BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015139
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 599 bits (1544), Expect = e-171, Method: Compositional matrix adjust.
Identities = 285/407 (70%), Positives = 329/407 (80%), Gaps = 5/407 (1%)
Query: 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++
Sbjct: 1 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 60
Query: 62 SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PR
Sbjct: 61 SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 120
Query: 122 LIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKT--ELEVYNFTGEGGVA 179
L+PGWTKPI IGRHA GDQY+ATD V+ G K+VF KD + + EVYNF GGV
Sbjct: 121 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVG 179
Query: 180 LSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 239
+ MYNTDESI FA + A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F
Sbjct: 180 MGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDF 239
Query: 240 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 299
+ IWYEHRLIDDMVA LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPD
Sbjct: 240 DKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPD 299
Query: 300 GKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKL 359
GKTIEAEAAHGTVTRHYR HQKG TSTN IASIFAW+RGL HR KLD N L+ F + L
Sbjct: 300 GKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTL 359
Query: 360 EAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 404
E C+ TVESG MTKDLA IHG + EH+LNT +F+D + +L
Sbjct: 360 EKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 406
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMJ|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMV|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
pdb|2CMV|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
Length = 410
Score = 580 bits (1495), Expect = e-166, Method: Compositional matrix adjust.
Identities = 273/401 (68%), Positives = 327/401 (81%), Gaps = 3/401 (0%)
Query: 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNV 71
+VEM GDEMTR+ W+ IK+KLI P++ELD+ +DLG+ NRDAT+D+VT ++AEA KYNV
Sbjct: 7 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 66
Query: 72 AIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPIC 131
+KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI
Sbjct: 67 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPII 126
Query: 132 IGRHAFGDQYRATDTVIQGPGKLKLVFEGKD--EKTELEVYNFTGEGGVALSMYNTDESI 189
IGRHA+GDQYRATD V+ GPGK+++ + KD +K V++F GGVA+ MYN D+SI
Sbjct: 127 IGRHAYGDQYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGMYNQDKSI 186
Query: 190 RAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR 249
FA +S A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA I YEHR
Sbjct: 187 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFEAQNICYEHR 246
Query: 250 LIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH 309
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAH
Sbjct: 247 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAH 306
Query: 310 GTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVES 369
GTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN L F + LE CI T+E+
Sbjct: 307 GTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEA 366
Query: 370 GKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 409
G MTKDLA I G + R YLNT EF+D + ++L+A+L+
Sbjct: 367 GFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 407
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T09|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T0L|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|D Chain D, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
Length = 414
Score = 579 bits (1492), Expect = e-165, Method: Compositional matrix adjust.
Identities = 272/401 (67%), Positives = 325/401 (81%), Gaps = 3/401 (0%)
Query: 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNV 71
+VEM GDEMTR+ W+ IK+KLIFP++ELD+ +DLG+ NRDAT+D+VT ++AEA K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 72 AIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPIC 131
+KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 132 IGRHAFGDQYRATDTVIQGPGKLKLVFEGKD--EKTELEVYNFTGEGGVALSMYNTDESI 189
IGRHA+GDQYRATD V+ GPGK+++ + D +K V+NF GGVA+ MYN D+SI
Sbjct: 130 IGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 190 RAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR 249
FA +S A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA IWYEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 249
Query: 250 LIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH 309
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 310 GTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVES 369
GTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN L F LE I T+E+
Sbjct: 310 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEA 369
Query: 370 GKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 409
G MTKDLA I G + R YLNT EF+D + ++L+ +L+
Sbjct: 370 GFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 410
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 419
Score = 578 bits (1491), Expect = e-165, Method: Compositional matrix adjust.
Identities = 272/401 (67%), Positives = 325/401 (81%), Gaps = 3/401 (0%)
Query: 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNV 71
+VEM GDEMTR+ W+ IK+KLIFP++ELD+ +DLG+ NRDAT+D+VT ++AEA K+NV
Sbjct: 15 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 74
Query: 72 AIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPIC 131
+KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI
Sbjct: 75 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 134
Query: 132 IGRHAFGDQYRATDTVIQGPGKLKLVFEGKD--EKTELEVYNFTGEGGVALSMYNTDESI 189
IGRHA+GDQYRATD V+ GPGK+++ + D +K V+NF GGVA+ MYN D+SI
Sbjct: 135 IGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 194
Query: 190 RAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR 249
FA +S A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA IWYEHR
Sbjct: 195 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 254
Query: 250 LIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH 309
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAH
Sbjct: 255 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 314
Query: 310 GTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVES 369
GTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN L F LE I T+E+
Sbjct: 315 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEA 374
Query: 370 GKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 409
G MTKDLA I G + R YLNT EF+D + ++L+ +L+
Sbjct: 375 GFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 415
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
Length = 425
Score = 577 bits (1486), Expect = e-165, Method: Compositional matrix adjust.
Identities = 271/401 (67%), Positives = 324/401 (80%), Gaps = 3/401 (0%)
Query: 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNV 71
+VEM GDEMTR+ W+ IK+KLIFP++ELD+ +DLG+ NRDAT+D+VT ++AEA K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 72 AIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPIC 131
+KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 132 IGRHAFGDQYRATDTVIQGPGKLKLVFEGKD--EKTELEVYNFTGEGGVALSMYNTDESI 189
IG HA+GDQYRATD V+ GPGK+++ + D +K V+NF GGVA+ MYN D+SI
Sbjct: 130 IGHHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 190 RAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR 249
FA +S A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA IWYEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 249
Query: 250 LIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH 309
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 310 GTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVES 369
GTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN L F LE I T+E+
Sbjct: 310 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEA 369
Query: 370 GKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 409
G MTKDLA I G + R YLNT EF+D + ++L+ +L+
Sbjct: 370 GFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 410
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAP|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAR|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAR|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAS|A Chain A, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 422
Score = 577 bits (1486), Expect = e-165, Method: Compositional matrix adjust.
