Query 015141
Match_columns 412
No_of_seqs 134 out of 178
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 07:24:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v1a_A Computational design, M 63.4 9.9 0.00034 28.3 4.4 39 227-265 5-43 (48)
2 1yzm_A FYVE-finger-containing 61.2 11 0.00037 28.4 4.4 39 227-265 6-44 (51)
3 1z0k_B FYVE-finger-containing 60.4 10 0.00036 30.1 4.4 40 226-265 23-62 (69)
4 1z0j_B FYVE-finger-containing 57.8 13 0.00045 28.7 4.4 40 227-266 13-52 (59)
5 2lk9_A Bone marrow stromal ant 39.2 12 0.0004 26.3 1.4 20 24-43 12-31 (35)
6 3k66_A Beta-amyloid-like prote 23.3 2.9E+02 0.01 26.4 8.4 76 237-324 4-87 (239)
7 2b5u_A Colicin E3; high resolu 21.9 5.2E+02 0.018 27.4 10.6 21 156-176 290-310 (551)
8 1dip_A Delta-sleep-inducing pe 21.3 1.1E+02 0.0038 24.7 4.3 39 305-346 19-57 (78)
9 4e61_A Protein BIM1; EB1-like 18.2 1.5E+02 0.0053 25.1 4.8 60 253-315 22-101 (106)
10 1q06_A Transcriptional regulat 12.6 5.9E+02 0.02 21.0 7.4 50 283-332 61-110 (135)
No 1
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=63.39 E-value=9.9 Score=28.33 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=35.6
Q ss_pred HhHHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHHHh
Q 015141 227 LMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRAL 265 (412)
Q Consensus 227 ~lkDQli~AKaY~~iAk~~nn~~L~~EL~~~Ire~qr~L 265 (412)
=|..|+++=+.|+.-|+..+...=+.-|..+++|+++-+
T Consensus 5 PL~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 5 PLAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999988654
No 2
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=61.20 E-value=11 Score=28.38 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=35.4
Q ss_pred HhHHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHHHh
Q 015141 227 LMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRAL 265 (412)
Q Consensus 227 ~lkDQli~AKaY~~iAk~~nn~~L~~EL~~~Ire~qr~L 265 (412)
=|.+|+++=+.|+--|+..+..+=+.-|..+++|++.-+
T Consensus 6 PL~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei 44 (51)
T 1yzm_A 6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEY 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999988654
No 3
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=60.43 E-value=10 Score=30.07 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=36.6
Q ss_pred HHhHHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHHHh
Q 015141 226 RLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRAL 265 (412)
Q Consensus 226 r~lkDQli~AKaY~~iAk~~nn~~L~~EL~~~Ire~qr~L 265 (412)
.=|.+|+++=+.|+--||..++.+=+.-|..+++|+++-+
T Consensus 23 dPL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei 62 (69)
T 1z0k_B 23 DPLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEY 62 (69)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999998755
No 4
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=57.79 E-value=13 Score=28.74 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=36.3
Q ss_pred HhHHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHHHhc
Q 015141 227 LMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALG 266 (412)
Q Consensus 227 ~lkDQli~AKaY~~iAk~~nn~~L~~EL~~~Ire~qr~L~ 266 (412)
-|..|+++-+.|+--|+..+..+=+.-|..+++|++.-+-
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~ 52 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLA 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999887543
No 5
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=39.23 E-value=12 Score=26.31 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=13.7
Q ss_pred hhhHHHHHhhhhhhheeecc
Q 015141 24 IVLVIFFSVLAPLIFFVGRG 43 (412)
Q Consensus 24 v~~~vfl~vlaPliFfv~r~ 43 (412)
+++++.+.+.+|+|+|+-|.
