|-+..-|+|.|
T Consensus 43 IFsIm~v~m~~~~Pikai~~~~~~F~~~~~~~~~~~~~~~~~kl~yvl~ql~~l~~gl~K~~~MGLLPt 111 (124)
T PF06417_consen 43 IFSIMMVGMLLWNPIKAIFSVNQAFKPFEGDSNDNRSQLLLQKLVYVLCQLLGLALGLYKCNSMGLLPT 111 (124)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHccCCCC
Confidence 37888888888888999999996544433331 123332222223344443444555566665543
No 113
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=26.35 E-value=64 Score=31.53 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhc--cc--CCCCCCCCCCCchHHHHHHHHHHHH
Q 015133 349 LSAANMILNAGIVVVGLF--GM--NIHITLFDAPTIKFWQTTCGTIGGC 393 (412)
Q Consensus 349 LTi~s~i~~~~t~IaGif--GM--N~~~~pe~~~~~gF~~v~~~~~~~~ 393 (412)
.|++.++++...+++|++ |. |+...+ ++.++.+|+++++++.
T Consensus 7 ~t~iGii~g~~~i~~~i~~gg~~~~~~~~~---~~~s~lIV~GGt~~a~ 52 (271)
T PRK06926 7 LTPVGIFLGITIVVLGVISNSGLSGFLSFI---DLTSILIVTGGLCAAL 52 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchhHHHh---hHhHHHHHHHHHHHHH
Confidence 577888888888887776 34 343222 4567777777765443
No 114
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=26.35 E-value=1.9e+02 Score=27.41 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=8.0
Q ss_pred chHHHHHHHHHHH
Q 015133 380 IKFWQTTCGTIGG 392 (412)
Q Consensus 380 ~gF~~v~~~~~~~ 392 (412)
|.||.++++++++
T Consensus 52 ~~~~~i~gi~~g~ 64 (224)
T PF13829_consen 52 WWYWLIIGILLGL 64 (224)
T ss_pred HHHHHHHHHHHHH
Confidence 4677777765433
No 115
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=26.23 E-value=9.6e+02 Score=26.90 Aligned_cols=73 Identities=10% Similarity=0.132 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCchh
Q 015133 181 FEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHLLDDDNDM 258 (412)
Q Consensus 181 FEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~~d~dm 258 (412)
|..++.+.+-++|+...+..-..++..+..+-.. ....+++|..++.+...++.....+.+-++++.+..+.+
T Consensus 540 lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~-----~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L 612 (717)
T PF10168_consen 540 LLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQ-----KEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKL 612 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444344444444332222 235677888888888888888888888888887665544
No 116
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=26.13 E-value=3.9e+02 Score=26.82 Aligned_cols=28 Identities=11% Similarity=0.312 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 015133 225 ERVRQIKSRLVAINGRVQKVRDEIEHLL 252 (412)
Q Consensus 225 ~~L~~lk~~L~~l~~~v~~vre~l~~Ll 252 (412)
..|..+-++|.+|+++++.++..|.++.
T Consensus 289 sElDe~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 289 SELDEAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555688888888888888877765
No 117
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=26.11 E-value=1.2e+02 Score=27.77 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhcccC
Q 015133 350 SAANMILNAGIVVVGLFGMN 369 (412)
Q Consensus 350 Ti~s~i~~~~t~IaGifGMN 369 (412)
+++++.++..++++++||.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (199)
T PF10112_consen 11 WILGVLIAAITFLVSFFGFD 30 (199)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45566666677777777755
No 118
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=26.02 E-value=6.2e+02 Score=24.64 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015133 186 LESCLESACRCLDSETRTLEEEAY 209 (412)
Q Consensus 186 LE~il~~~~~~Le~~~~~le~~~~ 209 (412)
|+-.+-...+.++.++......+.
T Consensus 3 L~~a~~~t~~~i~~eL~~~~~l~~ 26 (281)
T PF12018_consen 3 LQEAIPATTEHIDTELEEAQELCY 26 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555544444443
No 119
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=25.83 E-value=3.7e+02 Score=30.79 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 015133 348 LLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIA 400 (412)
Q Consensus 348 ~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~ 400 (412)
.+|.+|++++...+.. ||. + .-.+.++..+.++++.....+|++.
