Query 015142
Match_columns 412
No_of_seqs 126 out of 1054
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02754 chorismate synthase 100.0 1E-141 3E-146 1071.0 36.7 369 29-397 1-381 (413)
2 COG0082 AroC Chorismate syntha 100.0 8E-140 2E-144 1040.1 34.2 336 53-397 1-351 (369)
3 PF01264 Chorismate_synt: Chor 100.0 1E-135 3E-140 1012.5 23.5 333 61-397 1-346 (346)
4 TIGR00033 aroC chorismate synt 100.0 2E-132 5E-137 991.0 35.4 334 61-397 1-346 (351)
5 cd07304 Chorismate_synthase Ch 100.0 5E-132 1E-136 987.1 34.0 330 61-393 1-343 (344)
6 PRK05382 chorismate synthase; 100.0 2E-130 5E-135 979.2 33.7 330 59-397 1-344 (359)
7 PRK12463 chorismate synthase; 100.0 1E-129 2E-134 982.0 34.6 338 61-400 1-370 (390)
8 KOG4492 Chorismate synthase [A 100.0 1E-100 3E-105 739.1 20.8 351 55-405 2-364 (368)
9 KOG4492 Chorismate synthase [A 99.1 3.3E-12 7.1E-17 125.5 -4.9 155 228-383 191-352 (368)
10 cd07304 Chorismate_synthase Ch 83.9 1.9 4.2E-05 44.6 5.5 76 61-137 191-292 (344)
11 PF01264 Chorismate_synt: Chor 79.3 0.72 1.6E-05 47.7 0.6 75 63-138 191-291 (346)
12 PLN02754 chorismate synthase 77.7 4.4 9.5E-05 43.0 5.7 77 60-138 223-327 (413)
13 COG0082 AroC Chorismate syntha 72.0 7 0.00015 40.9 5.4 74 64-139 198-297 (369)
14 PRK12463 chorismate synthase; 68.5 11 0.00025 39.7 6.1 73 256-355 5-78 (390)
15 PRK05382 chorismate synthase; 67.5 14 0.00031 38.6 6.5 72 257-355 8-80 (359)
16 PF08712 Nfu_N: Scaffold prote 67.1 3.9 8.5E-05 34.1 2.0 30 285-314 36-65 (87)
17 TIGR00033 aroC chorismate synt 60.1 20 0.00042 37.5 5.9 74 257-357 6-80 (351)
18 PLN02948 phosphoribosylaminoim 41.2 52 0.0011 36.1 5.8 65 244-311 451-532 (577)
19 PF00220 Hormone_4: Neurohypop 34.4 15 0.00032 19.4 0.2 9 267-275 1-9 (9)
20 TIGR01162 purE phosphoribosyla 33.4 1.3E+02 0.0027 28.2 6.2 86 192-310 17-119 (156)
21 TIGR02725 phenyl_P_gamma pheny 30.5 46 0.00099 27.5 2.5 45 262-306 17-61 (84)
22 PRK00587 hypothetical protein; 24.2 56 0.0012 28.3 2.1 28 243-271 16-43 (99)
23 PF04008 Adenosine_kin: Adenos 23.2 78 0.0017 29.7 2.9 44 58-103 107-153 (155)
24 COG0250 NusG Transcription ant 20.6 2.5E+02 0.0053 26.6 5.7 54 72-125 83-139 (178)
No 1
>PLN02754 chorismate synthase
Probab=100.00 E-value=1.4e-141 Score=1070.98 Aligned_cols=369 Identities=82% Similarity=1.240 Sum_probs=346.5
Q ss_pred ccCCCCceeeeeccCCcchhhcccccccccCceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhhCCCCCCCCC
Q 015142 29 RQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITT 108 (412)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~m~ntfG~~frvttfGESHG~aiG~VIDG~PaGl~i~~ediq~~L~RRrpG~~~~tT 108 (412)
|.+++.+++++++.+.+++|+++|++|+||++||+||||||||++||||||||||||+||+||||++|+||||||++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ntfG~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~~L~RRrpG~~~~~t 80 (413)
T PLN02754 1 RRLSSASVQISLRSRTRKNLQIQAAGSTFGTYFRVTTFGESHGGGVGCVIDGCPPRIPLTEEDMQFDLDRRRPGQSRITT 80 (413)
T ss_pred CCccccccceecccccccceeeecccCccccceEEEEEecCCCCeeEEEEcccCCCCEeCHHHHHHHHhccCCCCCCCCc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEccccCCeeccCcEEEEEecCCCCCCCccccccCCCCCccccccccccCCccCCCCchhhHHHHHHHHHH
Q 015142 109 PRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAP 188 (412)
Q Consensus 109 ~R~E~D~v~ilSGv~~G~TtGtPIa~~I~N~D~~s~DY~~l~~~pRPGHAD~t~~~KYg~~D~rGGGRsSaReTa~rVaA 188 (412)
||+|.|+|+||||||+|+|||+||+++|+|+||+||||+++++.||||||||+|++|||++|+||||||||||||+||||
T Consensus 81 ~R~E~D~veIlSGv~~G~TtGtPIa~~I~N~D~~s~dY~~~~~~pRPGHAD~t~~~KYg~rd~rGGgRsSaReTa~rVaA 160 (413)
T PLN02754 81 PRKETDTCEILSGVSEGMTLGTPIAVFVPNTDQRGQDYSEMSVAYRPSHADATYDFKYGVRAVQGGGRSSARETIGRVAA 160 (413)
T ss_pred CCCCCCceEEeecccCCCcCCCCeEEEEEcCCCCCCChHHhcCCCCCCCcchhHHHhcCCcccCCccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEEEEEeeceecCCCCCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEE
Q 015142 189 GAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCI 268 (412)
Q Consensus 189 GaIAk~~L~~~~GI~I~s~v~~IG~i~~~~~~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ar~~GDSlGGvve~v 268 (412)
||||||||++.+||+|.|||++||+|+.+++..+....+++++++++++|||++++++|+++|++||++||||||+|||+
T Consensus 161 GaiAk~lL~~~~GI~I~s~v~~IG~i~~~~~~~~~~~~~~~~~~~~~~rc~d~~~~~~m~~~I~~ak~~GDSlGGivev~ 240 (413)
T PLN02754 161 GAVAKKILKQFAGTEILAYVSQVHDVVLPEDLVDHETLTLEQIESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCI 240 (413)
T ss_pred HHHHHHHHHhhCCeEEEEEEEEEcCEecccccCCcchhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 99999999764699999999999999753211121222367899999999999999999999999999999999999999
Q ss_pred EeecCCCCCCccccchHHHHHHHhcCCCcccEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCCc
Q 015142 269 VRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEI 348 (412)
Q Consensus 269 ~~gvP~GLG~PvFdkLea~LA~almSIpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~p 348 (412)
++|||+|||||+|||||++||+||||||||||||||.||+.+.|+|||+||+|+++++|+++|+|||+|||+||||||||
T Consensus 241 ~~gvP~GLG~pvfdkLda~LA~Al~SIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~~~~~TN~aGGI~GGISnG~p 320 (413)
T PLN02754 241 VRNVPRGLGSPVFDKLEAELAKAMMSLPATKGFEIGSGFAGTLLTGSEHNDEFYMDEHGRIRTRTNRSGGIQGGISNGEI 320 (413)
T ss_pred EECCCCCCCccccccchHHHHHHhcCcCceeEEEEccchhhhhccccccCcceeecCCCceEecccCCCcccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999987778899999999999999999999
Q ss_pred eEEEEEEccCCcccccccceeccCCc------ccccCchh----hHH--HHHHHHHHHHhh
Q 015142 349 INMRIAFKPTSTIGVSLISLPLSIKT------NSHVGTTL----PIV--MYSLCFILLLWI 397 (412)
Q Consensus 349 Iv~rva~KPtpSI~k~q~TVdl~t~~------~~~~p~~~----pvV--~~~l~~~~~~~~ 397 (412)
|+||++|||||||.+||+|||+++++ ++||||++ ||| |+||+++|.+++
T Consensus 321 Iv~rva~KPtpSI~k~q~TVd~~~~e~~~~~~gRhDpCivprA~pV~EAm~AlvLaD~~L~ 381 (413)
T PLN02754 321 IVMRIAFKPTSTIGKKQNTVTRDGQETELRARGRHDPCVVPRAVPMVEAMVALVLVDQLMA 381 (413)
T ss_pred EEEEEEeCCCcccccccccccCCCCEeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988765 56776666 566 889999987765
No 2
>COG0082 AroC Chorismate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-140 Score=1040.05 Aligned_cols=336 Identities=52% Similarity=0.819 Sum_probs=322.2
Q ss_pred ccccccCceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeeccCcE
Q 015142 53 AGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 132 (412)
Q Consensus 53 m~ntfG~~frvttfGESHG~aiG~VIDG~PaGl~i~~ediq~~L~RRrpG~~~~tT~R~E~D~v~ilSGv~~G~TtGtPI 132 (412)
|+||||++||+||||||||++||||||||||||+|++||||.||+||||||++++|||+|+|+|+||||||+|+||||||
T Consensus 1 ~~nt~G~~fr~tT~GESHG~alg~VIdG~PaGl~l~~edIq~eL~RRrpG~~r~~t~R~E~D~veIlSGv~~G~TtGtPI 80 (369)
T COG0082 1 MGNTFGRLFRVTTFGESHGPALGAVIDGCPAGLELSEEDIQKELDRRRPGYSRGTTMRKEKDEVEILSGVFEGKTTGTPI 80 (369)
T ss_pred CCCcccceEEEEeecccCCCeeEEEEeccCCCCccCHHHHHHHHHhcCCCCCCCcccccCCcceEEeeeeecCccCCCce
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCccccccCCCCCccccccccccCCccCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEee
