Query 015136
Match_columns 412
No_of_seqs 344 out of 1432
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 07:19:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 7E-36 2.4E-40 283.6 25.7 354 21-412 8-401 (491)
2 3o7q_A L-fucose-proton symport 100.0 6.8E-35 2.3E-39 272.7 28.4 325 20-412 21-378 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 7E-35 2.4E-39 273.6 20.7 341 20-412 23-377 (451)
4 2gfp_A EMRD, multidrug resista 100.0 5.3E-31 1.8E-35 241.2 10.7 312 28-411 3-321 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 6E-29 2.1E-33 235.8 21.7 356 32-412 20-417 (491)
6 2cfq_A Lactose permease; trans 99.9 4.7E-25 1.6E-29 204.4 10.8 314 40-412 22-343 (417)
7 2xut_A Proton/peptide symporte 99.9 9.4E-24 3.2E-28 201.7 16.9 163 35-197 22-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 1.9E-14 6.6E-19 134.4 17.1 169 30-198 257-433 (451)
9 2cfq_A Lactose permease; trans 99.5 2.2E-14 7.5E-19 132.6 11.5 144 59-202 258-404 (417)
10 3o7q_A L-fucose-proton symport 99.5 7.4E-13 2.5E-17 123.1 18.2 151 41-194 274-428 (438)
11 4gc0_A D-xylose-proton symport 99.4 3E-12 1E-16 120.9 15.1 175 28-202 280-467 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.3 2.9E-12 1E-16 121.0 8.8 155 42-197 300-470 (491)
13 2gfp_A EMRD, multidrug resista 99.1 1.1E-11 3.7E-16 112.8 1.7 153 30-185 204-363 (375)
14 2xut_A Proton/peptide symporte 98.8 2.2E-09 7.7E-14 102.1 5.1 135 61-195 336-499 (524)
15 2g9p_A Antimicrobial peptide l 68.2 3.4 0.00012 19.2 1.7 14 79-92 2-15 (26)
16 4dve_A Biotin transporter BIOY 29.9 1.2E+02 0.0043 23.8 6.0 25 66-90 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=7e-36 Score=283.56 Aligned_cols=354 Identities=20% Similarity=0.253 Sum_probs=258.3
Q ss_pred ccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCC--------CcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhH
Q 015136 21 KFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGV--------SPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKG 92 (412)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 92 (412)
++.+.+.++.+++.+..++|...++...|.+.++++. +.++.|++.+++.+|..+|++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4556666777888899999999999999999888753 23567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh------------------cchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHH
Q 015136 93 FLGIAMITSGIGLLSA------------------FSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIF 153 (412)
Q Consensus 93 ~~~~~~~~~i~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~ 153 (412)
++++.+++.++.++++ .++|++.++++|+++|++.|.. +....+++|+.|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999887 4789999999999999999998 88999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhh
Q 015136 154 STFWTLGSIFEAALAWIVMIT--------LNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLN 225 (412)
Q Consensus 154 ~~~~~~g~~~~~~~~~~l~~~--------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (412)
+.+..+|.++++.++..+... .+||+.+.+..++.++..+..++.||+|+|+..+++.+++++..++....+
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 999999999999988877643 348888888888888888888899999999999999999988877765433
Q ss_pred CCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015136 226 KAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMT 305 (412)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (412)
....+..+ .+....+.+.. ......++.+ +.........+......+....+.
T Consensus 248 ~~~~~~~~------------------------~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 300 (491)
T 4gc0_A 248 LATQAVQE------------------------IKHSLDHGRKT-GGRLLMFGVG--VIVIGVMLSIFQQFVGINVVLYYA 300 (491)
T ss_dssp HHHHHHHH------------------------HHHHHHHHHHH-TTHHHHSCCT--HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhHHHHHH------------------------HHHHHHhhhhh-hhHHHHhccc--HHHHHHHHHHHHHHhhhhHHHhcc
Confidence 21100000 00000000000 0111112221 112222222222333334444444
Q ss_pred hcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhh----hhh
Q 015136 306 SKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAML----QSN 381 (412)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~----~~~ 381 (412)
+.+.+. .+.+...........++..+++.++++++.||+|||+.++.+.....++.+.+... ...