Identities = 271/401 (67%), Positives = 324/401 (80%), Gaps = 3/401 (0%)
Query: 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNV 71
+VEM GDEMTR+ W+ IK+KLIFP++ELD+ +DLG+ NRDAT+D+VT ++AEA K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 72 AIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPIC 131
+KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 132 IGRHAFGDQYRATDTVIQGPGKLKLVFEGKD--EKTELEVYNFTGEGGVALSMYNTDESI 189
IG HA+GDQYRATD V+ GPGK+++ + D +K V+NF GGVA+ MYN D+SI
Sbjct: 130 IGHHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 190 RAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR 249
FA +S A K WPLYLSTKNTILKKYDGRFKDIFQE+Y+ +KS+FEA IWYEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 249
Query: 250 LIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH 309
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 310 GTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVES 369
GTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN L F LE I T+E+
Sbjct: 310 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEA 369
Query: 370 GKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 409
G MTKDLA I G + R YLNT EF+D + ++L+ +L+
Sbjct: 370 GFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA 410
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3US8|B Chain B, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 427
Score = 562 bits (1448), Expect = e-160, Method: Compositional matrix adjust.
Identities = 273/402 (67%), Positives = 323/402 (80%), Gaps = 6/402 (1%)
Query: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAE 64
KIKVANP+VE+DGDE TR+ W+ IKDKLI P+L+LD++Y+DLG+ NRDATDD+VT+++A
Sbjct: 26 KIKVANPVVELDGDEXTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAAN 85
Query: 65 ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIP 124
A K+ V +KCATITPDE RV+EF LK+ WKSPNGTIRNIL G +FREPIICKNVPRL+P
Sbjct: 86 AIKKHGVGVKCATITPDEGRVEEFKLKKXWKSPNGTIRNILGGVIFREPIICKNVPRLVP 145
Query: 125 GWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKT-ELEVYNFTGEGGVALSMY 183
GWTKPI +GRHAFGDQYRATD G GKL + F G+D +T E +VY+ G GVAL+ Y
Sbjct: 146 GWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGEDGQTIEHDVYDAPG-AGVALAXY 204
Query: 184 NTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 243
N DESI FA AS N Q+K P+YLSTKNTILK YDGRFKDIFQ+V++ + ++F+A
Sbjct: 205 NLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKAEK 264
Query: 244 IWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTI 303
+WYEHRLIDD VA ALK GGYVWACKNYDGDVQSD +AQGFGSLGL TSVL PDGKT+
Sbjct: 265 LWYEHRLIDDXVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLXTSVLXTPDGKTV 324
Query: 304 EAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAAC 363
EAEAAHGTVTRHYR HQKG ETSTNSIASIFAW+RGLAHRAKLD NA L F+E LE C
Sbjct: 325 EAEAAHGTVTRHYRQHQKGEETSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVC 384
Query: 364 IGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 405
+ TVESG TKDLAL+I + +L+T F+D + ++LR
Sbjct: 385 VDTVESGFXTKDLALLIG----PDQPWLSTTGFLDKIDENLR 422
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 550 bits (1416), Expect = e-157, Method: Compositional matrix adjust.
Identities = 271/412 (65%), Positives = 319/412 (77%), Gaps = 8/412 (1%)
Query: 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
AF KIKV P+VE+DGDEMTR+ W IK KLI P+L++D+KY+DL + +RDAT DK+T +
Sbjct: 15 AFSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQD 74
Query: 62 SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
+AEA KY V IKCATITPDEARVKEF L +MWKSPNGTIRNIL GTVFREPI+ +PR
Sbjct: 75 AAEAIKKYGVGIKCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPR 134
Query: 122 LIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKTE----LEVYNFTGEGG 177
L+P W KPI IGRHA GDQY+ATDT+I GPG L+LV++ D T L+VY++ G G
Sbjct: 135 LVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKG-SG 193
Query: 178 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKS 237
VA++MYNTDESI FA +S A KK L+LSTKNTILKKYDGRFKDIFQEVYEA +KS
Sbjct: 194 VAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKS 253
Query: 238 KFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVC 297
KFE GI YEHRLIDDMVA +KS+GG++ A KNYDGDVQSD +AQGFGSLGLMTS+LV
Sbjct: 254 KFEQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVT 313
Query: 298 PDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTE 357
PDGKT E+EAAHGTVTRHYR +QKG ETSTNSIASIFAWSRGL R +LDN L F
Sbjct: 314 PDGKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFAN 373
Query: 358 KLEAACIGTVES-GKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 408
LE+A + TV+ G MTKDLAL ++ R Y+ TEEF+DAV L+ +
Sbjct: 374 ILESATLNTVQQDGIMTKDLALACGNNE--RSAYVTTEEFLDAVEKRLQKEI 423
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
pdb|4HCX|B Chain B, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
Length = 409
Score = 548 bits (1411), Expect = e-156, Method: Compositional matrix adjust.
