Query 015139
Match_columns 412
No_of_seqs 140 out of 1144
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:29:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0473 LeuB Isocitrate/isopro 100.0 3E-110 6E-115 820.4 31.1 339 8-406 2-347 (348)
2 TIGR00127 nadp_idh_euk isocitr 100.0 2E-108 4E-113 830.9 38.9 402 4-410 1-409 (409)
3 PLN03065 isocitrate dehydrogen 100.0 3E-108 7E-113 838.9 40.3 401 2-411 70-480 (483)
4 PRK08299 isocitrate dehydrogen 100.0 4E-108 8E-113 828.3 39.2 394 3-408 1-402 (402)
5 PTZ00435 isocitrate dehydrogen 100.0 1E-107 3E-112 826.0 39.7 407 2-410 2-412 (413)
6 PLN00103 isocitrate dehydrogen 100.0 3E-106 6E-111 816.4 37.0 398 1-408 1-410 (410)
7 PRK08997 isocitrate dehydrogen 100.0 9E-105 2E-109 791.2 35.0 330 8-404 1-334 (334)
8 PLN02329 3-isopropylmalate deh 100.0 1E-104 2E-109 804.8 34.3 357 8-411 45-408 (409)
9 PRK08194 tartrate dehydrogenas 100.0 2E-104 4E-109 794.6 34.5 339 10-405 4-350 (352)
10 PLN00118 isocitrate dehydrogen 100.0 6E-104 1E-108 792.8 34.1 328 9-404 41-372 (372)
11 TIGR02089 TTC tartrate dehydro 100.0 6E-104 1E-108 791.6 33.6 340 10-404 4-352 (352)
12 PRK14025 multifunctional 3-iso 100.0 1E-103 2E-108 782.3 34.6 322 10-404 2-330 (330)
13 PRK09222 isocitrate dehydrogen 100.0 6E-102 1E-106 797.0 34.8 338 8-407 3-344 (482)
14 PRK03437 3-isopropylmalate deh 100.0 1E-101 3E-106 772.0 33.3 333 10-404 5-344 (344)
15 PRK00772 3-isopropylmalate deh 100.0 3E-101 6E-106 772.9 35.5 346 8-405 1-356 (358)
16 PLN00123 isocitrate dehydrogen 100.0 3E-101 7E-106 769.5 35.1 321 10-404 31-359 (360)
17 PRK06451 isocitrate dehydrogen 100.0 2E-101 5E-106 783.5 35.0 350 12-405 26-409 (412)
18 TIGR00169 leuB 3-isopropylmala 100.0 3E-101 7E-106 771.1 34.6 342 11-404 1-349 (349)
19 TIGR02924 ICDH_alpha isocitrat 100.0 2E-101 4E-106 790.8 33.4 334 11-406 2-339 (473)
20 TIGR00175 mito_nad_idh isocitr 100.0 2E-100 5E-105 761.6 33.7 325 10-404 4-333 (333)
21 PRK07006 isocitrate dehydrogen 100.0 3E-100 6E-105 776.5 33.7 349 12-404 22-409 (409)
22 TIGR02088 LEU3_arch isopropylm 100.0 6.4E-99 1E-103 747.2 34.4 319 12-401 1-322 (322)
23 KOG0785 Isocitrate dehydrogena 100.0 2E-100 4E-105 733.6 22.5 326 10-404 36-365 (365)
24 TIGR00183 prok_nadp_idh isocit 100.0 8.7E-99 2E-103 768.6 33.4 350 12-404 29-416 (416)
25 PRK07362 isocitrate dehydrogen 100.0 2.9E-98 6E-103 759.5 32.2 351 12-404 31-474 (474)
26 PF00180 Iso_dh: Isocitrate/is 100.0 5.6E-96 1E-100 737.0 20.8 338 11-400 1-348 (348)
27 PLN00096 isocitrate dehydrogen 100.0 2.3E-91 5E-96 698.9 33.0 377 13-404 2-393 (393)
28 COG0538 Icd Isocitrate dehydro 100.0 4.2E-86 9.1E-91 651.2 30.2 365 10-405 19-407 (407)
29 KOG0784 Isocitrate dehydrogena 100.0 2.1E-85 4.6E-90 636.9 25.2 326 9-405 42-373 (375)
30 KOG0786 3-isopropylmalate dehy 100.0 6.2E-84 1.3E-88 605.7 21.6 345 9-408 4-362 (363)
31 KOG1526 NADP-dependent isocitr 100.0 3.3E-74 7.1E-79 551.1 28.0 409 1-411 10-420 (422)
32 PF03971 IDH: Monomeric isocit 96.2 0.087 1.9E-06 56.6 13.5 184 176-370 449-640 (735)
33 TIGR00178 monomer_idh isocitra 95.9 0.12 2.7E-06 55.5 12.8 178 186-377 463-652 (741)
34 PF04166 PdxA: Pyridoxal phosp 93.8 0.043 9.4E-07 54.9 2.7 134 182-338 150-296 (298)
35 PRK03371 pdxA 4-hydroxythreoni 93.0 0.069 1.5E-06 54.1 2.8 142 182-341 176-324 (326)
36 PRK00232 pdxA 4-hydroxythreoni 93.0 0.068 1.5E-06 54.3 2.7 144 182-342 177-326 (332)
37 PRK03743 pdxA 4-hydroxythreoni 92.8 0.075 1.6E-06 54.0 2.7 143 182-342 177-326 (332)
38 PRK01909 pdxA 4-hydroxythreoni 92.6 0.083 1.8E-06 53.6 2.7 143 182-342 172-322 (329)
39 PRK03946 pdxA 4-hydroxythreoni 92.5 0.086 1.9E-06 53.0 2.7 136 182-342 157-303 (307)
40 PRK05312 pdxA 4-hydroxythreoni 92.5 0.086 1.9E-06 53.6 2.7 143 182-342 181-331 (336)
41 PRK02746 pdxA 4-hydroxythreoni 92.4 0.091 2E-06 53.6 2.7 140 182-342 179-339 (345)
42 TIGR00557 pdxA 4-hydroxythreon 92.2 0.1 2.2E-06 52.8 2.7 142 182-341 169-318 (320)
43 COG1995 PdxA Pyridoxal phospha 92.2 0.096 2.1E-06 52.8 2.5 59 278-342 267-325 (332)
44 COG2838 Icd Monomeric isocitra 91.1 0.53 1.1E-05 49.9 6.7 177 184-370 463-646 (744)
45 KOG0785 Isocitrate dehydrogena 76.6 1.7 3.7E-05 43.7 2.2 40 98-150 127-166 (365)
46 PRK06451 isocitrate dehydrogen 72.7 2.4 5.2E-05 44.5 2.3 25 127-151 141-165 (412)
47 TIGR00183 prok_nadp_idh isocit 71.6 2.7 5.9E-05 44.1 2.4 21 127-147 146-166 (416)
48 COG0473 LeuB Isocitrate/isopro 69.0 3.3 7.1E-05 42.3 2.3 21 127-147 119-139 (348)
49 TIGR00175 mito_nad_idh isocitr 68.5 3.9 8.5E-05 41.7 2.7 21 128-148 111-131 (333)
50 PRK14025 multifunctional 3-iso 64.8 4.2 9.2E-05 41.4 2.1 21 127-147 105-125 (330)
51 PLN00123 isocitrate dehydrogen 64.7 4.9 0.00011 41.4 2.6 21 127-147 133-153 (360)
52 PLN00118 isocitrate dehydrogen 63.3 5.4 0.00012 41.3 2.6 22 127-148 149-170 (372)
53 TIGR02088 LEU3_arch isopropylm 62.4 4.8 0.00011 40.9 2.0 20 127-146 107-126 (322)
54 PRK03437 3-isopropylmalate deh 62.4 5.4 0.00012 40.9 2.4 19 127-145 121-139 (344)
55 PRK08997 isocitrate dehydrogen 62.3 5 0.00011 40.9 2.1 20 127-146 110-129 (334)
56 PRK07006 isocitrate dehydrogen 61.4 5.8 0.00013 41.6 2.5 20 127-146 139-158 (409)
57 PRK08299 isocitrate dehydrogen 59.8 5.7 0.00012 41.5 2.0 18 144-161 126-143 (402)
58 PRK08194 tartrate dehydrogenas 57.3 7.4 0.00016 40.0 2.3 20 127-146 123-142 (352)
59 KOG1671 Ubiquinol cytochrome c 57.0 5.9 0.00013 37.4 1.5 32 287-325 155-186 (210)
60 PRK09222 isocitrate dehydrogen 56.7 8 0.00017 41.4 2.5 21 127-147 114-134 (482)
61 PRK07362 isocitrate dehydrogen 56.0 7.4 0.00016 41.4 2.1 20 127-146 148-167 (474)
62 TIGR00169 leuB 3-isopropylmala 55.0 8.2 0.00018 39.7 2.2 20 127-146 124-143 (349)
63 PRK03371 pdxA 4-hydroxythreoni 53.4 10 0.00022 38.6 2.6 22 8-29 1-24 (326)
64 TIGR02924 ICDH_alpha isocitrat 53.3 9.4 0.0002 40.7 2.4 21 127-147 110-130 (473)
65 COG1618 Predicted nucleotide k 50.5 1.9E+02 0.004 27.0 10.0 95 184-285 81-176 (179)
66 PLN02329 3-isopropylmalate deh 49.7 8.2 0.00018 40.5 1.3 19 127-145 171-189 (409)
67 PRK00772 3-isopropylmalate deh 49.2 8.5 0.00018 39.7 1.3 20 127-146 127-146 (358)
68 PF00180 Iso_dh: Isocitrate/is 47.4 9.4 0.0002 39.1 1.3 24 127-150 120-143 (348)
69 TIGR02089 TTC tartrate dehydro 46.0 11 0.00023 38.9 1.4 19 127-145 125-143 (352)
70 PRK00232 pdxA 4-hydroxythreoni 43.6 19 0.00041 36.8 2.8 22 8-29 3-26 (332)
71 COG0538 Icd Isocitrate dehydro 43.5 14 0.00031 38.2 1.9 20 142-161 135-154 (407)
72 PRK05312 pdxA 4-hydroxythreoni 42.8 19 0.00042 36.8 2.7 22 8-29 2-25 (336)
73 PRK02746 pdxA 4-hydroxythreoni 38.3 29 0.00063 35.7 3.1 23 7-29 7-31 (345)
74 PRK03743 pdxA 4-hydroxythreoni 38.1 25 0.00054 35.9 2.6 20 10-29 4-25 (332)
75 PRK01909 pdxA 4-hydroxythreoni 37.7 30 0.00065 35.3 3.1 20 10-29 6-27 (329)
76 COG4992 ArgD Ornithine/acetylo 36.7 61 0.0013 34.0 5.2 54 275-344 247-301 (404)
77 PF14542 Acetyltransf_CG: GCN5 35.9 77 0.0017 25.1 4.7 39 187-236 38-76 (78)
78 KOG0784 Isocitrate dehydrogena 33.2 27 0.00059 35.8 1.9 23 128-150 150-172 (375)
79 PRK03946 pdxA 4-hydroxythreoni 29.5 38 0.00082 34.3 2.3 19 10-28 2-22 (307)
80 COG1995 PdxA Pyridoxal phospha 28.0 42 0.00091 34.2 2.3 17 9-25 3-21 (332)
81 PF00582 Usp: Universal stress 27.8 61 0.0013 26.2 3.0 26 186-211 12-37 (140)
82 PRK07232 bifunctional malic en 26.7 2.2E+02 0.0047 32.5 7.8 97 185-288 602-714 (752)
83 COG1222 RPT1 ATP-dependent 26S 25.2 1.2E+02 0.0026 31.7 5.0 67 190-277 230-303 (406)
84 TIGR00557 pdxA 4-hydroxythreon 25.1 57 0.0012 33.2 2.7 19 11-29 1-21 (320)
85 COG0723 QcrA Rieske Fe-S prote 23.8 57 0.0012 29.8 2.2 34 288-329 111-145 (177)
86 cd01988 Na_H_Antiporter_C The 23.6 99 0.0021 25.4 3.5 28 187-214 10-37 (132)
87 KOG1014 17 beta-hydroxysteroid 22.4 1.3E+02 0.0029 30.4 4.7 43 195-252 65-107 (312)
88 PRK12861 malic enzyme; Reviewe 22.3 3.4E+02 0.0073 31.1 8.2 96 185-287 611-722 (764)
89 PRK15005 universal stress prot 21.2 1.3E+02 0.0028 25.4 3.8 23 189-211 17-39 (144)
90 TIGR00651 pta phosphate acetyl 20.6 3.3E+02 0.0071 27.4 7.1 96 185-287 157-269 (303)
91 KOG0189 Phosphoadenosine phosp 20.3 2.3E+02 0.0049 27.4 5.4 58 197-265 62-122 (261)
92 PRK10310 PTS system galactitol 20.2 1.8E+02 0.0039 23.8 4.3 40 8-47 1-42 (94)
No 1
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-110 Score=820.38 Aligned_cols=339 Identities=22% Similarity=0.255 Sum_probs=306.8
Q ss_pred ecccEEEECCCCchHHHHHHHHHHHhcCC---CceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchh
Q 015139 8 VANPIVEMDGDEMTRVFWKSIKDKLIFPF---LELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (412)
Q Consensus 8 m~~~I~vi~GDGiGpEv~~~~~~vl~~~~---~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~ 84 (412)
|+++|++|||||||||||+++++||.+.. ++|+|+++++|++++++||.++|++++++++++|++|+||+++|.+.+
T Consensus 2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~ 81 (348)
T COG0473 2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP 81 (348)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence 56999999999999999999999987654 899999999999999999999999999999999999999999996543
Q ss_pred HHHHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCcc
Q 015139 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEK 164 (412)
Q Consensus 85 ~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~ 164 (412)
. .++++|++++|||+||||||+||++ ++|++ ++++. .++|+|+|||||||+|||.++..
T Consensus 82 ~-----~~~~~~~ll~lRk~l~lyANlRP~k--~~~~~----k~~~~----------~~~D~viVREnTeG~Y~G~~~~~ 140 (348)
T COG0473 82 L-----PRPERGLLLALRKELDLYANLRPAK--SLPGL----KSPLV----------KGVDIVIVRENTEGLYFGEEGRI 140 (348)
T ss_pred C-----CCcccchHHHHHHhcCceeeeeecc--cCCCC----CCccC----------CCccEEEEeeCCCccccCCCccc
Confidence 1 1367889999999999999999985 33443 33321 58999999999999999987631
Q ss_pred cceeeccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcC-CCCEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccC
Q 015139 165 TELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAA 242 (412)
Q Consensus 165 ~~~~~~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r-~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~ 242 (412)
..+ .+++++ ++|||+++|||+|+|||+|++| ++|||+|||+|||+++++|||++|+||+ ++||
T Consensus 141 -------~~~-~eva~~~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva-~~yP------ 205 (348)
T COG0473 141 -------LGG-GEVAIDTKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVA-KEYP------ 205 (348)
T ss_pred -------cCC-CeEEEEEEeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHh-hcCC------
Confidence 011 248999 9999999999999999999999 6899999999999999999999999995 9999
Q ss_pred CeEEceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEcccccccccccccccc
Q 015139 243 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 321 (412)
Q Consensus 243 ~I~~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~dia 321 (412)
+|+++|+|||+++||||++|++| ||||+|||||||||+||+|+|||||+||||+|++..++||||+||||| |||
T Consensus 206 dv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAP-----DIA 280 (348)
T COG0473 206 DVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAP-----DIA 280 (348)
T ss_pred CcchhHHhHHHHHHHHhhCccccCEEEEccchhHHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCcc-----ccc
Confidence 99999999999999999999999 999999999999999999999999999999998522699999999999 999
Q ss_pred CCCcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHc-CCCCccccccccCCCCCcccccCHHHHHHHH
Q 015139 322 GGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVES-GKMTKDLALIIHGSKMTREHYLNTEEFIDAV 400 (412)
Q Consensus 322 Gk~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~-G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV 400 (412)
|||| |||+|+|||++|||+|+|+ .++|++|++||+++|++ |++|+||| | .++|.||+|+|
T Consensus 281 Gkgi-ANPiA~IlS~aMML~~~g~-------~~~A~~Ie~Av~~vl~~~g~~T~Dlg----g-------~~~T~e~~d~I 341 (348)
T COG0473 281 GKGI-ANPIATILSAAMMLRHLGE-------KEAADAIENAVEKVLAEGGIRTPDLG----G-------NATTSEVGDAI 341 (348)
T ss_pred CCCc-cChHHHHHHHHHHHHHhCC-------chHHHHHHHHHHHHHHcCCCCCcccC----C-------CccHHHHHHHH
Confidence 9999 9999999999999999873 56999999999999995 69999998 7 68899999999
Q ss_pred HHHHHH
Q 015139 401 ADDLRA 406 (412)
Q Consensus 401 ~~~l~~ 406 (412)
+++|..
T Consensus 342 ~~~l~~ 347 (348)
T COG0473 342 AKALAS 347 (348)
T ss_pred HHHHhc
Confidence 999863
No 2
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=1.9e-108 Score=830.85 Aligned_cols=402 Identities=75% Similarity=1.209 Sum_probs=364.4
Q ss_pred cceeecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCch
Q 015139 4 QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEA 83 (412)
Q Consensus 4 ~~~~m~~~I~vi~GDGiGpEv~~~~~~vl~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~ 83 (412)
+||||+.|++++.||+|.+.+|+-+++.|+.+.++|+|+++++|.+++++||+++|+++++++++++++||||++||...
T Consensus 1 ~~~~~~~p~v~~~g~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~ 80 (409)
T TIGR00127 1 SKIKVANPVVEMDGDEMTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEA 80 (409)
T ss_pred CCccccCCeEEecCcHHHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred hHHHHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCc-cceeeccCC
Q 015139 84 RVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGK-LKLVFEGKD 162 (412)
Q Consensus 84 ~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrent-eg~y~g~~~ 162 (412)
++.++.|.++|+|||++||+.||||+|+|||.+++++++.|+|.+||+++||++++.|.++|++++|||| ||+|+|.++
T Consensus 81 ~~~~~~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~ 160 (409)
T TIGR00127 81 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDG 160 (409)
T ss_pred cccccccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCC
Confidence 4445566778999999999999999999999889999999999999999999999999999999999999 999999875
Q ss_pred c-ccceeeccccCCCceEEEeeeCHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHHHHHhhcCCcccc
Q 015139 163 E-KTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA 241 (412)
Q Consensus 163 ~-~~~~~~~~~~~~~~~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~ 241 (412)
. ++...++++...++++.+.++||+++|||+|+||+||++|+++||+|||+|||+.+||+|+++|+||++++||++|++
T Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~T~~~~eRIar~AF~~A~~~~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~ 240 (409)
T TIGR00127 161 TQKVTLKVYDFEEGGGVAMAMYNTDESIEGFAHSSFQLALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEA 240 (409)
T ss_pred CcccceeeeeccCCCCeEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccC
Confidence 2 111122222211456777779999999999999999999998999999999999999999999999965799999999
Q ss_pred CCeEEceeeHHHHHHHHHhCCCccEEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEcccccccccccccccc
Q 015139 242 AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 321 (412)
Q Consensus 242 ~~I~~~~~~VDa~~~~lv~~P~~FVivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~dia 321 (412)
++|+++|++||++|||||++|++|||||+|||||||||++|+++|||||+||+|+|+++...+|||+|||||++|+++||
T Consensus 241 ~~I~~~~~lVDa~~m~lv~~P~~fViv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~HGSApdi~~~~ia 320 (409)
T TIGR00127 241 LGIWYEHRLIDDMVAQALKSEGGFIWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAAHGTVTRHYRMYQK 320 (409)
T ss_pred CCEEEEEeeHHHHHHHHhhCCCCcEEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEeccccCCCcccchhhhC
Confidence 99999999999999999999999999999999999999999999999999999999886235789999999988888889
Q ss_pred CC-CcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCccc----cccccCCCCCcccccCHHHH
Q 015139 322 GG-ETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDL----ALIIHGSKMTREHYLNTEEF 396 (412)
Q Consensus 322 Gk-~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dl----g~~~~G~~~~~~~~~sT~e~ 396 (412)
|| ++ |||+|+|||++|||+|+|+++.+..+.++|++|++||.+|+++|++|+|| | |+.+.+++.++|+||
T Consensus 321 Gk~~~-ANP~A~IlS~ammL~~lg~~~~~~g~~~~A~~Ie~Av~~~i~~g~~T~Dl~~~~G----G~~~~~~~~~~T~e~ 395 (409)
T TIGR00127 321 GQETS-TNSIASIFAWSRGLAHRAKLDNNPELSKFANILESACINTVEAGIMTKDLALILG----GSPVERSAYLNTEEF 395 (409)
T ss_pred CCCCc-cChHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHhcCCcccccccccC----CCcccCCCCcCHHHH
Confidence 96 77 99999999999999999998877778999999999999999999999999 5 633344456999999
Q ss_pred HHHHHHHHHHHhcc
Q 015139 397 IDAVADDLRARLSG 410 (412)
Q Consensus 397 ~daV~~~l~~~~~~ 410 (412)
+|+|+++|++.|.+
T Consensus 396 ~daV~~~L~~~~~~ 409 (409)
T TIGR00127 396 IDAVEERLKKKIAA 409 (409)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887754
No 3
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=3.3e-108 Score=838.90 Aligned_cols=401 Identities=81% Similarity=1.275 Sum_probs=368.0
Q ss_pred CccceeecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCC
Q 015139 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD 81 (412)
Q Consensus 2 ~~~~~~m~~~I~vi~GDGiGpEv~~~~~~vl~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~ 81 (412)
.|+||+|+.||++|+|||||+|||+.++++|+.++++|+|+++|+|.+++++||+++|+|++++|++++|+||||++||.
T Consensus 70 ~~~ki~~~~piv~~~GDem~r~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~ 149 (483)
T PLN03065 70 AADRIKVQNPIVEMDGDEMTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPD 149 (483)
T ss_pred hhccccccCCeEEecCCcchHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhHHHHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEe----------cC
Q 015139 82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQ----------GP 151 (412)
Q Consensus 82 ~~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~viv----------re 151 (412)
..++.|++|.+.|+|||++||+.||||+|+|||.++++|++.|+|..||+|.||+++|.|.++|++++ ||
T Consensus 150 ~~rv~e~~lk~~w~SpN~tiR~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rE 229 (483)
T PLN03065 150 EARVKEFGLKSMWRSPNGTIRNILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPE 229 (483)
T ss_pred cccccccccccccCCccHHHHHHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecC
Confidence 77677889988999999999999999999999999999999999999999999999999999999999 88
Q ss_pred CccceeeccCCcccceeeccccCCCceEEEeeeCHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHHHH
Q 015139 152 GKLKLVFEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVY 231 (412)
Q Consensus 152 nteg~y~g~~~~~~~~~~~~~~~~~~~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~ev~ 231 (412)
|+|+ +. +++++++.+ ++++.+.++|+++++||+|+||+||++|+++||++||+||||.+||+|+++|+||+
T Consensus 230 nte~---~~-----e~~v~~f~~-~gva~~~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~dif~eVa 300 (483)
T PLN03065 230 DGNA---PV-----ELDVYDFKG-PGVALAMYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVY 300 (483)
T ss_pred CCCC---cc-----eeEeeccCC-CCeEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHHHHHHH
Confidence 8875 22 223445554 67888888999999999999999999999999999999999999999999999997
Q ss_pred HhhcCCccccCCeEEceeeHHHHHHHHHhCCCccEEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEcccccc
Q 015139 232 EANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 311 (412)
Q Consensus 232 a~~yp~~~~~~~I~~~~~~VDa~~~~lv~~P~~FVivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGS 311 (412)
.++|..+|++.+|+++|++||+|+||||++|++|||||+|||||||||++|+++|||||+||+|+|+++.+++|||+|||
T Consensus 301 ~~eyk~~yp~~~I~~e~~lIDa~~~~lvk~P~~FViv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~HGS 380 (483)
T PLN03065 301 EEQWKQKFEEHSIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGT 380 (483)
T ss_pred HHhhhhcCCCCCceEEeeeHHHHHHHHHhCCCCcEEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCcCc
Confidence 66777777777899999999999999999999999999999999999999999999999999999998734799999999
Q ss_pred ccccccccccCCCcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCccccc
Q 015139 312 VTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYL 391 (412)
Q Consensus 312 Ap~~~~~diaGk~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~ 391 (412)
||+||+.+|+||+++|||+|+|||++|||+|+|++++|+.+.++|++|++||.+|+++|++|+|||.+.+|+.+++++.+
T Consensus 381 apd~~~~~iaGk~t~ANPiA~IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~G~~T~DLg~~~~G~~~~~~~~~ 460 (483)
T PLN03065 381 VTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEELLDFVHKLESACIETVESGKMTKDLAILIHGPKVSREFYL 460 (483)
T ss_pred CccccchhccCCCCCcChHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHcCCcccccccccCCCcccCCCCc
Confidence 99999999999996699999999999999999999888889999999999999999999999999633324222234469
Q ss_pred CHHHHHHHHHHHHHHHhccC
Q 015139 392 NTEEFIDAVADDLRARLSGK 411 (412)
Q Consensus 392 sT~e~~daV~~~l~~~~~~~ 411 (412)
+|+||+|+|+++|+..|.+.
T Consensus 461 ~T~ef~daV~~~L~~~~~~~ 480 (483)
T PLN03065 461 NTEEFIDAVAQTLATKRGEP 480 (483)
T ss_pred CHHHHHHHHHHHHHHHhccC
Confidence 99999999999999887654
No 4
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=3.7e-108 Score=828.33 Aligned_cols=394 Identities=72% Similarity=1.160 Sum_probs=345.9
Q ss_pred ccceeecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCc
Q 015139 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (412)
Q Consensus 3 ~~~~~m~~~I~vi~GDGiGpEv~~~~~~vl~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~ 82 (412)
|+|||++++|++||||||||||+++++++|++++++|+|+++++|+++++++|+++|++++++++++|++||||++||..
