Query 015133
Match_columns 412
No_of_seqs 223 out of 1533
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 07:16:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkg_A Magnesium transporter M 100.0 1.4E-53 5E-58 405.9 27.9 239 27-342 16-261 (261)
2 2iub_A CORA, divalent cation t 100.0 6.2E-37 2.1E-41 307.6 28.5 279 27-410 70-363 (363)
3 4ev6_A Magnesium transport pro 100.0 2.7E-36 9.3E-41 300.3 32.7 280 26-410 48-339 (339)
4 4egw_A Magnesium transport pro 99.7 5.4E-16 1.9E-20 149.8 23.5 217 26-344 48-280 (280)
5 3nvo_A Zinc transport protein 99.6 1.6E-13 5.3E-18 131.1 21.3 165 25-256 39-218 (264)
6 3ck6_A Putative membrane trans 99.6 3E-13 1E-17 128.3 21.4 201 29-343 32-252 (252)
7 2bbh_A Divalent cation transpo 99.2 7.2E-11 2.5E-15 112.8 13.5 167 27-255 61-242 (269)
8 2hn1_A CORA, magnesium and cob 99.2 1.9E-10 6.5E-15 109.8 14.4 167 26-256 65-243 (266)
9 4ev6_A Magnesium transport pro 93.3 1.5 5.1E-05 42.5 14.5 174 184-408 156-334 (339)
10 2iub_A CORA, divalent cation t 91.5 11 0.00037 36.7 19.8 174 184-408 180-358 (363)
11 1cn3_F Fragment of coat protei 85.1 0.49 1.7E-05 27.9 2.0 12 7-18 1-12 (29)
12 2i9o_A MHB8A peptide; beta-hai 72.0 1.2 4.1E-05 27.6 0.9 10 7-16 13-22 (37)
13 3v86_A De novo design helix; c 68.0 10 0.00035 21.9 4.1 25 227-251 2-26 (27)
14 2ks1_B Epidermal growth factor 63.6 11 0.00038 25.3 4.4 15 395-409 26-40 (44)
15 1nfn_A Apolipoprotein E3; lipi 62.5 81 0.0028 27.7 11.5 67 186-253 60-127 (191)
16 4egw_A Magnesium transport pro 60.4 84 0.0029 28.9 11.7 29 310-338 239-267 (280)
17 2k1k_A Ephrin type-A receptor 60.2 8.7 0.0003 25.0 3.3 7 401-407 31-37 (38)
18 2l2t_A Receptor tyrosine-prote 56.7 18 0.00061 24.3 4.4 15 395-409 25-39 (44)
19 2jwa_A Receptor tyrosine-prote 54.8 18 0.00061 24.3 4.2 18 392-409 23-40 (44)
20 3swf_A CGMP-gated cation chann 52.8 69 0.0024 23.9 7.7 45 194-246 9-53 (74)
21 3nvo_A Zinc transport protein 50.4 87 0.003 28.3 9.9 22 231-252 186-207 (264)
22 3s8f_C Cytochrome C oxidase po 48.4 32 0.0011 21.7 4.4 29 377-405 3-31 (34)
23 3r8s_J 50S ribosomal protein L 48.1 9.6 0.00033 32.3 2.5 57 21-88 6-63 (142)
24 2k21_A Potassium voltage-gated 47.2 15 0.0005 30.5 3.4 33 377-409 48-80 (138)
25 3ghg_A Fibrinogen alpha chain; 43.4 2.1E+02 0.0071 29.3 11.7 29 308-336 131-159 (562)
26 3p8c_D Wiskott-aldrich syndrom 42.4 68 0.0023 30.1 7.6 56 185-241 25-80 (279)
27 3swy_A Cyclic nucleotide-gated 39.6 83 0.0028 21.2 5.6 40 194-241 7-46 (46)
28 1txp_A HnRNP C, heterogeneous 39.1 30 0.001 20.7 2.9 24 228-251 2-25 (28)
29 1gs9_A Apolipoprotein E, APOE4 39.0 1.8E+02 0.0063 24.8 9.8 28 295-322 129-157 (165)
30 1deq_A Fibrinogen (alpha chain 38.0 2.4E+02 0.0081 27.6 10.8 18 226-243 135-152 (390)
31 2knc_A Integrin alpha-IIB; tra 37.9 29 0.00098 24.4 3.2 12 378-389 8-19 (54)
32 2k1a_A Integrin alpha-IIB; sin 36.8 67 0.0023 21.2 4.8 31 379-410 7-37 (42)
33 2ftc_H L13MT, MRP-L13, 39S rib 34.7 19 0.00066 30.7 2.3 55 27-94 15-70 (148)
34 2l8s_A Integrin alpha-1; trans 34.4 31 0.0011 24.2 2.9 7 402-408 34-40 (54)
35 3v2d_N 50S ribosomal protein L 33.0 13 0.00043 31.5 0.9 53 25-88 8-61 (140)
36 2l7b_A Apolipoprotein E, APO-E 31.4 2.2E+02 0.0075 26.9 9.4 69 186-255 68-137 (307)
37 1vcs_A Vesicle transport throu 30.9 1.8E+02 0.0062 22.7 7.4 25 221-245 70-94 (102)
38 3ck6_A Putative membrane trans 29.2 3E+02 0.01 24.4 9.8 33 309-341 211-243 (252)
39 3onj_A T-snare VTI1; helix, HA 29.0 1.8E+02 0.006 22.5 7.0 23 223-245 70-93 (97)
40 2zjr_G 50S ribosomal protein L 27.7 20 0.0007 31.3 1.3 55 26-93 37-92 (174)
41 2etd_A LEMA protein; bromodoma 25.0 3.3E+02 0.011 23.3 14.3 47 312-370 107-153 (171)
42 1iij_A ERBB-2 receptor protein 24.7 29 0.00098 22.2 1.2 11 398-408 25-35 (35)
43 4g2k_A General control protein 24.5 2.8E+02 0.0097 22.5 7.7 62 196-258 32-93 (125)
44 2klu_A T-cell surface glycopro 22.3 1.3E+02 0.0045 21.9 4.5 25 378-404 5-30 (70)
45 1nfn_A Apolipoprotein E3; lipi 21.8 3.9E+02 0.013 23.2 8.7 31 295-325 129-160 (191)
46 3trt_A Vimentin; cytoskeleton, 21.6 2.4E+02 0.0081 20.5 8.6 28 224-251 48-75 (77)
47 3szr_A Interferon-induced GTP- 21.1 2.3E+02 0.008 29.2 8.2 78 174-253 419-501 (608)
48 4dnd_A Syntaxin-10, SYN10; str 20.8 3.5E+02 0.012 22.1 9.0 63 183-248 65-128 (130)
49 3tix_A Ubiquitin-like protein 20.2 70 0.0024 28.6 3.3 39 27-65 56-103 (207)
50 3f1f_N 50S ribosomal protein L 20.0 15 0.00051 31.8 -1.1 53 25-88 31-84 (163)
No 1
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-53 Score=405.87 Aligned_cols=239 Identities=30% Similarity=0.450 Sum_probs=220.0
Q ss_pred ceEEEEEcCCCCeeEEE--ehhhhhHHhcCCCchhhhhhcCCC-CCCceEeeeCCeEEEecccceeeeecCeeEEecCCC
Q 015133 27 LRTWLVVSESGQSRVEE--VGKHVIMRRTGLPARDLRVLDPLL-SYPSSILGRERAIVINLEHIKAIVTAKEVLMLYSTN 103 (412)
Q Consensus 27 ~~~w~~id~~g~~~~~~--~~k~~l~~~~gL~~RDLr~Ld~~~-s~~~~I~~R~~~Ilvnle~ir~II~~d~vllf~~~~ 103 (412)
..+|.+||..|++...+ ++|++|++++||+|||||+|||.. +.+|+|++|++|||||++||||||++|+|++|++.+
T Consensus 16 ~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~~ 95 (261)
T 3rkg_A 16 FISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTTN 95 (261)
T ss_dssp EEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCSC
T ss_pred eEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCCC
Confidence 57899999999988865 899999999999999999999975 578899999999999999999999999999999998
Q ss_pred cchh----HHHHHHHHHhhhcccccccccccchhhhhhhhhhhccCCCCccccchhcccccCcCCCCCCCccccCCCccc
Q 015133 104 PLVV----QFVQDLQHRISSLQALSTQQAGERDEMEREDKAEANLSGPSQHTLRRRASISSNERKDDAPETSVVAGPKVL 179 (412)
Q Consensus 104 ~~~~----~f~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (412)
+.+. .|+++++.|+++++ .+.+
T Consensus 96 ~~~~~~~~~f~~~l~~~l~~~~------------------------------------------------------~~~l 121 (261)
T 3rkg_A 96 PSAAAKLSVLMYDLESKLSSTK------------------------------------------------------NNSQ 121 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSS------------------------------------------------------CCSS
T ss_pred chhhhhHHHHHHHHHHHhccCC------------------------------------------------------CCCC
Confidence 7664 58899988886431 2479
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCchhH
Q 015133 180 AFEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHLLDDDNDMA 259 (412)
Q Consensus 180 pFEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~~d~dm~ 259 (412)
||||+|||+||.++|..|++++..++..+.+++++|++++++..|++|+..+++|+.|.++++.+|++|+++|++|+||+
T Consensus 122 PFEfraLEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~ 201 (261)
T 3rkg_A 122 FYEHRALESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLA 201 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccCCCccccccccCCCCcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHhHHHH
Q 015133 260 EMYLTEKLNASKEEVSDEDDDRSENNSQNFTSFKPNVEELEMLLEAYFAQIDGILQKLSDMSEYVDDTEDCINIMLDDTQ 339 (412)
Q Consensus 260 ~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eEvE~LLE~Y~~~~d~~~~~l~~l~e~i~~tee~i~~~Ld~~r 339 (412)
.||||++. ...++|+|+|||||+||+|+|++.++++.++++|++|||++++.||++|
T Consensus 202 ~myLT~k~-----------------------~~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i~LD~~R 258 (261)
T 3rkg_A 202 NMYLTVKK-----------------------SPKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANR 258 (261)
T ss_dssp HTCCSSCC-----------------------CTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhccCCC-----------------------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999763 2356899999999999999999999999999999999999999999999