Identities = 263/407 (64%), Positives = 316/407 (77%), Gaps = 6/407 (1%)
Query: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAE 64
KIKV+ P+VE+DGDEMTRV WK IKD LI P+L++ + Y+DLG+ +RDATDD+VT+++A
Sbjct: 6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAY 65
Query: 65 ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIP 124
A K+ V +KCATITPDEARV+EF LK+MW SPNGTIRNIL GT+FREPI+ NVPRL+P
Sbjct: 66 AIKKHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVP 125
Query: 125 GWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKTEL--EVYNFTGEGGVALSM 182
GWTKPI IGRHAFGDQYRAT+ + PG + L F D + E+ + +GGV L M
Sbjct: 126 GWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGM 185
Query: 183 YNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAA 242
YN ESIR FA AS + KWP+YLSTKNTILK YDG FKD F+ VYE +K++FEAA
Sbjct: 186 YNFKESIRDFARASFSYGLNAKWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAA 245
Query: 243 GIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 302
G+ YEHRLIDDMVA LK EGGYVWACKNYDGDVQSD +AQG+GSLGLMTSVL+ DGKT
Sbjct: 246 GLTYEHRLIDDMVAACLKWEGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTADGKT 305
Query: 303 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAA 362
+EAEAAHGTVTRHYR +Q G TSTN IASIFAW+RGL HR KLD ++DF KLE+
Sbjct: 306 VEAEAAHGTVTRHYRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEVIDFAHKLESV 365
Query: 363 CIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 409
I TVESGKMTKDLA++I + +LN+EEF+DA+AD+L L+
Sbjct: 366 VIATVESGKMTKDLAILIG----PEQDWLNSEEFLDAIADNLEKELA 408
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|B Chain B, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|C Chain C, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|D Chain D, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOU|A Chain A, Ctidh Bound To Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 439 bits (1130), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/399 (54%), Positives = 283/399 (70%), Gaps = 6/399 (1%)
Query: 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVES 62
KIK+ P+VEMDGDEMTR+ W+ IK+ L+ P++EL+ +Y+DLGL NRD T+D+VT+++
Sbjct: 1 MSKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDA 60
Query: 63 AEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRL 122
A A KY V +KCATITP+ RV+E+ LK+MWKSPNGTIR IL+GTVFR PI+ ++
Sbjct: 61 ARAIQKYGVGVKCATITPNAQRVEEYNLKKMWKSPNGTIRAILDGTVFRAPIVVNSIKPF 120
Query: 123 IPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKD-EKTELEVYNFTGEGGVALS 181
+ GW KPI I RHA+GD Y+ + + GK +LVF ++ E + ++ F G G V +
Sbjct: 121 VKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENGEVSRQTIHEFDGPG-VIMG 179
Query: 182 MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA 241
M+NTD+SIR+FA A N A L+ STK+TI K YD RFKDIFQE+YE +K KFEA
Sbjct: 180 MHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEA 239
Query: 242 AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK 301
+ Y + LIDD VA ++SEGG VWACKNYDGDV SD +A FGSL +MTSVLV PDGK
Sbjct: 240 KNLQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDGK 299
Query: 302 TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEA 361
E EAAHGTVTRHY H KG ETSTNS+A+IFAW+ L R +LD L+DF KLE
Sbjct: 300 -YEFEAAHGTVTRHYYKHLKGEETSTNSMATIFAWTGALKKRGELDGIKELVDFATKLEQ 358
Query: 362 ACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAV 400
A + T+E+G MTKDLA + S++ + +NTE+F+ +
Sbjct: 359 ASVQTIENGVMTKDLASL---SEVPEKKIVNTEDFLKEI 394
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
pdb|1ZOR|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
Length = 399
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/406 (52%), Positives = 283/406 (69%), Gaps = 7/406 (1%)
Query: 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVES 62
+K+KV NPIVE+DGDEM RV WK IK+KLI P+L++ + YFDLG+ RD TDD++T+E+
Sbjct: 1 MEKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEA 60
Query: 63 AEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRL 122
A+A KY V +KCATITPD RVKE+ LK+ WKSPN TIR L+GTVFR+PI+ KNVP L
Sbjct: 61 AKAIKKYGVGVKCATITPDAERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPL 120
Query: 123 IPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKTELEVYNFTGEGGVALSM 182
+ W KPI IGRHA+GD Y A + ++GP +++LV K+ KT L V+ F G GV ++M
Sbjct: 121 VKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKENKT-LLVHKFEG-NGVVMAM 178
Query: 183 YNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAA 242
+N ++SIR+FA++ +N A +K ++ +TK+TI K Y FKDIFQE + K + E A
Sbjct: 179 HNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKR-KEELEKA 237
Query: 243 GIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 302
G+ Y + LIDD A L+SEGG +WAC NY+GD+ SD +A GFGSLGLMTSVLV PDG
Sbjct: 238 GVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDG-V 296
Query: 303 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAA 362
E EAAHGTV RHY + KG +TSTN ASIFAW+ + R +LD + +F +KLE A
Sbjct: 297 YEFEAAHGTVRRHYYRYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKA 356
Query: 363 CIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 408
I T+ESG +TKDL ++ + Y+ EEFID V +L L
Sbjct: 357 VINTIESGVITKDLQPF---TEPPIDKYVTLEEFIDEVKKNLEKLL 399
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|B Chain B, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|C Chain C, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|D Chain D, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXR|A Chain A, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|2UXR|B Chain B, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|4AOV|A Chain A, Dpidh-Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/401 (48%), Positives = 264/401 (65%), Gaps = 4/401 (0%)
Query: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAE 64
KI++ P+VE+DGDEMTRV W IKDKL+ PF++L +Y+DLG+ RD T+D++T+++AE
Sbjct: 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAE 61
Query: 65 ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIP 124
A KY V +K ATITP++ RV+E+ LK+ WKSPN T+R +L+GTVFR+PI+ KN+ +
Sbjct: 62 AIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVR 121
Query: 125 GWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKTELEVYNFTGEGGVALSMYN 184
W KPI +GRHA+GD Y+ + + GKL++V K+ K + E + ++N
Sbjct: 122 SWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGKETRQTIMEVDEPAIVQGIHN 181
Query: 185 TDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGI 244
T SI FA A + +K + +TK+TI K+YD RFK IF+E++ +K KF AAGI
Sbjct: 182 TVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGI 241
Query: 245 WYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIE 304
Y + LIDD+VA +K+EGG +WACKNYDGDV SD +A FGSL +M+SVLV P G E
Sbjct: 242 EYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYG-YFE 300
Query: 305 AEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACI 364
EAAHGTV RHY H KG TSTN +A I+AW+ L R +LD L F + LEA I
Sbjct: 301 YEAAHGTVQRHYYQHLKGERTSTNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITI 360
Query: 365 GTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 405
+ESG MT DLA I + + L++ EFID + L+
Sbjct: 361 ECIESGYMTGDLARICEPAAI---KVLDSIEFIDELGKRLQ 398
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 19/164 (11%)
