Query 015140
Match_columns 412
No_of_seqs 187 out of 802
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 03:29:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02950 4-alpha-glucanotransf 99.9 3E-22 6.4E-27 222.0 15.0 157 7-169 5-201 (909)
2 cd05818 CBM20_water_dikinase P 99.9 8.3E-22 1.8E-26 163.4 12.2 92 10-101 1-92 (92)
3 cd05808 CBM20_alpha_amylase Al 99.9 2.3E-21 5.1E-26 159.0 12.3 92 11-102 1-95 (95)
4 PF00686 CBM_20: Starch bindin 99.8 1.1E-20 2.3E-25 156.6 11.8 88 10-97 1-95 (96)
5 cd05467 CBM20 The family 20 ca 99.8 3.5E-20 7.7E-25 151.6 11.8 90 12-101 1-96 (96)
6 cd05811 CBM20_glucoamylase Glu 99.8 8.8E-20 1.9E-24 153.4 11.9 95 7-101 3-106 (106)
7 cd05815 CBM20_DPE2_repeat1 Dis 99.8 1.5E-19 3.3E-24 151.2 11.2 90 12-101 1-101 (101)
8 cd05807 CBM20_CGTase CGTase, C 99.8 3.3E-19 7.2E-24 149.5 11.0 93 9-101 1-101 (101)
9 cd05813 CBM20_genethonin_1 Gen 99.8 7.2E-19 1.6E-23 145.6 10.5 92 11-103 1-94 (95)
10 cd05820 CBM20_novamyl Novamyl 99.8 1.1E-18 2.4E-23 147.4 11.5 94 10-103 2-103 (103)
11 cd05817 CBM20_DSP Dual-specifi 99.7 9E-18 1.9E-22 140.9 10.1 89 12-104 1-94 (100)
12 cd05809 CBM20_beta_amylase Bet 99.7 2.1E-17 4.5E-22 138.5 10.9 92 9-101 1-99 (99)
13 cd05816 CBM20_DPE2_repeat2 Dis 99.7 4.2E-17 9.2E-22 136.5 10.5 79 13-91 2-86 (99)
14 cd05810 CBM20_alpha_MTH Glucan 99.7 6.5E-17 1.4E-21 135.6 10.1 83 11-93 1-90 (97)
15 cd05814 CBM20_Prei4 Prei4, N-t 99.5 5E-14 1.1E-18 121.9 9.1 78 12-89 2-94 (120)
16 cd05806 CBM20_laforin Laforin 99.5 1E-13 2.2E-18 120.2 10.4 80 11-91 1-97 (112)
17 PLN02950 4-alpha-glucanotransf 99.4 4.5E-13 9.7E-18 149.5 11.4 86 7-92 149-239 (909)
18 cd02859 AMPKbeta_GBD_like AMP- 97.6 0.00035 7.5E-09 56.6 7.6 53 11-70 2-54 (79)
19 cd02861 E_set_proteins_like E 97.0 0.0029 6.4E-08 51.1 7.3 54 11-71 2-56 (82)
20 PF00686 CBM_20: Starch bindin 94.6 0.016 3.4E-07 48.0 1.4 38 129-168 15-52 (96)
21 cd05815 CBM20_DPE2_repeat1 Dis 93.6 0.026 5.7E-07 47.2 0.7 28 129-156 13-40 (101)
22 cd02854 Glycogen_branching_enz 92.8 0.74 1.6E-05 39.1 8.3 57 13-76 7-73 (99)
23 cd05467 CBM20 The family 20 ca 92.7 0.04 8.6E-07 44.9 0.5 28 129-156 13-40 (96)
24 cd05808 CBM20_alpha_amylase Al 92.6 0.037 7.9E-07 45.3 0.2 28 129-156 14-41 (95)
25 cd05817 CBM20_DSP Dual-specifi 92.5 0.044 9.6E-07 46.1 0.6 28 129-156 13-40 (100)
26 PF02922 CBM_48: Carbohydrate- 92.4 0.59 1.3E-05 37.1 6.9 58 12-74 12-74 (85)
27 cd05816 CBM20_DPE2_repeat2 Dis 91.2 0.069 1.5E-06 44.7 0.3 35 129-169 14-48 (99)
28 cd05814 CBM20_Prei4 Prei4, N-t 91.1 0.075 1.6E-06 46.1 0.4 29 128-156 14-42 (120)
29 cd05806 CBM20_laforin Laforin 90.1 0.12 2.6E-06 45.3 0.8 28 129-156 15-42 (112)
30 cd05811 CBM20_glucoamylase Glu 88.9 0.13 2.8E-06 43.2 0.2 40 128-169 19-58 (106)
31 cd05810 CBM20_alpha_MTH Glucan 88.7 0.13 2.9E-06 43.2 0.1 29 128-156 14-42 (97)
32 cd02858 Esterase_N_term Estera 88.1 2.5 5.4E-05 34.5 7.2 54 12-71 7-61 (85)
33 KOG2421 Predicted starch-bindi 87.2 0.68 1.5E-05 48.8 4.2 64 11-74 44-118 (417)
34 COG2517 Predicted RNA-binding 85.8 0.93 2E-05 43.5 3.9 63 304-370 39-110 (219)
35 PF03423 CBM_25: Carbohydrate 85.8 5.4 0.00012 33.1 8.0 67 9-83 2-78 (87)
36 cd02688 E_set E or "early" set 85.3 5.3 0.00012 30.5 7.4 57 12-73 5-62 (83)
37 COG3943 Virulence protein [Gen 85.0 0.42 9.1E-06 47.4 1.3 29 308-338 174-202 (329)
38 PF02903 Alpha-amylase_N: Alph 80.8 9 0.0002 32.9 7.8 68 8-79 20-95 (120)
39 cd05813 CBM20_genethonin_1 Gen 80.1 0.67 1.5E-05 38.3 0.5 26 129-156 15-40 (95)
40 cd05818 CBM20_water_dikinase P 79.9 0.64 1.4E-05 38.6 0.3 25 129-155 15-39 (92)
41 cd05807 CBM20_CGTase CGTase, C 79.7 0.51 1.1E-05 39.6 -0.3 26 129-154 17-42 (101)
42 PF10777 YlaC: Inner membrane 70.6 2.9 6.3E-05 38.8 2.1 34 283-316 106-139 (155)
43 cd05820 CBM20_novamyl Novamyl 68.0 2 4.3E-05 36.4 0.4 27 128-154 17-46 (103)
44 KOG1616 Protein involved in Sn 66.4 13 0.00029 37.4 6.0 54 24-86 90-146 (289)
45 COG0296 GlgB 1,4-alpha-glucan 64.4 27 0.00058 39.2 8.3 61 12-79 37-101 (628)
46 PLN02447 1,4-alpha-glucan-bran 61.7 18 0.00038 41.4 6.4 56 13-75 116-180 (758)
47 PRK12568 glycogen branching en 59.6 29 0.00064 39.5 7.6 57 12-75 139-198 (730)
48 cd02857 CD_pullulan_degrading_ 57.1 78 0.0017 26.1 8.2 61 9-73 16-82 (116)
49 cd05809 CBM20_beta_amylase Bet 56.8 4.2 9.2E-05 34.0 0.4 25 129-153 17-42 (99)
50 cd00126 PAH Pancreatic Hormone 53.5 14 0.0003 26.7 2.5 25 338-364 6-30 (36)
51 cd09030 DUF1425 Putative perip 52.7 1.1E+02 0.0023 25.7 8.3 55 45-99 27-86 (101)
52 PRK12313 glycogen branching en 52.0 75 0.0016 35.2 9.2 57 12-75 39-98 (633)
53 PF13310 Virulence_RhuM: Virul 50.3 9.1 0.0002 38.4 1.6 68 246-337 76-146 (260)
54 cd02860 Pullulanase_N_term Pul 48.7 1.5E+02 0.0033 24.3 8.7 57 13-73 10-69 (100)
55 PRK14705 glycogen branching en 46.9 64 0.0014 38.9 8.0 58 12-76 639-700 (1224)
56 PF10540 Membr_traf_MHD: Munc1 44.1 32 0.00069 30.8 4.0 36 339-374 75-110 (137)
57 PRK05402 glycogen branching en 43.4 1.9E+02 0.0041 32.8 10.7 59 12-77 132-194 (726)
58 PF03195 DUF260: Protein of un 43.0 24 0.00053 30.5 2.9 53 348-406 27-79 (101)
59 PF04336 DUF479: Protein of un 41.5 61 0.0013 27.6 5.2 46 309-361 61-106 (106)
60 COG3543 Uncharacterized conser 41.3 21 0.00045 32.6 2.3 23 341-363 19-41 (135)
61 PF13234 rRNA_proc-arch: rRNA- 41.1 55 0.0012 31.9 5.5 102 271-379 140-266 (268)
62 PRK14706 glycogen branching en 40.8 96 0.0021 34.8 7.8 57 12-75 39-98 (639)
63 smart00529 HTH_DTXR Helix-turn 39.0 22 0.00048 28.7 2.0 89 291-390 1-95 (96)
64 COG2088 SpoVG Uncharacterized 38.1 27 0.00058 30.0 2.4 41 287-330 52-92 (95)
65 PF07233 DUF1425: Protein of u 36.2 1E+02 0.0022 25.8 5.6 56 44-99 18-78 (94)
66 PF08974 DUF1877: Domain of un 35.9 35 0.00076 31.3 3.0 26 339-364 125-155 (167)
67 PF12126 DUF3583: Protein of u 35.6 26 0.00055 36.0 2.2 71 326-404 77-151 (324)
68 cd02855 Glycogen_branching_enz 35.1 2.4E+02 0.0053 22.8 10.2 54 13-73 23-80 (106)
69 PRK12285 tryptophanyl-tRNA syn 33.3 2.9E+02 0.0062 29.0 9.5 150 224-392 204-364 (368)
70 cd07609 BAR_SIP3_fungi The Bin 32.2 76 0.0016 30.8 4.8 67 329-398 38-114 (214)
71 PLN02316 synthase/transferase 30.9 94 0.002 36.9 6.0 77 8-89 328-416 (1036)
72 PF09580 Spore_YhcN_YlaJ: Spor 30.6 1.2E+02 0.0026 27.5 5.6 58 300-359 113-176 (177)
73 COG0497 RecN ATPase involved i 29.2 2.2E+02 0.0048 31.7 8.2 167 234-409 213-389 (557)
74 PF12690 BsuPI: Intracellular 28.3 2.9E+02 0.0062 22.7 6.9 50 54-105 16-72 (82)
75 PF12108 SF3a60_bindingd: Spli 27.8 48 0.001 22.7 1.8 11 349-359 7-17 (28)
76 PF00159 Hormone_3: Pancreatic 26.4 56 0.0012 23.5 2.1 24 339-364 7-30 (36)
77 PRK00451 glycine dehydrogenase 26.2 2.9E+02 0.0063 28.5 8.2 85 276-365 21-128 (447)
78 cd02853 MTHase_N_term Maltooli 25.7 2.6E+02 0.0057 22.3 6.2 49 13-71 10-59 (85)
79 PF12728 HTH_17: Helix-turn-he 25.1 19 0.00042 26.1 -0.5 27 213-240 14-40 (51)
80 PF07729 FCD: FCD domain; Int 25.1 1.5E+02 0.0032 23.6 4.7 74 306-379 6-80 (125)
81 PLN03229 acetyl-coenzyme A car 25.0 2.9E+02 0.0063 31.9 8.3 64 302-368 556-627 (762)
82 PLN03229 acetyl-coenzyme A car 24.8 5E+02 0.011 30.1 10.0 192 128-375 281-492 (762)
83 cd02767 MopB_ydeP The MopB_yde 24.2 1.7E+02 0.0038 32.2 6.3 71 324-395 236-310 (574)
84 PF06935 DUF1284: Protein of u 24.1 70 0.0015 27.4 2.7 19 342-360 1-19 (103)
85 KOG3647 Predicted coiled-coil 24.1 1.2E+02 0.0026 31.1 4.6 53 344-396 163-216 (338)
86 PF06798 PrkA: PrkA serine pro 23.0 6.7E+02 0.015 25.0 9.6 104 286-392 18-127 (254)
87 cd02856 Glycogen_debranching_e 22.7 2.8E+02 0.0062 22.9 6.1 54 13-72 11-66 (103)
88 COG5466 Predicted small metal- 22.4 1.6E+02 0.0035 23.5 4.1 40 234-314 17-57 (59)
89 PF06348 DUF1059: Protein of u 21.8 64 0.0014 24.9 1.8 18 298-315 39-56 (57)
90 TIGR03321 alt_F1F0_F0_B altern 21.3 1.6E+02 0.0036 28.6 5.0 69 247-319 128-205 (246)
91 PRK05355 3-phosphoserine/phosp 21.1 1.5E+02 0.0033 30.2 4.9 46 319-364 7-63 (360)
92 PF12040 DUF3526: Domain of un 21.1 92 0.002 28.2 3.0 50 314-363 76-126 (156)
93 PLN02486 aminoacyl-tRNA ligase 21.0 2.5E+02 0.0055 29.6 6.6 67 225-311 221-290 (383)
94 PLN02373 soluble inorganic pyr 21.0 61 0.0013 31.1 1.8 54 292-351 127-186 (188)
95 cd08818 CARD_MDA5_1 Caspase ac 21.0 1.3E+02 0.0028 25.7 3.6 34 302-342 32-68 (88)
96 cd00611 PSAT_like Phosphoserin 21.0 2.5E+02 0.0055 28.2 6.4 39 340-378 35-83 (355)
97 TIGR00571 dam DNA adenine meth 20.7 1.1E+02 0.0024 30.0 3.7 79 267-364 13-97 (266)
98 smart00311 PWI PWI, domain in 20.4 1.9E+02 0.0042 23.1 4.4 46 307-354 7-52 (74)
No 1
>PLN02950 4-alpha-glucanotransferase
Probab=99.88 E-value=3e-22 Score=221.97 Aligned_cols=157 Identities=25% Similarity=0.479 Sum_probs=130.8
Q ss_pred CCCeEEEEEEEEeecCCCCEEEEEeCCCCcCCCC--ccccCeee---CC-cEEEEEEecCCceEEEEEEEEeCCCc-eEE
Q 015140 7 HGGNVRISFRLDHQVEFGEHVVILGSTKELGSWK--KNVPMKWS---ES-GWLCDLEFKGGESIEYKFVIVRNDKS-KAW 79 (412)
Q Consensus 7 ~~~~v~V~F~I~yqT~~GE~V~VvGS~~eLGnWd--kAv~Ms~t---dg-~W~veV~lp~gt~~EYKYvI~d~~g~-veW 79 (412)
+...|+|+|++.|.|.|||+|+|+||+++||+|+ ++++|+++ ++ .|+++|.+|.+..|+|||++++.++. +.|
T Consensus 5 ~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g~vi~W 84 (909)
T PLN02950 5 SLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYVVDDNKNVLRW 84 (909)
T ss_pred CCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEEEeCCCceeee
Confidence 4567999999999999999999999999999999 99999765 44 89999999998899999999887766 589
Q ss_pred ecCCCceEEcCCC----CeEEEEEEeCCCCcccccccccc-c---ccCCC----------C--CCCC-----------C-
Q 015140 80 EAGDNRILKLPKG----GSFEIVCHWNKTGEAVDLLHLVE-D---VLDNG----------S--VVTD-----------A- 127 (412)
Q Consensus 80 E~G~NR~L~lp~~----~s~~V~D~W~~~pe~~~LySSAf-d---~~~~~----------~--~~p~-----------q- 127 (412)
|.|.||.+.+|.+ ..++|.|+|.+++++.++|+||| + .+... . .++. +
T Consensus 85 E~g~NR~l~lp~~~~~~~~~~i~D~W~~~~~~~~~~~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~F~v~~~~~ 164 (909)
T PLN02950 85 EAGKKRKLVLPEGLQGGELVELHDLWQKSGPEALFFRSAFKDVIFRHSWGVNTERPLGALNKPPAPDEIVVRFKIACPRL 164 (909)
T ss_pred ecCCCeeEECCcccCCCceEEEEEEecCCchhhhhhHHHHhhhhcccccccccccccccccccCCCCceeEEEEEecCcc
Confidence 9999999999963 47999999999999999999999 2 22110 0 1111 1
Q ss_pred -ccccccccCCCCccCCCCCCcceeeecCCCcccccccccccc
Q 015140 128 -APDALLEVGTSPFVGQWQGKSASFMRADDHWNREMERKWDTS 169 (412)
Q Consensus 128 -l~~~L~l~Gss~~LG~W~~~kA~~M~~~n~~~~~~~~~wdt~ 169 (412)
.++.++++|+.+.||+|+..+|+.|+.++ ...|-.+
T Consensus 165 ~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~------~p~W~~~ 201 (909)
T PLN02950 165 EEGTSVYVTGSIAQLGNWQVDDGLKLNYTG------DSIWEAD 201 (909)
T ss_pred CCCCeEEEEechhhcCCCCcccccccccCC------CCcEEEE
Confidence 27888999999999999999999999865 3456654
No 2
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.87 E-value=8.3e-22 Score=163.37 Aligned_cols=92 Identities=71% Similarity=1.377 Sum_probs=87.2
Q ss_pred eEEEEEEEEeecCCCCEEEEEeCCCCcCCCCccccCeeeCCcEEEEEEecCCceEEEEEEEEeCCCceEEecCCCceEEc
Q 015140 10 NVRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSESGWLCDLEFKGGESIEYKFVIVRNDKSKAWEAGDNRILKL 89 (412)
Q Consensus 10 ~v~V~F~I~yqT~~GE~V~VvGS~~eLGnWdkAv~Ms~tdg~W~veV~lp~gt~~EYKYvI~d~~g~veWE~G~NR~L~l 89 (412)
.|.|+|+|+|+|.+||.|+|+||+++||+|+++++|+++++.|++++++|.+..|||||++.+.++.+.||.|+||.+.+
T Consensus 1 ~~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v~WE~g~Nr~~~~ 80 (92)
T cd05818 1 KVKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWTENGWVCDLELDGGELVEYKFVIVKRDGSVIWEGGNNRVLEL 80 (92)
T ss_pred CEEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccCCCCEEEEEEeCCCCcEEEEEEEEcCCCCEEEEeCCCEEEEc
Confidence 48999999999999999999999999999998899999988999999999988999999999888888999999999999
Q ss_pred CCCCeEEEEEEe
Q 015140 90 PKGGSFEIVCHW 101 (412)
Q Consensus 90 p~~~s~~V~D~W 101 (412)
|..++++|.+.|
T Consensus 81 ~~~~~~~~~~~~ 92 (92)
T cd05818 81 PKEGNFEIVCHW 92 (92)
T ss_pred cCCCCEEEEEeC
Confidence 998888999887
No 3
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=99.86 E-value=2.3e-21 Score=159.05 Aligned_cols=92 Identities=26% Similarity=0.639 Sum_probs=85.9
Q ss_pred EEEEEEEEeecCCCCEEEEEeCCCCcCCCC--ccccCeeeCC-cEEEEEEecCCceEEEEEEEEeCCCceEEecCCCceE
Q 015140 11 VRISFRLDHQVEFGEHVVILGSTKELGSWK--KNVPMKWSES-GWLCDLEFKGGESIEYKFVIVRNDKSKAWEAGDNRIL 87 (412)
Q Consensus 11 v~V~F~I~yqT~~GE~V~VvGS~~eLGnWd--kAv~Ms~tdg-~W~veV~lp~gt~~EYKYvI~d~~g~veWE~G~NR~L 87 (412)
+.|+|+|+++|.+||+|+|+||+++||+|+ ++++|++.++ .|++++.+|.+..|+|||++.+.++.+.||.++||.+
T Consensus 1 v~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~~~~~~~~~~WE~~~nr~~ 80 (95)
T cd05808 1 VAVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYIKKDGSGTVTWESGPNRTA 80 (95)
T ss_pred CeEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEEEECCCCcEEEecCCCEEE
Confidence 579999999999999999999999999999 8999999886 9999999999889999999987777789999999999
Q ss_pred EcCCCCeEEEEEEeC
Q 015140 88 KLPKGGSFEIVCHWN 102 (412)
Q Consensus 88 ~lp~~~s~~V~D~W~ 102 (412)
.+|..+.++|.|.|.