T Consensus 777 i~TslTTll~llpL~l--~G~-----~-~i~~fai~li~Gli~gt~sSifvAs 821 (855)
T PRK14726 777 VLTSATTLLALLALYL--FGG-----E-VIRSFTFAMLFGVAVGTFSSIYIAA 821 (855)
T ss_pred HHHHHHHHHHHHHHHH--hcc-----h-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777776666553 351 2 2345666666666554333444443
No 120
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=25.70 E-value=42 Score=26.11 Aligned_cols=21 Identities=19% Similarity=0.059 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 015133 388 GTIGGCLALYLIAVGWGKKKI 408 (412)
Q Consensus 388 ~~~~~~~~l~~~~~~~frrk~ 408 (412)
+..++|++..+..++.|||||
T Consensus 38 l~L~LCiLvl~yai~~fkrkG 58 (74)
T PF11857_consen 38 LVLLLCILVLIYAIFQFKRKG 58 (74)
T ss_pred HHHHHHHHHHHHHhheeeecC
Confidence 444556666666777799987
No 121
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=25.67 E-value=69 Score=35.82 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015133 349 LSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFW-QTTCGTIGGCLALYLIAVGWGKKKIM 409 (412)
Q Consensus 349 LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~-~v~~~~~~~~~~l~~~~~~~frrk~w 409 (412)
|+=|.+++.|++- | +|+|-..-. ......|. .|+++++++.++++.++++|+|||.|
T Consensus 245 LGYWiAA~~P~~~--G-~~~~~~~Di-~~YHT~fLl~ILG~~~livl~lL~vLl~yCrrkc~ 302 (807)
T PF10577_consen 245 LGYWIAAMSPSSS--G-PVVSTGSDI-TTYHTVFLLAILGGTALIVLILLCVLLCYCRRKCL 302 (807)
T ss_pred cchhhhccCcccc--C-cccccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 6666666655542 2 233321111 11122443 34455666666666777888999876
No 122
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.64 E-value=6.6e+02 Score=24.78 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHH
Q 015133 304 EAYFAQIDGILQKLSDMSEYVDDTE 328 (412)
Q Consensus 304 E~Y~~~~d~~~~~l~~l~e~i~~te 328 (412)
..||.|+.-=-.+++.|...++.++
T Consensus 148 QKYFvDINiQN~KLEsLLqsMElAq 172 (305)
T PF15290_consen 148 QKYFVDINIQNKKLESLLQSMELAQ 172 (305)
T ss_pred HHHHhhhhhhHhHHHHHHHHHHHHH
Confidence 5788887666667777776666554
No 123
>PF06238 Borrelia_lipo_2: Borrelia burgdorferi BBR25 lipoprotein; InterPro: IPR009358 This entry consists of a number of lipoproteins conserved in Borrelia species [].
Probab=25.39 E-value=1.7e+02 Score=24.17 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHH-HHHHHhHHHHHHHHHh
Q 015133 307 FAQIDGILQKLSDMSEYVDDTED-CINIMLDDTQNQLLQM 345 (412)
Q Consensus 307 ~~~~d~~~~~l~~l~e~i~~tee-~i~~~Ld~~rN~lmk~ 345 (412)
|.+++++....-.+.+.+.+-.+ -+-..|-.+||++|+-
T Consensus 61 l~eIq~Ilk~nieiIeai~~~k~~~iIs~LkakRNkiMke 100 (111)
T PF06238_consen 61 LEEIQDILKYNIEIIEAISTDKNKRIISSLKAKRNKIMKE 100 (111)
T ss_pred HHHHHHHHHHHHHHHHHHccchhhhHHHHHHHHHHHHHHH
Confidence 44555555555555555554333 3556788999999983
No 124
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=25.17 E-value=2.9e+02 Score=24.74 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHhH---HHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCC
Q 015133 308 AQIDGILQKLSDMSEYVDDTEDCINIMLD---DTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNI 370 (412)
Q Consensus 308 ~~~d~~~~~l~~l~e~i~~tee~i~~~Ld---~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~ 370 (412)
..+.++.++++.+.+.+...-|-+...++ -..-.+.-+-+.+..+.+.+.|.-+++-++|.|.
T Consensus 62 drlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~ 127 (156)
T PF08372_consen 62 DRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYK 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45666677777777776666666665553 2333333332233333444555555544444443
No 125
>PF11677 DUF3273: Protein of unknown function (DUF3273); InterPro: IPR021691 Some members in this family of proteins are annotated as multi-transmembrane proteins however this cannot be confirmed. Currently this family has no known function.
Probab=24.82 E-value=3e+02 Score=26.76 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=26.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH----hhcccCCCCCCC
Q 015133 340 NQLLQMGVLLSAANMILNAGIVVV----GLFGMNIHITLF 375 (412)
Q Consensus 340 N~lmk~~l~LTi~s~i~~~~t~Ia----GifGMN~~~~pe 375 (412)
|..+|+...|-.+++++...+..+ |+|.-|+...||
T Consensus 21 ~~~LR~Gf~lq~~~~~ll~i~y~a~Gg~glf~Fdl~~~pe 60 (265)
T PF11677_consen 21 SYNLRLGFLLQLLSLILLFISYWAFGGLGLFSFDLHALPE 60 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEEcccCCc
Confidence 445666666777777766666555 899999999997
No 126
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=24.63 E-value=2.3e+02 Score=24.59 Aligned_cols=28 Identities=14% Similarity=-0.078 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015133 381 KFWQTTCGTIGGCLALYLIAVGWGKKKI 408 (412)
Q Consensus 381 gF~~v~~~~~~~~~~l~~~~~~~frrk~ 408 (412)
|.|.|...+++-.++++.++..++|+.+
T Consensus 34 GaW~Vl~F~glev~~l~~a~~~~~r~~~ 61 (140)
T PF10003_consen 34 GAWPVLPFAGLEVLALWYAFRRNYRHAR 61 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 4566666655556677777777777654
No 127
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=24.29 E-value=1.5e+02 Score=24.19 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhh-HHHHHHHHHHHHHHH
Q 015133 182 EFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLN-LERVRQIKSRLVAIN 238 (412)
Q Consensus 182 El~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~-L~~L~~lk~~L~~l~ 238 (412)
|..+|+.+++.....=..-..++....+.+-+.+..+++... .+.+++||++.....