Q 015142 133 HVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAH 212 (412)
Q Consensus 133 a~~I~N~D~~s~DY~~l~~~pRPGHAD~t~~~KYg~~D~rGGGRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG 212 (412)
+++|+|+||+||||+++++.||||||||||++|||++||||||||||||||+||||||||||||++ +||+|.+||++||
T Consensus 81 ~l~I~N~d~~s~~y~~~~~~pRPGHADyty~~KYg~rD~RgggRsSaReTa~rVAaGAvAKk~L~~-~gi~v~~~v~~iG 159 (369)
T COG0082 81 ALLIENTDQRSKDYSMIKDPPRPGHADYTYGIKYGFRDYRGGGRSSARETAARVAAGAVAKKLLRE-LGIEVLGHVVSIG 159 (369)
T ss_pred EEEEEcCCCCccchhhcccCCCCCcccchhhhhcCccccCCcccchhHHHHHHHHHHHHHHHHHHh-CCeEEEEeeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred ceecCCCCCCcccccHHhhhc--CCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeecCCCCCCccccchHHHHHH
Q 015142 213 NVVLPEDVVDHEMLTLDQVES--NIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAK 290 (412)
Q Consensus 213 ~i~~~~~~~~~~~~~~~~i~~--~~v~c~d~~~~~~m~~~I~~ar~~GDSlGGvve~v~~gvP~GLG~PvFdkLea~LA~ 290 (412)
.++.+.. .+|+++++ |+++|||++++++|+++|+++|++||||||+|||++.|||+|||+|+||||||+||+
T Consensus 160 ~~~~~~~------~~~~~~~~~~sp~~~pd~e~~~~m~~~i~~~k~~GDSiGgvvevva~gvP~GLG~pvfdkLda~lA~ 233 (369)
T COG0082 160 GIEADDS------LDFEEVEQRASPVRCPDPEAEEEMEELIDKAKKEGDSIGGVVEVVAEGVPAGLGEPVFDKLDAKLAH 233 (369)
T ss_pred CCccccc------CCHHHHhhccCCccCCCHHHHHHHHHHHHHHHhcCCCcccEEEEEEeCCCCCCCCcccccchHHHHH
Confidence 9987531 55777777 899999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcccEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCCceEEEEEEccCCcccccccceec
Q 015142 291 AMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVSLISLPL 370 (412)
Q Consensus 291 almSIpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVdl 370 (412)
||||||||||||||.||++++|+|||+||+|++++ +++++|||+|||+|||||||||++|++|||||||.+||+|||+
T Consensus 234 AlmsI~AvKGVEiG~GF~~a~~~GSe~~De~~~~~--~~~~~tN~~GGilGGitnG~pIv~r~a~KPt~SI~kp~~TVd~ 311 (369)
T COG0082 234 ALMSIPAVKGVEIGDGFEAARMRGSEANDEITLDG--GIVRKTNNAGGILGGITNGEPIVVRVAFKPTPSIYKPQRTVDL 311 (369)
T ss_pred HhhCCccceeEEeccchhhhhcccccccCceeeCC--CeeEccccCCceeccccCCccEEEEEEeCCCCccCccccceEc
Confidence 99999999999999999999999999999999865 7999999999999999999999999999999999999999999
Q ss_pred cCCc-------ccccCchh----hHH--HHHHHHHHHHhh
Q 015142 371 SIKT-------NSHVGTTL----PIV--MYSLCFILLLWI 397 (412)
Q Consensus 371 ~t~~-------~~~~p~~~----pvV--~~~l~~~~~~~~ 397 (412)
+|+| ++||||++ ||| |+||+++|.+++
T Consensus 312 ~t~e~~~~~~kgRhDpcv~prAvpV~EamvA~vLaD~~L~ 351 (369)
T COG0082 312 ETGEEVEASTKGRHDPCVVPRAVPVVEAMVALVLADHLLR 351 (369)
T ss_pred ccCCeeEEEecCcCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 9886 45666665 677 999999998888
No 3
>PF01264 Chorismate_synt: Chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows a high degree of sequence conservation [, ]. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 4ECD_B 1Q1L_D 1QXO_A 1UMF_B 1UM0_D 1SQ1_A 2O12_A 2O11_A 1ZTB_A 2QHF_A ....
Probab=100.00 E-value=1.4e-135 Score=1012.45 Aligned_cols=333 Identities=50% Similarity=0.792 Sum_probs=297.8
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeeccCcEEEEEecCC
Q 015142 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTD 140 (412)
Q Consensus 61 frvttfGESHG~aiG~VIDG~PaGl~i~~ediq~~L~RRrpG~~~~tT~R~E~D~v~ilSGv~~G~TtGtPIa~~I~N~D 140 (412)
||+||||||||++||||||||||||+||+|+||++|+||||||++++|||+|+|+++||||||+|+|||+||+++|+|+|
T Consensus 1 ~r~ttfGESHG~aig~vIdG~PaGl~i~~e~i~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~g~TtG~PI~~~I~N~d 80 (346)
T PF01264_consen 1 FRVTTFGESHGPAIGVVIDGCPAGLPIDEEDIQKELDRRRPGYGRGTTMRKEKDEVEILSGVFEGKTTGAPIAMIIRNKD 80 (346)
T ss_dssp SEEEEEESTTSSEEEEEEES--BTEB--HHHHHHHHHHHTCSTTCCCCHHHCSCEEEEEESEETTEEESS-EEEEEE-TT
T ss_pred CeEeeeecCCCCeeEEEEcCCCCCCccCHHHHHHHHHhcCCCCCCCCCCCCCCCeEEEEeceECCEeCCCCeEEEEECCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCCccccccccccCCccCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeeceecCCCC
Q 015142 141 QRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDV 220 (412)
Q Consensus 141 ~~s~DY~~l~~~pRPGHAD~t~~~KYg~~D~rGGGRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG~i~~~~~~ 220 (412)
|+||||+++++.||||||||+|++|||++|+||||||||||||+||||||||||+|++ +||+|.|||++||+|+++.
T Consensus 81 ~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~Rgggr~SaReTa~rvaaGaiAk~~L~~-~gI~i~s~v~~IG~i~~~~-- 157 (346)
T PF01264_consen 81 QRSWDYEELKDIPRPGHADYTGFLKYGFRDYRGGGRSSARETAPRVAAGAIAKQLLEE-LGIEIRSHVSSIGGIEDRE-- 157 (346)
T ss_dssp CHHCTTCTSTSSE-TTSSHHHHHHHHT-SSTHHHHHHSGGHHHHHHHHHHHHHHHHHC-TTEEEEEEEEEETTEEECC--
T ss_pred CCCcchhhhhhcCCCCcccccceeccCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-CCeEEEEEhheeCCEeccc--
Confidence 9999999999999999999999999999999999999999999999999999999997 6999999999999999863
Q ss_pred CCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeecCCCCCCccccchHHHHHHHhcCCCcccE
Q 015142 221 VDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKG 300 (412)
Q Consensus 221 ~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ar~~GDSlGGvve~v~~gvP~GLG~PvFdkLea~LA~almSIpAvKG 300 (412)
.......++++++++++|||++++++|+++|++||++||||||+|||+|+|||+|||+|+|||||++||+||||||||||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~fdkLda~la~al~sIpAvKg 237 (346)
T PF01264_consen 158 DDPSEEDFEKIEESPVRCPDPEAEEEMKELIDEAKKEGDSLGGIVEVVATGVPAGLGSPVFDKLDARLAQALMSIPAVKG 237 (346)
T ss_dssp HHHHHHHHHHHHHSTTSBSSHHHHHHHHHHHHHHHHTTGGB-EEEEEEEES--TT-SBSSCCSHHHHHHHHHHTSTTEEE
T ss_pred ccchhhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCCCCCCcCcHHHHHHHHhhCCCCeee
Confidence 22234557889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCCceEEEEEEccCCcccccccceeccCCc------
Q 015142 301 FEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVSLISLPLSIKT------ 374 (412)
Q Consensus 301 vEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVdl~t~~------ 374 (412)
||||+||+.++|+|||+||+|++++ ++++++|||+|||+|||||||||+||++|||||||.+||+|||++++|
T Consensus 238 vEfG~Gf~~a~~~GSe~nD~~~~~~-~~~~~~tN~aGGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVdl~~~e~~~~~i 316 (346)
T PF01264_consen 238 VEFGDGFEAASMRGSEVNDEIYYDD-GKIKRKTNNAGGILGGISNGMPIVFRVAFKPTPSIAKPQKTVDLKTGEEATLEI 316 (346)
T ss_dssp EEETTGGGGGGSBHHHHS-SEEECT-TTEEESS-TTTTEETTEEBSS-EEEEEEE--SS--SSCEEEEBTTTSSEEEEC-
T ss_pred EEecCcHHHhhcchhhcccceeccc-ccccccCCCcccccccccCCceEEEEEEecccccccccccccccCCCCEEEEec
Confidence 9999999999999999999999976 689999999999999999999999999999999999999999999986
Q ss_pred -ccccCchhh----HH--HHHHHHHHHHhh
Q 015142 375 -NSHVGTTLP----IV--MYSLCFILLLWI 397 (412)
Q Consensus 375 -~~~~p~~~p----vV--~~~l~~~~~~~~ 397 (412)
++||||++| || |+||+++|++++
T Consensus 317 ~gRhDpcivpra~~V~Eam~Alvlad~~Le 346 (346)
T PF01264_consen 317 KGRHDPCIVPRAVPVVEAMVALVLADALLE 346 (346)
T ss_dssp -SSS-SCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccchHHHHHHHHHHHHHHHhhC
Confidence 457888774 55 889999988764
No 4
>TIGR00033 aroC chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation.
