Query 015141
Match_columns 412
No_of_seqs 134 out of 178
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 07:24:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015141.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015141hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yzma1 a.2.19.1 (A:456-501) F 29.7 35 0.0025 23.6 4.4 39 228-266 4-42 (46)
2 d1z0jb1 a.2.19.1 (B:734-784) F 27.5 37 0.0027 23.5 4.2 42 227-268 5-46 (51)
3 d1xrda1 f.3.1.1 (A:1-52) Light 21.4 15 0.0011 26.1 1.1 23 21-43 12-34 (52)
4 d2gyqa1 a.25.1.4 (A:1-160) Hyp 16.7 1.7E+02 0.012 23.8 7.1 60 281-350 29-89 (160)
5 d1n08a_ b.43.5.1 (A:) Riboflav 10.1 1.1E+02 0.0077 25.0 3.7 38 212-249 112-152 (154)
6 d2f23a1 a.2.1.1 (A:3-77) GreA 9.8 1.7E+02 0.012 21.2 4.4 25 254-278 20-44 (75)
7 d1q08a_ a.6.1.3 (A:) Transcrip 8.7 3.4E+02 0.025 19.5 7.9 52 282-333 19-71 (94)
8 d1rw6a_ a.47.4.1 (A:) CAPPD, a 8.6 5.2E+02 0.038 21.6 8.2 25 298-322 54-78 (192)
9 d2qzga1 a.29.14.1 (A:4-91) Unc 8.0 1.8E+02 0.013 22.1 3.9 34 256-289 8-41 (88)
10 d1grja1 a.2.1.1 (A:2-79) GreA 7.8 1.7E+02 0.012 21.4 3.7 37 257-293 24-72 (78)
No 1
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.70 E-value=35 Score=23.56 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=35.4
Q ss_pred hHHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHHHhc
Q 015141 228 MRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALG 266 (412)
Q Consensus 228 lkDQli~AKaY~~iAk~~nn~~L~~EL~~~Ire~qr~L~ 266 (412)
|-+||-.-|+|+-=||..+..+=+.-|..++||+|+.+.
T Consensus 4 llqQi~~ik~yI~QAk~a~R~dEV~~Le~NLreLq~e~~ 42 (46)
T d1yzma1 4 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYD 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999998654
No 2
>d1z0jb1 a.2.19.1 (B:734-784) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.47 E-value=37 Score=23.50 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=37.0
Q ss_pred HhHHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHHHhccc
Q 015141 227 LMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDT 268 (412)
Q Consensus 227 ~lkDQli~AKaY~~iAk~~nn~~L~~EL~~~Ire~qr~L~eA 268 (412)
+|-.||---|||.-=||..+..+=+.-|..++||+++.|.+-
T Consensus 5 lllqqidnikayifdak~~gr~deve~ltenl~elk~tl~kq 46 (51)
T d1z0jb1 5 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQ 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHhcCchhHHHHHHHHHHHHHHHHHHh
Confidence 456788888999999999999999999999999999988653
No 3
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=21.40 E-value=15 Score=26.08 Aligned_cols=23 Identities=35% Similarity=0.389 Sum_probs=18.2
Q ss_pred ccchhhHHHHHhhhhhhheeecc
Q 015141 21 RLPIVLVIFFSVLAPLIFFVGRG 43 (412)
Q Consensus 21 ~~pv~~~vfl~vlaPliFfv~r~ 43 (412)
|.=|++.+||++||-+|.|+==+
T Consensus 12 r~lva~~~fL~~LAl~IHfiLLS 34 (52)
T d1xrda1 12 QALVGLATFLFVLALLIHFILLS 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34577889999999999887433
No 4
>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=16.67 E-value=1.7e+02 Score=23.77 Aligned_cols=60 Identities=20% Similarity=0.427 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccCCCccccccch-hhHHh
Q 015141 281 KIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMR-LTIEY 350 (412)
Q Consensus 281 kik~M~~~L~kAK~~~yDc~~~~~KLRamL~~~Eeqv~~~kkQs~fl~qLAAktiPKsLHCLsmR-LT~EY 350 (412)
..+.|..+..+|. + ..+-..|...+..+++|+..... .+..+.. =|.+.+|.+|+ |..|-
T Consensus 29 ~~~al~~m~~~a~----~-peLk~~l~~H~~eT~~qi~rLe~---i~~~lg~--~p~~~~c~am~gli~e~ 89 (160)
T d2gyqa1 29 ITKALPKMIEQAT----N-RDLSQGLTSHLEETQKQIERLDQ---VFKKLGQ--KPSGVNCPAIDGLIKEA 89 (160)
T ss_dssp HHHHHHHHHHHCC----S-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHTC--CSCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC----C-HHHHHHHHHHHHHHHHHHHHHHH---HHHHcCC--CCCCCccHHHHHHHHHH
Confidence 3445555554442 3 77888899999999999877653 4455543 38999999998 77776
No 5
>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=10.11 E-value=1.1e+02 Score=25.03 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=30.9
Q ss_pred cccccCCCCchhHHHHhHHHHHHHHhhh---hhhccCCCch
Q 015141 212 WRKENENDNSDSTVRLMRDQMIMARVYL---SIAKMKNKPD 249 (412)
Q Consensus 212 Wr~e~e~~~~Ds~vr~lkDQli~AKaY~---~iAk~~nn~~ 249 (412)
=|.|.+-.+.|+++.||+.-+..||.|+ ..+..++++.