Q ss_pred HHH
Q 015133 340 NQL 342 (412)
Q Consensus 340 N~l 342 (412)
|++
T Consensus 259 N~L 261 (261)
T 3rkg_A 259 NSL 261 (261)
T ss_dssp ---
T ss_pred cCC
Confidence 985
No 2
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=100.00 E-value=6.2e-37 Score=307.57 Aligned_cols=279 Identities=16% Similarity=0.183 Sum_probs=201.3
Q ss_pred ceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCCeEE--E------------ecccceeee
Q 015133 27 LRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRERAIV--I------------NLEHIKAIV 91 (412)
Q Consensus 27 ~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~~Il--v------------nle~ir~II 91 (412)
...|+.+++-.+.+. ...|.+.||||+..++ ++++ .++|++...+++++ + ..+++..++
T Consensus 70 ~~~Wi~l~~p~~~~e----~~~l~~~f~l~~l~ied~l~~--~~rpk~e~~~~~lfivl~~~~~~~~~~~~~~~~v~~~l 143 (363)
T 2iub_A 70 TPTWINITGIHRTDV----VQRVGEFFGIHPLVLEDILNV--HQRPKVEFFENYVFIVLKMFTYDKNLHELESEQVSLIL 143 (363)
T ss_dssp SCEEEEEECTTCHHH----HHHHHHHTTCCHHHHHHHHCC--SSCCEEEEETTEEEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred CeEEEEeCCCCCHHH----HHHHHHHcCcChhHHHHHhCC--CCCCeEEEECCEEEEEEEeeeecccccccceEEEEEEE
Confidence 456888876543222 2478899999999999 8998 89999999999863 2 334688999
Q ss_pred ecCeeEEecCCCcchhHHHHHHHHHhhhcccccccccccchhhhhhhhhhhccCCCCccccchhcccccCcCCCCCCCcc
Q 015133 92 TAKEVLMLYSTNPLVVQFVQDLQHRISSLQALSTQQAGERDEMEREDKAEANLSGPSQHTLRRRASISSNERKDDAPETS 171 (412)
Q Consensus 92 ~~d~vllf~~~~~~~~~f~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (412)
+.+.+++|..... +.++.+++|+....+. .+
T Consensus 144 ~~~~liTv~~~~~---~~~~~v~~rl~~~~~~-----------------------~~----------------------- 174 (363)
T 2iub_A 144 TKNCVLMFQEKIG---DVFDPVRERIRYNRGI-----------------------IR----------------------- 174 (363)
T ss_dssp ETTEEEEEESSSC---CSCHHHHHHHHTTCTT-----------------------TT-----------------------
T ss_pred ECCEEEEEEeCCC---chHHHHHHHHHhcCCc-----------------------cc-----------------------
Confidence 9999999987642 4567788887654210 00
Q ss_pred ccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015133 172 VVAGPKVLAFEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHL 251 (412)
Q Consensus 172 ~~~~~~~lpFEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~L 251 (412)
..+++.+- +.+|+.+++.+...++ .+++.++.+++++.++..+..+++++.+|+++..+++.+++.+++++.|
T Consensus 175 -~~~~~~ll--~~lld~ivd~y~~~l~----~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L 247 (363)
T 2iub_A 175 -KKRADYLL--YSLIDALVDDYFVLLE----KIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSL 247 (363)
T ss_dssp -TSCHHHHH--HHHHHHHHHHHHHHHH----HHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHH--HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122232 3566777766666555 6888888888888776667789999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHhhhcccccCCCccccccccCCCCcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 015133 252 LDDDNDMAEMYLTEKLNASKEEVSDEDDDRSENNSQNFTSFKPNVEELEMLLEAYFAQIDGILQKLSDMSEYVDDTEDCI 331 (412)
Q Consensus 252 l~~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eEvE~LLE~Y~~~~d~~~~~l~~l~e~i~~tee~i 331 (412)
.+.+... -.++....++....++..+.+.++.+++.++.+.+.+
T Consensus 248 ~~~~~~~------------------------------------~~~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~ 291 (363)
T 2iub_A 248 YRDVPPL------------------------------------IEKETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVY 291 (363)
T ss_dssp HSCCSSS------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhccccc------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8754321 1122222333344457778888999999999999999
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015133 332 NIMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKKIML 410 (412)
Q Consensus 332 ~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl 410 (412)
.+.+++++|++|| +||++|++|+|+|||||+|||||++|||++|+||||+++++|+++ ++++++||||||||
T Consensus 292 ~s~is~~~N~imk---~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i----~~~~~~~Fkrk~Wl 363 (363)
T 2iub_A 292 LSSVSNKTNEVMK---VLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVI----AVIMVVYFKKKKWL 363 (363)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHH----HHHHHTTTTSCC--
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHH----HHHHHHHHHHcccC
Confidence 9999999999999 699999999999999999999999999999999999999887544 46789999999997
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.7e-36 Score=300.26 Aligned_cols=280 Identities=16% Similarity=0.190 Sum_probs=219.2
Q ss_pred CceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCCeEE-----------Eecccceeeeec
Q 015133 26 GLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRERAIV-----------INLEHIKAIVTA 93 (412)
Q Consensus 26 ~~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~~Il-----------vnle~ir~II~~ 93 (412)
...-|+.+..-...+ + ..|.+.||||+..++ .+|+ .++|++...+++++ +..+++..+++.
T Consensus 48 ~~~vWIdl~~Pt~~E---~--~~l~~~~~l~~~~~ed~l~~--~~rpk~e~~~~~~~iv~~~~~~~~~~~~~~v~i~l~~ 120 (339)
T 4ev6_A 48 YRLIWIDCYDPKDEE---L--YKLSKKIGISVSDLQIGLDE--QEIPRVEEDEDFYLIIYKAPLFEEDITTTSLGIYIKN 120 (339)
T ss_dssp CSCEEEEEESCCHHH---H--HHHHHHHTCCHHHHHHHHCT--TCCCEEEEETTEEEEECCCCCCTTTCCCCCCEEEEET
T ss_pred CCEEEEEeCCCCHHH---H--HHHHHHHCcCHhHHHHhhCC--ccCCeEEEECCEEEEEEecCccCCCcceEEEEEEEEC
Confidence 345698876533222 2 478999999999999 9999 89999999999865 334678899999
Q ss_pred CeeEEecCCCcchhHHHHHHHHHhhhcccccccccccchhhhhhhhhhhccCCCCccccchhcccccCcCCCCCCCcccc
Q 015133 94 KEVLMLYSTNPLVVQFVQDLQHRISSLQALSTQQAGERDEMEREDKAEANLSGPSQHTLRRRASISSNERKDDAPETSVV 173 (412)
Q Consensus 94 d~vllf~~~~~~~~~f~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (412)
+.+++++.... +.++.+++++....+. .. ..
T Consensus 121 ~~lITv~~~~~---~~~~~~~~~~~~~~~~-----------------------~~-----------------------~~ 151 (339)
T 4ev6_A 121 NLLLTIHSDKI---KAIGRLHKLISTKKPR-----------------------IV-----------------------FE 151 (339)
T ss_dssp TEEEEEESSCC---HHHHHHHHHSSSSSSC-----------------------CC-----------------------CC
T ss_pred CeeEEeecCCc---chhHHHHHHHHcCCCc-----------------------cc-----------------------cc
Confidence 99999986643 6678888887654211 00 00
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 015133 174 AGPKVLAFEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHLLD 253 (412)
Q Consensus 174 ~~~~~lpFEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~ 253 (412)
.+++.+- +.+|+.+++.+...++ .+++.++.+++.+.++.+++.++++..+|+++..+++.+.+.++++..+.+
T Consensus 152 ~~~~~ll--~~lld~ivd~~~~~l~----~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~ 225 (339)
T 4ev6_A 152 RGIGFLL--YHILNEITRSYSRILM----NLEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKR 225 (339)
T ss_dssp SCHHHHH--HHHHHHHHHHHHHHHH----HHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHH--HHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 1222233 3566666666655544 688888888888888778888999999999999999999999999999886
Q ss_pred CCchhHHHHHHHhhhcccccCCCccccccccCCCCcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH
Q 015133 254 DDNDMAEMYLTEKLNASKEEVSDEDDDRSENNSQNFTSFKPNVEELEMLLEAYFAQIDGILQKLSDMSEYVDDTEDCINI 333 (412)
Q Consensus 254 ~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eEvE~LLE~Y~~~~d~~~~~l~~l~e~i~~tee~i~~ 333 (412)
.+... ..++....++..+.++..+.+.++.+++.+..+.+.+..
