Query 015141
Match_columns 412
No_of_seqs 134 out of 178
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 03:30:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02910 polygalacturonate 4-a 100.0 3E-107 7E-112 846.1 29.6 326 82-411 46-384 (657)
2 PLN02769 Probable galacturonos 100.0 1.1E-85 2.3E-90 686.6 25.3 216 194-411 153-369 (629)
3 PLN02829 Probable galacturonos 100.0 6.4E-78 1.4E-82 626.8 22.5 196 215-411 175-370 (639)
4 PLN02742 Probable galacturonos 100.0 2.8E-73 6.1E-78 585.3 19.0 196 215-411 66-266 (534)
5 PLN02718 Probable galacturonos 100.0 1.1E-68 2.3E-73 557.2 24.3 193 218-411 160-352 (603)
6 PLN02867 Probable galacturonos 100.0 5.8E-55 1.3E-59 450.3 13.3 153 258-411 95-250 (535)
7 PLN02870 Probable galacturonos 100.0 2.6E-52 5.5E-57 429.9 14.1 140 264-411 103-245 (533)
8 PLN02659 Probable galacturonos 100.0 2.5E-50 5.5E-55 415.2 13.2 137 267-411 107-246 (534)
9 PLN02523 galacturonosyltransfe 100.0 2.6E-49 5.6E-54 409.2 16.6 188 222-411 81-287 (559)
10 PF10819 DUF2564: Protein of u 81.9 3.4 7.4E-05 34.8 5.2 69 252-321 6-78 (79)
11 TIGR02977 phageshock_pspA phag 68.4 12 0.00026 35.5 5.8 108 218-325 26-137 (219)
12 PF09738 DUF2051: Double stran 59.7 1.3E+02 0.0029 30.7 11.5 105 163-267 7-130 (302)
13 PF04012 PspA_IM30: PspA/IM30 55.8 28 0.00062 32.5 5.8 108 218-325 25-136 (221)
14 PRK10698 phage shock protein P 48.7 41 0.0009 32.4 5.8 105 219-323 27-135 (222)
15 PRK10132 hypothetical protein; 44.5 87 0.0019 27.5 6.6 76 248-325 15-90 (108)
16 COG0091 RplV Ribosomal protein 44.3 15 0.00032 33.0 1.9 24 387-410 58-86 (120)
17 COG4575 ElaB Uncharacterized c 44.1 83 0.0018 27.9 6.3 75 248-324 11-86 (104)
18 PRK15171 lipopolysaccharide 1, 42.5 24 0.00052 35.7 3.2 41 369-411 23-65 (334)
19 PF11464 Rbsn: Rabenosyn Rab b 37.0 73 0.0016 24.1 4.2 38 228-265 1-38 (42)
20 COG4565 CitB Response regulato 36.8 15 0.00033 36.2 0.8 151 179-352 4-168 (224)
21 PF15466 DUF4635: Domain of un 35.8 1.5E+02 0.0033 27.2 6.8 84 229-318 29-115 (135)
22 PF15290 Syntaphilin: Golgi-lo 34.8 63 0.0014 33.3 4.8 39 277-315 121-170 (305)
23 PF13396 PLDc_N: Phospholipase 34.3 30 0.00066 24.9 1.9 27 17-43 18-46 (46)
24 PRK10807 paraquat-inducible pr 30.8 95 0.0021 33.9 5.7 14 219-232 409-422 (547)
25 PF06785 UPF0242: Uncharacteri 25.7 3.8E+02 0.0082 28.6 8.6 105 226-332 109-225 (401)
26 cd08915 V_Alix_like Protein-in 25.1 6.7E+02 0.015 25.2 10.1 29 219-247 122-150 (342)
27 PF14282 FlxA: FlxA-like prote 24.6 2.7E+02 0.0058 24.0 6.3 32 248-279 18-49 (106)
28 PF06103 DUF948: Bacterial pro 22.7 1.3E+02 0.0027 24.6 3.8 61 252-318 22-82 (90)
29 KOG2391 Vacuolar sorting prote 22.6 2.1E+02 0.0045 30.4 6.1 52 281-332 226-277 (365)
30 PRK10404 hypothetical protein; 22.5 3.3E+02 0.0072 23.6 6.5 79 244-324 4-83 (101)
31 PF10073 DUF2312: Uncharacteri 21.6 2.5E+02 0.0054 23.6 5.3 48 252-309 4-53 (74)
32 cd09236 V_AnPalA_UmRIM20_like 20.2 5.6E+02 0.012 26.2 8.6 33 211-247 119-151 (353)
No 1
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=100.00 E-value=3e-107 Score=846.06 Aligned_cols=326 Identities=42% Similarity=0.673 Sum_probs=309.3
Q ss_pred HHHHHHHhccCCCCceeccccccCCCCcCcEEecccccccccCCC----CCCcc-------chhhhhcCCCCCCCCCccC
Q 015141 82 DVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSVENNATS----EPNQK-------AVRIEKEAPKGKGDNILAD 150 (412)
Q Consensus 82 e~id~i~~~~~~~G~l~l~~~~~~~ls~sw~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~~~ 150 (412)
++||+++||++..|.++|..|++++||+||++++|.+.+++++.. ++... .+...++ .+++++++ +
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~ 122 (657)
T PLN02910 46 KDINIVATYSDTSGNIRLGRVKMKDLSASWVLENPADKVHDQPKGSQRLEDSSSFQNGTGEEDNVSHS--TTNQTDES-G 122 (657)
T ss_pred cchhhheeeecccccEEEEeeeeccccchhhhcCccccccCcccccccccchhhhccCcccccchhhh--hhhccccc-c
Confidence 789999999999999999999999999999999999999888732 22221 2333333 36777777 7
Q ss_pred CCCCC--CCCHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHhhcccccccccccccccccccCCCCchhHHHHh
Q 015141 151 GHSQL--VDTPAKQFRRQLRERRREKRAADLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLM 228 (412)
Q Consensus 151 ~~~~~--~~~p~~~~~~~~r~~~~~~r~~~l~~~d~e~~~~~e~~ai~rsk~~d~~~~g~y~iWr~e~e~~~~Ds~vr~l 228 (412)
++.++ +++|+||+||++|++||+.|++||++||+|++.++|++||+|||+||++++|||||||+||++.|+|++||+|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~d~~~~g~y~~w~~e~~~~~~d~~vk~l 202 (657)
T PLN02910 123 IQFPNKLPASPVKLQRQILRQERRDLRTAELIQQDKEADSQTQAAAIERSKSLDTSVKGKYSIWRRDYESPNSDSILKLM 202 (657)
T ss_pred ccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhhhHHHhhhhhccCcccccceeeecccccccCcHHHHHHH
Confidence 77777 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHHHhcccccCccCCCCHHHHHHHHHHHHHHhhccccChHHHHHHHHH
Q 015141 229 RDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRA 308 (412)
Q Consensus 229 kDQli~AKaY~~iAk~~nn~~L~~EL~~~Ire~qr~L~eA~~D~dLp~~a~~kik~M~~~L~kAK~~~yDc~~~~~KLRa 308 (412)
||||||||||++|||++||++|+|||++||||+||+||+|++|+|||+++.++|++|+++|++||+++|||+++++|||+
T Consensus 203 kDQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~ls~a~~d~dlp~~~~~k~~~M~~~l~~ak~~~~d~~~~~~KLra 282 (657)
T PLN02910 203 RDQIIMAKAYANIAKSNNVTNLYVSLMKQFRENKRAIGEATSDAELHSSALDQAKAMGHVLSIAKDQLYDCHTMARKLRA 282 (657)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHhcccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhhccCCCccccccchhhHHhhhCCCCCCCCCCCCCccCCCcceEEEEeCceeeehhhh