T Consensus 301 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~ 369 (491)
T 4gc0_A 301 PEVFKT-----------LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG 369 (491)
T ss_dssp HHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred hHHHHh-----------cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccch
Confidence 444422 23555566667778888999999999999999999999999988888887766541 112
Q ss_pred HH-HHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136 382 IL-ITGLLVGARMFAFGAFTIACIFTPEQLGW 412 (412)
Q Consensus 382 ~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~P~ 412 (412)
.. .....+....+..+..++.+.+.+|++|+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt 401 (491)
T 4gc0_A 370 IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN 401 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH
Confidence 22 22223333334455668899999999996
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=6.8e-35 Score=272.69 Aligned_cols=325 Identities=13% Similarity=0.063 Sum_probs=256.9
Q ss_pred CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136 20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI 99 (412)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 99 (412)
+++++..+..+++..+..+++....++..|.+.+++|.|.++.|++.+.+.+++.+++++.|+++||+|||++++++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 44556667777788888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh---hcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-hc
Q 015136 100 TSGIGLLS---AFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM-IT 174 (412)
Q Consensus 100 ~~i~~~~~---~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~ 174 (412)
.+++.+++ .++++++.++++|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|..+++.+++.+. +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999998 88899999999999999999998 888999999999999999999999999999999999999998 55
Q ss_pred CC-------------------------hHHHHHHHHHHHHHHHHHHHhc--cCCchhhhhcCChHHHHHHHHHHHHhhCC
Q 015136 175 LN-------------------------WRWLLALSSIPSFAVLLLYSLA--PESPRYLNVKGRTTEARNILDKIALLNKA 227 (412)
Q Consensus 175 ~~-------------------------w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (412)
.+ ||+.|++.+++.++..+..++. ||+++.. +++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~---------------- 241 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSD---------------- 241 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CCC----------------
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---ccc----------------
Confidence 54 9999988877666554444443 3322100 000
Q ss_pred CCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 015136 228 KLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSK 307 (412)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (412)
+++ ++...+++++++++..+... ...+.....++....+.+.
T Consensus 242 ----------------------~~~-------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 283 (438)
T 3o7q_A 242 ----------------------AKQ-------------GSFSASLSRLARIRHWRWAV---LAQFCYVGAQTACWSYLIR 283 (438)
T ss_dssp ----------------------SST-------------TSHHHHHHHHTTCSHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------ccc-------------cchhhhHHHHHhChHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 000 00001444555554443333 3333344455566666676
Q ss_pred c-cccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 015136 308 L-SSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITG 386 (412)
Q Consensus 308 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 386 (412)
| .++. .|.++.+.+.......++.++++++.|++.||+|||+.+..+.++.+++.+++.+.++.+. ..
T Consensus 284 ~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 352 (438)
T 3o7q_A 284 YAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-LI 352 (438)
T ss_dssp HHHHHS----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH-HH
T ss_pred Hhhhcc----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH-HH
Confidence 6 5332 3688889999999999999999999999999999999999999988888887777665544 34
Q ss_pred HHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136 387 LLVGARMFAFGAFTIACIFTPEQLGW 412 (412)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~e~~P~ 412 (412)
..++.+++.+..++...++..|.+|+
T Consensus 353 ~~~~~g~~~~~~~~~~~~~~~~~~~~ 378 (438)
T 3o7q_A 353 ALTLCSAFMSIQYPTIFSLGIKNLGQ 378 (438)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45677788888899999998888874
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=7e-35 Score=273.61 Aligned_cols=341 Identities=13% Similarity=0.157 Sum_probs=263.8
Q ss_pred CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136 20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI 99 (412)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 99 (412)
++.++..+..+++..+....+...+++..|.+.+++ .+.++.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 345677788888888999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc----chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015136 100 TSGIGLLSAF----SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMIT 174 (412)
Q Consensus 100 ~~i~~~~~~~----~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 174 (412)
.+++.+++++ +++++.++++|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|.+++|.+++.+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999988 88899999999999999999999999999999999999998888
Q ss_pred CC-hHHHHHHHHHHHHHH-HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCC
Q 015136 175 LN-WRWLLALSSIPSFAV-LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNT 252 (412)
Q Consensus 175 ~~-w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
.| ||+.|++.+++.++. ++.++++||+|+....+++++. . .+.+++.+ .+.+
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-----~~~~~~~~-----~~~~ 235 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY----------------K-----NDYPDDYN-----EKAE 235 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT----------------C-----CC---------------
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh----------------c-----ccccccch-----hhhh
Confidence 98 999999998877765 4456778887653211110000 0 00000000 0000
Q ss_pred Ccccchhhhhhhhcccccc--hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcch
Q 015136 253 PLLTSSRIRITKLKSGFSS--FLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSL 330 (412)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (412)
.+.+.++ .+++++++. ++...+..+.....+++...+.|.+.++. .|.++.+.