T Consensus 81 ~~~~~~~~~i~d~w~ 95 (95)
T cd05808 81 TTPASGTLTLNDTWR 95 (95)
T ss_pred ECCCCccEEEEeEEC
Confidence 999888899999994
No 4
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=99.85 E-value=1.1e-20 Score=156.58 Aligned_cols=88 Identities=41% Similarity=0.861 Sum_probs=75.4
Q ss_pred eEEEEEEEEeecCCCCEEEEEeCCCCcCCCC--ccccCeeeC-----CcEEEEEEecCCceEEEEEEEEeCCCceEEecC
Q 015140 10 NVRISFRLDHQVEFGEHVVILGSTKELGSWK--KNVPMKWSE-----SGWLCDLEFKGGESIEYKFVIVRNDKSKAWEAG 82 (412)
Q Consensus 10 ~v~V~F~I~yqT~~GE~V~VvGS~~eLGnWd--kAv~Ms~td-----g~W~veV~lp~gt~~EYKYvI~d~~g~veWE~G 82 (412)
++.|+|+|+++|.+||.|+|+||+++||+|+ +|++|.+++ +.|++++.+|.+..|+|||+|.+.++.+.||+|
T Consensus 1 ~v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i~~~~g~~~WE~g 80 (96)
T PF00686_consen 1 QVSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVIKDADGNVIWESG 80 (96)
T ss_dssp EEEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEEEETTSEEEE-SS
T ss_pred CEEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEEEeCCCCEEECCC
Confidence 5789999999999999999999999999999 999999973 399999999999999999999998888899999
Q ss_pred CCceEEcCCCCeEEE
Q 015140 83 DNRILKLPKGGSFEI 97 (412)
Q Consensus 83 ~NR~L~lp~~~s~~V 97 (412)
+||.+.+|.....++
T Consensus 81 ~nR~~~~~~~~~~~~ 95 (96)
T PF00686_consen 81 ENRVLTVPSSGSSTV 95 (96)
T ss_dssp SEEEEE--SSSEEEE
T ss_pred CCEEEECCCCCceeE
Confidence 999999998776554
No 5
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.83 E-value=3.5e-20 Score=151.58 Aligned_cols=90 Identities=36% Similarity=0.776 Sum_probs=84.0
Q ss_pred EEEEEEEeecCCCCEEEEEeCCCCcCCCC--ccccCeeeC-C-cEEEEEEecC--CceEEEEEEEEeCCCceEEecCCCc
Q 015140 12 RISFRLDHQVEFGEHVVILGSTKELGSWK--KNVPMKWSE-S-GWLCDLEFKG--GESIEYKFVIVRNDKSKAWEAGDNR 85 (412)
Q Consensus 12 ~V~F~I~yqT~~GE~V~VvGS~~eLGnWd--kAv~Ms~td-g-~W~veV~lp~--gt~~EYKYvI~d~~g~veWE~G~NR 85 (412)
.|+|+|.++|.+||+|+|+||+++||+|+ ++++|++++ + .|++++.+|. +..|+|||++.+.++.+.||.++||
T Consensus 1 ~v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~~~~~~~~~wE~~~~r 80 (96)
T cd05467 1 QVRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVIVDDDGNVQWESGSNR 80 (96)
T ss_pred CEEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEEECCCCCEEeccCCCe
Confidence 37999999999999999999999999999 999999998 6 9999999988 8899999999988777899999999
Q ss_pred eEEcCCCCeEEEEEEe
Q 015140 86 ILKLPKGGSFEIVCHW 101 (412)
Q Consensus 86 ~L~lp~~~s~~V~D~W 101 (412)
.+.+|..+.++|.|.|
T Consensus 81 ~~~~~~~~~~~i~d~w 96 (96)
T cd05467 81 VLTVPSTSSLIVVDDW 96 (96)
T ss_pred EEEcCCCCcEEEEeeC
Confidence 9999888888999988
No 6
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=99.82 E-value=8.8e-20 Score=153.39 Aligned_cols=95 Identities=29% Similarity=0.605 Sum_probs=83.9
Q ss_pred CCCeEEEEEEEEeecCCCCEEEEEeCCCCcCCCC--ccccCeee----CC-cEEEEEEecCCceEEEEEEEEeCCCceEE
Q 015140 7 HGGNVRISFRLDHQVEFGEHVVILGSTKELGSWK--KNVPMKWS----ES-GWLCDLEFKGGESIEYKFVIVRNDKSKAW 79 (412)
Q Consensus 7 ~~~~v~V~F~I~yqT~~GE~V~VvGS~~eLGnWd--kAv~Ms~t----dg-~W~veV~lp~gt~~EYKYvI~d~~g~veW 79 (412)
+..+|.|+|+|+++|.+||+|+|+||+++||+|+ ++++|++. ++ .|++++.+|.+..|+|||++.+.++.+.|
T Consensus 3 ~~~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~~~~~~~~~W 82 (106)
T cd05811 3 TATTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIRKESDGSVTW 82 (106)
T ss_pred CCCEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEEEcCCCcEEE
Confidence 3467999999999999999999999999999999 89999864 24 89999999998899999999887788899
Q ss_pred ecCCCceEEcCCCC--eEEEEEEe
Q 015140 80 EAGDNRILKLPKGG--SFEIVCHW 101 (412)
Q Consensus 80 E~G~NR~L~lp~~~--s~~V~D~W 101 (412)
|++.||.+.+|... ..+|.|.|
T Consensus 83 E~~~nr~~~~~~~~~~~~~~~~~~ 106 (106)
T cd05811 83 ESDPNRSYTVPSGCGTTATVDDSW 106 (106)
T ss_pred ecCCCeEEECCCCCCcceEEeccC
Confidence 99999999999743 56677765
No 7
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=99.81 E-value=1.5e-19 Score=151.17 Aligned_cols=90 Identities=36% Similarity=0.607 Sum_probs=79.9
Q ss_pred EEEEEEEeecCCCCEEEEEeCCCCcCCCC--ccccCeee---CC-cEEEEEEecCCceEEEEEEEEeCCCc-eEEecCCC
Q 015140 12 RISFRLDHQVEFGEHVVILGSTKELGSWK--KNVPMKWS---ES-GWLCDLEFKGGESIEYKFVIVRNDKS-KAWEAGDN 84 (412)
Q Consensus 12 ~V~F~I~yqT~~GE~V~VvGS~~eLGnWd--kAv~Ms~t---dg-~W~veV~lp~gt~~EYKYvI~d~~g~-veWE~G~N 84 (412)
+|+|+|.|+|.|||+|+|+||+++||+|+ ++++|++. ++ .|++++++|.+..|+|||+|++.++. +.||.|.|
T Consensus 1 ~l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v~~~~~~~~~wE~g~n 80 (101)
T cd05815 1 TLSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYVVDDRKSVLRSESGEK 80 (101)
T ss_pred CEEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEEEcCCCcEEEeecCCC
Confidence 48999999999999999999999999999 99999874 33 79999999988889999999876665 57999999
Q ss_pred ceEEcCCC----CeEEEEEEe
Q 015140 85 RILKLPKG----GSFEIVCHW 101 (412)
Q Consensus 85 R~L~lp~~----~s~~V~D~W 101 (412)
|.+.+|.+ ..|+|.|.|
T Consensus 81 r~~~~~~~~~~~~~~~i~d~w 101 (101)
T cd05815 81 RKLVLPEGLQGGESVELRDLW 101 (101)
T ss_pred EeEECCccccCCcEEEEeeeC
Confidence 99998863 378999998
No 8
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=99.80 E-value=3.3e-19 Score=149.47 Aligned_cols=93 Identities=28% Similarity=0.671 Sum_probs=83.2
Q ss_pred CeEEEEEEEE-eecCCCCEEEEEeCCCCcCCCC--ccccCeee----C-CcEEEEEEecCCceEEEEEEEEeCCCceEEe
Q 015140 9 GNVRISFRLD-HQVEFGEHVVILGSTKELGSWK--KNVPMKWS----E-SGWLCDLEFKGGESIEYKFVIVRNDKSKAWE 80 (412)
Q Consensus 9 ~~v~V~F~I~-yqT~~GE~V~VvGS~~eLGnWd--kAv~Ms~t----d-g~W~veV~lp~gt~~EYKYvI~d~~g~veWE 80 (412)
++|.|+|+|+ ++|.+||.|+|+||+++||+|+ +++.|.+. . +.|++++++|.+..|+|||++.+.++.+.||
T Consensus 1 ~~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~~~~~~~~~WE 80 (101)
T cd05807 1 DQVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIKKNGDNTVTWE 80 (101)
T ss_pred CcEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEEECCCCCEEEE
Confidence 3789999994 8999999999999999999999 88866532 2 4999999999999999999999888889999
Q ss_pred cCCCceEEcCCCCeEEEEEEe
Q 015140 81 AGDNRILKLPKGGSFEIVCHW 101 (412)
Q Consensus 81 ~G~NR~L~lp~~~s~~V~D~W 101 (412)
.|+||.+.+|..+..++.++|
T Consensus 81 ~g~nr~~~~p~~~~~~~~~~~ 101 (101)
T cd05807 81 SGSNHTYTAPSSTTGTIRVNW 101 (101)
T ss_pred eCCCEEEeCCCCCceEEEeeC
Confidence 999999999988777888887
No 9
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.79 E-value=7.2e-19 Score=145.57 Aligned_cols=92 Identities=26% Similarity=0.556 Sum_probs=80.9
Q ss_pred EEEEEEEEeecCCC-CEEEEEeCCCCcCCCCccccCeeeCC-cEEEEEEecCCceEEEEEEEEeCCCceEEecCCCceEE
Q 015140 11 VRISFRLDHQVEFG-EHVVILGSTKELGSWKKNVPMKWSES-GWLCDLEFKGGESIEYKFVIVRNDKSKAWEAGDNRILK 88 (412)
Q Consensus 11 v~V~F~I~yqT~~G-E~V~VvGS~~eLGnWdkAv~Ms~tdg-~W~veV~lp~gt~~EYKYvI~d~~g~veWE~G~NR~L~ 88 (412)
|.|+|+|++.|.+| |.|+|+||+++||+|+.+++|++.++ .|++++++|.+..|+|||++.++++.+.||.+.||.+.
T Consensus 1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~~~~~~~~~~WE~~~nr~~~ 80 (95)
T cd05813 1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFVLVENGQVTRWEECSNRLLE 80 (95)
T ss_pred CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEEEEcCCCEEEeecCCCeEEE
Confidence 57999999988876 77889999999999998899998876 99999999999899999999876555699999999998
Q ss_pred cCCCCeEEEEEEeCC
Q 015140 89 LPKGGSFEIVCHWNK 103 (412)
Q Consensus 89 lp~~~s~~V~D~W~~ 103 (412)
. ....|+|.|+|+.
T Consensus 81 ~-~~~~~~v~d~w~~ 94 (95)
T cd05813 81 T-GHEDKIVHKWWGC 94 (95)
T ss_pred c-CCceEEEehhccc
Confidence 3 3467999999974
No 10
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=99.78 E-value=1.1e-18 Score=147.41 Aligned_cols=94 Identities=28% Similarity=0.642 Sum_probs=83.4
Q ss_pred eEEEEEEEE--eecCCCCEEEEEeCCCCcCCCC--c--cc-cCeeeC-CcEEEEEEecCCceEEEEEEEEeCCCceEEec
Q 015140 10 NVRISFRLD--HQVEFGEHVVILGSTKELGSWK--K--NV-PMKWSE-SGWLCDLEFKGGESIEYKFVIVRNDKSKAWEA 81 (412)
Q Consensus 10 ~v~V~F~I~--yqT~~GE~V~VvGS~~eLGnWd--k--Av-~Ms~td-g~W~veV~lp~gt~~EYKYvI~d~~g~veWE~ 81 (412)
++.|+|+|+ .+|.+||+|+|+||+++||+|+ . ++ +|.+.. +.|++++++|.+..|||||++.+.++.+.||+
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v~~~~~g~v~WE~ 81 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFLKAPADGTGTWEG 81 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEEEECCCCCEEEEe
Confidence 578889886 6899999999999999999999 2 33 787655 49999999999999999999998888899999
Q ss_pred CCCceEEcCCCCeEEEEEEeCC
Q 015140 82 GDNRILKLPKGGSFEIVCHWNK 103 (412)
Q Consensus 82 G~NR~L~lp~~~s~~V~D~W~~ 103 (412)
|+||.+.+|..+..++.++|+.
T Consensus 82 g~Nr~~~~p~~~~~~~~~~w~~ 103 (103)
T cd05820 82 GSNHAYTTPSGGTGTVTVTWQR 103 (103)
T ss_pred CCCEeEECCCCCcEEEEEEecC
Confidence 9999999999888889999973
No 11
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.74 E-value=9e-18 Score=140.93 Aligned_cols=89 Identities=34% Similarity=0.749 Sum_probs=77.2
Q ss_pred EEEEEEEeecCCCCEEEEEeCCCCcCCCC--ccccCeeeCC-cEEEEEEecCCceEEEEEEEEeCC--CceEEecCCCce
Q 015140 12 RISFRLDHQVEFGEHVVILGSTKELGSWK--KNVPMKWSES-GWLCDLEFKGGESIEYKFVIVRND--KSKAWEAGDNRI 86 (412)
Q Consensus 12 ~V~F~I~yqT~~GE~V~VvGS~~eLGnWd--kAv~Ms~tdg-~W~veV~lp~gt~~EYKYvI~d~~--g~veWE~G~NR~ 86 (412)
.|+|+|.+.|.+||+|+|+||+++||+|+ ++++|+++++ .|++++.+|.+..|+|||+|.+.+ +.+.||.|.||.
T Consensus 1 ~v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~~~veYKY~i~~~~~~~~~~WE~g~nr~ 80 (100)
T cd05817 1 MVTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPESVYIEYKYFVSNYDDPNTVLWESGPNRV 80 (100)
T ss_pred CEEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCCCcEEEEEEEEecCCCCCeEecCCCCEE
Confidence 37899999999999999999999999999 9999999987 999999999988999999998643 568999999999
Q ss_pred EEcCCCCeEEEEEEeCCC
Q 015140 87 LKLPKGGSFEIVCHWNKT 104 (412)
Q Consensus 87 L~lp~~~s~~V~D~W~~~ 104 (412)
+.+.. ++.+.|...
T Consensus 81 ~~~~~----~~~~~~~~~ 94 (100)
T cd05817 81 LRTNH----QILLIWNHR 94 (100)
T ss_pred EEeCc----chhhhhhhh
Confidence 98753 344456543
No 12
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=99.73 E-value=2.1e-17 Score=138.50 Aligned_cols=92 Identities=28% Similarity=0.613 Sum_probs=78.7
Q ss_pred CeEEEEEEE-EeecCCCCEEEEEeCCCCcCCCC-cc--ccCee-eC-CcEEEEEEecCCceEEEEEEEEeCCC-ceEEec
Q 015140 9 GNVRISFRL-DHQVEFGEHVVILGSTKELGSWK-KN--VPMKW-SE-SGWLCDLEFKGGESIEYKFVIVRNDK-SKAWEA 81 (412)
Q Consensus 9 ~~v~V~F~I-~yqT~~GE~V~VvGS~~eLGnWd-kA--v~Ms~-td-g~W~veV~lp~gt~~EYKYvI~d~~g-~veWE~ 81 (412)
++|.|+|+| +++|.+||.|+|+||+++||+|+ .+ +.|.. +. +.|++++++|.+..|+|||++++.++ .+.||+
T Consensus 1 ~~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~~~~~~~~~~WE~ 80 (99)
T cd05809 1 TPVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIKKSKDGTNKSWQG 80 (99)
T ss_pred CceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEEEcCCCCeeEEec
Confidence 368999999 68999999999999999999999 43 43433 33 49999999999999999999998877 689999
Q ss_pred CCCceEEcCCCCeEEEEEEe
Q 015140 82 GDNRILKLPKGGSFEIVCHW 101 (412)
Q Consensus 82 G~NR~L~lp~~~s~~V~D~W 101 (412)
|+||.+.+|. +..++.+.|
T Consensus 81 g~nr~~~~p~-~~~~~~~~~ 99 (99)
T cd05809 81 GQQSWYPVPL-GTTSYTSSW 99 (99)
T ss_pred CCCeeEECCC-CccEEEeeC
Confidence 9999999998 566777776
No 13
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=99.71 E-value=4.2e-17 Score=136.47 Aligned_cols=79 Identities=32% Similarity=0.618 Sum_probs=72.4
Q ss_pred EEEEEEe-ecCCCCEEEEEeCCCCcCCCC--ccccCeeeCC-cEEEEEEecCCc-eEEEEEEEEeCC-CceEEecCCCce
Q 015140 13 ISFRLDH-QVEFGEHVVILGSTKELGSWK--KNVPMKWSES-GWLCDLEFKGGE-SIEYKFVIVRND-KSKAWEAGDNRI 86 (412)
Q Consensus 13 V~F~I~y-qT~~GE~V~VvGS~~eLGnWd--kAv~Ms~tdg-~W~veV~lp~gt-~~EYKYvI~d~~-g~veWE~G~NR~ 86 (412)
|+|+|.+ ++.+||+|+|+||+++||+|+ ++++|++.++ .|++++.+|.+. .|+|||++.+++ +.+.||.|.||.