Q 015141 309 MLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVV 388 (412)
Q Consensus 309 mL~~~Eeqv~~~kkQs~fl~qLAAktiPKsLHCLsmRLT~EY~~~~~~~~~~p~~ekLeDpsLyHYaIFSDNVLAASVVV 388 (412)
||+++||+++++|+|++||+||||+|||||||||+||||+|||.+++.++++|++|+|+||+||||||||||||||||||
T Consensus 283 ml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~mRLt~Ey~~~~~~~~~~p~~~~l~dp~l~Hy~ifSDNVLAaSVVV 362 (657)
T PLN02910 283 MLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFLLGFQNKDYVNKKKLEDPSLYHYAIFSDNVLATSVVV 362 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHhCchhhccCCChhhccCCcceeEEEEecceeeEEeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccccCCeEEEEEecccC
Q 015141 389 NSTIMNAKVCRLLILLHCCLNAL 411 (412)
Q Consensus 389 NSTV~nAkeP~k~VvFHvVTd~~ 411 (412)
||||+||++|+|+| ||||||++
T Consensus 363 nSTv~na~~P~k~V-FHiVTD~~ 384 (657)
T PLN02910 363 NSTVLHAKEPQKHV-FHIVTDKL 384 (657)
T ss_pred hhhhhcccCccceE-EEEecCcc
Confidence 99999999999998 99999987
No 2
>PLN02769 Probable galacturonosyltransferase
Probab=100.00 E-value=1.1e-85 Score=686.61 Aligned_cols=216 Identities=37% Similarity=0.608 Sum_probs=210.7
Q ss_pred HHhhcccccccccccccccccccCCCCchhHHHHhHHHHHHHHhh-hhhhccCCCchhHHHHHHHHHHHHHHhcccccCc
Q 015141 194 AIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVY-LSIAKMKNKPDLQQELQSRLKESQRALGDTAADA 272 (412)
Q Consensus 194 ai~rsk~~d~~~~g~y~iWr~e~e~~~~Ds~vr~lkDQli~AKaY-~~iAk~~nn~~L~~EL~~~Ire~qr~L~eA~~D~ 272 (412)
+.|.+|+|+- +||+|||||+||++.|+|++||+||||||||||| ++|||++||++|+|||++||||+||+||||++|+
T Consensus 153 ~~e~~~~c~~-~~g~y~~w~~e~~~~~~d~~~~~l~Dql~~Ak~y~~~iak~~~~~~l~~el~~~i~e~~~~l~~~~~d~ 231 (629)
T PLN02769 153 EDENEKSCEL-EFGSYCLWSEEHKEVMKDSIVKRLKDQLFVARAYYPSIAKLPGQEKLTRELKQNIQEHERVLSESITDA 231 (629)
T ss_pred ccccccccee-eccceeeecccccccCcHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3366788875 8999999999999999999999999999999998 6999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccCCCccccccchhhHHhhh
Q 015141 273 DLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYL 352 (412)
Q Consensus 273 dLp~~a~~kik~M~~~L~kAK~~~yDc~~~~~KLRamL~~~Eeqv~~~kkQs~fl~qLAAktiPKsLHCLsmRLT~EY~~ 352 (412)
|||+++.++|++|+++|++||+++|||.+|++||||||+++||+++++++|++||+||||+|||||||||+||||+|||.
T Consensus 232 dlp~~~~~~~~~m~~~~~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l~~laa~t~PK~lHCL~mrLt~ey~~ 311 (629)
T PLN02769 232 DLPPFIQKKLEKMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQTMPKSHHCLSMRLTVEYFK 311 (629)
T ss_pred cCChhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccCCCcceEEEEeCceeeehhhhHhhhhcccccCCeEEEEEecccC
Q 015141 353 LPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKVCRLLILLHCCLNAL 411 (412)
Q Consensus 353 ~~~~~~~~p~~ekLeDpsLyHYaIFSDNVLAASVVVNSTV~nAkeP~k~VvFHvVTd~~ 411 (412)
+++.++++|++|+|+||+||||||||||||||||||||||+||++|+++| ||||||++
T Consensus 312 ~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvlAasvvvNStv~na~~p~~~V-FHiVTD~~ 369 (629)
T PLN02769 312 SSSLDMEDSNSEKFSDPSLRHYVIFSKNVLAASVVINSTVVHSRESGNIV-FHVLTDAQ 369 (629)
T ss_pred CchhhccCCchhhccCCccceEEEEeccceeeeeehhhhhhhccCccceE-EEEecChh
Confidence 99999999999999999999999999999999999999999999999998 99999986
No 3
>PLN02829 Probable galacturonosyltransferase
Probab=100.00 E-value=6.4e-78 Score=626.80 Aligned_cols=196 Identities=51% Similarity=0.800 Sum_probs=193.0
Q ss_pred ccCCCCchhHHHHhHHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHHHhcccccCccCCCCHHHHHHHHHHHHHHhhc
Q 015141 215 ENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKARE 294 (412)
Q Consensus 215 e~e~~~~Ds~vr~lkDQli~AKaY~~iAk~~nn~~L~~EL~~~Ire~qr~L~eA~~D~dLp~~a~~kik~M~~~L~kAK~ 294 (412)
-.++.|+|++||+|||||||||||++|||++||++|+|||++||||+||+||||++|+|||+++.++|++|+++|++||+
T Consensus 175 ~~~~~~~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e~~r~l~~a~~d~~lp~~~~~~~~~m~~~i~~ak~ 254 (639)
T PLN02829 175 TDQTVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEVQRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQ 254 (639)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHh
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccCCCccccccchhhHHhhhCCCCCCCCCCCCCccCCCcceE
Q 015141 295 QLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHY 374 (412)
Q Consensus 295 ~~yDc~~~~~KLRamL~~~Eeqv~~~kkQs~fl~qLAAktiPKsLHCLsmRLT~EY~~~~~~~~~~p~~ekLeDpsLyHY 374 (412)
++|||+++++|||+||+++||++++||+|++||+||||+|+|||||||+||||+|||.++++++++|++|+|+||+||||
T Consensus 255 ~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~~~~~~~~p~~~~l~dp~l~Hy 334 (639)
T PLN02829 255 MQDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSSEQQFPNQEKLEDPQLYHY 334 (639)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCChhhccCCChhhccCCccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCceeeehhhhHhhhhcccccCCeEEEEEecccC
Q 015141 375 ALFSDNVLAASVVVNSTIMNAKVCRLLILLHCCLNAL 411 (412)
Q Consensus 375 aIFSDNVLAASVVVNSTV~nAkeP~k~VvFHvVTd~~ 411 (412)
||||||||||||||||||+||++|+|+| ||||||++
T Consensus 335 ~ifSdNVLAasVVVnStv~na~~p~k~V-FHivTD~~ 370 (639)
T PLN02829 335 ALFSDNVLAAAVVVNSTVTNAKHPSKHV-FHIVTDRL 370 (639)