T Consensus 236 ------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~ 290 (451)
T 1pw4_A 236 ------------QELTAKQIFMQYVLPNKL---LWYIAIANVFVYLLRYGILDWSPTYLKEV----------KHFALDKS 290 (451)
T ss_dssp ---------------CCTHHHHHHTSSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHBTTB----------SCCCHHHH
T ss_pred ------------cccccccchHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHH
Confidence 0000001 233444333 33444444555566667777788777442 46888889
Q ss_pred HHHHHHHHcchhhHHHHHHHHHHhh--chhhHHHHHHHHHH-HHHHHHHhh--hhhHHHHHHHHHHHHHHhhHhHHHHhh
Q 015136 331 YLSVFLASLGELPGLVLAGIIVDRA--GRKLSLTIMLILVF-ICILPLAML--QSNILITGLLVGARMFAFGAFTIACIF 405 (412)
Q Consensus 331 ~~~~~~~~~~~~~g~~~~g~l~dr~--grr~~l~~~~~~~~-~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (412)
+.......++.++++++.|++.||+ +||+.+..+..+.. ++.+.+.+. .+.+...+..++.+++.+...+....+
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 370 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH 370 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 9999999999999999999999999 99998888777766 565555554 245556666777888888888888899
Q ss_pred ccCCCCC
Q 015136 406 TPEQLGW 412 (412)
Q Consensus 406 ~~e~~P~ 412 (412)
..|.+|+
T Consensus 371 ~~~~~~~ 377 (451)
T 1pw4_A 371 ALELAPK 377 (451)
T ss_dssp HHHTSCT
T ss_pred HHHHhch
Confidence 9998885
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=5.3e-31 Score=241.20 Aligned_cols=312 Identities=13% Similarity=0.066 Sum_probs=238.1
Q ss_pred HHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHh
Q 015136 28 AYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLS 107 (412)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 107 (412)
..+++..+....+...+.+..|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 44566677788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015136 108 AFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSI 186 (412)
Q Consensus 108 ~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~ 186 (412)
.++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV 162 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999988 88889999999999999999999999999999999999999888899999998887
Q ss_pred HHHHHHH-HHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhh
Q 015136 187 PSFAVLL-LYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKL 265 (412)
Q Consensus 187 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (412)
..++..+ ..+++||+++...++ + +
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~--~--------------- 187 (375)
T 2gfp_A 163 LCAGVTFSMARWMPETRPVDAPR--------------------------------------T--R--------------- 187 (375)
T ss_dssp HHHHHHCCCCCSSCCCSTTTCCC--------------------------------------C--C---------------
T ss_pred HHHHHHHHHHHHCcccCCCCccc--------------------------------------c--c---------------
Confidence 7766654 445566654310000 0 0
Q ss_pred cccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHH
Q 015136 266 KSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGL 345 (412)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 345 (412)
..++++++++++. .+......+......+....+.|.+.++. .|.++.+.+.......++.++++
T Consensus 188 --~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~g~~~~~~~~~~~~~~ 252 (375)
T 2gfp_A 188 --LLTSYKTLFGNSG---FNCYLLMLIGGLAGIAAFEACSGVLMGAV----------LGLSSMTVSILFILPIPAAFFGA 252 (375)
T ss_dssp --TTTCSTHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCSCSSHHH----------HHHHHHHHHHHHHTHHHHHHHHH
T ss_pred --HHHHHHHHhcCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHHH
Confidence 0002333343332 33333444445556666667777666432 46777888999999999999999
Q ss_pred HHHHHHHHhhchhhHHHHHHHH-HHHHHH--HHHh--hhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136 346 VLAGIIVDRAGRKLSLTIMLIL-VFICIL--PLAM--LQSNILITGLLVGARMFAFGAFTIACIFTPEQLG 411 (412)
Q Consensus 346 ~~~g~l~dr~grr~~l~~~~~~-~~~~~~--~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P 411 (412)
++.+++.||.+++. ..+..+ ...+.. .+.. .++.+...+..++.+++.+...+...++..|.+|
T Consensus 253 ~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 321 (375)
T 2gfp_A 253 WFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP 321 (375)
T ss_dssp HHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99999999998832 222222 222222 2222 2244445556667777777778888888877665
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=6e-29 Score=235.82 Aligned_cols=356 Identities=11% Similarity=-0.026 Sum_probs=221.1