Probab=100.00 E-value=2.3e-132 Score=990.98 Aligned_cols=334 Identities=54% Similarity=0.863 Sum_probs=314.5
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeeccCcEEEEEecCC
Q 015142 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTD 140 (412)
Q Consensus 61 frvttfGESHG~aiG~VIDG~PaGl~i~~ediq~~L~RRrpG~~~~tT~R~E~D~v~ilSGv~~G~TtGtPIa~~I~N~D 140 (412)
||+||||||||++||||||||||||+|++||||++|+||||||++++|||+|+|+|+||||||+|+|||+||+++|+|+|
T Consensus 1 ~r~ttfGESHG~aig~vIdG~PaGl~l~~e~i~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~g~TtGtPI~~~I~N~d 80 (351)
T TIGR00033 1 FRVTTFGESHGKAVGAIIDGCPAGLPLTEEDIQPDLDRRRPGYSRGTRMRKENDEVEILSGVFEGKTTGAPIALMIRNKD 80 (351)
T ss_pred CeEEEeecCCCCeeEEEEccCCCCCEeCHHHHHHHHHccCCCCCCCCCCCCCCCceEEeecccCCCcCCCCEEEEEEcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCCccccccccccCCccCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeeceecCCCC
Q 015142 141 QRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDV 220 (412)
Q Consensus 141 ~~s~DY~~l~~~pRPGHAD~t~~~KYg~~D~rGGGRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG~i~~~~~~ 220 (412)
++|+||+++++.||||||||||++|||++|+||||||||||||+||||||||||||++.+||+|.|||++||+|+.+..
T Consensus 81 ~~s~dy~~~~~~pRPGHAD~t~~~KYg~~D~rgggr~SaReTa~rVaaGaiAk~~L~~~~gI~i~s~v~~IG~i~~~~~- 159 (351)
T TIGR00033 81 VRSSDYSDIRTFPRPGHADYTYWLKYGIDDYRGGGRSSARETAARVAAGAVAKKLLAETSGIEIVAYVTQIGEVEIPRV- 159 (351)
T ss_pred CCcccchhccCCCCCCCcchhhHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEEEEECCEecCcc-
Confidence 9999999999999999999999999999999999999999999999999999999987469999999999999975321
Q ss_pred CCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeecCCCCCCccccchHHHHHHHhcCCCcccE
Q 015142 221 VDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKG 300 (412)
Q Consensus 221 ~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ar~~GDSlGGvve~v~~gvP~GLG~PvFdkLea~LA~almSIpAvKG 300 (412)
......++++++++++|||++++++|+++|++||++||||||+|||+++|||+|||+|+|||||++||+||||||||||
T Consensus 160 -~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~a~~~gDSlGG~ve~~~~gvP~GLG~p~f~kLda~La~a~msIpAvKg 238 (351)
T TIGR00033 160 -YYDPEEKERVDSSPVRCPDPEAEKEMVAEIDKAKKDGDSIGGVVECVARNVPVGLGEPLFDKLDARLAHAMMSIPAVKG 238 (351)
T ss_pred -ccchhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCCCCCCccccchHHHHHHhcCcCceeE
Confidence 1112236789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCCceEEEEEEccCCcccccccceeccCCc------
Q 015142 301 FEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVSLISLPLSIKT------ 374 (412)
Q Consensus 301 vEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVdl~t~~------ 374 (412)
||||.||+.+.|+|||+||+|++++ ++++|+|||+|||+|||||||||+||++|||||||.+||+|||+++++
T Consensus 239 vE~G~Gf~~a~~~GSe~nD~~~~~~-~~~~~~tN~~GGI~GGISnG~pIv~r~a~KP~pSI~~~q~TVd~~~~e~~~~~~ 317 (351)
T TIGR00033 239 VEIGDGFELASMRGSEANDEFVFED-GGIRRKTNNSGGILGGITNGEPIRVRIAFKPTPTIGKPQKTVDLDTEEPALATK 317 (351)
T ss_pred EEECcchhhccccccccccceEeCC-CceEecCcCcccccccccCCCcEEEEEEeCCCcccccccccccCCCCEeeeecC
Confidence 9999999999999999999999865 789999999999999999999999999999999999999999988765
Q ss_pred ccccCchh----hHH--HHHHHHHHHHhh
Q 015142 375 NSHVGTTL----PIV--MYSLCFILLLWI 397 (412)
Q Consensus 375 ~~~~p~~~----pvV--~~~l~~~~~~~~ 397 (412)
++||||++ ||| |+||+++|++++
T Consensus 318 gRhDpCivpra~~V~Eam~AlvLad~~l~ 346 (351)
T TIGR00033 318 GRHDPCVVPRAVPVVEAMTALVLADALLE 346 (351)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHHHHH
Confidence 56766666 566 999999998765
No 5
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun
Probab=100.00 E-value=4.7e-132 Score=987.12 Aligned_cols=330 Identities=54% Similarity=0.823 Sum_probs=309.6
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeeccCcEEEEEecCC
Q 015142 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTD 140 (412)
Q Consensus 61 frvttfGESHG~aiG~VIDG~PaGl~i~~ediq~~L~RRrpG~~~~tT~R~E~D~v~ilSGv~~G~TtGtPIa~~I~N~D 140 (412)
||++|||||||++|||||||||||++||+|+||++|+||||||++++|||+|+|+|+|||||++|+|||+||+++|+|+|
T Consensus 1 ~r~ttfGESHG~~ig~vIdG~PaGl~i~~e~i~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~g~TtGtPI~~~I~N~d 80 (344)
T cd07304 1 FRVTTFGESHGPALGVVIDGCPAGLPLDEEDIQKELDRRRPGQGRGTTPRIEKDEVEILSGVFEGKTTGTPIALLIRNKD 80 (344)
T ss_pred CeEEEeecCCCCeeEEEEccCCCCCEeCHHHHHHHHHccCCCCCCCCCCCCCCCceEEeecccCCCcCCCCEEEEEEcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCCccccccccccCC-ccCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeeceecCCC
Q 015142 141 QRGHDYSEMSVAYRPSHADATYDMKYGV-RSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPED 219 (412)
Q Consensus 141 ~~s~DY~~l~~~pRPGHAD~t~~~KYg~-~D~rGGGRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG~i~~~~~ 219 (412)
|+||||+++++.||||||||+|++|||+ +|+||||||||||||+||||||||||||++ +||+|.|||++||+|+++..