T Consensus 12 Ei~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~ 69 (98)
T PF04504_consen 12 EIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAV 69 (98)
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 567777777664321000001222222333333433444433 356777777654433
No 128
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=24.25 E-value=25 Score=31.37 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 015133 349 LSAANMILNAGIVVVGLFG 367 (412)
Q Consensus 349 LTi~s~i~~~~t~IaGifG 367 (412)
++++.++++...+.+|+|.
T Consensus 9 ~n~l~~l~g~~li~~g~~~ 27 (221)
T PF00335_consen 9 LNVLFLLLGLALIGVGIWL 27 (221)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555
No 129
>PRK14756 hypothetical protein; Provisional
Probab=24.23 E-value=74 Score=19.97 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 015133 346 GVLLSAANMILNAGIVVV 363 (412)
Q Consensus 346 ~l~LTi~s~i~~~~t~Ia 363 (412)
+|+++.+|++.+.+-.|+
T Consensus 4 dLK~SL~tTvvaL~~Iva 21 (29)
T PRK14756 4 DLKFSLVTTIIVLGLIVA 21 (29)
T ss_pred chhhhHHHHHHHHHHHHH
Confidence 344555555554444443
No 130
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.10 E-value=2.4e+02 Score=30.94 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=19.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhcccCCC
Q 015133 341 QLLQMGVLLSAANMILNAGIVVVGLFGMNIH 371 (412)
Q Consensus 341 ~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~ 371 (412)
++.++=+.++++|++++.. -.++||....
T Consensus 391 ~~~~il~~~gi~sii~G~l--yG~fFG~~~~ 419 (646)
T PRK05771 391 RLLKILIYLGISTIIWGLL--TGSFFGFSLP 419 (646)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhHhcCccc
Confidence 4445444677777777654 4789998875
No 131
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=23.90 E-value=1.7e+02 Score=19.87 Aligned_cols=18 Identities=11% Similarity=-0.178 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHH-HHhhcC
Q 015133 391 GGCLALYLIAVG-WGKKKI 408 (412)
Q Consensus 391 ~~~~~l~~~~~~-~frrk~ 408 (412)
++.+++.+.++. -+.+||
T Consensus 14 vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 14 VGMAIIIICMFYYACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 333444444443 344444
No 132
>PLN00205 ribisomal protein L13 family protein; Provisional
Probab=23.69 E-value=62 Score=29.93 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=37.0
Q ss_pred CCCceEEEEEcCCCCeeEEEehhhhhHHhc-CCCchhhhhhcCCCCCCceEeeeCCeEEEecccceeeeecCe
Q 015133 24 GMGLRTWLVVSESGQSRVEEVGKHVIMRRT-GLPARDLRVLDPLLSYPSSILGRERAIVINLEHIKAIVTAKE 95 (412)
Q Consensus 24 ~~~~~~w~~id~~g~~~~~~~~k~~l~~~~-gL~~RDLr~Ld~~~s~~~~I~~R~~~Ilvnle~ir~II~~d~ 95 (412)
.-.+|.|.+||+.|..--.-. +.+...+ |=| -| .|.|.+.+=+.+||||-+.| +++.+.