T Consensus 1 ~~~~~~~~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~ 80 (402)
T PRK08299 1 MAKIKVKNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDE 80 (402)
T ss_pred CCccccCCceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred hhHHHHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEec--------CCcc
Q 015139 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQG--------PGKL 154 (412)
Q Consensus 83 ~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivr--------ente 154 (412)
.++.+.++.++++|+|++|||+||||+|+||++++++|++.|++.+|++++||||||.|.++|++++| ||++
T Consensus 81 ~~~~~~~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~~~ 160 (402)
T PRK08299 81 ARVKEFNLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTKPIVIGRHAYGDQYRATDFKVPGKGKLTLVFTGED 160 (402)
T ss_pred ccccccCccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCCCEEEEecccCCcccceeEEeccCccceeeeecCC
Confidence 21111123345889999999999999999999888888888999899999999999999999999988 6665
Q ss_pred ceeeccCCcccceeeccccCCCceEEEeeeCHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHHHHHhh
Q 015139 155 KLVFEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAN 234 (412)
Q Consensus 155 g~y~g~~~~~~~~~~~~~~~~~~~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~ 234 (412)
|. ..+ ++.+++.+ .+++...++||+++|||+|+||+||++|+++||+|||+|||+.+||||+++|+||++++
T Consensus 161 g~--~~e-----~~~~~~~~-~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~~kVt~v~KaNVlk~t~glf~~~~~evA~~~ 232 (402)
T PRK08299 161 GE--PIE-----HEVHDFPG-AGVAMGMYNLDESIRDFARASFNYGLDRKYPVYLSTKNTILKAYDGRFKDIFQEVYEAE 232 (402)
T ss_pred Cc--ccc-----ceeccccc-CceeEEEeecHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhhHHHHHHHHHHHHHh
Confidence 52 111 11211111 23343355999999999999999999999899999999999999999999999995358
Q ss_pred cCCccccCCeEEceeeHHHHHHHHHhCCCccEEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccc
Q 015139 235 WKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 314 (412)
Q Consensus 235 yp~~~~~~~I~~~~~~VDa~~~~lv~~P~~FVivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~ 314 (412)
||++|.+++|++++++||++|||||++|++|||||+|||||||||++|+|+|||||+||+|+|+++.++||||+|||||+
T Consensus 233 yp~~~~~~~i~~~~~~vDa~~~~lv~~P~~fVivt~NlfGDIlSDlaa~l~GglG~apSanig~~~~~a~FEp~HGSAPD 312 (402)
T PRK08299 233 FKEKFEAAGITYEHRLIDDMVASALKWEGGYVWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTR 312 (402)
T ss_pred CccccccCcEEEEEeeHHHHHHHHHhCcCCcEEEEeccccchhhhHHHhhcCCcccccceeeCCCCCcEEEecCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988512899999999998
Q ss_pred cccccccCCCcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCcccccCHH
Q 015139 315 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTE 394 (412)
Q Consensus 315 ~~~~diaGk~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~ 394 (412)
+|+++|||||++|||+|||||++|||+|||+++.++.+.++|++|++||.+++++|.+|+|||...+|. ...+||+
T Consensus 313 ~~~~~IaGk~~~ANP~A~IlS~amML~~LG~~~~~~~l~~~a~~I~~Av~~~l~~g~~T~Dlg~~~g~~----~g~~tT~ 388 (402)
T PRK08299 313 HYRQHQKGEETSTNPIASIFAWTRGLAHRGKLDGNPELVKFADTLEKVCIETVESGFMTKDLALLVGPD----QKWLTTE 388 (402)
T ss_pred cccccccCCCCccCHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHHcCCcCccchhccCCC----CCCcCHH
Confidence 888889999944999999999999999999877777889999999999999999999999995110020 0159999
Q ss_pred HHHHHHHHHHHHHh
Q 015139 395 EFIDAVADDLRARL 408 (412)
Q Consensus 395 e~~daV~~~l~~~~ 408 (412)
||+|+|+++|.+.|
T Consensus 389 e~~daIi~~l~~~~ 402 (402)
T PRK08299 389 EFLDAIDENLEKAL 402 (402)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999997654
No 5
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-107 Score=826.00 Aligned_cols=407 Identities=71% Similarity=1.173 Sum_probs=370.2
Q ss_pred CccceeecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCC
Q 015139 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD 81 (412)
Q Consensus 2 ~~~~~~m~~~I~vi~GDGiGpEv~~~~~~vl~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~ 81 (412)
.|+||||+.|++.+.||+|.+-+|+-+++.|+.+.++|+|+++++|.+++++||+++|++++++|++++++||||++||.
T Consensus 2 ~~~~~~~~~~~v~~~~~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~ 81 (413)
T PTZ00435 2 TGGKIKVKNPVVELDGDEMTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPD 81 (413)
T ss_pred CcccccccCCeEEecccHHHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhHHHHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCc-cceeecc
Q 015139 82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGK-LKLVFEG 160 (412)
Q Consensus 82 ~~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrent-eg~y~g~ 160 (412)
.+++.+++|.++|+|||++||+.||||+|+|||.++++|++.|+|++||+++|||++|.|.++|++++|||| |++|.+.
T Consensus 82 ~~~~~~~~l~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~ 161 (413)
T PTZ00435 82 EARVKEFNLKKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPA 161 (413)
T ss_pred cccccccccccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecC
Confidence 643336677778999999999999999999999888999999999999999999999999999999999999 9999987
Q ss_pred -CCcccceeeccccCCCceEEEeeeCHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHHHHHhhcCCcc
Q 015139 161 -KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 239 (412)
Q Consensus 161 -~~~~~~~~~~~~~~~~~~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~ 239 (412)
++.|....+++|.. ++++.+.++||+++|||+|+||+||++|+++||+|||+|||+.+||||+++|+||++++||++|
T Consensus 162 ~g~~~~~~~~~~~~~-~~v~~~~~~Tr~~~eRIar~AF~~A~~r~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~ 240 (413)
T PTZ00435 162 DGSEPQRVDVFDFKG-GGVAMGMYNTDESIEGFARSCFQYALDRKMPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKF 240 (413)
T ss_pred CCCcceeeeeeccCC-CCeeEEEEeCHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhHHHHHHHHHHHHHHhCcccc
Confidence 54555555555554 5676668999999999999999999999889999999999999999999999999545799999
Q ss_pred ccCCeEEceeeHHHHHHHHHhCCCccEEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEcccccccccccccc
Q 015139 240 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 319 (412)
Q Consensus 240 ~~~~I~~~~~~VDa~~~~lv~~P~~FVivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~d 319 (412)
.+++|+++|++||++|||||++|++|||||+|||||||||++|+|+|||||+||+|+|+++.+++|||+|||||++|++|
T Consensus 241 ~~~~I~~~~~lVDa~~m~lv~~P~~fViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp~HGSApdi~~~~ 320 (413)
T PTZ00435 241 EKAGLWYEHRLIDDMVAQAIKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRQH 320 (413)
T ss_pred ccCCEEEEEeeHHHHHHHHhhCCCCeEEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEcCcCCccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999998851299999999999888888
Q ss_pred ccCC-CcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCC-CCCcccccCHHHHH
Q 015139 320 QKGG-ETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGS-KMTREHYLNTEEFI 397 (412)
Q Consensus 320 iaGk-~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~-~~~~~~~~sT~e~~ 397 (412)
|+|| ++ |||+|||||++|||+|+|+++.++.+.++|++|++||.+|+++|++|+|||...+|+ ++++++.++|+||+
T Consensus 321 iaGk~~~-ANP~A~Ils~ammL~~lg~~~~~~~~~~~A~~ie~Av~~~i~~g~~T~Dlg~~~~G~~~~~~~~~~~T~e~~ 399 (413)
T PTZ00435 321 QKGKETS-TNSIASIFAWTRGLAHRAKLDNNQELVKFCQALERSCIETIEAGFMTKDLAICVHGSSKVTRSDYLNTEEFI 399 (413)
T ss_pred hcCCCCc-cChHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcCCCccccccccCCCccccCCCCcCHHHHH
Confidence 8996 67 999999999999999999888777889999999999999999999999996110141 23344579999999
Q ss_pred HHHHHHHHHHhcc
Q 015139 398 DAVADDLRARLSG 410 (412)
Q Consensus 398 daV~~~l~~~~~~ 410 (412)
|+|+++|.++|.+
T Consensus 400 daV~~~L~~~~~~ 412 (413)
T PTZ00435 400 DKVAEKLKKKLGA 412 (413)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988764
No 6
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=2.8e-106 Score=816.41 Aligned_cols=398 Identities=90% Similarity=1.379 Sum_probs=343.0
Q ss_pred CCccceeecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCC
Q 015139 1 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITP 80 (412)
Q Consensus 1 ~~~~~~~m~~~I~vi~GDGiGpEv~~~~~~vl~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p 80 (412)
||++||||+.|+++|+|||||||++++++++|++++++|+|+++++|++++++||+++|++++++++++|++||||++||
T Consensus 1 ~~~~~~~~~~p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp 80 (410)
T PLN00103 1 MAFEKIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITP 80 (410)
T ss_pred CCcccccccCCeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCcc----------CCccEEEec
Q 015139 81 DEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQY----------RATDTVIQG 150 (412)
Q Consensus 81 ~~~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y----------~~id~vivr 150 (412)
...++.|.++.+.++|+|++|||+||||+|+|||.++++|++.|++.+|+.+.|+..++.| .++|+|+||
T Consensus 81 ~~~~~~~~~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivR 160 (410)
T PLN00103 81 DEARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVP 160 (410)
T ss_pred ccccccccCccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEe
Confidence 5432223334446899999999999999999997778889889999899999999999998 455667999
Q ss_pred CCccceeeccCCcccceeeccccCCCceEEEee-eCHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHH
Q 015139 151 PGKLKLVFEGKDEKTELEVYNFTGEGGVALSMY-NTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQE 229 (412)
Q Consensus 151 enteg~y~g~~~~~~~~~~~~~~~~~~~a~~~~-~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~e 229 (412)
|||||+| +. .+.++.+..++++ ++ +|+++++||+|+||+||++|+++||+|||+|||+.+||+|+++|+|
T Consensus 161 ENTEg~y-e~-------~~~~~~g~~~v~~-~~~~T~~~~~Riar~AFe~A~~r~~~vt~v~KaNVlk~~dglf~~~~~e 231 (410)
T PLN00103 161 EGKDEKT-EL-------EVYNFTGAGGVAL-SMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQE 231 (410)
T ss_pred cCCCcee-EE-------EeeccCCCcceEE-EEEcCHHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhhHHHHHHHHHH
Confidence 9999998 21 1111122123333 55 4999999999999999999998999999999999999999999999
Q ss_pred HHHhhcCCccccCCeEEceeeHHHHHHHHHhCCCccEEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEcccc
Q 015139 230 VYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH 309 (412)
Q Consensus 230 v~a~~yp~~~~~~~I~~~~~~VDa~~~~lv~~P~~FVivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~H 309 (412)
|++++|..+|.+++|+++|++||++||+||++|++|||||+|||||||||++|+|+|||||+||+|+|+++.++||||+|
T Consensus 232 va~~~~~~eyp~~~I~~~~~lVDa~a~~lv~~P~~fViv~~NLfGDIlSDlaA~l~GslGlapSanig~~~~~~~FEp~H 311 (410)
T PLN00103 232 VYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH 311 (410)
T ss_pred HHHhhhhhhCCCCceEEEEeEHHHHHHHHhcCCCCCEEEEcccchHHHHHHHHHhcCchhhhhccccCCCCCcEEEeCCC
Confidence 96533333333446999999999999999999999999999999999999999999999999999999875237999999
Q ss_pred ccccccccc-cccCCCcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCcc
Q 015139 310 GTVTRHYRV-HQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTRE 388 (412)
Q Consensus 310 GSAp~~~~~-diaGk~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~ 388 (412)
||||++|+. ||||||+ |||+|+|||++|||+|+++|++|+.+.++|++|++||.+++++|.+|+||+....|+.+.++
T Consensus 312 GSApd~~~~~diaGk~i-ANP~A~IlS~ammL~~l~~~~~~~g~~~~a~~i~~Av~~~l~~G~~T~Dl~~~~~gg~~~~~ 390 (410)
T PLN00103 312 GTVTRHYRVHQKGGETS-TNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACVGTVESGKMTKDLALLIHGPKVSRD 390 (410)
T ss_pred CcCcccchhhhhcCCCc-cChHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHcCCCCcccccccCCCcccCC
Confidence 999955444 5999999 99999999999999999988777779999999999999999999999999411113222233
Q ss_pred cccCHHHHHHHHHHHHHHHh
Q 015139 389 HYLNTEEFIDAVADDLRARL 408 (412)
Q Consensus 389 ~~~sT~e~~daV~~~l~~~~ 408 (412)
+.++|+||+|+|+++|++.|
T Consensus 391 ~~~~T~e~~daV~~~l~~~~ 410 (410)
T PLN00103 391 QYLNTEEFIDAVAEELKARL 410 (410)
T ss_pred CCcCHHHHHHHHHHHHHhhC
Confidence 45899999999999997654
No 7
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=8.9e-105 Score=791.17 Aligned_cols=330 Identities=21% Similarity=0.262 Sum_probs=302.4
Q ss_pred ecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchhHHH
Q 015139 8 VANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKE 87 (412)
Q Consensus 8 m~~~I~vi~GDGiGpEv~~~~~~vl~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e 87 (412)
|+++|++|||||||||||+++++||.+.+++|+|+++++|+++++++|+++|++++++++++|++||||+++|.+.
T Consensus 1 ~~~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~~---- 76 (334)
T PRK08997 1 MKQTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVGE---- 76 (334)
T ss_pred CCcEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCCc----
Confidence 6689999999999999999999999877899999999999999999999999999999999999999999999543
Q ss_pred HHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCcccce
Q 015139 88 FVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKTEL 167 (412)
Q Consensus 88 ~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~~~~ 167 (412)
+++|+++.|||+||||+|+||+++ +|++ .+| +.++|++||||||||+|+|.++.
T Consensus 77 -----~~~~~~~~LR~~ldlyanvRP~k~--~~g~----~~~-----------~~~iD~vivREnteG~Y~g~~~~---- 130 (334)
T PRK08997 77 -----GFTSINVTLRKKFDLYANVRPVLS--FPGT----KAR-----------YDNIDIITVRENTEGMYSGEGQT---- 130 (334)
T ss_pred -----CccchHHHHHHHcCCeEEEeeccc--CCCC----CCc-----------cCCcCEEEEEeccCceecCccce----
Confidence 457889999999999999999854 3433 232 45999999999999999997642
Q ss_pred eeccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCeE
Q 015139 168 EVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIW 245 (412)
Q Consensus 168 ~~~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~-~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~ 245 (412)
.. .+ ..++++ ++|||+++|||+|+||+||++|+ ++||+|||+|||+.|||||+++|+|| +++|| +|+
T Consensus 131 -~~--~~-~~~a~~~~~~Tr~~~eRi~r~Af~~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~ev-a~~yP------~V~ 199 (334)
T PRK08997 131 -VS--ED-GETAEATSIITRKGAERIVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLKVAREV-ALRYP------DIE 199 (334)
T ss_pred -ec--CC-CceEEEEEEeeHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcchhhhHHHHHHHHHH-HhhCC------CeE
Confidence 10 11 237889 99999999999999999999996 46999999999999999999999999 58999 999
Q ss_pred EceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccCCC
Q 015139 246 YEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGE 324 (412)
Q Consensus 246 ~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk~ 324 (412)
++|+|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+||||| ||||||
T Consensus 200 ~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~HGSAP-----dIAGk~ 272 (334)
T PRK08997 200 FEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVGGLGMAPGANIGRD--AAIFEAVHGSAP-----DIAGKN 272 (334)
T ss_pred EEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCCCCcCcceeECCC--ceEEECCCCchh-----hhCCCC
Confidence 99999999999999999999 9999999999999999999999999999999987 499999999999 999999
Q ss_pred cccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcC-CCCccccccccCCCCCcccccCHHHHHHHHHHH
Q 015139 325 TSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVADD 403 (412)
Q Consensus 325 i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~ 403 (412)
+ |||+|+|||++|||+||| +.++|++|++||.+++++| .+|+||| | .+||+||+|+|+++
T Consensus 273 i-ANP~a~IlS~amML~~lG-------~~~~A~~i~~AV~~vl~~G~~~T~DlG----G-------~a~T~e~~~av~~~ 333 (334)
T PRK08997 273 L-ANPTSVILAAIQMLEYLG-------MPDKAERIRKAIVAVIEAGDRTTRDLG----G-------THGTTDFTQAVIDR 333 (334)
T ss_pred c-cCcHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHHHHHhh
Confidence 9 999999999999999987 5889999999999999999 5799998 7 79999999999987
Q ss_pred H
Q 015139 404 L 404 (412)
Q Consensus 404 l 404 (412)
|
T Consensus 334 l 334 (334)
T PRK08997 334 L 334 (334)
T ss_pred C
Confidence 5
No 8
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=1e-104 Score=804.81 Aligned_cols=357 Identities=16% Similarity=0.158 Sum_probs=310.4
Q ss_pred ecccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCch
Q 015139 8 VANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEA 83 (412)
Q Consensus 8 m~~~I~vi~GDGiGpEv~~~~~~vl~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~ 83 (412)
|.++|+||||||||||||+++++||.+. +++|+|+++++|+++++++|++||++++++|+++|++||||+++|...
T Consensus 45 ~~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~ 124 (409)
T PLN02329 45 KRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWD 124 (409)
T ss_pred ceEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCC
Confidence 4589999999999999999999998643 689999999999999999999999999999999999999999998532
Q ss_pred hHHHHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCc
Q 015139 84 RVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDE 163 (412)
Q Consensus 84 ~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~ 163 (412)
. .....+ ..+++++|||+||||+|+||++. +|++.. .+|++- ..+.++|+|||||||||+|+|.++.
T Consensus 125 ~--~~~~~~-~e~~ll~LRk~ldLyaNvRPvr~--~pg~~~--~splk~------~~~~~iD~vIVREnTEG~Y~G~~~~ 191 (409)
T PLN02329 125 K--NEKHLR-PEMALFYLRRDLKVFANLRPATV--LPQLVD--ASTLKK------EVAEGVDMMIVRELTGGIYFGEPRG 191 (409)
T ss_pred C--Cccccc-ccccHHHHHHHcCCeEeeeeeec--cCCCCC--cCcccc------cccCCceEEEEEECCCCeecCCCcc
Confidence 1 000001 12569999999999999999865 354432 145541 1357999999999999999997642
Q ss_pred ccceeeccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccC
Q 015139 164 KTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAA 242 (412)
Q Consensus 164 ~~~~~~~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~ 242 (412)
. .... .+ .+++++ ++|||+++|||+|+||+||++|+++||+|||+|||+ +++||+++|+|| +++||
T Consensus 192 ~---~~~~-~~-~~~a~~~~~iTr~~~eRI~r~AFe~A~~r~~kVT~v~KaNVl~-t~~lf~~~~~ev-A~eyP------ 258 (409)
T PLN02329 192 I---TINE-NG-EEVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLD-ASILWRKRVTAL-ASEYP------ 258 (409)
T ss_pred e---eccc-CC-ceeEEEeEEecHHHHHHHHHHHHHHHHHcCCeEEEEECCCCcc-chHHHHHHHHHH-HhhCC------
Confidence 1 0000 12 467899 999999999999999999999988999999999999 999999999999 68999
Q ss_pred CeEEceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEcccccccccccccccc
Q 015139 243 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 321 (412)
Q Consensus 243 ~I~~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~dia 321 (412)
+|+++++|||++|||||++|++| ||||+|||||||||++|+|+|||||+||+|+|+++ ++||||+||||| |||
T Consensus 259 dV~~~~~~VDa~a~~LV~~P~~FDVIVt~NLfGDILSDlaa~l~GglGlaPSanig~~~-~a~FEpvHGSAP-----dIA 332 (409)
T PLN02329 259 DVELSHMYVDNAAMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESG-PGLFEPIHGSAP-----DIA 332 (409)
T ss_pred CcccchhHHHHHHHHHhcCchhCCEEEEcCcccccccHHHHHhcCCcccCceeecCCCC-ceeeeccCCCch-----hhc
Confidence 99999999999999999999999 99999999999999999999999999999999886 599999999999 999
Q ss_pred CCCcccChhhHHHHHHHHHHh-hcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCcccccCHHHHHHHH
Q 015139 322 GGETSTNSIASIFAWSRGLAH-RAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAV 400 (412)
Q Consensus 322 Gk~i~ANP~a~IlS~ammL~~-lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV 400 (412)
|||+ |||+|+|||++|||+| || +.++|++|++||.+++++|.+|+||+.. +| +.++|+||+|+|
T Consensus 333 Gk~i-ANP~A~ILS~amML~~~Lg-------~~~~A~~I~~AV~~vl~~g~~T~Dl~~~-Gg------~~~~T~e~~daI 397 (409)
T PLN02329 333 GQDK-ANPLATILSAAMLLKYGLG-------EEKAAKRIEDAVVDALNKGFRTGDIYSP-GN------KLVGCKEMGEEV 397 (409)
T ss_pred CCcc-cChHHHHHHHHHHHhhhCC-------CHHHHHHHHHHHHHHHHcCCcCcccccC-CC------CccCHHHHHHHH
Confidence 9999 9999999999999999 77 5899999999999999999999999310 05 138999999999
Q ss_pred HHHHHHHhccC
Q 015139 401 ADDLRARLSGK 411 (412)
Q Consensus 401 ~~~l~~~~~~~ 411 (412)
+++|+.++++.
T Consensus 398 i~~l~~~~~~~ 408 (409)
T PLN02329 398 LKSVDSKVPAT 408 (409)
T ss_pred HHHHHhhCCCC
Confidence 99999988864
No 9
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-104 Score=794.61 Aligned_cols=339 Identities=18% Similarity=0.184 Sum_probs=303.8
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC-----CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchh
Q 015139 10 NPIVEMDGDEMTRVFWKSIKDKLIFP-----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (412)
Q Consensus 10 ~~I~vi~GDGiGpEv~~~~~~vl~~~-----~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~ 84 (412)
++|+||||||||||||+++++||.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+.+
T Consensus 4 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~~~ 83 (352)
T PRK08194 4 FKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKLVP 83 (352)
T ss_pred eEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCcCC
Confidence 78999999999999999999998643 6899999999999999999999999999999999999999999995321
Q ss_pred HHHHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCcc
Q 015139 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEK 164 (412)
Q Consensus 85 ~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~ 164 (412)
. ..+.+++++.|||+||||+|+||++. +|+ ..+|++ .+.++|+|||||||||+|+|.++..
T Consensus 84 --~---~~~~~~~~l~LR~~ldLyaNvRP~k~--~pg----~~splk--------~~~~iD~vivREnteG~Y~g~~~~~ 144 (352)
T PRK08194 84 --D---HISLWGLLIKIRREFEQVINIRPAKQ--LRG----IKSPLA--------NPKDFDLLVVRENSEGEYSEVGGRI 144 (352)
T ss_pred --C---CCCchhhHHHHHHHcCCEEEEEeeec--CCC----CCCCCC--------CCCCCCEEEEEeCCCccccCCCccc
Confidence 0 01234459999999999999999854 343 335654 1468999999999999999976431
Q ss_pred cceeeccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCC
Q 015139 165 TELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 243 (412)
Q Consensus 165 ~~~~~~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~ 243 (412)
. .+..+++++ ++|||+++|||+|+||+||++|+++||+|||+|||+.||+||+++|+|| +++|| +
T Consensus 145 ~-------~g~~~~a~~~~~~Tr~~~eRI~r~Af~~A~~r~~~Vt~v~KaNvl~~t~~lf~~~~~ev-a~~yp------~ 210 (352)
T PRK08194 145 H-------RGEDEIAIQNAVFTRKGTERAMRYAFELAAKRRKHVTSATKSNGIVHSMPFWDEVFQEV-GKDYP------E 210 (352)
T ss_pred c-------CCccceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEeCcchhhhhHHHHHHHHHHH-HhhCC------C
Confidence 0 111457889 9999999999999999999999788999999999999999999999999 68999 9
Q ss_pred eEEceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCc-eEEEcccccccccccccccc
Q 015139 244 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQK 321 (412)
Q Consensus 244 I~~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~-~a~FEp~HGSAp~~~~~dia 321 (412)
|+++|+|||++|||||++|++| ||||+|||||||||++|+|+||+||+||+|+|+++. ++||||+||||| |||
T Consensus 211 V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~alFEp~HGSAP-----diA 285 (352)
T PRK08194 211 IETDSQHIDALAAFFVTRPEEFDVIVASNLFGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVHGSAP-----DIA 285 (352)
T ss_pred ceeeehhHHHHHHHHhhChhhCcEEEEccchHHHHhHHHHHhcCCccccceeeecCCCCcceEEECCCCCch-----hhC
Confidence 9999999999999999999999 999999999999999999999999999999996632 489999999999 999
Q ss_pred CCCcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCcccccCHHHHHHHHH
Q 015139 322 GGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVA 401 (412)
Q Consensus 322 Gk~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~ 401 (412)
|||+ |||+|+|||++|||+||| ++++|++|++||.+++++|++|+||| | ++||+||+++|+
T Consensus 286 Gk~i-ANP~a~IlS~amML~~lg-------~~~~A~~i~~Av~~~l~~g~~T~DlG----G-------~~~T~e~~~ai~ 346 (352)
T PRK08194 286 GKGI-ANPIGQIWTAKLMLDHFG-------EEELGSHLLDVIEDVTEDGIKTPDIG----G-------RATTDEVTDEII 346 (352)
T ss_pred CCCc-CCcHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHcCCCcCcCC----C-------CcCHHHHHHHHH
Confidence 9999 999999999999999977 58999999999999999999999998 7 799999999999
Q ss_pred HHHH
Q 015139 402 DDLR 405 (412)
Q Consensus 402 ~~l~ 405 (412)
++|+
T Consensus 347 ~~l~ 350 (352)
T PRK08194 347 SRLK 350 (352)
T ss_pred HHHh
Confidence 9994
No 10
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=5.8e-104 Score=792.77 Aligned_cols=328 Identities=25% Similarity=0.261 Sum_probs=303.5
Q ss_pred cccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchhHHHH
Q 015139 9 ANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 88 (412)
Q Consensus 9 ~~~I~vi~GDGiGpEv~~~~~~vl~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~ 88 (412)
.++|++|||||||||||+++++||.+.+++|+|+++++|+++++++|+++|++++++|+++|++||||+++|...
T Consensus 41 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~~----- 115 (372)
T PLN00118 41 PITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPIGK----- 115 (372)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCccc-----
Confidence 378999999999999999999999888999999999999999999999999999999999999999999998532
Q ss_pred HhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCccccee
Q 015139 89 VLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKTELE 168 (412)
Q Consensus 89 ~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~~~~~ 168 (412)
.++|+|++|||+||||+|+||+++ +|++ .+ .+.++|+|||||||||+|+|.+++.
T Consensus 116 ----~~~s~~~~LRk~ldLyaNvRPvr~--~pg~----~~-----------~~~~iD~vIVREnteG~Y~g~~~~~---- 170 (372)
T PLN00118 116 ----GHRSLNLTLRKELGLYANVRPCYS--LPGY----KT-----------RYDDVDLVTIRENTEGEYSGLEHQV---- 170 (372)
T ss_pred ----cccCchHHHHHHcCCeeeeccccc--CCCc----cC-----------cccCceEEEEEecCCCcccceeeec----
Confidence 467889999999999999999854 3443 22 2569999999999999999975421
Q ss_pred eccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCeEE
Q 015139 169 VYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWY 246 (412)
Q Consensus 169 ~~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~~ 246 (412)
.++++++ ++|||+++|||+|+||+||++|++ +||+|||+|||+.|||||+++|+|| +++|| +|++
T Consensus 171 ------~~gv~~~~~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~ev-a~eyP------dI~~ 237 (372)
T PLN00118 171 ------VRGVVESLKIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREV-AEKYP------EIVY 237 (372)
T ss_pred ------cCCeEEEEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHH-HhhCC------CceE
Confidence 1467888 999999999999999999999964 6999999999999999999999999 68999 9999
Q ss_pred ceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccCCCc
Q 015139 247 EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGET 325 (412)
Q Consensus 247 ~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk~i 325 (412)
++++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ++||||+||||| ||||||+
T Consensus 238 ~~~~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~GglGlapSanig~~~-~a~FEpvHGSAP-----dIAGk~i 311 (372)
T PLN00118 238 EEVIIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGENG-LALAEAVHGSAP-----DIAGKNL 311 (372)
T ss_pred EeeeHHHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcCCcccCcceeecCCC-CeEEECCCCChh-----hhCCCCC
Confidence 9999999999999999999 99999999999999999999999999999999886 599999999999 9999999
Q ss_pred ccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcC-CCCccccccccCCCCCcccccCHHHHHHHHHHHH
Q 015139 326 STNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 404 (412)
Q Consensus 326 ~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~l 404 (412)
|||+|||||++|||+||| +.++|++|++||.+++++| ++|+||| | ++||+||+|+|+++|
T Consensus 312 -ANP~A~IlS~amML~~lG-------~~~~A~~I~~Av~~~l~~G~~~T~DlG----G-------~~sT~e~~dav~~~l 372 (372)
T PLN00118 312 -ANPTALLLSAVMMLRHLK-------LNEQAEQIHNAILNTIAEGKYRTADLG----G-------SSTTTDFTKAICDHL 372 (372)
T ss_pred -cCcHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHHHHHhhC
Confidence 999999999999999987 5899999999999999999 8999998 7 799999999999875
No 11
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=5.7e-104 Score=791.61 Aligned_cols=340 Identities=20% Similarity=0.191 Sum_probs=302.7
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC-----CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchh
Q 015139 10 NPIVEMDGDEMTRVFWKSIKDKLIFP-----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (412)
Q Consensus 10 ~~I~vi~GDGiGpEv~~~~~~vl~~~-----~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~ 84 (412)
++|++||||||||||++++++||.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|...|
T Consensus 4 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~~~ 83 (352)
T TIGR02089 4 YRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPALVP 83 (352)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCCCC
Confidence 78999999999999999999998643 5899999999999999999999999999999999999999999985322
Q ss_pred HHHHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCcc
Q 015139 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEK 164 (412)
Q Consensus 85 ~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~ 164 (412)
. ....++++++|||+||||+|+||+++ +|++ .+|++- ....++|+|||||||||+|+|.++..