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi~~~~~~~~~WE~g~nr~ 81 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYIIANKDSGVVSWENGPNRE 81 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEEEeCCCCcEEEEcCCCeE
Confidence 7888864 789999999999999999999 9999999887 999999998764 899999999887 788999999999
Q ss_pred EEcCC
Q 015140 87 LKLPK 91 (412)
Q Consensus 87 L~lp~ 91 (412)
+.+|.
T Consensus 82 ~~~p~ 86 (99)
T cd05816 82 LSAPS 86 (99)
T ss_pred EECCc
Confidence 99987
No 14
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.70 E-value=6.5e-17 Score=135.59 Aligned_cols=83 Identities=19% Similarity=0.490 Sum_probs=74.8
Q ss_pred EEEEEEE-EeecCCCCEEEEEeCCCCcCCCC--ccccCeeeCC-cEEEEEEecCCceEEEEEEEEeCCC---ceEEecCC
Q 015140 11 VRISFRL-DHQVEFGEHVVILGSTKELGSWK--KNVPMKWSES-GWLCDLEFKGGESIEYKFVIVRNDK---SKAWEAGD 83 (412)
Q Consensus 11 v~V~F~I-~yqT~~GE~V~VvGS~~eLGnWd--kAv~Ms~tdg-~W~veV~lp~gt~~EYKYvI~d~~g---~veWE~G~ 83 (412)
|.|+|.+ +++|.+||.|+|+|++++||+|+ ++++|.+... .|++++++|.+..|+|||++.+.++ .+.||.|+
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~~~~~~~~~~v~WE~g~ 80 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLKRNETNPTAGVQWQGGG 80 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEEEcCCCCcceEEEeeCC
Confidence 4689996 58999999999999999999999 9999998875 8999999999999999999987764 47999999
Q ss_pred CceEEcCCCC
Q 015140 84 NRILKLPKGG 93 (412)
Q Consensus 84 NR~L~lp~~~ 93 (412)
||.+.+|...
T Consensus 81 Nr~~~~p~~~ 90 (97)
T cd05810 81 NNQLTTGNST 90 (97)
T ss_pred CEEEeCCCCC
Confidence 9999999753
No 15
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.51 E-value=5e-14 Score=121.86 Aligned_cols=78 Identities=28% Similarity=0.589 Sum_probs=67.1
Q ss_pred EEEEEEEe-ecCCCCEEEEEeCCCCcCCCC--ccccCeee--CC-cEEEEEEecCCceEEEEEEEEeC----CC--ce--
Q 015140 12 RISFRLDH-QVEFGEHVVILGSTKELGSWK--KNVPMKWS--ES-GWLCDLEFKGGESIEYKFVIVRN----DK--SK-- 77 (412)
Q Consensus 12 ~V~F~I~y-qT~~GE~V~VvGS~~eLGnWd--kAv~Ms~t--dg-~W~veV~lp~gt~~EYKYvI~d~----~g--~v-- 77 (412)
.|+|+|.+ +|.+||+|+|+|++++||+|+ ++++|++. ++ .|++++.+|.+..|+|||+++.. ++ .+
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~~~~~~~~~~~~~~~ 81 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVAVVLNDSGPCQVIVR 81 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEEEeccCCCCccEEEe
Confidence 68999988 999999999999999999999 99999987 54 99999999998899999999763 22 24
Q ss_pred EEecCCC-ceEEc
Q 015140 78 AWEAGDN-RILKL 89 (412)
Q Consensus 78 eWE~G~N-R~L~l 89 (412)
.||++.| |.+.+
T Consensus 82 ~WE~~~~~R~~~~ 94 (120)
T cd05814 82 KWETHLQPRSIKP 94 (120)
T ss_pred eccCCCCccEecc
Confidence 8999988 55543
No 16
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=99.51 E-value=1e-13 Score=120.20 Aligned_cols=80 Identities=28% Similarity=0.515 Sum_probs=68.9
Q ss_pred EEEEEEEEe-ecCCCCEEEEEeCCCCcCCCC--ccccCeee-------CC-cEEEEEEecCC---ceEEEEEEEEeCCCc
Q 015140 11 VRISFRLDH-QVEFGEHVVILGSTKELGSWK--KNVPMKWS-------ES-GWLCDLEFKGG---ESIEYKFVIVRNDKS 76 (412)
Q Consensus 11 v~V~F~I~y-qT~~GE~V~VvGS~~eLGnWd--kAv~Ms~t-------dg-~W~veV~lp~g---t~~EYKYvI~d~~g~ 76 (412)
|+|+|.|.. .|.+||+|+|+||+++||+|+ +|++|++. .+ .|++++++|.+ ..|+|||++.+ ++.
T Consensus 1 ~~~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~~~-~~~ 79 (112)
T cd05806 1 MLFRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLKRE-AGA 79 (112)
T ss_pred CEEEEEEEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEEeC-CCe
Confidence 679999975 999999999999999999999 99999975 44 79999999885 48999999876 567
Q ss_pred eEEe---cCCCceEEcCC
Q 015140 77 KAWE---AGDNRILKLPK 91 (412)
Q Consensus 77 veWE---~G~NR~L~lp~ 91 (412)
+.|| ..+||.+.+..
T Consensus 80 v~WE~~~~~~nr~~~~~~ 97 (112)
T cd05806 80 LIWEGNGPHHDRCCVYDS 97 (112)
T ss_pred eEEecCCCCCCeEEeccc
Confidence 8999 55788877654
No 17
>PLN02950 4-alpha-glucanotransferase
Probab=99.43 E-value=4.5e-13 Score=149.48 Aligned_cols=86 Identities=23% Similarity=0.484 Sum_probs=77.9
Q ss_pred CCCeEEEEEEEEe-ecCCCCEEEEEeCCCCcCCCC--ccccCeeeCC-cEEEEEEecCCc-eEEEEEEEEeCCCceEEec
Q 015140 7 HGGNVRISFRLDH-QVEFGEHVVILGSTKELGSWK--KNVPMKWSES-GWLCDLEFKGGE-SIEYKFVIVRNDKSKAWEA 81 (412)
Q Consensus 7 ~~~~v~V~F~I~y-qT~~GE~V~VvGS~~eLGnWd--kAv~Ms~tdg-~W~veV~lp~gt-~~EYKYvI~d~~g~veWE~ 81 (412)
.+..|.|+|+|.+ +|.+||+|+|+||+++||+|+ ++++|++.+. .|++++++|.+. +|+|||++++.++.+.||.
T Consensus 149 ~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~WE~ 228 (909)
T PLN02950 149 APDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSLEL 228 (909)
T ss_pred CCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCCCceEEee
Confidence 3456899999965 689999999999999999999 9999998775 999999998874 8999999999888899999
Q ss_pred CCCceEEcCCC
Q 015140 82 GDNRILKLPKG 92 (412)
Q Consensus 82 G~NR~L~lp~~ 92 (412)
|+||.+.+|..
T Consensus 229 g~NR~~~~p~~ 239 (909)
T PLN02950 229 GVNRELSLDSS 239 (909)
T ss_pred CCCceeecCcc
Confidence 99999999974
No 18
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=97.56 E-value=0.00035 Score=56.65 Aligned_cols=53 Identities=32% Similarity=0.650 Sum_probs=44.0
Q ss_pred EEEEEEEEeecCCCCEEEEEeCCCCcCCCCccccCeeeCCcEEEEEEecCCceEEEEEEE
Q 015140 11 VRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSESGWLCDLEFKGGESIEYKFVI 70 (412)
Q Consensus 11 v~V~F~I~yqT~~GE~V~VvGS~~eLGnWdkAv~Ms~tdg~W~veV~lp~gt~~EYKYvI 70 (412)
+.|+|+... .+++|.|+|+ .-+|+..++|....+.|++.+.+|.| .++|||+|
T Consensus 2 ~~v~f~~~~---~a~~V~v~G~---F~~W~~~~pm~~~~~~~~~~~~L~~g-~y~YkF~V 54 (79)
T cd02859 2 VPTTFVWPG---GGKEVYVTGS---FDNWKKKIPLEKSGKGFSATLRLPPG-KYQYKFIV 54 (79)
T ss_pred eEEEEEEcC---CCcEEEEEEE---cCCCCccccceECCCCcEEEEEcCCC-CEEEEEEE
Confidence 467776644 7899999997 57898679999877679999999987 59999987
No 19
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.01 E-value=0.0029 Score=51.09 Aligned_cols=54 Identities=30% Similarity=0.648 Sum_probs=41.2
Q ss_pred EEEEEEEEeecCCCCEEEEEeCCCCcCCCCccccCeeeC-CcEEEEEEecCCceEEEEEEEE
Q 015140 11 VRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSE-SGWLCDLEFKGGESIEYKFVIV 71 (412)
Q Consensus 11 v~V~F~I~yqT~~GE~V~VvGS~~eLGnWdkAv~Ms~td-g~W~veV~lp~gt~~EYKYvI~ 71 (412)
+.++|++... .-+.|+|+|+ +.+|+ .++|...+ |.|++++.++.|+ ++|||+|.
T Consensus 2 ~~vtf~~~ap--~a~~V~v~G~---fn~W~-~~~m~~~~~G~w~~~~~l~~G~-y~Ykf~vd 56 (82)
T cd02861 2 VPVVFAYRGP--EADSVYLAGS---FNNWN-AIPMEREGDGLWVVTVELRPGR-YEYKFVVD 56 (82)
T ss_pred ccEEEEEECC--CCCEEEEEeE---CCCCC-cccCEECCCCcEEEEEeCCCCc-EEEEEEEC
Confidence 3567776322 2289999998 56785 67898766 6999999998887 89999883
No 20
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=94.64 E-value=0.016 Score=48.01 Aligned_cols=38 Identities=24% Similarity=0.484 Sum_probs=30.6
Q ss_pred cccccccCCCCccCCCCCCcceeeecCCCccccccccccc
Q 015140 129 PDALLEVGTSPFVGQWQGKSASFMRADDHWNREMERKWDT 168 (412)
Q Consensus 129 ~~~L~l~Gss~~LG~W~~~kA~~M~~~n~~~~~~~~~wdt 168 (412)
++.++++|+.+.||+|+.++|+.|..++. ......|..
T Consensus 15 ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~--~~~~~~W~~ 52 (96)
T PF00686_consen 15 GESVYIVGSCPELGNWDPKKAVPLQWNEG--TENYPIWSA 52 (96)
T ss_dssp TEEEEEEESSGGGTTTSGGGSBESEBESS--SSTTTSEEE
T ss_pred CCEEEEEECcHHhCCCChHhccccccccC--CCCCCeEEE
Confidence 78899999999999999999999998764 112345765
No 21
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=93.56 E-value=0.026 Score=47.19 Aligned_cols=28 Identities=25% Similarity=0.649 Sum_probs=25.9
Q ss_pred cccccccCCCCccCCCCCCcceeeecCC
Q 015140 129 PDALLEVGTSPFVGQWQGKSASFMRADD 156 (412)
Q Consensus 129 ~~~L~l~Gss~~LG~W~~~kA~~M~~~n 156 (412)
++.++++|+++.||+|+.++|+.|+.++
T Consensus 13 Ge~l~v~G~~~~LG~W~~~~a~~m~~~~ 40 (101)
T cd05815 13 GQSLLICGSDPLLGSWNVKKGLLLKPSH 40 (101)
T ss_pred CCEEEEEcChHHcCCcChHhcEeeeecC
Confidence 7888999999999999999999998864
No 22
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=92.76 E-value=0.74 Score=39.08 Aligned_cols=57 Identities=21% Similarity=0.413 Sum_probs=39.7
Q ss_pred EEEEEEeecCCCCEEEEEeCCCCcCCCC-ccccCeeeC-CcEEEEEEe--------cCCceEEEEEEEEeCCCc
Q 015140 13 ISFRLDHQVEFGEHVVILGSTKELGSWK-KNVPMKWSE-SGWLCDLEF--------KGGESIEYKFVIVRNDKS 76 (412)
Q Consensus 13 V~F~I~yqT~~GE~V~VvGS~~eLGnWd-kAv~Ms~td-g~W~veV~l--------p~gt~~EYKYvI~d~~g~ 76 (412)
++|++ ...--++|.|+|+ +.+|+ ...+|.-.+ |.|++.+.. +.| -.|||.|...++.
T Consensus 7 ~~Frv--wAP~A~~V~l~Gd---Fn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g--~~Yky~i~~~~G~ 73 (99)
T cd02854 7 VTYRE--WAPNAEEVYLIGD---FNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHG--SKIKVRMVTPSGE 73 (99)
T ss_pred EEEEE--ECCCCCEEEEEcc---CCCCCCcCcccEECCCCEEEEEECCcccccccCCCC--CEEEEEEEeCCCC
Confidence 45655 3345679999986 57898 678898654 599988763 233 4799998764443
No 23
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=92.70 E-value=0.04 Score=44.91 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=25.6
Q ss_pred cccccccCCCCccCCCCCCcceeeecCC
Q 015140 129 PDALLEVGTSPFVGQWQGKSASFMRADD 156 (412)
Q Consensus 129 ~~~L~l~Gss~~LG~W~~~kA~~M~~~n 156 (412)
++.+.++|+++.||+|+..+|+.|+.++
T Consensus 13 Ge~l~v~G~~~~LG~W~~~~a~~m~~~~ 40 (96)
T cd05467 13 GQSVYVVGSHPELGNWDPAKALRLNTSN 40 (96)
T ss_pred CCEEEEEeCcHHhCCcChhcCccccCCC
Confidence 6788999999999999999999998765
No 24
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=92.60 E-value=0.037 Score=45.32 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=24.9
Q ss_pred cccccccCCCCccCCCCCCcceeeecCC
Q 015140 129 PDALLEVGTSPFVGQWQGKSASFMRADD 156 (412)
Q Consensus 129 ~~~L~l~Gss~~LG~W~~~kA~~M~~~n 156 (412)
++.++++|+++.||+|+..+|++|+...
T Consensus 14 ge~l~v~G~~~~lG~W~~~~a~~l~~~~ 41 (95)
T cd05808 14 GQNVYVVGNVPELGNWSPANAVALSAAT 41 (95)
T ss_pred CCEEEEEeCcHHhCCCChhhCccCCCCC
Confidence 6778899999999999999999997654
No 25
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=92.51 E-value=0.044 Score=46.06 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=25.6
Q ss_pred cccccccCCCCccCCCCCCcceeeecCC
Q 015140 129 PDALLEVGTSPFVGQWQGKSASFMRADD 156 (412)
Q Consensus 129 ~~~L~l~Gss~~LG~W~~~kA~~M~~~n 156 (412)
++.++++|+++.||+|+.++|++|+.++
T Consensus 13 Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~ 40 (100)
T cd05817 13 GEAVYISGNCNQLGNWNPSKAKRMQWNE 40 (100)
T ss_pred CCEEEEEeCcHHHCCCCccccCcccCCC
Confidence 6788999999999999999999997655
No 26
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=92.38 E-value=0.59 Score=37.12 Aligned_cols=58 Identities=22% Similarity=0.430 Sum_probs=40.7
Q ss_pred EEEEEEEeecCCCCEEEEEeCCCCcCCCC-ccccCee-eC-CcEEEEEE--ecCCceEEEEEEEEeCC
Q 015140 12 RISFRLDHQVEFGEHVVILGSTKELGSWK-KNVPMKW-SE-SGWLCDLE--FKGGESIEYKFVIVRND 74 (412)
Q Consensus 12 ~V~F~I~yqT~~GE~V~VvGS~~eLGnWd-kAv~Ms~-td-g~W~veV~--lp~gt~~EYKYvI~d~~ 74 (412)
.++|++ ...--+.|.|++.... +|. ..++|.. .+ |.|++++. ++.| .+.|+|.|...+
T Consensus 12 ~~~F~v--waP~A~~V~l~~~~~~--~~~~~~~~m~~~~~~G~w~~~~~~~~~~g-~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 12 GVTFRV--WAPNAKSVELVLYFNG--SWPAEEYPMTRKDDDGVWEVTVPGDLPPG-GYYYKYRIDGDD 74 (85)
T ss_dssp EEEEEE--E-TTESEEEEEEETTT--SSEEEEEEEEEECTTTEEEEEEEGCGTTT-T-EEEEEEEETT
T ss_pred EEEEEE--ECCCCCEEEEEEEeee--cCCCceEEeeecCCCCEEEEEEcCCcCCC-CEEEEEEEEeCC
Confidence 344544 2234578999998777 788 8899994 44 59999998 4544 378999998765
No 27
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=91.24 E-value=0.069 Score=44.75 Aligned_cols=35 Identities=20% Similarity=0.440 Sum_probs=29.0
Q ss_pred cccccccCCCCccCCCCCCcceeeecCCCcccccccccccc
Q 015140 129 PDALLEVGTSPFVGQWQGKSASFMRADDHWNREMERKWDTS 169 (412)
Q Consensus 129 ~~~L~l~Gss~~LG~W~~~kA~~M~~~n~~~~~~~~~wdt~ 169 (412)
+++++++|+.+.||+|+.++|++|+... ...|-++
T Consensus 14 Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~------~~~W~~~ 48 (99)
T cd05816 14 GQSVYVTGSSPELGNWDPQKALKLSDVG------FPIWEAD 48 (99)
T ss_pred CCEEEEEEChHHhCCCCccccccCCCCC------CCcEEEE
Confidence 7788999999999999999999997654 3457654
No 28
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=91.05 E-value=0.075 Score=46.12 Aligned_cols=29 Identities=28% Similarity=0.585 Sum_probs=26.0
Q ss_pred ccccccccCCCCccCCCCCCcceeeecCC
Q 015140 128 APDALLEVGTSPFVGQWQGKSASFMRADD 156 (412)
Q Consensus 128 l~~~L~l~Gss~~LG~W~~~kA~~M~~~n 156 (412)
.++.++++|+.+.||+|+.++|++|+.++
T Consensus 14 ~ge~v~v~G~~~~LG~W~~~~a~~l~~~~ 42 (120)
T cd05814 14 PGEVVAVVGSLPVLGNWQPEKAVPLEKED 42 (120)
T ss_pred CCCEEEEEeChHHhCCCCHHhCeeCccCC
Confidence 37788999999999999999999998773
No 29
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=90.11 E-value=0.12 Score=45.28 Aligned_cols=28 Identities=32% Similarity=0.578 Sum_probs=25.5
Q ss_pred cccccccCCCCccCCCCCCcceeeecCC
Q 015140 129 PDALLEVGTSPFVGQWQGKSASFMRADD 156 (412)
Q Consensus 129 ~~~L~l~Gss~~LG~W~~~kA~~M~~~n 156 (412)
++.+.++|+.+.||+|+.++|+.|+.+.