T ss_pred EEEecceeEEEeeeehhhhcccCccceE-EEEecCcc
Confidence 9999999999999999999999999998 99999987
No 4
>PLN02742 Probable galacturonosyltransferase
Probab=100.00 E-value=2.8e-73 Score=585.27 Aligned_cols=196 Identities=32% Similarity=0.471 Sum_probs=189.2
Q ss_pred ccCCCCchhHHHHhHHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHHHhcccccCccC--CCCHHHHHHHHHHHHHHh
Q 015141 215 ENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADL--HHSVPEKIKLMGQVLSKA 292 (412)
Q Consensus 215 e~e~~~~Ds~vr~lkDQli~AKaY~~iAk~~nn~~L~~EL~~~Ire~qr~L~eA~~D~dL--p~~a~~kik~M~~~L~kA 292 (412)
-.|.+++|++||+|||||||||||++|||++||++|+|||++||||+||+||+|++|+++ |+++.++|+.|+++|++|
T Consensus 66 ~~~~~~~~~~~~~l~dql~~Ak~y~~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~a 145 (534)
T PLN02742 66 TEEMLSATSFSRQLADQITLAKAYVVIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQA 145 (534)
T ss_pred hhhhcChHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999985 489999999999999999
Q ss_pred hccccChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccCCCccccccchhhHHhhhCCCCC---CCCCCCCCccCC
Q 015141 293 REQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEK---RKFPGSENLENP 369 (412)
Q Consensus 293 K~~~yDc~~~~~KLRamL~~~Eeqv~~~kkQs~fl~qLAAktiPKsLHCLsmRLT~EY~~~~~~~---~~~p~~ekLeDp 369 (412)
|+++|||+++++|||+||+++||++++||+|++||+||||+|+|||||||+||||+|||++++++ .++|+.++|+||
T Consensus 146 k~~~~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~ 225 (534)
T PLN02742 146 QDLHYDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEALPKSLYCLGVRLTTEWFKNPKLQRKAEEKRNSPRLVDN 225 (534)
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHhHHHHHhCchhhhccccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999995 446788999999
Q ss_pred CcceEEEEeCceeeehhhhHhhhhcccccCCeEEEEEecccC
Q 015141 370 NLYHYALFSDNVLAASVVVNSTIMNAKVCRLLILLHCCLNAL 411 (412)
Q Consensus 370 sLyHYaIFSDNVLAASVVVNSTV~nAkeP~k~VvFHvVTd~~ 411 (412)
+||||||||||||||||||||||+||++|+|+| ||||||++
T Consensus 226 ~l~Hy~ifSdNvlAasvvvnStv~nsk~P~~~V-FHiVTD~~ 266 (534)
T PLN02742 226 NLYHFCVFSDNILATSVVVNSTVSNAKHPDQLV-FHLVTDEV 266 (534)
T ss_pred CcceEEEEeccchhhhhhhhhhHhhhcCCCcEE-EEEeechh
Confidence 999999999999999999999999999999998 99999985
No 5
>PLN02718 Probable galacturonosyltransferase
Probab=100.00 E-value=1.1e-68 Score=557.17 Aligned_cols=193 Identities=45% Similarity=0.721 Sum_probs=190.6
Q ss_pred CCCchhHHHHhHHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHHHhcccccCccCCCCHHHHHHHHHHHHHHhhcccc
Q 015141 218 NDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLY 297 (412)
Q Consensus 218 ~~~~Ds~vr~lkDQli~AKaY~~iAk~~nn~~L~~EL~~~Ire~qr~L~eA~~D~dLp~~a~~kik~M~~~L~kAK~~~y 297 (412)
..|+|++||+|||||||||||++|||++||++|+|||++||||+||+||+|+.|+|||+++.++|++|+++|++||+++|
T Consensus 160 ~~~~d~~v~~~~dql~~ak~y~~~a~~~~~~~~~~el~~~i~e~~~~l~~~~~d~~lp~~~~~~~~~m~~~~~~a~~~~~ 239 (603)
T PLN02718 160 RRATDEKVKEIRDKIIQAKAYLNLAPPGSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYKASRVFP 239 (603)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHHHHHhccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccCCCccccccchhhHHhhhCCCCCCCCCCCCCccCCCcceEEEE
Q 015141 298 DCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALF 377 (412)
Q Consensus 298 Dc~~~~~KLRamL~~~Eeqv~~~kkQs~fl~qLAAktiPKsLHCLsmRLT~EY~~~~~~~~~~p~~ekLeDpsLyHYaIF 377 (412)
||.+|++|||||++++||++++||+|++||+||||+|+|||||||+||||+|||.++++++++|++|+|+||++||||+|
T Consensus 240 d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa~~~PK~lhCL~~rLt~ey~~~~~~~~~~~~~~~l~d~~~~Hia~~ 319 (603)
T PLN02718 240 NCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYFALDPEKRQLPNQQRYNDPDLYHYVVF 319 (603)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHhhCChhhccCCChhhccCCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCceeeehhhhHhhhhcccccCCeEEEEEecccC
Q 015141 378 SDNVLAASVVVNSTIMNAKVCRLLILLHCCLNAL 411 (412)
Q Consensus 378 SDNVLAASVVVNSTV~nAkeP~k~VvFHvVTd~~ 411 (412)
||||+|+||||||++.||++|+++| ||||||++
T Consensus 320 sDNvlaasVvInSil~Ns~np~~iv-FHVvTD~i 352 (603)
T PLN02718 320 SDNVLACSVVVNSTISSSKEPEKIV-FHVVTDSL 352 (603)
T ss_pred cCCceeEEEEhhhhhhccCCCCcEE-EEEEeCCC
Confidence 9999999999999999999999987 99999986
No 6
>PLN02867 Probable galacturonosyltransferase
Probab=100.00 E-value=5.8e-55 Score=450.25 Aligned_cols=153 Identities=27% Similarity=0.427 Sum_probs=149.7
Q ss_pred HHHHHHHhcccccCccCCCCHHHHHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccCCC
Q 015141 258 LKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPN 337 (412)
Q Consensus 258 Ire~qr~L~eA~~D~dLp~~a~~kik~M~~~L~kAK~~~yDc~~~~~KLRamL~~~Eeqv~~~kkQs~fl~qLAAktiPK 337 (412)
.+|++|+|+||+.|.++|+.+.++.+.|++++.++++.+|||+++++|||||++++||+++++|+|++||+||||+||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa~t~PK 174 (535)
T PLN02867 95 REELTRALVEAKEQDDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGIPK 174 (535)
T ss_pred HHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhHHhhhCCCCCCCCCCCC---CccCCCcceEEEEeCceeeehhhhHhhhhcccccCCeEEEEEecccC
Q 015141 338 GIHCMSMRLTIEYYLLPPEKRKFPGSE---NLENPNLYHYALFSDNVLAASVVVNSTIMNAKVCRLLILLHCCLNAL 411 (412)
Q Consensus 338 sLHCLsmRLT~EY~~~~~~~~~~p~~e---kLeDpsLyHYaIFSDNVLAASVVVNSTV~nAkeP~k~VvFHvVTd~~ 411 (412)
