BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015136
         (412 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Xylose
 pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Glucose
 pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To
           6-Bromo-6-Deoxy-D-Glucose
          Length = 491

 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 104/232 (44%), Gaps = 45/232 (19%)

Query: 25  LVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFA---GNLVGVYLWG 81
           L+F Y   AV +  +E +   F+ P   SE     +A SLL   V +   G ++G  L G
Sbjct: 22  LLFGY-DTAVISGTVESLNTVFVAPQNLSE----SAANSLLGFCVASALIGCIIGGALGG 76

Query: 82  LLSDNYGRKKGFLGIAMI---TSGIGL------LSAFSPNYISLVTLRGLV--------- 123
             S+ +GR+   L IA +    SG+G        ++ +P+    V L G V         
Sbjct: 77  YCSNRFGRRDS-LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII 135

Query: 124 -GIGIGSGPVFSAWFL-EFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIV---------- 171
            GIG+G   + S  ++ E  PA  RG  +V F+ F     IF   L + V          
Sbjct: 136 GGIGVGLASMLSPMYIAELAPAHIRGK-LVSFNQF---AIIFGQLLVYCVNYFIARSGDA 191

Query: 172 --MITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKI 221
             + T  WR++ A   IP+   L+L    PESPR+L  +G+  +A  IL KI
Sbjct: 192 SWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI 243


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,498,144
Number of Sequences: 62578
Number of extensions: 386604
Number of successful extensions: 1028
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1026
Number of HSP's gapped (non-prelim): 5
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)