T Consensus 226 ~~~~~------------------------------------~~~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s 269 (339)
T 4ev6_A 226 KYLPI------------------------------------TTKEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLS 269 (339)
T ss_dssp SCBTT------------------------------------BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc------------------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54321 112233334555566778888999999999999999999
Q ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015133 334 MLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFWQTTCGTIGGCLALYLIAVGWGKKKIML 410 (412)
Q Consensus 334 ~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl 410 (412)
.+++++|++|| +||++|++|+|+|||||+|||||++|||++|+||||+++++|+++ .+++++||||||||
T Consensus 270 ~is~~~N~~mk---~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~----~~~~~~~fkrk~WL 339 (339)
T 4ev6_A 270 LENIKMNQIMK---ILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVI----IMIFVYIFRRSGWI 339 (339)
T ss_dssp HHHHHHHHHHH---HHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHH----HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHH----HHHHHHHHHHcCCC
Confidence 99999999999 699999999999999999999999999999999999999887544 46778999999997
No 4
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=99.73 E-value=5.4e-16 Score=149.76 Aligned_cols=217 Identities=17% Similarity=0.176 Sum_probs=159.5
Q ss_pred CceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCCeEE-----------Eecccceeeeec
Q 015133 26 GLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRERAIV-----------INLEHIKAIVTA 93 (412)
Q Consensus 26 ~~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~~Il-----------vnle~ir~II~~ 93 (412)
...-|+.+.+-...+ + ..|.+.|||||..++ .+++ .++|++...+++++ +..+++.++++.
T Consensus 48 ~~~vWIdl~~Pt~eE---l--~~l~~~f~lh~l~leD~l~~--~~rpKie~~~d~~fivl~~~~~~~~~~t~~v~i~l~~ 120 (280)
T 4egw_A 48 YRLIWIDCYDPKDEE---L--YKLSKKIGISVSDLQIGLDE--QEIPRVEEDEDFYLIIYKAPLFEEDITTTSLGIYIKN 120 (280)
T ss_dssp SSCEEEEEESCCHHH---H--HHHHHHHTCCHHHHHHHTCT--TCCCEEECCSSSEEEEEEEEECSSSCEEEEEEEEEET
T ss_pred CeEEEEEeCCCCHHH---H--HHHHHHHCcCHHHHHHHhCc--ccCceEEEECCEEEEEEEeccccccceeeeEEEEEEC
Confidence 456799887643322 3 478999999999999 9999 89999999999855 345668899999
Q ss_pred CeeEEecCCCcchhHHHHHHHHHhhhcccccccccccchhhhhhhhhhhccCCCCccccchhcccccCcCCCCCCCcccc
Q 015133 94 KEVLMLYSTNPLVVQFVQDLQHRISSLQALSTQQAGERDEMEREDKAEANLSGPSQHTLRRRASISSNERKDDAPETSVV 173 (412)
Q Consensus 94 d~vllf~~~~~~~~~f~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (412)
+.+++|+.... +.++.+++|+....++ .. ..
T Consensus 121 ~~lITv~~~~~---~~~~~v~~~l~~~~~~-----------------------~~-----------------------~~ 151 (280)
T 4egw_A 121 NLLLTIHSDKI---KAIGRLHKLISTKKPR-----------------------IV-----------------------FE 151 (280)
T ss_dssp TEEEEEESSCC---HHHHHHHHHHHHSCCS-----------------------SS-----------------------CT
T ss_pred CEEEEEecCCc---chHHHHHHHHHhcCcc-----------------------cc-----------------------cc
Confidence 99999987643 6778899998765321 00 01
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 015133 174 AGPKVLAFEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHLLD 253 (412)
Q Consensus 174 ~~~~~lpFEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~ 253 (412)
.+++++.| .+|+.+++.+...++ .+++.++.+++.+.++.++..+.+|+.+|++|..|++.++|.|+++..|.+
T Consensus 152 ~g~~~ll~--~lld~ivd~y~~~l~----~i~~~id~lE~~l~~~~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~ 225 (280)
T 4egw_A 152 RGIGFLLY--HILNEITRSYSRILM----NLEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKR 225 (280)
T ss_dssp TTTTHHHH--HHHHHHHHHHHHHHH----HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHH--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 23455554 778888877777666 588888888888888888888999999999999999999999999999987
Q ss_pred CCchhHHHHHHHhhhcccccCCCccccccccCCCCcCCCCCChHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHhHHH
Q 015133 254 DDNDMAEMYLTEKLNASKEEVSDEDDDRSENNSQNFTSFKPNVEELEMLLEAYFAQ----IDGILQKLSDMSEYVDDTED 329 (412)
Q Consensus 254 ~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eEvE~LLE~Y~~~----~d~~~~~l~~l~e~i~~tee 329 (412)
.+... -.++. ..||++ +..+.+.++.+++.+..+.+
T Consensus 226 ~~~~~------------------------------------~~~~~----~~~l~Dv~dh~~~~~e~~~~~re~l~~l~d 265 (280)
T 4egw_A 226 KYLPI------------------------------------TTKED----RENFEDLYYDTLQLIDMSATYREVLTSMMD 265 (280)
T ss_dssp SCCSS------------------------------------CCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccc------------------------------------CCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65421 01122 245555 56677778888899999999
Q ss_pred HHHHHhHHHHHHHHH
Q 015133 330 CINIMLDDTQNQLLQ 344 (412)
Q Consensus 330 ~i~~~Ld~~rN~lmk 344 (412)
.+.+.+++++|++||
T Consensus 266 ~~~s~is~~~N~iMK 280 (280)
T 4egw_A 266 ITLSLENIKMNQIMK 280 (280)
T ss_dssp HHHHHCC--------
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999997
No 5
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=99.58 E-value=1.6e-13 Score=131.06 Aligned_cols=165 Identities=10% Similarity=0.102 Sum_probs=124.5
Q ss_pred CCceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCCeEEE--------------eccccee
Q 015133 25 MGLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRERAIVI--------------NLEHIKA 89 (412)
Q Consensus 25 ~~~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~~Ilv--------------nle~ir~ 89 (412)
+....|+.++.-.. . ....|.+.||||+..+. ++++ .++|++...++++++ .++++++
T Consensus 39 ~~~~~Wi~l~~p~~-~----e~~~l~~~~~l~~l~~ed~~~~--~~rpk~e~~~~~~fivl~~~~~~~~~~~~~~~~v~~ 111 (264)
T 3nvo_A 39 SQHPCWLHLNYTHP-D----SARWLASTPLLPNNVRDALAGE--SSRPRVSRMGEGTLITLRCINGSTDERPDQLVAMRL 111 (264)
T ss_dssp TTSCEEEEEETTSH-H----HHHHHHHCTTSCTTTHHHHTTC--CCSCEEEEETTEEEEEEECC----------CCEEEE
T ss_pred CCCCEEEEeCCCCH-H----HHHHHHhccCCCHHHHHHHhCC--CCCCceEEECCEEEEEEEecccCCCCCCcceEEEEE
Confidence 45678999987332 2 22478899999999999 8888 899999999999664 2467899
Q ss_pred eeecCeeEEecCCCcchhHHHHHHHHHhhhcccccccccccchhhhhhhhhhhccCCCCccccchhcccccCcCCCCCCC
Q 015133 90 IVTAKEVLMLYSTNPLVVQFVQDLQHRISSLQALSTQQAGERDEMEREDKAEANLSGPSQHTLRRRASISSNERKDDAPE 169 (412)
Q Consensus 90 II~~d~vllf~~~~~~~~~f~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (412)
+++.+.+++|+.... ++++.+++|+..+.+
T Consensus 112 ~l~~~~lITv~~~~~---~~~~~v~~rl~~~~~----------------------------------------------- 141 (264)
T 3nvo_A 112 YMDERFIVSTRQRKV---LALDDVVSDLQEGTG----------------------------------------------- 141 (264)
T ss_dssp EECSSEEEEEESSCC---HHHHHHHHHHHTTCS-----------------------------------------------
T ss_pred EEeCCEEEEEecCCc---CcHHHHHHHHHhCCC-----------------------------------------------
Confidence 999999999997643 778889999865421
Q ss_pred ccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 015133 170 TSVVAGPKVLAFEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIE 249 (412)
Q Consensus 170 ~~~~~~~~~lpFEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~ 249 (412)
..++.+ +-+.+|+.+++.+...++ .+++.++.+++.+.++ +...+.+|+.+|+++..|++.++|.++++.
T Consensus 142 ---~~~~~~--ll~~lld~ivd~y~~~l~----~l~~~id~lE~~l~~~-~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~ 211 (264)
T 3nvo_A 142 ---PVDCGG--WLVDVCDALTDHASEFIE----ELHDKIIDLEDNLLDQ-QIPPRGFLALLRKQLIVMRRYMAPQRDVYA 211 (264)
T ss_dssp ---CSSHHH--HHHHHHHHHHHHHHHHHH----HHHHHHHHHTTC-----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHHH--HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 011222 334677777766666555 5888888888777766 667789999999999999999999999999
Q ss_pred HHhcCCc
Q 015133 250 HLLDDDN 256 (412)
Q Consensus 250 ~Ll~~d~ 256 (412)
+|.+.+.