T Consensus 81 ~~s~dy~~~~~~pRPGHAD~~~~~KYg~~~d~~gggr~SaReTa~rVaaGaiAk~~L~~-~gI~i~s~v~~IG~i~~~~~ 159 (344)
T cd07304 81 QRSWDYSMLKTLPRPGHADYTGFLKYGGFDDRRGGGRSSARETAARVAAGAVAKKLLKE-FGIEVVAHVKSIGGIEDEPF 159 (344)
T ss_pred CCCcchhhccCCCCCCccccchhhccCCccccCccchhHHHHHHHHHHHHHHHHHHHHH-CCcEEEEEEEEECCEecCcc
Confidence 9999999999999999999999999987 999999999999999999999999999998 59999999999999987532
Q ss_pred CCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeecCCCCCCccccchHHHHHHHhcCCCccc
Q 015142 220 VVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATK 299 (412)
Q Consensus 220 ~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ar~~GDSlGGvve~v~~gvP~GLG~PvFdkLea~LA~almSIpAvK 299 (412)
... ....++++++++++|||++++++|+++|++||++||||||+|||+++|||+|||+|+|||||++||+|||||||||
T Consensus 160 ~~~-~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~f~klda~la~a~~sIpAvK 238 (344)
T cd07304 160 DLD-EEELLEEAEESPVRCPDPEAEEKMKELIDEAKKEGDSVGGVVEVVATGVPAGLGSPVFDKLDARLAQALMSIPAVK 238 (344)
T ss_pred ccc-chhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCCCCccccccchHHHHHHhcCcCcee
Confidence 111 1113678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCCceEEEEEEccCCcccccccceeccCCc-----
Q 015142 300 GFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVSLISLPLSIKT----- 374 (412)
Q Consensus 300 GvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVdl~t~~----- 374 (412)
|||||.||++++|+|||+||+|++++ ++++|+|||+|||+|||||||||+||++|||||||.+||+|||+++++
T Consensus 239 gve~G~Gf~~a~~~GSe~nD~~~~~~-~~~~~~TN~aGGI~GGISnG~pIv~rva~KP~pSi~~~q~Tvd~~~~~~~~~~ 317 (344)
T cd07304 239 GVEIGSGFEAARMRGSEVNDEIYYDE-GGIKTKTNNAGGILGGISNGEPIVFRVAFKPTPSIAKPQKTVDLTGEETELAV 317 (344)
T ss_pred EEEECcchhhhhccCcccCcceeeCC-CceeecccCccCccccccCCCcEEEEEEeCCCccccccccceeCCCCEeeeec
Confidence 99999999999999999999999876 689999999999999999999999999999999999999999997764
Q ss_pred -ccccCchh----hHH--HHHHHHHH
Q 015142 375 -NSHVGTTL----PIV--MYSLCFIL 393 (412)
Q Consensus 375 -~~~~p~~~----pvV--~~~l~~~~ 393 (412)
++||||++ ||| |+||+++|
T Consensus 318 ~gRhDpcivpra~~V~Eam~A~vlad 343 (344)
T cd07304 318 KGRHDPCAVPRAVPVVEAMVALVLAD 343 (344)
T ss_pred CCCCCcCcccccHHHHHHHHHHHHhc
Confidence 56777776 455 66666654
No 6
>PRK05382 chorismate synthase; Validated
Probab=100.00 E-value=2.1e-130 Score=979.20 Aligned_cols=330 Identities=52% Similarity=0.802 Sum_probs=310.6
Q ss_pred CceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeeccCcEEEEEec
Q 015142 59 TYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPN 138 (412)
Q Consensus 59 ~~frvttfGESHG~aiG~VIDG~PaGl~i~~ediq~~L~RRrpG~~~~tT~R~E~D~v~ilSGv~~G~TtGtPIa~~I~N 138 (412)
++||++|||||||++|||||||||||++||+|+||++|+||||||++++|||+|.|+|+||||||+|+|||+||+++|+|
T Consensus 1 ~~~r~ttfGESHG~aig~vIdG~PaGl~i~~e~i~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~g~TtG~PI~~~I~N 80 (359)
T PRK05382 1 KLFRVTTFGESHGPALGAVIDGCPAGLPLTEEDIQKELDRRRPGYSRGTTMRIEPDEVEILSGVFEGKTTGTPIALLIRN 80 (359)
T ss_pred CeEEEEEEecCCCCeeEEEEcCCCCCCEeCHHHHHHHHHccCCCCCCCCCCCCCCCceEEeecccCCCcCCCCeEEEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCccccccccccCCccCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeeceecCC
Q 015142 139 TDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPE 218 (412)
Q Consensus 139 ~D~~s~DY~~l~~~pRPGHAD~t~~~KYg~~D~rGGGRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG~i~~~~ 218 (412)
+|++|+||+++++.||||||||||++|||++|+||||||||||||+||||||||||||++ +||+|.|||++||+|+..
T Consensus 81 ~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~d~~gggr~SaReTa~rVaaGaiAk~~L~~-~gI~i~s~v~~IG~i~~~- 158 (359)
T PRK05382 81 TDQRSKDYSEIKTRPRPGHADYTYFLKYGFRDYRGGGRSSARETAARVAAGAVAKKLLKE-LGIEVRGHVVQIGGIEAD- 158 (359)
T ss_pred CCCCCcchhhccCCCCCCccchhhHhhcCCcccCCcchhhHHHHHHHHHHHHHHHHHHHH-CCeEEEEEEEEEcCCcCC-
Confidence 999999999999999999999999999999999999999999999999999999999986 799999999999999742
Q ss_pred CCCCcccccH-HhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeecCCCCCCccccchHHHHHHHhcCCCc
Q 015142 219 DVVDHEMLTL-DQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPA 297 (412)
Q Consensus 219 ~~~~~~~~~~-~~i~~~~v~c~d~~~~~~m~~~I~~ar~~GDSlGGvve~v~~gvP~GLG~PvFdkLea~LA~almSIpA 297 (412)
.+ ..++ +++++++++|||++++++|+++|++||++||||||+|||+++|||+|||+|+|||||++||+|||||||
T Consensus 159 --~~--~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~f~kLda~la~a~msIpA 234 (359)
T PRK05382 159 --LD--WEEVEERADANPVRCPDPEAEEEMEELIDEAKKEGDSLGGVVEVVAEGVPAGLGEPVFDKLDADLAHALMSINA 234 (359)
T ss_pred --CC--HHHHHhHhhcCCcCCCCHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCCCCccccccchHHHHHHhcCcCc
Confidence 11 1123 467789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCCceEEEEEEccCCcccccccceeccCCcc--
Q 015142 298 TKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVSLISLPLSIKTN-- 375 (412)
Q Consensus 298 vKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVdl~t~~~-- 375 (412)
|||||||.||+++.|+|||+||+|+++ +++|+|||+|||+|||||||||+||++|||||||.+||+|||+.|+|+
T Consensus 235 vKgvE~G~Gf~~a~~~GSe~nD~~~~~---~~~~~tN~~GGI~GGISnG~pIv~rva~KP~pSi~~~q~Tvdl~t~e~~~ 311 (359)
T PRK05382 235 VKGVEIGDGFAAARLRGSEVNDEIYYT---GIGRLTNHAGGILGGISNGEPIVVRVAFKPTPSIRKPQRTVDIRTGEPTE 311 (359)
T ss_pred eeEEEECcchhhccccCcccCceeecC---CCeecccCCCCccccccCCCcEEEEEEecCcchhcccccCcccccCCeee
Confidence 999999999999999999999999752 489999999999999999999999999999999999999999998875
Q ss_pred -----cccCchh----hHH--HHHHHHHHHHhh
Q 015142 376 -----SHVGTTL----PIV--MYSLCFILLLWI 397 (412)
Q Consensus 376 -----~~~p~~~----pvV--~~~l~~~~~~~~ 397 (412)
+||||++ ||| |+||+++|+++.