Query: 244 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 302
+ EH ID+ L+ + V C N GD+ SD +A GS+GL+ S+ + G
Sbjct: 228 VELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFG 287
Query: 303 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAA 362
+ E A G+ G+ N +A I + + L H KL++ A +EAA
Sbjct: 288 M-YEPAGGSAP------DIAGQGIANPVAQILSAALLLRHSLKLEDAAL------AIEAA 334
Query: 363 CIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRA 406
+ SG +T +L S R T + D +AD ++A
Sbjct: 335 VSKALNSGYLTGELL-----SSDQRHKAKTTVQMGDFIADAVKA 373
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 140/363 (38%), Gaps = 51/363 (14%)
Query: 61 ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPII-CKNV 119
++ A ++ VA+K TP + ++S N TIR +L+ P+ K V
Sbjct: 83 DTLNAIKEFRVALKGPLTTP---------VGGGYRSLNVTIRQVLDLYANVRPVYYLKGV 133
Query: 120 PRLIPGWTK-PICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKTELEVYNFTGEGGV 178
P I K I R D Y + LKL+ K+E + + +G G
Sbjct: 134 PSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEALKLIRFLKNE-FGVTIREDSGIGIK 192
Query: 179 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAN---- 234
+S + T +R ++ + + L K I+K +G F+D EV +
Sbjct: 193 PISEFATKRLVRMAIRYAIEN---NRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEY 249
Query: 235 ----------WKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQ 283
+ K I + R+ D+M L Y V A N +GD SD A
Sbjct: 250 CITEDELWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAA 309
Query: 284 GFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHR 343
G LG+ + DG + E HG+ ++ G+ N A I + +
Sbjct: 310 LIGGLGIAPGSNIG-DGIGV-FEPVHGSAPKY------AGQNKVNPTAEILTGALMFEYI 361
Query: 344 AKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADD 403
D +E ++ A T+ SG +T D+ + G+K + T EF +AV ++
Sbjct: 362 G-------WKDASEMIKKAVEMTISSGIVTYDIHRHMGGTK------VGTREFAEAVVEN 408
Query: 404 LRA 406
L++
Sbjct: 409 LQS 411
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 209 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 258
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 259 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 314
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 315 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 374
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 375 DLALIIHGSKMTREHYLNTEEFIDAVADDL 404
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 209 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 258
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 259 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 314
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 315 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 374
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 375 DLALIIHGSKMTREHYLNTEEFIDAVADDL 404
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 209 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 258
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 259 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 314
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 315 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 374
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 375 DLALIIHGSKMTREHYLNTEEFIDAVADDL 404
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 209 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 258
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 225 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 284
Query: 259 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 314
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 285 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 342
Query: 315 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 374
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 343 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 389
Query: 375 DLALIIHGSKMTREHYLNTEEFIDAVADDL 404
D ++ G+K+ L EF DA+ +++
Sbjct: 390 DFERLMDGAKL-----LKCSEFGDAIIENM 414
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 209 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 258
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 259 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 314
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 315 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 374
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 375 DLALIIHGSKMTREHYLNTEEFIDAVADDL 404
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 209 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 258
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 259 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 314
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 315 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 374
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 375 DLALIIHGSKMTREHYLNTEEFIDAVADDL 404
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 209 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 258
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 259 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 314
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 315 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 374
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 375 DLALIIHGSKMTREHYLNTEEFIDAVADDL 404
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 209 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 258
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 259 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 314
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 315 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 374
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 375 DLALIIHGSKMTREHYLNTEEFIDAVADDL 404
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 209 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 258
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 259 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 314
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 315 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 374
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 375 DLALIIHGSKMTREHYLNTEEFIDAVADDL 404
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 34/210 (16%)
Query: 209 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 258
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 259 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 314
L+ V AC N +GD SD LA G +G+ + + EA HGT
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDEYALF--EATHGTAP- 343
Query: 315 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 374
G+ N + I + L H + ++ E G + + +TK
Sbjct: 344 -----DIAGQDKANPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTK 391
Query: 375 DLALIIHGSKMTREHYLNTEEFIDAVADDL 404
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFESLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 83/210 (39%), Gaps = 34/210 (16%)
Query: 209 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 258
L K I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 259 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 314