T Consensus 212 ~L~~~~~ 218 (264)
T 3nvo_A 212 RLASERL 218 (264)
T ss_dssp HHTTSCC
T ss_pred HHHhCCC
Confidence 9987654
No 6
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=99.56 E-value=3e-13 Score=128.26 Aligned_cols=201 Identities=11% Similarity=0.093 Sum_probs=145.0
Q ss_pred EEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCC-eEE--Eec------------ccceeeee
Q 015133 29 TWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRER-AIV--INL------------EHIKAIVT 92 (412)
Q Consensus 29 ~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~-~Il--vnl------------e~ir~II~ 92 (412)
.|+.+++-...+ ...|.+. |||+..+. ++++ .++|++...++ +++ ++. .+++++++
T Consensus 32 ~Wi~l~~p~~~e-----~~~l~~~-~l~~l~~ed~l~~--~~rpk~e~~~d~~lfivl~~~~~~~~~~~~~~~~l~i~l~ 103 (252)
T 3ck6_A 32 HWYHCERLHPDI-----RGWLEDN-HVPRATVDHLLAD--ESRPSFHPLDDDNFMLILRGINMNENASPEDMLSIRILYF 103 (252)
T ss_dssp EEEEEETTCTTH-----HHHHHHT-TCCHHHHHHHHCS--SCCCEEEECSTTCEEEEEEECCCSTTCCTTSCEEEEEEEE
T ss_pred EEEEecCCCHHH-----HHHHHHc-CCCHHHHHHHhCC--CCCCceEEeCCceEEEEEecCccCCCCCcccEEEEEEEEe
Confidence 999998854322 2477888 99999999 8998 89999999999 864 332 23567999
Q ss_pred cCeeEEecCCCcchhHHHHHHHHHhhhcccccccccccchhhhhhhhhhhccCCCCccccchhcccccCcCCCCCCCccc
Q 015133 93 AKEVLMLYSTNPLVVQFVQDLQHRISSLQALSTQQAGERDEMEREDKAEANLSGPSQHTLRRRASISSNERKDDAPETSV 172 (412)
Q Consensus 93 ~d~vllf~~~~~~~~~f~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (412)
.++|++++.... +.++.+++|+..+.+
T Consensus 104 ~~~lITvr~~~~---~~~~~v~~~l~~~~~-------------------------------------------------- 130 (252)
T 3ck6_A 104 QGALISTRKIPS---RAIMEIRQALAEHKG-------------------------------------------------- 130 (252)
T ss_dssp TTEEEEEESSCC---HHHHHHHHHHHTTCS--------------------------------------------------
T ss_pred CCEEEEEeCCCc---chHHHHHHHHHhCCC--------------------------------------------------
Confidence 999999987643 678888888854321
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 015133 173 VAGPKVLAFEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHLL 252 (412)
Q Consensus 173 ~~~~~~lpFEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll 252 (412)
..++.. |-+.+|+.+++.+...++ .+++.++.+++. ...+.+|+.+|+++..|++.++|.|+++..|.
T Consensus 131 ~~~~~~--ll~~lld~ivd~y~~~l~----~l~~~id~lE~~------~~~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~ 198 (252)
T 3ck6_A 131 PKSLAS--LLNQIIEGLNGKIDLYLD----TIEETLNEFDVN------DESTYNHIAAQKALISIKRFIRPQQYAIRDLI 198 (252)
T ss_dssp CSSHHH--HHHHHHHHHHHHHHHHHH----HHHHHHHTCCTT------CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHH--HHHHHHHHHHHHHHHHHH----HHHHHHHHHHcC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122 445777777777776666 577776655544 23577899999999999999999999999999
Q ss_pred cCCchhHHHHHHHhhhcccccCCCccccccccCCCCcCCCCCChHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHhHH
Q 015133 253 DDDNDMAEMYLTEKLNASKEEVSDEDDDRSENNSQNFTSFKPNVEELEMLLEAYFA----QIDGILQKLSDMSEYVDDTE 328 (412)
Q Consensus 253 ~~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eEvE~LLE~Y~~----~~d~~~~~l~~l~e~i~~te 328 (412)
+.+.. . ... . ..||+ ++..+.+.++.+++.+..+.
T Consensus 199 r~~~~-~----~~~----------------------------~--------~~~~rdv~d~~~~~~e~i~~~re~~~~l~ 237 (252)
T 3ck6_A 199 ESESE-L----VTS----------------------------R--------PHQYRFAHNNITRINETIEFYLGEVALFQ 237 (252)
T ss_dssp HTTCH-H----HHT----------------------------S--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCC-C----CHH----------------------------H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86543 1 110 0 23554 46677888899999999999
Q ss_pred HHHHHHhHHHHHHHH
Q 015133 329 DCINIMLDDTQNQLL 343 (412)
Q Consensus 329 e~i~~~Ld~~rN~lm 343 (412)
+.+.+.+++++|++|
T Consensus 238 d~~~s~~s~~~N~~m 252 (252)
T 3ck6_A 238 DEIKHNRDEKTNKNS 252 (252)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHHHHccCC
Confidence 999999999999987
No 7
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=99.23 E-value=7.2e-11 Score=112.80 Aligned_cols=167 Identities=16% Similarity=0.242 Sum_probs=120.0
Q ss_pred ceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCCeEE--Ee------------cccceeee
Q 015133 27 LRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRERAIV--IN------------LEHIKAIV 91 (412)
Q Consensus 27 ~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~~Il--vn------------le~ir~II 91 (412)
...|+.+++-.+... ...|.+.||||+..+. ++++ .++|++...+++++ ++ .+++.+++
T Consensus 61 ~~~Wi~l~~p~~~~e----~~~l~~~f~l~~l~~ed~l~~--~~rpk~e~~~d~lfivl~~~~~~~~~~~~~~~~v~~~l 134 (269)
T 2bbh_A 61 TPTWINITGIHRTDV----VQRVGEFFGTHPLVLEDILNV--HQRPKVEFFENYVFIVLKMFTYDKNLHELESEQVSLIL 134 (269)
T ss_dssp SCEEEEEECTTCHHH----HHHHHHHHTCCHHHHHHHHCT--TCCCEEEECSSEEEEEEEEEECCC--CCCEEEEEEEEE
T ss_pred CeEEEEecCCCCHHH----HHHHHHHcCCCHhHHHHHhCc--CCCceEEEECCEEEEEEEeeeecCCcCceeEEEEEEEE
Confidence 457888887643332 2478899999999999 8999 89999999999963 32 34578999
Q ss_pred ecCeeEEecCCCcchhHHHHHHHHHhhhcccccccccccchhhhhhhhhhhccCCCCccccchhcccccCcCCCCCCCcc
Q 015133 92 TAKEVLMLYSTNPLVVQFVQDLQHRISSLQALSTQQAGERDEMEREDKAEANLSGPSQHTLRRRASISSNERKDDAPETS 171 (412)
Q Consensus 92 ~~d~vllf~~~~~~~~~f~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (412)
+.+.|++|+.... +.++.+++|+....+. . +
T Consensus 135 ~~~~lITv~~~~~---~~~~~v~~rl~~~~~~----------~-------------~----------------------- 165 (269)
T 2bbh_A 135 TKNCVLMFQEKIG---DVFDPVRERIRYNRGI----------I-------------R----------------------- 165 (269)
T ss_dssp ETTEEEEEESSSC---CSCHHHHHHHHTTCTT----------G-------------G-----------------------
T ss_pred ECCEEEEEECCCC---CcHHHHHHHHHhcCCc----------h-------------h-----------------------
Confidence 9999999986642 4566778888654210 0 0
Q ss_pred ccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015133 172 VVAGPKVLAFEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHL 251 (412)
Q Consensus 172 ~~~~~~~lpFEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~L 251 (412)
..+++++. +.+|+.+++.+...++ .+++.++.+++.+.++.++..+.+|..+|+++..|++.++|.++++..|
T Consensus 166 -~~~~~~ll--~~lld~ivd~y~~~l~----~i~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L 238 (269)
T 2bbh_A 166 -KKRADYLL--YSLIDALVDDYFVLLE----KIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSL 238 (269)
T ss_dssp -GSCHHHHH--HHHHHHHHHHHHHHHH----HHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCHHHHH--HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01222233 4777888777777666 5888888888877766666789999999999999999999999999999
Q ss_pred hcCC
Q 015133 252 LDDD 255 (412)
Q Consensus 252 l~~d 255 (412)
.+.+
T Consensus 239 ~~~~ 242 (269)
T 2bbh_A 239 YRDV 242 (269)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8653
No 8
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=99.19 E-value=1.9e-10 Score=109.81 Aligned_cols=167 Identities=14% Similarity=0.228 Sum_probs=125.7
Q ss_pred CceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCCeEE--E---------ecccceeeeec
Q 015133 26 GLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRERAIV--I---------NLEHIKAIVTA 93 (412)
Q Consensus 26 ~~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~~Il--v---------nle~ir~II~~ 93 (412)
+...|+.+++-.+... ...|.+.||||+..+. ++++ .++|++...+++++ + ..+++.++++.