T Consensus 12 l~LLviV~LgV~LI~f~~kA 31 (35)
T 2lk9_A 12 LVLLIIVILGVPLIIFTIKK 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhcchheEEeeec
Confidence 45666777899999998776
No 6
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=23.29 E-value=2.9e+02 Score=26.42 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=46.9
Q ss_pred hhhhhhccCCCchhHHHHHHHHHHHHHHhcccccCccCCCCHHHHHHHHHHHHHHhhccc-cCh-------HHHHHHHHH
Q 015141 237 VYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQL-YDC-------KLVTGKLRA 308 (412)
Q Consensus 237 aY~~iAk~~nn~~L~~EL~~~Ire~qr~L~eA~~D~dLp~~a~~kik~M~~~L~kAK~~~-yDc-------~~~~~KLRa 308 (412)
+|+..+...|...-..+=+.++.+-.|-= ..+-|+.-+.+-.++++.. -|. +.++.++..
T Consensus 4 ~Yf~~~~~~~EH~~f~~Ak~rLe~~hr~k------------m~kVMkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~ 71 (239)
T 3k66_A 4 PYFKIANWTNEHDDFKKAEMRMDEKHRKK------------VDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQK 71 (239)
T ss_dssp GGGGCSCCTTHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCchhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 57777766665555555555555433210 1233455555555555433 242 688999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 015141 309 MLQTADEQVRSLKKQS 324 (412)
Q Consensus 309 mL~~~Eeqv~~~kkQs 324 (412)
++.++|++....++|-
T Consensus 72 ~v~sLEqE~a~ErqqL 87 (239)
T 3k66_A 72 TVSSLEEEHKRMRKEI 87 (239)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHH
Confidence 9999999998877653
No 7
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=21.93 E-value=5.2e+02 Score=27.42 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 015141 156 VDTPAKQFRRQLRERRREKRA 176 (412)
Q Consensus 156 ~~~p~~~~~~~~r~~~~~~r~ 176 (412)
..+|..+++|+..|+||++-.
T Consensus 290 ilt~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 290 VLSPDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHh
Confidence 567999999999999987643
No 8
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=21.28 E-value=1.1e+02 Score=24.74 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhhhccCCCccccccchh
Q 015141 305 KLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRL 346 (412)
Q Consensus 305 KLRamL~~~Eeqv~~~kkQs~fl~qLAAktiPKsLHCLsmRL 346 (412)
-||..|.-++++.........+|.++|+ |..|--|..||
T Consensus 19 vLKe~I~EL~e~~~qLE~EN~~Lk~~as---pEql~q~q~~l 57 (78)
T 1dip_A 19 ILKEQIRELVEKNSQLERENTLLKTLAS---PEQLEKFQSRL 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS---SSCSCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHhcc
Confidence 4899999999999999999999999998 88888888888
No 9
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=18.24 E-value=1.5e+02 Score=25.10 Aligned_cols=60 Identities=10% Similarity=0.213 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcccccCccCCCCHHHHHHHHHHHHHHhhcc----cc----------------ChHHHHHHHHHHHHH
Q 015141 253 ELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQ----LY----------------DCKLVTGKLRAMLQT 312 (412)
Q Consensus 253 EL~~~Ire~qr~L~eA~~D~dLp~~a~~kik~M~~~L~kAK~~----~y----------------Dc~~~~~KLRamL~~ 312 (412)
+|.++|.++...+.......| .-..|+|..+.++-.+.+. -| +-..+++|+.++|.+
T Consensus 22 ~L~~ei~eLk~~ve~lEkERD---FYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~ILYa 98 (106)
T 4e61_A 22 SLNEEIEQYKGTVSTLEIERE---FYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESILYA 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHHHhc
Confidence 555555555544444322221 3456888888888777652 11 234678999999999
Q ss_pred HHH
Q 015141 313 ADE 315 (412)
Q Consensus 313 ~Ee 315 (412)
|||
T Consensus 99 Tee 101 (106)
T 4e61_A 99 TAE 101 (106)
T ss_dssp HHH
T ss_pred ccc
Confidence 987
No 10
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=12.64 E-value=5.9e+02 Score=21.02 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Q 015141 283 KLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAA 332 (412)
Q Consensus 283 k~M~~~L~kAK~~~yDc~~~~~KLRamL~~~Eeqv~~~kkQs~fl~qLAA 332 (412)
+.+..++....+...+|..+..-|.+.+..+|+++......-..+.++..
T Consensus 61 ~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T 1q06_A 61 EESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333334567777788888888889888888888888877765
Done!