Q ss_pred HHHHHHhhHHHhhh-hhhhhhhhh-----cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHH
Q 015136 32 LAVFAEAMEIMILS-FIGPAVKSE-----WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDN-YGRKKGFLGIAMITSGIG 104 (412)
Q Consensus 32 ~~~~~~~~~~~~~~-~~~~~~~~~-----~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~ 104 (412)
+..+...+...... ...+.+.++ +|.|.++.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~ 99 (491)
T 4aps_A 20 MTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGH 99 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 33444444444443 334445555 99999999999999999999999999999999 899999999999999999
Q ss_pred HHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 015136 105 LLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAK--RGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLL 181 (412)
Q Consensus 105 ~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~ 181 (412)
+++++++|++.++++|++.|++.+.. +...++++|++|+++ |+.++++++.+.++|..++|.+++.+.++.|||+.|
T Consensus 100 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f 179 (491)
T 4aps_A 100 IVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAF 179 (491)
T ss_dssp HHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999999999999999988 888999999999988 777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc-cCCchh----hhhcCChHHHHHHHHH-------------HHHhhCCCCCCCccccccCCCCC
Q 015136 182 ALSSIPSFAVLLLYSLA-PESPRY----LNVKGRTTEARNILDK-------------IALLNKAKLPNGMLVSDATSRPD 243 (412)
Q Consensus 182 ~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 243 (412)
++.++..++..+..++. ++..+. ..++.+.++.++..+. .....+.... +....... ...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~ 257 (491)
T 4aps_A 180 SLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSL-PAYINLLT-IVA 257 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCT-THHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccc-ccchhhhh-HHH
Confidence 99877666554443322 221110 0011112222222111 0001110000 00000000 000
Q ss_pred cccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccc
Q 015136 244 EELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQ 323 (412)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (412)
.... ........+....+..+ ++............+.....+.......+.+..+. .
T Consensus 258 ---------~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 314 (491)
T 4aps_A 258 ---------IAIP-VFYFAWMISSVKVTSTE---HLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER----------V 314 (491)
T ss_dssp ---------HHHH-HHHHHHHC---------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS----------C
T ss_pred ---------HHHH-HHHHHHHhhcccccHHH---HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH----------h
Confidence 0000 00000000000000000 00001111122222222223333333344443222 2
Q ss_pred CCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHH-----HHHHHHHHHHHHHHhhh---------hhHHHHHHHH
Q 015136 324 SMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLT-----IMLILVFICILPLAMLQ---------SNILITGLLV 389 (412)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~-----~~~~~~~~~~~~l~~~~---------~~~~~~~~~~ 389 (412)
+.+....+.......++.+++.++.+++.||++||+... .+..+.+++.+.+.... +.+......+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA 394 (491)
T ss_dssp CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence 344456677777788888899999999999999886544 66666666666555422 4455666677
Q ss_pred HHHHHHhhHhHHHHhhccCCCCC
Q 015136 390 GARMFAFGAFTIACIFTPEQLGW 412 (412)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~e~~P~ 412 (412)
+.+++.+...+..++++.|.+|+
T Consensus 395 l~g~~~~~~~~~~~~~~~~~~p~ 417 (491)
T 4aps_A 395 LVILGEMLISPVGLSVTTKLAPK 417 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHTTT
T ss_pred HHHHHHHHHhHHHHHHHHHhCCH
Confidence 77888777788889999998885
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.92 E-value=4.7e-25 Score=204.35 Aligned_cols=314 Identities=15% Similarity=0.075 Sum_probs=190.8
Q ss_pred HHHhhhhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH---HHhhcchhHH-
Q 015136 40 EIMILSFIGPA-VKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIG---LLSAFSPNYI- 114 (412)
Q Consensus 40 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~---~~~~~~~~~~- 114 (412)
......+..|. +.+++|.|+.+.|++.+.+.+++.++++++|+++||+|||++++++..+.+++. ....+.+...