T Consensus 65 ~~~~Wi~l~~p~~~~e----~~~l~~~f~l~~l~~ed~l~~--~~rpk~e~~~d~lfivl~~~~~~~~~~~~~v~~~l~~ 138 (266)
T 2hn1_A 65 NKKLWIDVVGVHDESL----IAKICEFLGIHPLAAEDILNT--AQRVKIEDYDDHLFLVLKILLYNETLEIDQLSLVLKK 138 (266)
T ss_dssp TSEEEEEECCCCCHHH----HHHHHHTTTCCHHHHHHHHBT--TCCSEEEECSSEEEEEEEEEEESSSEEEEEEEEEEET
T ss_pred CCeEEEEeCCCCCHHH----HHHHHHHcCCCHhHHHHHhCC--CCCCeEEEECCEEEEEEEeccccCccceEEEEEEEEC
Confidence 4578999988644332 2478899999999999 8999 89999999999963 3 34568999999
Q ss_pred CeeEEecCCCcchhHHHHHHHHHhhhcccccccccccchhhhhhhhhhhccCCCCccccchhcccccCcCCCCCCCcccc
Q 015133 94 KEVLMLYSTNPLVVQFVQDLQHRISSLQALSTQQAGERDEMEREDKAEANLSGPSQHTLRRRASISSNERKDDAPETSVV 173 (412)
Q Consensus 94 d~vllf~~~~~~~~~f~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (412)
+.|++|..... +.++.+++|+... +. .. .
T Consensus 139 ~~lITv~~~~~---~~~~~v~~rl~~~-~~----------~~-------------------------------------~ 167 (266)
T 2hn1_A 139 NLVATFEEREY---WILDSIRSRLKSG-GR----------MR-------------------------------------K 167 (266)
T ss_dssp TEEEEEESSSS---CSTHHHHHHHHSS-SH----------HH-------------------------------------H
T ss_pred CEEEEEEcCCC---ChHHHHHHHHHhC-Cc----------hh-------------------------------------h
Confidence 99999986643 4557788887643 10 00 0
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 015133 174 AGPKVLAFEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHLLD 253 (412)
Q Consensus 174 ~~~~~lpFEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~ 253 (412)
.+++.+. +.+|+.+++.+...++ .+++.++.+++.+.++.+ ..+.+|..+|+++..|++.+++.+++++.|.+
T Consensus 168 ~~~~~ll--~~lld~ivd~y~~~l~----~i~~~id~lE~~l~~~~~-~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~ 240 (266)
T 2hn1_A 168 LAGDYLA--YTILDAVVDSYFEALL----KISDEIEVLEDEVVSGDS-TLIGKIHSLKREILAFRNAVWPLRDVLSFFTR 240 (266)
T ss_dssp SCHHHHH--HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cCHHHHH--HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1223333 3677777777766665 588888888888766555 77899999999999999999999999999997
Q ss_pred CCc
Q 015133 254 DDN 256 (412)
Q Consensus 254 ~d~ 256 (412)
.+.
T Consensus 241 ~~~ 243 (266)
T 2hn1_A 241 VEH 243 (266)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=93.34 E-value=1.5 Score=42.52 Aligned_cols=174 Identities=11% Similarity=0.027 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCchhHHHHH
Q 015133 184 RALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHLLDDDNDMAEMYL 263 (412)
Q Consensus 184 ~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~~d~dm~~m~L 263 (412)
.+|..+++.+++.+.. +-+.+..-++++++.+....-. ..-+++..+++.+..+|..+....+ +..
T Consensus 156 ~ll~~lld~ivd~~~~----~l~~l~~~i~~lE~~l~~~~~~---~~l~~l~~lrr~l~~lrr~l~~~~~----vl~--- 221 (339)
T 4ev6_A 156 FLLYHILNEITRSYSR----ILMNLEDELEELEDKLLAGYDR---EVMEKILGLRKTLVYFHKSLIANRD----VLV--- 221 (339)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTSTTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHH---
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhh---hHHHHHHHHHHHHHHHHHHhhhhHH----HHH---
Confidence 4566666666654442 3333344455555554433221 3334667777777777766554321 100
Q ss_pred HHhhhcccccCCCccccccccCCCCcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHhH----HHH
Q 015133 264 TEKLNASKEEVSDEDDDRSENNSQNFTSFKPNVEELEMLLEAYFAQIDGILQKLSDMSEYVDDTEDCINIMLD----DTQ 339 (412)
Q Consensus 264 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eEvE~LLE~Y~~~~d~~~~~l~~l~e~i~~tee~i~~~Ld----~~r 339 (412)
... .....-...-...|++++ .+++..+.+.++...+.++..+| ..-
T Consensus 222 --~L~------------------------~~~~~~~~~~~~~~l~dv---~~~~~~l~e~~~~~~e~l~~l~d~~~s~is 272 (339)
T 4ev6_A 222 --LLK------------------------RKYLPITTKEDRENFEDL---YYDTLQLIDMSATYREVLTSMMDITLSLEN 272 (339)
T ss_dssp --HHH------------------------HSCBTTBCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHh------------------------hccccccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 001111112234556554 44555555555555555555444 444
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015133 340 NQLLQMGVLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIK-FWQTTCGTIGGCLALYLIAVGWGKKKI 408 (412)
Q Consensus 340 N~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~g-F~~v~~~~~~~~~~l~~~~~~~frrk~ 408 (412)
|+..+ ++-+.|++-++....+=+-|. -.|-...-|.. +.+...+ ++++++++.++.+..-|
T Consensus 273 ~~~N~---~mk~LTiit~IflP~T~IaGi--yGMNf~~mPel~~~~gy~~---~l~~m~~~~~~~~~~fk 334 (339)
T 4ev6_A 273 IKMNQ---IMKILTMVTTIFAVPMWITGI--YGMNFSYLPLANNPQGFWL---VMALMVVIIMIFVYIFR 334 (339)
T ss_dssp HHHHH---HHHHHHHHHHHSSHHHHHHHH--TTCCCSCCTTSSCTTHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHhh--ccCcCCCCCCccCchHHHH---HHHHHHHHHHHHHHHHH
Confidence 55444 777777777777777777773 34444334432 3333332 23556666666665544
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=91.45 E-value=11 Score=36.67 Aligned_cols=174 Identities=15% Similarity=0.101 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCchhHHHHH
Q 015133 184 RALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHLLDDDNDMAEMYL 263 (412)
Q Consensus 184 ~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~~d~dm~~m~L 263 (412)
.++.++++.+++.+.. +-+.+..-++++++.+....- ...-+++..+++.+..+|..+..+.+- +
T Consensus 180 ~ll~~lld~ivd~y~~----~l~~l~~~id~lE~~v~~~~~---~~~l~~l~~lrr~l~~lrr~l~p~~~v--------l 244 (363)
T 2iub_A 180 YLLYSLIDALVDDYFV----LLEKIDDEIDVLEEEVLERPE---KETVQRTHQLKRNLVELRKTIWPLREV--------L 244 (363)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTSSCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 3555666665554442 333344445556555543321 133446777777777777776654320 1
Q ss_pred HHhhhcccccCCCccccccccCCCCcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH----HHHHhHHHH
Q 015133 264 TEKLNASKEEVSDEDDDRSENNSQNFTSFKPNVEELEMLLEAYFAQIDGILQKLSDMSEYVDDTEDC----INIMLDDTQ 339 (412)
Q Consensus 264 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eEvE~LLE~Y~~~~d~~~~~l~~l~e~i~~tee~----i~~~Ld~~r 339 (412)
. +.. ......+..-...|++++ .+++..+.+.++...+. .+..++..-
T Consensus 245 ~-~L~------------------------~~~~~~~~~~~~~~lrDv---~d~~~~~~e~~~~~re~l~~l~d~~~s~is 296 (363)
T 2iub_A 245 S-SLY------------------------RDVPPLIEKETVPYFRDV---YDHTIQIADTVETFRDIVSGLLDVYLSSVS 296 (363)
T ss_dssp H-HHH------------------------SCCSSSCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHH------------------------hcccccCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 100 012223333445677775 44444444555554444 445555566
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHhhcC
Q 015133 340 NQLLQMGVLLSAANMILNAGIVVVGLFGMNIHITLFDAPTIKFW-QTTCGTIGGCLALYLIAVGWGKKKI 408 (412)
Q Consensus 340 N~lmk~~l~LTi~s~i~~~~t~IaGifGMN~~~~pe~~~~~gF~-~v~~~~~~~~~~l~~~~~~~frrk~ 408 (412)
|+..+ ++-++|++-++....+=+-|. -.|-+..-|..-| +...+ ++++++++.+..+.+-|
T Consensus 297 ~~~N~---imk~LTiit~IflP~T~IaGi--yGMNf~~mPel~~~~Gy~~---~l~~m~~i~~~~~~~Fk 358 (363)
T 2iub_A 297 NKTNE---VMKVLTIIATIFMPLTFIAGI--YGMNFEYMPELRWKWGYPV---VLAVMGVIAVIMVVYFK 358 (363)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHTTS--CC--------------CHH---HHHHHHHHHHHHHTTTT
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHhh--hcccCCCCCcccCcHHHHH---HHHHHHHHHHHHHHHHH
Confidence 66555 999999999999998989884 3444433443222 22222 23455555555554433
No 11
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=85.15 E-value=0.49 Score=27.86 Aligned_cols=12 Identities=67% Similarity=1.511 Sum_probs=5.7
Q ss_pred CCCCCCCCCCCC
Q 015133 7 GGGGGGGGPTAT 18 (412)
Q Consensus 7 ~~~~~~~~~~~~ 18 (412)
||||||||...+
T Consensus 1 ggggggggaash 12 (29)
T 1cn3_F 1 GGGGGGGGAASH 12 (29)
T ss_dssp CCCCCCSTTTCC
T ss_pred CCCCCCCccccc
Confidence 445555554443
No 12
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=72.04 E-value=1.2 Score=27.64 Aligned_cols=10 Identities=80% Similarity=1.790 Sum_probs=5.0
Q ss_pred CCCCCCCCCC
Q 015133 7 GGGGGGGGPT 16 (412)
Q Consensus 7 ~~~~~~~~~~ 16 (412)
||||||||..