T Consensus 84 ~-----~~~~~~~~l~LRk~ldLyaNvRP~~~--~~g~----~sp~k~------~~~~~iD~vivREnteG~Y~G~~~~~ 146 (352)
T TIGR02089 84 D-----HISLWGLLLKIRREFDQYANVRPAKL--LPGV----TSPLRN------CGPGDFDFVVVRENSEGEYSGVGGRI 146 (352)
T ss_pred C-----ccCchhhHHHHHHHcCCeEEEEEeec--CCCC----CCcccc------ccCCCCCEEEEEecCCcccccccccc
Confidence 0 01234569999999999999999864 3443 345431 12359999999999999999975321
Q ss_pred cceeeccccC-CCceEEE-eeeCHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccC
Q 015139 165 TELEVYNFTG-EGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAA 242 (412)
Q Consensus 165 ~~~~~~~~~~-~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~ 242 (412)
. .+ ..+++++ ++|||+++|||+|+||+||++|++|||+|||+|||+.|+|||+++|+|| +++||
T Consensus 147 ~-------~~~~~~~a~~~~~~tr~~~eRi~r~Af~~A~~rr~kVt~v~KaNvl~~t~~lf~~~~~ev-a~~yp------ 212 (352)
T TIGR02089 147 H-------RGTDEEVATQNAIFTRKGVERIMRFAFELAQKRRKHLTSATKSNGIRHSMPFWDEVFAEV-AAEYP------ 212 (352)
T ss_pred c-------CCccceeEEEeEEecHHHHHHHHHHHHHHHHHcCCCEEEEeCCcchhhhhHHHHHHHHHH-HhhCC------
Confidence 0 11 1357889 9999999999999999999999778999999999999999999999999 68999
Q ss_pred CeEEceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCc-eEEEccccccccccccccc
Q 015139 243 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQ 320 (412)
Q Consensus 243 ~I~~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~-~a~FEp~HGSAp~~~~~di 320 (412)
+|+++|+|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++. ++||||+||||| ||
T Consensus 213 ~v~~~~~~vD~~~~~lv~~P~~fDVivt~NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp~HGSAP-----di 287 (352)
T TIGR02089 213 DVEWDSYHIDALAARFVLKPETFDVIVASNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPVHGSAP-----DI 287 (352)
T ss_pred CceEeeehHHHHHHHHhcChhhCcEEEecccchhhhhHHHHHhcCCccccceEEecCCCCcceeeecCCCCch-----hh
Confidence 99999999999999999999999 999999999999999999999999999999997642 489999999999 99
Q ss_pred cCCCcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCcccccCHHHHHHHH
Q 015139 321 KGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAV 400 (412)
Q Consensus 321 aGk~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV 400 (412)
||||+ |||+|||||++|||+||| +.++|++|++||.+++++|++|+||| | ++||+||+|+|
T Consensus 288 AGk~i-ANP~a~Ils~amML~~lg-------~~~~A~~I~~Av~~~l~~g~~T~DlG----G-------~~sT~e~~~ai 348 (352)
T TIGR02089 288 AGKGI-ANPIGAIWTAAMMLEHLG-------EKEAGAKIMDAIERVTAAGILTPDVG----G-------KATTSEVTEAV 348 (352)
T ss_pred cCCCc-cCcHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHcCCccCCCC----C-------CcCHHHHHHHH
Confidence 99999 999999999999999987 58899999999999999999999998 7 78999999999
Q ss_pred HHHH
Q 015139 401 ADDL 404 (412)
Q Consensus 401 ~~~l 404 (412)
+++|
T Consensus 349 ~~~l 352 (352)
T TIGR02089 349 CNAL 352 (352)
T ss_pred HhhC
Confidence 9875
No 12
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-103 Score=782.27 Aligned_cols=322 Identities=24% Similarity=0.231 Sum_probs=298.4
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchhHHHHH
Q 015139 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (412)
Q Consensus 10 ~~I~vi~GDGiGpEv~~~~~~vl~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~ 89 (412)
++|++|||||||||||+++++||.+.+++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.
T Consensus 2 ~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~-------- 73 (330)
T PRK14025 2 HKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA-------- 73 (330)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc--------
Confidence 689999999999999999999998889999999999999999999999999999999999999999999873
Q ss_pred hhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCcccceee
Q 015139 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKTELEV 169 (412)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~~~~~~ 169 (412)
.|+++.|||+||||+|+||+++ +|++ .+| +.++|+|+|||||||+|+|.++..
T Consensus 74 -----~~~~~~LR~~ldlyanvRP~r~--~pg~----~~~-----------~~~iD~vivREnteG~Y~g~~~~~----- 126 (330)
T PRK14025 74 -----ADVIVKLRRILDTYANVRPVKS--YKGV----KCL-----------YPDIDYVIVRENTEGLYKGIEAEI----- 126 (330)
T ss_pred -----cchHHHHHHHcCCeEEEEEeec--CCCC----CCc-----------cCCcCEEEEEECCCceecCccccc-----
Confidence 2458999999999999999864 3432 232 458999999999999999986431
Q ss_pred ccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcC----C-CCEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCC
Q 015139 170 YNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQK----K-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 243 (412)
Q Consensus 170 ~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r----~-~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~ 243 (412)
.++++++ ++|||+++|||+|+||+||++| + ++||+|||+|||+.|||||+++|+|| +++|| +
T Consensus 127 -----~~~~~~~~~~~Tr~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl~~t~glf~e~~~ev-a~~yp------~ 194 (330)
T PRK14025 127 -----ADGVTVATRVITRKASERIFRFAFEMAKRRKKMGKEGKVTCAHKANVLKKTDGLFKKTFYEV-AKEYP------D 194 (330)
T ss_pred -----CCCceEEeEeccHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCchhhhhHHHHHHHHHH-HhhCC------C
Confidence 1467888 9999999999999999999999 4 46999999999999999999999999 58999 9
Q ss_pred eEEceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccC
Q 015139 244 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKG 322 (412)
Q Consensus 244 I~~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaG 322 (412)
|++++++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+||||| ||||
T Consensus 195 i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~HGSAP-----diAG 267 (330)
T PRK14025 195 IKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLVGGLGLAPSANIGDK--YGLFEPVHGSAP-----DIAG 267 (330)
T ss_pred eEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCCCCcccceeeCCC--cceeEcCCCCch-----hhCC
Confidence 9999999999999999999999 9999999999999999999999999999999987 499999999999 9999
Q ss_pred CCcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCcccccCHHHHHHHHHH
Q 015139 323 GETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVAD 402 (412)
Q Consensus 323 k~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~ 402 (412)
||+ |||+|+|||++|||+||| +.++|++|++||.+++++|++|+||| | ++||+||+|+|++
T Consensus 268 k~i-ANP~a~IlS~ammL~~lG-------~~~~A~~I~~Av~~vl~~g~~T~DlG----G-------~~~T~e~~~av~~ 328 (330)
T PRK14025 268 KGI-ANPTATILTAVLMLRHLG-------ENEEADKVEKALEEVLALGLTTPDLG----G-------NLSTMEMAEEVAK 328 (330)
T ss_pred CCC-cCcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCCCcccC----C-------CcCHHHHHHHHHH
Confidence 999 999999999999999987 58899999999999999999999998 7 7999999999998
Q ss_pred HH
Q 015139 403 DL 404 (412)
Q Consensus 403 ~l 404 (412)
+|
T Consensus 329 ~~ 330 (330)
T PRK14025 329 RV 330 (330)
T ss_pred hC
Confidence 74
No 13
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=6.3e-102 Score=796.99 Aligned_cols=338 Identities=23% Similarity=0.236 Sum_probs=306.1
Q ss_pred ecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcC-CCCCHHHHHHHHcCCeeEecccCCCCchhHH
Q 015139 8 VANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATD-DKVTVESAEATLKYNVAIKCATITPDEARVK 86 (412)
Q Consensus 8 m~~~I~vi~GDGiGpEv~~~~~~vl~~~~~~i~~~~~~~G~~~~~~~g-~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~ 86 (412)
++++|+||||||||||||+++++||.+++++|+|+++++|+++++++| +++|++++++|+++|++||||+++|...
T Consensus 3 ~~~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~~--- 79 (482)
T PRK09222 3 EKTPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQGG--- 79 (482)
T ss_pred CcceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCcc---
Confidence 358999999999999999999999988899999999999999999987 7999999999999999999999999642
Q ss_pred HHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCcccc
Q 015139 87 EFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKTE 166 (412)
Q Consensus 87 e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~~~ 166 (412)
+++|+|++|||+||||+|+||+++ + .|+..+| +.++|+|||||||||+|+|.+++.
T Consensus 80 ------~~~s~~~~LRk~ldLYaNvRP~r~--~---~pgv~~~-----------~~~iD~vIVRENtEG~Y~G~e~~~-- 135 (482)
T PRK09222 80 ------GYKSLNVTLRKTLGLYANVRPCVS--Y---HPFVETK-----------HPNLDVVIIRENEEDLYAGIEHRQ-- 135 (482)
T ss_pred ------CccchHHHHHHHcCCeEEeeeEEe--c---CCCCCCC-----------CCCcCEEEEEeccCCeeccceeec--
Confidence 578899999999999999999864 3 1232222 469999999999999999986431
Q ss_pred eeeccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCe
Q 015139 167 LEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGI 244 (412)
Q Consensus 167 ~~~~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I 244 (412)
.++++++ ++|||+++|||+|+||+||++|++ |||++||+|||+.|||||+++|+|| +++|| +|
T Consensus 136 --------~~~~~~~~k~iTr~~~eRI~r~AFe~A~~r~rkkVt~v~KaNVmk~tdglf~~v~~ev-a~eyP------dI 200 (482)
T PRK09222 136 --------TPDVYQCLKLISRPGSEKIIRYAFEYARANGRKKVTCLTKDNIMKLTDGLFHKVFDEI-AKEYP------DI 200 (482)
T ss_pred --------CCCeeeEeeccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccccchHHHHHHHHH-HhhCC------Cc
Confidence 1467889 999999999999999999999964 6999999999999999999999999 68999 99
Q ss_pred EEceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccCC
Q 015139 245 WYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGG 323 (412)
Q Consensus 245 ~~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk 323 (412)
+++|++||++||+||++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+||||| |||||
T Consensus 201 ~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~GslGlapSanig~~--~amFEpvHGSAP-----dIAGk 273 (482)
T PRK09222 201 EAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAEISGSVGLAGSANIGEE--YAMFEAVHGSAP-----DIAGK 273 (482)
T ss_pred eEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHHhcCCcccccceecCCC--ceeeECCCCCch-----hhcCC
Confidence 999999999999999999999 9999999999999999999999999999999987 499999999999 99999
Q ss_pred CcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCcccccCHHHHHHHHHHH
Q 015139 324 ETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADD 403 (412)
Q Consensus 324 ~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~ 403 (412)
|+ |||+|+|||++|||+||| +.++|++|++||.+|+++|++|+||+ |... +...++|+||+|+|+++
T Consensus 274 ~i-ANP~a~IlSaamML~hlG-------~~~~A~~I~~Av~~tl~~G~~T~Dl~----g~~~-~~~~~~T~e~~~aVi~~ 340 (482)
T PRK09222 274 NI-ANPSGLLNAAVMMLVHIG-------QFDIAELIENAWLKTLEDGIHTADIY----NEGV-SKKKVGTKEFAEAVIEN 340 (482)
T ss_pred Cc-cCcHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHHcCCCCcccC----CCCC-CCCCcCHHHHHHHHHHH
Confidence 99 999999999999999987 58899999999999999999999996 3100 01258999999999999
Q ss_pred HHHH
Q 015139 404 LRAR 407 (412)
Q Consensus 404 l~~~ 407 (412)
|.++
T Consensus 341 l~~~ 344 (482)
T PRK09222 341 LGQK 344 (482)
T ss_pred HhcC
Confidence 9754
No 14
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-101 Score=772.01 Aligned_cols=333 Identities=19% Similarity=0.153 Sum_probs=297.8
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC---CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchhHH
Q 015139 10 NPIVEMDGDEMTRVFWKSIKDKLIFP---FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVK 86 (412)
Q Consensus 10 ~~I~vi~GDGiGpEv~~~~~~vl~~~---~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~ 86 (412)
++|+||||||||||||+++++||.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|....
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~~~-- 82 (344)
T PRK03437 5 MKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSVPS-- 82 (344)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCCCC--
Confidence 68999999999999999999998744 8999999999999999999999999999999999999999999994211
Q ss_pred HHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCcccc
Q 015139 87 EFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKTE 166 (412)
Q Consensus 87 e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~~~ 166 (412)
..+++|+++.|||+||||+|+||+++ +|++ .+|++ .+.++|++||||||||+|+|.++...
T Consensus 83 ----~~~~~~~~~~LRk~ldLyaNvRP~r~--~pg~----~sp~k--------~~~~iD~vivREnteG~Y~g~~~~~~- 143 (344)
T PRK03437 83 ----GVLERGLLLKLRFALDHYVNLRPSKL--YPGV----TSPLA--------GPGDIDFVVVREGTEGPYTGNGGALR- 143 (344)
T ss_pred ----CCcccchHHHHHHHcCCeEEEEEeec--CCCC----CCcCC--------CCCCCCEEEEEECCCccccCCccccc-
Confidence 11357789999999999999999864 3443 35553 14689999999999999999764310
Q ss_pred eeeccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCe
Q 015139 167 LEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGI 244 (412)
Q Consensus 167 ~~~~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~-~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I 244 (412)
... ..+++++ ++|||++++||+|+||+||++|+ ++||+|||+|||+.|+|||+++|+|| +++|| +|
T Consensus 144 ----~~~-~~~~a~~~~~~Tr~~~~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~ev-a~~yp------dV 211 (344)
T PRK03437 144 ----VGT-PHEVATEVSVNTAFGVERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEV-AAEYP------DV 211 (344)
T ss_pred ----CCC-cceeEEEEEEecHHHHHHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHH-HhhCC------Cc
Confidence 001 1467889 99999999999999999999995 56999999999999999999999999 68999 99
Q ss_pred EEceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCc-eEEEccccccccccccccccC
Q 015139 245 WYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKG 322 (412)
Q Consensus 245 ~~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~-~a~FEp~HGSAp~~~~~diaG 322 (412)
+++++|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++. ++||||+||||| ||||
T Consensus 212 ~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pSanig~~g~~~a~FEp~HGSAP-----diAG 286 (344)
T PRK03437 212 TVDYQHVDAATIFMVTDPSRFDVIVTDNLFGDIITDLAAAVTGGIGLAASGNINPTGTNPSMFEPVHGSAP-----DIAG 286 (344)
T ss_pred eEeehhHHHHHHHHhcCcccCcEEEEcccchhhhhHHHHHhcCCccccceeeecCCCCcceeEecCCCCch-----hhcC
Confidence 999999999999999999999 999999999999999999999999999999997642 489999999999 9999
Q ss_pred CCcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCcccccCHHHHHHHHHH
Q 015139 323 GETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVAD 402 (412)
Q Consensus 323 k~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~ 402 (412)
||+ |||+|||||++|||+||| +.++|++|++||++++++| +| | .+||+||+|+|++
T Consensus 287 k~i-ANP~a~IlS~amML~~lg-------~~~~a~~I~~Av~~~l~~g-----~g----g-------~~~T~e~~~ai~~ 342 (344)
T PRK03437 287 QGI-ADPTAAILSVALLLDHLG-------EEDAAARIEAAVEADLAER-----GK----M-------GRSTAEVGDRIAA 342 (344)
T ss_pred CCc-cChHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHhc-----CC----C-------CcCHHHHHHHHHh
Confidence 999 999999999999999977 6899999999999999998 45 6 7899999999998
Q ss_pred HH
Q 015139 403 DL 404 (412)
Q Consensus 403 ~l 404 (412)
+|
T Consensus 343 ~l 344 (344)
T PRK03437 343 RL 344 (344)
T ss_pred hC
Confidence 75
No 15
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-101 Score=772.89 Aligned_cols=346 Identities=20% Similarity=0.199 Sum_probs=305.3
Q ss_pred ecccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCch
Q 015139 8 VANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEA 83 (412)
Q Consensus 8 m~~~I~vi~GDGiGpEv~~~~~~vl~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~ 83 (412)
|.++|++|||||||||||+++++||.+. +++|+|+++++|+++++++|++||++++++|+++|++||||+++|...
T Consensus 1 ~~~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~ 80 (358)
T PRK00772 1 MTYKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWD 80 (358)
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCC
Confidence 3478999999999999999999998643 789999999999999999999999999999999999999999999532
Q ss_pred hHHHHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCc
Q 015139 84 RVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDE 163 (412)
Q Consensus 84 ~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~ 163 (412)
..+ ....+.+| |++|||+||||+|+||+++ +|++.. .+|++ ...+.++|+|||||||||+|+|.++.
T Consensus 81 ~~~--~~~~~~~~-~~~LR~~ldlyanvRP~r~--~pg~~~--~~plk------~~~~~~iD~vivREntEG~Y~g~~~~ 147 (358)
T PRK00772 81 NLP--PDVRPERG-LLALRKELGLFANLRPAKL--YPGLAD--ASPLK------PEIVAGLDILIVRELTGGIYFGEPRG 147 (358)
T ss_pred CCC--ccCCChhh-HHHHHHHcCCeEEEeEeec--CCCCCC--cCCCc------ccccCCccEEEEecccCCeecCCccc
Confidence 100 00113456 8999999999999999864 344321 13553 12356899999999999999997642
Q ss_pred ccceeeccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccC
Q 015139 164 KTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAA 242 (412)
Q Consensus 164 ~~~~~~~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~ 242 (412)
. ....+ .+++++ ++|||++++||+|+||+||++|+++||++||+|||+ ++|+|+++|+|| +++||
T Consensus 148 ~-----~~~~~-~~~a~~~~~iTr~~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl~-~~glf~~~~~ev-a~eyp------ 213 (358)
T PRK00772 148 R-----EGLGG-EERAFDTMVYTREEIERIARVAFELARKRRKKVTSVDKANVLE-SSRLWREVVTEV-AKEYP------ 213 (358)
T ss_pred c-----cCCCC-ceeEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECccccc-cchHHHHHHHHH-HhHCC------
Confidence 1 00012 457889 999999999999999999999988999999999999 999999999999 58999
Q ss_pred CeEEceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEcccccccccccccccc
Q 015139 243 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 321 (412)
Q Consensus 243 ~I~~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~dia 321 (412)
+|++++++||+++|+||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ++||||+||||| |||
T Consensus 214 ~i~~~~~~vDa~~~~lv~~P~~fDViv~~NlfGDIlSDlaa~l~GglGl~psanig~~~-~a~FEp~HGSAp-----diA 287 (358)
T PRK00772 214 DVELSHMYVDNAAMQLVRNPKQFDVIVTENLFGDILSDEAAMLTGSLGMLPSASLGESG-PGLYEPIHGSAP-----DIA 287 (358)
T ss_pred CceEEEEeHHHHHHHHhhCcccCeEEeecCcccccccHHHHHhcCCCCCCcceEeCCCC-ceeeecCCCchh-----hhc
Confidence 99999999999999999999999 99999999999999999999999999999999876 599999999999 999
Q ss_pred CCCcccChhhHHHHHHHHHHh-hcccCCccchHHHHHHHHHHHHHHHHcCCCCccc---cccccCCCCCcccccCHHHHH
Q 015139 322 GGETSTNSIASIFAWSRGLAH-RAKLDNNARLLDFTEKLEAACIGTVESGKMTKDL---ALIIHGSKMTREHYLNTEEFI 397 (412)
Q Consensus 322 Gk~i~ANP~a~IlS~ammL~~-lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dl---g~~~~G~~~~~~~~~sT~e~~ 397 (412)
|||+ |||+|+|||++|||+| || +.++|++|++||.+++++|++|+|| | | +++|+||+
T Consensus 288 Gk~~-aNP~a~Ils~ammL~~~lg-------~~~~a~~i~~Av~~~l~~g~~T~Dl~~~g----g-------~~~T~e~~ 348 (358)
T PRK00772 288 GKGI-ANPIATILSAAMMLRYSLG-------LEEAADAIEAAVEKVLAQGYRTADIAEGG----G-------KVSTSEMG 348 (358)
T ss_pred CCCC-cCCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHcCCcCcccccCC----C-------CcCHHHHH
Confidence 9999 9999999999999999 87 6899999999999999999999999 5 6 79999999
Q ss_pred HHHHHHHH
Q 015139 398 DAVADDLR 405 (412)
Q Consensus 398 daV~~~l~ 405 (412)
|+|+++|+
T Consensus 349 ~av~~~l~ 356 (358)
T PRK00772 349 DAILAALA 356 (358)
T ss_pred HHHHHHhh
Confidence 99999985
No 16
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=3e-101 Score=769.46 Aligned_cols=321 Identities=22% Similarity=0.221 Sum_probs=295.3
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchhHHHHH
Q 015139 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (412)
Q Consensus 10 ~~I~vi~GDGiGpEv~~~~~~vl~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~ 89 (412)
++|++|||||||||||++++++|.+.+++|+|+++++|++ |.++|++++++++++|++||||+++|.+.
T Consensus 31 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G~~-----~~~lp~~~l~~~~~~da~L~Gavg~p~~~------ 99 (360)
T PLN00123 31 RAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGD-----MKKVPEEVLESIRRNKVCLKGGLATPVGG------ 99 (360)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccCCC-----CccCCHHHHHHHHHCCEEEEccccCCCCc------
Confidence 6899999999999999999999988899999999999986 68999999999999999999999999532
Q ss_pred hhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCcccceee
Q 015139 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKTELEV 169 (412)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~~~~~~ 169 (412)
+.+|+++.|||+||||+|+||+++ +|++ .+| +.++|+|||||||||+|+|.++..
T Consensus 100 ---~~~s~~l~LR~~ldLyaNvRP~k~--~pg~----~~~-----------~~~iD~viVREnteG~Y~g~~~~~----- 154 (360)
T PLN00123 100 ---GVSSLNVQLRKELDLFASLVNCFN--LPGL----PTR-----------HENVDIVVIRENTEGEYSGLEHEV----- 154 (360)
T ss_pred ---CccchHHHHHHHcCCEEEEEEeec--CCCC----CCc-----------cCCCCEEEEEeCCCceeccceeec-----
Confidence 356889999999999999999864 3443 222 469999999999999999976421
Q ss_pred ccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCeEEc
Q 015139 170 YNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE 247 (412)
Q Consensus 170 ~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~-~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~~~ 247 (412)
.++++++ ++|||+++|||+|+||+||++|+ +|||++||+|||+.|+|||+++|+|| +++|| +|+++
T Consensus 155 -----~~g~~~~~~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~ev-a~eyP------dV~~~ 222 (360)
T PLN00123 155 -----VPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREV-AKKYP------GIKYN 222 (360)
T ss_pred -----CCCceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHH-HhhCC------CceEe
Confidence 1467888 99999999999999999999985 46999999999999999999999999 68999 99999
Q ss_pred eeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEcccc--ccc--cccccccccC
Q 015139 248 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH--GTV--TRHYRVHQKG 322 (412)
Q Consensus 248 ~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~H--GSA--p~~~~~diaG 322 (412)
|+|||++|||||++|++| ||||+|||||||||+||+|+||+||+||+|+|++ ++||||+| ||| | ||||
T Consensus 223 ~~~VDa~~~~Lv~~P~~fDViVt~NlfGDILSDlaa~l~GglGl~pSanig~~--~a~FEpvh~hGSA~~P-----dIAG 295 (360)
T PLN00123 223 EIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAD--HAVFEQGASAGNVGNE-----KLVE 295 (360)
T ss_pred eeeHHHHHHHHhhCcccCcEEEEcCcccchhhhHHHHhcCCcCccceEeeCCC--ceEEEecccCCCcCCc-----cccC
Confidence 999999999999999999 9999999999999999999999999999999988 49999976 999 9 9999
Q ss_pred CCcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcC-CCCccccccccCCCCCcccccCHHHHHHHHH
Q 015139 323 GETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVA 401 (412)
Q Consensus 323 k~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~ 401 (412)
||+ |||+|||||++|||+||| +.++|++|++||.+++++| ++|+||| | ++||+||+|+|+
T Consensus 296 k~i-ANP~a~IlS~amML~~lG-------~~~~A~~I~~AV~~~l~~G~~~T~DlG----G-------~~sT~e~~~ai~ 356 (360)
T PLN00123 296 QKK-ANPVALLLSSAMMLRHLQ-------FPSFADRLETAVKRVIAEGKYRTKDLG----G-------SSTTQEVVDAVI 356 (360)
T ss_pred CCc-cChHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHHHHH
Confidence 999 999999999999999977 6899999999999999999 8999998 7 799999999999
Q ss_pred HHH
Q 015139 402 DDL 404 (412)
Q Consensus 402 ~~l 404 (412)
++|
T Consensus 357 ~~l 359 (360)
T PLN00123 357 ANL 359 (360)
T ss_pred Hhh
Confidence 987
No 17
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=2.4e-101 Score=783.52 Aligned_cols=350 Identities=20% Similarity=0.223 Sum_probs=304.7
Q ss_pred EEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchh
Q 015139 12 IVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (412)
Q Consensus 12 I~vi~GDGiGpEv~~~~~~vl~~~-------~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~ 84 (412)
|++|||||||||||+++++||.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|...
T Consensus 26 I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP~~~- 104 (412)
T PRK06451 26 ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETPIGK- 104 (412)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCc-
Confidence 999999999999999999998632 269999999999999999999999999999999999999999999532
Q ss_pred HHHHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCcc
Q 015139 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEK 164 (412)
Q Consensus 85 ~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~ 164 (412)
.|+|+|+.|||+||||+|+||+++ +|++ .+|++ + ..++|+||+||||||+|+|.+...