T Consensus 22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2cfq_A 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555 556799999999999999999999999999999999999999998888775532 1112222211
Q ss_pred HHHHHHHHHhhhcCcc-ccceeeeeecccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015136 115 SLVTLRGLVGIGIGSG-PVFSAWFLEFVPA--AKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAV 191 (412)
Q Consensus 115 ~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~ 191 (412)
.+...+.+.|++.+.. +.....+.++.++ ++|+...+.......+|..++|.+++.+.+ .+||+.|++.++..++.
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALIL 180 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHH
Confidence 2344566666665554 3333334444433 456777888888889999999999999887 58999998877665444
Q ss_pred HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccc
Q 015136 192 LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSS 271 (412)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (412)
.+..++.+|+++. +.+.+ +.+++ + +++ .+..+
T Consensus 181 ~~~~~~~~~~~~~---~~~~~----------------------------~~~~~-~--~~~--------------~~~~~ 212 (417)
T 2cfq_A 181 AVLLFFAKTDAPS---SATVA----------------------------NAVGA-N--HSA--------------FSLKL 212 (417)
T ss_dssp HHHSCSSCCCCSC---SSCSS----------------------------SSSSS-C--CCC--------------CCHHH
T ss_pred HHHHHHcCccccc---ccccc----------------------------ccccc-c--ccc--------------ccHHH
Confidence 4444444433210 00000 00000 0 000 00012
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHH
Q 015136 272 FLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGII 351 (412)
Q Consensus 272 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l 351 (412)
++++++++..+...... +.....++....+.|.|..+.. +..+.+....+.......++.+++.++.|++
T Consensus 213 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l 282 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYV---IGVSCTYDVFDQQFANFFTSFF-------ATGEQGTRVFGYVTTMGELLNASIMFFAPLI 282 (417)
T ss_dssp HHHHTTCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTS-------SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHH-------hccCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333322221 1112222233233444432210 0011234455677777778889999999999
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136 352 VDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW 412 (412)
Q Consensus 352 ~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~ 412 (412)
+||+|||+.+..+..+.+++.+.+.+.++.+...+...+.+++.....+....+++|.+|+
T Consensus 283 ~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~ 343 (417)
T 2cfq_A 283 INRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV 343 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 9999999999988888888777766655555555554555555555556667888888873
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.91 E-value=9.4e-24 Score=201.75 Aligned_cols=163 Identities=13% Similarity=0.152 Sum_probs=140.9
Q ss_pred HHHhhHHHhhhh-hhhhhhhhcC------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHHHHHHHHH
Q 015136 35 FAEAMEIMILSF-IGPAVKSEWG------VSPSAESLLSTVVFAGNLVGVYLWGLLSDNY-GRKKGFLGIAMITSGIGLL 106 (412)
Q Consensus 35 ~~~~~~~~~~~~-~~~~~~~~~~------~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~ 106 (412)
+......+.... ..+.+.+++| .+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.++
T Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (524)
T 2xut_A 22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAF 101 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 333333333333 3445677899 9999999999999999999999999999999 9999999999999999999
Q ss_pred hhcch-hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHH---HHHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 015136 107 SAFSP-NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVI---FSTFWTLGSIFEAALAWIVMITLNWRWLL 181 (412)
Q Consensus 107 ~~~~~-~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~l~~~~~w~~~~ 181 (412)
.++++ +++.+++.|++.|++.+.. +...+++.|++|+++|+++.+. .+.+.++|..++|.+++.+.+..+||+.|
T Consensus 102 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 102 LAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 99998 9999999999999999998 8889999999999999877666 89999999999999999999989999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 015136 182 ALSSIPSFAVLLLYSL 197 (412)
Q Consensus 182 ~~~~~~~~~~~~~~~~ 197 (412)
++.+++.++..+..++
T Consensus 182 ~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 182 GIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988776665554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.60 E-value=1.9e-14 Score=134.38 Aligned_cols=169 Identities=15% Similarity=0.053 Sum_probs=140.4
Q ss_pred HHHHHHHHhhHHHhhhhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHH-HHHH
Q 015136 30 AGLAVFAEAMEIMILSFIGPAVKSE-WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNY--GRKKGFLGIAMITS-GIGL 105 (412)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-i~~~ 105 (412)
..+..+.............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (451)
T 1pw4_A 257 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI 336 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 3344444455555566667777666 899999999999999999999999999999999 99999988887776 6666
Q ss_pred Hhhcc--hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHH-HHHHHHHHHHHHHhcCChHHHH
Q 015136 106 LSAFS--PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTL-GSIFEAALAWIVMITLNWRWLL 181 (412)
Q Consensus 106 ~~~~~--~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~w~~~~ 181 (412)
+..+. .+.+.+.+..++.|++.+.. +....++.|..|+++|+++.|+.+....+ |..++|.+.+.+.+..||+..|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 416 (451)
T 1pw4_A 337 VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 416 (451)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 66665 36777888888999988877 77778999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 015136 182 ALSSIPSFAVLLLYSLA 198 (412)
Q Consensus 182 ~~~~~~~~~~~~~~~~~ 198 (412)
++.+++.++..+..++.