L+ V AC N +GD SD LA G +G+ + + EA HGT
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPA 344
Query: 315 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 374
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 375 DLALIIHGSKMTREHYLNTEEFIDAVADDL 404
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 244 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 302
+ EH ID+ L+ + V C N GD+ SD +A GS+GL+ S+ + G
Sbjct: 228 VELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFG 287
Query: 303 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAA 362
+ E A G+ G+ N +A I + + L H KL++ A +EAA
Sbjct: 288 M-YEPAGGSAP------DIAGQGIANPVAQILSAALLLRHSLKLEDAAL------AIEAA 334
Query: 363 CIGTVESGKMTKDL 376
+ G +T +L
Sbjct: 335 VSKALSDGYLTCEL 348
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 34/210 (16%)
Query: 209 LSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVAYA-- 258
L I+K +G FKD ++ + + G W + + +I D++A A
Sbjct: 227 LVHMGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 259 ----LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 314
L+ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 315 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTK 374
+ G+ N + I + L H + ++ E G + + +T
Sbjct: 345 Y------AGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME-------GAINAKTVTY 391
Query: 375 DLALIIHGSKMTREHYLNTEEFIDAVADDL 404
D ++ G+K+ L EF DA+ +++
Sbjct: 392 DFERLMDGAKL-----LKCSEFGDAIIENM 416
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 19/164 (11%)
Query: 244 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 302
+ EH ID+ L+ + V C N GD+ SD +A GS+GL++S + G
Sbjct: 228 VELEHIYIDNATMQLLRRPDEFDVMLCSNLFGDILSDEIAMLTGSMGLLSSASMNSTGFG 287
Query: 303 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAA 362
+ E A G+ G+ N IA I + + L H K + A +E A
Sbjct: 288 L-FEPAGGSAP------DIAGKGIANPIAQILSAALMLRHSLKQEEAA------SAIERA 334
Query: 363 CIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRA 406
+ SG +T +L S R T + D +AD ++A
Sbjct: 335 VTKALNSGYLTGELL-----SSDQRHKAKTTVQMGDFIADAVKA 373
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 33/236 (13%)
Query: 174 GEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 233
GE ++ T E I + A +K + K +L+ +++EV E
Sbjct: 173 GEEAAVDTLLYTREEIERIIRKAFELALTRKKKVTSVDKANVLES-----SRLWREVAEE 227
Query: 234 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 292
K E + EH L+D+ +++ + V +N GD+ SD + GSLG++
Sbjct: 228 VAK---EYPDVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLP 284
Query: 293 SVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARL 352
S + DG + E HG+ G+ N +A+I + + L + L+ A+
Sbjct: 285 SASLSTDGLGL-YEPVHGSAP------DIAGKGIANPLATILSAAMMLRYSFGLEEEAK- 336
Query: 353 LDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFID----AVADDL 404
+E A + G T D+A G K Y++T E D AV D+L
Sbjct: 337 -----AIEKAVEKVLAEGYRTADIAK--PGGK-----YVSTTEMTDEVKAAVVDEL 380
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 32/200 (16%)
Query: 207 LYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY- 265
++ +TK+ I+K +G K F++V + E I H ++D+ +K +
Sbjct: 186 VHCATKSNIMKLAEGTLKRAFEQVAQ-------EYPDIEAVHIIVDNAAHQLVKRPEQFE 238
Query: 266 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGET 325
V N +GD+ SD + G LG S + + EA HG+ ++ G+
Sbjct: 239 VIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIF--EAVHGSAPKY------AGKN 290
Query: 326 STNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGK-MTKDLALIIHGSK 384
N A + + L + + + +E A + T+E G+ +T D+ G+K
Sbjct: 291 VINPTAVLLSAVMMLRYLEEFAT-------ADLIENALLYTLEEGRVLTGDVVGYDRGAK 343
Query: 385 MTREHYLNTEEFIDAVADDL 404
T E+ +A+ +L
Sbjct: 344 TT--------EYTEAIIQNL 355
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 248 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAE 306
H ID+ +K + V C N GD+ SD A GS+G++ S + G + E
Sbjct: 223 HMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLY-E 281
Query: 307 AAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGT 366
A G+ G+ N IA I + + L R LD N D +E A
Sbjct: 282 PAGGSAP------DIAGKNIANPIAQILSLA--LLLRYSLDAN----DAATAIEQAINRA 329
Query: 367 VESGKMTKDLA 377
+E G T DLA
Sbjct: 330 LEEGVRTGDLA 340
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 235 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 288
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 289 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 347
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 348 NNAR 351
AR
Sbjct: 306 ELAR 309
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 235 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 288
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 289 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 347
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 348 NNAR 351
AR
Sbjct: 306 ELAR 309
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 235 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 288
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 289 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 347
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 348 NNAR 351
AR
Sbjct: 306 ELAR 309
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 235 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 288
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 289 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 347
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 348 NNAR 351
AR
Sbjct: 306 ELAR 309
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 235 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 288
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 198 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 257
Query: 289 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 347
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 258 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 308
Query: 348 NNAR 351
AR
Sbjct: 309 ELAR 312
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 235 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 288
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 289 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 347
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 348 NNAR 351
AR
Sbjct: 306 ELAR 309
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 235 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 288
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 289 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 347
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 348 NNAR 351
AR
Sbjct: 306 ELAR 309
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 235 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 288
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 289 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 347
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 348 NNAR 351
AR
Sbjct: 306 ELAR 309
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 235 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 288
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 289 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 347