T Consensus 15 gq~v~IvGsipeLG~Wd~~~Av~Ls~~~ 42 (112)
T cd05806 15 DTELLVLGSRPELGSWDPQRAVPMRPAR 42 (112)
T ss_pred CCEEEEEECchhcCCCCccccccccccc
Confidence 5677899999999999999999999874
No 30
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=88.95 E-value=0.13 Score=43.20 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=30.0
Q ss_pred ccccccccCCCCccCCCCCCcceeeecCCCcccccccccccc
Q 015140 128 APDALLEVGTSPFVGQWQGKSASFMRADDHWNREMERKWDTS 169 (412)
Q Consensus 128 l~~~L~l~Gss~~LG~W~~~kA~~M~~~n~~~~~~~~~wdt~ 169 (412)
.++.++++|+++.||+|+..+|+.|+.+...+. +..|..+
T Consensus 19 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~--~~~W~~~ 58 (106)
T cd05811 19 YGENIKIVGSIPQLGNWDTSSAVALSASQYTSS--NPLWSVT 58 (106)
T ss_pred CCCeEEEEeCcHHHCCCChhhCcccccccCccC--CCcEEEE
Confidence 377889999999999999999999976542221 2357554
No 31
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=88.73 E-value=0.13 Score=43.20 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=25.7
Q ss_pred ccccccccCCCCccCCCCCCcceeeecCC
Q 015140 128 APDALLEVGTSPFVGQWQGKSASFMRADD 156 (412)
Q Consensus 128 l~~~L~l~Gss~~LG~W~~~kA~~M~~~n 156 (412)
.++.++++|+.+.||+|+..+|+.|+.++
T Consensus 14 ~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~ 42 (97)
T cd05810 14 LGQSVYVVGNVPQLGNWSPADAVKLDPTA 42 (97)
T ss_pred CCCeEEEEEChHHhCCCChhhcccccCCC
Confidence 36788899999999999999999997764
No 32
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=88.08 E-value=2.5 Score=34.51 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=35.7
Q ss_pred EEEEEEEeecCCCCEEEEEeCCCCcCCCCccccCeeeC-CcEEEEEEecCCceEEEEEEEE
Q 015140 12 RISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSE-SGWLCDLEFKGGESIEYKFVIV 71 (412)
Q Consensus 12 ~V~F~I~yqT~~GE~V~VvGS~~eLGnWdkAv~Ms~td-g~W~veV~lp~gt~~EYKYvI~ 71 (412)
.++|++-.. .-++|.|+|+.. +| ..++|...+ |.|++++....+....|+|.+.
T Consensus 7 ~v~F~vwAP--~A~~V~L~~~~~---~~-~~~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~vd 61 (85)
T cd02858 7 TVTFRLFAP--KANEVQVRGSWG---GA-GSHPMTKDEAGVWSVTTGPLAPGIYTYSFLVD 61 (85)
T ss_pred cEEEEEECC--CCCEEEEEeecC---CC-ccEeCeECCCeEEEEEECCCCCcEEEEEEEEC
Confidence 467777322 348999999753 34 567898765 5999988432334467888763
No 33
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=87.23 E-value=0.68 Score=48.84 Aligned_cols=64 Identities=23% Similarity=0.465 Sum_probs=50.2
Q ss_pred EEEEEEE--EeecCCCCEEEEEeCCCCcCCCC--ccccCeeeCC-------cEEEEEEecCCceEEEEEEEEeCC
Q 015140 11 VRISFRL--DHQVEFGEHVVILGSTKELGSWK--KNVPMKWSES-------GWLCDLEFKGGESIEYKFVIVRND 74 (412)
Q Consensus 11 v~V~F~I--~yqT~~GE~V~VvGS~~eLGnWd--kAv~Ms~tdg-------~W~veV~lp~gt~~EYKYvI~d~~ 74 (412)
+...|.+ +....+++.++++|+++.||+|+ .+.+++..+. .|.+.+.+|..-.++|.|.|...+
T Consensus 44 ~~~~~~v~~n~~~~~~~~~~~vg~~~~lg~f~~~~~~pls~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~ 118 (417)
T KOG2421|consen 44 VIGHFGVGKNQLLYPDEYVAVVGENSALGNFNSAAALPLSFIEFDVQRTNRDWVAPVIIPRNIVIEYRYGITSED 118 (417)
T ss_pred eecccccceecccCCcceeEeecccccccccchhhhcCccccchheeeeeccccceeEeccccccccceeeeecC
Confidence 3444444 34566999999999999999999 8888886652 377788888877899999998765
No 34
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only]
Probab=85.79 E-value=0.93 Score=43.45 Aligned_cols=63 Identities=29% Similarity=0.304 Sum_probs=51.4
Q ss_pred hHHHHHHHHHhhhhcccCCcchhHHHHHHHhhh-------hcCCCC--CcHHHHHHHHHHHHHHHhhhccCChHHH
Q 015140 304 DLKLEIKHTIQNKLHRNAGPEDLVATEAMLAKI-------TKNPGE--YSESFVEQFKMFHSELKDFFNAGSLAEQ 370 (412)
Q Consensus 304 dlk~eikhtiqnklhr~agpedl~ate~~l~r~-------~~~~g~--y~~~fv~ef~~f~~elk~ffna~~~~~~ 370 (412)
++-++|..+|||-=+=---||+|+.||.|+.=. .+-||+ ||.+|.++- +|++=|-|--.+.+|
T Consensus 39 e~lksi~s~lQ~lrY~Yl~peel~~~e~~~~l~~~a~~ive~l~~ekdw~~~~l~~a----~ev~fflnt~~~ldR 110 (219)
T COG2517 39 EALKSIESELQALRYSYLEPEELVDTEQMKDLKEKAEGIVEALGGEKDWSTKFLEQA----DEVRFFLNTILNLDR 110 (219)
T ss_pred HHHHHHHHHHHhheeeccCHHHhcccHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH----HHHHHHHhchhhccc
Confidence 566799999999988899999999999998643 346776 999999997 777767676666555
No 35
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=85.77 E-value=5.4 Score=33.08 Aligned_cols=67 Identities=12% Similarity=0.332 Sum_probs=35.3
Q ss_pred CeEEEEEEEEeecC--CCCEEEEEeCCCCcCCCC--ccccCeeeC-----CcEEEEEEecCCc-eEEEEEEEEeCCCceE
Q 015140 9 GNVRISFRLDHQVE--FGEHVVILGSTKELGSWK--KNVPMKWSE-----SGWLCDLEFKGGE-SIEYKFVIVRNDKSKA 78 (412)
Q Consensus 9 ~~v~V~F~I~yqT~--~GE~V~VvGS~~eLGnWd--kAv~Ms~td-----g~W~veV~lp~gt-~~EYKYvI~d~~g~ve 78 (412)
.+|+|.++-. .+. --++|++-+. .++|. ..+.|.... +.|+++|.+|... .++|-| .+. .-.
T Consensus 2 ~~vtVyYn~~-~~~l~g~~~v~~~~G---~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF--~dg--~~~ 73 (87)
T PF03423_consen 2 ETVTVYYNPS-LTALSGAPNVHLHGG---FNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVF--NDG--AGN 73 (87)
T ss_dssp SEEEEEE----E-SSS-S-EEEEEET---TS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEE--E-S--SS-
T ss_pred CEEEEEEEeC-CCCCCCCCcEEEEec---CCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEE--cCC--CCc
Confidence 4677777552 233 2468888887 57898 678887654 4999999998764 455544 433 346
Q ss_pred EecCC
Q 015140 79 WEAGD 83 (412)
Q Consensus 79 WE~G~ 83 (412)
|++..
T Consensus 74 wDNN~ 78 (87)
T PF03423_consen 74 WDNNN 78 (87)
T ss_dssp EESTT
T ss_pred EeCCC
Confidence 86643
No 36
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=85.31 E-value=5.3 Score=30.53 Aligned_cols=57 Identities=21% Similarity=0.347 Sum_probs=39.3
Q ss_pred EEEEEEEeecCCCCEEEEEeCCCCcCCCCccccCeeeC-CcEEEEEEecCCceEEEEEEEEeC
Q 015140 12 RISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSE-SGWLCDLEFKGGESIEYKFVIVRN 73 (412)
Q Consensus 12 ~V~F~I~yqT~~GE~V~VvGS~~eLGnWdkAv~Ms~td-g~W~veV~lp~gt~~EYKYvI~d~ 73 (412)
.++|.+- ..-++.|.|+++.+. |...++|.... |.|++++..+......|+|.+...
T Consensus 5 ~v~f~v~--ap~a~~v~l~~~~~~---~~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~~ 62 (83)
T cd02688 5 GVTFTVR--GPKAQRVSLAGSFNG---DTQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDGG 62 (83)
T ss_pred cEEEEEE--CCCCCEEEEEEEECC---CCCcccCEECCCceEEEEEcCCCCCCeEEEEEEeCC
Confidence 3566663 234489999998543 44677888766 599999987551236899988754
No 37
>COG3943 Virulence protein [General function prediction only]
Probab=84.96 E-value=0.42 Score=47.42 Aligned_cols=29 Identities=28% Similarity=0.261 Sum_probs=19.8
Q ss_pred HHHHHHhhhhcccCCcchhHHHHHHHhhhhc
Q 015140 308 EIKHTIQNKLHRNAGPEDLVATEAMLAKITK 338 (412)
Q Consensus 308 eikhtiqnklhr~agpedl~ate~~l~r~~~ 338 (412)
..=||||||||+.+-- --|.|-+-+|--+
T Consensus 174 rFFatvQNKLH~A~tg--qTAAElih~RADa 202 (329)
T COG3943 174 RFFATVQNKLHFACTG--QTAAELIHQRADA 202 (329)
T ss_pred HHHHHHHHHHHHHhcc--ccHHHHHHHhhcc
Confidence 4569999999995532 2466777777554
No 38
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=80.78 E-value=9 Score=32.91 Aligned_cols=68 Identities=22% Similarity=0.376 Sum_probs=42.7
Q ss_pred CCeEEEEEEEEeecCCCCEEEE-EeCCCCc-CCCC-ccccCeeeC--C---cEEEEEEecCCceEEEEEEEEeCCCceEE
Q 015140 8 GGNVRISFRLDHQVEFGEHVVI-LGSTKEL-GSWK-KNVPMKWSE--S---GWLCDLEFKGGESIEYKFVIVRNDKSKAW 79 (412)
Q Consensus 8 ~~~v~V~F~I~yqT~~GE~V~V-vGS~~eL-GnWd-kAv~Ms~td--g---~W~veV~lp~gt~~EYKYvI~d~~g~veW 79 (412)
+.++.|+|++...= =++|.| .|+.-.. +.|. +.++|.... + .|+++|.++.. .+.|.|.|.+ ++...|
T Consensus 20 ~~~l~IRLRt~k~D--v~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~-r~~Y~F~l~~-~~~~~~ 95 (120)
T PF02903_consen 20 GDTLHIRLRTAKND--VEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEK-RLRYYFELED-GGETYY 95 (120)
T ss_dssp TTEEEEEEEEETTT---SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTS-EEEEEEEEEE-TTEEEE
T ss_pred CCEEEEEEEecCCC--CCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCC-eEEEEEEEEe-CCEEEE
Confidence 34567777663211 235555 4565544 4566 788887543 3 89999988765 5999999988 555545
No 39
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=80.09 E-value=0.67 Score=38.30 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=21.1
Q ss_pred cccccccCCCCccCCCCCCcceeeecCC
Q 015140 129 PDALLEVGTSPFVGQWQGKSASFMRADD 156 (412)
Q Consensus 129 ~~~L~l~Gss~~LG~W~~~kA~~M~~~n 156 (412)
++.++++|+++.||+|+. +.+|+.++
T Consensus 15 ~e~l~v~G~~~~LG~W~~--~~~l~~~~ 40 (95)
T cd05813 15 AQLVAVTGDHEELGSWHS--YIPLQYVK 40 (95)
T ss_pred CeEEEEEcChHHHCCCCc--cccCcCCC
Confidence 456779999999999995 78886554
No 40
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=79.88 E-value=0.64 Score=38.59 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=21.4
Q ss_pred cccccccCCCCccCCCCCCcceeeecC
Q 015140 129 PDALLEVGTSPFVGQWQGKSASFMRAD 155 (412)
Q Consensus 129 ~~~L~l~Gss~~LG~W~~~kA~~M~~~ 155 (412)
++.++++|+++.||+|+ +++.|+.+
T Consensus 15 Gq~l~v~G~~~~LG~W~--~~~~l~~~ 39 (92)
T cd05818 15 GEHVAILGSTKELGSWK--KKVPMNWT 39 (92)
T ss_pred CCEEEEEeChHHHCCCC--CCCccccC
Confidence 67788999999999999 56788765
No 41
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=79.70 E-value=0.51 Score=39.59 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.6
Q ss_pred cccccccCCCCccCCCCCCcceeeec
Q 015140 129 PDALLEVGTSPFVGQWQGKSASFMRA 154 (412)
Q Consensus 129 ~~~L~l~Gss~~LG~W~~~kA~~M~~ 154 (412)
++.+.++|+.+.||+|+..+|+.|..
T Consensus 17 Gq~l~v~Gs~~~LG~W~~~~a~~~~~ 42 (101)
T cd05807 17 GENVYLVGNVHELGNWDPSKAIGPFF 42 (101)
T ss_pred CCEEEEEECHHHHCCCChHHcccccc
Confidence 77888999999999999999985543
No 42
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=70.63 E-value=2.9 Score=38.75 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=31.9
Q ss_pred cccccccchhccccccCCCChhHHHHHHHHHhhh
Q 015140 283 FTASVPLTRIRDIAHRNDIPHDLKLEIKHTIQNK 316 (412)
Q Consensus 283 ft~~~pltrirdiahr~dip~dlk~eikhtiqnk 316 (412)
+|..||=.-|-.|-+-+++|.+.|++|++-|++|
T Consensus 106 ~tr~vs~~ai~~iL~~p~V~~~~K~~i~~i~~~K 139 (155)
T PF10777_consen 106 NTRFVSDQAIDKILQSPQVPDEIKQGIQRIISTK 139 (155)
T ss_pred eeccCCHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 5678999999999999999999999999999998
No 43
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=68.02 E-value=2 Score=36.42 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=21.8
Q ss_pred ccccccccCCCCccCCCCCCc--ce-eeec
Q 015140 128 APDALLEVGTSPFVGQWQGKS--AS-FMRA 154 (412)
Q Consensus 128 l~~~L~l~Gss~~LG~W~~~k--A~-~M~~ 154 (412)
.++.++++|+.+.||+|+... |+ +|+.
T Consensus 17 ~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~ 46 (103)
T cd05820 17 PGEFLYLTGSVPELGNWSTSTDQAVGPLLC 46 (103)
T ss_pred CCCEEEEEECcHHhCCCChhcccccccccc
Confidence 377889999999999999865 33 7764
No 44
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=66.43 E-value=13 Score=37.43 Aligned_cols=54 Identities=33% Similarity=0.684 Sum_probs=40.6
Q ss_pred CCEEEEEeCCCCcCCCCccccCeeeCC---cEEEEEEecCCceEEEEEEEEeCCCceEEecCCCce
Q 015140 24 GEHVVILGSTKELGSWKKNVPMKWSES---GWLCDLEFKGGESIEYKFVIVRNDKSKAWEAGDNRI 86 (412)
Q Consensus 24 GE~V~VvGS~~eLGnWdkAv~Ms~tdg---~W~veV~lp~gt~~EYKYvI~d~~g~veWE~G~NR~ 86 (412)
|+.|+|.|+ .|+|...++|.-..+ .-+..+++|.|. .+|||.|.. +|...++.-
T Consensus 90 g~~v~v~gS---~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~-~~~kf~vdg-----e~~~s~~~p 146 (289)
T KOG1616|consen 90 GKEVYVDGS---FGNWKTKIPLVRSGKNVGGFSTILDLPPGE-HEYKFIVDG-----EWRHDPDLP 146 (289)
T ss_pred CceEEEecc---cccccccccceecCCCcccceeeEecCCce-EEEEEecCC-----ceecCCCCc
Confidence 999999999 799996777766553 488889999975 899998753 465444333
No 45
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=64.45 E-value=27 Score=39.15 Aligned_cols=61 Identities=18% Similarity=0.421 Sum_probs=41.3
Q ss_pred EEEEEEEeecCCCCEEEEEeCCCCcCCCC-ccccCee--eCCcEEEEEE-ecCCceEEEEEEEEeCCCceEE
Q 015140 12 RISFRLDHQVEFGEHVVILGSTKELGSWK-KNVPMKW--SESGWLCDLE-FKGGESIEYKFVIVRNDKSKAW 79 (412)
Q Consensus 12 ~V~F~I~yqT~~GE~V~VvGS~~eLGnWd-kAv~Ms~--tdg~W~veV~-lp~gt~~EYKYvI~d~~g~veW 79 (412)
.++|++ ....-+.|.|+|+ ..+|+ ...+|.- ..|.|+++|. +++|+ .|||.|.+.++.+.+
T Consensus 37 ~~~F~v--WAP~a~~V~vvgd---fn~w~~~~~~~~~~~~~G~we~~vp~~~~G~--~Yky~l~~~~g~~~~ 101 (628)
T COG0296 37 GVRFRV--WAPNARRVSLVGD---FNDWDGRRMPMRDRKESGIWELFVPGAPPGT--RYKYELIDPSGQLRL 101 (628)
T ss_pred ceEEEE--ECCCCCeEEEEee---cCCccceecccccCCCCceEEEeccCCCCCC--eEEEEEeCCCCceee
Confidence 467766 3445578999998 45576 3333432 2369999998 77774 799999988764433
No 46
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=61.65 E-value=18 Score=41.36 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=38.7
Q ss_pred EEEEEEeecCCCCEEEEEeCCCCcCCCC-ccccCeeeC-CcEEEEEEe-------cCCceEEEEEEEEeCCC
Q 015140 13 ISFRLDHQVEFGEHVVILGSTKELGSWK-KNVPMKWSE-SGWLCDLEF-------KGGESIEYKFVIVRNDK 75 (412)
Q Consensus 13 V~F~I~yqT~~GE~V~VvGS~~eLGnWd-kAv~Ms~td-g~W~veV~l-------p~gt~~EYKYvI~d~~g 75 (412)
++|++ ...--++|.|+|+ ..+|+ ...+|...+ |.|++.|.- +.| -.|||.|...++
T Consensus 116 ~~Frv--WAP~A~~V~LvGd---FN~W~~~~~~M~~~~~GvWe~~ip~~~g~~~~~~G--~~Yky~i~~~~g 180 (758)
T PLN02447 116 ITYRE--WAPGAKAAALIGD---FNNWNPNAHWMTKNEFGVWEIFLPDADGSPAIPHG--SRVKIRMETPDG 180 (758)
T ss_pred EEEEE--ECCCCCEEEEEEe---cCCCCCCccCceeCCCCEEEEEECCccccccCCCC--CEEEEEEEeCCC
Confidence 45655 1222389999998 56899 788998765 599988752 223 479999976544
No 47
>PRK12568 glycogen branching enzyme; Provisional
Probab=59.56 E-value=29 Score=39.46 Aligned_cols=57 Identities=23% Similarity=0.499 Sum_probs=39.8
Q ss_pred EEEEEEEeecCCCCEEEEEeCCCCcCCCC-ccccCeeeC-CcEEEEEE-ecCCceEEEEEEEEeCCC
Q 015140 12 RISFRLDHQVEFGEHVVILGSTKELGSWK-KNVPMKWSE-SGWLCDLE-FKGGESIEYKFVIVRNDK 75 (412)
Q Consensus 12 ~V~F~I~yqT~~GE~V~VvGS~~eLGnWd-kAv~Ms~td-g~W~veV~-lp~gt~~EYKYvI~d~~g 75 (412)
-++|.|= ..--++|.|+|+ ..+|+ ...+|...+ |.|++.|. +..| -.|||.|...++
T Consensus 139 Gv~FaVW--APnA~~VsVvGD---FN~Wdg~~~pM~~~~~GVWelfipg~~~G--~~YKYeI~~~~G 198 (730)
T PRK12568 139 GVRFAVW--APHAQRVAVVGD---FNGWDVRRHPMRQRIGGFWELFLPRVEAG--ARYKYAITAADG 198 (730)
T ss_pred cEEEEEE--CCCCCEEEEEEe---cCCCCccceecccCCCCEEEEEECCCCCC--CEEEEEEEcCCC
Confidence 3577762 234689999997 46798 777887545 59988774 3444 479999976444
No 48
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=57.10 E-value=78 Score=26.09 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=37.9
Q ss_pred CeEEEEEEEEeecCCCCEEEEEeCCCCcCCCC-ccccCeeeC--C---cEEEEEEecCCceEEEEEEEEeC
Q 015140 9 GNVRISFRLDHQVEFGEHVVILGSTKELGSWK-KNVPMKWSE--S---GWLCDLEFKGGESIEYKFVIVRN 73 (412)
Q Consensus 9 ~~v~V~F~I~yqT~~GE~V~VvGS~~eLGnWd-kAv~Ms~td--g---~W~veV~lp~gt~~EYKYvI~d~ 73 (412)
..|+|++++. . ..=++|.|.-..+.. .+. ..++|.... + .|++++.++. ..+.|.|.|.++
T Consensus 16 ~~v~irlr~~-~-~~v~~v~l~~~~~~~-~~~~~~~~M~~~~~~~~~~~~~~~i~~~~-~~~~Y~F~l~~~ 82 (116)
T cd02857 16 DTLHIRLRTK-K-GDVAKVYLRYGDPYD-KGEEEEVPMRKDGSDELFDYWEATLPPPT-GRLRYYFELVDD 82 (116)
T ss_pred CEEEEEEEec-C-CCccEEEEEEECCCC-CCCceEEEEEEeeeCCceeEEEEEEecCC-cEEEEEEEEEcC
Confidence 5677777773 2 234566664443321 112 567887654 2 5999998765 678999988654
No 49
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=56.75 E-value=4.2 Score=34.02 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=19.9
Q ss_pred cccccccCCCCccCCCCCCcc-eeee
Q 015140 129 PDALLEVGTSPFVGQWQGKSA-SFMR 153 (412)
Q Consensus 129 ~~~L~l~Gss~~LG~W~~~kA-~~M~ 153 (412)
++.++++|+.+.||+|+..++ +.|.