|||||+||||+|||.++++++++|++| +|+||+||||||||||||||||||||||+||++|+|+| ||||||++
T Consensus 175 ~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~V-fHvvTD~~ 250 (535)
T PLN02867 175 SLHCLCLKLAEEYAVNAMARSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANPEKLV-FHIVTDKK 250 (535)
T ss_pred CccccchhhHHHHHhCchhhccCCChhhhhhccCCCcceEEEEecceeEEEeeeehhhhcccCccceE-EEEecCcc
Confidence 999999999999999999999999887 89999999999999999999999999999999999998 99999986
No 7
>PLN02870 Probable galacturonosyltransferase
Probab=100.00 E-value=2.6e-52 Score=429.94 Aligned_cols=140 Identities=30% Similarity=0.463 Sum_probs=134.1
Q ss_pred HhcccccCccCCCCHHHHHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccCCCcccccc
Q 015141 264 ALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMS 343 (412)
Q Consensus 264 ~L~eA~~D~dLp~~a~~kik~M~~~L~kAK~~~yDc~~~~~KLRamL~~~Eeqv~~~kkQs~fl~qLAAktiPKsLHCLs 343 (412)
--+|++.|++||+++.++|+ +||+.+|||+++++|||+|++++|||++++|+|++|++||||+|||||||||+
T Consensus 103 ~~~~~~~d~~lp~s~~~~~~-------~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~laa~t~PK~lHCL~ 175 (533)
T PLN02870 103 NTEEIPDGLKLPDSFSQLVS-------DMKNNHYDAKTFAFVLRAMMEKFERELRESKFAELMNKHFAASSIPKGIHCLS 175 (533)
T ss_pred ccccccccccCChhHHHHHH-------HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Confidence 34799999999999988877 55889999999999999999999999999999999999999999999999999
Q ss_pred chhhHHhhhCCCCCCCCCCCC---CccCCCcceEEEEeCceeeehhhhHhhhhcccccCCeEEEEEecccC
Q 015141 344 MRLTIEYYLLPPEKRKFPGSE---NLENPNLYHYALFSDNVLAASVVVNSTIMNAKVCRLLILLHCCLNAL 411 (412)
Q Consensus 344 mRLT~EY~~~~~~~~~~p~~e---kLeDpsLyHYaIFSDNVLAASVVVNSTV~nAkeP~k~VvFHvVTd~~ 411 (412)
||||+|||+++++++++|++| +|+||+||||||||||||||||||||||+||++|+|+| ||||||++
T Consensus 176 mrLt~ey~~~~~~~~~~~~~e~~~~l~dp~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~V-FHvvTD~~ 245 (533)
T PLN02870 176 LRLTDEYSSNAHARKQLPSPELLPVLSDNSYHHFVLSTDNILAASVVVSSTVQSSLKPEKIV-FHVITDKK 245 (533)
T ss_pred hhhHHHHHhCchhhhcCCcccccccccCCcceeEEEEecceeEEEeeeehhhhcccCccceE-EEEecCcc
Confidence 999999999999999999877 99999999999999999999999999999999999998 99999986
No 8
>PLN02659 Probable galacturonosyltransferase
Probab=100.00 E-value=2.5e-50 Score=415.25 Aligned_cols=137 Identities=28% Similarity=0.440 Sum_probs=127.6
Q ss_pred ccccCccCCCCHHHHHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccCCCccccccchh
Q 015141 267 DTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRL 346 (412)
Q Consensus 267 eA~~D~dLp~~a~~kik~M~~~L~kAK~~~yDc~~~~~KLRamL~~~Eeqv~~~kkQs~fl~qLAAktiPKsLHCLsmRL 346 (412)
|.+.|.++|.+..+. +.++++.+|||.+|++||||||+++||+++++|+|+.++.||||+|+|||||||+|||
T Consensus 107 e~~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~klr~~l~~~E~~~~~~k~~~~~~~~laa~t~PK~lHCL~mrL 179 (534)
T PLN02659 107 ELKGRSDIPQTLEEF-------MDEVKNSRSDARAFALKLREMVTLLEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRL 179 (534)
T ss_pred ccCCccccchHHHHH-------HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhh
Confidence 566666889875554 4555789999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhCCCCCCCCCCCC---CccCCCcceEEEEeCceeeehhhhHhhhhcccccCCeEEEEEecccC
Q 015141 347 TIEYYLLPPEKRKFPGSE---NLENPNLYHYALFSDNVLAASVVVNSTIMNAKVCRLLILLHCCLNAL 411 (412)
Q Consensus 347 T~EY~~~~~~~~~~p~~e---kLeDpsLyHYaIFSDNVLAASVVVNSTV~nAkeP~k~VvFHvVTd~~ 411 (412)
|+|||+++++++++|++| +|+||+||||||||||||||||||||||+||++|+|+| ||||||++
T Consensus 180 t~ey~~~~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvLAasVVvnStv~~a~~p~~~V-FHivTD~~ 246 (534)
T PLN02659 180 ANEHSTNAAARLQLPLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKFV-LHIITDRK 246 (534)
T ss_pred HHHHHhCchhhhccCCcccccccCCCCcceEEEEecceeEEEeeeehhhhcccCccceE-EEEecCcc
Confidence 999999999999999877 79999999999999999999999999999999999998 99999987
No 9
>PLN02523 galacturonosyltransferase
Probab=100.00 E-value=2.6e-49 Score=409.16 Aligned_cols=188 Identities=34% Similarity=0.525 Sum_probs=156.9
Q ss_pred hhHHHHhHHHHHHHHhhhhhhcc-----CCCchhHHHHHHHHHHHHH-----H-hccc--cc--C--ccCCCCHHHHHHH
Q 015141 222 DSTVRLMRDQMIMARVYLSIAKM-----KNKPDLQQELQSRLKESQR-----A-LGDT--AA--D--ADLHHSVPEKIKL 284 (412)
Q Consensus 222 Ds~vr~lkDQli~AKaY~~iAk~-----~nn~~L~~EL~~~Ire~qr-----~-L~eA--~~--D--~dLp~~a~~kik~ 284 (412)
|.+.|+-.|-..++-||...|.- .....+--+|..+.-++.. . +++. +. | .+||+++.++||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 160 (559)
T PLN02523 81 DQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRLFADLSRNFTDLISKPSYRALLSSDGSAIDEDVLRQFEKEVKERVKV 160 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhcCccccccccccCCcCchHHHhhcchhHHHHHHH
Confidence 45667888889999999887742 1122333344444443221 1 1111 12 2 2589999999999
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccCCCccccccchhhHHhhhCCCCCC--CCCC
Q 015141 285 MGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKR--KFPG 362 (412)
Q Consensus 285 M~~~L~kAK~~~yDc~~~~~KLRamL~~~Eeqv~~~kkQs~fl~qLAAktiPKsLHCLsmRLT~EY~~~~~~~~--~~p~ 362 (412)
|+++|++||+ .|||+++++|||+|++++|||++++|+|++|++||||+|||||||||+||||+|||.+++.++ ++|+
T Consensus 161 ~~~~~~~a~~-~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~ 239 (559)
T PLN02523 161 ARQMIAESKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSLHCLAMRLMEERIAHPEKYKDEGKPP 239 (559)