T Consensus 11 ~~~~r~W~VIDA~~~iLGRLA--S~IAk~L~GKh-------KP--~ytP~~D~GD~VVVINAekI--~lTG~K 70 (191)
T PLN00205 11 NLEGLRWRVFDAKGQVLGRLA--SQISTVLQGKD-------KP--TYAPNRDDGDICIVLNAKDI--SVTGRK 70 (191)
T ss_pred ccCCCcEEEEeCCCCchHHHH--HHHHHHHhccC-------CC--CcCCCcCCCCEEEEEeccEE--EEeCCh
Confidence 346899999999887432101 1222221 111 13 67788999999999999865 566553
No 133
>COG4244 Predicted membrane protein [Function unknown]
Probab=23.48 E-value=2e+02 Score=25.86 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCC
Q 015133 348 LLSAANMILNAGIVVVGLFGMNIH 371 (412)
Q Consensus 348 ~LTi~s~i~~~~t~IaGifGMN~~ 371 (412)
.....+++++..++++|+|++=+-
T Consensus 53 wn~~~a~i~~~~A~~~g~~e~lla 76 (160)
T COG4244 53 WNLFAALIAGFFAVIAGLFEFLLA 76 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 477778888888999999988764
No 134
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=23.41 E-value=9e+02 Score=25.59 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCchhHHH
Q 015133 221 TLNLERVRQIKSRLVAINGRVQKVRDEIEHLLDDDNDMAEM 261 (412)
Q Consensus 221 ~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~~d~dm~~m 261 (412)
+.+-.+++.+++++..--...+.+|-...++.++.+++-+|
T Consensus 385 k~~~~rlR~hQRkfL~AI~~fR~Vk~~qRkl~e~~nsl~d~ 425 (489)
T KOG3684|consen 385 KGDQARLRKHQRKFLQAIHQFRSVKWEQRKLSEQANSLVDL 425 (489)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 34456677777776555555667777777777776665544
No 135
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=23.02 E-value=2.2e+02 Score=29.73 Aligned_cols=50 Identities=8% Similarity=-0.045 Sum_probs=27.7
Q ss_pred HHHHHHHH--HHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015133 349 LSAANMIL--NAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKKIML 410 (412)
Q Consensus 349 LTi~s~i~--~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl 410 (412)
.++++... .|.+.+.+.|. .+ ..|.|+... +..++-.+..++++++++|-
T Consensus 395 ~~~~~~~~~~lp~~~~l~~~~----~g-----~~Gvw~~~~---~~~~~~~~~~~~~~~~~~~~ 446 (455)
T COG0534 395 ISLLSYWGFRLPLAYLLGFFF----LG-----LAGVWIGFP---LSLILRAILLLLRLRRGRWR 446 (455)
T ss_pred HHHHHHHHHHHhHHHHHhhhc----cc-----chHHHHHHH---HHHHHHHHHHHHHHHHhhhh
Confidence 44444433 56676766665 11 135554443 33444456667788888774
No 136
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=22.91 E-value=4.6e+02 Score=25.52 Aligned_cols=50 Identities=14% Similarity=0.268 Sum_probs=35.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCC-CCCC-------CCCCchHHHHHHHHH
Q 015133 338 TQNQLLQMGVLLSAANMILNAGIVVVGLFGMNIH-ITLF-------DAPTIKFWQTTCGTI 390 (412)
Q Consensus 338 ~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~-~~pe-------~~~~~gF~~v~~~~~ 390 (412)
.+-.+.+ +|.+-+++..+-+.+-|+|=|=++ .++. .+..|+||.+.-+..
T Consensus 110 s~~Si~r---~l~iT~~is~~~s~~Q~ilef~~~d~~l~~~~~~~~~hgg~~fW~~~s~~f 167 (261)
T PF10160_consen 110 SRSSIKR---TLLITGLISLADSLTQAILEFGFGDVPLFIENFDLFGHGGWGFWFISSLVF 167 (261)
T ss_pred hHHHHHH---HHHHHHHHHHHHHHHHHHheeecCcccccCCCCCcCCcCCeehHHHHHHHH
Confidence 4455666 588888888899999898877776 3332 356788888876544
No 137
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.76 E-value=3.8e+02 Score=21.01 Aligned_cols=11 Identities=36% Similarity=0.486 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 015133 202 RTLEEEAYPAL 212 (412)
Q Consensus 202 ~~le~~~~~il 212 (412)
+.+++.+.++.
T Consensus 36 ~~l~~~~~~i~ 46 (90)
T PF06103_consen 36 DTLQEQVDPIT 46 (90)
T ss_pred HHHHHhHHHHH
Confidence 33444444433
No 138
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=22.69 E-value=2.1e+02 Score=24.41 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 015133 349 LSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKKIMLST 412 (412)
Q Consensus 349 LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl~~ 412 (412)
.++.+++...+.++.-+.|+=+...- +-.|-- .++++.+..-.|++||+|+.+
T Consensus 6 valLa~C~L~G~~lGdlLG~llGV~a---NVGGVG--------iAMlLLi~~~~~l~k~G~l~~ 58 (125)
T TIGR00807 6 VALLAVCHLLGVYLGNILGMALGVKA---NVGGVG--------IAMILLIISKELLAKRGHLPQ 58 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc---ccchHH--------HHHHHHHHHHHHHHHcCCCCh
Confidence 45566777778888888887764322 112211 122333556788999999863
No 139
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=22.62 E-value=5.5e+02 Score=22.85 Aligned_cols=36 Identities=6% Similarity=0.082 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Q 015133 297 EELEMLLEAYFAQIDGILQKLSDMSEYVDDTEDCIN 332 (412)
Q Consensus 297 eEvE~LLE~Y~~~~d~~~~~l~~l~e~i~~tee~i~ 332 (412)
+..+.-++.|-.+.+.+-.+.+.+....+..+...+
T Consensus 69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d 104 (157)
T PF14235_consen 69 AAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESD 104 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344444567777777777777777777666655433
No 140
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=22.58 E-value=9.9e+02 Score=25.79 Aligned_cols=18 Identities=6% Similarity=0.265 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 015133 222 LNLERVRQIKSRLVAING 239 (412)
Q Consensus 222 ~~L~~L~~lk~~L~~l~~ 239 (412)
+..+++.++.+.+..+++
T Consensus 363 ~~~~~i~~~e~~vd~~~~ 380 (533)
T COG1283 363 KKVKEIRKLEDAVDRLYE 380 (533)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444333333333
No 141
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=22.39 E-value=4.4e+02 Score=27.14 Aligned_cols=56 Identities=14% Similarity=0.288 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 015133 193 ACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEH 250 (412)
Q Consensus 193 ~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~ 250 (412)
+...++.++..++..+..+.+.+.... ..-.++..+++++..+++++..+.+.+..