T Consensus 17 G~~v~v~Gs~~~LG~W~~~~~~~~~~ 42 (99)
T cd05809 17 GETVYITGSRAELGNWDTKQYPIQLY 42 (99)
T ss_pred CCEEEEEeChHHhCCCChhhhhhccc
Confidence 677889999999999998752 4443
No 50
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=53.52 E-value=14 Score=26.67 Aligned_cols=25 Identities=24% Similarity=0.667 Sum_probs=21.2
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHhhhcc
Q 015140 338 KNPGEYSESFVEQFKMFHSELKDFFNA 364 (412)
Q Consensus 338 ~~~g~y~~~fv~ef~~f~~elk~ffna 364 (412)
.+||+..- .||...++.+|+.|+|-
T Consensus 6 ~~Pg~~a~--~eel~~Y~~~L~~Yinl 30 (36)
T cd00126 6 ENPGDDAS--PEELRQYLAALREYINL 30 (36)
T ss_pred CCCCCCCC--HHHHHHHHHHHHHHHHH
Confidence 36777766 89999999999999984
No 51
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=52.68 E-value=1.1e+02 Score=25.73 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=38.8
Q ss_pred CeeeCCcEEEEEEecC----CceEEEEEEEEeCCCc-eEEecCCCceEEcCCCCeEEEEE
Q 015140 45 MKWSESGWLCDLEFKG----GESIEYKFVIVRNDKS-KAWEAGDNRILKLPKGGSFEIVC 99 (412)
Q Consensus 45 Ms~tdg~W~veV~lp~----gt~~EYKYvI~d~~g~-veWE~G~NR~L~lp~~~s~~V~D 99 (412)
....+|..++.+.+.. ...++|||.-+|.+|- +..+...-+.+.++.....+|.-
T Consensus 27 ~~~~~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~l~l~~~~~~~l~~ 86 (101)
T cd09030 27 ISRTNGLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPEQEPWQSLTLPGGQTVTLQA 86 (101)
T ss_pred EEeeCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCCEEEEECCCCeEEEEE
Confidence 3344468888888732 2379999999999874 45544566889898877666654
No 52
>PRK12313 glycogen branching enzyme; Provisional
Probab=51.99 E-value=75 Score=35.16 Aligned_cols=57 Identities=26% Similarity=0.474 Sum_probs=38.6
Q ss_pred EEEEEEEeecCCCCEEEEEeCCCCcCCCC-ccccCeeeC-CcEEEEEE-ecCCceEEEEEEEEeCCC
Q 015140 12 RISFRLDHQVEFGEHVVILGSTKELGSWK-KNVPMKWSE-SGWLCDLE-FKGGESIEYKFVIVRNDK 75 (412)
Q Consensus 12 ~V~F~I~yqT~~GE~V~VvGS~~eLGnWd-kAv~Ms~td-g~W~veV~-lp~gt~~EYKYvI~d~~g 75 (412)
.++|++ ...--++|.|+|+ ..+|+ ...+|...+ |.|++.+. ++.+ -.|+|.|...++
T Consensus 39 gv~Frv--~AP~A~~V~v~gd---fn~w~~~~~~m~~~~~Gvw~~~i~~~~~g--~~Y~y~v~~~~g 98 (633)
T PRK12313 39 GTYFRV--WAPNAQAVSVVGD---FNDWRGNAHPLVRRESGVWEGFIPGAKEG--QLYKYHISRQDG 98 (633)
T ss_pred cEEEEE--ECCCCCEEEEEEe---cCCCCcccccccccCCCEEEEEeCCCCCC--CEEEEEEECCCC
Confidence 456666 2235578999986 57888 678888755 59998886 3333 478888854333
No 53
>PF13310 Virulence_RhuM: Virulence protein RhuM family
Probab=50.33 E-value=9.1 Score=38.37 Aligned_cols=68 Identities=26% Similarity=0.254 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhccCCCChhHHHHHHhhcCCCCCcccccccccccchhccccc---cCCCChhHHHHHHHHHhhhhcccCC
Q 015140 246 RLIFRELEQISCRKDASPQEVLVIRKIHPCLPSFKAEFTASVPLTRIRDIAH---RNDIPHDLKLEIKHTIQNKLHRNAG 322 (412)
Q Consensus 246 r~~f~~le~~~~~~~~~~~~~~~~r~~~p~lpsf~~eft~~~pltrirdiah---r~dip~dlk~eikhtiqnklhr~ag 322 (412)
-+-|.+|-.-+ +++...|+..-+|| |||-. --|-..+.-++.=.|+|||||-.+-
T Consensus 76 ~dyf~ell~rI--r~IRaSEr~fYqki--------------------~di~a~s~DYd~~~~~t~~Ffa~vQNKlh~Av~ 133 (260)
T PF13310_consen 76 KDYFDELLERI--RDIRASERRFYQKI--------------------TDIYATSIDYDPKSEETKQFFATVQNKLHYAVT 133 (260)
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHH--------------------HHHHhhhhccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 35566654433 35777777777765 33322 3444466677888999999997653
Q ss_pred cchhHHHHHHHhhhh
Q 015140 323 PEDLVATEAMLAKIT 337 (412)
Q Consensus 323 pedl~ate~~l~r~~ 337 (412)
- --|.|-+.+|.-
T Consensus 134 g--~TAAElI~~Rad 146 (260)
T PF13310_consen 134 G--HTAAELIYERAD 146 (260)
T ss_pred c--cChHHHHHhhcc
Confidence 3 457788888764
No 54
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=48.68 E-value=1.5e+02 Score=24.35 Aligned_cols=57 Identities=25% Similarity=0.243 Sum_probs=33.6
Q ss_pred EEEEEEeecCCCCEEEEEeCCCCcCCCC-ccccCeeeC-CcEEEEEEe-cCCceEEEEEEEEeC
Q 015140 13 ISFRLDHQVEFGEHVVILGSTKELGSWK-KNVPMKWSE-SGWLCDLEF-KGGESIEYKFVIVRN 73 (412)
Q Consensus 13 V~F~I~yqT~~GE~V~VvGS~~eLGnWd-kAv~Ms~td-g~W~veV~l-p~gt~~EYKYvI~d~ 73 (412)
++|+|-.. -.++|.|+.-.+.-+... ..++|...+ |.|.+.+.- ..| ..|+|.|...
T Consensus 10 ~~F~vwAP--~A~~V~L~l~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g--~~Y~y~i~~~ 69 (100)
T cd02860 10 TTFRLWAP--TAQSVKLLLYDKDDQDKVLETVQMKRGENGVWSVTLDGDLEG--YYYLYEVKVY 69 (100)
T ss_pred EEEEEECC--CCcEEEEEEEcCCCCCCcceeEeeecCCCCEEEEEeCCccCC--cEEEEEEEEe
Confidence 56666322 256788876432111111 467898755 499988863 333 3699999754
No 55
>PRK14705 glycogen branching enzyme; Provisional
Probab=46.94 E-value=64 Score=38.94 Aligned_cols=58 Identities=21% Similarity=0.387 Sum_probs=40.3
Q ss_pred EEEEEEEeecCCCCEEEEEeCCCCcCCCC-ccccCeee--CCcEEEEEE-ecCCceEEEEEEEEeCCCc
Q 015140 12 RISFRLDHQVEFGEHVVILGSTKELGSWK-KNVPMKWS--ESGWLCDLE-FKGGESIEYKFVIVRNDKS 76 (412)
Q Consensus 12 ~V~F~I~yqT~~GE~V~VvGS~~eLGnWd-kAv~Ms~t--dg~W~veV~-lp~gt~~EYKYvI~d~~g~ 76 (412)
-++|.| ...--++|.|+|+ +.+|+ ...+|... .|.|++.|. +..|. .|||.|...++.
T Consensus 639 Gv~F~V--WAP~A~~V~vvgd---FN~w~~~~~~m~~~~~~GvW~~fipg~~~G~--~Yky~i~~~~g~ 700 (1224)
T PRK14705 639 GVSFAV--WAPNAQAVRVKGD---FNGWDGREHSMRSLGSSGVWELFIPGVVAGA--CYKFEILTKAGQ 700 (1224)
T ss_pred eEEEEE--ECCCCCEEEEEEE---ecCCCCCcccceECCCCCEEEEEECCCCCCC--EEEEEEEcCCCc
Confidence 467766 2233489999997 56898 77789863 369987774 34444 799999865443
No 56
>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana (Mouse-ear cress), C. elegans, Drosophila melanogaster (Fruit fly), Mus musculus (Mouse), Rattus norvegicus (Rat) and Homo sapiens (Human), some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. ; PDB: 3SWH_A.
Probab=44.07 E-value=32 Score=30.83 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=21.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhhccCChHHHHHHH
Q 015140 339 NPGEYSESFVEQFKMFHSELKDFFNAGSLAEQLDSI 374 (412)
Q Consensus 339 ~~g~y~~~fv~ef~~f~~elk~ffna~~~~~~l~~~ 374 (412)
....-|..|++=...-.+=|++||+|+|--=-++.+
T Consensus 75 ~~~~Lt~~q~~~l~~~L~~L~~FFhA~G~Gl~~~~L 110 (137)
T PF10540_consen 75 SQRPLTPKQCDRLFKWLDTLKDFFHAEGNGLPLEFL 110 (137)
T ss_dssp -------TCHHHHHHHHHHHHHHHHCCCTS--HHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 445667788888888899999999999743333333
No 57
>PRK05402 glycogen branching enzyme; Provisional
Probab=43.42 E-value=1.9e+02 Score=32.78 Aligned_cols=59 Identities=25% Similarity=0.501 Sum_probs=39.9
Q ss_pred EEEEEEEeecCCCCEEEEEeCCCCcCCCC-ccccCeee-C-CcEEEEEE-ecCCceEEEEEEEEeCCCce
Q 015140 12 RISFRLDHQVEFGEHVVILGSTKELGSWK-KNVPMKWS-E-SGWLCDLE-FKGGESIEYKFVIVRNDKSK 77 (412)
Q Consensus 12 ~V~F~I~yqT~~GE~V~VvGS~~eLGnWd-kAv~Ms~t-d-g~W~veV~-lp~gt~~EYKYvI~d~~g~v 77 (412)
.++|+|- ..--++|.|+|+ ..+|+ ...+|.-. + |.|++.+. ++.+. .|+|.|...++.+
T Consensus 132 gv~Frvw--AP~A~~V~l~gd---fn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~--~Y~y~v~~~~g~~ 194 (726)
T PRK05402 132 GVRFAVW--APNARRVSVVGD---FNGWDGRRHPMRLRGESGVWELFIPGLGEGE--LYKFEILTADGEL 194 (726)
T ss_pred cEEEEEE--CCCCCEEEEEEE---cCCCCCccccceEcCCCCEEEEEeCCCCCCC--EEEEEEeCCCCcE
Confidence 3566662 346689999985 56788 66789875 4 59998875 34443 7888887554443
No 58
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=43.03 E-value=24 Score=30.45 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhhhccCChHHHHHHHhhhccHHHHHHHHHHHHhhhccCcchhhhhhh
Q 015140 348 VEQFKMFHSELKDFFNAGSLAEQLDSIRESLDEQAASALSSFLECKKVSHCFLLGCIQG 406 (412)
Q Consensus 348 v~ef~~f~~elk~ffna~~~~~~l~~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~ 406 (412)
-+.|...| ++|-++++...|..+.+.. +...+-+-..|+..+.-||..||..-
T Consensus 27 ~~~F~~vh----kvFG~sni~k~L~~~~~~~--R~~a~~Sl~yEA~~R~~dPv~Gc~G~ 79 (101)
T PF03195_consen 27 PQRFANVH----KVFGVSNISKMLQELPPEQ--REDAMRSLVYEANARARDPVYGCVGI 79 (101)
T ss_pred HHHHHHHH----HHHchhHHHHHHHhCCccc--hhhHHHHHHHHHHhhccCCCcchHHH
Confidence 45555554 6899999999999996544 33344555789999999999999643
No 59
>PF04336 DUF479: Protein of unknown function, DUF479; InterPro: IPR007431 This entry contains the Escherichia coli gene yajB, now renamed acpH, which encodes an ACP hydrolase. AcpH converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP []. A mutant E. coli strain having a total deletion of the acpH grows normally, showing that phosphodiesterase activity is not essential for growth, although it is required for turnover of the ACP prosthetic group in vivo. AcpH is found only in Gram-negative organisms suggesting that it plays a role in some aspect of lipid metabolism that is unique to these organisms. The most obvious of which is biosynthesis of lipid A. Because AcpH is a hydrolase, it could possibly be an editing enzyme that intercepts acyl-ACPs that would give an inappropriate lipid A structure if used as acyl donors []. ; GO: 0008770 [acyl-carrier-protein] phosphodiesterase activity, 0006633 fatty acid biosynthetic process
Probab=41.54 E-value=61 Score=27.62 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=23.3
Q ss_pred HHHHHhhhhcccCCcchhHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHHhh
Q 015140 309 IKHTIQNKLHRNAGPEDLVATEAMLAKITKNPGEYSESFVEQFKMFHSELKDF 361 (412)
Q Consensus 309 ikhtiqnklhr~agpedl~ate~~l~r~~~~~g~y~~~fv~ef~~f~~elk~f 361 (412)
|..++++=-.|--.|++|..+-+-|.+-- +.|-+.|..|+-||.+|
T Consensus 61 i~~al~~m~~R~~~~~~l~~a~~~l~~~y-------~~le~~F~~FfpdL~~~ 106 (106)
T PF04336_consen 61 IERALQRMSRRLRRPNPLAGAIEELEEHY-------AELEQDFLEFFPDLQAF 106 (106)
T ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcC
Confidence 33444444444445555554444444322 34556666666666654
No 60
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=41.33 E-value=21 Score=32.62 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhc
Q 015140 341 GEYSESFVEQFKMFHSELKDFFN 363 (412)
Q Consensus 341 g~y~~~fv~ef~~f~~elk~ffn 363 (412)
=-||++||+-...-+.+||.+=+
T Consensus 19 kGYS~~FveN~d~I~~rL~~ge~ 41 (135)
T COG3543 19 KGYSPAFVENYDAIAERLKAGED 41 (135)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCC
Confidence 36999999999999999998754
No 61
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=41.05 E-value=55 Score=31.95 Aligned_cols=102 Identities=27% Similarity=0.583 Sum_probs=65.0
Q ss_pred hhcCCCCCccccccc-ccccchhccccc-cCCCChhHH-----HHHHHHHhhhhcccCC------c-chh----------
Q 015140 271 KIHPCLPSFKAEFTA-SVPLTRIRDIAH-RNDIPHDLK-----LEIKHTIQNKLHRNAG------P-EDL---------- 326 (412)
Q Consensus 271 ~~~p~lpsf~~eft~-~~pltrirdiah-r~dip~dlk-----~eikhtiqnklhr~ag------p-edl---------- 326 (412)
.+.|+-|.=+.++.- +|||+-|-.|.. |-.||.||+ +.+..+||.=+.|-.+ | +|+
T Consensus 140 ~~~p~~~~~~~~~~vv~v~l~~I~~ISs~rl~lp~dl~~~~~r~~~~~~l~el~~r~~~giP~LDPi~DmkI~d~~~~e~ 219 (268)
T PF13234_consen 140 PVKPCSPGEKGEMEVVPVPLSCISSISSVRLKLPKDLRPQEARKQVLKSLQELLKRFPDGIPLLDPIKDMKIKDPEFVEL 219 (268)
T ss_dssp TS-BS-TT--EEEEEEEEECCGEEEEEEEE----TTTTSCCCHHHHHHHHHHHHHHSSS--TCHHCHHHH----HHHHHH
T ss_pred CCCCCCCCCCCeEEEEEeeHHHHHHhhceeeeCcccccchHHHHHHHHHHHHHHHhCCCCCCccChHHhCCCCcHHHHHH
Confidence 344444443577766 999999999988 888888764 6677777766666432 1 222
Q ss_pred -HHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHHhhhccCChHHHHHHHhhhcc
Q 015140 327 -VATEAMLAKITKNPGEYSESFVEQFKMFHSELKDFFNAGSLAEQLDSIRESLD 379 (412)
Q Consensus 327 -~ate~~l~r~~~~~g~y~~~fv~ef~~f~~elk~ffna~~~~~~l~~~~~~~~ 379 (412)
-..+++.+|+..+|=-=++.|-+.|..|++..+ |.+++.+|+..+.