T ss_pred HHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHhHHHHHhChHhhhccCCCc
Confidence 9999999997 999999999999999999999999999999999999999999999999999999999988754 4566
Q ss_pred CCCccCCCcceEEEEeCceeeehhhhHhhhhcccccCCeEEEEEecccC
Q 015141 363 SENLENPNLYHYALFSDNVLAASVVVNSTIMNAKVCRLLILLHCCLNAL 411 (412)
Q Consensus 363 ~ekLeDpsLyHYaIFSDNVLAASVVVNSTV~nAkeP~k~VvFHvVTd~~ 411 (412)
+++|+||+||||||||||||||||||||||+||++|+++| ||||||++
T Consensus 240 ~~~l~dp~l~Hy~ifSdNvlAAsVvInStv~Ns~~p~~~V-FHIVTD~l 287 (559)
T PLN02523 240 PPELEDPSLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHV-FHVVTDRM 287 (559)
T ss_pred chhccCCCcceEEEecCcchhhhhhHHHHHHccCCCcceE-EEEEeCCC
Confidence 7999999999999999999999999999999999999998 99999986
No 10
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=81.86 E-value=3.4 Score=34.84 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhcccc--cCccCCCCHHHHHHHHHHHHHHhhccc--cChHHHHHHHHHHHHHHHHHHHHHH
Q 015141 252 QELQSRLKESQRALGDTA--ADADLHHSVPEKIKLMGQVLSKAREQL--YDCKLVTGKLRAMLQTADEQVRSLK 321 (412)
Q Consensus 252 ~EL~~~Ire~qr~L~eA~--~D~dLp~~a~~kik~M~~~L~kAK~~~--yDc~~~~~KLRamL~~~Eeqv~~~k 321 (412)
+++...|+--|+++|-|| +|+++-..|...|+....-|.+|++.. .|- .|...=...|+..|.|++.+|
T Consensus 6 kQve~aVetAqkmvG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~at~lD~-~Fl~~~~~~L~~~eHQL~Eak 78 (79)
T PF10819_consen 6 KQVEMAVETAQKMVGQATMSMDPDQLEHATQAVEDAREQLSQAKSHATGLDE-PFLQQSEQLLDDCEHQLDEAK 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHhc
Confidence 577789999999999999 666788899999999998888888655 454 677888889999999998876
No 11
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=68.38 E-value=12 Score=35.51 Aligned_cols=108 Identities=12% Similarity=0.127 Sum_probs=77.8
Q ss_pred CCCchhHHHHhHHHHHHHHhh--hhhhccCCCchhHHHHHHHHHHHHHHhcccccCc--cCCCCHHHHHHHHHHHHHHhh
Q 015141 218 NDNSDSTVRLMRDQMIMARVY--LSIAKMKNKPDLQQELQSRLKESQRALGDTAADA--DLHHSVPEKIKLMGQVLSKAR 293 (412)
Q Consensus 218 ~~~~Ds~vr~lkDQli~AKaY--~~iAk~~nn~~L~~EL~~~Ire~qr~L~eA~~D~--dLp~~a~~kik~M~~~L~kAK 293 (412)
+.+-+-+++.|+|+|.-||.= -.+|..+.-.+=+.++..++.+++.-...|-..+ +|-+.+......-+..+..-+
T Consensus 26 ~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~ 105 (219)
T TIGR02977 26 EKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALE 105 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999888753 4455555555556777788887776655555433 588888777777777777777
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 015141 294 EQLYDCKLVTGKLRAMLQTADEQVRSLKKQST 325 (412)
Q Consensus 294 ~~~yDc~~~~~KLRamL~~~Eeqv~~~kkQs~ 325 (412)
...-.-...+.+|+..|..++.++...+.+-.
T Consensus 106 ~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 106 RELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666778889999999999998887776544
No 12
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=59.67 E-value=1.3e+02 Score=30.75 Aligned_cols=105 Identities=22% Similarity=0.278 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHhhcccc-------cccccccccccccccC---CCCchhHHHHhHHHH
Q 015141 163 FRRQLRERRREKRAADLVQQDDEAIVKLENAAIERSKSV-------DSAVLGKYSIWRKENE---NDNSDSTVRLMRDQM 232 (412)
Q Consensus 163 ~~~~~r~~~~~~r~~~l~~~d~e~~~~~e~~ai~rsk~~-------d~~~~g~y~iWr~e~e---~~~~Ds~vr~lkDQl 232 (412)
++|+.|.+-|+.|-.||.+|-+|....-+..-..++-+. .....|.++--|--.+ ...+++-+|-|||.|
T Consensus 7 akR~araEAR~iRmreLErqqkE~ee~~Dr~~~~~~Sr~~s~ls~~t~~S~~~sSSRRsS~DtSsS~dse~s~r~lk~~l 86 (302)
T PF09738_consen 7 AKRAARAEAREIRMRELERQQKEQEENSDRRYDSSSSRRHSDLSQWTLNSLRGSSSRRSSGDTSSSVDSEASLRDLKDSL 86 (302)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccCCccchhhhcCCCCCCCCCCCCcccccccccccHHHHHHHH
Confidence 578899999999999999998885553333333222111 0122333333333333 334455678888887
Q ss_pred HHH-----HhhhhhhccCCC-chhH---HHHHHHHHHHHHHhcc
Q 015141 233 IMA-----RVYLSIAKMKNK-PDLQ---QELQSRLKESQRALGD 267 (412)
Q Consensus 233 i~A-----KaY~~iAk~~nn-~~L~---~EL~~~Ire~qr~L~e 267 (412)
.=- ||-++-|...|. ..|. .=|+..+-++|..+.+
T Consensus 87 ~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~ 130 (302)
T PF09738_consen 87 AEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQ 130 (302)
T ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 444666666654 1121 2345555555554443
No 13
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=55.75 E-value=28 Score=32.47 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=73.4
Q ss_pred CCCchhHHHHhHHHHHHHHh-h-hhhhccCCCchhHHHHHHHHHHHHHHhcccccCc--cCCCCHHHHHHHHHHHHHHhh
Q 015141 218 NDNSDSTVRLMRDQMIMARV-Y-LSIAKMKNKPDLQQELQSRLKESQRALGDTAADA--DLHHSVPEKIKLMGQVLSKAR 293 (412)
Q Consensus 218 ~~~~Ds~vr~lkDQli~AKa-Y-~~iAk~~nn~~L~~EL~~~Ire~qr~L~eA~~D~--dLp~~a~~kik~M~~~L~kAK 293 (412)
+.+-+-.+|.|.++|.-|+. . -.+|..+.-.+=+.++...+.+++.-...|-.-+ +|-..+..+....+..+...+
T Consensus 25 ~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~ 104 (221)
T PF04012_consen 25 EKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLE 104 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888887775 2 3344444444445566666666666555554333 587888888888888887777
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 015141 294 EQLYDCKLVTGKLRAMLQTADEQVRSLKKQST 325 (412)
Q Consensus 294 ~~~yDc~~~~~KLRamL~~~Eeqv~~~kkQs~ 325 (412)
...-....-+.+|+..|..++.++...+.+-.