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 348 NNAR 351
AR
Sbjct: 306 ELAR 309
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 235 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 288
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 289 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 347
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 348 NNAR 351
AR
Sbjct: 306 ELAR 309
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 235 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 288
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 289 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 347
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 348 NNAR 351
AR
Sbjct: 306 ELAR 309
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 84/197 (42%), Gaps = 24/197 (12%)
Query: 182 MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA 241
+Y+ DE IR A + A ++ L K +L+ ++++ EV +
Sbjct: 161 VYDEDE-IRRIAHVAFRAAQGRRKQLCSVDKANVLETTR-LWREVVTEVAR-------DY 211
Query: 242 AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 300
+ H +D+ +++ + V N GD+ SD +Q GS+G++ S + +G
Sbjct: 212 PDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLG-EG 270
Query: 301 KTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLE 360
+ + E HG+ G+ N +A+I + + L H + + +++E
Sbjct: 271 RAMY-EPIHGSAP------DIAGQDKANPLATILSVAMMLRHSLNAEP------WAQRVE 317
Query: 361 AACIGTVESGKMTKDLA 377
AA ++ G T D+A
Sbjct: 318 AAVQRVLDQGLRTADIA 334
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 235 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 288
W+ E G Y EH+ +D M + ++S + V N GD+ SD + GSL
Sbjct: 193 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 252
Query: 289 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 347
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 253 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 303
Query: 348 NNAR 351
AR
Sbjct: 304 ELAR 307
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 88/433 (20%), Positives = 160/433 (36%), Gaps = 81/433 (18%)
Query: 1 MAFQKIKVANPIVEMDGDEMT--RVFWKSIKDKLIFPFLELDIKYFDLG---LPNRDATD 55
M +Q IKV GD++T + F ++ D+ I P++E D FD+ + DA
Sbjct: 9 MPYQHIKVPE-----GGDKITVNKDFSLNVSDQPIIPYIEGDGTGFDITPVMIKVVDAAV 63
Query: 56 DK----------------------------VTVESAEATLKYNVAIKCATITPDEARVKE 87
+K + E+ + +Y V+IK TP ++
Sbjct: 64 EKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLTTPVGGGIRS 123
Query: 88 FVLKQMWKSPNGTIRNILNGTVFREPI-ICKNVPRLI--PGWTKPICIGRHAFGDQYRAT 144
N +R L+ V PI K VP + P T + I R D Y
Sbjct: 124 L---------NVALRQELDLYVCLRPIQYFKGVPSPVREPEKTN-MVIFRENSEDIYAGI 173
Query: 145 DTVIQGPGKLKLVFEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK 204
+ + + K V + E+ ++ F G+ + + + + R +A +
Sbjct: 174 EWAAESE-QAKKVIKFLQEEMGVKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDR 232
Query: 205 WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR--------LIDDMVA 256
+ L K I+K +G F+D + + + ++ G W + + ++ D +A
Sbjct: 233 KSVTLVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIA 292
Query: 257 YA------LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHG 310
A L+ V A N +GD SD LA G +G+ + EA HG
Sbjct: 293 DAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMF--EATHG 350
Query: 311 TVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG 370
T ++ G+ N + I + L H + ++ EK +++
Sbjct: 351 TAPKY------AGKDYVNPGSEILSAEMMLRHLGWTEAADVIISAMEK-------SIKQK 397
Query: 371 KMTKDLALIIHGS 383
++T D A ++ G+
Sbjct: 398 RVTYDFARLMEGA 410
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 248 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAE 306
H ID+ +K + V C N GD+ SD A GS+G++ S + G + E
Sbjct: 223 HMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGL-YE 281
Query: 307 AAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGT 366
A G+ G+ N IA I + + L R LD + D +E A
Sbjct: 282 PAGGSAP------DIAGKNIANPIAQILSLA--LLLRYSLDAD----DAACAIERAINRA 329
Query: 367 VESGKMTKDLA 377
+E G T DLA
Sbjct: 330 LEEGIRTGDLA 340
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 176 GGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANW 235
G +A + + + IR S++ KK + + K+ ++ DG F++ + +
Sbjct: 168 GKMAFEIAKSRQKIRESGTYSIH----KKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDP 223
Query: 236 KSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSV 294
A I + +++D MV + + V N GD+ SD A GSLGL+ S
Sbjct: 224 SY----ASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSA 279
Query: 295 LVCPDGKTIEAEAAHGT 311
V + + +E HG+
Sbjct: 280 NVGDN--FVMSEPVHGS 294
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 18/173 (10%)
Query: 192 FAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLI 251
A+ +N A +++ + K +++ DG +F E + K K E Y +
Sbjct: 149 IAKVGLNFALRRRKKVTCVHKANVMRITDG----LFAEACRSVLKGKVE-----YSEMYV 199
Query: 252 DDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHG 310
D A +++ + V +N GD+ SD +Q GSLG+ S + D K + E HG
Sbjct: 200 DAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIG-DKKAL-FEPVHG 257
Query: 311 TVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAAC 363
G+ N A + + S +L N+ R + + LE A
Sbjct: 258 A------AFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAI 304
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 77/201 (38%), Gaps = 34/201 (16%)
Query: 207 LYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA-YALKSEGGY 265
L+++ K +L G F D +EV + F + + ++D+ ++ E
Sbjct: 166 LHIAHKANVLPLTQGLFLDTVKEVAK-----DFPLVNV--QDIIVDNCATQLVMRPERYD 218
Query: 266 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGET 325
V N GD+ SD A G LGL P G + A V H G+
Sbjct: 219 VIVTTNLLGDILSDLAAGLMGGLGL------APSGNIGDTTAVFEPV--HGSAPDIAGKG 270
Query: 326 STNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKM 385
N A+I + + L + + + R +E A +E G MT DL G
Sbjct: 271 IANPTAAILSAAMMLDYLGEKEAAKR-------VEKAVDLVLERGPMTPDL-----GGDA 318
Query: 386 TREHYLNTEEFIDAVADDLRA 406
T TE F +AV + L++
Sbjct: 319 T------TEAFTEAVVEALKS 333
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 15/112 (13%)
Query: 266 VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGET 325
V N GD+ SD A GSLGL+ S G E A G+ G+
Sbjct: 246 VILTTNMFGDILSDESAALPGSLGLLPSASF---GDKNLYEPAGGSAP------DIAGKN 296
Query: 326 STNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 377
N IA I + + L H + AR K+E A +E G T+D+A
Sbjct: 297 IANPIAQILSLAMMLEHSFGMVEEAR------KIERAVELVIEEGYRTRDIA 342
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 235 WKSKFEAAGIWY-----EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 288
W+ E G Y EH+ +D + ++S + V N GD+ SD + GSL
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAAAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSL 254
Query: 289 GLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 347
GL+ S + G+ T E HG+ G+ N A+I + + L H L
Sbjct: 255 GLLPSASL---GRGTPVFEPVHGSAP------DIAGKGIANPTAAILSAAMMLEHAFGLV 305
Query: 348 NNAR 351
AR
Sbjct: 306 ELAR 309
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 22/204 (10%)
Query: 174 GEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 233
GE V ++ T E I E + A ++ L K +L+ +++E+ E