T Consensus 243 ~~~~l~~~~~~~~~~i~~l~~~l~~~~--k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 243 YLESLQEKLEKLEKEIEKLEEKLEKNP--KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566666667777666666665543 33345666777777777777766665443
No 142
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=22.25 E-value=5.5e+02 Score=22.72 Aligned_cols=35 Identities=29% Similarity=0.557 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Q 015133 298 ELEMLLEAYFAQIDGILQKLSDMSEYVDDTEDCIN 332 (412)
Q Consensus 298 EvE~LLE~Y~~~~d~~~~~l~~l~e~i~~tee~i~ 332 (412)
.+|.++..++++++++....+.+++.++.+++...
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLR 77 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888999999999999999888888776544
No 143
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=22.16 E-value=3.4e+02 Score=22.74 Aligned_cols=42 Identities=7% Similarity=-0.152 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHH
Q 015133 347 VLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCG 388 (412)
Q Consensus 347 l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~ 388 (412)
..+.+++++++...++++++--|-...+...+.+++..++.+
T Consensus 39 ~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~ 80 (137)
T PF03188_consen 39 WILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATF 80 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHH
Confidence 356677777777777777775555333323455555554443
No 144
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=22.06 E-value=3.1e+02 Score=21.68 Aligned_cols=43 Identities=23% Similarity=0.466 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCchhHHHHHHH
Q 015133 222 LNLERVRQIKSRLVAINGRVQKVRDEIEHLLDDDNDMAEMYLTE 265 (412)
Q Consensus 222 ~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~~d~dm~~m~Lt~ 265 (412)
.-+.++..|+..|..|-.+|..|++..+.|- .+..+...|+..
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~-~EN~~Lq~YI~n 62 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLE-SENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3456778899999999999999999988875 566666667654
No 145
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=21.68 E-value=1.9e+02 Score=31.37 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhhcccCCC
Q 015133 349 LSAANMILNAGIVVVGLFGMNIH 371 (412)
Q Consensus 349 LTi~s~i~~~~t~IaGifGMN~~ 371 (412)
+..++++++..+++..+||+|+.
T Consensus 273 ~~a~~~~l~~~~~~~s~~Gt~~~ 295 (571)
T PRK10369 273 FRHWSLLLAIVTLILSLLGTLIV 295 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 56778888888999999999963
No 146
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.64 E-value=9e+02 Score=24.95 Aligned_cols=26 Identities=4% Similarity=-0.070 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCC
Q 015133 349 LSAANMILNAGIVVVGLFGMNIHITL 374 (412)
Q Consensus 349 LTi~s~i~~~~t~IaGifGMN~~~~p 374 (412)
+.++-+++.+|.|..-+=|||-+.|.
T Consensus 176 v~~~Ll~~VvP~f~~if~~~~~~LP~ 201 (397)
T COG1459 176 VVLFLLIFVVPQFAEIFESLGAELPA 201 (397)
T ss_pred HHHHHHHHHhccHHHHHhhcCCCCcH
Confidence 34444455566665555556665544
No 147
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=21.60 E-value=6.7e+02 Score=23.46 Aligned_cols=38 Identities=11% Similarity=0.297 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCchhHH
Q 015133 223 NLERVRQIKSRLVAINGRVQKVRDEIEHLLDDDNDMAE 260 (412)
Q Consensus 223 ~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~~d~dm~~ 260 (412)
....|..+.+....+.++...++++++.+..+++.+..
T Consensus 81 ~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk 118 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKK 118 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45677888889999999999999999999988887644
No 148
>PF02392 Ycf4: Ycf4; InterPro: IPR003359 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA (IPR005137 from INTERPRO) [], Ycf3 [, ], and Ycf4 []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. ; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009579 thylakoid, 0016021 integral to membrane
Probab=21.48 E-value=3e+02 Score=25.26 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCC
Q 015133 348 LLSAANMILNAGIVVVGLFGMNIHIT 373 (412)
Q Consensus 348 ~LTi~s~i~~~~t~IaGifGMN~~~~ 373 (412)
++.+.+++|. .+-+.+.||+|+-..