T Consensus 105 --------~~~s~~l~LRk~ldLyaNvRPvk~--~pgl----~sp~~---~-----~~~iD~vIvREnTeG~Y~g~~~~~ 162 (412)
T PRK06451 105 --------GWKSINVAIRLMLDLYANIRPVKY--IPGI----ESPLK---N-----PEKIDLIIFRENTDDLYRGIEYPY 162 (412)
T ss_pred --------CCcChhHHHHHHcCCeEeeceeec--CCCC----CCccc---C-----cCCccEEEEEeccCCeeecccccc
Confidence 588999999999999999999854 3443 35543 1 358999999999999999986320
Q ss_pred c---ceeeccc-----c-C-CCceEEE-eeeCHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccccHHHHHHHHHHHH
Q 015139 165 T---ELEVYNF-----T-G-EGGVALS-MYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYE 232 (412)
Q Consensus 165 ~---~~~~~~~-----~-~-~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~-~~Vt~v~KaNvl~~tdglf~~~~~ev~a 232 (412)
. +....++ . + ..+++++ ++||+++++||+|+||+||++|+ +|||+|||+|||+.|+|+|+++|+||++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~ 242 (412)
T PRK06451 163 DSEEAKKIRDFLRKELGVEVEDDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVAL 242 (412)
T ss_pred ccccccccccccccccccccccceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHH
Confidence 0 0000000 0 0 1346788 99999999999999999999996 4799999999999999999999999954
Q ss_pred hhcCC--------------ccccCCeEEceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeC
Q 015139 233 ANWKS--------------KFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVC 297 (412)
Q Consensus 233 ~~yp~--------------~~~~~~I~~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig 297 (412)
++||| +|..++|+++|+|||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|
T Consensus 243 ~eypd~~~~~~~~~~~y~~~~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSanig 322 (412)
T PRK06451 243 KEFRDYVVTEEEVTKNYNGVPPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGANIG 322 (412)
T ss_pred HhCCcccccccchhhccccccccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeC
Confidence 58985 6777789999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCceEEEccccccccccccccccCCCcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCcccc
Q 015139 298 PDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLA 377 (412)
Q Consensus 298 ~~~~~a~FEp~HGSAp~~~~~diaGk~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg 377 (412)
+++ +||||+||||| ||||||+ |||+|||||++|||+||| +.++|++|++||.+++++|++|+||+
T Consensus 323 ~~~--alFEpvHGSAP-----diAGk~i-ANP~a~IlS~amML~~lg-------~~~~A~~I~~Av~~vl~~G~~T~Dl~ 387 (412)
T PRK06451 323 DTG--GMFEAIHGTAP-----KYAGKNV-ANPTGIIKGGELMLRFMG-------WDKAADLIDKAIMESIKQKKVTQDLA 387 (412)
T ss_pred CCC--ceeECCCCCcc-----ccCCCCC-cCcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCcCcccc
Confidence 884 99999999999 9999999 999999999999999977 68999999999999999999999995
Q ss_pred ccccCCCCCcccccCHHHHHHHHHHHHH
Q 015139 378 LIIHGSKMTREHYLNTEEFIDAVADDLR 405 (412)
Q Consensus 378 ~~~~G~~~~~~~~~sT~e~~daV~~~l~ 405 (412)
...+| +.++|+||+|+|+++|+
T Consensus 388 ~~~gg------~~~~T~e~~daI~~~l~ 409 (412)
T PRK06451 388 RFMGV------RALSTTEYTDELISIID 409 (412)
T ss_pred ccCCC------CccCHHHHHHHHHHHHh
Confidence 10004 24899999999999993
No 18
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=3.1e-101 Score=771.10 Aligned_cols=342 Identities=21% Similarity=0.192 Sum_probs=300.3
Q ss_pred cEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchhHH
Q 015139 11 PIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVK 86 (412)
Q Consensus 11 ~I~vi~GDGiGpEv~~~~~~vl~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~ 86 (412)
+|++|||||||||||+++++||.+. +++|+|+++++|+++++++|++||++++++|+++|++||||+++|.....+
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~ 80 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP 80 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC
Confidence 5899999999999999999998643 789999999999999999999999999999999999999999998532100
Q ss_pred HHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCcccc
Q 015139 87 EFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKTE 166 (412)
Q Consensus 87 e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~~~ 166 (412)
.-..++.+ +++|||+||||+|+||++. +|++... +|++ + ..+.++|+|||||||||+|+|.++...
T Consensus 81 --~~~~~~~~-~~~LR~~ldlyanvRP~r~--~~g~~~~--~p~~--~----~~~~~iD~vivREntEG~Y~g~~~~~~- 146 (349)
T TIGR00169 81 --RDQRPEQG-LLKLRKSLDLFANLRPAKV--FPSLEDL--SPLK--E----EIAKGVDFVVVRELTGGIYFGEPKGRF- 146 (349)
T ss_pred --ccccchhh-HHHHHHHcCCeEEEEEeec--cCCCCcc--CCCc--c----cccCCceEEEEeeccCCeecCCCcccc-
Confidence 00011334 8999999999999999865 3443221 3443 1 135799999999999999999764210
Q ss_pred eeeccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCeE
Q 015139 167 LEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIW 245 (412)
Q Consensus 167 ~~~~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~ 245 (412)
. .+..+++++ ++|||+++|||+|+||+||++|+++||+|||+|||+ ++|+|+++|+|| +++|| +|+
T Consensus 147 --~---~~~~~~a~~~~~~Tr~~~eRI~r~AF~~A~~r~~~Vt~v~KaNvlk-t~glf~~~~~ev-a~~yP------~I~ 213 (349)
T TIGR00169 147 --G---AGGEGEAWDTEVYTKPEIERIARVAFEMARKRRKKVTSVDKANVLE-SSRLWRKTVEEI-AKEYP------DVE 213 (349)
T ss_pred --C---CCCcceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECCcccc-hhHHHHHHHHHH-HhhCC------Cce
Confidence 0 111467889 999999999999999999999988999999999999 999999999999 68999 999
Q ss_pred EceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccCCC
Q 015139 246 YEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGE 324 (412)
Q Consensus 246 ~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk~ 324 (412)
+++++||+++||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ++||||+||||| ||||||
T Consensus 214 ~~~~~vDa~~~~Lv~~P~~fDViv~~NlfGDILSDlaa~l~GglGlapSanig~~~-~a~FEp~HGSAP-----diAGk~ 287 (349)
T TIGR00169 214 LEHQYIDNAAMQLVKSPTQFDVVVTGNIFGDILSDEASVIPGSLGMLPSASLGSDG-FGLFEPVHGSAP-----DIAGKG 287 (349)
T ss_pred EEeeeHHHHHHHHHhCccCceEEEEcCcccchhhHHHHHhcCCCCCCceEEECCCC-CEEEECCCCChh-----HhcCCC
Confidence 99999999999999999999 99999999999999999999999999999999765 599999999999 999999
Q ss_pred cccChhhHHHHHHHHHHh-hcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCcccccCHHHHHHHHHHH
Q 015139 325 TSTNSIASIFAWSRGLAH-RAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADD 403 (412)
Q Consensus 325 i~ANP~a~IlS~ammL~~-lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~ 403 (412)
+ |||+|||||++|||+| +| +.++|++|++||++++++|++|+||| | .++|++|+++|++.
T Consensus 288 i-ANP~a~IlS~amML~~~lg-------~~~~a~~i~~Av~~~l~~g~~T~Dlg----G-------~~~t~e~t~av~~~ 348 (349)
T TIGR00169 288 I-ANPIAQILSAAMMLRYSFN-------LEEAADAIEAAVKKVLAEGYRTPDLG----S-------SATTEVGTAEMGEE 348 (349)
T ss_pred C-CChHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHcCCCccccC----C-------CcchHHHHHHHHhc
Confidence 9 9999999999999999 57 68999999999999999999999998 7 68999999999976
Q ss_pred H
Q 015139 404 L 404 (412)
Q Consensus 404 l 404 (412)
|
T Consensus 349 ~ 349 (349)
T TIGR00169 349 L 349 (349)
T ss_pred C
Confidence 4
No 19
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=1.9e-101 Score=790.80 Aligned_cols=334 Identities=23% Similarity=0.216 Sum_probs=302.3
Q ss_pred cEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcC-CCCCHHHHHHHHcCCeeEecccCCCCchhHHHHH
Q 015139 11 PIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATD-DKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (412)
Q Consensus 11 ~I~vi~GDGiGpEv~~~~~~vl~~~~~~i~~~~~~~G~~~~~~~g-~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~ 89 (412)
+|+||||||||||||+++++||.+++++|+|+++++|+++++++| +++|++++|+|+++|++||||+++|.+.
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~~------ 75 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQGG------ 75 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCcc------
Confidence 699999999999999999999988899999999999999999995 8999999999999999999999999643
Q ss_pred hhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCcccceee
Q 015139 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKTELEV 169 (412)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~~~~~~ 169 (412)
+.+|+|++|||+||||+|+||+++ ++ |+... .+.++|+|||||||||+|+|.++..
T Consensus 76 ---~~~s~~~~LRk~ldLYANvRPv~~--~~---p~~~~-----------~~~~vDiVIVRENtEGlY~G~e~~~----- 131 (473)
T TIGR02924 76 ---GHKSLNVTLRKTLGLYANIRPCVS--YH---PFIET-----------KSPNLNIVIVRENEEDLYTGIEYRQ----- 131 (473)
T ss_pred ---CcccHHHHHHHHcCCeEEEEEeec--cC---CCCCC-----------ccCCcCEEEEEeccCceecCceeec-----
Confidence 467889999999999999999864 32 22111 2469999999999999999986421
Q ss_pred ccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCeEEc
Q 015139 170 YNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE 247 (412)
Q Consensus 170 ~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~-~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~~~ 247 (412)
.++++++ ++|||+++|||+|+||+||++|+ +|||++||+|||+.|||||+++|+|| +++|| +|+++
T Consensus 132 -----~~~~~~~~kviTr~g~eRI~r~AFe~A~~r~rkkVT~v~KaNVmk~tdglf~e~~~ev-a~eyP------dI~~e 199 (473)
T TIGR02924 132 -----TPDTYECTKLITRSGSEKICRYAFEYARKHNRKKVTCLTKDNIMKMTDGIFHKIFDKI-AAEYP------DIESE 199 (473)
T ss_pred -----cCChheEeEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccchhHHHHHHHH-HhhCC------CcEEe
Confidence 1456778 99999999999999999999996 46999999999999999999999999 68999 99999
Q ss_pred eeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccCCCcc
Q 015139 248 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETS 326 (412)
Q Consensus 248 ~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk~i~ 326 (412)
|++||++||+|+++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+||||| ||||||+
T Consensus 200 ~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSaNiG~~--~amFEpvHGSAP-----dIAGk~i- 271 (473)
T TIGR02924 200 HYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEISGSVGLAGSANIGEE--YAMFEAVHGSAP-----DIAGQNI- 271 (473)
T ss_pred eHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhcCCcCcccceecCCC--cceeecCCCchh-----hhCCCCc-
Confidence 999999999999999999 9999999999999999999999999999999988 499999999999 9999999
Q ss_pred cChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCcccccCHHHHHHHHHHHHHH
Q 015139 327 TNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRA 406 (412)
Q Consensus 327 ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~l~~ 406 (412)
|||+|||||++|||+||| +.++|++|++||.+|+++|++|+||+.. | .+..+++|+||+|+|+++|.+
T Consensus 272 ANP~a~IlSaamML~hLG-------~~~~A~~I~~AV~~vl~~G~~T~Dl~~~--~---~~gg~~sT~e~~daVi~~l~~ 339 (473)
T TIGR02924 272 ANPSGLLNAAIQMLVHIG-------QSDIAQLIYNAWLKTLEDGVHTADIYNE--K---TSKQKVGTKEFAEAVTANLGK 339 (473)
T ss_pred cChHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCcCcccccc--c---cCCCCcCHHHHHHHHHHHhcc
Confidence 999999999999999987 5889999999999999999999999621 1 000268999999999999965
No 20
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=2.4e-100 Score=761.65 Aligned_cols=325 Identities=21% Similarity=0.222 Sum_probs=297.4
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchhHHHHH
Q 015139 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (412)
Q Consensus 10 ~~I~vi~GDGiGpEv~~~~~~vl~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~ 89 (412)
++|+||||||||||||+++++||.+.+++|+|+++++|++ +.+|+++|++++++++++|++||||+++|...+
T Consensus 4 ~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~--~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~~----- 76 (333)
T TIGR00175 4 YTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQ--TDGKTEIPDEAVESIKRNKVALKGPLETPIGKG----- 76 (333)
T ss_pred EEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChh--hccCCcCCHHHHHHHHHCCEEEEcccCCccccc-----
Confidence 5899999999999999999999988899999999999997 678999999999999999999999999985321
Q ss_pred hhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCcccceee
Q 015139 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKTELEV 169 (412)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~~~~~~ 169 (412)
.++|++++|||+||||+|+||+++ +|++. +| +.++|++|+||||||+|+|.+.. .
T Consensus 77 ---~~~s~~~~lR~~ldlyanvRP~k~--~pg~~----~~-----------~~~iD~vivREnteG~Y~g~~~~-----~ 131 (333)
T TIGR00175 77 ---GHRSLNVALRKELDLYANVVHCKS--LPGFK----TR-----------HEDVDIVIIRENTEGEYSGLEHE-----S 131 (333)
T ss_pred ---cccchhHHHHHHcCCEEEeEEecC--CCCCC----CC-----------CCCcCEEEEEEeCCCcccceeEe-----c
Confidence 378899999999999999999854 34432 22 46899999999999999997532 1
Q ss_pred ccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCeEEc
Q 015139 170 YNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE 247 (412)
Q Consensus 170 ~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~~~ 247 (412)
.++++++ ++|||+++|||+|+||+||++|++ |||++||+|||+.|||+|+++|+|| +++|| +|+++
T Consensus 132 -----~~~~~~~~~~~Tr~~~eRi~r~Af~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~ev-a~~yp------~v~~~ 199 (333)
T TIGR00175 132 -----VPGVVESLKVITRDKSERIARYAFEYARKNGRKKVTAVHKANIMKLADGLFLNVCREV-AKEYP------DITFE 199 (333)
T ss_pred -----cCCeEEEEEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhHHHHHHHHHHH-HHHCC------CCeee
Confidence 1467888 999999999999999999999975 5999999999999999999999999 58899 99999
Q ss_pred eeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccc-cccccccccccccCCCc
Q 015139 248 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAA-HGTVTRHYRVHQKGGET 325 (412)
Q Consensus 248 ~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~-HGSAp~~~~~diaGk~i 325 (412)
|+|||+++|+||++|++| ||||+|||||||||++|+++||+||+||+|+|++. +||||+ ||||| ||||||+
T Consensus 200 ~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~GslGl~pSanig~~~--a~fEp~~hGSAp-----diaGk~i 272 (333)
T TIGR00175 200 SMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLVGGPGLVPGANIGRDY--AVFEPGVRHTGP-----DIAGQNI 272 (333)
T ss_pred eeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHHhcCCcccCceeEEcCCC--ceEeccCCCCch-----hhCCCCc
Confidence 999999999999999999 99999999999999999999999999999999874 999995 59999 9999999
Q ss_pred ccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcC-CCCccccccccCCCCCcccccCHHHHHHHHHHHH
Q 015139 326 STNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 404 (412)
Q Consensus 326 ~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~l 404 (412)
|||+|+|||++|||+||| ++++|++|++||.+++++| .+|+||| | ++||+||+|+|+++|
T Consensus 273 -aNP~a~Ils~ammL~~lG-------~~~~a~~i~~Av~~~l~~G~~~T~DlG----G-------~~~T~e~~~ai~~~l 333 (333)
T TIGR00175 273 -ANPTALILSSVMMLNHLG-------LKEHADRIQKAVLSTIAEGKNRTKDLG----G-------TATTSDFTEAVIKRL 333 (333)
T ss_pred -cChHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCccChhcC----C-------CcCHHHHHHHHHhhC
Confidence 999999999999999977 6899999999999999999 8999998 7 799999999999875
No 21
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=2.9e-100 Score=776.51 Aligned_cols=349 Identities=21% Similarity=0.215 Sum_probs=301.0
Q ss_pred EEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhhcCC--CCCHHHHHHHHcCCeeEecccCCCCc
Q 015139 12 IVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 82 (412)
Q Consensus 12 I~vi~GDGiGpEv~~~~~~vl~~~-------~~~i~~~~~~~G~~~~~~~g~--~lp~~~~dai~~~~v~lkg~~~~p~~ 82 (412)
|++|||||||||||+++++||.+. +++|+|+++++|+++++++|+ ++|++++++|++++++||||+++|..
T Consensus 22 I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~tp~~ 101 (409)
T PRK07006 22 IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLTTPVG 101 (409)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999998632 259999999999999999999 99999999999999999999999953
Q ss_pred hhHHHHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCC
Q 015139 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKD 162 (412)
Q Consensus 83 ~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~ 162 (412)
. +++|+|+.|||+||||+|+||+++ +|++ .+|++ ...++|+||+||||||+|+|.+.
T Consensus 102 ~---------~~~s~~l~LR~~ldLyaNvRPvk~--~pgl----~~plk--------~~~~iD~vIvREnteG~Y~g~~~ 158 (409)
T PRK07006 102 G---------GIRSLNVALRQELDLYVCLRPVRY--FKGV----PSPVK--------RPEDTDMVIFRENSEDIYAGIEW 158 (409)
T ss_pred c---------CccChHHHHHHHcCCEEEEEEEec--CCCC----CCCCC--------CCCCCCEEEEEeccCCeeccccc
Confidence 2 467889999999999999999864 3443 34543 13589999999999999998763
Q ss_pred cccc---eeecccc----C------CCceEEE-eeeCHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccccHHHHHHH
Q 015139 163 EKTE---LEVYNFT----G------EGGVALS-MYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIF 227 (412)
Q Consensus 163 ~~~~---~~~~~~~----~------~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~-~~Vt~v~KaNvl~~tdglf~~~~ 227 (412)
.... ..+..+. + ..+.+++ ++|||+++|||+|+||+||++|+ ++||+|||+|||+.|||||++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~ 238 (409)
T PRK07006 159 KAGSAEAKKVIKFLQEEMGVKKIRFPETSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWG 238 (409)
T ss_pred ccCCcccceeeeccccccCcccccccccceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHH
Confidence 1100 0000000 0 1356788 99999999999999999999996 47999999999999999999988
Q ss_pred HHHHHhhcCCcccc-------------CCeEEceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccc
Q 015139 228 QEVYEANWKSKFEA-------------AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTS 293 (412)
Q Consensus 228 ~ev~a~~yp~~~~~-------------~~I~~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapS 293 (412)
.||++++||++|.. ++|+++++|||++|||||++|++| ||||+|||||||||++|+++|||||+||
T Consensus 239 ~eva~~ey~~~~~~~~~~~~~~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapS 318 (409)
T PRK07006 239 YQLAEEEFGDELIDGGPWDKIKNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPG 318 (409)
T ss_pred HHHHHHHhhhhhhccccccccccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhccc
Confidence 89964489655554 599999999999999999999999 9999999999999999999999999999
Q ss_pred eeeCCCCceEEEccccccccccccccccCCCcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCC
Q 015139 294 VLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMT 373 (412)
Q Consensus 294 anig~~~~~a~FEp~HGSAp~~~~~diaGk~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T 373 (412)
+|+|++ ++||||+||||| ||||||+ |||+|+|||++|||+||| +.++|++|++||.+++++|++|
T Consensus 319 anig~~--~a~FEpvHGSAP-----diAGk~i-ANP~a~IlS~amML~~lG-------~~~~A~~Ie~Av~~~l~~G~~T 383 (409)
T PRK07006 319 ANINDG--HAIFEATHGTAP-----KYAGLDK-VNPGSVILSAEMMLRHMG-------WTEAADLIIKSMEKTIASKTVT 383 (409)
T ss_pred ceeCCC--ceEEECCCCcch-----hhCCCCC-cChHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHhcCCcc
Confidence 999976 599999999999 9999999 999999999999999987 5889999999999999999999
Q ss_pred cccccccc-CCCCCcccccCHHHHHHHHHHHH
Q 015139 374 KDLALIIH-GSKMTREHYLNTEEFIDAVADDL 404 (412)
Q Consensus 374 ~Dlg~~~~-G~~~~~~~~~sT~e~~daV~~~l 404 (412)
+|||.... | +.++|+||+|+|+++|
T Consensus 384 ~Dl~~~~~gg------~~~~T~e~~daI~~~l 409 (409)
T PRK07006 384 YDFARLMEGA------TEVKCSEFGDALIKNM 409 (409)
T ss_pred ccccccCCCC------cccCHHHHHHHHHhhC
Confidence 99941000 4 2489999999999875
No 22
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=6.4e-99 Score=747.23 Aligned_cols=319 Identities=23% Similarity=0.211 Sum_probs=296.2
Q ss_pred EEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchhHHHHHhh
Q 015139 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLK 91 (412)
Q Consensus 12 I~vi~GDGiGpEv~~~~~~vl~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~ 91 (412)
|++|||||||||||+++++||.+.+++|+|+++++|++++++||+++|++++++|+++|++||||+++|.+.
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~~-------- 72 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPANP-------- 72 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCCC--------
Confidence 689999999999999999999877999999999999999999999999999999999999999999999643
Q ss_pred hcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccC-CccEEEecCCccceeeccCCcccceeec
Q 015139 92 QMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYR-ATDTVIQGPGKLKLVFEGKDEKTELEVY 170 (412)
Q Consensus 92 ~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~-~id~vivrenteg~y~g~~~~~~~~~~~ 170 (412)
+++|+|++|||+||||+|+||+++ +|++. +| +. ++|++++||||||+|+|.+..
T Consensus 73 -~~~s~~~~LR~~ldlyanvRP~r~--~~g~~----~~-----------~~~~iD~vivREnteG~Y~g~~~~------- 127 (322)
T TIGR02088 73 -GYKSVIVTLRKELDLYANVRPAKS--LPGIP----DL-----------YPNGKDIVIVRENTEGLYAGFEFG------- 127 (322)
T ss_pred -CccChHHHHHHHcCCEEEEEEeec--cCCCC----CC-----------CCCCCCEEEEEeCcCCeeeccccc-------
Confidence 467889999999999999999864 34332 22 22 899999999999999997532
Q ss_pred cccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCeEEcee
Q 015139 171 NFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR 249 (412)
Q Consensus 171 ~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~~~~~ 249 (412)
. .+++++ ++|||+++|||+|+||+||++|++|||++||+|||+.|+|||+++|+|| +++|| |+++|+
T Consensus 128 ---~-~~~a~~~~~~tr~~~eRi~r~AF~~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~ev-a~~yp-------v~~~~~ 195 (322)
T TIGR02088 128 ---F-SDRAIAIRVITREGSERIARFAFNLAKERNRKVTCVHKANVLKGTDGLFREVCREI-AKRYG-------VEYRDM 195 (322)
T ss_pred ---c-CcceEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEeCCcchhhhHHHHHHHHHHH-HHhCC-------eeeeee
Confidence 1 357888 9999999999999999999999889999999999999999999999999 68998 999999
Q ss_pred eHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccCCCcccC
Q 015139 250 LIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTN 328 (412)
Q Consensus 250 ~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk~i~AN 328 (412)
+||++||+||++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||.||||| ||||||+ ||
T Consensus 196 ~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~fep~hGsa~-----diaG~~~-aN 267 (322)
T TIGR02088 196 YVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLGLAPSANIGDR--KALFEPVHGSAP-----DIAGKGI-AN 267 (322)
T ss_pred eHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCCCCceeEEcCC--ceEEecCCCChh-----HhCCCCC-CC
Confidence 9999999999999999 9999999999999999999999999999999987 499999999999 9999999 99
Q ss_pred hhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCcccccCHHHHHHHHH
Q 015139 329 SIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVA 401 (412)
Q Consensus 329 P~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~ 401 (412)
|+|||+|++|||+|+| +.++|++|++||.+++++|++|+||| | .+||+||+|+|+
T Consensus 268 p~a~i~A~~~~l~~~g-------~~~~a~~i~~Av~~~l~~g~~T~Dlg----G-------~~~T~e~~~av~ 322 (322)
T TIGR02088 268 PTAAILSVAMMLDYLG-------ELEKGKLVWEAVEYYIIEGKKTPDLG----G-------TAKTKEVGDEIA 322 (322)
T ss_pred hHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCCCcccC----C-------CcCHHHHHHHhC
Confidence 9999999999999977 58899999999999999999999998 7 799999999985
No 23
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-100 Score=733.62 Aligned_cols=326 Identities=25% Similarity=0.298 Sum_probs=302.6
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchhHHHHH
Q 015139 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (412)
Q Consensus 10 ~~I~vi~GDGiGpEv~~~~~~vl~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~ 89 (412)
+++++||||||||||++++++++.++.++|+|+.++.+...-..++..+|+++++++++++++||||+.||.++
T Consensus 36 ~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tPi~k------ 109 (365)
T KOG0785|consen 36 ITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATPIGK------ 109 (365)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCcccc------
Confidence 68999999999999999999999999999999999987754334778999999999999999999999999764
Q ss_pred hhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCcccceee
Q 015139 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKTELEV 169 (412)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~~~~~~ 169 (412)
+.+|+|++|||+|+||||+||+ +++ +|++. .|.++|+|++||||||+|+|.++. +
T Consensus 110 ---gh~S~nl~LRK~f~LyANVRPc--~Si----eG~Kt-----------~Y~~vD~V~IRENTEgeYsgiEh~-----v 164 (365)
T KOG0785|consen 110 ---GHRSLNLALRKEFGLYANVRPC--KSI----EGYKT-----------PYDDVDLVIIRENTEGEYSGIEHQ-----V 164 (365)
T ss_pred ---ccccHHHHHHHHhchhccceec--ccc----cCCcC-----------CCCCceEEEEecCCccccccceee-----c
Confidence 7889999999999999999997 333 44443 499999999999999999998864 2
Q ss_pred ccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCeEEc
Q 015139 170 YNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE 247 (412)
Q Consensus 170 ~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~~~ 247 (412)
.++|+.+ +.||+..++||++|||+||++++| +||++||+|||+.|||||+++|+|+ +++|| +|+++
T Consensus 165 -----vpGVvqsiK~IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~-a~~y~------dI~~e 232 (365)
T KOG0785|consen 165 -----VPGVVQSIKLITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREV-AKKYP------DIKFE 232 (365)
T ss_pred -----cccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHH-hhhCC------ccchh
Confidence 1578899 999999999999999999999975 6999999999999999999999999 79999 99999
Q ss_pred eeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccCCCcc
Q 015139 248 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETS 326 (412)
Q Consensus 248 ~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk~i~ 326 (412)
++|+|+||++|+++|..| |+|+||||||||||+||+|+||||++||+|+|+ + .++||++||||| ||||||+
T Consensus 233 E~~lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD~~agLvGgLGltPS~NiG~-g-~~~~e~vHGsAP-----DIAGkdl- 304 (365)
T KOG0785|consen 233 EQYLDTCCLKLVRNPSCFDVLVMPNLYGDILSDLCAGLVGGLGLTPSANIGD-G-IVIFEAVHGSAP-----DIAGKDL- 304 (365)
T ss_pred HHHHHHHHHHHhcCchhceEEeccchhHHHHHHHHHHhccCcccCCCcccCC-C-eeeeecccCCCc-----ccccCCc-
Confidence 999999999999999999 999999999999999999999999999999994 4 699999999999 9999999
Q ss_pred cChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcC-CCCccccccccCCCCCcccccCHHHHHHHHHHHH
Q 015139 327 TNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 404 (412)
Q Consensus 327 ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~l 404 (412)
|||+|++||++|||+|+| +.+.|+.|+.||.+++++| ++|+||| | +++|+||+++||++|
T Consensus 305 ANPtAlllS~vmMLrhm~-------l~~~A~~I~~Av~~ti~eg~~rT~DLG----G-------ka~~seft~aVc~~l 365 (365)
T KOG0785|consen 305 ANPTALLLSAVMMLRHMG-------LNDQADQIESAVFKTIAEGKIRTPDLG----G-------KATTSEFTDAVCDRL 365 (365)
T ss_pred CCcHHHHHHHHHHHHHcC-------chhHHHHHHHHHHHHHhccCccCcccC----C-------CccchHHHHHHHhcC
Confidence 999999999999999988 6899999999999999999 7999999 8 899999999999875
No 24
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=8.7e-99 Score=768.56 Aligned_cols=350 Identities=20% Similarity=0.214 Sum_probs=299.5
Q ss_pred EEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhhcC--CCCCHHHHHHHHcCCeeEecccCCCCc
Q 015139 12 IVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATD--DKVTVESAEATLKYNVAIKCATITPDE 82 (412)
Q Consensus 12 I~vi~GDGiGpEv~~~~~~vl~~~-------~~~i~~~~~~~G~~~~~~~g--~~lp~~~~dai~~~~v~lkg~~~~p~~ 82 (412)
|+||||||||||||+++++||.+. +++|+|+++++|+++++++| +++|++++++|+++|++||||+++|..
