BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015140
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ACZ|A Chain A, Glucoamylase, Granular Starch-Binding Domain Complex
With Cyclodextrin, Nmr, 5 Structures
Length = 108
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 11 VRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPM-----KWSESG--WLCDLEFKGGES 63
V ++F L +GE++ ++GS +LG W+ + + K++ S W + GES
Sbjct: 7 VAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGES 66
Query: 64 IEYKFVIVRNDKSKAWEAGDNRILKLPKG 92
EYKF+ + +D S WE+ NR +P+
Sbjct: 67 FEYKFIRIESDDSVEWESDPNREYTVPQA 95
>pdb|1AC0|A Chain A, Glucoamylase, Granular Starch-Binding Domain Complex
With Cyclodextrin, Nmr, Minimized Average Structure
pdb|1KUL|A Chain A, Glucoamylase, Granular Starch-Binding Domain, Nmr, 5
Structures
pdb|1KUM|A Chain A, Glucoamylase, Granular Starch-Binding Domain, Nmr,
Minimized Average Structure
Length = 108
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 11 VRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPM-----KWSESG--WLCDLEFKGGES 63
V ++F L +GE++ ++GS +LG W+ + + K++ S W + GES
Sbjct: 7 VAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGES 66
Query: 64 IEYKFVIVRNDKSKAWEAGDNRILKLPKG 92
EYKF+ + +D S WE+ NR +P+
Sbjct: 67 FEYKFIRIESDDSVEWESDPNREYTVPQA 95
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSWKKNV---PMK----WSESGWLCDLEFK 59
G V + F +++ G++V + G+ ELG+W N PM + W D+
Sbjct: 584 GDQVTVRFVINNATTALGQNVFLTGNVSELGNWDPNNAIGPMYNQVVYQYPTWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G NR P G+ + +W
Sbjct: 644 AGQTIEFKF-LKKQGSTVTWEGGANRTFTTPTSGTATVNVNW 684
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSWKKNV---PMK----WSESGWLCDLEFK 59
G V + F +++ G++V + G+ ELG+W N PM + W D+
Sbjct: 584 GDQVTVRFVINNATTALGQNVFLTGNVSELGNWDPNNAIGPMYNQVVYQYPTWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G NR P G+ + +W
Sbjct: 644 AGQTIEFKF-LKKQGSTVTWEGGANRTFTTPTSGTATVNVNW 684
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSWKKNV---PMK----WSESGWLCDLEFK 59
G V + F +++ G++V + G+ ELG+W N PM + W D+
Sbjct: 584 GDQVTVRFVINNATTALGQNVFLTGNVSELGNWDPNNAIGPMYNQVVYQYPTWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G NR P G+ + +W
Sbjct: 644 AGQTIEFKF-LKKQGSTVTWEGGANRTFTTPTSGTATVNVNW 684
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSWKKNV---PMK----WSESGWLCDLEFK 59
G V + F +++ G++V + G+ ELG+W N PM + W D+
Sbjct: 584 GDQVTVRFVINNATTALGQNVFLTGNVSELGNWDPNNAIGPMYNQVVYQYPTWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G NR P G+ + +W
Sbjct: 644 AGQTIEFKF-LKKQGSTVTWEGGANRTFTTPTSGTATVNVNW 684
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSWKKNV---PMK----WSESGWLCDLEFK 59
G V + F +++ G++V + G+ ELG+W N PM + W D+
Sbjct: 584 GDQVTVRFVINNATTALGQNVFLTGNVSELGNWDPNNAIGPMYNQVVYQYPTWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G NR P G+ + +W
Sbjct: 644 AGQTIEFKF-LKKQGSTVTWEGGANRTFTTPTSGTATVNVNW 684
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSWKKNV---PMK----WSESGWLCDLEFK 59
G V + F +++ G++V + G+ ELG+W N PM + W D+
Sbjct: 584 GDQVTVRFVINNATTALGQNVFLTGNVSELGNWDPNNAIGPMYNQVVYQYPTWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G NR P G+ + +W
Sbjct: 644 AGQTIEFKF-LKKQGSTVTWEGGANRTFTTPTSGTATVNVNW 684
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 10 NVRISFRL---DHQVEFGEHVVILGSTKELGSW---KKNVPM----KWSESGWLCDLEFK 59
N ++S R + G+++ I+G+ ELG+W K PM +S W D+
Sbjct: 577 NDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVP 636
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF+ + + WE+G N + P + +I+ W
Sbjct: 637 EGKTIEFKFIKKDSQGNVTWESGSNHVYTTPTNTTGKIIVDW 678
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSW---KKNVPMK----WSESGWLCDLEFK 59
G V + F +++ G++V + GS ELG+W K PM + W D+
Sbjct: 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G N P G+ I +W
Sbjct: 644 AGKTIEFKF-LKKQGSTATWEGGSNHTFTAPSSGTGTINVNW 684
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 23 FGEHVVILGSTKELGSW---KKNVPM----KWSESGWLCDLEFKGGESIEYKFVIVRNDK 75
+GE+V + G+ ELG+W K PM + W D+ G +I++KF I +N