T Consensus 24 ii~~G~lGFl-l~G~sSYl~~nll~~ 48 (180)
T PF02392_consen 24 IIFLGGLGFL-LVGISSYLGKNLLPF 48 (180)
T ss_pred HHHHhhHHHH-HhHHHHHhCCCcccc
Confidence 5666666665 344678999998543
No 149
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=21.45 E-value=2.9e+02 Score=26.26 Aligned_cols=9 Identities=0% Similarity=-0.027 Sum_probs=4.1
Q ss_pred chHHHHHHH
Q 015133 380 IKFWQTTCG 388 (412)
Q Consensus 380 ~gF~~v~~~ 388 (412)
.+.+++.++
T Consensus 221 ~~~~~~~~~ 229 (248)
T PF07787_consen 221 FGLFLVAFI 229 (248)
T ss_pred hHHHHHHHH
Confidence 444444443
No 150
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.41 E-value=3.5e+02 Score=25.81 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 015133 197 LDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHLL 252 (412)
Q Consensus 197 Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll 252 (412)
++.+++.++.....+++-+.+ ...++.+..+.++|.+++..+..++..+..|-
T Consensus 137 ~~arl~~l~~~~~rl~~ll~k---a~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 137 LEARLKNLEAEEERLLELLEK---AKTVEDLLEIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554444442 33678888888888888888877777666554
No 151
>PRK02870 heat shock protein HtpX; Provisional
Probab=21.40 E-value=3.5e+02 Score=27.29 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=14.9
Q ss_pred HHHHHHhhHHHHHHHHHH-HHHHHHHhhcc
Q 015133 339 QNQLLQMGVLLSAANMIL-NAGIVVVGLFG 367 (412)
Q Consensus 339 rN~lmk~~l~LTi~s~i~-~~~t~IaGifG 367 (412)
+|.+ |.-+.+...++++ .++.++.|+||
T Consensus 19 ~n~~-kt~~l~~~~~~l~~~~g~~~~~~~~ 47 (336)
T PRK02870 19 RNRL-KTRAVIATYLAIFLFIGLLVDAIRI 47 (336)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4433 3333444444444 45667777787
No 152
>PRK09110 flagellar motor protein MotA; Validated
Probab=21.37 E-value=1.2e+02 Score=29.89 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhc--ccCCCCCCCCCCCchHHHHHHHHHHH
Q 015133 349 LSAANMILNAGIVVVGLF--GMNIHITLFDAPTIKFWQTTCGTIGG 392 (412)
Q Consensus 349 LTi~s~i~~~~t~IaGif--GMN~~~~pe~~~~~gF~~v~~~~~~~ 392 (412)
+|++.++++.+.+++|++ |=|+...+ ++.++.+|+++++++
T Consensus 2 ~tliGli~~~~~i~~g~~l~gg~~~~l~---~~~~~lIV~Ggtlga 44 (283)
T PRK09110 2 LIIIGYIVVLGSVFGGYLLAGGHLGALI---QPAELLIIGGAALGA 44 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCChhHhh---chhHHHHHHHhHHHH
Confidence 678888888888888877 44554333 467888888876544
No 153
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=21.29 E-value=1.8e+02 Score=18.32 Aligned_cols=15 Identities=7% Similarity=-0.013 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 015133 382 FWQTTCGTIGGCLAL 396 (412)
Q Consensus 382 F~~v~~~~~~~~~~l 396 (412)
|-+++++..++++.+
T Consensus 4 faWilG~~lA~~~~i 18 (28)
T PF08173_consen 4 FAWILGVLLACAFGI 18 (28)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555444333333
No 154
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=21.25 E-value=5e+02 Score=21.83 Aligned_cols=58 Identities=14% Similarity=0.300 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015133 193 ACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHL 251 (412)
Q Consensus 193 ~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~L 251 (412)
-...|.++++++++.+..-+|.-... ....-.++-.+-.++..++..+..+++-+.++
T Consensus 9 q~~~l~~~v~~lRed~r~SEdrsa~S-Ra~mhrRlDElV~Rv~~lEs~~~~lk~dVsem 66 (112)
T PF07439_consen 9 QLGTLNAEVKELREDIRRSEDRSAAS-RASMHRRLDELVERVTTLESSVSTLKADVSEM 66 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence 34445555555555554444332211 11223445556666666666666655554443
No 155
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.25 E-value=2.2e+02 Score=30.07 Aligned_cols=26 Identities=19% Similarity=0.140 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCC
Q 015133 348 LLSAANMILNAGIVVVGLFGMNIHIT 373 (412)
Q Consensus 348 ~LTi~s~i~~~~t~IaGifGMN~~~~ 373 (412)
++.|+.++..|++++.|++|=|-...
T Consensus 402 v~~iw~fv~~PL~~~G~i~GkN~~~~ 427 (593)
T KOG1277|consen 402 VLLIWLFVISPLTVLGGIAGKNRSGE 427 (593)
T ss_pred HHHHHHHHhchHHHcccccccccccC
Confidence 69999999999999999999997543
No 156
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=21.19 E-value=5.1e+02 Score=29.52 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=20.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHH
Q 015133 177 KVLAFEFRALESCLESACRCLDSE 200 (412)
Q Consensus 177 ~~lpFEl~~LE~il~~~~~~Le~~ 200 (412)
--.|++-++|+++++.+.-.+|+.