T Consensus 29 I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~~ 108 (416)
T TIGR00183 29 IPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPVG 108 (416)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999988632 15999999999999999999 999999999999999999999999953
Q ss_pred hhHHHHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCC
Q 015139 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKD 162 (412)
Q Consensus 83 ~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~ 162 (412)
. +++|+|+.||++||||+|+||++. +|++ .+|++ ...++|++||||||||+|+|.+.
T Consensus 109 ~---------~~~s~~l~LR~~ldLyaNvRP~k~--~pgl----~s~~~--------~~~~vDivIvREnteG~Y~g~~~ 165 (416)
T TIGR00183 109 G---------GIRSLNVALRQELDLYVCLRPVRY--YKGV----PSPVK--------HPEKVDMVIFRENTEDIYAGIEW 165 (416)
T ss_pred c---------cccCcHHHHHHHcCCEEEEeEeec--CCCC----CCcCC--------CCCCCCEEEEEeCCCCccccccc
Confidence 2 478999999999999999999854 3443 34543 13589999999999999998752
Q ss_pred ccc---cee----eccccC------CCceEEE-eeeCHHHHHHHHHHHHHHHHcCC-CCEEEEeCCCccccccHHHHHHH
Q 015139 163 EKT---ELE----VYNFTG------EGGVALS-MYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIF 227 (412)
Q Consensus 163 ~~~---~~~----~~~~~~------~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~-~~Vt~v~KaNvl~~tdglf~~~~ 227 (412)
... ... ..+..+ ..+++++ ++||+++++||+|+||+||++|+ ++||+|||+|||+.|||+|+++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~ 245 (416)
T TIGR00183 166 AEGSEEAKKLIRFLQNELGVKKIRFPEDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWG 245 (416)
T ss_pred ccCcccceeeecccccccCccccccccccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHH
Confidence 210 000 000001 1357888 99999999999999999999995 57999999999999999999999
Q ss_pred HHHHHhhcCCcccc-------------CCeEEceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccc
Q 015139 228 QEVYEANWKSKFEA-------------AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTS 293 (412)
Q Consensus 228 ~ev~a~~yp~~~~~-------------~~I~~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapS 293 (412)
.||++++||.+|+. ++|+++|++||++|||||++|++| ||||+|||||||||++|+++|||||+||
T Consensus 246 ~eva~~ey~~~~~~~~lw~~~~~p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapS 325 (416)
T TIGR00183 246 YELAKKEFGAECITWGLWDKYKNPNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPG 325 (416)
T ss_pred HHHHHHHHhHhhhhccccccccCcccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcce
Confidence 99953368433222 289999999999999999999999 9999999999999999999999999999
Q ss_pred eeeCCCCceEEEccccccccccccccccCCCcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCC
Q 015139 294 VLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMT 373 (412)
Q Consensus 294 anig~~~~~a~FEp~HGSAp~~~~~diaGk~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T 373 (412)
+|+|++ ++||||+||||| ||||||+ |||+|+|||++|||+||| +.++|++|++||.+++++|++|
T Consensus 326 anig~~--~alFEp~HGSAP-----diAGk~i-ANP~a~IlS~amML~~lg-------~~~~A~~Ie~AV~~~l~~G~~T 390 (416)
T TIGR00183 326 ANIGDE--IGIFEATHGTAP-----KYAGQDK-VNPGSIILSGEMMLEHMG-------WKEAADLIKKAMEKAIASKIVT 390 (416)
T ss_pred eeeCCC--ceEEECCCCCch-----hhcCCCC-CCcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCcc
Confidence 999987 599999999999 9999999 999999999999999977 5899999999999999999999
Q ss_pred ccccccccCCCCCcccccCHHHHHHHHHHHH
Q 015139 374 KDLALIIHGSKMTREHYLNTEEFIDAVADDL 404 (412)
Q Consensus 374 ~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~l 404 (412)
+||+...+|. +.++|+||+|+|+++|
T Consensus 391 ~Dl~~~~gg~-----~~~~T~e~~daI~~~l 416 (416)
T TIGR00183 391 YDFARLMDGA-----KEVKCSEFAEAIIENM 416 (416)
T ss_pred cccccccCCC-----cccCHHHHHHHHHhhC
Confidence 9994110041 1489999999999875
No 25
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=2.9e-98 Score=759.52 Aligned_cols=351 Identities=19% Similarity=0.166 Sum_probs=296.6
Q ss_pred EEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhhcCC--CCCHHHHHHHHcCCeeEecccCCCCc
Q 015139 12 IVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 82 (412)
Q Consensus 12 I~vi~GDGiGpEv~~~~~~vl~~~-------~~~i~~~~~~~G~~~~~~~g~--~lp~~~~dai~~~~v~lkg~~~~p~~ 82 (412)
|++|||||||||||+++++||.++ +++|+|.++++|+++++++|+ +||++++++|++++++||||+++|.+
T Consensus 31 I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~~ 110 (474)
T PRK07362 31 IPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPIG 110 (474)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999998632 258999999999999999997 79999999999999999999999954
Q ss_pred hhHHHHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCC
Q 015139 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKD 162 (412)
Q Consensus 83 ~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~ 162 (412)
. +++|+|++|||+||||+|+||+++ +|++ .+|++ ...++|+||+||||||+|+|.+.
T Consensus 111 ~---------g~~s~~l~LRk~ldLyaNvRPvr~--~pgl----~sp~k--------~~~~iD~vIvRENTEGlY~G~~~ 167 (474)
T PRK07362 111 G---------GIRSLNVALRQIFDLYSCVRPCRY--YAGT----PSPHK--------NPEKLDVIVYRENTEDIYMGIEW 167 (474)
T ss_pred c---------CccchHHHHHHHcCCceeeeEeec--cCCC----CCccc--------CCCCCCEEEEEECCCceeccccc
Confidence 3 467889999999999999999864 3443 45654 13589999999999999999763
Q ss_pred cc---cceee----c-c---c------cC-CCceEEE-eeeCHHHHHHHHHHHHHHHHcC---CCCEEEEeCCCcccccc
Q 015139 163 EK---TELEV----Y-N---F------TG-EGGVALS-MYNTDESIRAFAEASMNTAYQK---KWPLYLSTKNTILKKYD 220 (412)
Q Consensus 163 ~~---~~~~~----~-~---~------~~-~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r---~~~Vt~v~KaNvl~~td 220 (412)
.. ..... . . . .+ ..+++++ ++|||++++||+|+||+||++| +++||+|||+|||++|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~ 247 (474)
T PRK07362 168 EAGDEIGDKLIKHLNEEVIPASPELGKRQIPLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTE 247 (474)
T ss_pred ccccccchhcccccccccccccccccccccccceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccch
Confidence 20 00000 0 0 0 00 1346889 9999999999999999999998 35799999999999999
Q ss_pred HHHHHHHHHHHHhhc-------------------CCc-----------------------------------------c-
Q 015139 221 GRFKDIFQEVYEANW-------------------KSK-----------------------------------------F- 239 (412)
Q Consensus 221 glf~~~~~ev~a~~y-------------------p~~-----------------------------------------~- 239 (412)
|+|++|+.||+.++| |+. .
T Consensus 248 glf~~~~~evA~~~~~~~~v~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (474)
T PRK07362 248 GAFRDWGYELATTEFRDECVTERESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGK 327 (474)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccCccccccccccccccccccccccccccccccccccccchhhcccccc
Confidence 999999889953244 420 0
Q ss_pred ccCCeEEceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccc
Q 015139 240 EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV 318 (412)
Q Consensus 240 ~~~~I~~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~ 318 (412)
..++|.+++++||++|||||++|++| ||||+|||||||||++|+|+|||||+||+|+|++ .+||||+|||||
T Consensus 328 ~~~~v~~~~~~vDa~a~~lv~~P~~FDVIVt~NLfGDILSDlaA~lvGglGlaPSANiG~~--~a~FEpvHGSAP----- 400 (474)
T PRK07362 328 WKEKVLVDDRIADSIFQQIQTRPQEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDN--AAIFEATHGTAP----- 400 (474)
T ss_pred CCCcceeehHHHHHHHHHHHhChhhCCEEEEccccchhhhHHHHHhcCCccccceeeeCCC--ceeeecCCCCch-----
Confidence 00358899999999999999999999 9999999999999999999999999999999987 499999999999
Q ss_pred cccCCCcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCcccccCHHHHHH
Q 015139 319 HQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFID 398 (412)
Q Consensus 319 diaGk~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~d 398 (412)
||||||+ |||+|+|||++|||+||| +.++|++|++||.+++++|.+|+||| |........+||+||++
T Consensus 401 dIAGk~i-ANP~A~ILS~aMML~~LG-------~~~~A~~I~~AV~~vl~~g~~T~Dlg----~~~~~~~~~~sT~E~~~ 468 (474)
T PRK07362 401 KHAGLDR-INPGSVILSGVMMLEYLG-------WQEAADLITKGLSAAIANKQVTYDLA----RLMEPPVDPLSCSEFAE 468 (474)
T ss_pred hhcCCCC-cCcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCcccCCC----CccccCCCCcCHHHHHH
Confidence 9999999 999999999999999987 68999999999999999999999998 30000001589999999
Q ss_pred HHHHHH
Q 015139 399 AVADDL 404 (412)
Q Consensus 399 aV~~~l 404 (412)
+|++++
T Consensus 469 aIi~~~ 474 (474)
T PRK07362 469 AIISHF 474 (474)
T ss_pred HHHhcC
Confidence 999863
No 26
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=5.6e-96 Score=736.99 Aligned_cols=338 Identities=28% Similarity=0.304 Sum_probs=292.6
Q ss_pred cEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchhHH
Q 015139 11 PIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVK 86 (412)
Q Consensus 11 ~I~vi~GDGiGpEv~~~~~~vl~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~ 86 (412)
+|++|||||||||||++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|...
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~--- 77 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPP--- 77 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSS---
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEccccccccc---
Confidence 6899999999999999999988654 589999999999999999999999999999999999999999999732
Q ss_pred HHHhhhcCCC--ccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCcc
Q 015139 87 EFVLKQMWKS--PNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEK 164 (412)
Q Consensus 87 e~~l~~~~~s--~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~ 164 (412)
..++ ++++||++||||+|+||+++. |++ +..+|++- ....++|++++||||||+|++.++..
T Consensus 78 ------~~~~~~~l~~lR~~ldl~anvRp~~~~--~~~--~~~~~~~~------~~~~~iDivivREnteG~Y~g~~~~~ 141 (348)
T PF00180_consen 78 ------GIRSENGLLKLRKELDLYANVRPVRSF--PGP--GVPSPLKD------EIPEGIDIVIVRENTEGLYSGIEHEI 141 (348)
T ss_dssp ------SHSHHHHHHHHHHHTTHHEEEEEEEEE--CET--TGGSSBSH------HHHTTSEEEEEEESSSGGGGEEEEEE
T ss_pred ------ccccHHHHHHHHHhcccceeeEEEEEe--ccc--cccccccc------cccCcceEEEecccccCcccCCCCce
Confidence 1122 237899999999999999764 322 22344431 12357999999999999999976542
Q ss_pred cceeeccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcC-CCCEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccC
Q 015139 165 TELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAA 242 (412)
Q Consensus 165 ~~~~~~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r-~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~ 242 (412)
.. ... .++++++ ++|||+++|||+|+||+||++| +++||+|||+|||+.++ +|+++|+||++++||
T Consensus 142 ~~----~~~-~~~~a~~~~~~t~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~yp------ 209 (348)
T PF00180_consen 142 GD----GGT-PDEVAIDTKVITREGIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQEYP------ 209 (348)
T ss_dssp CS----EEE-GSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHTHT------
T ss_pred ee----ccC-CCceEEEeeccccchhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhhcc------
Confidence 11 001 1468999 9999999999999999999999 67899999999999888 999999999533999
Q ss_pred CeEEceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEcccccccccccccccc
Q 015139 243 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 321 (412)
Q Consensus 243 ~I~~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~dia 321 (412)
+|++++++||+++|+||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ++||||+||||| |||
T Consensus 210 ~I~~~~~~vD~~~~~Lv~~P~~fdViv~~Nl~GDIlSDl~a~l~G~lGl~psanig~~~-~a~fEp~HGSAp-----dia 283 (348)
T PF00180_consen 210 DIEVEHMLVDAAAMQLVKNPEQFDVIVTPNLFGDILSDLAAGLVGGLGLAPSANIGPDG-HAMFEPVHGSAP-----DIA 283 (348)
T ss_dssp TSEEEEEEHHHHHHHHHHSGGGESEEEEEHHHHHHHHHHHHHHHTSGGGEEEEEEETSS-EEEEEESSTTTG-----GGT
T ss_pred eeEeeeeechhhhheeecCCcceeEEeecchhHHHHHHHhhhcCCChhhhhhhccCccc-cccccccccccc-----ccc
Confidence 99999999999999999999999 99999999999999999999999999999999544 799999999999 999
Q ss_pred CCCcccChhhHHHHHHHHHHh-hcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCcccccCHHHHHHHH
Q 015139 322 GGETSTNSIASIFAWSRGLAH-RAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAV 400 (412)
Q Consensus 322 Gk~i~ANP~a~IlS~ammL~~-lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV 400 (412)
|||+ |||+|||||++|||+| +| +++.|++|++||.+++++|++|+||| |.- .+.++|+||+|+|
T Consensus 284 Gk~~-aNP~a~Ils~a~mL~~~lg-------~~~~a~~i~~Av~~~l~~g~~T~Dlg----g~~---~~~~~T~e~~daV 348 (348)
T PF00180_consen 284 GKGI-ANPIAMILSAAMMLEHSLG-------LPEAADAIEKAVEKVLEEGIRTPDLG----GSA---TTAVSTEEFGDAV 348 (348)
T ss_dssp TSSH-S-THHHHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHTTEEBGGGH----TTT---CEEBHHHHHHHHH
T ss_pred CCcc-cCcHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHcCCCCcccc----CCC---CCCCCHHHHHhhC
Confidence 9999 9999999999999999 76 68999999999999999999999998 620 1245999999997
No 27
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=2.3e-91 Score=698.89 Aligned_cols=377 Identities=34% Similarity=0.461 Sum_probs=342.6
Q ss_pred EEECCCCchHHHHHHHHHHHhcCCCceE-EEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchhHHHHHhh
Q 015139 13 VEMDGDEMTRVFWKSIKDKLIFPFLELD-IKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLK 91 (412)
Q Consensus 13 ~vi~GDGiGpEv~~~~~~vl~~~~~~i~-~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~~l~ 91 (412)
+.+.||+|.+.+|+.+++.|+.+.++++ |+|||+|.+++++|.+.++-|+++|+++++|++|||+.||+..++.|++|.
T Consensus 2 v~~~gdemtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~lk 81 (393)
T PLN00096 2 VYVAGEEMTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGLK 81 (393)
T ss_pred eeecchHHHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhchh
Confidence 7899999999999999999999999995 999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccHHHHhhcCc-eEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceee-c-cCCccccee
Q 015139 92 QMWKSPNGTIRNILNG-TVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVF-E-GKDEKTELE 168 (412)
Q Consensus 92 ~~~~s~~~~LRk~ldl-yan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~-g-~~~~~~~~~ 168 (412)
+.|+|||.+||+.||. .+++.||.|+++| |+|+.|++|.||..+|.|+. |+++..+++-.+.| . .|+.+..++
T Consensus 82 ~~w~sPNgtiR~~l~G~tvfR~pi~~~~i~---~~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~~~ 157 (393)
T PLN00096 82 KAWGSPNGAMRRGWNGITISRDTIHIDGVE---LGYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIVVD 157 (393)
T ss_pred hhcCCCcHHHHhhcCCceEeeCCEecCCCC---CCccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceEEE
Confidence 9999999999999999 9999999998775 89999999999999999999 99999999988876 3 344567778
Q ss_pred eccccCCCceEEEeeeCHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHHHHHhhcCCcccc-----CC
Q 015139 169 VYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA-----AG 243 (412)
Q Consensus 169 ~~~~~~~~~~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~-----~~ 243 (412)
+++|.+.++++..+++|.+.++||||+||+||++|+++||++||+||||+++|||+ +|+||++++|+++|++ ++
T Consensus 158 ~~~f~~~~gv~~~~~N~~~si~RiAr~AF~~A~~r~~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p~ 236 (393)
T PLN00096 158 DRTITDDLNAVVTYHNPLDNVHHLARIFFGRCLDAGIVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKSG 236 (393)
T ss_pred EEecCCCCeEEEEeccCHHHHHHHHHHHHHHHHHhCCcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCCc
Confidence 88888436788889999999999999999999999999999999999999999998 9999966899887877 67
Q ss_pred eEEceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCC--Cc-eEEEcccccccccccccc
Q 015139 244 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD--GK-TIEAEAAHGTVTRHYRVH 319 (412)
Q Consensus 244 I~~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~--~~-~a~FEp~HGSAp~~~~~d 319 (412)
|+++|++||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ +. +++|||+|||||++++++
T Consensus 237 V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp~HGSApdiag~~ 316 (393)
T PLN00096 237 DELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEASHGTVTDMDEAR 316 (393)
T ss_pred eEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEcCCCChHHhhhhh
Confidence 8999999999999999999999 9999999999999999999999999999999954 52 389999999999444444
Q ss_pred ccCCC-cccChhhHHHHHHHHHHhhcccCCcc-chHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCcccccCHHHHH
Q 015139 320 QKGGE-TSTNSIASIFAWSRGLAHRAKLDNNA-RLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFI 397 (412)
Q Consensus 320 iaGk~-i~ANP~a~IlS~ammL~~lg~l~~~~-~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~ 397 (412)
..||+ + |||+|+|||++|||+|+++++++. ++.++|++|++||.+|+++|.+|+||+ |. ..++|+||+
T Consensus 317 ~~Gk~~~-ANPiA~IlA~a~mL~~~~~l~g~~~~l~~~A~~Ie~Av~~tie~G~~T~DL~----g~-----~~~tT~ef~ 386 (393)
T PLN00096 317 LRGEETS-LNPLGMVEGLIGAMNHAADVHGGKERVHPFTAKLRAVIHKLFREGRGTRDLC----GA-----GGLTTEQFI 386 (393)
T ss_pred hcCCCCc-cChHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHHHHHhcCCcCcCCC----CC-----CCCCHHHHH
Confidence 44995 8 999999999999999997665432 468899999999999999999999996 40 158999999
Q ss_pred HHHHHHH
Q 015139 398 DAVADDL 404 (412)
Q Consensus 398 daV~~~l 404 (412)
|+|+++|
T Consensus 387 daI~~~L 393 (393)
T PLN00096 387 DAVAEEL 393 (393)
T ss_pred HHHHHhC
Confidence 9999875
No 28
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=4.2e-86 Score=651.16 Aligned_cols=365 Identities=35% Similarity=0.453 Sum_probs=326.1
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhc----CC---CceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCc
Q 015139 10 NPIVEMDGDEMTRVFWKSIKDKLIF----PF---LELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (412)
Q Consensus 10 ~~I~vi~GDGiGpEv~~~~~~vl~~----~~---~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~ 82 (412)
.-|-+|.|||||||+++++.+|+.+ ++ .+|+|.++++|.++++.||+.||+||+++|+++.|++|||++||.+
T Consensus 19 piiP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TPvg 98 (407)
T COG0538 19 PIIPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTPVG 98 (407)
T ss_pred cccceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCccc
Confidence 4567899999999999999998654 34 8999999999999999999999999999999999999999999975
Q ss_pred hhHHHHHhhhcCCCccHHHHhhcCceEEeeeeeec-cCCCCCCC-CCCceeecccccCCccCCccEEEecCCccceeecc
Q 015139 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICK-NVPRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEG 160 (412)
Q Consensus 83 ~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~-~~p~l~~~-~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~ 160 (412)
. +|+|||++||+.||||+|+|||+++ ++|+++++ |..|++|+|||+||+|.++||..-.+....+-+-.
T Consensus 99 ~---------g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl 169 (407)
T COG0538 99 K---------GWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFL 169 (407)
T ss_pred c---------cccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhh
Confidence 4 8999999999999999999999997 99999888 79999999999999999999988877777764422
Q ss_pred CCcccceeeccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcCCC-CEEEEeCCCccccccHHHHHHHHHHHHhh----
Q 015139 161 KDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEAN---- 234 (412)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~ev~a~~---- 234 (412)
. .++++.+.+++. +..+. +.+|++++.|++|.||+||.+++| .||++||.||||.|+|.|++|+.|||.++
T Consensus 170 ~-~e~~~~~i~~pe--~~GIgikp~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~ 246 (407)
T COG0538 170 E-DEMGVKKIRFPE--DSGIGIKPISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGD 246 (407)
T ss_pred h-cccccceEecCC--CCceEEEecCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhcccc
Confidence 2 123444455553 34455 788999999999999999999984 69999999999999999999999997553
Q ss_pred ----cCCccccCC----eEEceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEE
Q 015139 235 ----WKSKFEAAG----IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEA 305 (412)
Q Consensus 235 ----yp~~~~~~~----I~~~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~F 305 (412)
|...|+..+ |.++|+++|+|.+|++++|+.| ||+|.||.||++||.+|+++|||||+||+|+|+. +++|
T Consensus 247 ~~~~~~~~~~~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~~~--~~~f 324 (407)
T COG0538 247 EVVTGKEKFELKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIGDG--TAEF 324 (407)
T ss_pred cccccchhhhccCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccceecCc--eEEE
Confidence 455677778 9999999999999999999999 9999999999999999999999999999999954 6999
Q ss_pred ccccccccccccccccCCCcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCC
Q 015139 306 EAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKM 385 (412)
Q Consensus 306 Ep~HGSAp~~~~~diaGk~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~ 385 (412)
||+||||| ++|||+. +||+|.|||+.|||+|+| |.++|+.|+.||.+++++|++|+||+..+.|.
T Consensus 325 EA~HGTap-----k~aG~~~-~Np~a~Ils~~~ml~~~G-------w~eaa~li~~a~~~ti~~~~vT~DlArl~~~~-- 389 (407)
T COG0538 325 EATHGTAP-----KYAGKDS-TNPIASILSGTMMLRHRG-------WLEAADLIEKAVEDTIESGKVTYDLARLMGGA-- 389 (407)
T ss_pred EeccCccc-----cccCcCC-CCcHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHHhCceeHHHHHhhCCC--
Confidence 99999999 7889998 999999999999999998 67899999999999999999999998765442
Q ss_pred CcccccCHHHHHHHHHHHHH
Q 015139 386 TREHYLNTEEFIDAVADDLR 405 (412)
Q Consensus 386 ~~~~~~sT~e~~daV~~~l~ 405 (412)
.+.++|+||+|+|+++|+
T Consensus 390 --~~~v~tsEF~d~ii~~l~ 407 (407)
T COG0538 390 --KRYLSTSEFADAIIENLK 407 (407)
T ss_pred --ccceeHHHHHHHHHHhcC
Confidence 126999999999999873
No 29
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-85 Score=636.89 Aligned_cols=326 Identities=22% Similarity=0.242 Sum_probs=297.6
Q ss_pred cccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchhHHHH
Q 015139 9 ANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 88 (412)
Q Consensus 9 ~~~I~vi~GDGiGpEv~~~~~~vl~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~~~e~ 88 (412)
.++|++|||||||||++..+.+++.+.+.|++|+++++++. .+.++..+++++++|++++|+|||-+.||...
T Consensus 42 ~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~~--~~~~~~~~~e~v~Si~rNkValkG~i~t~~~~----- 114 (375)
T KOG0784|consen 42 RHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSGS--NKESSEDLDEAVESIKRNKVALKGNIETPDLP----- 114 (375)
T ss_pred cceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccCC--ccccchhHHHHHHHHHhcceeEeecccCCCCc-----
Confidence 48999999999999999999999999999999999999872 23445678999999999999999999999322
Q ss_pred HhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCccccee
Q 015139 89 VLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEKTELE 168 (412)
Q Consensus 89 ~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~~~~~ 168 (412)
.+.+|.|++||++||||||+ ++|+++|++.. | +.++|+|++||||||+|++.+++.
T Consensus 115 ---g~~~s~n~~LR~~LDLyanv--v~~~slpG~~t---------R------h~~vDiviIRENTEGEYs~LEHE~---- 170 (375)
T KOG0784|consen 115 ---GGAKSLNVKLRKELDLYANV--VHCKSLPGVKT---------R------HENVDIVIIRENTEGEYSGLEHES---- 170 (375)
T ss_pred ---cchhhhHHHHHHhhhhhhhe--eeeeccCCccc---------c------cCCccEEEEecCCccccccccccc----
Confidence 25679999999999999999 56777776543 3 469999999999999999998753
Q ss_pred eccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcCCC-CEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCeEE
Q 015139 169 VYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWY 246 (412)
Q Consensus 169 ~~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~~ 246 (412)
.+++..+ +++|++.+|||+||||+||.+.+| |||+|||||+||..||||+++|+|| ++.|| +|++
T Consensus 171 ------VpGVVEsLKVvT~~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~ev-a~~Yp------~I~~ 237 (375)
T KOG0784|consen 171 ------VPGVVESLKVVTRFKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEV-AKKYP------DITF 237 (375)
T ss_pred ------CcchhheeeeehhhhhHHHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHH-HhcCC------CccH
Confidence 2688999 999999999999999999999974 7999999999999999999999999 56699 9999
Q ss_pred ceeeHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEcc--ccccccccccccccCC
Q 015139 247 EHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEA--AHGTVTRHYRVHQKGG 323 (412)
Q Consensus 247 ~~~~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp--~HGSAp~~~~~diaGk 323 (412)
+.++||++|||||.+|++| |+|+|||||.|||.+||+|+||.|+.|++|+|++ +++||| .|++. +++||
T Consensus 238 e~miVDN~~MQlvs~P~qFDvmv~pnlYgniisNiaaGlvGG~Glv~G~n~G~~--yAVFE~g~r~~~~------~~~g~ 309 (375)
T KOG0784|consen 238 EEMIVDNACMQLVSRPQQFDVMVMPNLYGNIISNIAAGLVGGAGLVSGANYGDD--YAVFEPGARHTGT------SIAGK 309 (375)
T ss_pred HHhhHHHhHHHhhcCchheeeEechHHHHHHHHHHHHHhcCCCCcccccccccc--eEEecccccccch------hhhcc
Confidence 9999999999999999999 9999999999999999999999999999999999 599999 46664 69999
Q ss_pred CcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcC-CCCccccccccCCCCCcccccCHHHHHHHHHH
Q 015139 324 ETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVAD 402 (412)
Q Consensus 324 ~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~ 402 (412)
++ |||+|||||++|||+||| ++.+|++|+.||.+|+.+| ++|+||| | ..||++|+++||.
T Consensus 310 ~~-aNPtA~llss~~MLrHL~-------l~~~Ad~i~~Av~~vi~egk~rT~DlG----G-------~~Tt~dvi~avI~ 370 (375)
T KOG0784|consen 310 NI-ANPTAMLLSSVDMLRHLG-------LPSHADRISTAVKRVIDEGKIRTKDLG----G-------QSTTQDVIDAVIA 370 (375)
T ss_pred cc-cCcHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHhcCcccccccC----C-------CcchHHHHHHHHH
Confidence 99 999999999999999987 7899999999999999999 8999998 7 7999999999999
Q ss_pred HHH
Q 015139 403 DLR 405 (412)
Q Consensus 403 ~l~ 405 (412)
+|+
T Consensus 371 ~l~ 373 (375)
T KOG0784|consen 371 NLR 373 (375)
T ss_pred Hhc
Confidence 986
No 30
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-84 Score=605.74 Aligned_cols=345 Identities=20% Similarity=0.191 Sum_probs=306.8
Q ss_pred cccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCCCchh
Q 015139 9 ANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (412)
Q Consensus 9 ~~~I~vi~GDGiGpEv~~~~~~vl~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p~~~~ 84 (412)
.|+|+++|||||||||+..+.+||.++ +++|+|++.++|+.+.+.+|.|+|+|++++.+++|+.|.|+++.+.++.
