Query 015142
Match_columns 412
No_of_seqs 126 out of 1054
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 07:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r53_A Chorismate synthase; tw 100.0 4E-140 1E-144 1052.0 25.8 343 54-397 1-364 (382)
2 1um0_A Chorismate synthase; be 100.0 8E-138 3E-142 1027.7 32.0 331 54-397 1-349 (365)
3 1sq1_A Chorismate synthase; st 100.0 3E-138 9E-143 1033.2 27.6 334 54-397 1-346 (370)
4 4ecd_A Chorismate synthase; 4- 100.0 3E-136 1E-140 1028.8 27.0 345 59-403 3-379 (398)
5 1qxo_A Chorismate synthase; be 100.0 8E-135 3E-139 1015.9 29.1 341 61-403 1-371 (388)
6 2o11_A Chorismate synthase; sh 100.0 4E-134 1E-138 1014.7 27.9 342 60-403 1-375 (407)
7 1q1l_A Chorismate synthase; be 100.0 6E-133 2E-137 1004.9 30.0 339 59-403 7-384 (401)
8 2k1h_A Uncharacterized protein 83.8 0.46 1.6E-05 39.4 2.1 35 278-312 28-65 (94)
9 1pqx_A Conserved hypothetical 74.3 1.2 3.9E-05 36.8 1.5 36 278-313 28-66 (91)
10 2ltm_A NFU1 iron-sulfur cluste 73.2 0.89 3E-05 38.6 0.0 29 284-312 47-75 (107)
11 4ecd_A Chorismate synthase; 4- 68.0 8.3 0.00028 39.4 6.4 74 257-357 10-84 (398)
12 1q1l_A Chorismate synthase; be 65.4 2.8 9.7E-05 42.8 2.5 74 65-139 222-324 (401)
13 2o11_A Chorismate synthase; sh 65.3 2 6.7E-05 44.0 1.3 75 65-139 214-315 (407)
14 1sq1_A Chorismate synthase; st 61.2 7.3 0.00025 39.4 4.5 66 65-139 198-293 (370)
15 2ltl_A NIFU-like protein, mito 58.2 2.9 9.8E-05 36.1 0.0 29 285-313 60-89 (119)
16 1o4v_A Phosphoribosylaminoimid 37.9 42 0.0014 30.9 5.2 60 245-310 55-134 (183)
17 1qxo_A Chorismate synthase; be 33.0 18 0.0006 36.9 2.1 74 65-139 209-311 (388)
18 2zqe_A MUTS2 protein; alpha/be 29.1 1.8E+02 0.006 22.8 7.0 56 239-305 13-68 (83)
19 1r53_A Chorismate synthase; tw 28.8 29 0.00099 35.3 2.8 72 257-355 13-85 (382)
20 2d16_A Hypothetical protein PH 28.6 54 0.0018 29.7 4.2 45 58-104 113-160 (162)
21 1um0_A Chorismate synthase; be 28.2 28 0.00095 35.2 2.5 82 257-372 13-95 (365)
22 2ekm_A Hypothetical protein ST 27.8 55 0.0019 29.6 4.1 45 58-104 114-161 (162)
23 1rlh_A Conserved hypothetical 25.3 60 0.0021 29.6 3.9 35 58-93 125-160 (173)
24 3lp6_A Phosphoribosylaminoimid 23.6 1.1E+02 0.0039 27.8 5.5 63 245-310 49-128 (174)
No 1
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Probab=100.00 E-value=3.5e-140 Score=1052.01 Aligned_cols=343 Identities=52% Similarity=0.824 Sum_probs=251.5
Q ss_pred cccccCceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeeccCcEE
Q 015142 54 GSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIH 133 (412)
Q Consensus 54 ~ntfG~~frvttfGESHG~aiG~VIDG~PaGl~i~~ediq~~L~RRrpG~~~~tT~R~E~D~v~ilSGv~~G~TtGtPIa 133 (412)
+||||++|||||||||||++||||||||||||+||+||||.+|+||||||++++|||+|+|+|+||||||+|+||||||+
T Consensus 1 gntfG~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~ 80 (382)
T 1r53_A 1 MSTFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRPGQSKLSTPRDEKDRVEIQSGTEFGKTLGTPIA 80 (382)
T ss_dssp CCEECSSSEEEEECCTTSSEEEEEEECCCTTCBCCGGGTHHHHHTTCC------------CCCEECSSEETTEECSSCEE
T ss_pred CCcCcceeEEEecccCCCCeeEEEEecCCCCCccCHHHHHHHHHhhCCCCCCCCCCCCCCCeeEEeecccCCccCCCCeE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCccccccCCCCCccccccccccCCccCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeec
Q 015142 134 VFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHN 213 (412)
Q Consensus 134 ~~I~N~D~~s~DY~~l~~~pRPGHAD~t~~~KYg~~D~rGGGRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG~ 213 (412)
++|+|+||+|+||+++++.||||||||||++|||++||||||||||||||+||||||||||||++.+||+|.|||++||+
T Consensus 81 ~~I~N~D~~s~dy~~~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~RVAaGAiAk~~L~~~~GI~i~a~v~~iG~ 160 (382)
T 1r53_A 81 MMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGE 160 (382)
T ss_dssp EEEEC-----------------------------------------CCCHHHHHHHHHHHHHHHHTTCCEEEEEEEEETT