T Consensus 417 ~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 417 MVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888777665554443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.54 E-value=2.2e-14 Score=132.62 Aligned_cols=144 Identities=15% Similarity=0.085 Sum_probs=120.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeee
Q 015136 59 PSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWF 137 (412)
Q Consensus 59 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i 137 (412)
....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+.. +....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888899999999999999999999999999888888877777788888888888888876655 5667899
Q ss_pred eecccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-HHhccCCc
Q 015136 138 LEFVPAAKRGMWMVI-FSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLL-YSLAPESP 202 (412)
Q Consensus 138 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~ 202 (412)
.|.+|++.||++.++ .+....+|..++|.+++.+.++.|++..|.+.+++.++..+. +...+|++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999998 588888999999999999999889999998888777766554 34455544
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.50 E-value=7.4e-13 Score=123.13 Aligned_cols=151 Identities=12% Similarity=0.052 Sum_probs=123.8
Q ss_pred HHhhhhhhhhh-hhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 015136 41 IMILSFIGPAV-KSE-WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVT 118 (412)
Q Consensus 41 ~~~~~~~~~~~-~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 118 (412)
........|.+ .++ +|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.+..
T Consensus 274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (438)
T 3o7q_A 274 QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA 353 (438)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 34444455555 444 5999999999999999999999999999999999999999999999999888888887766554
Q ss_pred HHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHH
Q 015136 119 LRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN-WRWLLALSSIPSFAVLLL 194 (412)
Q Consensus 119 ~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~~~~~~~~~~~~~ 194 (412)
. ++.|++.+.. +...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..| ++..|++.++..++..+.
T Consensus 354 ~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 354 L-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp H-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 4 7888888887 88888888999866 888888877 566999999999999999888 999988766554444333
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.41 E-value=3e-12 Score=120.95 Aligned_cols=175 Identities=19% Similarity=0.164 Sum_probs=129.1
Q ss_pred HHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHh
Q 015136 28 AYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLS 107 (412)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 107 (412)
.......+.............+.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l 359 (491)
T 4gc0_A 280 IGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSL 359 (491)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHH
Confidence 33344444445555666677888999999888888888888889999999999999999999999999888888777655
Q ss_pred hcc-----hhHHH-HHHHHHHHhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh------cC
Q 015136 108 AFS-----PNYIS-LVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI------TL 175 (412)
Q Consensus 108 ~~~-----~~~~~-~~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~ 175 (412)
+.. ++... ..+.-+..+++.+..++...+.+|.+|.+.|++++|+......+|..+++.+.+.+.+ ..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~ 439 (491)
T 4gc0_A 360 GTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHF 439 (491)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 432 12222 2222333444444446777899999999999999999999999999998887766543 34
Q ss_pred ChHHHHHHHHHHHHHH-HHHHHhccCCc
Q 015136 176 NWRWLLALSSIPSFAV-LLLYSLAPESP 202 (412)
Q Consensus 176 ~w~~~~~~~~~~~~~~-~~~~~~~~~~~ 202 (412)
++.+.|++.++++++. ++.++++||++
T Consensus 440 ~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 440 HNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred hhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 5666777777776666 44578899984
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.31 E-value=2.9e-12 Score=121.03 Aligned_cols=155 Identities=15% Similarity=-0.014 Sum_probs=120.6
Q ss_pred Hhhhhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHH-----HHHHHHHHHHHHhhcch----
Q 015136 42 MILSFIGPAVK-SEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFL-----GIAMITSGIGLLSAFSP---- 111 (412)
Q Consensus 42 ~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-----~~~~~~~i~~~~~~~~~---- 111 (412)
.......|.+. +.++.+..+.++..+...++..++.++.+++.||+|||+... .+.++.+++.++.....