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888888888888877665443
No 14
>PRK10698 phage shock protein PspA; Provisional
Probab=48.67 E-value=41 Score=32.39 Aligned_cols=105 Identities=9% Similarity=0.106 Sum_probs=68.9
Q ss_pred CCchhHHHHhHHHHHHHHhh--hhhhccCCCchhHHHHHHHHHHHHHHhccccc--CccCCCCHHHHHHHHHHHHHHhhc
Q 015141 219 DNSDSTVRLMRDQMIMARVY--LSIAKMKNKPDLQQELQSRLKESQRALGDTAA--DADLHHSVPEKIKLMGQVLSKARE 294 (412)
Q Consensus 219 ~~~Ds~vr~lkDQli~AKaY--~~iAk~~nn~~L~~EL~~~Ire~qr~L~eA~~--D~dLp~~a~~kik~M~~~L~kAK~ 294 (412)
.+-+-+++.|+|++.=+|.= -.||..+.-.+=+.++..++.+++.--.-|-. +-+|-+.++..-+.....+..-+.
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~ 106 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEH 106 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777888888776642 33444444445556666677666654444443 235777776666666666666666
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHh
Q 015141 295 QLYDCKLVTGKLRAMLQTADEQVRSLKKQ 323 (412)
Q Consensus 295 ~~yDc~~~~~KLRamL~~~Eeqv~~~kkQ 323 (412)
.+-.....+.+|+..+..++.++..++.+
T Consensus 107 ~~~~~~~~~~~L~~~l~~L~~ki~eak~k 135 (222)
T PRK10698 107 EVTLVDETLARMKKEIGELENKLSETRAR 135 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778888888888888888776644
No 15
>PRK10132 hypothetical protein; Provisional
Probab=44.48 E-value=87 Score=27.52 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=56.0
Q ss_pred chhHHHHHHHHHHHHHHhcccccCccCCCCHHHHHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 015141 248 PDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQST 325 (412)
Q Consensus 248 ~~L~~EL~~~Ire~qr~L~eA~~D~dLp~~a~~kik~M~~~L~kAK~~~yDc~~~~~KLRamL~~~Eeqv~~~kkQs~ 325 (412)
.+|..||+.=+.+++.+|.++..++. .++.+.=...+..|..+|+...|...+..+.|.....+++.++.+--++.
T Consensus 15 e~L~~Dl~~L~~~le~ll~~~~~~~~--~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~sv 90 (108)
T PRK10132 15 QDIQNDVNQLADSLESVLKSWGSDAK--GEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSV 90 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 58889999999999999877765541 12233334455678888877777777778889999999999988766653
No 16
>COG0091 RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
Probab=44.27 E-value=15 Score=32.99 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.4
Q ss_pred hhHhhhhcccc-----cCCeEEEEEeccc
Q 015141 387 VVNSTIMNAKV-----CRLLILLHCCLNA 410 (412)
Q Consensus 387 VVNSTV~nAke-----P~k~VvFHvVTd~ 410 (412)
|++|.+.||.+ |+++||.|+..|+
T Consensus 58 vL~sA~aNAe~n~gLd~d~L~V~~i~v~~ 86 (120)
T COG0091 58 VLESAIANAENNKGLDPDKLVVSHIAVDK 86 (120)
T ss_pred HHHHHHhhHHhccCCChHHEEEEEEEeCC
Confidence 68899999987 9999999999885
No 17
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=44.09 E-value=83 Score=27.95 Aligned_cols=75 Identities=25% Similarity=0.245 Sum_probs=56.8
Q ss_pred chhHHHHHHHHHHHHHHhcccccCccCCCCHHHHHHHHHHHHHHhhccccCh-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 015141 248 PDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDC-KLVTGKLRAMLQTADEQVRSLKKQS 324 (412)
Q Consensus 248 ~~L~~EL~~~Ire~qr~L~eA~~D~dLp~~a~~kik~M~~~L~kAK~~~yDc-~~~~~KLRamL~~~Eeqv~~~kkQs 324 (412)
.++.-||+.=+.+.|.+|.....+++ .++.+.=...+.+|.++|...-+. ..++.+-|+++..+|+-++.+-=|+
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~--~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~ 86 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAG--DEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQG 86 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchh--hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 67888888888999999988876552 233333345667788888776666 7889999999999999998765543
No 18
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=42.50 E-value=24 Score=35.69 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=31.2
Q ss_pred CCcceEEEEeCc--eeeehhhhHhhhhcccccCCeEEEEEecccC
Q 015141 369 PNLYHYALFSDN--VLAASVVVNSTIMNAKVCRLLILLHCCLNAL 411 (412)
Q Consensus 369 psLyHYaIFSDN--VLAASVVVNSTV~nAkeP~k~VvFHvVTd~~ 411 (412)
+.-.|.|+.+|+ +.-++|++.|-+.|. |..-+.|||++|++
T Consensus 23 ~~~i~Iv~~~D~ny~~~~~vsi~Sil~nn--~~~~~~f~Il~~~i 65 (334)
T PRK15171 23 KNSLDIAYGIDKNFLFGCGVSIASVLLNN--PDKSLVFHVFTDYI 65 (334)
T ss_pred CCceeEEEECcHhhHHHHHHHHHHHHHhC--CCCCEEEEEEeCCC
Confidence 357899888776 456889999999983 44333499999986
No 19
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=37.02 E-value=73 Score=24.08 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=33.4
Q ss_pred hHHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHHHh
Q 015141 228 MRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRAL 265 (412)
Q Consensus 228 lkDQli~AKaY~~iAk~~nn~~L~~EL~~~Ire~qr~L 265 (412)
|-+||..=+.|+.-||..+..+=+.-|..+++|++.-+
T Consensus 1 LleQi~~I~~~I~qAk~~~r~dEV~~L~~NL~EL~~e~ 38 (42)
T PF11464_consen 1 LLEQINIIESYIKQAKAARRFDEVATLEENLRELQDEI 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999998754
No 20
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=36.80 E-value=15 Score=36.21 Aligned_cols=151 Identities=15% Similarity=0.252 Sum_probs=83.4
Q ss_pred hhhcchHHHHHHHHHHHhhcccccccccccccccccccCCCCchhHHHHhHHHHHHHHhhhhhhccCCCchhHHHHHHHH
Q 015141 179 LVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRL 258 (412)
Q Consensus 179 l~~~d~e~~~~~e~~ai~rsk~~d~~~~g~y~iWr~e~e~~~~Ds~vr~lkDQli~AKaY~~iAk~~nn~~L~~EL~~~I 258 (412)
|+=.||.-.+.+-..-++..+.|+ ++|--.+ ....-.+++..+-.||+=-.|. +-.+-+.|.+|++.+-
T Consensus 4 LIiEDD~mVaeih~~yv~~~~gF~-------~vg~A~~-~~ea~~~i~~~~pDLILLDiYm---Pd~~Gi~lL~~ir~~~ 72 (224)
T COG4565 4 LIIEDDPMVAEIHRRYVKQIPGFS-------VVGTAGT-LEEAKMIIEEFKPDLILLDIYM---PDGNGIELLPELRSQH 72 (224)
T ss_pred EEEcCchHHHHHHHHHHHhCCCce-------EEEeecc-HHHHHHHHHhhCCCEEEEeecc---CCCccHHHHHHHHhcC
Confidence 344566666666666666666664 4552110 0111223333333444444453 3455689999999776
Q ss_pred HHHHHHhcccccCccCCCCHHH-----------HHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 015141 259 KESQRALGDTAADADLHHSVPE-----------KIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFL 327 (412)
Q Consensus 259 re~qr~L~eA~~D~dLp~~a~~-----------kik~M~~~L~kAK~~~yDc~~~~~KLRamL~~~Eeqv~~~kkQs~fl 327 (412)
.++.-++--|+.|.+.-+++.. .-..+++.|.+-++ -|.+|. ..+++.-...-..|.