T Consensus 4 ~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw~~ 83 (363)
T KOG0786|consen 4 RYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWDK 83 (363)
T ss_pred cceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcccCc
Confidence 489999999999999999999998765 6899999999999999999999999999999999999999999887652
Q ss_pred HHHHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeeccCCcc
Q 015139 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFEGKDEK 164 (412)
Q Consensus 85 ~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g~~~~~ 164 (412)
++++++.. .+.||+.|.+|+|+||+.+ +|.++.. ++|+ +| .-.++|+++|||.|.|.|||...++
T Consensus 84 ----~~lrpe~g-ll~ir~~lkvfanlrp~~~--~~qlvd~--s~lk--~e----~aeg~d~mvvrel~ggiyfge~r~e 148 (363)
T KOG0786|consen 84 ----NHLRPEMG-LLKIRRDLKVFANLRPATV--LPQLVDA--STLK--KE----VAEGVDMMVVRELTGGIYFGEPRNE 148 (363)
T ss_pred ----CCcChhhh-HHHHHHHHHHHhcCCcchh--hHhhhcc--cccc--HH----HhcCcceEEeeeecCceeecCcccC
Confidence 12222323 3579999999999999865 3555432 5554 22 4679999999999999999976532
Q ss_pred cceeeccccCCCceEEE-eeeCHHHHHHHHHHHHHHHHcCC--CCEEEEeCCCccccccHHHHHHHHHHHHhhcCCcccc
Q 015139 165 TELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKK--WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA 241 (412)
Q Consensus 165 ~~~~~~~~~~~~~~a~~-~~~Tr~~~eRiar~AFe~A~~r~--~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~ 241 (412)
.| ++++++ ..|+-+++.||+|.||+.|++|+ .++|++|||||+. ++.|||+.+.+..+.|||
T Consensus 149 --------ng-~gva~dte~Ya~~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~~~k~EyP----- 213 (363)
T KOG0786|consen 149 --------NG-EGVAFDTEIYAAHEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKALKSEYP----- 213 (363)
T ss_pred --------CC-cceeeccccccHHHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHHHHHhhCC-----
Confidence 33 689999 99999999999999999999998 5899999999998 999999999988789999
Q ss_pred CCeEEceeeHHHHHHHHHhCCCcc--EEEecCcccccccchhhhhcCCcccccceeeC-----CCCceEEEccccccccc
Q 015139 242 AGIWYEHRLIDDMVAYALKSEGGY--VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVC-----PDGKTIEAEAAHGTVTR 314 (412)
Q Consensus 242 ~~I~~~~~~VDa~~~~lv~~P~~F--Vivt~NlfGDILSDlaa~l~GglGlapSanig-----~~~~~a~FEp~HGSAp~ 314 (412)
++++.|+|||+++|+||++|.+| +|||.|+|||||||.|+.+.||+||.||++++ +.+ +++|||+|||||
T Consensus 214 -~l~l~hqliDsAAM~Lvk~P~~lng~ivT~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~-~gL~EPiHGSAP- 290 (363)
T KOG0786|consen 214 -DLELSHQLIDSAAMQLVKDPKQLNGTIVTNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESG-PGLFEPIHGSAP- 290 (363)
T ss_pred -CcchhhhhhhHHHHHHhcCchhcCceEEeccchhhhhccccccccCccccccchhhcCCcccccC-CcccccCCCCCC-
Confidence 99999999999999999999999 99999999999999999999999999999998 455 799999999999
Q ss_pred cccccccCCCcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCcccccCHH
Q 015139 315 HYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTE 394 (412)
Q Consensus 315 ~~~~diaGk~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~ 394 (412)
||+|||+ +||+|+|||++|||.| .|+ ++++|++||+||.++|..|++|.||| | ..||.
T Consensus 291 ----Diagk~k-vNPlaTILSAamlLky--gLn----~pkeakaIEdAV~kvLd~G~rTgDlg----g-------~~st~ 348 (363)
T KOG0786|consen 291 ----DIAGKDK-VNPLATILSAAMLLKY--GLN----EPKEAKAIEDAVVKVLDKGFRTGDLG----G-------PGSTL 348 (363)
T ss_pred ----CcCCCCc-cChHHHHHHHHHHHHh--cCC----ChhhHHHHHHHHHHHHhccccccccC----C-------CCcch
Confidence 9999999 9999999999999999 687 68999999999999999999999998 6 56777
Q ss_pred HHHHHHHHHHHHHh
Q 015139 395 EFIDAVADDLRARL 408 (412)
Q Consensus 395 e~~daV~~~l~~~~ 408 (412)
+.+++|.+.+.++|
T Consensus 349 ~~~kav~EEv~Kil 362 (363)
T KOG0786|consen 349 VGCKAVGEEVLKIL 362 (363)
T ss_pred hhHHHHHHHHHHhc
Confidence 77777777776665
No 31
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.3e-74 Score=551.14 Aligned_cols=409 Identities=77% Similarity=1.253 Sum_probs=388.0
Q ss_pred CCccceeecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeEecccCCC
Q 015139 1 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITP 80 (412)
Q Consensus 1 ~~~~~~~m~~~I~vi~GDGiGpEv~~~~~~vl~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~~p 80 (412)
++|+||++.+||+.+.||+|.+.||..+++.|+-+.+++++.++|+|.+++++|.+.++.++.+|+++++|++||++.||
T Consensus 10 ~~~~kikv~~pvVemdGDEmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITP 89 (422)
T KOG1526|consen 10 SGMSKIKVANPVVEMDGDEMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITP 89 (422)
T ss_pred chhceeeccCCeEEecccHHHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHhhhcCCCccHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEecCCccceeec-
Q 015139 81 DEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFE- 159 (412)
Q Consensus 81 ~~~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivrenteg~y~g- 159 (412)
...++.|++|.+.|+|||.+||..|+..+++.||.|+++|+|+|+|..||+|.||..+|.|+..|+|+-++++-.+-|.
T Consensus 90 DEaRv~Ef~LkkMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~ 169 (422)
T KOG1526|consen 90 DEARVEEFNLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTP 169 (422)
T ss_pred cHHHHHHhhhHHHhcCCCcchhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998888773
Q ss_pred -cCCcccceeeccccCCCceEEEeeeCHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHHHHHhhcCCc
Q 015139 160 -GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 238 (412)
Q Consensus 160 -~~~~~~~~~~~~~~~~~~~a~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~ 238 (412)
.+.....+.+++|++ ++++..+++|.+.++-+|+.+|+||.+++.++++.+|..+||.+||.|.++|+|++.++|+.+
T Consensus 170 ~dg~~~~~~~V~~f~~-~G~~~~m~~~dds~~~FAhssf~~Al~kk~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~k 248 (422)
T KOG1526|consen 170 SDGTQKVTLKVYDFKG-SGVAAMMYNTDDSIRGFAHSSFQYALQKKWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSK 248 (422)
T ss_pred CCCCcceeEEEEecCC-CceeEEEeeccchhhHHHHHHHHHHHHhcCceeeeccchHHHHhCChHHHHHHHHHHHHHHHH
Confidence 333456678888887 788888888999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCeEEceeeHHHHHHHHHhCCCccEEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccc
Q 015139 239 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV 318 (412)
Q Consensus 239 ~~~~~I~~~~~~VDa~~~~lv~~P~~FVivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~ 318 (412)
|+..+|+|+|++||+|.+|++++-+.|||.|.|+.||+-||+.|+-.|||||+.|..+.+||++..-|++|||..|||+.
T Consensus 249 fe~~~IwYEHRLIDDmVAqa~KS~GGfvwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~ 328 (422)
T KOG1526|consen 249 FEALGIWYEHRLIDDMVAQAMKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRM 328 (422)
T ss_pred HHhhcchhhhhhHHHHHHHHHhcCCceEEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeeccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877889999999999999
Q ss_pred cccCCCcccChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCCCCccccccccCCCCCcccccCHHHHHH
Q 015139 319 HQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFID 398 (412)
Q Consensus 319 diaGk~i~ANP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~d 398 (412)
+..|+..|.||||+|++|.-.|.|+|.|++|+.+..+|+.||.|+-+++++|..|.||+.+.+| ..++...++|+||.|
T Consensus 329 hqkG~eTSTN~IASIFAWtRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~G~MTKDLal~i~g-~~~r~~y~~T~eFid 407 (422)
T KOG1526|consen 329 HQKGQETSTNSIASIFAWTRGLAHRAKLDNNEALAKFANALEKACIETVESGKMTKDLALCIHG-KVERSDYLNTEEFID 407 (422)
T ss_pred HhcCCCccCcchHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhccchHhHHHHhcC-CccccccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887777 455556799999999
Q ss_pred HHHHHHHHHhccC
Q 015139 399 AVADDLRARLSGK 411 (412)
Q Consensus 399 aV~~~l~~~~~~~ 411 (412)
+|.++|+..|.+.
T Consensus 408 av~~~L~~~~~~~ 420 (422)
T KOG1526|consen 408 AVASNLKKKLAQA 420 (422)
T ss_pred HHHHHHHHHHhhc
Confidence 9999998877653
No 32
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=96.19 E-value=0.087 Score=56.58 Aligned_cols=184 Identities=17% Similarity=0.202 Sum_probs=106.2
Q ss_pred CceEEEeeeCHHHHHHHHHHHHHHHHcCCCC-EEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCeEEceee-HHH
Q 015139 176 GGVALSMYNTDESIRAFAEASMNTAYQKKWP-LYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRL-IDD 253 (412)
Q Consensus 176 ~~~a~~~~~Tr~~~eRiar~AFe~A~~r~~~-Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~~~~~~-VDa 253 (412)
.+++..+.--..-++-+++.|.++||..+-+ |--.|+.-. -|. +....| +.|=..+...|+.+.-+- +|+
T Consensus 449 GDIwRmcq~KD~pI~DWVkLAV~Rar~tg~paiFWLD~~RA---HDa---~lI~kV--~~yL~~hdt~gldi~Im~P~~A 520 (735)
T PF03971_consen 449 GDIWRMCQTKDAPIRDWVKLAVNRARATGTPAIFWLDENRA---HDA---ELIKKV--EKYLKDHDTSGLDIRIMSPVEA 520 (735)
T ss_dssp T-EEEEEEE-HHHHHHHHHHHHHHHHHHT--EEEE--TTSH---HHH---HHHHHH--HHHHTTS--TT--EEEE-HHHH
T ss_pred CcchhhhcccCchHHHHHHHHHHHHHhhCCCeEEecCCCCc---cHH---HHHHHH--HHHHHhcCCCCCceEeeCHHHH
Confidence 3455444445677999999999999998876 444454322 233 333444 223222333467776664 455
Q ss_pred HHHH--HHhCCCccEEEecCcccccccchhhhhc--CCcccccceeeCCCCceEEEcc-cccccccccccccc-CCCccc
Q 015139 254 MVAY--ALKSEGGYVWACKNYDGDVQSDFLAQGF--GSLGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQK-GGETST 327 (412)
Q Consensus 254 ~~~~--lv~~P~~FVivt~NlfGDILSDlaa~l~--GglGlapSanig~~~~~a~FEp-~HGSAp~~~~~dia-Gk~i~A 327 (412)
+-.- -++.-..-+-||.|..=|.|+||.--|- -|-=|+.-.=+=..| ++||. .-||||+|-.+=+. |-=. =
T Consensus 521 ~~~sler~r~G~dTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm~GG--GLFETGAGGSAPKHVqQf~eEnhLR-W 597 (735)
T PF03971_consen 521 TRFSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGG--GLFETGAGGSAPKHVQQFVEENHLR-W 597 (735)
T ss_dssp HHHHHHHHHTT---EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBTTS---EEEES-SS---HHHHHHHCCCS-----
T ss_pred HHHHHHHHHcCCCeEEeechHHHhhhcchhhhhhhccchhhhhhhhcccCC--ceeccCCCCCccHHHHHHHHcCccc-c
Confidence 5333 3444444488999999999999986552 222222211121233 89999 78999977644232 2223 6
Q ss_pred ChhhHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcC
Q 015139 328 NSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG 370 (412)
Q Consensus 328 NP~a~IlS~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G 370 (412)
+.+|=+|+.+--|+|+++..+|+...-.|+.|..|+.+.|+++
T Consensus 598 DSLGEFlALa~Sle~l~~~~~n~ka~vLa~tLd~At~~~L~n~ 640 (735)
T PF03971_consen 598 DSLGEFLALAVSLEHLAQKTGNPKAKVLADTLDAATGKFLENN 640 (735)
T ss_dssp -THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Confidence 8899999999999999988777666778999999999999886
No 33
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=95.85 E-value=0.12 Score=55.47 Aligned_cols=178 Identities=14% Similarity=0.171 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCC-EEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCeEEceee-HHHHH--HHHHhC
Q 015139 186 DESIRAFAEASMNTAYQKKWP-LYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRL-IDDMV--AYALKS 261 (412)
Q Consensus 186 r~~~eRiar~AFe~A~~r~~~-Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~~~~~~-VDa~~--~~lv~~ 261 (412)
..-++-+++.|.++||..+-+ |--.|+.-. -|.-..+-++.. -++| ...|+.+.-+- ++++- +.-+++
T Consensus 463 D~pI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HDa~lI~kV~~y-L~~h----dt~gldi~Im~p~~A~~~slerir~ 534 (741)
T TIGR00178 463 DAPIQDWVKLAVTRARATGTPAVFWLDPARA---HDAQLIKKVETY-LKDH----DTEGLDIQILSPVEATRFSLARIRR 534 (741)
T ss_pred CchHHHHHHHHHHHHHhcCCCeEEEeCCCch---hHHHHHHHHHHH-HHhc----CCCCCceEeeCHHHHHHHHHHHHHc
Confidence 456888999999999998866 444444321 122222222222 1333 22356666553 45553 334455
Q ss_pred CCccEEEecCcccccccchhhhhc--CCc---ccccceeeCCCCceEEEcc-ccccccccccccc-cCCCcccChhhHHH
Q 015139 262 EGGYVWACKNYDGDVQSDFLAQGF--GSL---GLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQ-KGGETSTNSIASIF 334 (412)
Q Consensus 262 P~~FVivt~NlfGDILSDlaa~l~--Ggl---GlapSanig~~~~~a~FEp-~HGSAp~~~~~di-aGk~i~ANP~a~Il 334 (412)
-..-+-||.|..=|.|+||.--|- -|- -+.|=.| .| ++||. .-||||+|-.+=+ -|-=. =+.+|=+|
T Consensus 535 G~dTISVTGNVLRDYLTDLFPILElGTSAKMLSIVPLm~---GG--GLFETGAGGSAPKHVqQf~eEnhLR-WDSLGEFl 608 (741)
T TIGR00178 535 GEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMA---GG--GLFETGAGGSAPKHVQQFLEENHLR-WDSLGEFL 608 (741)
T ss_pred CCCeEEEechhHHhhhcchhhhhhhccchhhhhhhhccc---CC--ceecCCCCCCccHHHHHHHHcCccc-ccchhhHH
Confidence 555588999999999999986653 111 1222222 23 79999 7899997664422 23223 67899999
Q ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHHcCC-CCcccc
Q 015139 335 AWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGK-MTKDLA 377 (412)
Q Consensus 335 S~ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G~-~T~Dlg 377 (412)
+.+--|+||++..+|+...-.|+.|..|+.+.|+++. ..+-+|
T Consensus 609 ALa~Sle~la~~~~n~ka~vLa~tLd~At~k~L~n~ksPsRkvg 652 (741)
T TIGR00178 609 ALAASLEHLGNATGNPKALVLADTLDAATGKLLDNNKSPSRKVG 652 (741)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccC
Confidence 9999999999877676666679999999999998763 333443
No 34
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=93.77 E-value=0.043 Score=54.92 Aligned_cols=134 Identities=19% Similarity=0.061 Sum_probs=66.9
Q ss_pred eeeCHHHHHHHHHHHHHHHHc-CC--CCEEEEeCCCccccccHHHH-H-------HHHHHHHhhcCCccccCCeEEc-ee
Q 015139 182 MYNTDESIRAFAEASMNTAYQ-KK--WPLYLSTKNTILKKYDGRFK-D-------IFQEVYEANWKSKFEAAGIWYE-HR 249 (412)
Q Consensus 182 ~~~Tr~~~eRiar~AFe~A~~-r~--~~Vt~v~KaNvl~~tdglf~-~-------~~~ev~a~~yp~~~~~~~I~~~-~~ 249 (412)
..+|.+.+.+.++...+.-++ -+ ++-..|-=-|==.--.|+|= | ..++. . -. +|.+. -.
T Consensus 150 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGe~G~~G~EE~~~I~PAI~~~-~--~~------gi~v~GP~ 220 (298)
T PF04166_consen 150 KLITKERILEKIRLLHKSLKRDFGIENPRIAVAGLNPHAGEGGLFGREEIEIIIPAIEEA-R--AE------GIDVFGPY 220 (298)
T ss_dssp HH--HHHHHHHHHHHHHHHHHTTT-SS-EEEEE-SSGGGGTTTTTBSHHHHTHHHHHHHH-H--HT------THEEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCcHhHHHHHHHHHHHH-H--hC------CCceECCC
Confidence 457888888888877665554 22 22222322332221234442 2 22222 1 12 56555 34
Q ss_pred eHHHHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccCCCcccC
Q 015139 250 LIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTN 328 (412)
Q Consensus 250 ~VDa~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk~i~AN 328 (412)
--|++-.+-. -++| ++|+ | -=|.+-.=.=-+++--+.|+--.--.----|.||||- ||||||+ ||
T Consensus 221 paDt~F~~~~--~~~fD~vva--M----YHDQGlip~K~l~f~~gVnvTlGLP~iRTS~DHGTAf-----DIAGkg~-A~ 286 (298)
T PF04166_consen 221 PADTVFGKAN--RGKFDAVVA--M----YHDQGLIPFKLLGFDEGVNVTLGLPIIRTSPDHGTAF-----DIAGKGI-AD 286 (298)
T ss_dssp -HHHHTSHHH--HTT-SEEEE--S----SHHHHHHHHHHHCTTTSEEEEESSSSEEEEESS-S-C-----CGTTTTT-S-
T ss_pred ccHHhhhcch--hccCCEEEE--e----ecccCccceeecccccceEEecCCCeeeecCCCCchh-----hhhCCCC-CC
Confidence 4555544432 3445 4443 2 3455544444455555666542210123458999999 9999999 99
Q ss_pred hhhHHHHHHH
Q 015139 329 SIASIFAWSR 338 (412)
Q Consensus 329 P~a~IlS~am 338 (412)
|.+|+-|.-+
T Consensus 287 ~~s~~~Ai~~ 296 (298)
T PF04166_consen 287 PSSMIEAIKL 296 (298)
T ss_dssp THHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9999988654
No 35
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=93.00 E-value=0.069 Score=54.08 Aligned_cols=142 Identities=13% Similarity=0.045 Sum_probs=77.3
Q ss_pred eeeCHHHHHHHHHHHHHHHHcCC--C-CE-EEEeCCCccccccHHH-HHHHHHHHHhhcCCccccCCeEEc-eeeHHHHH
Q 015139 182 MYNTDESIRAFAEASMNTAYQKK--W-PL-YLSTKNTILKKYDGRF-KDIFQEVYEANWKSKFEAAGIWYE-HRLIDDMV 255 (412)
Q Consensus 182 ~~~Tr~~~eRiar~AFe~A~~r~--~-~V-t~v~KaNvl~~tdglf-~~~~~ev~a~~yp~~~~~~~I~~~-~~~VDa~~ 255 (412)
..+|.+.+.+.++.+.+.-++-+ + |+ .+.-..+.- -.|+| +|..+.+ .---. +.++.++.++ -.--|++-
T Consensus 176 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAG--E~G~~G~EE~~iI-~PAi~-~~~~~G~~v~GP~paDt~F 251 (326)
T PRK03371 176 DTLNTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAG--ENGLFGDEEIRIV-TPAIE-AMRAKGMDVYGPCPPDTVF 251 (326)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCC--CCCCCcHHHHHHH-HHHHH-HHHHCCCcccCCCCchhhc
Confidence 45788888888888777555322 2 32 233323332 34666 4444333 10000 0000133322 33344443
Q ss_pred HHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccCCCcccChhhHHH
Q 015139 256 AYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIF 334 (412)
Q Consensus 256 ~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk~i~ANP~a~Il 334 (412)
.+-.+ ++| ++|| | -=|.+-.=.=.+++-.+.|+--.--.----|-||||- ||||||+ |||.+|+-
T Consensus 252 ~~~~~--~~~D~vva--M----YHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAf-----DIAGkG~-A~~~S~~~ 317 (326)
T PRK03371 252 LQAYE--GQYDMVVA--M----YHDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAF-----DIAWTGK-AKSESMAV 317 (326)
T ss_pred ccccc--cCCCEEEE--c----cccccchhheecccccceEEecCCCeeEecCCCCchh-----hhhcCCc-CCHHHHHH
Confidence 33333 456 4444 2 3456555556666667777653210122357899999 9999999 99999998
Q ss_pred HHHHHHH
Q 015139 335 AWSRGLA 341 (412)
Q Consensus 335 S~ammL~ 341 (412)
|.-+..+
T Consensus 318 Ai~lA~~ 324 (326)
T PRK03371 318 SIKLAMQ 324 (326)
T ss_pred HHHHHHH
Confidence 8666544
No 36
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=92.97 E-value=0.068 Score=54.27 Aligned_cols=144 Identities=15% Similarity=0.046 Sum_probs=77.0
Q ss_pred eeeCHHHHHHHHHHHHHHHHcCC--C-CEEEEeCCCccccccHHH-HHHHHHHHHhhcCCccccCCeEEc-eeeHHHHHH
Q 015139 182 MYNTDESIRAFAEASMNTAYQKK--W-PLYLSTKNTILKKYDGRF-KDIFQEVYEANWKSKFEAAGIWYE-HRLIDDMVA 256 (412)
Q Consensus 182 ~~~Tr~~~eRiar~AFe~A~~r~--~-~Vt~v~KaNvl~~tdglf-~~~~~ev~a~~yp~~~~~~~I~~~-~~~VDa~~~ 256 (412)
..+|.+.+.+.++.+-+.-++.+ + |+- |-==|==..-.|+| +|..+.+ ..--. +.++.++.+. -.--|.+-.
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIa-V~gLNPHAGE~G~~G~EE~~iI-~PAI~-~~~~~G~~v~GP~paDt~F~ 253 (332)
T PRK00232 177 DAITPERLEEVIRILHADLRRKGIAEPRIA-VCGLNPHAGEGGHFGREEIDII-IPALE-ELRAEGINLVGPLPADTLFQ 253 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCcEE-EEeeCCCCCCCCCCCHHHHHHH-HHHHH-HHHhCCCCcCCCCCchhhcc
Confidence 55788999988888877555333 2 322 21122222124555 3332222 10000 0000033322 334455444
Q ss_pred HHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccCCCcccChhhHHHH
Q 015139 257 YALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFA 335 (412)
Q Consensus 257 ~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk~i~ANP~a~IlS 335 (412)
+-.+ +.| ++|| | -=|.+-.=.=-+++-.+.|+--.--.----|-||||- ||||||+ |||.+|+-|
T Consensus 254 ~~~~--~~~D~vva--M----YHDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAf-----DIAGkg~-A~~~S~~~A 319 (332)
T PRK00232 254 PAYL--GDADAVLA--M----YHDQGLPVLKYLGFGRGVNITLGLPFIRTSVDHGTAL-----DLAGKGI-ADVGSFITA 319 (332)
T ss_pred cccc--CCCCEEEE--C----cccccchhheecccCcceEEecCCCeeEeCCCCcchh-----hhhcCCC-CCHHHHHHH
Confidence 3333 356 4444 2 3455555555566666777653220122357899999 9999999 999999999
Q ss_pred HHHHHHh
Q 015139 336 WSRGLAH 342 (412)
Q Consensus 336 ~ammL~~ 342 (412)
.-+..+.
T Consensus 320 i~lA~~~ 326 (332)
T PRK00232 320 LNLAIRM 326 (332)
T ss_pred HHHHHHH
Confidence 7776655
No 37
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=92.78 E-value=0.075 Score=53.96 Aligned_cols=143 Identities=15% Similarity=0.092 Sum_probs=80.2
Q ss_pred eeeCHHHHHHHHHHHHHHHHcCC---CC-EEEEeCCCccccccHHH-HHHHHHHHHhhcCCccccCCeEEc-eeeHHHHH
Q 015139 182 MYNTDESIRAFAEASMNTAYQKK---WP-LYLSTKNTILKKYDGRF-KDIFQEVYEANWKSKFEAAGIWYE-HRLIDDMV 255 (412)
Q Consensus 182 ~~~Tr~~~eRiar~AFe~A~~r~---~~-Vt~v~KaNvl~~tdglf-~~~~~ev~a~~yp~~~~~~~I~~~-~~~VDa~~ 255 (412)
..+|.+.+.+.++.+.+.-++-+ -| ..+.-..+.- -.|+| +|..+-+ ..--. +.++.++.++ -.--|.+-
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI-~PAI~-~~~~~g~~v~GP~paDt~F 252 (332)
T PRK03743 177 DYVTKERVLDYIQRCTKALEKLGIKNPKIAVAGLNPHSG--EHGLFGDEEVDEI-IPAVE-AAQEMGINVEGPVPADSVF 252 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCC--CCCCCcHHHHHHH-HHHHH-HHHHCCCcccCCCCchhhc
Confidence 45789999999998888666333 23 2233333332 24565 3333222 10000 0000133332 34445554
Q ss_pred HHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccCCCcccChhhHHH
Q 015139 256 AYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIF 334 (412)
Q Consensus 256 ~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk~i~ANP~a~Il 334 (412)
.+-.+ +.| ++|| | .=|.+-.=.=.+++-.+.|+--.--.----|-||||- ||||||+ |||.+|+-
T Consensus 253 ~~~~~--~~~D~vva--M----YHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAf-----DIAGkg~-A~~~S~~~ 318 (332)
T PRK03743 253 HLALQ--GRYDAVLS--L----YHDQGHIATKTLDFERTIAITNGLPFLRTSVDHGTAF-----DIAGTGK-ASSVSMEE 318 (332)
T ss_pred ccccc--cCCCEEEE--c----ccccCChhheecccCCceEEecCCCeeEeCCCCcchh-----hhhcCCC-CCHHHHHH
Confidence 44333 346 4444 2 3456555556666667777653210122357899999 9999999 99999999
Q ss_pred HHHHHHHh
Q 015139 335 AWSRGLAH 342 (412)
Q Consensus 335 S~ammL~~ 342 (412)
|.-+..+.