Sbjct: 597 YGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKF-IKKNGN 655
Query: 76 SKAWEAGDNRILKLPKGGSFEIVCHWNK 103
+ WE G N +P + ++ +W +
Sbjct: 656 TITWEGGSNHTYTVPSSSTGTVIVNWQQ 683
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 23 FGEHVVILGSTKELGSW---KKNVPM----KWSESGWLCDLEFKGGESIEYKFVIVRNDK 75
+GE+V + G+ ELG+W K PM + W D+ G +I++KF I +N
Sbjct: 597 YGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKF-IKKNGN 655
Query: 76 SKAWEAGDNRILKLPKGGSFEIVCHWNK 103
+ WE G N +P + ++ +W +
Sbjct: 656 TITWEGGSNHTYTVPSSSTGTVIVNWQQ 683
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSW---KKNVPMK----WSESGWLCDLEFK 59
G V + F +++ G++V + GS ELG+W K PM + W D+
Sbjct: 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G N P G+ I +W
Sbjct: 644 AGKTIEFKF-LKKQGSTVTWEGGSNHTFTAPSSGTATINVNW 684
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSW---KKNVPMK----WSESGWLCDLEFK 59
G V + F +++ G++V + GS ELG+W K PM + W D+
Sbjct: 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G N P G+ I +W
Sbjct: 644 AGKTIEFKF-LKKQGSTVTWEGGSNHTFTAPSSGTATINVNW 684
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSW---KKNVPMK----WSESGWLCDLEFK 59
G V + F +++ G++V + GS ELG+W K PM + W D+
Sbjct: 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G N P G+ I +W
Sbjct: 644 AGKTIEFKF-LKKQGSTVTWEGGSNHTFTAPSSGTATINVNW 684
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSW---KKNVPMK----WSESGWLCDLEFK 59
G V + F +++ G++V + GS ELG+W K PM + W D+
Sbjct: 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G N P G+ I +W
Sbjct: 644 AGKTIEFKF-LKKQGSTVTWEGGSNHTFTAPSSGTATINVNW 684
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSW---KKNVPMK----WSESGWLCDLEFK 59
G V + F +++ G++V + GS ELG+W K PM + W D+
Sbjct: 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G N P G+ I +W
Sbjct: 644 AGKTIEFKF-LKKQGSTVTWEGGSNHTFTAPSSGTATINVNW 684
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSW---KKNVPMK----WSESGWLCDLEFK 59
G V + F +++ G++V + GS ELG+W K PM + W D+
Sbjct: 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G N P G+ I +W
Sbjct: 644 AGKTIEFKF-LKKQGSTVTWEGGSNHTFTAPSSGTATINVNW 684
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSW---KKNVPMK----WSESGWLCDLEFK 59
G V + F +++ G++V + GS ELG+W K PM + W D+
Sbjct: 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G N P G+ I +W
Sbjct: 644 AGKTIEFKF-LKKQGSTVTWEGGSNHTFTAPSSGTATINVNW 684
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSW---KKNVPMK----WSESGWLCDLEFK 59
G V + F +++ G++V + GS ELG+W K PM + W D+
Sbjct: 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G N P G+ I +W
Sbjct: 644 AGKTIEFKF-LKKQGSTVTWEGGSNHTFTAPSSGTATINVNW 684
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSW---KKNVPMK----WSESGWLCDLEFK 59
G V + F +++ G++V + GS ELG+W K PM + W D+
Sbjct: 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G N P G+ I +W
Sbjct: 644 AGKTIEFKF-LKKQGSTVTWEGGSNHTFTAPSSGTATINVNW 684
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSW---KKNVPMK----WSESGWLCDLEFK 59
G V + F +++ G++V + GS ELG+W K PM + W D+
Sbjct: 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G N P G+ I +W
Sbjct: 644 AGKTIEFKF-LKKQGSTVTWEGGSNHTFTAPSSGTATINVNW 684
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSW---KKNVPMK----WSESGWLCDLEFK 59
G V + F +++ G++V + GS ELG+W K PM + W D+
Sbjct: 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G N P G+ I +W
Sbjct: 644 AGKTIEFKF-LKKQGSTVTWEGGSNHTFTAPSSGTATINVNW 684
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSW---KKNVPMK----WSESGWLCDLEFK 59
G V + F +++ G++V + GS ELG+W K PM + W D+
Sbjct: 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G N P G+ I +W
Sbjct: 644 AGKTIEFKF-LKKQGSTVTWEGGSNHTFTAPSSGTATINVNW 684
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSW---KKNVPMK----WSESGWLCDLEFK 59
G V + F +++ G++V + GS ELG+W K PM + W D+
Sbjct: 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G N P G+ I +W
Sbjct: 644 AGKTIEFKF-LKKQGSTVTWEGGSNHTFTAPSSGTATINVNW 684
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSW---KKNVPMK----WSESGWLCDLEFK 59