T Consensus 312 ~~~~gRhDpcivpra~~V~Eam~A~vLad~~l~ 344 (359)
T PRK05382 312 LATKGRHDPCVVPRAVPVAEAMVALVLADHLLR 344 (359)
T ss_pred eccCCCCCCEeecchHHHHHHHHHHHHHHHHHH
Confidence 4666665 566 889999987764
No 7
>PRK12463 chorismate synthase; Reviewed
Probab=100.00 E-value=1.1e-129 Score=982.03 Aligned_cols=338 Identities=37% Similarity=0.530 Sum_probs=314.5
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeeccCcEEEEEecCC
Q 015142 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTD 140 (412)
Q Consensus 61 frvttfGESHG~aiG~VIDG~PaGl~i~~ediq~~L~RRrpG~~~~tT~R~E~D~v~ilSGv~~G~TtGtPIa~~I~N~D 140 (412)
||+||||||||++||||||||||||+||+|+||++|+||||||++++|||+|.|+|+||||||+|+|||+||+++|+|+|
T Consensus 1 ~r~tt~GESHG~~ig~VIdG~PaGl~l~~e~I~~~L~RR~pG~~~~~t~r~E~D~v~ilSGv~~G~TtGtPI~~~I~N~D 80 (390)
T PRK12463 1 MRYITAGESHGPQLTVILEGVPAGLTLAAEHINKELLRRQKGHGRGRRMQIETDTVEIVSGVRHGMTLGSPITLIVKNDD 80 (390)
T ss_pred CeEeecccCCCceeEEEEcCCCCCCccCHHHHHHHHhccCCCCCCCCCCCCCCCceEEeecccCCCcCCCCeEEEEEccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC---------------CCCccccccCCCCCccccccccccCCccCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCCeEE
Q 015142 141 QR---------------GHDYSEMSVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEI 204 (412)
Q Consensus 141 ~~---------------s~DY~~l~~~pRPGHAD~t~~~KYg~~D~rGG-GRsSaReTa~rVaAGaIAk~~L~~~~GI~I 204 (412)
|+ |+||+++++.||||||||+|++|||++|+||| |||||||||+||||||||||+|++ +||+|
T Consensus 81 ~~nw~~~m~~~~~~~~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~Rgglgr~SaReTa~rVaaGavAk~~L~~-~gI~i 159 (390)
T PRK12463 81 FKHWTKVMGAEPISEKESKEMKRTITKPRPGHADLNGAIKYGHRDIRNVLERSSARETTVRVAAGAVAKQILKE-LGVEI 159 (390)
T ss_pred CCcchhccCccccccccchhhhcccCCCCCCCcchhhHHhcCCcccCCCcccchHHHHHHHHHHHHHHHHHHHH-CCEEE
Confidence 99 99999999999999999999999999999999 999999999999999999999986 79999
Q ss_pred EEEEEEeeceecCCCCCCcccccHH-hhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeecCCCCCCcc-cc
Q 015142 205 LAYVSQAHNVVLPEDVVDHEMLTLD-QVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPV-FD 282 (412)
Q Consensus 205 ~s~v~~IG~i~~~~~~~~~~~~~~~-~i~~~~v~c~d~~~~~~m~~~I~~ar~~GDSlGGvve~v~~gvP~GLG~Pv-Fd 282 (412)
.|||++||+|+.... .+.+..++. .+++++++|||++++++|+++|++||++||||||+|||+++|||+|||+|+ ||
T Consensus 160 ~s~v~~IG~v~~~~~-~~~~~~~~~~~~~~s~~~c~d~~~~~~m~~~I~~ak~~gDSlGGivev~~~gvP~GLGspv~fd 238 (390)
T PRK12463 160 AGHVLEIGGVKAKHI-SNLSIEEIQTITENSPVRCLDKTVEQEMMDAIDNAKSSGDSIGGIVEVIAEGMPIGVGSYVHYD 238 (390)
T ss_pred EEEEEEECCEecCcc-cccCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEECCCCCCCCCcccc
Confidence 999999999974310 011111233 388899999999999999999999999999999999999999999999999 98
Q ss_pred -chHHHHHHHhcCCCcccEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCCceEEEEEEccCCcc
Q 015142 283 -KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTI 361 (412)
Q Consensus 283 -kLea~LA~almSIpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI 361 (412)
|||++||+||||||||||||||.||+.+.|+|||+||+|+++++++++|+|||+|||+|||||||||+||++|||||||
T Consensus 239 ~kLda~LA~A~msIpAVKgVE~G~Gf~~a~~~GSe~nD~~~~~~~~~~~~~tN~aGGI~GGISnG~pIv~r~a~KP~pSi 318 (390)
T PRK12463 239 RKLDAKLAGAIMSINAFKGAEIGVGFEAARQPGSKVHDEILWDEEQGYTRKTNNAGGLEGGMTTGMPIVVRGVMKPIPTL 318 (390)
T ss_pred ccchHHHHHHhcCcCceeEEEEccchhhhhCCCcccCceeEecCCCCeeecccCcccccccccCCCcEEEEEEECCcccc
Confidence 9999999999999999999999999999999999999999876678999999999999999999999999999999999
Q ss_pred cccccceeccCCc------ccccCchh----hHH--HHHHHHHHHHhh-hCC
Q 015142 362 GVSLISLPLSIKT------NSHVGTTL----PIV--MYSLCFILLLWI-CSK 400 (412)
Q Consensus 362 ~k~q~TVdl~t~~------~~~~p~~~----pvV--~~~l~~~~~~~~-c~~ 400 (412)
.+||+|||++|+| ++||||++ ||+ |+||+++|.++. +..
T Consensus 319 ~~pq~TVd~~t~e~~~~~~gRhDpc~vprA~~V~Eam~A~vLad~~l~~fg~ 370 (390)
T PRK12463 319 YKPLASVDIDTKEAFQASIERSDSCAVPAAGVVAESVVAWELAHALVEQFGK 370 (390)
T ss_pred cccccCcccCCCceeeecCCCCCCccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999987 45677766 455 999999997765 443
No 8
>KOG4492 consensus Chorismate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-100 Score=739.11 Aligned_cols=351 Identities=74% Similarity=1.137 Sum_probs=334.1
Q ss_pred ccccCceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeeccCcEEE
Q 015142 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 134 (412)
Q Consensus 55 ntfG~~frvttfGESHG~aiG~VIDG~PaGl~i~~ediq~~L~RRrpG~~~~tT~R~E~D~v~ilSGv~~G~TtGtPIa~ 134 (412)
++||++|||||+||||=+-+|||+||||||.+|+|.|||.+|.|||||||+.+|||+|+|+|+|.||---|+|+||||+|
T Consensus 2 SsFGtLFrVTTYGESHCKSVGCIVdGcPPGM~LTEsD~Q~QLTRRRPGQS~LtTPR~EKD~V~IQSGTEFG~TLGTPI~M 81 (368)
T KOG4492|consen 2 SSFGTLFRVTTYGESHCKSVGCIVDGCPPGMPLTESDLQFQLTRRRPGQSRLTTPRKEKDTVRIQSGTEFGMTLGTPIHM 81 (368)
T ss_pred CcccceEEEeeeccccCcccceEeccCCCCCCcchhhcceeeeccCCCccccCCCccccceEEEecCcccceecCCceEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCccccccCCCCCccccccccccCCccCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeece
Q 015142 135 FVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNV 214 (412)
Q Consensus 135 ~I~N~D~~s~DY~~l~~~pRPGHAD~t~~~KYg~~D~rGGGRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG~i 214 (412)
+|.|+||+..||+.|.+.|||+||||||..|||...-.||||+|||||+.|||+||||+|+|++.+|+||.|||+|||.|
T Consensus 82 ~v~N~DQrPHDYSDMD~~PRPSHAD~TY~EKYGvKASSGGGRsSARETIGRVA~GAiAeK~L~q~~gvEIvAfVsqvg~i 161 (368)
T KOG4492|consen 82 FVPNTDQRPHDYSDMDVAPRPSHADATYDEKYGVKASSGGGRSSARETIGRVAPGALAKKILKQFAGTEILAYVSQVHHV 161 (368)
T ss_pred EccCCcCCCCchhhhccCCCCcccccchhhhcCeeeccCCCchhhhhhhhccCchHHHHHHHHHhcCceEEeEecccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeecCCCCCCccccchHHHHHHHhcC
Q 015142 215 VLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMS 294 (412)
Q Consensus 215 ~~~~~~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ar~~GDSlGGvve~v~~gvP~GLG~PvFdkLea~LA~almS 294 (412)
..+.+..+.+...+|++++++++|||++.+++|.+.|++.+-.+||+||++.|+++|.|-|||.|+||||++.||++|||
T Consensus 162 ~~p~~~~d~e~~T~E~~~~~~~rcpn~~~ae~m~k~i~~~r~~~~s~ggvvtc~vrn~p~glg~p~fdklea~la~a~~s 241 (368)
T KOG4492|consen 162 VLPEELVDHENLTLEQIENNIVRCPNPEYAEKMIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMS 241 (368)
T ss_pred ecchhhcCcchhhhhhhcccceeCCCHHHHHHHHHHHHhccCCCccccceEEEEEecCCCCCCCchHHHHHHHHHHHhcC
Confidence 99877777777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCCceEEEEEEccCCcccccccceeccCCc
Q 015142 295 LPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVSLISLPLSIKT 374 (412)
Q Consensus 295 IpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVdl~t~~ 374 (412)
+|+.||+|||+||.+....|++|||+|+.++.+.++++||++||++||||||+.|.++++|||++||...|.|+-....+
T Consensus 242 ~pa~Kgfe~gsgf~g~~~~g~~hnd~fy~ee~~r~rt~tn~sgg~qggisnGe~in~sv~fk~~~tig~~q~t~t~dk~e 321 (368)
T KOG4492|consen 242 LPATKGFEFGSGFAGTFLTGLEHNDEFYTDENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTIGRKQNTVTRDKVE 321 (368)
T ss_pred CcchhhhhhhccceeeccccccccCcccccccccceeecccccccccccccceeeeeeccccccccccceeeeeeccCcc
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999665543