T Consensus 319 Ai~lA~~~ 326 (332)
T PRK03743 319 AILLAAKY 326 (332)
T ss_pred HHHHHHHH
Confidence 98777665
No 38
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=92.57 E-value=0.083 Score=53.56 Aligned_cols=143 Identities=12% Similarity=-0.016 Sum_probs=80.4
Q ss_pred eeeCHHHHHHHHHHHHHHHHcC-C---CCE-EEEeCCCccccccHHH-HHHHHHHHHhhcCCccccCCeEEc-eeeHHHH
Q 015139 182 MYNTDESIRAFAEASMNTAYQK-K---WPL-YLSTKNTILKKYDGRF-KDIFQEVYEANWKSKFEAAGIWYE-HRLIDDM 254 (412)
Q Consensus 182 ~~~Tr~~~eRiar~AFe~A~~r-~---~~V-t~v~KaNvl~~tdglf-~~~~~ev~a~~yp~~~~~~~I~~~-~~~VDa~ 254 (412)
..+|.+.+.+.++.+.+.-++. + -|+ .+.-..+.- -.|+| +|..+.+ .---. +.++.++.+. -.--|++
T Consensus 172 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI-~PAi~-~~~~~Gi~v~GP~paDt~ 247 (329)
T PRK01909 172 AALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAG--ENGYLGREEIDVI-EPALA-RARAAGIDARGPYPADTL 247 (329)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCC--CCCCCcHHHHHHH-HHHHH-HHHHCCCCccCCCCchhh
Confidence 4578999999999988866632 2 232 233222222 24666 4443322 10000 0000133322 3445555
Q ss_pred HHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccCCCcccChhhHH
Q 015139 255 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASI 333 (412)
Q Consensus 255 ~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk~i~ANP~a~I 333 (412)
-.+..+ +.| ++|| | -=|.+-.-.=.+++--+.|+--.--.----|-||||- ||||||+ |||.+|+
T Consensus 248 F~~~~~--~~~D~vva--M----YHDQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAf-----DIAGkg~-A~~~S~~ 313 (329)
T PRK01909 248 FQPRYL--EDADCVLA--M----FHDQGLPVLKYATFGEGINVTLGLPIIRTSVDHGTAL-----DLAGTGR-ADPGSMI 313 (329)
T ss_pred cccccc--cCCCEEEE--c----cccccchhheecccCcceEEecCCCeeEeCCCCcchh-----hhhcCCC-CCHHHHH
Confidence 444433 346 4444 2 3456555556667767777653210122357899999 9999999 9999999
Q ss_pred HHHHHHHHh
Q 015139 334 FAWSRGLAH 342 (412)
Q Consensus 334 lS~ammL~~ 342 (412)
-|.-+..+.
T Consensus 314 ~Ai~lA~~~ 322 (329)
T PRK01909 314 AAIDTAVTM 322 (329)
T ss_pred HHHHHHHHH
Confidence 997766555
No 39
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=92.53 E-value=0.086 Score=52.97 Aligned_cols=136 Identities=11% Similarity=-0.005 Sum_probs=74.2
Q ss_pred eeeCHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccccHHH-HH------HHHHHHHhhcCCccccCCeEEc--eeeHH
Q 015139 182 MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRF-KD------IFQEVYEANWKSKFEAAGIWYE--HRLID 252 (412)
Q Consensus 182 ~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf-~~------~~~ev~a~~yp~~~~~~~I~~~--~~~VD 252 (412)
..+|.+.+.+-++...+.-+ ..|-..+.-..+.- -.|+| +| ..++. ++. . ++.+. -.--|
T Consensus 157 ~~it~~~i~~~i~~~~~~l~-~PrIaV~gLNPHAG--E~G~~G~EE~iI~PAi~~~-~~~-~------g~~~~~GP~paD 225 (307)
T PRK03946 157 QLIKVKKLVKFLLDFYKSTK-FKKIGVLGLNPHAG--DNGVIGGEEEEIKKAIKKA-NQF-L------GFEIFFGPLVPD 225 (307)
T ss_pred HHhCHHHHHHHHHHHHHHhc-CCCEEEEeeCCCCC--CCCCCCcchHHHHHHHHHH-HHh-c------CCCcccCCcCch
Confidence 45788888887777665433 22212222222221 23444 22 22332 211 1 33333 45555
Q ss_pred HHHHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccCCC-cccChh
Q 015139 253 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGE-TSTNSI 330 (412)
Q Consensus 253 a~~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk~-i~ANP~ 330 (412)
++-.+-.+ +.| ++|| | -=|.+-.=.=.+++--+.|+--.--.----|-||||- |||||| + |||.
T Consensus 226 t~F~~~~~--~~~D~vla--M----YHDQGlip~K~l~F~~gVnvTlGLP~iRTSpDHGTAf-----DIAGkg~~-A~~~ 291 (307)
T PRK03946 226 SAFTPNKR--KKFNYYVA--M----YHDQGLAPLKALYFDESINVSLNLPILRTSVDHGTAF-----DIAYKNAK-ANTK 291 (307)
T ss_pred hhcccccc--cCCCEEEE--C----ccccCchhheeeccCcceEEecCCCEeEecCCCCchh-----hhcCCCCc-CCHH
Confidence 55444333 467 5554 2 3355555455566666677542210122357899999 999999 9 9999
Q ss_pred hHHHHHHHHHHh
Q 015139 331 ASIFAWSRGLAH 342 (412)
Q Consensus 331 a~IlS~ammL~~ 342 (412)
+|+-|.-+..+.
T Consensus 292 S~~~Ai~lA~~~ 303 (307)
T PRK03946 292 SYLNAIKYAINL 303 (307)
T ss_pred HHHHHHHHHHHH
Confidence 999987666554
No 40
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=92.51 E-value=0.086 Score=53.63 Aligned_cols=143 Identities=18% Similarity=0.083 Sum_probs=77.4
Q ss_pred eeeCHHHHHHHHHHHHHHHHcC-C---CCEE-EEeCCCccccccHHH-HHHHHHHHHhhcCCccccCCeEEc-eeeHHHH
Q 015139 182 MYNTDESIRAFAEASMNTAYQK-K---WPLY-LSTKNTILKKYDGRF-KDIFQEVYEANWKSKFEAAGIWYE-HRLIDDM 254 (412)
Q Consensus 182 ~~~Tr~~~eRiar~AFe~A~~r-~---~~Vt-~v~KaNvl~~tdglf-~~~~~ev~a~~yp~~~~~~~I~~~-~~~VDa~ 254 (412)
..+|.+.+.+.++.+.+.-++. + -|+- +.-..+.- -.|+| +|..+-+ ..--. +..+.++.+. -.--|.+
T Consensus 181 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI-~PAI~-~~~~~Gi~v~GP~paDt~ 256 (336)
T PRK05312 181 AALTPELIVATARITAADLRRRFGIASPRLAVAGLNPHAG--EGGALGREDIDII-APAIE-QLRAEGIDARGPLPADTM 256 (336)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeeCCCCC--CCCCCcHHHHHHH-HHHHH-HHHHCCCCccCCCCchhh
Confidence 4578999999999888866632 2 1322 22222222 24565 4333222 10000 0000023221 3334444
Q ss_pred HHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccCCCcccChhhHH
Q 015139 255 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASI 333 (412)
Q Consensus 255 ~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk~i~ANP~a~I 333 (412)
-.+-.+ +.| ++|+ | -=|.+-.-.=.+++-.+.|+--.--.----|-||||- ||||||+ |||.+|+
T Consensus 257 F~~~~~--~~~D~vva--M----YHDQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAf-----DIAGkg~-A~~~S~~ 322 (336)
T PRK05312 257 FHAAAR--ATYDAAIC--M----YHDQALIPIKTLDFDGGVNVTLGLPFIRTSPDHGTAF-----DIAGKGI-ARPDSLI 322 (336)
T ss_pred cccccc--cCCCEEEE--c----ccccCChhheecccCcceEEecCCCeeEeCCCCcchh-----hhhcCCC-CCHHHHH
Confidence 333222 356 4443 2 3455555555566666777653210122357899999 9999999 9999999
Q ss_pred HHHHHHHHh
Q 015139 334 FAWSRGLAH 342 (412)
Q Consensus 334 lS~ammL~~ 342 (412)
-|.-+..+.
T Consensus 323 ~Ai~lA~~~ 331 (336)
T PRK05312 323 AALRLAAQM 331 (336)
T ss_pred HHHHHHHHH
Confidence 997776655
No 41
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=92.39 E-value=0.091 Score=53.57 Aligned_cols=140 Identities=10% Similarity=-0.061 Sum_probs=80.1
Q ss_pred eeeCHHHHHHHHHHHHHHHHcC-C--C-CEE-EEeCCCccccccHHH-HHH-------HHHHHHhhcCCccccCCeEEc-
Q 015139 182 MYNTDESIRAFAEASMNTAYQK-K--W-PLY-LSTKNTILKKYDGRF-KDI-------FQEVYEANWKSKFEAAGIWYE- 247 (412)
Q Consensus 182 ~~~Tr~~~eRiar~AFe~A~~r-~--~-~Vt-~v~KaNvl~~tdglf-~~~-------~~ev~a~~yp~~~~~~~I~~~- 247 (412)
..+|.+.+.+-++.+.+.-++. + + |+- +.-..+.- -.|+| +|. +++. +++.+ ++.+.
T Consensus 179 ~~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI~PAIe~~-r~~g~------g~~v~G 249 (345)
T PRK02746 179 KTLTPELITSKLDLLIDFLQRDFGIEKPRIAIAGLNPHAG--EQGQLGTEEKDWLIPWLESW-RQKNP------DIQLLG 249 (345)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEEeeCCCCC--CCCCCcHHHHHHHHHHHHHH-HhcCC------CceeeC
Confidence 4578888888887777655422 2 2 332 22222222 24554 333 2333 23222 34433
Q ss_pred eeeHHHHHHHHHhC------CCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccc
Q 015139 248 HRLIDDMVAYALKS------EGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 320 (412)
Q Consensus 248 ~~~VDa~~~~lv~~------P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~di 320 (412)
-.--|.+-.+-.+. .+.| ++|| | -=|.+-.=.=-+++-.+.|+--.--.----|-||||- ||
T Consensus 250 P~paDt~F~~~~~~~~~~~~~~~~D~vva--M----YHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAf-----DI 318 (345)
T PRK02746 250 PIPPDTCWVSPAQAWYGKGVAEAPDGYLA--L----YHDQGLIPVKLMAFDRAVNTTIGLPFIRTSPDHGTAF-----DI 318 (345)
T ss_pred CCCchhhccccccccccccccCCCCEEEE--C----cccCCChhheeeccCcceEEecCCCeeEeCCCCcchh-----hh
Confidence 44456665554442 2457 5554 2 3456555556666667777653220122357899999 99
Q ss_pred cCCCcccChhhHHHHHHHHHHh
Q 015139 321 KGGETSTNSIASIFAWSRGLAH 342 (412)
Q Consensus 321 aGk~i~ANP~a~IlS~ammL~~ 342 (412)
||||+ |||.+|+-|.-+..+.
T Consensus 319 AGkg~-A~~~S~~~Ai~lA~~l 339 (345)
T PRK02746 319 AGKGI-ARPQSMKAAIKLAWEL 339 (345)
T ss_pred hcCCC-CCHHHHHHHHHHHHHH
Confidence 99999 9999999997776554
No 42
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=92.20 E-value=0.1 Score=52.82 Aligned_cols=142 Identities=15% Similarity=0.022 Sum_probs=75.2
Q ss_pred eeeCHHHHHHHHHHHHHHHHcC-C---CCE-EEEeCCCccccccHHH-HHHHHHHHHhhcCCccccCCeEEc-eeeHHHH
Q 015139 182 MYNTDESIRAFAEASMNTAYQK-K---WPL-YLSTKNTILKKYDGRF-KDIFQEVYEANWKSKFEAAGIWYE-HRLIDDM 254 (412)
Q Consensus 182 ~~~Tr~~~eRiar~AFe~A~~r-~---~~V-t~v~KaNvl~~tdglf-~~~~~ev~a~~yp~~~~~~~I~~~-~~~VDa~ 254 (412)
..+|.+.+.+-++.+.+.-++. + .|+ .+.-..+.- -.|+| +|..+-+ ..--. +.++.++.++ -.--|++
T Consensus 169 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAG--E~G~~G~EE~~iI-~PAI~-~~~~~G~~v~GP~paDt~ 244 (320)
T TIGR00557 169 AALTPELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAG--EGGHLGREEIDII-IPALE-ALRAEGIDLIGPLPADTL 244 (320)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCC--CCCCCcHHHHHHH-HHHHH-HHHHCCCcccCCCCchhh
Confidence 4478999999888888766632 2 243 233322222 24555 3332222 10000 0000023222 3333444
Q ss_pred HHHHHhCCCcc-EEEecCcccccccchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccCCCcccChhhHH
Q 015139 255 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASI 333 (412)
Q Consensus 255 ~~~lv~~P~~F-Vivt~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk~i~ANP~a~I 333 (412)
-.+-.+ +.| ++|| | -=|.+-.=.=.+++--+.|+--.--.----|-||||- ||||||+ |||.+|+
T Consensus 245 F~~~~~--~~~D~vva--M----YHDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAf-----DIAGkg~-A~~~S~~ 310 (320)
T TIGR00557 245 FHPAAL--AKYDAVLA--M----YHDQGLIPLKYLGFDEGVNVTLGLPFIRTSPDHGTAF-----DIAGKGK-ADPGSLI 310 (320)
T ss_pred cccccc--cCCCEEEE--C----cccccchhheecccCcceEEecCCCeeEeCCCCcchh-----hhhcCCC-CCHHHHH
Confidence 333222 456 4444 2 3455555555566666777653210122357899999 9999999 9999998
Q ss_pred HHHHHHHH
Q 015139 334 FAWSRGLA 341 (412)
Q Consensus 334 lS~ammL~ 341 (412)
-|.-+..+
T Consensus 311 ~Ai~~A~~ 318 (320)
T TIGR00557 311 AAIKLAIE 318 (320)
T ss_pred HHHHHHHH
Confidence 88665543
No 43
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=92.18 E-value=0.096 Score=52.78 Aligned_cols=59 Identities=20% Similarity=0.062 Sum_probs=41.9
Q ss_pred cchhhhhcCCcccccceeeCCCCceEEEccccccccccccccccCCCcccChhhHHHHHHHHHHh
Q 015139 278 SDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAH 342 (412)
Q Consensus 278 SDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk~i~ANP~a~IlS~ammL~~ 342 (412)
=|++-.-.==+|+--|.|+.-+--+----|-||||- ||||||| |||.+++-+..+.-+.
T Consensus 267 HDQgliplK~l~Fd~~VNvtlGLPfiRTS~DHGTAf-----DiAgkGi-A~~~S~~~Ai~lA~~l 325 (332)
T COG1995 267 HDQGLIPLKYLGFDRGVNVTLGLPFIRTSVDHGTAF-----DIAGKGI-ADPGSLIAAIKLAAKL 325 (332)
T ss_pred ccccchhhhhhccccceEEecCCCeeeecCCccchh-----hhhcCCc-CCchHHHHHHHHHHHH
Confidence 355555555567777888764321223357899999 9999999 9999999887665554
No 44
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=91.13 E-value=0.53 Score=49.85 Aligned_cols=177 Identities=15% Similarity=0.141 Sum_probs=107.1
Q ss_pred eCHHHHHHHHHHHHHHHHcCCCCEEE-EeCCCccccccHHHHHHHHHHHHhhcCCccccCCeEEcee-eHHHHH--HHHH
Q 015139 184 NTDESIRAFAEASMNTAYQKKWPLYL-STKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR-LIDDMV--AYAL 259 (412)
Q Consensus 184 ~Tr~~~eRiar~AFe~A~~r~~~Vt~-v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~~~~~-~VDa~~--~~lv 259 (412)
....-+.-+++.|.+.||..+-.+.+ .|-. +..+.-...-++.. -+++- ..+..+.-+ .+.+|- +..+
T Consensus 463 ~kdapi~dWVkLaV~RarlS~~pavFWLDp~---Rahd~~li~kV~~y-Lkdhd----t~GldI~Ilsp~ea~~~sl~rl 534 (744)
T COG2838 463 VKDAPIRDWVKLAVTRARLSGMPAVFWLDPY---RAHDKELIKKVEAY-LKDHD----TNGLDIQILSPVEAMRYSLERL 534 (744)
T ss_pred cccchHHHHHHHHHHHHhhcCCceEEEeCcC---ccchHHHHHHHHHH-hhhcC----CCCcceEEecHHHHHHHHHHHH
Confidence 34567888999999999988765433 3321 11233333333332 12221 113444433 344443 3334
Q ss_pred hCCCccEEEecCcccccccchhhhhcCC--cccccceeeCCCCceEEEcc-ccccccccccccccCCCcccChhhHHHHH
Q 015139 260 KSEGGYVWACKNYDGDVQSDFLAQGFGS--LGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQKGGETSTNSIASIFAW 336 (412)
Q Consensus 260 ~~P~~FVivt~NlfGDILSDlaa~l~Gg--lGlapSanig~~~~~a~FEp-~HGSAp~~~~~diaGk~i~ANP~a~IlS~ 336 (412)
++-..-+-||.|..-|.|+||.-.|-=| --|..-.-+=..| +|||. .-||||+|-.+=.--.-.-=+.+|-+|+.
T Consensus 535 ~~G~DtIsvTGNvLRDYlTDLFPIlELGTSAKMLSiVPlmaGG--gmfETGAGGSAPKhVqQ~~eENhLRWDSLGEFLAL 612 (744)
T COG2838 535 RRGEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMAGG--GMFETGAGGSAPKHVQQLVEENHLRWDSLGEFLAL 612 (744)
T ss_pred HcCCceeEecchHHHHHHhhhhhHhhcccccchheeeeeccCC--ceeecCCCCCCcHHHHHHHHhcccchhhHHHHHHH
Confidence 5555558899999999999998765311 1121111111233 79999 78999976533221111115788999999
Q ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHHcC
Q 015139 337 SRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG 370 (412)
Q Consensus 337 ammL~~lg~l~~~~~l~~~A~~i~~Av~~~l~~G 370 (412)
+.-|+|+|..-+|....-.|+.|..|..+.|...
T Consensus 613 a~sle~~~~k~gn~kAkvLa~~LD~AtgklLdn~ 646 (744)
T COG2838 613 AASLEHLGNKTGNAKAKVLAKALDAATGKLLDNN 646 (744)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999866555555667889999999988764
No 45
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=76.57 E-value=1.7 Score=43.66 Aligned_cols=40 Identities=13% Similarity=0.009 Sum_probs=29.3
Q ss_pred cHHHHhhcCceEEeeeeeeccCCCCCCCCCCceeecccccCCccCCccEEEec
Q 015139 98 NGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQG 150 (412)
Q Consensus 98 ~~~LRk~ldlyan~RPi~~~~~p~l~~~~~~~l~i~Re~~~~~y~~id~vivr 150 (412)
|+...+.+..|-.. .-..+++++||||||.|.+++..++.
T Consensus 127 NVRPc~SieG~Kt~-------------Y~~vD~V~IRENTEgeYsgiEh~vvp 166 (365)
T KOG0785|consen 127 NVRPCKSIEGYKTP-------------YDDVDLVIIRENTEGEYSGIEHQVVP 166 (365)
T ss_pred cceecccccCCcCC-------------CCCceEEEEecCCccccccceeeccc
Confidence 55666777755321 11488999999999999999987664
No 46
>PRK06451 isocitrate dehydrogenase; Validated
Probab=72.72 E-value=2.4 Score=44.46 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=20.9
Q ss_pred CCceeecccccCCccCCccEEEecC
Q 015139 127 TKPICIGRHAFGDQYRATDTVIQGP 151 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id~vivre 151 (412)
..|++|+||||||.|.++++.+..|
T Consensus 141 ~iD~vIvREnTeG~Y~g~~~~~~~~ 165 (412)
T PRK06451 141 KIDLIIFRENTDDLYRGIEYPYDSE 165 (412)
T ss_pred CccEEEEEeccCCeeeccccccccc
Confidence 5899999999999999998654443
No 47
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=71.57 E-value=2.7 Score=44.13 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=18.7
Q ss_pred CCceeecccccCCccCCccEE
Q 015139 127 TKPICIGRHAFGDQYRATDTV 147 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id~v 147 (412)
+.|++|+||||||.|.++++.
T Consensus 146 ~vDivIvREnteG~Y~g~~~~ 166 (416)
T TIGR00183 146 KVDMVIFRENTEDIYAGIEWA 166 (416)
T ss_pred CCCEEEEEeCCCCcccccccc
Confidence 588999999999999998753
No 48
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=69.05 E-value=3.3 Score=42.29 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=18.5
Q ss_pred CCceeecccccCCccCCccEE
Q 015139 127 TKPICIGRHAFGDQYRATDTV 147 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id~v 147 (412)
..|++|+||||||.|.+....
T Consensus 119 ~~D~viVREnTeG~Y~G~~~~ 139 (348)
T COG0473 119 GVDIVIVRENTEGLYFGEEGR 139 (348)
T ss_pred CccEEEEeeCCCccccCCCcc
Confidence 389999999999999997763
No 49
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=68.52 E-value=3.9 Score=41.70 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=18.7
Q ss_pred CceeecccccCCccCCccEEE
Q 015139 128 KPICIGRHAFGDQYRATDTVI 148 (412)
Q Consensus 128 ~~l~i~Re~~~~~y~~id~vi 148 (412)
.|++|+||||||.|.+.++.+
T Consensus 111 iD~vivREnteG~Y~g~~~~~ 131 (333)
T TIGR00175 111 VDIVIIRENTEGEYSGLEHES 131 (333)
T ss_pred cCEEEEEEeCCCcccceeEec
Confidence 789999999999999987653
No 50
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=64.83 E-value=4.2 Score=41.42 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=18.4
Q ss_pred CCceeecccccCCccCCccEE
Q 015139 127 TKPICIGRHAFGDQYRATDTV 147 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id~v 147 (412)
+.|++|+||||||.|.+++..
T Consensus 105 ~iD~vivREnteG~Y~g~~~~ 125 (330)
T PRK14025 105 DIDYVIVRENTEGLYKGIEAE 125 (330)
T ss_pred CcCEEEEEECCCceecCcccc
Confidence 378999999999999998754
No 51
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=64.72 E-value=4.9 Score=41.41 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=18.5
Q ss_pred CCceeecccccCCccCCccEE
Q 015139 127 TKPICIGRHAFGDQYRATDTV 147 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id~v 147 (412)
..|++|+||||||.|.+.+..
T Consensus 133 ~iD~viVREnteG~Y~g~~~~ 153 (360)
T PLN00123 133 NVDIVVIRENTEGEYSGLEHE 153 (360)
T ss_pred CCCEEEEEeCCCceeccceee
Confidence 388999999999999998754
No 52
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=63.26 E-value=5.4 Score=41.33 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=18.8
Q ss_pred CCceeecccccCCccCCccEEE
Q 015139 127 TKPICIGRHAFGDQYRATDTVI 148 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id~vi 148 (412)
+.+++|+||||||.|.+.++.+
T Consensus 149 ~iD~vIVREnteG~Y~g~~~~~ 170 (372)
T PLN00118 149 DVDLVTIRENTEGEYSGLEHQV 170 (372)
T ss_pred CceEEEEEecCCCcccceeeec
Confidence 3889999999999999987643
No 53
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=62.42 E-value=4.8 Score=40.85 Aligned_cols=20 Identities=25% Similarity=0.209 Sum_probs=18.1
Q ss_pred CCceeecccccCCccCCccE
Q 015139 127 TKPICIGRHAFGDQYRATDT 146 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id~ 146 (412)
..|++|+||||||.|.+.++
T Consensus 107 ~iD~vivREnteG~Y~g~~~ 126 (322)
T TIGR02088 107 GKDIVIVRENTEGLYAGFEF 126 (322)
T ss_pred CCCEEEEEeCcCCeeecccc
Confidence 48999999999999999875
No 54
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=62.38 E-value=5.4 Score=40.91 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=17.3
Q ss_pred CCceeecccccCCccCCcc
Q 015139 127 TKPICIGRHAFGDQYRATD 145 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id 145 (412)
+.|++|+||||||.|.+++
T Consensus 121 ~iD~vivREnteG~Y~g~~ 139 (344)
T PRK03437 121 DIDFVVVREGTEGPYTGNG 139 (344)
T ss_pred CCCEEEEEECCCccccCCc
Confidence 4899999999999999975
No 55
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=62.27 E-value=5 Score=40.95 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=17.8
Q ss_pred CCceeecccccCCccCCccE
Q 015139 127 TKPICIGRHAFGDQYRATDT 146 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id~ 146 (412)
..|++|+||||||.|.+.+.
T Consensus 110 ~iD~vivREnteG~Y~g~~~ 129 (334)
T PRK08997 110 NIDIITVRENTEGMYSGEGQ 129 (334)
T ss_pred CcCEEEEEeccCceecCccc
Confidence 38899999999999999864
No 56
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=61.36 E-value=5.8 Score=41.59 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=18.1
Q ss_pred CCceeecccccCCccCCccE
Q 015139 127 TKPICIGRHAFGDQYRATDT 146 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id~ 146 (412)
+.|++|+||||||.|.++++
T Consensus 139 ~iD~vIvREnteG~Y~g~~~ 158 (409)
T PRK07006 139 DTDMVIFRENSEDIYAGIEW 158 (409)
T ss_pred CCCEEEEEeccCCeeccccc
Confidence 48999999999999999874
No 57
>PRK08299 isocitrate dehydrogenase; Validated
Probab=59.83 E-value=5.7 Score=41.54 Aligned_cols=18 Identities=11% Similarity=-0.162 Sum_probs=15.8
Q ss_pred ccEEEecCCccceeeccC
Q 015139 144 TDTVIQGPGKLKLVFEGK 161 (412)
Q Consensus 144 id~vivrenteg~y~g~~ 161 (412)
.+++++||||||+|++.+
T Consensus 126 ~~ivivREnTEg~Y~gi~ 143 (402)
T PRK08299 126 KPIVIGRHAYGDQYRATD 143 (402)
T ss_pred CCEEEEecccCCccccee
Confidence 369999999999999864
No 58
>PRK08194 tartrate dehydrogenase; Provisional
Probab=57.27 E-value=7.4 Score=40.04 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=17.7
Q ss_pred CCceeecccccCCccCCccE
Q 015139 127 TKPICIGRHAFGDQYRATDT 146 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id~ 146 (412)
..|++|+||||||.|.+++.
T Consensus 123 ~iD~vivREnteG~Y~g~~~ 142 (352)
T PRK08194 123 DFDLLVVRENSEGEYSEVGG 142 (352)
T ss_pred CCCEEEEEeCCCccccCCCc
Confidence 48999999999999998753
No 59
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=57.00 E-value=5.9 Score=37.43 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=27.0
Q ss_pred CcccccceeeCCCCceEEEccccccccccccccccCCCc
Q 015139 287 SLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGET 325 (412)
Q Consensus 287 glGlapSanig~~~~~a~FEp~HGSAp~~~~~diaGk~i 325 (412)
-||..|-+|-|+.+ ..|-|+|||-- |+.|+=.
T Consensus 155 hLGCVp~~~AGd~g--g~~CPCHGSHY-----dasGRIr 186 (210)
T KOG1671|consen 155 HLGCVPIANAGDYG--GYYCPCHGSHY-----DASGRIR 186 (210)
T ss_pred cccccccccccccC--ceecccccccc-----cccCcee
Confidence 47889999999886 78999999987 8888644
No 60
>PRK09222 isocitrate dehydrogenase; Validated
Probab=56.65 E-value=8 Score=41.39 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=18.8
Q ss_pred CCceeecccccCCccCCccEE
Q 015139 127 TKPICIGRHAFGDQYRATDTV 147 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id~v 147 (412)
..|++|+||||||.|.+++..