T ss_pred EEEecCCCCCCchhhccCCCCCCccchhhhhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999998679999999999999
Q ss_pred eecCCCCC------CcccccHHhhhcCC-CCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeecCCCCCCccccchHH
Q 015142 214 VVLPEDVV------DHEMLTLDQVESNI-VRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEA 286 (412)
Q Consensus 214 i~~~~~~~------~~~~~~~~~i~~~~-v~c~d~~~~~~m~~~I~~ar~~GDSlGGvve~v~~gvP~GLG~PvFdkLea 286 (412)
|+...... .....+|+++++|+ +||||++++++|+++|+++|++||||||+|||+++|||+|||+|+||||||
T Consensus 161 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pvfdkLda 240 (382)
T 1r53_A 161 IKMNRDSFDPEFQHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEA 240 (382)
T ss_dssp EECCCCTTCHHHHHHHHHCCHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHTTCCCCEEEEEEEESCCTTCSBTTTBCHHH
T ss_pred EecccccccccccccccccCHHHHhcCCCccCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCCcccccchH
Confidence 98642100 00234588999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcccEEEecccccccccCCCccccceeecCC--CceeecCCCcccccccccCCCceEEEEEEccCCccccc
Q 015142 287 ELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEF--GNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVS 364 (412)
Q Consensus 287 ~LA~almSIpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~--g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~ 364 (412)
+||+||||||||||||||+||++++|+|||+||+|+. ++ |+++|+|||+|||+|||||||||+||+||||||||.+|
T Consensus 241 ~LA~A~mSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~-~~~~g~~~~~TN~aGGI~GGISnG~pIv~r~a~KPt~SI~~~ 319 (382)
T 1r53_A 241 MLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYF-EKETNRLRTKTNNSGGVQGGISNGENIYFSVPFKSVATISQE 319 (382)
T ss_dssp HHHHHHHTSTTBCCCEETTTTGGGGSCHHHHHCSBC---------CBCCCCSCSEETTEECSSCEEEEEEECCC------
T ss_pred HHHHHhcCccceeEEEeccchhhhhccccccccceec-cccCCceeecCcCccCccccccCCCeEEEEEEECCccccccc
Confidence 9999999999999999999999999999999999973 33 57999999999999999999999999999999999999
Q ss_pred ccceeccCCc------ccccCchhh----HH--HHHHHHHHHHhh
Q 015142 365 LISLPLSIKT------NSHVGTTLP----IV--MYSLCFILLLWI 397 (412)
Q Consensus 365 q~TVdl~t~~------~~~~p~~~p----vV--~~~l~~~~~~~~ 397 (412)
|+|||+++++ ++||||++| || |+||+++|.+++
T Consensus 320 q~TVd~~~~~~~~~~~gRhDpCvvprA~pV~EAm~AlvLaD~~L~ 364 (382)
T 1r53_A 320 QKTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTALVLADALLI 364 (382)
T ss_dssp -----------------CCCSCHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCcchhhccCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 9999998764 567888874 56 899999998887
No 2
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A
Probab=100.00 E-value=7.8e-138 Score=1027.65 Aligned_cols=331 Identities=37% Similarity=0.578 Sum_probs=317.4
Q ss_pred cccccCceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeeccCcEE
Q 015142 54 GSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIH 133 (412)
Q Consensus 54 ~ntfG~~frvttfGESHG~aiG~VIDG~PaGl~i~~ediq~~L~RRrpG~~~~tT~R~E~D~v~ilSGv~~G~TtGtPIa 133 (412)
+||||++||+||||||||++||||||||||||+||++|||.+|+||||||++++|||+|+|+|+||||||+|+||||||+
T Consensus 1 gntfG~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~ 80 (365)
T 1um0_A 1 MNTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDDKVEITSGVFEDFSTGTPIG 80 (365)
T ss_dssp CCEECSSSEEEECCSCCSSEEEEEEECCCBTCBCCHHHHHHHHHHHTTCCSSCCCHHHHSCEEEECSSEETTEECSSCEE
T ss_pred CCcCcceeEEEeeccCCCCeeEEEEecCCCCCccCHHHHHHHHHhhCCCCCCCCCCCCCCCeeEEeecccCCccCCCCeE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCccccccCCCCCccccccccccCCccCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeec
Q 015142 134 VFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHN 213 (412)
Q Consensus 134 ~~I~N~D~~s~DY~~l~~~pRPGHAD~t~~~KYg~~D~rGGGRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG~ 213 (412)