T Consensus 220 ~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~-------l~~~i~~Lk~~l~ 266 (268)
T PF13234_consen 220 VKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAE-------LQEEIKALKRQLS 266 (268)
T ss_dssp HHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 245667778887776666888888888888764 6777777775543
No 62
>PRK14706 glycogen branching enzyme; Provisional
Probab=40.77 E-value=96 Score=34.75 Aligned_cols=57 Identities=21% Similarity=0.404 Sum_probs=39.3
Q ss_pred EEEEEEEeecCCCCEEEEEeCCCCcCCCC-ccccCeeeC-CcEEEEEEe-cCCceEEEEEEEEeCCC
Q 015140 12 RISFRLDHQVEFGEHVVILGSTKELGSWK-KNVPMKWSE-SGWLCDLEF-KGGESIEYKFVIVRNDK 75 (412)
Q Consensus 12 ~V~F~I~yqT~~GE~V~VvGS~~eLGnWd-kAv~Ms~td-g~W~veV~l-p~gt~~EYKYvI~d~~g 75 (412)
.++|++- ..--++|.|+|+ ..+|+ ...+|...+ |.|++.|.- +.| -.|||.|...++
T Consensus 39 Gv~Frvw--AP~A~~V~Lvgd---fn~w~~~~~pM~~~~~GvW~~~vpg~~~g--~~Yky~I~~~~g 98 (639)
T PRK14706 39 GVRFAVW--APGAQHVSVVGD---FNDWNGFDHPMQRLDFGFWGAFVPGARPG--QRYKFRVTGAAG 98 (639)
T ss_pred cEEEEEE--CCCCCEEEEEEe---cCCcccccccccccCCCEEEEEECCCCCC--CEEEEEEECCCC
Confidence 3667662 233579999986 55798 778897655 599988752 343 379999976443
No 63
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=39.01 E-value=22 Score=28.69 Aligned_cols=89 Identities=19% Similarity=0.301 Sum_probs=54.9
Q ss_pred hhccccccCCCChhHHHHHHHHHhhhhcccCCcchhHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHHhhhcc------
Q 015140 291 RIRDIAHRNDIPHDLKLEIKHTIQNKLHRNAGPEDLVATEAMLAKITKNPGEYSESFVEQFKMFHSELKDFFNA------ 364 (412)
Q Consensus 291 rirdiahr~dip~dlk~eikhtiqnklhr~agpedl~ate~~l~r~~~~~g~y~~~fv~ef~~f~~elk~ffna------ 364 (412)
|+++||.+-.|++---..+-.+++.+ .||..+.= ..+ .+++...+.+++....+.++...+.+
T Consensus 1 ~~~ela~~l~is~stvs~~l~~L~~~--------glI~r~~~-~~~--~lT~~g~~~~~~~~~~~~~~~~~l~~~~~~~~ 69 (96)
T smart00529 1 RTSEIAERLNVSPPTVTQMLKKLEKD--------GLVEYEPY-RGI--TLTEKGRRLARRLLRKHRLLERFLVDVLGVDE 69 (96)
T ss_pred CHHHHHHHhCCChHHHHHHHHHHHHC--------CCEEEcCC-Cce--EechhHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 67888998899876666666666654 12211110 011 24455556666666666555555543
Q ss_pred CChHHHHHHHhhhccHHHHHHHHHHH
Q 015140 365 GSLAEQLDSIRESLDEQAASALSSFL 390 (412)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~~~~~~f~ 390 (412)
..+.+.+..+...++++..+.+..|+
T Consensus 70 ~e~~~l~~~l~~~~~~~~~~~~~~~~ 95 (96)
T smart00529 70 EEVHEEAERLEHVLSDELEDRLDRFL 95 (96)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHh
Confidence 44556667777788999988888876
No 64
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=38.11 E-value=27 Score=30.01 Aligned_cols=41 Identities=29% Similarity=0.407 Sum_probs=30.2
Q ss_pred cccchhccccccCCCChhHHHHHHHHHhhhhcccCCcchhHHHH
Q 015140 287 VPLTRIRDIAHRNDIPHDLKLEIKHTIQNKLHRNAGPEDLVATE 330 (412)
Q Consensus 287 ~pltrirdiahr~dip~dlk~eikhtiqnklhr~agpedl~ate 330 (412)
.|---.||||| -|.+|+++.|...++++-+|- ++|....+|
T Consensus 52 t~dgEFrDI~H--PI~~~~R~kIq~aVl~~Y~~~-~~e~~~~~e 92 (95)
T COG2088 52 TPDGEFRDIAH--PINSDTREKIQDAVLKEYERL-DEEAEAVSE 92 (95)
T ss_pred CCCcchhhccC--cCCHHHHHHHHHHHHHHHHHh-chhhhhhhh
Confidence 44455689999 377999999999999999884 454443333
No 65
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=36.20 E-value=1e+02 Score=25.84 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=32.6
Q ss_pred cCeeeCCcEEEEEEecC----CceEEEEEEEEeCCCceEEec-CCCceEEcCCCCeEEEEE
Q 015140 44 PMKWSESGWLCDLEFKG----GESIEYKFVIVRNDKSKAWEA-GDNRILKLPKGGSFEIVC 99 (412)
Q Consensus 44 ~Ms~tdg~W~veV~lp~----gt~~EYKYvI~d~~g~veWE~-G~NR~L~lp~~~s~~V~D 99 (412)
.....+|...+.+.+.. ...+.|||.-+|.+|-..... ..-+.+.++.+...+|.-
T Consensus 18 ~~~~~~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~ 78 (94)
T PF07233_consen 18 STSRVNGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSA 78 (94)
T ss_dssp EEEECCCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEE
T ss_pred EEEeeCCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEE
Confidence 33445568888888732 236999999999987655544 344788888877665554
No 66
>PF08974 DUF1877: Domain of unknown function (DUF1877); InterPro: IPR015068 This entry represents a family of hypothetical proteins.; PDB: 1RYL_B.
Probab=35.87 E-value=35 Score=31.28 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=21.4
Q ss_pred CCC-----CCcHHHHHHHHHHHHHHHhhhcc
Q 015140 339 NPG-----EYSESFVEQFKMFHSELKDFFNA 364 (412)
Q Consensus 339 ~~g-----~y~~~fv~ef~~f~~elk~ffna 364 (412)
+|+ +..+++.++....+++|++||+.
T Consensus 125 YP~iw~~~~~~~e~~~~l~~~f~~L~~Fy~~ 155 (167)
T PF08974_consen 125 YPNIWDEEEEDEEDFEYLWDYFEELKEFYQK 155 (167)
T ss_dssp TT-----GGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 677 55678899999999999999974
No 67
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=35.56 E-value=26 Score=36.01 Aligned_cols=71 Identities=30% Similarity=0.451 Sum_probs=48.2
Q ss_pred hHHHHHHHhhhhcCCCCCcHHHHHHHHHHHH--HHHhhhccCChHHHHHHHhhhccHHHH--HHHHHHHHhhhccCcchh
Q 015140 326 LVATEAMLAKITKNPGEYSESFVEQFKMFHS--ELKDFFNAGSLAEQLDSIRESLDEQAA--SALSSFLECKKVSHCFLL 401 (412)
Q Consensus 326 l~ate~~l~r~~~~~g~y~~~fv~ef~~f~~--elk~ffna~~~~~~l~~~~~~~~~~~~--~~~~~f~~~k~~~~~~~~ 401 (412)
|--.|+||+||.. .+.||+-.+.+-. |.-|.- +=|-+.|+.|++-....-. -..+.|-|+|-+|-+. .
T Consensus 77 L~~LeavLqRir~-----G~~LVekM~~YASDQEVLdMh--~FlreAL~rLrqeePq~lqa~V~td~F~E~k~rLQ~L-~ 148 (324)
T PF12126_consen 77 LGRLEAVLQRIRT-----GGALVEKMKLYASDQEVLDMH--GFLREALERLRQEEPQNLQAAVRTDGFDEFKARLQDL-V 148 (324)
T ss_pred HhHHHHHHHHHHh-----HHHHHHHHHHhcchHHHHHHH--HHHHHHHHHhhhhcCcccccceecccHHHHHHHHHHH-H
Confidence 4458999999983 5789998887754 332322 2266788888865444433 3456799999999874 4
Q ss_pred hhh
Q 015140 402 GCI 404 (412)
Q Consensus 402 ~~~ 404 (412)
.||
T Consensus 149 scI 151 (324)
T PF12126_consen 149 SCI 151 (324)
T ss_pred HHH
Confidence 566
No 68
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=35.15 E-value=2.4e+02 Score=22.79 Aligned_cols=54 Identities=22% Similarity=0.519 Sum_probs=34.0
Q ss_pred EEEEEEeecCCCCEEEEEeCCCCcCCCC-ccccCeeeC--CcEEEEEE-ecCCceEEEEEEEEeC
Q 015140 13 ISFRLDHQVEFGEHVVILGSTKELGSWK-KNVPMKWSE--SGWLCDLE-FKGGESIEYKFVIVRN 73 (412)
Q Consensus 13 V~F~I~yqT~~GE~V~VvGS~~eLGnWd-kAv~Ms~td--g~W~veV~-lp~gt~~EYKYvI~d~ 73 (412)
++|++ +. .--++|.|+++ .++|+ ..++|...+ |.|.+.+. .+.+. .|+|.+...
T Consensus 23 ~~frv-~a-P~A~~V~l~~~---~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~~--~Y~~~v~~~ 80 (106)
T cd02855 23 VRFAV-WA-PNARRVSVVGD---FNGWDGRRHPMRRRGDSGVWELFIPGLGEGE--LYKYEILGA 80 (106)
T ss_pred EEEEE-EC-CCCCEEEEEEE---CCCCCCcceecEECCCCCEEEEEECCCCCCC--EEEEEEECC
Confidence 45666 22 22378999875 35676 567888754 49987775 33333 488887643
No 69
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=33.35 E-value=2.9e+02 Score=28.98 Aligned_cols=150 Identities=21% Similarity=0.256 Sum_probs=77.2
Q ss_pred CCceeeccCCCcCCCCchhhHHHHHHHHHHhhhccCCCChhHHHHHHhhcCCCCCccc-ccccccccchhccccccCCCC
Q 015140 224 TGKIPCFEDGGHHRPNRHAEISRLIFRELEQISCRKDASPQEVLVIRKIHPCLPSFKA-EFTASVPLTRIRDIAHRNDIP 302 (412)
Q Consensus 224 ~g~i~c~e~g~h~rpn~ha~~~r~~f~~le~~~~~~~~~~~~~~~~r~~~p~lpsf~~-eft~~~pltrirdiahr~dip 302 (412)
..-|+|.+|= -.|=+++|+|-+.+.+..|- .-+ ..++ +|.+|++.. -...|.|=++|= -.|=|
T Consensus 204 ~~lvPvG~DQ-----~~h~~ltRdiA~r~n~~~gf--~~P--~~l~---~~~lpgL~G~KMSkS~~~s~I~----L~D~p 267 (368)
T PRK12285 204 PTLVPVGIDQ-----DPHIRLTRDIAERLHGGYGF--IKP--SSTY---HKFMPGLTGGKMSSSKPESAIY----LTDDP 267 (368)
T ss_pred ceEEEeccch-----HHHHHHHHHHHHHHhhhcCC--CCc--hhHh---hhcccCCCCCcCCCCCCCCeee----ccCCH
Confidence 3466777776 47899999999999876651 112 2232 578888885 455688855553 33445
Q ss_pred hhHHHHHHHHHh-----hhhcccCC--cchhHHHHHHHhhhhcCCCCCcHHHHHHHHH---HHHHHHhhhccCChHHHHH
Q 015140 303 HDLKLEIKHTIQ-----NKLHRNAG--PEDLVATEAMLAKITKNPGEYSESFVEQFKM---FHSELKDFFNAGSLAEQLD 372 (412)
Q Consensus 303 ~dlk~eikhtiq-----nklhr~ag--pedl~ate~~l~r~~~~~g~y~~~fv~ef~~---f~~elk~ffna~~~~~~l~ 372 (412)
.++++=|+...- ...||.-| |+.=+.. .++.-+...+++--++..++|+- =+.|||.-- |..+.+.|.
T Consensus 268 ~~I~kKI~kA~Td~~~t~~~~~~~~g~p~~~~v~-~~l~~~~~~~d~~~eei~~~y~~g~~~~g~~K~~l-ae~i~~~l~ 345 (368)
T PRK12285 268 ETVKKKIMKALTGGRATLEEQRKLGGEPDECVVY-ELLLYHLEEDDKELKEIYEECRSGELLCGECKKEA-AEKIAEFLK 345 (368)
T ss_pred HHHHHHHHhCcCCCCcccccccccCCCCCcchHH-HHHHHHhcCCCccHHHHHHHHhcCCCCHHHHHHHH-HHHHHHHHH
Confidence 555555544211 12344322 3322211 12222222233333445555532 344555432 223556666
Q ss_pred HHhhhccHHHHHHHHHHHHh
Q 015140 373 SIRESLDEQAASALSSFLEC 392 (412)
Q Consensus 373 ~~~~~~~~~~~~~~~~f~~~ 392 (412)
.+++...+-. +.++.|+..
T Consensus 346 ~~~er~~~~~-~~~~~~~~~ 364 (368)
T PRK12285 346 EHQEKREEAR-EILEKYLYD 364 (368)
T ss_pred HHHHHHHHHH-HHHHHhhcc
Confidence 6665554444 356666543
No 70
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.23 E-value=76 Score=30.84 Aligned_cols=67 Identities=25% Similarity=0.386 Sum_probs=45.5
Q ss_pred HHHHHhhhhcCCCCCcHHHHHH------HHHHHHHHHhhhccCChHHHHH----HHhhhccHHHHHHHHHHHHhhhccCc
Q 015140 329 TEAMLAKITKNPGEYSESFVEQ------FKMFHSELKDFFNAGSLAEQLD----SIRESLDEQAASALSSFLECKKVSHC 398 (412)
Q Consensus 329 te~~l~r~~~~~g~y~~~fv~e------f~~f~~elk~ffna~~~~~~l~----~~~~~~~~~~~~~~~~f~~~k~~~~~ 398 (412)
+..+|..+.- |--.++.++++ .+.|.+-||+|. +++.+++. .+...|..=..+.|..|.++|++.|.
T Consensus 38 ~nsfl~~~~p-~~~~s~~vidqdYT~~al~~f~~~l~e~~--~~ll~~~~~~~~~~~~pL~~f~k~~i~~~Ke~rk~Fd~ 114 (214)
T cd07609 38 INSFLSHLLP-PLLVSGGVIDQDYTPLALKRFGDGLKDFW--GGVLSALKGNDSLILDPLRSFVKSDIRPYKELRKNFEY 114 (214)
T ss_pred HHHHHHhcCC-ccccccchhCchhHHHHHHHHHHHHHHHH--HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777774 25577777777 889999999999 56666664 22333444445667788888887764
No 71
>PLN02316 synthase/transferase
Probab=30.88 E-value=94 Score=36.94 Aligned_cols=77 Identities=9% Similarity=0.343 Sum_probs=46.5
Q ss_pred CCeEEEEEEEE-eecCCCCEEEEEeCCCCcCCCC--ccc--cCee---eCC-cEEEEEEecCCc-eEEEEEEEEeCC--C
Q 015140 8 GGNVRISFRLD-HQVEFGEHVVILGSTKELGSWK--KNV--PMKW---SES-GWLCDLEFKGGE-SIEYKFVIVRND--K 75 (412)
Q Consensus 8 ~~~v~V~F~I~-yqT~~GE~V~VvGS~~eLGnWd--kAv--~Ms~---tdg-~W~veV~lp~gt-~~EYKYvI~d~~--g 75 (412)
+.+++|.+|-. -.+.-.++|+|.|. ..+|. ..+ +|-. .+| .|.++|.+|... .++|.| .|+. +
T Consensus 328 G~~v~lyYN~~~~~L~~~~~v~i~gg---~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVF--sdg~~~~ 402 (1036)
T PLN02316 328 GDTVKLYYNRSSGPLAHSTEIWIHGG---YNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVF--ADGPPGN 402 (1036)
T ss_pred CCEEEEEECCCCCCCCCCCcEEEEEe---EcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEE--ecCCccc
Confidence 34567777663 35566789999888 56787 222 2222 235 899999999875 455555 3332 2
Q ss_pred ceEEecCCCceEEc
Q 015140 76 SKAWEAGDNRILKL 89 (412)
Q Consensus 76 ~veWE~G~NR~L~l 89 (412)
...|++..+.-+.+
T Consensus 403 ~~~yDNn~~~Dyh~ 416 (1036)
T PLN02316 403 ARNYDNNGRQDFHA 416 (1036)
T ss_pred ccccccCCCcceee
Confidence 34786654444443
No 72
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=30.63 E-value=1.2e+02 Score=27.52 Aligned_cols=58 Identities=12% Similarity=0.208 Sum_probs=42.9
Q ss_pred CCChhHHHHHHHHHhhhhcc------cCCcchhHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHH
Q 015140 300 DIPHDLKLEIKHTIQNKLHR------NAGPEDLVATEAMLAKITKNPGEYSESFVEQFKMFHSELK 359 (412)
Q Consensus 300 dip~dlk~eikhtiqnklhr------~agpedl~ate~~l~r~~~~~g~y~~~fv~ef~~f~~elk 359 (412)
....++|++|++++....=| .+.|.=+--.+.|=.+|. .|+..+.|-+||+...++++
T Consensus 113 ~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~~~~~ri~~~~~~~~--~g~~~~~~~~~~~~i~~r~~ 176 (177)
T PF09580_consen 113 FNTKKIKKKVEKAVKSADPRIYNVYVSTDPDIFDRIRNLANRIR--NGRPVSGFNDEIKEIVRRMF 176 (177)
T ss_pred cchhHHHHHHHHHHHHhCCCccEEEEEcCHHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhhC
Confidence 45678888888888774433 567766666777777775 68888999999988877764
No 73
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=29.20 E-value=2.2e+02 Score=31.71 Aligned_cols=167 Identities=17% Similarity=0.189 Sum_probs=96.4
Q ss_pred CcCCCCchhhHHHHHHHHHHhhhccCCCChhHHHHHHhhcCC--CCCcccccccccccchhccccccCCCChhHHHHHHH
Q 015140 234 GHHRPNRHAEISRLIFRELEQISCRKDASPQEVLVIRKIHPC--LPSFKAEFTASVPLTRIRDIAHRNDIPHDLKLEIKH 311 (412)
Q Consensus 234 ~h~rpn~ha~~~r~~f~~le~~~~~~~~~~~~~~~~r~~~p~--lpsf~~eft~~~pltrirdiahr~dip~dlk~eikh 311 (412)
-|-|-+++..|...+...++.+.++.++......+-+.++-- +-.+.+ ++.+++..-+=--..-+|+.|
T Consensus 213 e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~---------~l~~~~~~l~ea~~~l~ea~~ 283 (557)
T COG0497 213 ERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDG---------KLSELAELLEEALYELEEASE 283 (557)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccCh---------hHHHHHHHHHHHHHHHHHHHH
Confidence 366777888888888888888887665554444443322211 111111 111111111111122357888
Q ss_pred HHhhhhccc-CCcchhHHHHHHHhhhh---cCCCCCcHHHHHHHHHHHHHHHhh----hccCChHHHHHHHhhhccHHHH
Q 015140 312 TIQNKLHRN-AGPEDLVATEAMLAKIT---KNPGEYSESFVEQFKMFHSELKDF----FNAGSLAEQLDSIRESLDEQAA 383 (412)
Q Consensus 312 tiqnklhr~-agpedl~ate~~l~r~~---~~~g~y~~~fv~ef~~f~~elk~f----fna~~~~~~l~~~~~~~~~~~~ 383 (412)
.|++.+-.. +.|++|-..|.=|..+. +.=|-=+++-++.....-.||-.. +....|..++..++..++..+.