T Consensus 73 ~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~-----------~r~~l~-~~~~~sQ~~lD~l~~ 140 (224)
T COG4565 73 YPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQ-----------KRHALE-SHQQLSQKELDQLFN 140 (224)
T ss_pred CCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHH-----------HHHHHh-hhcccCHHHHHHHHh
Confidence 6665555555555543222211 23456666666553 222222 222333333333333
Q ss_pred ---HhhhhccCCCccccccchhhHHhhh
Q 015141 328 ---SQLAAKTIPNGIHCMSMRLTIEYYL 352 (412)
Q Consensus 328 ---~qLAAktiPKsLHCLsmRLT~EY~~ 352 (412)
.+-....+||||+-+.|+...|+|.
T Consensus 141 ~~~k~~~~~~LPkGi~~~Tl~~i~~~~~ 168 (224)
T COG4565 141 IQSKEQPPDDLPKGLDELTLQKVREALK 168 (224)
T ss_pred ccccccCcccCCCCcCHHHHHHHHHHHh
Confidence 2567789999999999999999997
No 21
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=35.84 E-value=1.5e+02 Score=27.23 Aligned_cols=84 Identities=18% Similarity=0.216 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHHHhcccccCc---cCCCCHHHHHHHHHHHHHHhhccccChHHHHHH
Q 015141 229 RDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADA---DLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGK 305 (412)
Q Consensus 229 kDQli~AKaY~~iAk~~nn~~L~~EL~~~Ire~qr~L~eA~~D~---dLp~~a~~kik~M~~~L~kAK~~~yDc~~~~~K 305 (412)
|.|.++|---+.+--.-+-..=.||.+.|||||--.=.-.++-. .+.....+-||.|+.-|... -.-+--|
T Consensus 29 kkQtllaLLiLvLYlgtgisG~sWEvserireCN~~QN~v~sqg~EyQt~epseEPik~~r~WLken------LhvflEk 102 (135)
T PF15466_consen 29 KKQTLLALLILVLYLGTGISGRSWEVSERIRECNYYQNPVASQGFEYQTKEPSEEPIKAIRNWLKEN------LHVFLEK 102 (135)
T ss_pred HHHHHHHHHHHHHHHhcccCCCchhHHhhhhhcCCcCCcccccccccccCCCccchHHHHHHHHHHH------HHHHHHH
Confidence 45666665433333333334456999999999965444444333 35556677799998888543 2334455
Q ss_pred HHHHHHHHHHHHH
Q 015141 306 LRAMLQTADEQVR 318 (412)
Q Consensus 306 LRamL~~~Eeqv~ 318 (412)
|..-++.+|+.++
T Consensus 103 LE~EvreLEQlV~ 115 (135)
T PF15466_consen 103 LEKEVRELEQLVR 115 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 22
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=34.75 E-value=63 Score=33.26 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHHhhcccc-----------ChHHHHHHHHHHHHHHHH
Q 015141 277 SVPEKIKLMGQVLSKAREQLY-----------DCKLVTGKLRAMLQTADE 315 (412)
Q Consensus 277 ~a~~kik~M~~~L~kAK~~~y-----------Dc~~~~~KLRamL~~~Ee 315 (412)
+|+.-||.+.|+|.-+|...- |...=-+||...|++||=
T Consensus 121 EARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMEl 170 (305)
T PF15290_consen 121 EARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMEL 170 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHH
Confidence 456778888888888876544 445555679999998884
No 23
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=34.33 E-value=30 Score=24.93 Aligned_cols=27 Identities=22% Similarity=0.808 Sum_probs=15.9
Q ss_pred CCCcccc-hhhHHHHHhhhhhh-heeecc
Q 015141 17 GGGSRLP-IVLVIFFSVLAPLI-FFVGRG 43 (412)
Q Consensus 17 ~~~~~~p-v~~~vfl~vlaPli-Ffv~r~ 43 (412)
+.+.+.. +++++|+-+++|.+ |++||+
T Consensus 18 ~~~~k~~W~~~i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 18 SPSSKILWLIVILFFPIIGPILYLIFGRK 46 (46)
T ss_pred CCchhhHHHHHHHHHHHHHHhheEEEeCC
Confidence 3344433 44566677888877 556653
No 24
>PRK10807 paraquat-inducible protein B; Provisional
Probab=30.79 E-value=95 Score=33.88 Aligned_cols=14 Identities=0% Similarity=0.178 Sum_probs=6.2
Q ss_pred CCchhHHHHhHHHH
Q 015141 219 DNSDSTVRLMRDQM 232 (412)
Q Consensus 219 ~~~Ds~vr~lkDQl 232 (412)
++..+.+.+|.+|+
T Consensus 409 Pt~ps~l~~l~~~~ 422 (547)
T PRK10807 409 PTVSGGLAQIQQKL 422 (547)
T ss_pred ecCCCCHHHHHHHH
Confidence 33344444444444
No 25
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=25.70 E-value=3.8e+02 Score=28.62 Aligned_cols=105 Identities=17% Similarity=0.245 Sum_probs=68.2
Q ss_pred HHhHHHHHHHHhhhhhhccCCCchhHHHH-----------HHHHHHHHHHhcccccCc-cCCCCHHHHHHHHHHHHHHhh
Q 015141 226 RLMRDQMIMARVYLSIAKMKNKPDLQQEL-----------QSRLKESQRALGDTAADA-DLHHSVPEKIKLMGQVLSKAR 293 (412)
Q Consensus 226 r~lkDQli~AKaY~~iAk~~nn~~L~~EL-----------~~~Ire~qr~L~eA~~D~-dLp~~a~~kik~M~~~L~kAK 293 (412)
.+|+.||+-++- .|+|.+|..+=..+| +.++.++++-.+|-.-.+ .|.++..+.++--..+...-+
T Consensus 109 qkL~nqL~~~~~--vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQ 186 (401)
T PF06785_consen 109 QKLKNQLFHVRE--VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQ 186 (401)
T ss_pred HHHHHHHHHHHH--HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999988 889998886544433 334445555555554444 366666665665555566666
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Q 015141 294 EQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAA 332 (412)
Q Consensus 294 ~~~yDc~~~~~KLRamL~~~Eeqv~~~kkQs~fl~qLAA 332 (412)
.-...-.+|+.|=.+-|-.+|.+|+-.+-.=.-+-|++.