Sbjct: 152 GENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLES-----SRMWREIAEE 206
Query: 234 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 292
K + + H L+D + + G + V +N GD+ SD + GSLG++
Sbjct: 207 TAKKYPD---VELSHMLVDSTAMQLIANPGQFDVIVTENMFGDILSDLASVITGSLGMLP 263
Query: 293 SVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARL 352
S + D + E HG+ G+ N + ++ + + L + L+ A
Sbjct: 264 SASLRSD-RFGMYEPVHGSAP------DIAGQGKANPLGTVLSAALMLRYSFGLEKEA-- 314
Query: 353 LDFTEKLEAACIGTVESGKMTKDL 376
+E A ++ G T DL
Sbjct: 315 ----AAIEKAVDDVLQDGYCTGDL 334
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 22/207 (10%)
Query: 172 FTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVY 231
F GE +M ++ +R A + A ++ L K+ +L+ ++D+ +V
Sbjct: 158 FAGEREGFDTMRYSEPEVRRIAHVAFQAAQKRAKKLLSVDKSNVLETSQ-FWRDVMIDVS 216
Query: 232 EANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGL 290
+ E A + H +D+ K+ + V N GD+ SD + GS+G+
Sbjct: 217 K-------EYADVELSHMYVDNAAMQLAKAPKQFDVIVTGNMFGDILSDEASMLTGSIGM 269
Query: 291 MTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNA 350
+ S + + K + E +HG+ G+ N +A+I S + R L+
Sbjct: 270 LPSASLDKNNKGLY-EPSHGSAP------DIAGKGIANPLATIL--SAAMLLRYSLNRAE 320
Query: 351 RLLDFTEKLEAACIGTVESGKMTKDLA 377
+ +++E A +E G T D+A
Sbjct: 321 Q----ADRIERAVKTVLEQGYRTGDIA 343
>pdb|3TKN|A Chain A, Structure Of The Nup82-Nup159-Nup98 Heterotrimer
pdb|3TKN|D Chain D, Structure Of The Nup82-Nup159-Nup98 Heterotrimer
pdb|3TKN|G Chain G, Structure Of The Nup82-Nup159-Nup98 Heterotrimer
Length = 452
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 18/129 (13%)
Query: 128 KPICIGR--HAFGDQYRATDTVIQGPGKLKLVFEGKDEKTELEVYNF-TGEGGVALSMYN 184
KPI + + ++FG R D + + + K L +Y T EGG + Y
Sbjct: 162 KPIVLNKPNNSFGLDARVND-----------ITDLEFSKDGLTLYCLNTTEGGDIFAFYP 210
Query: 185 TDESIRAFAEASMNTAYQKKWPLYLS---TKNTILKKYDGRFKDIFQEVYEANWKSKFEA 241
S+ E +N K +Y S T + I+K+ + +++E NW S+F
Sbjct: 211 FLPSVLLLNEKDLNLILNKSLVMYESLDSTTDVIVKRNVIKQLQFVSKLHE-NWNSRFGK 269
Query: 242 AGIWYEHRL 250
I E+RL
Sbjct: 270 VDIQKEYRL 278
>pdb|3IF0|X Chain X, Crystal Structure Of The Nanoarchaeum Equitans Trna
Splicing Endonuclease Structural Subunit
pdb|3IEY|B Chain B, Crystal Structure Of The Functional Nanoarchaeum Equitans
Trna Splicing Endonuclease
Length = 153
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 201 YQKKWPLYLSTKNTILKKYDGRFKDIFQEVYE 232
Y+ W +Y + K+ IL+ Y RF F E+YE
Sbjct: 57 YKNFWEIYYTVKDLILRGYRVRFDGFFIELYE 88
>pdb|2FIC|A Chain A, The Crystal Structure Of The Bar Domain From Human
Bin1AMPHIPHYSIN II And Its Implications For Molecular
Recognition
pdb|2FIC|B Chain B, The Crystal Structure Of The Bar Domain From Human
Bin1AMPHIPHYSIN II And Its Implications For Molecular
Recognition
Length = 251
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 32/120 (26%)
Query: 142 RATDTVIQGPGKLKLVFEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAY 201
RA + V+Q GK E KDE+ E V NF + + T
Sbjct: 34 RAQEKVLQKLGK---ADETKDEQFEQCVQNFN-------------------KQLTEGTRL 71
Query: 202 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGI-------W--YEHRLID 252
QK YL++ + + + + QEVYE +W + EA I W Y +L+D
Sbjct: 72 QKDLRTYLASVKA-MHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVD 130
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 22/204 (10%)
Query: 174 GEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 233
GE V ++ T E I E + A ++ L K +L+ +++E+ E
Sbjct: 152 GENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLES-----SRMWREIAEE 206
Query: 234 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 292
K + + H L+D + + G + V +N GD+ SD + GSLG++
Sbjct: 207 TAKKYPD---VELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLP 263
Query: 293 SVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARL 352
S + D + E HG+ G+ N + ++ + + L + L+ A
Sbjct: 264 SASLRSD-RFGMYEPVHGSAP------DIAGQGKANPLGTVLSAALMLRYSFGLEKEA-- 314
Query: 353 LDFTEKLEAACIGTVESGKMTKDL 376
+E A ++ G T DL
Sbjct: 315 ----AAIEKAVDDVLQDGYCTGDL 334
>pdb|4AVG|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 2
pdb|4AVG|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 2
pdb|4AVG|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 2
pdb|4AVG|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 2
pdb|4AVL|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Dtmp
pdb|4AVL|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Dtmp
pdb|4AVL|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Dtmp
pdb|4AVL|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Dtmp
pdb|4AVQ|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease
pdb|4AVQ|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease
pdb|4AVQ|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease
pdb|4AVQ|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease
pdb|4AWF|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With 2 4-Dioxo-4-Phenylbutanoic
Acid Dpba
pdb|4AWF|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With 2 4-Dioxo-4-Phenylbutanoic
Acid Dpba
pdb|4AWF|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With 2 4-Dioxo-4-Phenylbutanoic
Acid Dpba
pdb|4AWF|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With 2 4-Dioxo-4-Phenylbutanoic
Acid Dpba
pdb|4AWG|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 3
pdb|4AWG|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 3
pdb|4AWG|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 3
pdb|4AWG|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 3
pdb|4AWH|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Rump
pdb|4AWH|B Chain B, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Rump
pdb|4AWH|C Chain C, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Rump
pdb|4AWH|D Chain D, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Rump
Length = 204
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 161 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 203
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 145 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 187
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 22/204 (10%)
Query: 174 GEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA 233
GE V ++ T E I E + A ++ L K +L+ +++E+ E
Sbjct: 152 GENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLES-----SRMWREIAEE 206
Query: 234 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMT 292
K + + H L+D + + G + V +N GD+ SD + GSLG++
Sbjct: 207 TAKKYPD---VELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLP 263
Query: 293 SVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARL 352
S + D + E HG+ G+ N + ++ + + L + L+ A
Sbjct: 264 SASLRSD-RFGMYEPVHGSAP------DIAGQGKANPLGTVLSAALMLRYSFGLEKEA-- 314
Query: 353 LDFTEKLEAACIGTVESGKMTKDL 376
+E A ++ G T DL
Sbjct: 315 ----AAIEKAVDDVLQDGYCTGDL 334
>pdb|4AWM|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With (-)-Epigallocatechin
Gallate From Green Tea
Length = 192
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 161 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 203
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 133 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 175