T Consensus 284 el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~ 363 (557)
T COG0497 284 ELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAE 363 (557)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888775 68999999987555544 443444555555555555555544 3345566777777777777765
Q ss_pred HHHHHHHHhhhccCcchhhhhhhhhh
Q 015140 384 SALSSFLECKKVSHCFLLGCIQGLKM 409 (412)
Q Consensus 384 ~~~~~f~~~k~~~~~~~~~~~~~~~~ 409 (412)
.+...=-..=+.|...+..-++.|+|
T Consensus 364 ~Ls~~R~~~A~~L~~~v~~eL~~L~M 389 (557)
T COG0497 364 ALSAIRKKAAKELEKEVTAELKALAM 389 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55544444555566666666666666
No 74
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=28.33 E-value=2.9e+02 Score=22.72 Aligned_cols=50 Identities=24% Similarity=0.534 Sum_probs=27.6
Q ss_pred EEEEecCCceEEEEEEEEeCCCceEEecCCCc-------eEEcCCCCeEEEEEEeCCCC
Q 015140 54 CDLEFKGGESIEYKFVIVRNDKSKAWEAGDNR-------ILKLPKGGSFEIVCHWNKTG 105 (412)
Q Consensus 54 veV~lp~gt~~EYKYvI~d~~g~veWE~G~NR-------~L~lp~~~s~~V~D~W~~~p 105 (412)
+++..+.|. .|-|+|.|.+|...|.=...+ ...++++.+.+....|...+
T Consensus 16 v~l~f~sgq--~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 16 VTLQFPSGQ--RYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEESSS----EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS--
T ss_pred EEEEeCCCC--EEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCC
Confidence 456667765 577788877777655444443 35567788888889998765
No 75
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=27.80 E-value=48 Score=22.66 Aligned_cols=11 Identities=36% Similarity=0.613 Sum_probs=7.6
Q ss_pred HHHHHHHHHHH
Q 015140 349 EQFKMFHSELK 359 (412)
Q Consensus 349 ~ef~~f~~elk 359 (412)
++|..||+-||
T Consensus 7 d~f~eFY~rlk 17 (28)
T PF12108_consen 7 DPFSEFYERLK 17 (28)
T ss_dssp -HHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 67888887655
No 76
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=26.36 E-value=56 Score=23.53 Aligned_cols=24 Identities=21% Similarity=0.660 Sum_probs=18.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhhcc
Q 015140 339 NPGEYSESFVEQFKMFHSELKDFFNA 364 (412)
Q Consensus 339 ~~g~y~~~fv~ef~~f~~elk~ffna 364 (412)
+||+..- .||++.++++|.+|||-
T Consensus 7 ~P~~~as--peel~~Y~~~L~~Y~~l 30 (36)
T PF00159_consen 7 RPGDFAS--PEELAQYYAALRHYINL 30 (36)
T ss_dssp SSSTTSS--HHHHHHHHHHHHHHHHH
T ss_pred CCCCCCC--HHHHHHHHHHHHHHHHH
Confidence 3444433 69999999999999984
No 77
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=26.22 E-value=2.9e+02 Score=28.49 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=47.4
Q ss_pred CCCcccccccccc--cchhccccccCCCCh-----hHHHHHHHHHhhhhc-----ccCC--------cchhHHH---HHH
Q 015140 276 LPSFKAEFTASVP--LTRIRDIAHRNDIPH-----DLKLEIKHTIQNKLH-----RNAG--------PEDLVAT---EAM 332 (412)
Q Consensus 276 lpsf~~eft~~~p--ltrirdiahr~dip~-----dlk~eikhtiqnklh-----r~ag--------pedl~at---e~~ 332 (412)
.+|+.+=| +++| |.+.. .-++|. ++.++++.-.++-++ ++.| |+-..+. +.+
T Consensus 21 ~~~~~~~~-~~~p~~~~~~~----~~~lp~~~~~~~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~~~p~~~~~~~~~~~~ 95 (447)
T PRK00451 21 VKSIDELF-ADIPEELRLKR----PLDLPPGLSEMELLRHLRELAAKNKTAEEYPSFLGAGAYDHYIPAVVDHIISRSEF 95 (447)
T ss_pred CCCHHHHH-HhCCHHHHhCC----CCCCCCCCCHHHHHHHHHHHHhcCCCcCcCcccCcccccCCcCcHHHHHHHhchhH
Confidence 45555555 7778 44333 226885 566667666654432 2344 3222222 233
Q ss_pred HhhhhcCCCCCcHHHHHHHHHHHHHHHhhhccC
Q 015140 333 LAKITKNPGEYSESFVEQFKMFHSELKDFFNAG 365 (412)
Q Consensus 333 l~r~~~~~g~y~~~fv~ef~~f~~elk~ffna~ 365 (412)
+...+.+-++.++.-.+....|..-|.++|++.
T Consensus 96 ~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g~~ 128 (447)
T PRK00451 96 YTAYTPYQPEISQGTLQAIFEYQTMICELTGMD 128 (447)
T ss_pred HHhcCCCCCccchHHHHHHHHHHHHHHHHhCCC
Confidence 334443223455666677777888899999874
No 78
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=25.68 E-value=2.6e+02 Score=22.31 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=31.8
Q ss_pred EEEEEEeecCCCCEEEEEeCCCCcCCCCccccCeeeC-CcEEEEEEecCCceEEEEEEEE
Q 015140 13 ISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSE-SGWLCDLEFKGGESIEYKFVIV 71 (412)
Q Consensus 13 V~F~I~yqT~~GE~V~VvGS~~eLGnWdkAv~Ms~td-g~W~veV~lp~gt~~EYKYvI~ 71 (412)
++|.|-. .-.++|.|+... | ..++|...+ |.|++.+.-..| ..|+|.|.
T Consensus 10 ~~F~vwA--P~A~~V~l~l~~-----~-~~~~m~~~~~G~W~~~v~~~~g--~~Y~y~v~ 59 (85)
T cd02853 10 TRFRLWA--PDAKRVTLRLDD-----G-EEIPMQRDGDGWFEAEVPGAAG--TRYRYRLD 59 (85)
T ss_pred EEEEEeC--CCCCEEEEEecC-----C-CcccCccCCCcEEEEEeCCCCC--CeEEEEEC
Confidence 5666622 234788888642 3 467887655 599988863333 47999886
No 79
>PF12728 HTH_17: Helix-turn-helix domain
Probab=25.14 E-value=19 Score=26.08 Aligned_cols=27 Identities=41% Similarity=0.781 Sum_probs=19.9
Q ss_pred HHhhhhheehcCCceeeccCCCcCCCCc
Q 015140 213 IYSAIYLKWINTGKIPCFEDGGHHRPNR 240 (412)
Q Consensus 213 ~~~~~yl~wi~~g~i~c~e~g~h~rpn~ 240 (412)
...++| +|+..|.|+|+--|++++=++
T Consensus 14 s~~tv~-~~~~~g~i~~~~~g~~~~~~~ 40 (51)
T PF12728_consen 14 SRSTVY-RWIRQGKIPPFKIGRKWRIPK 40 (51)
T ss_pred CHHHHH-HHHHcCCCCeEEeCCEEEEeH
Confidence 445566 899999999997777665443
No 80
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=25.11 E-value=1.5e+02 Score=23.60 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=55.7
Q ss_pred HHHHHHHHhhhhcccCCcchhHHHHHHHhhhhcCCC-CCcHHHHHHHHHHHHHHHhhhccCChHHHHHHHhhhcc
Q 015140 306 KLEIKHTIQNKLHRNAGPEDLVATEAMLAKITKNPG-EYSESFVEQFKMFHSELKDFFNAGSLAEQLDSIRESLD 379 (412)
Q Consensus 306 k~eikhtiqnklhr~agpedl~ate~~l~r~~~~~g-~y~~~fv~ef~~f~~elk~ffna~~~~~~l~~~~~~~~ 379 (412)
+.-|.-.+=.+.-..+.|+|+-..+.+++++..... +-...|.+--..||..|=++.+-.-|.+.++.+...+.
T Consensus 6 R~~Le~~~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~fh~~l~~~~~N~~l~~~~~~l~~~~~ 80 (125)
T PF07729_consen 6 RELLEPAAARLAAQRITDEDIAELEELLEQMEEAIEDEDIEEFIEADIEFHRALAEASGNPYLIQILERLRDRLQ 80 (125)
T ss_dssp HHHHHHHHHHHHGGCCCHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 344444445566677889999999999999986443 33455899999999999999998888888888875443
No 81
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=24.99 E-value=2.9e+02 Score=31.92 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=49.6
Q ss_pred ChhHHHHHHHHHhhhhcccCCcchhHHHHHHHhhhhc----CCCCCcHHHHHHHHHHHH----HHHhhhccCChH
Q 015140 302 PHDLKLEIKHTIQNKLHRNAGPEDLVATEAMLAKITK----NPGEYSESFVEQFKMFHS----ELKDFFNAGSLA 368 (412)
Q Consensus 302 p~dlk~eikhtiqnklhr~agpedl~ate~~l~r~~~----~~g~y~~~fv~ef~~f~~----elk~ffna~~~~ 368 (412)
-.+||+|||..|..-+.| ||==--.|++++-|.. .....+++|+++-..|-. |+.+-+|-++|-
T Consensus 556 a~~Lk~ei~kki~e~~~~---~~~kek~ea~~aev~~~g~s~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~ 627 (762)
T PLN03229 556 AEKLKAEINKKFKEVMDR---PEIKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLE 627 (762)
T ss_pred hhhhhHHHHHHHHHhccc---HHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 468999999999887766 5555556777776653 566889999999998888 677888877763
No 82
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=24.84 E-value=5e+02 Score=30.14 Aligned_cols=192 Identities=21% Similarity=0.292 Sum_probs=107.4
Q ss_pred ccccccccCCCCccCCCCC--CcceeeecCCCccccccccccccCccchhhhhhhccccchhHHHHHHHHHHHHHhhcCC
Q 015140 128 APDALLEVGTSPFVGQWQG--KSASFMRADDHWNREMERKWDTSGLQGLTLKLVEGDQRARNWWRKLEVVRELIVENLQS 205 (412)
Q Consensus 128 l~~~L~l~Gss~~LG~W~~--~kA~~M~~~n~~~~~~~~~wdt~gl~g~a~~lv~gD~~a~~W~~Kl~~v~~~~~~~~~~ 205 (412)
++.++++.|.+-..|++-. .+-++|.++. .+-+.+++|+|.-| -.|..... + .+.. ++-
T Consensus 281 VP~ISVViGeggSGGAlA~g~aD~VlMle~A--------~~sVisPEgaAsIL-wkd~~~A~-----e-AAe~----lki 341 (762)
T PLN03229 281 VPIVSIVIGEGGSGGALAIGCANKLLMLENA--------VFYVASPEACAAIL-WKSAKAAP-----K-AAEK----LRI 341 (762)
T ss_pred CCEEEEEeCCcchHHHHHhhcCCEEEEecCC--------eEEecCHHHHHHHH-hcCcccHH-----H-HHHH----cCC
Confidence 4666778888877776644 4557777764 46678888886544 33332110 1 1111 111
Q ss_pred -hhhhhHHHHhhhhheehcCCceeeccCCCcCCCCchh-hHHHHHHHHHHhhhccCCCCh-hHHH-HHHhhcCCCCCccc
Q 015140 206 -DERLEALIYSAIYLKWINTGKIPCFEDGGHHRPNRHA-EISRLIFRELEQISCRKDASP-QEVL-VIRKIHPCLPSFKA 281 (412)
Q Consensus 206 -~~~~~~l~~~~~yl~wi~~g~i~c~e~g~h~rpn~ha-~~~r~~f~~le~~~~~~~~~~-~~~~-~~r~~~p~lpsf~~ 281 (412)
...|-.|. |-.+-|+=.-+|.|..|..-+ .|...|-+.|........... +.|. =.|+|-
T Consensus 342 Ta~dL~~lG--------iiD~IIpEp~ggAh~d~~~~~~~l~~~i~~~L~~l~~~~~~~l~~~R~~kfr~~G-------- 405 (762)
T PLN03229 342 TAQELCRLQ--------IADGIIPEPLGGAHADPSWTSQQIKIAINENMDELGKMDTEELLKHRMLKFRKIG-------- 405 (762)
T ss_pred CHHHHHhCC--------CCeeeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC--------
Confidence 11222211 223445555578888887654 566777777777552221111 1111 134442
Q ss_pred ccccccccchhccccc-cCC---CC--------hhHHHHHHHHHhhhhcccC--CcchhHHHHHHHhhhhcCCCCCcHHH
Q 015140 282 EFTASVPLTRIRDIAH-RND---IP--------HDLKLEIKHTIQNKLHRNA--GPEDLVATEAMLAKITKNPGEYSESF 347 (412)
Q Consensus 282 eft~~~pltrirdiah-r~d---ip--------~dlk~eikhtiqnklhr~a--gpedl~ate~~l~r~~~~~g~y~~~f 347 (412)
.|..++|+.-.|.+-- ..| +| .-||+||-.+= ++ .|-.++ ...|+.++.
T Consensus 406 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~Le~elekLk~eilKAk------~s~~~~~~~~-L~e~IeKLk---------- 468 (762)
T PLN03229 406 GFQEGVPVDPERKVNMKKREAVKTPVRELEGEVEKLKEQILKAK------ESSSKPSELA-LNEMIEKLK---------- 468 (762)
T ss_pred CcccCCCCChhhhcccchhccCCCCCccHHHHHHHHHHHHHhcc------cccCCCCChH-HHHHHHHHH----------
Confidence 4778888876654422 112 33 34677776542 22 333333 345666666
Q ss_pred HHHHHHHHHHHHhhhccCChHHHHHHHh
Q 015140 348 VEQFKMFHSELKDFFNAGSLAEQLDSIR 375 (412)
Q Consensus 348 v~ef~~f~~elk~ffna~~~~~~l~~~~ 375 (412)
+.|-+||-+=+|+.||.++|+.||
T Consensus 469 ----~E~d~e~S~A~~~~gLk~kL~~Lr 492 (762)
T PLN03229 469 ----KEIDLEYTEAVIAMGLQERLENLR 492 (762)
T ss_pred ----HHHHHHHHHhhhhhhHHHHHHHHH
Confidence 467788999999999999999999
No 83
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=24.18 E-value=1.7e+02 Score=32.18 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=44.7
Q ss_pred chhHHHHHHHhhhhc----CCCCCcHHHHHHHHHHHHHHHhhhccCChHHHHHHHhhhccHHHHHHHHHHHHhhhc
Q 015140 324 EDLVATEAMLAKITK----NPGEYSESFVEQFKMFHSELKDFFNAGSLAEQLDSIRESLDEQAASALSSFLECKKV 395 (412)
Q Consensus 324 edl~ate~~l~r~~~----~~g~y~~~fv~ef~~f~~elk~ffna~~~~~~l~~~~~~~~~~~~~~~~~f~~~k~~ 395 (412)
.|+...-+|++.|-+ .||-|.++||+++-.=.+|||+.-..-+. |.++.+...-.++..++.+.|..+|..
T Consensus 236 tD~AL~~gl~k~li~~~~~~~~~~D~~Fi~~~t~Gfd~~~~~l~~~t~-e~~~~~tGv~~e~I~~~A~~~a~a~~~ 310 (574)
T cd02767 236 GDIALLNGMAKHLIERDDEPGNVLDHDFIAEHTSGFEEYVAALRALSW-DEIERASGLSREEIEAFAAMYAKSERV 310 (574)
T ss_pred cHHHHHHHHHHHHHhCccccCCCcCHHHHHHHccCHHHHHHHHHcCCH-HHHHhHhCcCHHHHHHHHHHHHhCCCE
Confidence 355556666666543 57999999999977666777766655454 555666644445555555555555543
No 84
>PF06935 DUF1284: Protein of unknown function (DUF1284); InterPro: IPR009702 This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.