T Consensus 13 ggggggggsa 22 (37)
T 2i9o_A 13 GGGGGGGGSA 22 (37)
T ss_dssp CSCCCCSCSS
T ss_pred cCCCCCcchH
Confidence 4455555544
No 13
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=67.95 E-value=10 Score=21.89 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Q 015133 227 VRQIKSRLVAINGRVQKVRDEIEHL 251 (412)
Q Consensus 227 L~~lk~~L~~l~~~v~~vre~l~~L 251 (412)
++++|.++.+++..++.+++.+.++
T Consensus 2 vyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhcc
Confidence 4688899999999999988887664
No 14
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=63.64 E-value=11 Score=25.34 Aligned_cols=15 Identities=7% Similarity=-0.015 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhcCC
Q 015133 395 ALYLIAVGWGKKKIM 409 (412)
Q Consensus 395 ~l~~~~~~~frrk~w 409 (412)
++.++.++|+|||+.
T Consensus 26 ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 26 VVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhhHh
Confidence 444555666666653
No 15
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=62.45 E-value=81 Score=27.69 Aligned_cols=67 Identities=21% Similarity=0.429 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHH-HHHHHHHHHHhhhHHHHHHHHHHhc
Q 015133 186 LESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVR-QIKSRLVAINGRVQKVRDEIEHLLD 253 (412)
Q Consensus 186 LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~-~lk~~L~~l~~~v~~vre~l~~Ll~ 253 (412)
+...+......+...+..+...+.+..+++...+.. .++.++ ++++.+..++.++.|.++.|...+.
T Consensus 60 l~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~~-~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~ 127 (191)
T 1nfn_A 60 LRALMDETMKELKAYKSELEEQLTPVAEETRARLSK-ELQAAQARLGADMEDVCGRLVQYRGEVQAMLG 127 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC----------CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444444444444555555555554444443322 334444 4677777888888887777765553
No 16
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=60.41 E-value=84 Score=28.88 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHhHHH
Q 015133 310 IDGILQKLSDMSEYVDDTEDCINIMLDDT 338 (412)
Q Consensus 310 ~d~~~~~l~~l~e~i~~tee~i~~~Ld~~ 338 (412)
..++.+++..+.+.++...+.++..+|..
T Consensus 239 l~Dv~dh~~~~~e~~~~~re~l~~l~d~~ 267 (280)
T 4egw_A 239 FEDLYYDTLQLIDMSATYREVLTSMMDIT 267 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777666655543
No 17
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=60.15 E-value=8.7 Score=24.97 Aligned_cols=7 Identities=0% Similarity=0.316 Sum_probs=2.8
Q ss_pred HHHHhhc
Q 015133 401 VGWGKKK 407 (412)
Q Consensus 401 ~~~frrk 407 (412)
.+||+|+
T Consensus 31 ~~~~~rr 37 (38)
T 2k1k_A 31 LVFRSRR 37 (38)
T ss_dssp HHHHHCC
T ss_pred HHHHeec
Confidence 3344443
No 18
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=56.74 E-value=18 Score=24.35 Aligned_cols=15 Identities=13% Similarity=0.113 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhcCC
Q 015133 395 ALYLIAVGWGKKKIM 409 (412)
Q Consensus 395 ~l~~~~~~~frrk~w 409 (412)
++.++.++|+|||+.
T Consensus 25 ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhhhhh
Confidence 344445666666653
No 19
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=54.82 E-value=18 Score=24.35 Aligned_cols=18 Identities=11% Similarity=-0.130 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 015133 392 GCLALYLIAVGWGKKKIM 409 (412)
Q Consensus 392 ~~~~l~~~~~~~frrk~w 409 (412)
+.+++.++..+|+||++.
T Consensus 23 l~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhheehhhh
Confidence 344455556788888874
No 20
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=52.79 E-value=69 Score=23.89 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHH
Q 015133 194 CRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRD 246 (412)
Q Consensus 194 ~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre 246 (412)
+..|+.-++.|..+...++.+..+ .=..||++++.++..+.++++
T Consensus 9 v~~LE~sld~LQTrfARLLaEy~s--------sQ~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 9 VTRMESSVDLLQTRFARILAEYES--------MQQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhcccCC
Confidence 345555555555555555444432 124789999999999888554
No 21
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=50.35 E-value=87 Score=28.32 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHh
Q 015133 231 KSRLVAINGRVQKVRDEIEHLL 252 (412)
Q Consensus 231 k~~L~~l~~~v~~vre~l~~Ll 252 (412)
.++|..+++.+-.+|..+.-+.
T Consensus 186 l~~l~~lrr~l~~lrr~l~p~~ 207 (264)
T 3nvo_A 186 RGFLALLRKQLIVMRRYMAPQR 207 (264)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 3467778888877777776554
No 22
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=48.37 E-value=32 Score=21.75 Aligned_cols=29 Identities=7% Similarity=-0.258 Sum_probs=19.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 015133 377 APTIKFWQTTCGTIGGCLALYLIAVGWGK 405 (412)
Q Consensus 377 ~~~~gF~~v~~~~~~~~~~l~~~~~~~fr 405 (412)
+++-|-+.++.+..+..++.|..++..|-
T Consensus 3 ~~l~GTl~~V~ilg~~I~i~W~~vf~lFl 31 (34)
T 3s8f_C 3 EKPKGALAVILVLTLTILVFWLGVYAVFF 31 (34)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceehHHHHHHHHHHHHHHHHHeeee
Confidence 46778887777666666666766665553
No 23
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=48.15 E-value=9.6 Score=32.31 Aligned_cols=57 Identities=23% Similarity=0.408 Sum_probs=35.7
Q ss_pred CCCCCCceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCCeEEEecccce
Q 015133 21 PRKGMGLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRERAIVINLEHIK 88 (412)
Q Consensus 21 ~~~~~~~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~~Ilvnle~ir 88 (412)
++.....|.|.+||+.|..--. +. +.+++. |+ .=-| .+.|.+.+=+..||||-+.|.
T Consensus 6 ~~~~~~~r~W~viDA~g~~LGR-LA-s~iAk~-------L~GKhKp--~ytP~~d~Gd~VVViNaeki~ 63 (142)
T 3r8s_J 6 AKPETVKRDWYVVDATGKTLGR-LA-TELARR-------LRGKHKA--EYTPHVDTGDYIIVLNADKVA 63 (142)
T ss_dssp CCTTTCCCCEEEEECTTCBHHH-HH-HHHHHH-------HHTTTST--TCCTTSCCCCEEEEECGGGCB
T ss_pred CChhhccCcEEEEeCCCCchHH-HH-HHHHHH-------HcCCCCC--ccCCCccCCCEEEEEeCcccC
Confidence 4445568999999999873211 00 122222 22 1124 677888888899999998654
No 24
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=47.23 E-value=15 Score=30.49 Aligned_cols=33 Identities=6% Similarity=-0.203 Sum_probs=26.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015133 377 APTIKFWQTTCGTIGGCLALYLIAVGWGKKKIM 409 (412)
Q Consensus 377 ~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~w 409 (412)
+..++|.+++++|...+++++.+|+-|.|-||.
T Consensus 48 ~~~~~ylYIL~vmgffgff~~GImLsYiRSKk~ 80 (138)
T 2k21_A 48 DGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKL 80 (138)
T ss_dssp TCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeehHHHHHHHHHHHHHHHHHHHhHhhhc
Confidence 455678888888888888888899999998863
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=43.37 E-value=2.1e+02 Score=29.26 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHhH
Q 015133 308 AQIDGILQKLSDMSEYVDDTEDCINIMLD 336 (412)
Q Consensus 308 ~~~d~~~~~l~~l~e~i~~tee~i~~~Ld 336 (412)
+++..+-+.|+.++..|.-+|--|.+++.