G V + F +++ G++V + GS ELG+W K PM + W D+
Sbjct: 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G N P G+ I +W
Sbjct: 644 AGKTIEFKF-LKKQGSTVTWEGGSNHTFTAPSSGTATINVNW 684
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 5 SGHGGNVRISFRLDHQVEFGEHVVILGSTKELGSWKKNVP----------MKWSESGWLC 54
SG +V + + G+ + + G+ ELG+W + + + W
Sbjct: 578 SGTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFY 637
Query: 55 DLEFKGGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++I++KF I R D + WE G N + P G + I W
Sbjct: 638 VFSVPAGKTIQFKFFIKRADGTIQWENGSNHVATTPTGATGNITVTW 684
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSW---KKNVPMK----WSESGWLCDLEFK 59
G V + F +++ G++V + GS ELG+ K PM + W D+
Sbjct: 584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNADPAKAIGPMYNQVVYQYPNWYYDVSVP 643
Query: 60 GGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G++IE+KF + + + WE G N P G+ I +W
Sbjct: 644 AGKTIEFKF-LKKQGSTVTWEGGSNHTFTAPSSGTATINVNW 684
>pdb|2VN4|A Chain A, Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea
Jecorina
pdb|2VN7|A Chain A, Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea
Jecorina
Length = 599
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 10 NVRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSESG-------WLCDLEFKGGE 62
+V ++F +FG+ V + G+ LG+W + + W+ + + G+
Sbjct: 496 SVAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGD 555
Query: 63 SIEYKFVIVRNDKSKAWEAGDNRILKLP 90
+EYK++ V D S WE+ N +P
Sbjct: 556 VVEYKYINVGQDGSVTWESDPNHTYTVP 583
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSWKKN---VPMKWSE-----SGWLCDLEF 58
G V + F +++ G+++ + G+ ELG+W + +++ W D+
Sbjct: 582 GDQVTVRFVVNNASTTLGQNLYLTGNVAELGNWSTGSTAIGPAFNQVIHQYPTWYYDVSV 641
Query: 59 KGGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G+ +E+KF +N + WE+G N P G+ + +W
Sbjct: 642 PAGKQLEFKF-FKKNGSTITWESGSNHTFTTPASGTATVTVNW 683
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSWKKN---VPMKWSE-----SGWLCDLEF 58
G V + F +++ G+++ + G+ ELG+W + +++ W D+
Sbjct: 582 GDQVTVRFVVNNASTTLGQNLYLTGNVAELGNWSTGSTAIGPAFNQVIHQYPTWYYDVSV 641
Query: 59 KGGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G+ +E+KF +N + WE+G N P G+ + +W
Sbjct: 642 PAGKQLEFKF-FKKNGSTITWESGSNHTFTTPASGTATVTVNW 683
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSWKKN---VPMKWSE-----SGWLCDLEF 58
G V + F +++ G+++ + G+ ELG+W + +++ W D+
Sbjct: 582 GDQVTVRFVVNNASTTLGQNLYLTGNVAELGNWSTGSTAIGPAFNQVIHQYPTWYYDVSV 641
Query: 59 KGGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G+ +E+KF +N + WE+G N P G+ + +W
Sbjct: 642 PAGKQLEFKF-FKKNGSTITWESGSNHTFTTPASGTATVTVNW 683
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSWKKN---VPMKWSE-----SGWLCDLEF 58
G V + F +++ G+++ + G+ ELG+W + +++ W D+
Sbjct: 582 GDQVTVRFVVNNASTTLGQNLYLTGNVAELGNWSTGSTAIGPAFNQVIHQYPTWYYDVSV 641
Query: 59 KGGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G+ +E+KF +N + WE+G N P G+ + +W
Sbjct: 642 PAGKQLEFKF-FKKNGSTITWESGSNHTFTTPASGTATVTVNW 683
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 8 GGNVRISFRLDH-QVEFGEHVVILGSTKELGSWKKN---VPMKWSE-----SGWLCDLEF 58
G V + F +++ G+++ + G+ ELG+W + +++ W D+
Sbjct: 576 GDQVTVRFVVNNASTTLGQNLYLTGNVAELGNWSTGSTAIGPAFNQVIHQYPTWYYDVSV 635
Query: 59 KGGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
G+ +E+KF +N + WE+G N P G+ + +W
Sbjct: 636 PAGKQLEFKF-FKKNGSTITWESGSNHTFTTPASGTATVTVNW 677
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 11 VRISFRLDH-QVEFGEHVVILGSTKELGSWKKNVPMKWSESG----WLCDLEFKGGESIE 65
V +SFR D+ + G+ V +G+ +LG+W ++ +++ W + G++ E
Sbjct: 431 VSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDTSGYPTWKGSIALPAGQNEE 490
Query: 66 YKFVIVRNDKS----KAWEAGDNRILKLPKGGS 94
+K ++RN+ + + W+ G N L +G +
Sbjct: 491 WK-CLIRNEANATQVRQWQGGANNSLTPSEGAT 522
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,726,676
Number of Sequences: 62578
Number of extensions: 523417
Number of successful extensions: 1173
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 35
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)