Probab=24.15 E-value=70 Score=27.39 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=17.2
Q ss_pred CCcHHHHHHHHHHHHHHHh
Q 015140 342 EYSESFVEQFKMFHSELKD 360 (412)
Q Consensus 342 ~y~~~fv~ef~~f~~elk~ 360 (412)
-||++||+-++.-...|++
T Consensus 1 GYS~~Fv~Nm~~Iv~~l~~ 19 (103)
T PF06935_consen 1 GYSPEFVENMKKIVERLRN 19 (103)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 3999999999999999975
No 85
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.13 E-value=1.2e+02 Score=31.10 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHHHHhhhccCCh-HHHHHHHhhhccHHHHHHHHHHHHhhhcc
Q 015140 344 SESFVEQFKMFHSELKDFFNAGSL-AEQLDSIRESLDEQAASALSSFLECKKVS 396 (412)
Q Consensus 344 ~~~fv~ef~~f~~elk~ffna~~~-~~~l~~~~~~~~~~~~~~~~~f~~~k~~~ 396 (412)
-..|.+||+.|-.||+.-|.--=| +--|+-|+..+|+.+.+-=..|-++++.+
T Consensus 163 RP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~rse~~rqeeaensm 216 (338)
T KOG3647|consen 163 RPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTRSEPIRQEEAENSM 216 (338)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 358999999999999975533211 23356677777887777767777776653
No 86
>PF06798 PrkA: PrkA serine protein kinase C-terminal domain; InterPro: IPR010650 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry is found at the C terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=23.03 E-value=6.7e+02 Score=24.95 Aligned_cols=104 Identities=16% Similarity=0.294 Sum_probs=73.3
Q ss_pred ccccchhcccccc----CCC-ChhHHHHHHHHHhh-hhcccCCcchhHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHH
Q 015140 286 SVPLTRIRDIAHR----NDI-PHDLKLEIKHTIQN-KLHRNAGPEDLVATEAMLAKITKNPGEYSESFVEQFKMFHSELK 359 (412)
Q Consensus 286 ~~pltrirdiahr----~di-p~dlk~eikhtiqn-klhr~agpedl~ate~~l~r~~~~~g~y~~~fv~ef~~f~~elk 359 (412)
.+.+..+|+-|.+ +=| |.+..+-|.+.+++ .=.+|+-|-|+. .+|-+-+..+| ..+++=.+.|.-|...++
T Consensus 18 ~~d~~elr~e~~~~EG~~GiS~R~~~~~ls~a~~~~~~~~~i~p~~vl--~~L~~~l~~~~-~i~~e~~~~y~~~l~~v~ 94 (254)
T PF06798_consen 18 KIDVKELREEARRDEGMSGISPRFVIKILSNALSSDSEEDCINPLDVL--NELEEGLKDHP-SISEEERERYLEFLKSVR 94 (254)
T ss_pred cchHHHHHhhcccccCCCCCCHhHHHHHHHHHHHhCcccceecHHHHH--HHHHHHhhccc-ccCHHHHHHHHHHHHHHH
Confidence 3344455544443 223 48888889999988 778899998854 23334444333 344444777888999999
Q ss_pred hhhccCChHHHHHHHhhhccHHHHHHHHHHHHh
Q 015140 360 DFFNAGSLAEQLDSIRESLDEQAASALSSFLEC 392 (412)
Q Consensus 360 ~ffna~~~~~~l~~~~~~~~~~~~~~~~~f~~~ 392 (412)
..++-.-..|-.+++--+..+..+..++.++..
T Consensus 95 ~~Y~~~v~~EV~~A~~~~~ee~~~~l~~nYl~~ 127 (254)
T PF06798_consen 95 KEYDERVEKEVQEAFYYSYEEQIQNLFENYLDH 127 (254)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 999988888888888878888888888888763
No 87
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=22.68 E-value=2.8e+02 Score=22.95 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=32.7
Q ss_pred EEEEEEeecCCCCEEEEEeCCCCcCCCCccccCeeeC-CcEEEEEE-ecCCceEEEEEEEEe
Q 015140 13 ISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSE-SGWLCDLE-FKGGESIEYKFVIVR 72 (412)
Q Consensus 13 V~F~I~yqT~~GE~V~VvGS~~eLGnWdkAv~Ms~td-g~W~veV~-lp~gt~~EYKYvI~d 72 (412)
++|+|=. ...+.|.|+.... -+.+ ..++|.-.+ |.|.+.+. +..| ..|+|.|..
T Consensus 11 ~~F~vwA--P~A~~V~L~l~~~-~~~~-~~~~m~~~~~GvW~~~v~~~~~g--~~Y~y~i~g 66 (103)
T cd02856 11 CNFAVHS--ENATRIELCLFDE-DGSE-TRLPLTEEYGGVWHGFLPGIKAG--QRYGFRVHG 66 (103)
T ss_pred eEEEEEC--CCCCEEEEEEEeC-CCCE-EEEEcccccCCEEEEEECCCCCC--CEEEEEECC
Confidence 4566522 2357888887432 1112 456787655 59998885 3444 479998854
No 88
>COG5466 Predicted small metal-binding protein [Function unknown]
Probab=22.36 E-value=1.6e+02 Score=23.50 Aligned_cols=40 Identities=30% Similarity=0.418 Sum_probs=31.3
Q ss_pred CcCCCCchhhHHHHHHHHHHhhhccCCCChhHHHHHHhhcCCCCCcccccccccccchhccccc-cCCCChhHHHHHHHH
Q 015140 234 GHHRPNRHAEISRLIFRELEQISCRKDASPQEVLVIRKIHPCLPSFKAEFTASVPLTRIRDIAH-RNDIPHDLKLEIKHT 312 (412)
Q Consensus 234 ~h~rpn~ha~~~r~~f~~le~~~~~~~~~~~~~~~~r~~~p~lpsf~~eft~~~pltrirdiah-r~dip~dlk~eikht 312 (412)
=|-|-+.-+|+-|+|+.-.+. +| .-.|++|++.-|||.
T Consensus 17 f~~~a~~~~Ev~~~iv~H~k~-----------------------------------------~Hg~t~I~ed~in~Ik~r 55 (59)
T COG5466 17 FEARADSEAEVMRRIVEHAKE-----------------------------------------AHGETEIREDMINKIKSR 55 (59)
T ss_pred ceeccCcHHHHHHHHHHHHHH-----------------------------------------hcCCccccHHHHHHHHHH
Confidence 366678888999999877776 44 345789999999998
Q ss_pred Hh
Q 015140 313 IQ 314 (412)
Q Consensus 313 iq 314 (412)
|.
T Consensus 56 Ik 57 (59)
T COG5466 56 IK 57 (59)
T ss_pred hh
Confidence 85
No 89
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=21.78 E-value=64 Score=24.93 Aligned_cols=18 Identities=28% Similarity=0.669 Sum_probs=15.3
Q ss_pred cCCCChhHHHHHHHHHhh
Q 015140 298 RNDIPHDLKLEIKHTIQN 315 (412)
Q Consensus 298 r~dip~dlk~eikhtiqn 315 (412)
..|||.||.++||..|-.
T Consensus 39 ~~~~~~el~~~ir~~I~~ 56 (57)
T PF06348_consen 39 MTEIPEELREKIRSAIKD 56 (57)
T ss_pred CccCCHHHHHHHHHHhhc
Confidence 457999999999998865
No 90
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=21.32 E-value=1.6e+02 Score=28.57 Aligned_cols=69 Identities=13% Similarity=0.244 Sum_probs=36.3
Q ss_pred HHHHHHHhhhccCCCChhHHHHHHhhcCCCCCcccc----cc-----cccccchhccccccCCCChhHHHHHHHHHhhhh
Q 015140 247 LIFRELEQISCRKDASPQEVLVIRKIHPCLPSFKAE----FT-----ASVPLTRIRDIAHRNDIPHDLKLEIKHTIQNKL 317 (412)
Q Consensus 247 ~~f~~le~~~~~~~~~~~~~~~~r~~~p~lpsf~~e----ft-----~~~pltrirdiahr~dip~dlk~eikhtiqnkl 317 (412)
..+..-+++.++......+..+|.+.--.|+++.++ ++ ...|. .|..-..++.+.++.|++.|++++
T Consensus 128 la~~~A~kil~~~~d~~~~~~lid~~i~~l~~l~~~~~~~l~~~~~~~~~~~----~v~sa~~l~~~~~~~i~~~l~~~~ 203 (246)
T TIGR03321 128 EVFAIARKVLTDLADTDLEERMVDVFVQRLRTLDPDEKAALAEALADSGNPV----LVRSAFELPEEQREQIRDTIRETL 203 (246)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhCCCCce----EEEecCCCCHHHHHHHHHHHHHHH
Confidence 334444455544433334445555555556666444 20 11110 112233457888999999999988
Q ss_pred cc
Q 015140 318 HR 319 (412)
Q Consensus 318 hr 319 (412)
++
T Consensus 204 ~~ 205 (246)
T TIGR03321 204 GP 205 (246)
T ss_pred CC
Confidence 65
No 91
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=21.15 E-value=1.5e+02 Score=30.16 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=35.5
Q ss_pred ccCCcchh--HHHHHHHhhhhc---------CCCCCcHHHHHHHHHHHHHHHhhhcc
Q 015140 319 RNAGPEDL--VATEAMLAKITK---------NPGEYSESFVEQFKMFHSELKDFFNA 364 (412)
Q Consensus 319 r~agpedl--~ate~~l~r~~~---------~~g~y~~~fv~ef~~f~~elk~ffna 364 (412)
.++||-.+ -..+||.+.++. .++..+.+|.+-|+.-.+-||+|||+
T Consensus 7 ~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~ 63 (360)
T PRK05355 7 FSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNI 63 (360)
T ss_pred ccCCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 68898765 234555554422 27999999999999999999999996
No 92
>PF12040 DUF3526: Domain of unknown function (DUF3526); InterPro: IPR021913 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 149 to 170 amino acids in length. This domain has a single completely conserved residue P that may be functionally important.
Probab=21.08 E-value=92 Score=28.23 Aligned_cols=50 Identities=24% Similarity=0.420 Sum_probs=37.6
Q ss_pred hhhhcccCCc-chhHHHHHHHhhhhcCCCCCcHHHHHHHHHHHHHHHhhhc
Q 015140 314 QNKLHRNAGP-EDLVATEAMLAKITKNPGEYSESFVEQFKMFHSELKDFFN 363 (412)
Q Consensus 314 qnklhr~agp-edl~ate~~l~r~~~~~g~y~~~fv~ef~~f~~elk~ffn 363 (412)
||.|.|-.|= -=.+++..++.++..+.=.=-.+|.++-+.|+..|++|||
T Consensus 76 Q~~l~~~~~~lsP~la~q~~s~~lAgTD~~~~~~F~~qae~yr~~~r~~~~ 126 (156)
T PF12040_consen 76 QNRLARRLGWLSPALAVQSLSMRLAGTDLAHHLDFLQQAEAYRRQLRQFFN 126 (156)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554441 1257888888888866555567899999999999999999
No 93
>PLN02486 aminoacyl-tRNA ligase
Probab=21.03 E-value=2.5e+02 Score=29.59 Aligned_cols=67 Identities=24% Similarity=0.378 Sum_probs=41.2
Q ss_pred CceeeccCCCcCCCCchhhHHHHHHHHHHhhhccCCCChhHHHHHHhhcCCCCCccc---ccccccccchhccccccCCC
Q 015140 225 GKIPCFEDGGHHRPNRHAEISRLIFRELEQISCRKDASPQEVLVIRKIHPCLPSFKA---EFTASVPLTRIRDIAHRNDI 301 (412)
Q Consensus 225 g~i~c~e~g~h~rpn~ha~~~r~~f~~le~~~~~~~~~~~~~~~~r~~~p~lpsf~~---eft~~~pltrirdiahr~di 301 (412)
+-|||..|= -.|=+++|+|.+.+-.. +..++ .|+.||+... -...|.|=+.|= -.|=
T Consensus 221 ~lVPvG~DQ-----d~~~~ltRdia~r~~~~--------kp~~~---~~~~lp~L~g~~~KMSkS~~nsaI~----L~D~ 280 (383)
T PLN02486 221 CLIPCAIDQ-----DPYFRMTRDVAPRLGYY--------KPALI---ESRFFPALQGESGKMSASDPNSAIY----VTDT 280 (383)
T ss_pred ceeecccch-----HHHHHHHHHHHHHhCCC--------Cccee---ccccccCCCCCCCcCcCcCCCCeee----ccCC
Confidence 468888884 35778999998776321 11122 3788999986 567787754442 2344
Q ss_pred ChhHHHHHHH
Q 015140 302 PHDLKLEIKH 311 (412)
Q Consensus 302 p~dlk~eikh 311 (412)
|.++++=|+.
T Consensus 281 p~~i~~KI~k 290 (383)
T PLN02486 281 PKEIKNKINK 290 (383)
T ss_pred HHHHHHHHhc
Confidence 5555554443
No 94
>PLN02373 soluble inorganic pyrophosphatase
Probab=21.03 E-value=61 Score=31.08 Aligned_cols=54 Identities=22% Similarity=0.199 Sum_probs=38.1
Q ss_pred hccccccCCCChhHHHHHHHHH------hhhhcccCCcchhHHHHHHHhhhhcCCCCCcHHHHHHH
Q 015140 292 IRDIAHRNDIPHDLKLEIKHTI------QNKLHRNAGPEDLVATEAMLAKITKNPGEYSESFVEQF 351 (412)
Q Consensus 292 irdiahr~dip~dlk~eikhti------qnklhr~agpedl~ate~~l~r~~~~~g~y~~~fv~ef 351 (412)
|.|| +|+|..+.+||+|-. ++|--+-.|..|.-++..+++.-.+ .|.+-|++++
T Consensus 127 i~dl---~Dl~~~~l~~I~~fF~~YK~legK~v~v~g~~~~~~A~~~I~~~~~---~y~~~~~~~~ 186 (188)
T PLN02373 127 YTDI---KELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPAEAAIEAIQYSMD---LYAEYIVESL 186 (188)
T ss_pred CCCh---HHCCHHHHHHHHHHHHHhcccCCCeEEeCCccCHHHHHHHHHHHHH---HHHHHHHHhh
Confidence 4555 689999999999854 4677777888888887777765443 3555555544
No 95
>cd08818 CARD_MDA5_1 Caspase activation and recruitment domain found in MDA5, first repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), first repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-
Probab=21.00 E-value=1.3e+02 Score=25.73 Aligned_cols=34 Identities=26% Similarity=0.518 Sum_probs=26.5
Q ss_pred ChhHHHHHHHHHhhhhcccCCcchhHHHHHHHhhhhc---CCCC
Q 015140 302 PHDLKLEIKHTIQNKLHRNAGPEDLVATEAMLAKITK---NPGE 342 (412)
Q Consensus 302 p~dlk~eikhtiqnklhr~agpedl~ate~~l~r~~~---~~g~ 342 (412)
|.|.|++|..+..|| || ..|.+.+|.++.+ .||=
T Consensus 32 ~~e~ke~I~a~~~~~-----Gn--~~AA~~LL~~l~~~~~~~GW 68 (88)
T cd08818 32 EAEVKERIRAAAATR-----GN--IAAAELLLSTLEKGTWDPGW 68 (88)
T ss_pred CHHHHHHHHHHHHcc-----Cc--HHHHHHHHHHHHHhccCCch
Confidence 778888887776554 54 6799999999998 7774
No 96
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=21.00 E-value=2.5e+02 Score=28.22 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=31.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHhhhcc----------CChHHHHHHHhhhc
Q 015140 340 PGEYSESFVEQFKMFHSELKDFFNA----------GSLAEQLDSIRESL 378 (412)
Q Consensus 340 ~g~y~~~fv~ef~~f~~elk~ffna----------~~~~~~l~~~~~~~ 378 (412)
.+.++..|.+.|..-.+.|++|||| +|-++-++.+-.++
T Consensus 35 ~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l 83 (355)
T cd00611 35 MSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNL 83 (355)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc
Confidence 4566689999999999999999997 44777777776555
No 97
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=20.74 E-value=1.1e+02 Score=29.97 Aligned_cols=79 Identities=24% Similarity=0.312 Sum_probs=49.9
Q ss_pred HHHHhhcCCCCC----ccccccc--ccccchhccccccCCCChhHHHHHHHHHhhhhcccCCcchhHHHHHHHhhhhcCC
Q 015140 267 LVIRKIHPCLPS----FKAEFTA--SVPLTRIRDIAHRNDIPHDLKLEIKHTIQNKLHRNAGPEDLVATEAMLAKITKNP 340 (412)
Q Consensus 267 ~~~r~~~p~lps----f~~eft~--~~pltrirdiahr~dip~dlk~eikhtiqnklhr~agpedl~ate~~l~r~~~~~ 340 (412)
-++.+|.+.||. |-+.|.- ||-|..=..-++=|||..+|- ..=.+||+ .|+.|+ .+|...+
T Consensus 13 ~l~~~i~~~~p~~~~~yvEPF~Gggsv~l~~~~~~~~lND~n~~Li-~~~~~i~~------~~~~l~------~~l~~~~ 79 (266)
T TIGR00571 13 SLLPEIKKHLPKNFNCLVEPFVGGGAVFFNLNPKRYLLNDINEDLI-NLYKAIKN------NVDELI------LDVRKLY 79 (266)
T ss_pred HHHHHHHHhcCcccCEEEEecCCcchhheeecCcEEEEecCCHHHH-HHHHHHHH------CHHHHH------HHHHHHH
Confidence 356677788875 4556654 777765455577799999998 45566776 355554 3344322
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhcc
Q 015140 341 GEYSESFVEQFKMFHSELKDFFNA 364 (412)
Q Consensus 341 g~y~~~fv~ef~~f~~elk~ffna 364 (412)
-.|+ =+.+|.++|+.||.
T Consensus 80 ~~~~------~~e~y~~~r~~~~~ 97 (266)
T TIGR00571 80 AEEN------TKEYYYEVREDFNK 97 (266)
T ss_pred Hhcc------CHHHHHHHHHHhcc
Confidence 2231 15677788888875
No 98
>smart00311 PWI PWI, domain in splicing factors.
Probab=20.43 E-value=1.9e+02 Score=23.08 Aligned_cols=46 Identities=24% Similarity=0.191 Sum_probs=35.8
Q ss_pred HHHHHHHhhhhcccCCcchhHHHHHHHhhhhcCCCCCcHHHHHHHHHH
Q 015140 307 LEIKHTIQNKLHRNAGPEDLVATEAMLAKITKNPGEYSESFVEQFKMF 354 (412)
Q Consensus 307 ~eikhtiqnklhr~agpedl~ate~~l~r~~~~~g~y~~~fv~ef~~f 354 (412)
..||.-|..|++.--|++|=+..+..+..+...+ .+++.+.|.+.+
T Consensus 7 ~~lk~WI~~kv~e~LG~~d~~vvd~i~~~l~~~~--~~~~l~~~L~~~ 52 (74)
T smart00311 7 DEIKPWITKKVIEFLGFEEDTLVEFILSQIRQHK--GPQAKLLQINLT 52 (74)
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC--ChHHHHHHHHhh
Confidence 5788999999999999999888888888887544 566666655554
Done!