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555554
No 26
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=42.44 E-value=68 Score=30.13 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhh
Q 015133 185 ALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRV 241 (412)
Q Consensus 185 ~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v 241 (412)
.||++....+..+-.++..|...+..|+.+|...+.. .-+|+..|+.++..|+..+
T Consensus 25 eLe~V~n~tL~gilRQL~dLs~~A~dIF~eL~~e~~~-~~~R~~~L~~RI~~L~~~v 80 (279)
T 3p8c_D 25 ELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHS-FSFRVNSLQERVDRLSVSV 80 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 4778877777777778888988888888888765432 2344555555555555444
No 27
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=39.57 E-value=83 Score=21.24 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhh
Q 015133 194 CRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRV 241 (412)
Q Consensus 194 ~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v 241 (412)
+..|+.-++.|......++.+..+. =..||++++.++..|
T Consensus 7 v~~Le~~ld~LqTr~ArLlae~~ss--------q~KlKqRit~lE~~v 46 (46)
T 3swy_A 7 VEQLGSSLDTLQTRFARLLAEYNAT--------QMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcC
Confidence 3445555555555554444444321 136777887777653
No 28
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=39.14 E-value=30 Score=20.75 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Q 015133 228 RQIKSRLVAINGRVQKVRDEIEHL 251 (412)
Q Consensus 228 ~~lk~~L~~l~~~v~~vre~l~~L 251 (412)
..+|++|+.++..|..+-+.|+++
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457888888888888777766654
No 29
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=39.02 E-value=1.8e+02 Score=24.80 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 015133 295 NVEELEMLLEAYFAQI-DGILQKLSDMSE 322 (412)
Q Consensus 295 ~~eEvE~LLE~Y~~~~-d~~~~~l~~l~e 322 (412)
..+++..-+++|...+ ..+...++.|+.
T Consensus 129 ~~EelR~kl~P~~eeL~~~~~~~~eeLr~ 157 (165)
T 1gs9_A 129 STEELRVRLASHLRKLRKRLLRDADDLQK 157 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4456666666666664 233344444443
No 30
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=37.97 E-value=2.4e+02 Score=27.60 Aligned_cols=18 Identities=6% Similarity=0.150 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhhHH
Q 015133 226 RVRQIKSRLVAINGRVQK 243 (412)
Q Consensus 226 ~L~~lk~~L~~l~~~v~~ 243 (412)
+|+.||..|..+...++.
T Consensus 135 ~ir~Lq~~l~~q~~kiqR 152 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKR 152 (390)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444333333333
No 31
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=37.91 E-value=29 Score=24.38 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=5.4
Q ss_pred CCchHHHHHHHH
Q 015133 378 PTIKFWQTTCGT 389 (412)
Q Consensus 378 ~~~gF~~v~~~~ 389 (412)
.+...|++++.+
T Consensus 8 ~~vp~wiIi~sv 19 (54)
T 2knc_A 8 RAIPIWWVLVGV 19 (54)
T ss_dssp TTCCHHHHHHHH
T ss_pred CCcchHHHHHHH
Confidence 334455554443
No 32
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=36.84 E-value=67 Score=21.23 Aligned_cols=31 Identities=29% Similarity=0.287 Sum_probs=14.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015133 379 TIKFWQTTCGTIGGCLALYLIAVGWGKKKIML 410 (412)
Q Consensus 379 ~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl 410 (412)
+...|++++.++ +.+++..+..+.++|-|.|
T Consensus 7 ~vp~wiIi~s~l-~GLllL~li~~~LwK~GFF 37 (42)
T 2k1a_A 7 AIPIWWVLVGVL-GGLLLLTILVLAMWKVGFF 37 (42)
T ss_dssp CCCHHHHHHHHH-HHHHHHHHHHHHHHHTTTT
T ss_pred CcchHHHHHHHH-HHHHHHHHHHHHHHHcCcc
Confidence 344455544433 3334434444444555554
No 33
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=34.74 E-value=19 Score=30.65 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=33.8
Q ss_pred ceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCCeEEEecccceeeeecC
Q 015133 27 LRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRERAIVINLEHIKAIVTAK 94 (412)
Q Consensus 27 ~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~~Ilvnle~ir~II~~d 94 (412)
.|.|.+||+.|..--.-. +.+.+. || .=-| .+.|.+.+=+..||||-+.| .|+.+
T Consensus 15 ~r~w~viDA~g~~LGRLA--s~iA~~-------L~GKhKp--~ytP~~D~Gd~VVViNaeki--~~tG~ 70 (148)
T 2ftc_H 15 ARIWYLLDGKMQPPGKLA--AMASIR-------LQGLHKP--VYHALSDCGDHVVIMNTRHI--AFSGN 70 (148)
T ss_pred cCcEEEEeCCCCchHHHH--HHHHHH-------HhccCCC--CcCccccCCCEEEEEeceee--Eeccc
Confidence 799999999986321100 122221 22 1124 67788999999999998854 44433
No 34
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=34.36 E-value=31 Score=24.21 Aligned_cols=7 Identities=29% Similarity=0.624 Sum_probs=3.8
Q ss_pred HHHhhcC
Q 015133 402 GWGKKKI 408 (412)
Q Consensus 402 ~~frrk~ 408 (412)
-+|||++
T Consensus 34 GFFKR~~ 40 (54)
T 2l8s_A 34 GFFKRPL 40 (54)
T ss_dssp HHTTSCC
T ss_pred CcccCCC
Confidence 4566654
No 35
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=33.03 E-value=13 Score=31.48 Aligned_cols=53 Identities=17% Similarity=0.358 Sum_probs=33.4
Q ss_pred CCceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCCeEEEecccce
Q 015133 25 MGLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRERAIVINLEHIK 88 (412)
Q Consensus 25 ~~~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~~Ilvnle~ir 88 (412)
...|.|.+||+.|..--. +. +.+++. || .=-| .+.|.+.+=+..||||-+.|.
T Consensus 8 ~~~r~w~viDA~~~~LGR-LA-s~iAk~-------L~GKhKp--~ytP~~d~Gd~VVViNaeki~ 61 (140)
T 3v2d_N 8 QVEPRWVLIDAEGKTLGR-LA-TKIATL-------LRGKHRP--DWTPNVAMGDFVVVVNADKIR 61 (140)
T ss_dssp CCCCCEEEEECSSSBTTH-HH-HHHHHH-------HHTTTST--TCCTTSCCCCEEEEECGGGCB
T ss_pred cccceEEEEeCCCCchHH-HH-HHHHHH-------HcCCCCC--ccCCCccCCCEEEEEeCcceE
Confidence 458999999998873221 00 122222 22 1124 677888888999999998653
No 36
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=31.36 E-value=2.2e+02 Score=26.92 Aligned_cols=69 Identities=20% Similarity=0.413 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHH-HHHHHHHHHHhhhHHHHHHHHHHhcCC
Q 015133 186 LESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVR-QIKSRLVAINGRVQKVRDEIEHLLDDD 255 (412)
Q Consensus 186 LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~-~lk~~L~~l~~~v~~vre~l~~Ll~~d 255 (412)
++..++...+.+......+...+.++.+++...+. ...+.|+ .+...+..++.++.|.++.+...+..+
T Consensus 68 l~~l~~~~~~el~~y~~~l~~qL~P~~~e~~~~l~-~~~~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~ 137 (307)
T 2l7b_A 68 LRALMDETMKELKAYKSELEEQLTPVAEETRARLS-KELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQS 137 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSCCSSTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333222221 1233333 466778889999999998888877644
No 37
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=30.89 E-value=1.8e+02 Score=22.65 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHHHH
Q 015133 221 TLNLERVRQIKSRLVAINGRVQKVR 245 (412)
Q Consensus 221 ~~~L~~L~~lk~~L~~l~~~v~~vr 245 (412)
+.-..+|+.+|++|..+++.++.++
T Consensus 70 ~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 70 GMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888888877766543
No 38
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=29.20 E-value=3e+02 Score=24.43 Aligned_cols=33 Identities=9% Similarity=0.142 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHhHHHHHH
Q 015133 309 QIDGILQKLSDMSEYVDDTEDCINIMLDDTQNQ 341 (412)
Q Consensus 309 ~~d~~~~~l~~l~e~i~~tee~i~~~Ld~~rN~ 341 (412)
...++.+++..+.+.++...|.++..++...+.
T Consensus 211 ~~rdv~d~~~~~~e~i~~~re~~~~l~d~~~s~ 243 (252)
T 3ck6_A 211 QYRFAHNNITRINETIEFYLGEVALFQDEIKHN 243 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888999999999999888887776655443
No 39
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=28.98 E-value=1.8e+02 Score=22.50 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHH-HHhhhHHHH
Q 015133 223 NLERVRQIKSRLVA-INGRVQKVR 245 (412)
Q Consensus 223 ~L~~L~~lk~~L~~-l~~~v~~vr 245 (412)
-..+|+.+|+.|.. +++.++.+.
T Consensus 70 ~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 70 YKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567777777776 666666543
No 40
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=27.73 E-value=20 Score=31.31 Aligned_cols=55 Identities=24% Similarity=0.451 Sum_probs=34.9
Q ss_pred CceEEEEEcCCCCeeEEEehhhhhHHhcCCCchhhh-hhcCCCCCCceEeeeCCeEEEecccceeeeec
Q 015133 26 GLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLR-VLDPLLSYPSSILGRERAIVINLEHIKAIVTA 93 (412)
Q Consensus 26 ~~~~w~~id~~g~~~~~~~~k~~l~~~~gL~~RDLr-~Ld~~~s~~~~I~~R~~~Ilvnle~ir~II~~ 93 (412)
..|.|.+||+.|..--.-. +.+++. || .=-| .+.|.+.+=+..||||-+.| .|+.