Q ss_pred ------ccc----cCchhhHH--HHHHHHHHHHhhhCCCceeE
Q 015142 375 ------NSH----VGTTLPIV--MYSLCFILLLWICSKPSFAL 405 (412)
Q Consensus 375 ------~~~----~p~~~pvV--~~~l~~~~~~~~c~~~~f~~ 405 (412)
.+| .|+++|+| |.+||+.++|+.-.--.|++
T Consensus 322 ~~~~a~grhdp~v~pravp~veam~alvlvd~l~~q~a~~~~~ 364 (368)
T KOG4492|consen 322 TEMIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCHLF 364 (368)
T ss_pred eeEeeccccCcccCccchhhhhhhccceehhHHHHHHHHhhcc
Confidence 345 67788999 99999999988744334444
No 9
>KOG4492 consensus Chorismate synthase [Amino acid transport and metabolism]
Probab=99.08 E-value=3.3e-12 Score=125.49 Aligned_cols=155 Identities=6% Similarity=-0.237 Sum_probs=135.2
Q ss_pred HHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeecCCCCCCccccchHHHHHHHhcCCCcccEEEecccc
Q 015142 228 LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGF 307 (412)
Q Consensus 228 ~~~i~~~~v~c~d~~~~~~m~~~I~~ar~~GDSlGGvve~v~~gvP~GLG~PvFdkLea~LA~almSIpAvKGvEfG~GF 307 (412)
.+.+.....+|+....+..|...+..++..-|+++++|.|+..+||-++++|.|+|+++.+|+++|++|+-|-++.+.+|
T Consensus 191 ae~m~k~i~~~r~~~~s~ggvvtc~vrn~p~glg~p~fdklea~la~a~~s~pa~Kgfe~gsgf~g~~~~g~~hnd~fy~ 270 (368)
T KOG4492|consen 191 AEKMIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSGFAGTFLTGLEHNDEFYT 270 (368)
T ss_pred HHHHHHHHHhccCCCccccceEEEEEecCCCCCCCchHHHHHHHHHHHhcCCcchhhhhhhccceeeccccccccCcccc
Confidence 34455556899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccccceeec-CCCceeecCCCcccccccccCCCceEEEEEEccCCcccccccceeccCC------cccccCc
Q 015142 308 AGTFLTGSEHNDEFYTD-EFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVSLISLPLSIK------TNSHVGT 380 (412)
Q Consensus 308 ~~a~~~GSe~nD~~~~~-~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVdl~t~------~~~~~p~ 380 (412)
+ .+-+++.+||-++-. +.++..+.+|+++|..+++|||+...+-..+|-..+|.-.|.+=-..+. |..|+||
T Consensus 271 e-e~~r~rt~tn~sgg~qggisnGe~in~sv~fk~~~tig~~q~t~t~dk~e~~~~a~grhdp~v~pravp~veam~alv 349 (368)
T KOG4492|consen 271 D-ENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTIGRKQNTVTRDKVETEMIARGRHDPCVVPRAVPMVEAMVALV 349 (368)
T ss_pred c-ccccceeecccccccccccccceeeeeeccccccccccceeeeeeccCcceeEeeccccCcccCccchhhhhhhccce
Confidence 9 899999999998732 2235678999999999999999999999999999999999987655553 4455665
Q ss_pred hhh
Q 015142 381 TLP 383 (412)
Q Consensus 381 ~~p 383 (412)
.+|
T Consensus 350 lvd 352 (368)
T KOG4492|consen 350 LVD 352 (368)
T ss_pred ehh
Confidence 554
No 10
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun
Probab=83.89 E-value=1.9 Score=44.59 Aligned_cols=76 Identities=24% Similarity=0.364 Sum_probs=50.4
Q ss_pred eEEeeeecccCCeeeEEeecCCCCc--cCCHHHHHHHhhh--------------------hCCCCCCCCCCCCCCCeEEE
Q 015142 61 FRVTTFGESHGGGVGCIIDGCPPRI--PLSEADMQVDLDR--------------------RRPGQSRITTPRKETDTCKI 118 (412)
Q Consensus 61 frvttfGESHG~aiG~VIDG~PaGl--~i~~ediq~~L~R--------------------RrpG~~~~tT~R~E~D~v~i 118 (412)
.+..--|+|-|..+-|++.|||+|| ++. +.|+..|.. +.+|..--.....+.+++..
T Consensus 191 ~~ak~~gDSlGG~ve~~~~gvP~GLG~p~f-~klda~la~a~~sIpAvKgve~G~Gf~~a~~~GSe~nD~~~~~~~~~~~ 269 (344)
T cd07304 191 DEAKKEGDSVGGVVEVVATGVPAGLGSPVF-DKLDARLAQALMSIPAVKGVEIGSGFEAARMRGSEVNDEIYYDEGGIKT 269 (344)
T ss_pred HHHHHcCCCCceEEEEEEECCCCCCCcccc-ccchHHHHHHhcCcCceeEEEECcchhhhhccCcccCcceeeCCCceee
Confidence 3444579999999999999999998 333 555555433 33443222222333444443
Q ss_pred E----ccccCCeeccCcEEEEEe
Q 015142 119 Y----SGVSEGVTTGTPIHVFVP 137 (412)
Q Consensus 119 l----SGv~~G~TtGtPIa~~I~ 137 (412)
. .|+.-|.|+|.||-+-+.
T Consensus 270 ~TN~aGGI~GGISnG~pIv~rva 292 (344)
T cd07304 270 KTNNAGGILGGISNGEPIVFRVA 292 (344)
T ss_pred cccCccCccccccCCCcEEEEEE
Confidence 3 588999999999999874
No 11
>PF01264 Chorismate_synt: Chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows a high degree of sequence conservation [, ]. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 4ECD_B 1Q1L_D 1QXO_A 1UMF_B 1UM0_D 1SQ1_A 2O12_A 2O11_A 1ZTB_A 2QHF_A ....
Probab=79.31 E-value=0.72 Score=47.71 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=45.4
Q ss_pred EeeeecccCCeeeEEeecCCCCc--cCCHHHHHHHhhh--------------------hCCCCCCCCCCCCCCCeEEEE-
Q 015142 63 VTTFGESHGGGVGCIIDGCPPRI--PLSEADMQVDLDR--------------------RRPGQSRITTPRKETDTCKIY- 119 (412)
Q Consensus 63 vttfGESHG~aiG~VIDG~PaGl--~i~~ediq~~L~R--------------------RrpG~~~~tT~R~E~D~v~il- 119 (412)
..--|+|-|..+-|++.|+|+|| ++ .+.|+..|.. +.+|..--.....+.+++...
T Consensus 191 ak~~gDSlGG~ve~~~~gvP~GLG~p~-fdkLda~la~al~sIpAvKgvEfG~Gf~~a~~~GSe~nD~~~~~~~~~~~~t 269 (346)
T PF01264_consen 191 AKKEGDSLGGIVEVVATGVPAGLGSPV-FDKLDARLAQALMSIPAVKGVEFGDGFEAASMRGSEVNDEIYYDDGKIKRKT 269 (346)
T ss_dssp HHHTTGGB-EEEEEEEES--TT-SBSS-CCSHHHHHHHHHHTSTTEEEEEETTGGGGGGSBHHHHS-SEEECTTTEEESS
T ss_pred HHHhCCCCCeEEEEEEEecCCCCCCCC-cCcHHHHHHHHhhCCCCeeeEEecCcHHHhhcchhhcccceecccccccccC
Confidence 34458999999999999999998 44 5566666643 344432222222333344443
Q ss_pred ---ccccCCeeccCcEEEEEec
Q 015142 120 ---SGVSEGVTTGTPIHVFVPN 138 (412)
Q Consensus 120 ---SGv~~G~TtGtPIa~~I~N 138 (412)
.|+.-|.|+|.||-+-+-=
T Consensus 270 N~aGGI~GGISnG~pIv~r~a~ 291 (346)
T PF01264_consen 270 NNAGGILGGISNGMPIVFRVAF 291 (346)
T ss_dssp -TTTTEETTEEBSS-EEEEEEE
T ss_pred CCcccccccccCCceEEEEEEe
Confidence 4889999999999998743
No 12
>PLN02754 chorismate synthase
Probab=77.68 E-value=4.4 Score=43.01 Aligned_cols=77 Identities=22% Similarity=0.385 Sum_probs=50.8
Q ss_pred ceEEeeeecccCCeeeEEeecCCCCc--cCCHHHHHHHhhh--------------------hCCCCCCCCCCC--CCCCe
Q 015142 60 YFRVTTFGESHGGGVGCIIDGCPPRI--PLSEADMQVDLDR--------------------RRPGQSRITTPR--KETDT 115 (412)
Q Consensus 60 ~frvttfGESHG~aiG~VIDG~PaGl--~i~~ediq~~L~R--------------------RrpG~~~~tT~R--~E~D~ 115 (412)
+-+..--|+|-|..+-|++.|||+|| ++ .+.|+..|.. +.+|. ....+= .|.++
T Consensus 223 I~~ak~~GDSlGGivev~~~gvP~GLG~pv-fdkLda~LA~Al~SIpAVKGVEfG~GF~~a~~~GS-e~nD~~~~~~~g~ 300 (413)
T PLN02754 223 IDAVRVRGDSVGGVVTCIVRNVPRGLGSPV-FDKLEAELAKAMMSLPATKGFEIGSGFAGTLLTGS-EHNDEFYMDEHGR 300 (413)
T ss_pred HHHHHHcCCCcccEEEEEEECCCCCCCccc-cccchHHHHHHhcCcCceeEEEEccchhhhhcccc-ccCcceeecCCCc
Confidence 34445579999999999999999998 44 3556655543 23342 111111 13344
Q ss_pred EEEE----ccccCCeeccCcEEEEEec
Q 015142 116 CKIY----SGVSEGVTTGTPIHVFVPN 138 (412)
Q Consensus 116 v~il----SGv~~G~TtGtPIa~~I~N 138 (412)
+... .|+.-|.|+|.||-+-+.=
T Consensus 301 ~~~~TN~aGGI~GGISnG~pIv~rva~ 327 (413)
T PLN02754 301 IRTRTNRSGGIQGGISNGEIIVMRIAF 327 (413)
T ss_pred eEecccCCCcccccccCCCcEEEEEEe
Confidence 5444 5889999999999998743
No 13
>COG0082 AroC Chorismate synthase [Amino acid transport and metabolism]
Probab=72.00 E-value=7 Score=40.92 Aligned_cols=74 Identities=26% Similarity=0.382 Sum_probs=50.8
Q ss_pred eeeecccCCeeeEEeecCCCCc--cCCHHHHHHHhhh--------------------hCCCCCCCCCCCCCCCeEEEE--
Q 015142 64 TTFGESHGGGVGCIIDGCPPRI--PLSEADMQVDLDR--------------------RRPGQSRITTPRKETDTCKIY-- 119 (412)
Q Consensus 64 ttfGESHG~aiG~VIDG~PaGl--~i~~ediq~~L~R--------------------RrpG~~~~tT~R~E~D~v~il-- 119 (412)
.=-|.|=|..|-||..|+|+|| ++ .+.++.+|++ +++|.....-...+. ++.+.