T Consensus 114 ~iD~vIVRENtEG~Y~G~e~~ 134 (482)
T PRK09222 114 NLDVVIIRENEEDLYAGIEHR 134 (482)
T ss_pred CcCEEEEEeccCCeeccceee
Confidence 489999999999999998764
No 61
>PRK07362 isocitrate dehydrogenase; Validated
Probab=56.03 E-value=7.4 Score=41.36 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=18.2
Q ss_pred CCceeecccccCCccCCccE
Q 015139 127 TKPICIGRHAFGDQYRATDT 146 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id~ 146 (412)
+.|++|+||||||.|.++++
T Consensus 148 ~iD~vIvRENTEGlY~G~~~ 167 (474)
T PRK07362 148 KLDVIVYRENTEDIYMGIEW 167 (474)
T ss_pred CCCEEEEEECCCceeccccc
Confidence 58999999999999999875
No 62
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=54.98 E-value=8.2 Score=39.66 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=17.9
Q ss_pred CCceeecccccCCccCCccE
Q 015139 127 TKPICIGRHAFGDQYRATDT 146 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id~ 146 (412)
..|++|+||||||.|.+++.
T Consensus 124 ~iD~vivREntEG~Y~g~~~ 143 (349)
T TIGR00169 124 GVDFVVVRELTGGIYFGEPK 143 (349)
T ss_pred CceEEEEeeccCCeecCCCc
Confidence 48999999999999999864
No 63
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=53.36 E-value=10 Score=38.60 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=19.1
Q ss_pred ecccEEEECCC--CchHHHHHHHH
Q 015139 8 VANPIVEMDGD--EMTRVFWKSIK 29 (412)
Q Consensus 8 m~~~I~vi~GD--GiGpEv~~~~~ 29 (412)
|+++|++-.|| ||||||+-.++
T Consensus 1 ~~~~iaIT~GDpaGIGpEii~ka~ 24 (326)
T PRK03371 1 MTKIIAVTMGDPAGIGPEIIIKSL 24 (326)
T ss_pred CCCcEEEeCCCCcchHHHHHHHHh
Confidence 67889999999 99999987664
No 64
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=53.34 E-value=9.4 Score=40.74 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=18.7
Q ss_pred CCceeecccccCCccCCccEE
Q 015139 127 TKPICIGRHAFGDQYRATDTV 147 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id~v 147 (412)
..|++|+||||||.|.+++..
T Consensus 110 ~vDiVIVRENtEGlY~G~e~~ 130 (473)
T TIGR02924 110 NLNIVIVRENEEDLYTGIEYR 130 (473)
T ss_pred CcCEEEEEeccCceecCceee
Confidence 489999999999999998764
No 65
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=50.52 E-value=1.9e+02 Score=27.05 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=64.4
Q ss_pred eCHHHHHHHHHHHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCeEEce-eeHHHHHHHHHhCC
Q 015139 184 NTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEH-RLIDDMVAYALKSE 262 (412)
Q Consensus 184 ~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~~~~-~~VDa~~~~lv~~P 262 (412)
..-+..||++--|.+.|.+. ..|.++|---=|...+.-|++.++++...+-| =|.+-| ...|-...++=+.+
T Consensus 81 V~v~~le~i~~~al~rA~~~-aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp------liatlHrrsr~P~v~~ik~~~ 153 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEE-ADVIIIDEIGPMELKSKKFREAVEEVLKSGKP------LIATLHRRSRHPLVQRIKKLG 153 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhc-CCEEEEecccchhhccHHHHHHHHHHhcCCCc------EEEEEecccCChHHHHhhhcC
Confidence 45678999999999999876 67999999999998999999999999644444 344444 32333333443333
Q ss_pred CccEEEecCcccccccchhhhhc
Q 015139 263 GGYVWACKNYDGDVQSDFLAQGF 285 (412)
Q Consensus 263 ~~FVivt~NlfGDILSDlaa~l~ 285 (412)
.-+|++|+-=-+-|+..+.+.|-
T Consensus 154 ~v~v~lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 154 GVYVFLTPENRNRILNEILSVLK 176 (179)
T ss_pred CEEEEEccchhhHHHHHHHHHhc
Confidence 33354776444466666666554
No 66
>PLN02329 3-isopropylmalate dehydrogenase
Probab=49.67 E-value=8.2 Score=40.46 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=17.5
Q ss_pred CCceeecccccCCccCCcc
Q 015139 127 TKPICIGRHAFGDQYRATD 145 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id 145 (412)
..|++|+||||||.|.+++
T Consensus 171 ~iD~vIVREnTEG~Y~G~~ 189 (409)
T PLN02329 171 GVDMMIVRELTGGIYFGEP 189 (409)
T ss_pred CceEEEEEECCCCeecCCC
Confidence 4899999999999999986
No 67
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=49.21 E-value=8.5 Score=39.69 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=17.9
Q ss_pred CCceeecccccCCccCCccE
Q 015139 127 TKPICIGRHAFGDQYRATDT 146 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id~ 146 (412)
+.|++|+||||||.|.+++.
T Consensus 127 ~iD~vivREntEG~Y~g~~~ 146 (358)
T PRK00772 127 GLDILIVRELTGGIYFGEPR 146 (358)
T ss_pred CccEEEEecccCCeecCCcc
Confidence 48999999999999999864
No 68
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=47.36 E-value=9.4 Score=39.12 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.1
Q ss_pred CCceeecccccCCccCCccEEEec
Q 015139 127 TKPICIGRHAFGDQYRATDTVIQG 150 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id~vivr 150 (412)
..|++|+||||||.|.+.+.....
T Consensus 120 ~iDivivREnteG~Y~g~~~~~~~ 143 (348)
T PF00180_consen 120 GIDIVIVRENTEGLYSGIEHEIGD 143 (348)
T ss_dssp TSEEEEEEESSSGGGGEEEEEECS
T ss_pred cceEEEecccccCcccCCCCceee
Confidence 389999999999999999987654
No 69
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=45.98 E-value=11 Score=38.87 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=17.3
Q ss_pred CCceeecccccCCccCCcc
Q 015139 127 TKPICIGRHAFGDQYRATD 145 (412)
Q Consensus 127 ~~~l~i~Re~~~~~y~~id 145 (412)
..|++|+||||||.|.+.+
T Consensus 125 ~iD~vivREnteG~Y~G~~ 143 (352)
T TIGR02089 125 DFDFVVVRENSEGEYSGVG 143 (352)
T ss_pred CCCEEEEEecCCccccccc
Confidence 4899999999999999975
No 70
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=43.62 E-value=19 Score=36.79 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=18.6
Q ss_pred ecccEEEECCC--CchHHHHHHHH
Q 015139 8 VANPIVEMDGD--EMTRVFWKSIK 29 (412)
Q Consensus 8 m~~~I~vi~GD--GiGpEv~~~~~ 29 (412)
|+.+|++--|| ||||||+-.++
T Consensus 3 ~~p~iaIT~GDpaGIGpEIi~ka~ 26 (332)
T PRK00232 3 MKPRIAITPGDPAGIGPELVAKLL 26 (332)
T ss_pred CCCcEEEeCCCCcccHHHHHHHHH
Confidence 35789999999 99999987765
No 71
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=43.46 E-value=14 Score=38.20 Aligned_cols=20 Identities=15% Similarity=0.018 Sum_probs=17.6
Q ss_pred CCccEEEecCCccceeeccC
Q 015139 142 RATDTVIQGPGKLKLVFEGK 161 (412)
Q Consensus 142 ~~id~vivrenteg~y~g~~ 161 (412)
..+|+||.|||||+.|.|.+
T Consensus 135 e~~dmVIfRenteDiYagiE 154 (407)
T COG0538 135 EKVDMVIFRENTEDIYAGIE 154 (407)
T ss_pred ccCCeEEEeccccchhheee
Confidence 47999999999999998754
No 72
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=42.81 E-value=19 Score=36.81 Aligned_cols=22 Identities=14% Similarity=0.059 Sum_probs=18.3
Q ss_pred ecccEEEECCC--CchHHHHHHHH
Q 015139 8 VANPIVEMDGD--EMTRVFWKSIK 29 (412)
Q Consensus 8 m~~~I~vi~GD--GiGpEv~~~~~ 29 (412)
|..+|++-.|| ||||||+-.++
T Consensus 2 ~~p~iaIT~GDpaGIGpEii~ka~ 25 (336)
T PRK05312 2 MMRPLALSLGDPAGIGPEIALKAW 25 (336)
T ss_pred CCCeEEEeCCCCcchHHHHHHHHH
Confidence 34689999999 99999987664
No 73
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=38.30 E-value=29 Score=35.66 Aligned_cols=23 Identities=9% Similarity=-0.078 Sum_probs=19.3
Q ss_pred eecccEEEECCC--CchHHHHHHHH
Q 015139 7 KVANPIVEMDGD--EMTRVFWKSIK 29 (412)
Q Consensus 7 ~m~~~I~vi~GD--GiGpEv~~~~~ 29 (412)
.|..+|++-.|| ||||||+-.++
T Consensus 7 ~~~p~IaIT~GDpaGIGPEii~ka~ 31 (345)
T PRK02746 7 DPRPRLAITLGDPAGIGPEVILKAL 31 (345)
T ss_pred CCCCcEEEeCCCCcchHHHHHHHHH
Confidence 355689999999 99999987775
No 74
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=38.09 E-value=25 Score=35.94 Aligned_cols=20 Identities=15% Similarity=-0.082 Sum_probs=17.5
Q ss_pred ccEEEECCC--CchHHHHHHHH
Q 015139 10 NPIVEMDGD--EMTRVFWKSIK 29 (412)
Q Consensus 10 ~~I~vi~GD--GiGpEv~~~~~ 29 (412)
.+|++-.|| ||||||+-.++
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~ 25 (332)
T PRK03743 4 PIIAIPIGDPAGIGPEIVVKTL 25 (332)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 589999999 99999987764
No 75
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=37.75 E-value=30 Score=35.33 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=17.6
Q ss_pred ccEEEECCC--CchHHHHHHHH
Q 015139 10 NPIVEMDGD--EMTRVFWKSIK 29 (412)
Q Consensus 10 ~~I~vi~GD--GiGpEv~~~~~ 29 (412)
.+|++-.|| ||||||+-.++
T Consensus 6 p~iaIT~GDpaGIGpEii~kal 27 (329)
T PRK01909 6 LQIAITTGEPAGVGPELTVRAL 27 (329)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 579999999 99999987775
No 76
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=36.69 E-value=61 Score=34.04 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=35.6
Q ss_pred ccccchhhhhcCCcccccceeeCCCCceEEEcc-ccccccccccccccCCCcccChhhHHHHHHHHHHhhc
Q 015139 275 DVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRA 344 (412)
Q Consensus 275 DILSDlaa~l~GglGlapSanig~~~~~a~FEp-~HGSAp~~~~~diaGk~i~ANP~a~IlS~ammL~~lg 344 (412)
||++ ++=+|.|| +-=||.+.....-..|+| .|||.. | -||+|+--+ .-.|+.+.
T Consensus 247 DI~t-laK~LgGG--~PigA~la~~~~~~~~~~G~HgSTf--------G----GNpLacAv~-~a~l~~l~ 301 (404)
T COG4992 247 DILT-LAKALGGG--FPIGAMLATEEIASAFTPGDHGSTF--------G----GNPLACAVA-LAVLEVLL 301 (404)
T ss_pred CEEE-eeccccCC--ccceeeEEchhhhhcCCCCcccCCC--------C----cCHHHHHHH-HHHHHHHc
Confidence 5555 77888888 444666664321245898 899977 3 799999544 34566654
No 77
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=35.90 E-value=77 Score=25.07 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHHHHHhhcC
Q 015139 187 ESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWK 236 (412)
Q Consensus 187 ~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp 236 (412)
--..++++.|+++|++++.||.. ++.+-...+++= .+|.
T Consensus 38 Gia~~L~~~~l~~a~~~~~kv~p---------~C~y~~~~~~~h--pey~ 76 (78)
T PF14542_consen 38 GIAKKLVEAALDYARENGLKVVP---------TCSYVAKYFRRH--PEYQ 76 (78)
T ss_dssp THHHHHHHHHHHHHHHTT-EEEE---------TSHHHHHHHHH---GGGT
T ss_pred cHHHHHHHHHHHHHHHCCCEEEE---------ECHHHHHHHHhC--cccc
Confidence 34788999999999999988774 677777776542 4565
No 78
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=33.15 E-value=27 Score=35.76 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=20.0
Q ss_pred CceeecccccCCccCCccEEEec
Q 015139 128 KPICIGRHAFGDQYRATDTVIQG 150 (412)
Q Consensus 128 ~~l~i~Re~~~~~y~~id~vivr 150 (412)
.|++++||||||.|++.+.-.|.
T Consensus 150 vDiviIRENTEGEYs~LEHE~Vp 172 (375)
T KOG0784|consen 150 VDIVIIRENTEGEYSGLEHESVP 172 (375)
T ss_pred ccEEEEecCCcccccccccccCc
Confidence 78999999999999998876553
No 79
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=29.46 E-value=38 Score=34.29 Aligned_cols=19 Identities=16% Similarity=-0.036 Sum_probs=16.5
Q ss_pred ccEEEECCC--CchHHHHHHH
Q 015139 10 NPIVEMDGD--EMTRVFWKSI 28 (412)
Q Consensus 10 ~~I~vi~GD--GiGpEv~~~~ 28 (412)
.+|++-.|| ||||||+-.+
T Consensus 2 p~iaiT~GDpaGIGpEii~ka 22 (307)
T PRK03946 2 KKIAISIGDINGIGLEIALKS 22 (307)
T ss_pred CeEEEcCCCCcccHHHHHHHh
Confidence 578999999 9999998766
No 80
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=28.03 E-value=42 Score=34.22 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=14.8
Q ss_pred cccEEEECCC--CchHHHH
Q 015139 9 ANPIVEMDGD--EMTRVFW 25 (412)
Q Consensus 9 ~~~I~vi~GD--GiGpEv~ 25 (412)
+.+|++-.|| ||||||+
T Consensus 3 ~~~iAit~GDPaGIGPEi~ 21 (332)
T COG1995 3 KPRIAITMGDPAGIGPELV 21 (332)
T ss_pred CCceEecCCCcccCCHHHH
Confidence 3689999999 9999993
No 81
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=27.79 E-value=61 Score=26.22 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEe
Q 015139 186 DESIRAFAEASMNTAYQKKWPLYLST 211 (412)
Q Consensus 186 r~~~eRiar~AFe~A~~r~~~Vt~v~ 211 (412)
.+.+++.+++|+++|+..+.+|+++|
T Consensus 12 ~~~~~~al~~a~~la~~~~~~i~~l~ 37 (140)
T PF00582_consen 12 SEESRRALRFALELAKRSGAEITLLH 37 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 45678999999999999887766554
No 82
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=26.70 E-value=2.2e+02 Score=32.50 Aligned_cols=97 Identities=9% Similarity=0.031 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHHHHcCCC--CEEEE---eCCCccccccHHHHHHHHHHHHhhcCCccccCCeEEc-eeeHHHHHHHH
Q 015139 185 TDESIRAFAEASMNTAYQKKW--PLYLS---TKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE-HRLIDDMVAYA 258 (412)
Q Consensus 185 Tr~~~eRiar~AFe~A~~r~~--~Vt~v---~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~~~-~~~VDa~~~~l 258 (412)
|-+.--.|+..|-++|+.-+. ||-++ ++.|.--...-.-++.++-+ ++.+| ++.++ ++.+|++.-.-
T Consensus 602 taeqLa~IA~~aa~~ar~lGiePRVALLS~Sn~Gse~~k~~~~vreA~~ll-k~~~~------~l~~dGemq~D~Al~~~ 674 (752)
T PRK07232 602 TAEELAEIALMAAEEVRRFGIEPRVALLSHSNFGSSDSPSARKMREAVELL-RERAP------DLEVDGEMHGDAALNEE 674 (752)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeccccCCCCCCcHHHHHHHHHHH-HhhCC------CcEEEEechHHHhCCHH
Confidence 567778888899999987653 67777 55553322334466666655 56678 77776 55677774332
Q ss_pred H---hCCCc-c-----EEEecCcc-cccccchhhhhcCCc
Q 015139 259 L---KSEGG-Y-----VWACKNYD-GDVQSDFLAQGFGSL 288 (412)
Q Consensus 259 v---~~P~~-F-----Vivt~Nlf-GDILSDlaa~l~Ggl 288 (412)
+ +-|.. . |+|.||+. |+|+--+.-.+.|+.
T Consensus 675 va~~K~p~s~vaG~ANVLIfPdLeaGNI~yKllq~l~g~~ 714 (752)
T PRK07232 675 IRKDLYPFSRLKGPANVLVMPNLEAANISYNLLKELGGGV 714 (752)
T ss_pred HHHhhCCCCccCCcCCEEEeCCchhhHHHHHHHHHhcCCe
Confidence 2 23322 1 99999996 899888888776663
No 83
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.22 E-value=1.2e+02 Score=31.69 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCeEEceeeHHHHHHHHHhCCCcc----
Q 015139 190 RAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY---- 265 (412)
Q Consensus 190 eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~~~~~~VDa~~~~lv~~P~~F---- 265 (412)
-|++|-.|++|+.+.-.+.++| ..+.++++.|- +=.--..-|....|+|+..=..|
T Consensus 230 aRlVRelF~lArekaPsIIFiD--------------EIDAIg~kR~d------~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 230 ARLVRELFELAREKAPSIIFID--------------EIDAIGAKRFD------SGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred hHHHHHHHHHHhhcCCeEEEEe--------------chhhhhccccc------CCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 4899999999998655555554 33445444443 22234556778889999988888
Q ss_pred ---EEEecCcccccc
Q 015139 266 ---VWACKNYDGDVQ 277 (412)
Q Consensus 266 ---Vivt~NlfGDIL 277 (412)
||.++|-. |||
T Consensus 290 nvKVI~ATNR~-D~L 303 (406)
T COG1222 290 NVKVIMATNRP-DIL 303 (406)
T ss_pred CeEEEEecCCc-ccc
Confidence 99999987 555
No 84
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=25.11 E-value=57 Score=33.22 Aligned_cols=19 Identities=16% Similarity=-0.010 Sum_probs=15.6
Q ss_pred cEEEECCC--CchHHHHHHHH
Q 015139 11 PIVEMDGD--EMTRVFWKSIK 29 (412)
Q Consensus 11 ~I~vi~GD--GiGpEv~~~~~ 29 (412)
+|++-.|| ||||||+-.++
T Consensus 1 ~iaIT~GDp~GIGpEii~ka~ 21 (320)
T TIGR00557 1 RIAITLGDPAGIGPEIILKAL 21 (320)
T ss_pred CEEEecCCCcchHHHHHHHHH
Confidence 47888899 99999987664
No 85
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=23.79 E-value=57 Score=29.80 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=23.1
Q ss_pred ccccccee-eCCCCceEEEccccccccccccccccCCCcccCh
Q 015139 288 LGLMTSVL-VCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNS 329 (412)
Q Consensus 288 lGlapSan-ig~~~~~a~FEp~HGSAp~~~~~diaGk~i~ANP 329 (412)
||-.|+.| -++++ .+|-|+|||.- |.+|+-+ -.|
T Consensus 111 lGC~~~~~~~~~~~--~~~CPCHGS~y-----d~~g~vv-~GP 145 (177)
T COG0723 111 LGCTVPWNNAGAEG--GFFCPCHGSRY-----DPDGGVV-KGP 145 (177)
T ss_pred CCCccCcccCCCCC--eEEccCCCCeE-----cCCCCee-CCC
Confidence 45555554 22333 68999999998 8999866 554
No 86
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=23.55 E-value=99 Score=25.38 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEeCCC
Q 015139 187 ESIRAFAEASMNTAYQKKWPLYLSTKNT 214 (412)
Q Consensus 187 ~~~eRiar~AFe~A~~r~~~Vt~v~KaN 214 (412)
+.+++++++|+.+|++.+.+|+++|=.+
T Consensus 10 ~~~~~~l~~a~~la~~~~~~v~ll~v~~ 37 (132)
T cd01988 10 NTARDLLELAAALARAQNGEIIPLNVIE 37 (132)
T ss_pred hhHHHHHHHHHHHhhcCCCeEEEEEEEe
Confidence 4689999999999998877777665433
No 87
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=22.35 E-value=1.3e+02 Score=30.45 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=27.1
Q ss_pred HHHHHHHcCCCCEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCeEEceeeHH
Q 015139 195 ASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLID 252 (412)
Q Consensus 195 ~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~~~~~~VD 252 (412)
+|+|+|+ ||-+|.++- + |-.-...+..|+ ++.|+ |++....+|
T Consensus 65 yA~eLAk-rG~nvvLIs-----R-t~~KL~~v~kEI-~~~~~-------vev~~i~~D 107 (312)
T KOG1014|consen 65 YARELAK-RGFNVVLIS-----R-TQEKLEAVAKEI-EEKYK-------VEVRIIAID 107 (312)
T ss_pred HHHHHHH-cCCEEEEEe-----C-CHHHHHHHHHHH-HHHhC-------cEEEEEEEe
Confidence 6788887 676777654 3 555566777777 56665 555544444
No 88
>PRK12861 malic enzyme; Reviewed
Probab=22.26 E-value=3.4e+02 Score=31.07 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCC--CEEEEeCCCc---cccccHHHHHHHHHHHHhhcCCccccCCeEEc-eeeHHHHHHHH
Q 015139 185 TDESIRAFAEASMNTAYQKKW--PLYLSTKNTI---LKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE-HRLIDDMVAYA 258 (412)
Q Consensus 185 Tr~~~eRiar~AFe~A~~r~~--~Vt~v~KaNv---l~~tdglf~~~~~ev~a~~yp~~~~~~~I~~~-~~~VDa~~~~l 258 (412)
|-+....|+..|.++|+.-+- ||-+..=+|. --.+....+++.+-+ .+.+| ++.++ ++..|++.-.-
T Consensus 611 ~aeqla~Ia~~aa~~ak~lGiePkVAlLS~St~GS~~~~~~~km~eA~~l~-~~~~p------d~~vdGemq~DaAl~~e 683 (764)
T PRK12861 611 DAEQIAEFTIAAARQMEWLNLTPKVALLSRSNFGSGSAASGVKMRRALEIV-REQAP------DLEADGEMHGDCALDEG 683 (764)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCCchhHHHHHHHHH-HhhCC------CcEEEecCcHHHhCCHH
Confidence 566777788888888887653 5665542332 211334577777754 56788 77776 56678664332
Q ss_pred H---hCCCc-c-----EEEecCc-ccccccchhhhhcCC
Q 015139 259 L---KSEGG-Y-----VWACKNY-DGDVQSDFLAQGFGS 287 (412)
Q Consensus 259 v---~~P~~-F-----Vivt~Nl-fGDILSDlaa~l~Gg 287 (412)
+ +-|.. + |+|+||+ =|+|+-.+.-.+.|+
T Consensus 684 ~a~~K~p~s~vaG~ANVLVfPnLeAGNI~yKll~~l~g~ 722 (764)
T PRK12861 684 LRARLLPMSPLKGAANLLVCPNVDAGNIAYNLLKTEAGS 722 (764)
T ss_pred HHHhcCCCCcCCCcCCEEEECCcchhhHHHHHHHHHcCC
Confidence 2 23332 2 9999999 899999988888764
No 89
>PRK15005 universal stress protein F; Provisional
Probab=21.15 E-value=1.3e+02 Score=25.44 Aligned_cols=23 Identities=9% Similarity=-0.100 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEe
Q 015139 189 IRAFAEASMNTAYQKKWPLYLST 211 (412)
Q Consensus 189 ~eRiar~AFe~A~~r~~~Vt~v~ 211 (412)
+++.+++|+++|++.+.+|+++|
T Consensus 17 ~~~a~~~a~~la~~~~~~l~ll~ 39 (144)
T PRK15005 17 TQRVISHVEAEAKIDDAEVHFLT 39 (144)
T ss_pred HHHHHHHHHHHHhccCCeEEEEE
Confidence 68999999999998877766554
No 90
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=20.59 E-value=3.3e+02 Score=27.41 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHHHHcCC---CCEEEE---eCCCccccccHHHHHHHHHHHHhhcCCccccCCeEEc-eeeHHHHHHH
Q 015139 185 TDESIRAFAEASMNTAYQKK---WPLYLS---TKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE-HRLIDDMVAY 257 (412)
Q Consensus 185 Tr~~~eRiar~AFe~A~~r~---~~Vt~v---~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~~~-~~~VDa~~~~ 257 (412)
|-+.--.|+..|-++|+.-+ -||-++ +|.|---.+...-++.+.-+ .+.+| ++.++ ++-+|++.-.
T Consensus 157 ~~e~l~~ia~~a~~~a~~lg~~~PkVAlLs~S~~gs~~~~~~~kv~eA~~l~-~~~~~------~~~vdG~l~~D~Al~~ 229 (303)
T TIGR00651 157 NAEQLAEIAIQSAKSAKSFGEIEPKVALLSYSTKGSGSGEDVEKVREATRIA-KEKRP------DLTIDGELQFDAAFVE 229 (303)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCCCccHHHHHHHHHH-hccCC------CeEEEecCchhhhCCH
Confidence 56777788999999998765 255444 33342222334566666555 56788 77776 4556776432
Q ss_pred H---HhCCCc-c-----EEEecCcc-cccccchhhhhcCC
Q 015139 258 A---LKSEGG-Y-----VWACKNYD-GDVQSDFLAQGFGS 287 (412)
Q Consensus 258 l---v~~P~~-F-----Vivt~Nlf-GDILSDlaa~l~Gg 287 (412)
= .+-|.. + |+|+||++ |+|+--+.-.+.|+
T Consensus 230 ~~a~~K~~~s~v~G~AdvLV~Pnl~aGNi~~K~~~~~~~~ 269 (303)
T TIGR00651 230 KVAEKKAPNSPVAGSANVFVFPDLDAGNIGYKIVQRLGDA 269 (303)
T ss_pred HHHHhhCCCCccCCcCCEEEeCCchHHHHHHHHHHHhcCC
Confidence 1 233433 2 99999998 77777666665544
No 91
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=20.27 E-value=2.3e+02 Score=27.42 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=45.2
Q ss_pred HHHHHcCCC--CEEEEeCCCccccccHHHHHHHHHHHHhhcCCccccCCeEEceeeHHHHH-HHHHhCCCcc
Q 015139 197 MNTAYQKKW--PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMV-AYALKSEGGY 265 (412)
Q Consensus 197 Fe~A~~r~~--~Vt~v~KaNvl~~tdglf~~~~~ev~a~~yp~~~~~~~I~~~~~~VDa~~-~~lv~~P~~F 265 (412)
.+||.+.++ +|.++|--...+.|-.||. +| .+.|+ +|.++.+.-|++. ..++++-..|
T Consensus 62 id~~~~~~~~~~l~~idT~~~~PeT~~l~d----~V-ekkY~------~i~I~~~~pd~~e~ea~~~~K~~~ 122 (261)
T KOG0189|consen 62 IDMLSKTGRPFRLFFIDTLHHFPETLRLFD----AV-EKKYG------NIRIHVYFPDAVEVEALFASKGGF 122 (261)
T ss_pred HHHHHHcCCCceeEEeeccccChHHHHHHH----HH-HHhcC------ceEEEEEcchhHHHHHHHHhccch
Confidence 467776654 7999998888888877764 45 67899 9999999999995 5577776665
No 92
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=20.16 E-value=1.8e+02 Score=23.78 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=30.3
Q ss_pred ecccEEEECCCCchHHHH--HHHHHHHhcCCCceEEEEEecC
Q 015139 8 VANPIVEMDGDEMTRVFW--KSIKDKLIFPFLELDIKYFDLG 47 (412)
Q Consensus 8 m~~~I~vi~GDGiGpEv~--~~~~~vl~~~~~~i~~~~~~~G 47 (412)
|+++|.+.=|-|+|--.+ ..+.+.+.+.|++++++..+++
T Consensus 1 mk~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~ 42 (94)
T PRK10310 1 MKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVN 42 (94)
T ss_pred CCCeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHH
Confidence 556899999999998877 3344656677888888776654
Done!