T Consensus 37 ~~r~W~vIDA~g~~LGRLA--s~IAk~-------L~GKhKP--~ytP~~D~GD~VVVINAeki--~lTG 92 (174)
T 2zjr_G 37 DEQNWVVVDASGVPLGRLA--TLIASR-------IRGKHRP--DFTPNMIQGDFVVVINAAQV--ALTG 92 (174)
T ss_dssp SCCCEEEEECTTSBHHHHH--HHHHHH-------HHCSSCS--SCCSSSCCCCEEEEECCTTC--BCSS
T ss_pred ccccEEEEeCCCCchHHHH--HHHHHH-------HhccCCC--ccCccccCCCEEEEEeCeee--Eecc
Confidence 6899999999987432100 122221 22 1124 67788999999999999864 4553
No 41
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=25.02 E-value=3.3e+02 Score=23.34 Aligned_cols=47 Identities=11% Similarity=0.268 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCC
Q 015133 312 GILQKLSDMSEYVDDTEDCINIMLDDTQNQLLQMGVLLSAANMILNAGIVVVGLFGMNI 370 (412)
Q Consensus 312 ~~~~~l~~l~e~i~~tee~i~~~Ld~~rN~lmk~~l~LTi~s~i~~~~t~IaGifGMN~ 370 (412)
++...++...+.|......||.....--+.+-. -|..+|||+||+--
T Consensus 107 ~Lq~eL~~~EnrIa~ARr~YN~aV~~yN~~i~~------------FP~~ivA~l~gf~~ 153 (171)
T 2etd_A 107 QLMDELAGTENRIAVARRDYNEAVXXYNTAIXX------------FPGVIFAXMFGFEE 153 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------------CCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------------CcHHHHHHHhCCCC
Confidence 345566666667777776666654443333333 28889999999753
No 42
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=24.68 E-value=29 Score=22.15 Aligned_cols=11 Identities=9% Similarity=-0.052 Sum_probs=7.2
Q ss_pred HHHHHHHhhcC
Q 015133 398 LIAVGWGKKKI 408 (412)
Q Consensus 398 ~~~~~~frrk~ 408 (412)
.+..+|+||++
T Consensus 25 l~~~~~iRRr~ 35 (35)
T 1iij_A 25 VVVGILIKRRR 35 (35)
T ss_dssp TTTTHHHHHCC
T ss_pred HHhheEEeecC
Confidence 34567788875
No 43
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=24.54 E-value=2.8e+02 Score=22.50 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCchh
Q 015133 196 CLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSRLVAINGRVQKVRDEIEHLLDDDNDM 258 (412)
Q Consensus 196 ~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l~~Ll~~d~dm 258 (412)
++|.+++.+.+.+-.+.-.+.. ..+..-..|..|+++++.++..+-..|.+|+-|+-.....
T Consensus 32 ~~~~~~~~~~~~ig~L~~~l~~-~aN~T~~aL~~L~~q~Tslr~~~LQNRraLD~Lla~qGG~ 93 (125)
T 4g2k_A 32 HIENEIARIKKLIGNLVSRLRR-LANQTAKSLELLLRVTTEERTFSLINRHAIDFLLTRWGGT 93 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5677777777777766655543 2333445677788899999999999999998887655543
No 44
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=22.26 E-value=1.3e+02 Score=21.91 Aligned_cols=25 Identities=16% Similarity=0.009 Sum_probs=11.9
Q ss_pred CCchHH-HHHHHHHHHHHHHHHHHHHHH
Q 015133 378 PTIKFW-QTTCGTIGGCLALYLIAVGWG 404 (412)
Q Consensus 378 ~~~gF~-~v~~~~~~~~~~l~~~~~~~f 404 (412)
+.|... ++++++ +++++++++.+||
T Consensus 5 ~~~p~~LivlGg~--~~lll~~glcI~c 30 (70)
T 2klu_A 5 PRGSMALIVLGGV--AGLLLFIGLGIFF 30 (70)
T ss_dssp CCCSSHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHH--HHHHHHHHHHHHH
Confidence 344444 344443 3455556665553
No 45
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=21.80 E-value=3.9e+02 Score=23.17 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHhhHH
Q 015133 295 NVEELEMLLEAYFAQI-DGILQKLSDMSEYVD 325 (412)
Q Consensus 295 ~~eEvE~LLE~Y~~~~-d~~~~~l~~l~e~i~ 325 (412)
..+++-.-|.+|..++ ..+...++.|+..+.
T Consensus 129 ~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~ 160 (191)
T 1nfn_A 129 STEELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhH
Confidence 4455555556666553 233444444444443
No 46
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.59 E-value=2.4e+02 Score=20.47 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015133 224 LERVRQIKSRLVAINGRVQKVRDEIEHL 251 (412)
Q Consensus 224 L~~L~~lk~~L~~l~~~v~~vre~l~~L 251 (412)
-+.+...|.++.++++.++.+.-.|+.+
T Consensus 48 ~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 48 NDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457778888999999888888777654
No 47
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=21.13 E-value=2.3e+02 Score=29.19 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=37.3
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHH----HHHH-HhhhHHHHHHH
Q 015133 174 AGPKVLAFEFRALESCLESACRCLDSETRTLEEEAYPALDELTTKISTLNLERVRQIKSR----LVAI-NGRVQKVRDEI 248 (412)
Q Consensus 174 ~~~~~lpFEl~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~~~~~~~L~~L~~lk~~----L~~l-~~~v~~vre~l 248 (412)
..+...|| .++|.++...+..++.-....=+.+...+......+....+.+--.|+++ +..+ ++...+..+.+
T Consensus 419 ~~~~f~~~--~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i 496 (608)
T 3szr_A 419 ELPGFVNY--RTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLI 496 (608)
T ss_dssp SSSCSSCT--HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566776 88888887777666654333333333333332222222223322223333 3322 33355566666
Q ss_pred HHHhc
Q 015133 249 EHLLD 253 (412)
Q Consensus 249 ~~Ll~ 253 (412)
..+.+
T Consensus 497 ~~li~ 501 (608)
T 3szr_A 497 RLHFQ 501 (608)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 48
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.82 E-value=3.5e+02 Score=22.10 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccchhhHHHHHHHHHHHHHHHhhhHHHHHHH
Q 015133 183 FRALESCLESACRCLDSETRTLEEEAYPALDELTT-KISTLNLERVRQIKSRLVAINGRVQKVRDEI 248 (412)
Q Consensus 183 l~~LE~il~~~~~~Le~~~~~le~~~~~ild~l~~-~~~~~~L~~L~~lk~~L~~l~~~v~~vre~l 248 (412)
+.-+-.=|...|..++..+++|++.+.-+...-.+ +++. ..|.+-|+-+..++..|..+++.|
T Consensus 65 ~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~---~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 65 LDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPA---GDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666788888888888887765433211 1222 234444555666777777666654
No 49
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=20.21 E-value=70 Score=28.58 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCeeEEEehhh--------hhHHhcCCCchhhh-hhcC
Q 015133 27 LRTWLVVSESGQSRVEEVGKH--------VIMRRTGLPARDLR-VLDP 65 (412)
Q Consensus 27 ~~~w~~id~~g~~~~~~~~k~--------~l~~~~gL~~RDLr-~Ld~ 65 (412)
..-=++|..+|+...+.+.++ ..|++.|++++.+| ++|-
T Consensus 56 e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDG 103 (207)
T 3tix_A 56 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDG 103 (207)
T ss_dssp CEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETT
T ss_pred CcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECC
Confidence 344444555776555554433 34556689888888 6653
No 50
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=20.04 E-value=15 Score=31.84 Aligned_cols=53 Identities=15% Similarity=0.339 Sum_probs=33.6
Q ss_pred CCceEEEEEcCCCCeeEEEehhhhhHHhc-CCCchhhhhhcCCCCCCceEeeeCCeEEEecccce
Q 015133 25 MGLRTWLVVSESGQSRVEEVGKHVIMRRT-GLPARDLRVLDPLLSYPSSILGRERAIVINLEHIK 88 (412)
Q Consensus 25 ~~~~~w~~id~~g~~~~~~~~k~~l~~~~-gL~~RDLr~Ld~~~s~~~~I~~R~~~Ilvnle~ir 88 (412)
...|.|.+||+.|..--. +. +.+++.+ |-| -| .+.|.+.+=+..||||-+.|.
T Consensus 31 ~~~r~W~VIDA~g~~LGR-LA-s~VAk~L~GKh-------KP--~ytP~~D~GD~VVVINaekI~ 84 (163)
T 3f1f_N 31 QVEPRWVLIDAEGKTLGR-LA-TKIATLLRGKH-------RP--DWTPNVAMGDFVVVVNADKIR 84 (163)
T ss_dssp CCCCCBCBBCCTTCBHHH-HH-HHHHHHHSCTT-------ST--TCCTTTCCCCBCEECCGGGCB
T ss_pred cccCcEEEEeCCCCchHH-HH-HHHHHHHhcCC-------CC--ccCCcccCCCEEEEEeCcccc
Confidence 468999999999873221 00 1222221 211 24 677888998999999998653
Done!