T Consensus 112 iR~e~kF~s~e~L~~qI~~D~~~ar~~L~~~~~~~~~~~~~ 152 (154)
T d1n08a_ 112 IRPELNYAGLDKLIEDIHTDIRVALNSMDRPSYSSYKKDPF 152 (154)
T ss_dssp EECCCCCCCHHHHHHHHHHHHHHHHHHHTSHHHHGGGGCGG
T ss_pred ccCCcccCCHHHHHHHHHHHHHHHHHHHcChhHHhhccCcc
Confidence 5778888999999999999999999994 4666655544
No 6
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=9.81 E-value=1.7e+02 Score=21.20 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcccccCccCCCCH
Q 015141 254 LQSRLKESQRALGDTAADADLHHSV 278 (412)
Q Consensus 254 L~~~Ire~qr~L~eA~~D~dLp~~a 278 (412)
|+.+..+.-..+++|...+||..++
T Consensus 20 l~~~r~ei~~~I~eAr~~GDl~ENa 44 (75)
T d2f23a1 20 ERERLQEATKILQELMESSDDYDDS 44 (75)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCSCSH
T ss_pred HHhhHHHHHHHHHHHHHhCccccch
Confidence 4566667777888999999999886
No 7
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=8.65 E-value=3.4e+02 Score=19.46 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=39.3
Q ss_pred HHHHHHHHHHh-hccccChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhc
Q 015141 282 IKLMGQVLSKA-REQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAK 333 (412)
Q Consensus 282 ik~M~~~L~kA-K~~~yDc~~~~~KLRamL~~~Eeqv~~~kkQs~fl~qLAAk 333 (412)
+..+..+|.-. .....+|..+...+...+..+|+++...+.-...|.+++..
T Consensus 19 L~EI~~ll~l~~~~~~~~c~~v~~l~~~kl~~i~~kI~~L~~l~~~L~~l~~~ 71 (94)
T d1q08a_ 19 LESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (94)
T ss_dssp HHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555432 22456798888888999999999999999999999988775
No 8
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.62 E-value=5.2e+02 Score=21.63 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 015141 298 DCKLVTGKLRAMLQTADEQVRSLKK 322 (412)
Q Consensus 298 Dc~~~~~KLRamL~~~Eeqv~~~kk 322 (412)
|.+.++.++..++.++|++..+.++
T Consensus 54 d~K~~~~rFq~~v~~LE~e~~~erq 78 (192)
T d1rw6a_ 54 DKKAVIQHFQEKVESLEQEAANERQ 78 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhhhhHHHHh
Confidence 5578999999999999999888776
No 9
>d2qzga1 a.29.14.1 (A:4-91) Uncharacterized protein MMP1188 {Methanococcus maripaludis [TaxId: 39152]}
Probab=8.01 E-value=1.8e+02 Score=22.06 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcccccCccCCCCHHHHHHHHHHHH
Q 015141 256 SRLKESQRALGDTAADADLHHSVPEKIKLMGQVL 289 (412)
Q Consensus 256 ~~Ire~qr~L~eA~~D~dLp~~a~~kik~M~~~L 289 (412)
.+|+++..+|.....|..+|+..+..+..+...|
T Consensus 8 e~i~~~~~~L~qI~~D~sVPRNIRr~a~~~~~~L 41 (88)
T d2qzga1 8 DKLKNISSMLEEIVEDTTVPRNIRAAADNAKNAL 41 (88)
T ss_dssp HHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 4788888899998899999999887776665544
No 10
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.81 E-value=1.7e+02 Score=21.36 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=24.8
Q ss_pred HHHHHHHHhcccccCccCCCCHH------------HHHHHHHHHHHHhh
Q 015141 257 RLKESQRALGDTAADADLHHSVP------------EKIKLMGQVLSKAR 293 (412)
Q Consensus 257 ~Ire~qr~L~eA~~D~dLp~~a~------------~kik~M~~~L~kAK 293 (412)
..-+.-..+++|...+||..++. .+|..++..|..|+
T Consensus 24 ~rpei~~~I~~Ar~~GDlsENaeY~aAKe~q~~~e~RI~eLe~~L~~a~ 72 (78)
T d1grja1 24 RRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQ 72 (78)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred cHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhCce
Confidence 44567778888888999988762 24555555555553
Done!