T Consensus 187 atf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 187 ATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 666667777777777777777777776555555555543
No 26
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=25.15 E-value=6.7e+02 Score=25.16 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=24.5
Q ss_pred CCchhHHHHhHHHHHHHHhhhhhhccCCC
Q 015141 219 DNSDSTVRLMRDQMIMARVYLSIAKMKNK 247 (412)
Q Consensus 219 ~~~Ds~vr~lkDQli~AKaY~~iAk~~nn 247 (412)
+.++....-+++++---|-|+.-|...++
T Consensus 122 ~~S~~~~~~l~~~~~k~~~~L~~A~~sD~ 150 (342)
T cd08915 122 PSSDEAAKELYEKVTKLRGYLEQASNSDN 150 (342)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 45777888999999999999999987765
No 27
>PF14282 FlxA: FlxA-like protein
Probab=24.60 E-value=2.7e+02 Score=24.01 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=24.6
Q ss_pred chhHHHHHHHHHHHHHHhcccccCccCCCCHH
Q 015141 248 PDLQQELQSRLKESQRALGDTAADADLHHSVP 279 (412)
Q Consensus 248 ~~L~~EL~~~Ire~qr~L~eA~~D~dLp~~a~ 279 (412)
......|..+|++++.-|.+...|.+++.+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k 49 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQK 49 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHH
Confidence 66778888888888888888877777765543
No 28
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.69 E-value=1.3e+02 Score=24.58 Aligned_cols=61 Identities=16% Similarity=0.246 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhcccccCccCCCCHHHHHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHH
Q 015141 252 QELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVR 318 (412)
Q Consensus 252 ~EL~~~Ire~qr~L~eA~~D~dLp~~a~~kik~M~~~L~kAK~~~yDc~~~~~KLRamL~~~Eeqv~ 318 (412)
+.|+.-+++.++.+... ..++.+..+.+..++.++++..-|......++..+.++.++--.
T Consensus 22 ~~l~~~l~~~~~ti~~l------~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~ 82 (90)
T PF06103_consen 22 KKLKKTLDEVNKTIDTL------QEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGE 82 (90)
T ss_pred HHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444555555544443 45556677888888888888888888888888888877766443
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.58 E-value=2.1e+02 Score=30.37 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Q 015141 281 KIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAA 332 (412)
Q Consensus 281 kik~M~~~L~kAK~~~yDc~~~~~KLRamL~~~Eeqv~~~kkQs~fl~qLAA 332 (412)
.|...-..++.-|+.+-+.+.-.+||++|.+.+|+|+....++...|.---.
T Consensus 226 eme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~ 277 (365)
T KOG2391|consen 226 EMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVR 277 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444444444445555567777789999999999999998888877764433
No 30
>PRK10404 hypothetical protein; Provisional
Probab=22.48 E-value=3.3e+02 Score=23.57 Aligned_cols=79 Identities=11% Similarity=0.080 Sum_probs=52.1
Q ss_pred cCCCchhHHHHHHHHHHHHHHhcccccCccCCCCHHHHHHHHHHHHHHhhccccChHH-HHHHHHHHHHHHHHHHHHHHH
Q 015141 244 MKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKL-VTGKLRAMLQTADEQVRSLKK 322 (412)
Q Consensus 244 ~~nn~~L~~EL~~~Ire~qr~L~eA~~D~dLp~~a~~kik~M~~~L~kAK~~~yDc~~-~~~KLRamL~~~Eeqv~~~kk 322 (412)
..+..+|..||+.=+.+++.+|.++..++ ...+.+.=...+..|..+|+..-|... +..+.|.+...+++-++.+--
T Consensus 4 ~~~~~~l~~dl~~L~~dle~Ll~~~~~~a--~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw 81 (101)
T PRK10404 4 QFGDTRIDDDLTLLSETLEEVLRSSGDPA--DQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPW 81 (101)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 44567888999999999999998876543 122222233344555566644444444 345679999999999988665
Q ss_pred hh
Q 015141 323 QS 324 (412)
Q Consensus 323 Qs 324 (412)
|+
T Consensus 82 ~a 83 (101)
T PRK10404 82 QG 83 (101)
T ss_pred HH
Confidence 54
No 31
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.63 E-value=2.5e+02 Score=23.59 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhcccccCccCCCCHHHHHHHHHHHHHHhhccccChHHH--HHHHHHH
Q 015141 252 QELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLV--TGKLRAM 309 (412)
Q Consensus 252 ~EL~~~Ire~qr~L~eA~~D~dLp~~a~~kik~M~~~L~kAK~~~yDc~~~--~~KLRam 309 (412)
.+|++-|..++|+-.|- ......+..+-+.||...||.+.+ +-+||.|
T Consensus 4 ~~Lr~~ieRiErLEeEk----------~~i~~dikdVyaEAK~~GfD~K~lr~ii~lRk~ 53 (74)
T PF10073_consen 4 EQLRQFIERIERLEEEK----------KAISDDIKDVYAEAKGNGFDTKALRQIIRLRKK 53 (74)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHcC
Confidence 46777777777765554 345667888899999999999987 4556554
No 32
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=20.19 E-value=5.6e+02 Score=26.21 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=26.1
Q ss_pred ccccccCCCCchhHHHHhHHHHHHHHhhhhhhccCCC
Q 015141 211 IWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKNK 247 (412)
Q Consensus 211 iWr~e~e~~~~Ds~vr~lkDQli~AKaY~~iAk~~nn 247 (412)
-|.+. .++....-|+.++---+.|+.-|...+.
T Consensus 119 ~Wtr~----~S~~~~~~l~~~~~~~~~~L~~A~~sD~ 151 (353)
T cd09236 119 RWTRP----DSHEANPKLYTQAAEYEGYLKQAGASDE 151 (353)
T ss_pred CCCCC----CcHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 48554 6677888999999999999998877665
Done!