T Consensus 618 ll~p~~~rlL~a~~~q~AlAler~ 641 (890)
T COG2205 618 LLAPEQRRLLDAVLTQIALALERV 641 (890)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999999988863
No 157
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=21.03 E-value=60 Score=32.07 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=13.4
Q ss_pred CCCCceEEEEEcCCCCeeEE
Q 015133 23 KGMGLRTWLVVSESGQSRVE 42 (412)
Q Consensus 23 ~~~~~~~w~~id~~g~~~~~ 42 (412)
..+...+|-+-|++|.+-..
T Consensus 104 ~~p~~g~y~V~~~n~~Cila 123 (306)
T PF01299_consen 104 PSPSVGTYSVTNGNGTCILA 123 (306)
T ss_pred CCCccceEEEECCCceEEEE
Confidence 44567778877777766554
No 158
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=20.93 E-value=2.4e+02 Score=30.28 Aligned_cols=73 Identities=21% Similarity=0.183 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHh----HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc--cCC
Q 015133 297 EELEMLLEAYFAQIDGILQKLSDMSEYVDDTEDCINIML----DDTQNQLLQMGVLLSAANMILNAGIVVVGLFG--MNI 370 (412)
Q Consensus 297 eEvE~LLE~Y~~~~d~~~~~l~~l~e~i~~tee~i~~~L----d~~rN~lmk~~l~LTi~s~i~~~~t~IaGifG--MN~ 370 (412)
+-+|+=|.+.+++.+.+-.+-..|+.+++.++.- |-.+ -..||+-- .-.+.+|+..++||+-.|| ||+
T Consensus 305 ~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E-n~~~kvpsp~~~~qKk-----~Rkvvaimv~maFi~f~~~~p~ni 378 (655)
T KOG4343|consen 305 LGLEARLQALLSENEQLKKENATLKRQLDELVSE-NQRLKVPSPKGRNQKK-----KRKVVAIMVVMAFIIFNYGSPMNI 378 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc-CcccccCCCccccccc-----chhhhhHHHHHHHHHHhccCcccc
Confidence 3455555666667777776667777666654320 1111 12344322 2345566667788888898 999
Q ss_pred CCCCC
Q 015133 371 HITLF 375 (412)
Q Consensus 371 ~~~pe 375 (412)
.+.++
T Consensus 379 ~nnln 383 (655)
T KOG4343|consen 379 LNNLN 383 (655)
T ss_pred cCCcc
Confidence 88774
No 159
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=20.91 E-value=2.5e+02 Score=32.34 Aligned_cols=9 Identities=0% Similarity=-0.079 Sum_probs=5.8
Q ss_pred HHHhh-cCCC
Q 015133 402 GWGKK-KIML 410 (412)
Q Consensus 402 ~~frr-k~wl 410 (412)
+|+|| |+||
T Consensus 894 ~~~r~~~~~~ 903 (903)
T PRK15122 894 FYIRRFGQWF 903 (903)
T ss_pred HHhhhccccC
Confidence 45665 7776
No 160
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=20.73 E-value=2e+02 Score=31.31 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhcccCC
Q 015133 349 LSAANMILNAGIVVVGLFGMNI 370 (412)
Q Consensus 349 LTi~s~i~~~~t~IaGifGMN~ 370 (412)
+..++.+++..+++..+||+|+
T Consensus 219 ~~a~~~~l~~~~~~~~~~gt~~ 240 (576)
T TIGR00353 219 FKAWTLLLAILAFSLSLLGTFI 240 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888899999999997
No 161
>PRK14762 membrane protein; Provisional
Probab=20.71 E-value=1e+02 Score=18.88 Aligned_cols=20 Identities=45% Similarity=0.662 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHH-HHHhhccc
Q 015133 349 LSAANMILNAGI-VVVGLFGM 368 (412)
Q Consensus 349 LTi~s~i~~~~t-~IaGifGM 368 (412)
+=++..+|.++- .|+|+|-|
T Consensus 5 lw~i~iifligllvvtgvfkl 25 (27)
T PRK14762 5 LWAVLIIFLIGLLVVTGVFKM 25 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444332 34555544
No 162
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=20.70 E-value=96 Score=26.04 Aligned_cols=42 Identities=7% Similarity=-0.289 Sum_probs=18.9
Q ss_pred cccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015133 366 FGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKKIML 410 (412)
Q Consensus 366 fGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl 410 (412)
+=|.+...+|..-++..+.+.++. +.+-.+..-.-.++|+|+
T Consensus 27 ~ll~~~~~~e~~~~~~~~~i~~ls---~~~GG~~a~~~~~~kG~l 68 (116)
T PF12670_consen 27 LLLYFTSLSESILPWLVVIIYILS---VFIGGFYAGRKAGSKGWL 68 (116)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHccchHH
Confidence 446666666543333333332222 222222334556777775
No 163
>PF00746 Gram_pos_anchor: Gram positive anchor; InterPro: IPR019948 Viruses, parasites and bacteria are covered in protein and sugar molecules that help them gain entry into a host by counteracting the host's defences. One such molecule is the M protein produced by certain streptococcal bacteria. M proteins embody a motif that is now known to be shared by many Gram-positive bacterial surface proteins. The motif includes a conserved hexapeptide, which precedes a hydrophobic C-terminal membrane anchor, which itself precedes a cluster of basic residues [, ]. This structure is represented in the following schematic representation: +--------------------------------------------+-+--------+-+ | Variable length extracellular domain |H| Anchor |B| +--------------------------------------------+-+--------+-+ 'H': conserved hexapeptide. 'B': cluster of basic residues. It has been proposed that this hexapeptide sequence is responsible for a post- translational modification necessary for the proper anchoring of the proteins which bear it, to the cell wall.; PDB: 2XTL_B 3QDH_A 2Y1V_C 2X9X_A 3RPK_A 2X9W_A 2X9Y_A.