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
T 4aps_A 300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG 379 (491)
T ss_dssp GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC
T ss_pred hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444455444 446777678888899999999999999999999999987655 77777777776665533
Q ss_pred -----hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 015136 112 -----NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSS 185 (412)
Q Consensus 112 -----~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~ 185 (412)
+.+.+.+..++.|++.+.. +....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+ .++...|.+.+
T Consensus 380 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~ 458 (491)
T 4aps_A 380 TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFG 458 (491)
T ss_dssp CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 6777788889999999887 8888999999999999999999999999999999999888766 46677777777
Q ss_pred HHHHHHHHHHHh
Q 015136 186 IPSFAVLLLYSL 197 (412)
Q Consensus 186 ~~~~~~~~~~~~ 197 (412)
+..++..+..++
T Consensus 459 ~~~~~~~~~~~~ 470 (491)
T 4aps_A 459 LGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666655444333
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.12 E-value=1.1e-11 Score=112.79 Aligned_cols=153 Identities=16% Similarity=0.114 Sum_probs=116.1
Q ss_pred HHHHHHHHhhHHHhhhhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH-HHHHHHH-
Q 015136 30 AGLAVFAEAMEIMILSFIGPAVKSE-WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI-TSGIGLL- 106 (412)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~-~~i~~~~- 106 (412)
..+..+.............|.+.++ +|.++.+.+++.+...++..++.++.+++.||+|+| +..+..+ ...+...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~ 281 (375)
T 2gfp_A 204 YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMW 281 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3344444445555566666766555 899999999999999999999999999999999883 3333333 2222221
Q ss_pred -hhc--chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 015136 107 -SAF--SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLA 182 (412)
Q Consensus 107 -~~~--~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~ 182 (412)
... .++.+.+.+..++.|++.+.. +...+++.|..| ++|+++.++.+....+|..++|.+.+.+.+..+|+..+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~ 360 (375)
T 2gfp_A 282 IPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLL 360 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHH
T ss_pred HHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 111 236677778888999998887 888899999998 899999999999999999999999999988777887776
Q ss_pred HHH
Q 015136 183 LSS 185 (412)
Q Consensus 183 ~~~ 185 (412)
+.+
T Consensus 361 ~~~ 363 (375)
T 2gfp_A 361 MTL 363 (375)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.82 E-value=2.2e-09 Score=102.07 Aligned_cols=135 Identities=9% Similarity=0.009 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH----hhhcc----hhHHHHHHHHHHHHHHHhhcc---------hhHHHHHHHHHHH
Q 015136 61 AESLLSTVVFAGNLVGVYLWGLLS----DNYGR----KKGFLGIAMITSGIGLLSAFS---------PNYISLVTLRGLV 123 (412)
Q Consensus 61 ~~~~~~s~~~~~~~i~~~~~g~l~----dr~Gr----r~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~r~l~ 123 (412)
..+++.+...++..++.++.+++. ||.|+ ++.+.++.++.+++.++.++. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666667777777777664 55543 356677888888887776653 3677778888999
Q ss_pred hhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC--Ch---------HHHHHHHHHHHHHH
Q 015136 124 GIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL--NW---------RWLLALSSIPSFAV 191 (412)
Q Consensus 124 G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~w---------~~~~~~~~~~~~~~ 191 (412)
|++.+.. +...+++.|..|+++||+++|+.+....+|..++|.+.+.+.+.. +| +..|++.+.+.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 9999887 888899999999999999999999999999999999999887632 23 33366666555555
Q ss_pred HHHH
Q 015136 192 LLLY 195 (412)
Q Consensus 192 ~~~~ 195 (412)
.+..
T Consensus 496 ~~~~ 499 (524)
T 2xut_A 496 AIVF 499 (524)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=68.17 E-value=3.4 Score=19.20 Aligned_cols=14 Identities=43% Similarity=0.722 Sum_probs=11.4
Q ss_pred HHHHHHhhhcchhH
Q 015136 79 LWGLLSDNYGRKKG 92 (412)
Q Consensus 79 ~~g~l~dr~Grr~~ 92 (412)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=29.95 E-value=1.2e+02 Score=23.76 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcch
Q 015136 66 STVVFAGNLVGVYLWGLLSDNYGRK 90 (412)
Q Consensus 66 ~s~~~~~~~i~~~~~g~l~dr~Grr 90 (412)
+.-|.+|+.+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3567888899999999999997644
Done!