T Consensus 198 k~~GDSiGgvvevva~gvP~GLG~pv-fdkLda~lA~AlmsI~AvKGVEiG~GF~~a~~~GSe~~De~~~~~-~~~~~tN 275 (369)
T COG0082 198 KKEGDSIGGVVEVVAEGVPAGLGEPV-FDKLDAKLAHALMSIPAVKGVEIGDGFEAARMRGSEANDEITLDG-GIVRKTN 275 (369)
T ss_pred HhcCCCcccEEEEEEeCCCCCCCCcc-cccchHHHHHHhhCCccceeEEeccchhhhhcccccccCceeeCC-CeeEccc
Confidence 3458999999999999999998 44 5566666643 445533323333333 44454
Q ss_pred --ccccCCeeccCcEEEEEecC
Q 015142 120 --SGVSEGVTTGTPIHVFVPNT 139 (412)
Q Consensus 120 --SGv~~G~TtGtPIa~~I~N~ 139 (412)
.|+.-|.|+|-||-+-+.=+
T Consensus 276 ~~GGilGGitnG~pIv~r~a~K 297 (369)
T COG0082 276 NAGGILGGITNGEPIVVRVAFK 297 (369)
T ss_pred cCCceeccccCCccEEEEEEeC
Confidence 38899999999999988543
No 14
>PRK12463 chorismate synthase; Reviewed
Probab=68.51 E-value=11 Score=39.74 Aligned_cols=73 Identities=23% Similarity=0.398 Sum_probs=48.7
Q ss_pred HcCCccccEEEEEEeecCCCCCCcc-ccchHHHHHHHhcCCCcccEEEecccccccccCCCccccceeecCCCceeecCC
Q 015142 256 VRGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTN 334 (412)
Q Consensus 256 ~~GDSlGGvve~v~~gvP~GLG~Pv-FdkLea~LA~almSIpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN 334 (412)
.-|+|-|-.+-|++.|+|+||= + .+.|+..|..---+ +|. ...++ .-.|.+. ..
T Consensus 5 t~GESHG~~ig~VIdG~PaGl~--l~~e~I~~~L~RR~pG--------~~~---~~t~r--~E~D~v~--------il-- 59 (390)
T PRK12463 5 TAGESHGPQLTVILEGVPAGLT--LAAEHINKELLRRQKG--------HGR---GRRMQ--IETDTVE--------IV-- 59 (390)
T ss_pred ecccCCCceeEEEEcCCCCCCc--cCHHHHHHHHhccCCC--------CCC---CCCCC--CCCCceE--------Ee--
Confidence 3589999999999999999985 4 46777777654321 111 11111 1123332 22
Q ss_pred CcccccccccCCCceEEEEEE
Q 015142 335 RSGGIQGGISNGEIINMRIAF 355 (412)
Q Consensus 335 ~aGGI~GGISnG~pIv~rva~ 355 (412)
.|+-.|.|+|.||.+.+--
T Consensus 60 --SGv~~G~TtGtPI~~~I~N 78 (390)
T PRK12463 60 --SGVRHGMTLGSPITLIVKN 78 (390)
T ss_pred --ecccCCCcCCCCeEEEEEc
Confidence 6889999999999999943
No 15
>PRK05382 chorismate synthase; Validated
Probab=67.46 E-value=14 Score=38.63 Aligned_cols=72 Identities=25% Similarity=0.420 Sum_probs=48.6
Q ss_pred cCCccccEEEEEEeecCCCCCCcc-ccchHHHHHHHhcCCCcccEEEecccccccccCCCccccceeecCCCceeecCCC
Q 015142 257 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 335 (412)
Q Consensus 257 ~GDSlGGvve~v~~gvP~GLG~Pv-FdkLea~LA~almSIpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~ 335 (412)
-|+|-|-.+-|++.|+|+||= + .+.|+..|..---+ +|. ...++ .-.|.+ ...
T Consensus 8 fGESHG~aig~vIdG~PaGl~--i~~e~i~~~L~RR~pG--------~~~---~~t~R--~E~D~v--------~il--- 61 (359)
T PRK05382 8 FGESHGPALGAVIDGCPAGLP--LTEEDIQKELDRRRPG--------YSR---GTTMR--IEPDEV--------EIL--- 61 (359)
T ss_pred EecCCCCeeEEEEcCCCCCCE--eCHHHHHHHHHccCCC--------CCC---CCCCC--CCCCce--------EEe---
Confidence 589999999999999999985 4 56777777754321 011 11111 112333 222
Q ss_pred cccccccccCCCceEEEEEE
Q 015142 336 SGGIQGGISNGEIINMRIAF 355 (412)
Q Consensus 336 aGGI~GGISnG~pIv~rva~ 355 (412)
.|+-.|.|+|.||.+.+.-
T Consensus 62 -SGv~~g~TtG~PI~~~I~N 80 (359)
T PRK05382 62 -SGVFEGKTTGTPIALLIRN 80 (359)
T ss_pred -ecccCCCcCCCCeEEEEEC
Confidence 5888899999999998876
No 16
>PF08712 Nfu_N: Scaffold protein Nfu/NifU N terminal; InterPro: IPR014824 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This domain is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [, ]. ; GO: 0005506 iron ion binding; PDB: 2FFM_A 1PQX_A 2K1H_A.
Probab=67.09 E-value=3.9 Score=34.11 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCCcccEEEecccccccccCC
Q 015142 285 EAELAKAMMSLPATKGFEVGSGFAGTFLTG 314 (412)
Q Consensus 285 ea~LA~almSIpAvKGvEfG~GF~~a~~~G 314 (412)
++-||++||.|+.||+|-+|..|=...+..
T Consensus 36 ~spLA~~Lf~i~gV~~Vf~~~dfItVtK~~ 65 (87)
T PF08712_consen 36 DSPLAQALFAIPGVKSVFIGDDFITVTKNP 65 (87)
T ss_dssp S-HHHHHHHTSTTEEEEEEETTEEEEEE-T
T ss_pred cCHHHHHhcCCCCEeEEEEECCEEEEeeCC
Confidence 478999999999999999999886655543
No 17
>TIGR00033 aroC chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation.
Probab=60.09 E-value=20 Score=37.51 Aligned_cols=74 Identities=28% Similarity=0.464 Sum_probs=49.2
Q ss_pred cCCccccEEEEEEeecCCCCCCcc-ccchHHHHHHHhcCCCcccEEEecccccccccCCCccccceeecCCCceeecCCC
Q 015142 257 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 335 (412)
Q Consensus 257 ~GDSlGGvve~v~~gvP~GLG~Pv-FdkLea~LA~almSIpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~ 335 (412)
-|+|-|-.+-|++.|+|+||= + .+.|+..|..---+ .+ ....++ .-.|.. ..
T Consensus 6 fGESHG~aig~vIdG~PaGl~--l~~e~i~~~L~RR~pG----------~~-~~~t~R--~E~D~v--------~i---- 58 (351)
T TIGR00033 6 FGESHGKAVGAIIDGCPAGLP--LTEEDIQPDLDRRRPG----------YS-RGTRMR--KENDEV--------EI---- 58 (351)
T ss_pred eecCCCCeeEEEEccCCCCCE--eCHHHHHHHHHccCCC----------CC-CCCCCC--CCCCce--------EE----
Confidence 489999999999999999985 4 46777777654211 11 011111 112322 22
Q ss_pred cccccccccCCCceEEEEEEcc
Q 015142 336 SGGIQGGISNGEIINMRIAFKP 357 (412)
Q Consensus 336 aGGI~GGISnG~pIv~rva~KP 357 (412)
-.|+..|.|+|.||.+.+.-|=
T Consensus 59 lSGv~~g~TtGtPI~~~I~N~d 80 (351)
T TIGR00033 59 LSGVFEGKTTGAPIALMIRNKD 80 (351)
T ss_pred eecccCCCcCCCCEEEEEEcCC
Confidence 2688899999999999997664
No 18
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=41.21 E-value=52 Score=36.12 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCc---------------cccEEEEEEeecCCCCCCccccchHHHHHHHhc--CCCcccEEEeccc
Q 015142 244 AEKMIAAIDAVRVRGDS---------------VGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMM--SLPATKGFEVGSG 306 (412)
Q Consensus 244 ~~~m~~~I~~ar~~GDS---------------lGGvve~v~~gvP~GLG~PvFdkLea~LA~alm--SIpAvKGvEfG~G 306 (412)
-+++.+++++++++|.. +.|...+=|-|||...| -++.+++.|+-.-| .+| |-=|-++.|
T Consensus 451 ~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~--~~~g~~~l~s~~~~p~g~p-v~~v~i~~~ 527 (577)
T PLN02948 451 PERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTS--HLDGLDSLLSIVQMPRGVP-VATVAIGNA 527 (577)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccCCCEEEcCCCCC--CCCcHHHHHHHhcCCCCCe-EEEEecCCh
Confidence 34577788888888754 22333445678888776 57899999999999 998 888888887
Q ss_pred ccccc
Q 015142 307 FAGTF 311 (412)
Q Consensus 307 F~~a~ 311 (412)
+.++.