Probab=20.52 E-value=33 Score=22.72 Aligned_cols=10 Identities=10% Similarity=-0.210 Sum_probs=0.0
Q ss_pred HHHHHHHhhc
Q 015133 398 LIAVGWGKKK 407 (412)
Q Consensus 398 ~~~~~~frrk 407 (412)
.+.++++|||
T Consensus 30 ~~~~~~~krr 39 (39)
T PF00746_consen 30 GGGLLLVKRR 39 (39)
T ss_dssp ----------
T ss_pred HHHHHheecC
Confidence 4445555554
No 164
>PF01957 NfeD: NfeD-like C-terminal, partner-binding; InterPro: IPR002810 The nfe genes (nfeA, nfeB, and nfeD) are involved in the nodulation efficiency and competitiveness of Rhizobium meliloti (Sinorhizobium meliloti) (Rhizobium meliloti) on alfalfa roots []. The specific function of this family is unknown although it is unlikely that NfeD is specifically involved in nodulation as the family contains several different archaeal and bacterial species most of which are not symbionts. This entry describes archaeal and bacterial proteins which are variously described, examples are: nodulation protein, nodulation efficiency protein D (nfeD), hypothetical protein and membrane-bound serine protease (ClpP class). A number of these proteins are classified in MEROPS peptidase family S49 as non-peptidase homologues or as unassigned peptidases. ; PDB: 2K5H_A 3CP0_A 2EXD_A.
Probab=20.36 E-value=36 Score=28.96 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcccCCCCC
Q 015133 355 ILNAGIVVVGLFGMNIHIT 373 (412)
Q Consensus 355 i~~~~t~IaGifGMN~~~~ 373 (412)
.++..++++|+++.-....
T Consensus 24 ~~gi~~~~~g~~~~~~~~~ 42 (144)
T PF01957_consen 24 WGGIAAFIAGLLGLFFPDL 42 (144)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4455667778777776543
No 165
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=20.23 E-value=6.5e+02 Score=28.37 Aligned_cols=32 Identities=16% Similarity=0.330 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 015133 221 TLNLERVRQIKSRLVAINGRVQKVRDEIEHLL 252 (412)
Q Consensus 221 ~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll 252 (412)
++.+..+..++.+...|+.++..+++.+..+-
T Consensus 66 Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e 97 (766)
T PF10191_consen 66 PRVLREVDRLRQEAASLQEQMASVQEEIKAVE 97 (766)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34566677778888888888888887777653
No 166
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=20.10 E-value=8.9e+02 Score=26.30 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=12.7
Q ss_pred EecccceeeeecCee
Q 015133 82 INLEHIKAIVTAKEV 96 (412)
Q Consensus 82 vnle~ir~II~~d~v 96 (412)
+|+.|||+|++...-
T Consensus 256 LNT~PvKvlvg~r~e 270 (557)
T PF01763_consen 256 LNTAPVKVLVGSRSE 270 (557)
T ss_pred hcCCCeEEEEecCCc
Confidence 899999999997653
No 167
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=20.05 E-value=3.2e+02 Score=19.17 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHhHHHHHHHHH
Q 015133 308 AQIDGILQKLSDMSEYVDDTEDCINIMLDDTQNQLLQ 344 (412)
Q Consensus 308 ~~~d~~~~~l~~l~e~i~~tee~i~~~Ld~~rN~lmk 344 (412)
+|.-++...++.|...+.+|++.+++.-..- +.|+
T Consensus 2 Rq~s~L~~qL~qL~aNL~~t~~~l~~~s~Q~--~~i~ 36 (45)
T PF08227_consen 2 RQYSHLASQLAQLQANLADTENLLEMTSIQA--NSIR 36 (45)
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHH
Confidence 4566778899999999999998776543222 4555
No 168
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.00 E-value=6.4e+02 Score=26.12 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHhH
Q 015133 308 AQIDGILQKLSDMSEYVDDTEDCINIMLD 336 (412)
Q Consensus 308 ~~~d~~~~~l~~l~e~i~~tee~i~~~Ld 336 (412)
++.-++-+++..|-+.++-.+|+..+.-+
T Consensus 333 r~yleI~qRv~vLN~kl~~i~~~~~~l~e 361 (399)
T KOG2861|consen 333 RRYLEIGQRVNVLNYKLKVIEDLLDILQE 361 (399)
T ss_pred HHHcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888887777777776665443
Done!