>pdb|3PBP|A Chain A, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
pdb|3PBP|D Chain D, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
pdb|3PBP|G Chain G, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
pdb|3PBP|J Chain J, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116
Nucleoporin Complex
Length = 452
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 128 KPICIGR--HAFGDQYRATDTVIQGPGKLKLVFEGKDEKTELEVYNF-TGEGGVALSMYN 184
KPI + + ++FG R D + + + K L +Y T EGG + Y
Sbjct: 162 KPIVLNKPNNSFGLDARVND-----------ITDLEFSKDGLTLYCLNTTEGGDIFAFYP 210
Query: 185 TDESIRAFAEASMNTAYQKKWPLYLS---TKNTILKKYDGRFKDIFQEVYEANWKSKFEA 241
S+ E +N K Y S T + I+K+ + +++E NW S+F
Sbjct: 211 FLPSVLLLNEKDLNLILNKSLVXYESLDSTTDVIVKRNVIKQLQFVSKLHE-NWNSRFGK 269
Query: 242 AGIWYEHRL 250
I E+RL
Sbjct: 270 VDIQKEYRL 278
>pdb|3S4W|A Chain A, Structure Of The Fanci-Fancd2 Complex
pdb|3S4Z|A Chain A, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|B Chain B, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|C Chain C, Structure Of A Y Dna-Fanci Complex
pdb|3S51|A Chain A, Structure Of Fanci
pdb|3S51|B Chain B, Structure Of Fanci
pdb|3S51|C Chain C, Structure Of Fanci
pdb|3S51|D Chain D, Structure Of Fanci
Length = 1308
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 358 KLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVAD 402
K+ + CI VESG + +D+A I G M H+ +D +D
Sbjct: 67 KIYSCCIQLVESGDLQQDVASEIIGLLMLEVHHFPGPLLVDLASD 111
>pdb|4AWK|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 1
Length = 183
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 161 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 203
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 124 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 166
>pdb|3HW3|A Chain A, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|B Chain B, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|C Chain C, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|D Chain D, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW5|A Chain A, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|B Chain B, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|C Chain C, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|D Chain D, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW6|A Chain A, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|B Chain B, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|C Chain C, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|D Chain D, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW4|A Chain A, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|B Chain B, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|C Chain C, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|D Chain D, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
Length = 261
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 161 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 203
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 144 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 186
>pdb|3EBJ|A Chain A, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|B Chain B, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|C Chain C, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|D Chain D, Crystal Structure Of An Avian Influenza Virus Protein
Length = 259
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 161 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK 203
K EKT + +++FTGE + Y DE RA + + T Q+
Sbjct: 142 KSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQE 184
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|B Chain B, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|C Chain C, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|D Chain D, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|E Chain E, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|F Chain F, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|G Chain G, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|H Chain H, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 93/243 (38%), Gaps = 63/243 (25%)
Query: 185 TDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGI 244
T + I A + +A +K ++L K +L +++EV AN ++ I
Sbjct: 165 TKKEIERIARIAFESARIRKKKVHLIDKANVLAS-----SILWREVV-ANVAKDYQ--DI 216
Query: 245 WYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLA----------------QGFGS 287
E+ +D+ +K+ + V C N GD+ SD LA +GFG
Sbjct: 217 NLEYMYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFG- 275
Query: 288 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD 347
L P G + + AH + N IA I + + L + K +
Sbjct: 276 -------LYEPAGGS-APDIAHLNI--------------ANPIAQILSAALMLKYSFKEE 313
Query: 348 NNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRAR 407
A + +E A + GKMTKDL + YLNT+E D + + L+
Sbjct: 314 QAA------QDIENAISLALAQGKMTKDL---------NAKSYLNTDEMGDCILEILKEN 358
Query: 408 LSG 410
+G
Sbjct: 359 DNG 361
>pdb|3OR2|B Chain B, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
(Dsrii)
pdb|3OR2|E Chain E, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
(Dsrii)
Length = 385
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 204 KWPLYLSTKNTILKKY--DGR-FKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALK 260
+WP I++ Y D R ++ I ++ W++ +E G+ + H IDD +
Sbjct: 311 RWPTMAKIVKKIVEVYAEDARKYERIGDWIHRIGWETFYEKTGLEFSHHCIDD-----FR 365
Query: 261 SEGGYVW 267
Y W
Sbjct: 366 DPAYYTW 372
>pdb|3OR1|B Chain B, Crystal Structure Of Dissimilatory Sulfite Reductase I
(Dsri)
pdb|3OR1|E Chain E, Crystal Structure Of Dissimilatory Sulfite Reductase I
(Dsri)
Length = 386
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 204 KWPLYLSTKNTILKKY--DGR-FKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALK 260
+WP I++ Y D R ++ I ++ W++ +E G+ + H IDD +
Sbjct: 312 RWPTMAKIVKKIVEVYAEDARKYERIGDWIHRIGWETFYEKTGLEFSHHCIDD-----FR 366
Query: 261 SEGGYVW 267
Y W
Sbjct: 367 DPAYYTW 373
>pdb|3IS1|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In C2 Form At 2.45 Angstrom
Resolution
Length = 446
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 263 GGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 317
GGYVW KN DG VQ+D A G +T L+ P G I +T HY
Sbjct: 326 GGYVWFDKNNDG-VQNDSNAAAAG----ITVNLLDPTG--IRLATTTTDITGHYN 373
>pdb|3IRP|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus At 1.50 Angstrom Resolution
pdb|3IRZ|A Chain A, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In P212121 Form
pdb|3IS0|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In The Presence Of
Cholesterol
Length = 429
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 263 GGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 317
GGYVW KN DG VQ+D A G +T L+ P G I +T HY
Sbjct: 309 GGYVWFDKNNDG-VQNDSNAAAAG----ITVNLLDPTG--IRLATTTTDITGHYN 356
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,952,180
Number of Sequences: 62578
Number of extensions: 562875
Number of successful extensions: 1295
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1234
Number of HSP's gapped (non-prelim): 91
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)