T Consensus 528 ~~aa~ 532 (577)
T PLN02948 528 TNAGL 532 (577)
T ss_pred HHHHH
Confidence 76553
No 19
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=34.42 E-value=15 Score=19.41 Aligned_cols=9 Identities=67% Similarity=1.689 Sum_probs=7.2
Q ss_pred EEEeecCCC
Q 015142 267 CIVRNCPRG 275 (412)
Q Consensus 267 ~v~~gvP~G 275 (412)
|.++|+|.|
T Consensus 1 C~i~nCP~G 9 (9)
T PF00220_consen 1 CYIRNCPIG 9 (9)
T ss_pred CccccCCCC
Confidence 568899976
No 20
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=33.36 E-value=1.3e+02 Score=28.25 Aligned_cols=86 Identities=22% Similarity=0.259 Sum_probs=53.2
Q ss_pred HHHHHhhcCCeEEEEEEEEeeceecCCCCCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCcc----------
Q 015142 192 AKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSV---------- 261 (412)
Q Consensus 192 Ak~~L~~~~GI~I~s~v~~IG~i~~~~~~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ar~~GDSl---------- 261 (412)
|.+.|++ |||...-.|.+.+.- -+++.++++++.++|..+
T Consensus 17 a~~~L~~-~gi~~dv~V~SaHRt-----------------------------p~~~~~~~~~a~~~g~~viIa~AG~aa~ 66 (156)
T TIGR01162 17 AADILEE-FGIPYELRVVSAHRT-----------------------------PELMLEYAKEAEERGIKVIIAGAGGAAH 66 (156)
T ss_pred HHHHHHH-cCCCeEEEEECcccC-----------------------------HHHHHHHHHHHHHCCCeEEEEeCCccch
Confidence 4567877 699866665544421 234555666677666421
Q ss_pred -----ccEEEEEEeecCCCCCCccccchHHHHHHHhc--CCCcccEEEeccccccc
Q 015142 262 -----GGVVTCIVRNCPRGLGSPVFDKLEAELAKAMM--SLPATKGFEVGSGFAGT 310 (412)
Q Consensus 262 -----GGvve~v~~gvP~GLG~PvFdkLea~LA~alm--SIpAvKGvEfG~GF~~a 310 (412)
.|...+=|-|||.-.+ .++.+|+.|+-.-| .+| |-=|-|+.||.++
T Consensus 67 Lpgvva~~t~~PVIgvP~~~~--~l~G~daLlS~vqmP~gvp-vatv~I~~~~nAa 119 (156)
T TIGR01162 67 LPGMVAALTPLPVIGVPVPSK--ALSGLDSLLSIVQMPSGVP-VATVAIGNAGNAA 119 (156)
T ss_pred hHHHHHhccCCCEEEecCCcc--CCCCHHHHHHHhcCCCCCe-eEEEEcCChhHHH
Confidence 1222333556776544 37899999998886 566 7777787776544
No 21
>TIGR02725 phenyl_P_gamma phenylphosphate carboxylase, gamma subunit. Members of this protein family are the gamma subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. The gamma subunit has no known homologs.
Probab=30.52 E-value=46 Score=27.55 Aligned_cols=45 Identities=27% Similarity=0.442 Sum_probs=41.9
Q ss_pred ccEEEEEEeecCCCCCCccccchHHHHHHHhcCCCcccEEEeccc
Q 015142 262 GGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSG 306 (412)
Q Consensus 262 GGvve~v~~gvP~GLG~PvFdkLea~LA~almSIpAvKGvEfG~G 306 (412)
|--.|..++-+-+||-.+.|.++.|+++.|+--.|.---|.||-|
T Consensus 17 gk~lelsvrtlnpglkkytyqrv~ae~s~aldkfpdqlqvr~grg 61 (84)
T TIGR02725 17 GKELELSVRTLNPGLKKYTYQRVKAELSNALDKFPDQLQVRFGRG 61 (84)
T ss_pred CceEEEEEeecCccHHHHHHHHHHHHhhhhhhhCcHhheeeeccC
Confidence 556799999999999999999999999999999999999999987
No 22
>PRK00587 hypothetical protein; Provisional
Probab=24.18 E-value=56 Score=28.32 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHcCCccccEEEEEEee
Q 015142 243 YAEKMIAAIDAVRVRGDSVGGVVTCIVRN 271 (412)
Q Consensus 243 ~~~~m~~~I~~ar~~GDSlGGvve~v~~g 271 (412)
..+++.+.+.+..-+|.+ ||.|+++++|
T Consensus 16 km~~~QeeL~~~~v~g~~-gGlVkV~~nG 43 (99)
T PRK00587 16 TMEKKQKEFEEKEFDFDY-KKYILIKIKG 43 (99)
T ss_pred HHHHHHHHHhccEEEEEc-CCeEEEEEEc
Confidence 355677788888888999 9999999986
No 23
>PF04008 Adenosine_kin: Adenosine specific kinase; InterPro: IPR007153 The structure of a member of this family from the hyperthermophilic archaeon Pyrobaculum aerophilum contains a modified histidine residue which is interpreted as stable phosphorylation. In vitro binding studies confirmed that adenosine and AMP but not ADP or ATP bind to the protein [].; PDB: 1VGG_A 1RLH_A 1WVQ_A 2GL0_F 2JB7_B 2EKM_C 2D16_D.
Probab=23.15 E-value=78 Score=29.69 Aligned_cols=44 Identities=27% Similarity=0.474 Sum_probs=29.3
Q ss_pred cCceEEeeeecccCCeeeEEeecCCC-CccCCHHHHH--HHhhhhCCCC
Q 015142 58 GTYFRVTTFGESHGGGVGCIIDGCPP-RIPLSEADMQ--VDLDRRRPGQ 103 (412)
Q Consensus 58 G~~frvttfGESHG~aiG~VIDG~Pa-Gl~i~~ediq--~~L~RRrpG~ 103 (412)
-+-+++.++--..|.+|-+||||.+| |++ +++|++ ++|-| +=||
T Consensus 107 ANP~qVivaet~~GrgvlGVvDG~~p~GvE-~eed~~~Rk~lLr-~iGY 153 (155)
T PF04008_consen 107 ANPLQVIVAETEQGRGVLGVVDGFSPKGVE-TEEDIKERKELLR-KIGY 153 (155)
T ss_dssp SSSEEEEEEEESSEEEEEEEEESS--SEE---HHHHHHHHHHHH-HTTS
T ss_pred CCCEEEEEEEcCCCcEEEEEEcCCCCCCcc-CHHHHHHHHHHHH-HhCc
Confidence 56789999988899999999999976 555 555554 23433 3465
No 24
>COG0250 NusG Transcription antiterminator [Transcription]
Probab=20.56 E-value=2.5e+02 Score=26.59 Aligned_cols=54 Identities=20% Similarity=0.251 Sum_probs=37.3
Q ss_pred CeeeEEeecC-CCCccCCHHHHHHHhhhhCCCC--CCCCCCCCCCCeEEEEccccCC
Q 015142 72 GGVGCIIDGC-PPRIPLSEADMQVDLDRRRPGQ--SRITTPRKETDTCKIYSGVSEG 125 (412)
Q Consensus 72 ~aiG~VIDG~-PaGl~i~~ediq~~L~RRrpG~--~~~tT~R~E~D~v~ilSGv~~G 125 (412)
+++.+.|-+. +--.+|++++++..|.+-.... -+....=.+.|.|+|.+|-|.|
T Consensus 83 pgV~GfVg~~~~~P~pi~~~ei~~~l~~~~~~~~~~~~~~~~e~Gd~VrI~~GpFa~ 139 (178)
T COG0250 83 PGVTGFVGSGGAKPVPLSEEEIEHILGFLEEEVAPKKPKVDFEPGDVVRIIDGPFAG 139 (178)
T ss_pred CCcEEEeccCCCCCcccCHHHHHHHHhhccccccCCcccccCCCCCEEEEeccCCCC
Confidence 3445555554 6778999999999666555431 1223444679999999999977
Done!