++|+|+||+|+||+++++.||||||||||+.|||++||||||||||||||+||||||||||||++ +||+|.|||++||+
T Consensus 81 ~~I~N~d~~s~dy~~~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~rVAaGAiAk~~L~~-~gI~i~~~v~~iG~ 159 (365)
T 1um0_A 81 FLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIRDFRGGGRSSARESAIRVAAGAFAKMLLRE-IGIVCESGIIEIGG 159 (365)
T ss_dssp EEEECCCSCCCCCCCCTTBCCTTSTHHHHHHHHCCCCCCCTTCSTHHHHHHHHHHHHHHHHHHHH-TTEEEEEEEEEETT
T ss_pred EEEEcCCCCCCchhhccCCCCCCCcchhhHhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHH-CCcEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999998 59999999999999
Q ss_pred eecCCCCCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEee------cCCCCCCccccchHHH
Q 015142 214 VVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRN------CPRGLGSPVFDKLEAE 287 (412)
Q Consensus 214 i~~~~~~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ar~~GDSlGGvve~v~~g------vP~GLG~PvFdkLea~ 287 (412)
|+.. ..+|+++++|+++|||++++++|+++|+++|++||||||+|||+++| ||+|||+|+||||||+
T Consensus 160 i~~~-------~~~~~~~~~~~~~cpd~~~~~~m~~~I~~ak~~gDSiGGvve~v~~g~~~~~~vP~GLG~pvfdkLda~ 232 (365)
T 1um0_A 160 IKAK-------NYDFNHALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAKLDAK 232 (365)
T ss_dssp EECS-------SCCHHHHHHSTTCBSCHHHHHHHHHHHHHHHHTTCCBCEEEEEEEEESSTTCCCCSCCSBTTTBCHHHH
T ss_pred EecC-------cCCHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEcccccCcCCCCCCCcccccchHH
Confidence 9863 24488899999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhcCCCcccEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCCceEEEEEEccCCcccccccc
Q 015142 288 LAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVSLIS 367 (412)
Q Consensus 288 LA~almSIpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~T 367 (412)
||+||||||||||||||+||+++.|+|||+||+|+ + +| ++|||+|||+|||||||||+||+||||||||.+||+|
T Consensus 233 LA~A~msI~AvKGvEiG~GF~~a~~~GSe~nD~~~-~-~g---~~tN~aGGi~GGISnG~pIv~r~a~KPt~SI~~~q~T 307 (365)
T 1um0_A 233 IAEAMMGLNGVKAVEIGKGVESSLLKGSEYNDLMD-Q-KG---FLSNRSGGVLGGMSNGEEIIVRVHFKPTPSIFQPQRT 307 (365)
T ss_dssp HHHHHHTSTTEEEEEETTGGGGGGSBHHHHCCCEE-T-TE---ESCCTTTTEETTEECSSCEEEEEEECCCSCCSSCEEE
T ss_pred HHHHhcCccceeeEEeccchhhhhcccccccchhc-c-CC---CcccCccCccccccCCCcEEEEEEECCCccccccccc
Confidence 99999999999999999999999999999999997 3 34 4999999999999999999999999999999999999
Q ss_pred eeccCCc------ccccCchhh----HH--HHHHHHHHHHhh
Q 015142 368 LPLSIKT------NSHVGTTLP----IV--MYSLCFILLLWI 397 (412)
Q Consensus 368 Vdl~t~~------~~~~p~~~p----vV--~~~l~~~~~~~~ 397 (412)
||+++++ ++||||++| || |+||+++|.+++
T Consensus 308 Vd~~~~~~~~~~~gRhDpCvvprA~pV~EAm~AlvlaD~~L~ 349 (365)
T 1um0_A 308 IDINGNECECLLKGRHDPCIAIRGSVVCESLLALVLADMVLL 349 (365)
T ss_dssp EBTTSCEEEECCCSCCCSCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCEeeeccCCCCCcccccccHHHHHHHHHHHHHHHHHH
Confidence 9999864 568888885 55 999999998887
No 3
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=100.00 E-value=2.8e-138 Score=1033.23 Aligned_cols=334 Identities=39% Similarity=0.588 Sum_probs=253.3
Q ss_pred cccccCceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeeccCcEE
Q 015142 54 GSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIH 133 (412)
Q Consensus 54 ~ntfG~~frvttfGESHG~aiG~VIDG~PaGl~i~~ediq~~L~RRrpG~~~~tT~R~E~D~v~ilSGv~~G~TtGtPIa 133 (412)
+||||++|||||||||||++||||||||||||+||+||||.+|+||| ||++++|||+|+|+|+||||||+|+||||||+
T Consensus 1 gntfG~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~RRr-G~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~ 79 (370)
T 1sq1_A 1 MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKRK-GGSKFATPRKESDKAQVLSGVFEGYTTGHPIA 79 (370)
T ss_dssp CCEECSSSEEEEECCGGGSCEEEEEECCCSSCBCCHHHHHHHHHHTT-C-----------CCEEECSSEETTEECSSCEE
T ss_pred CCcCcceeEEEeeccCCCCeeEEEEecCCCCCccCHHHHHHHHHHhc-CCCCCCCCCCCCCeeEEeecccCCEeCCCCeE
Confidence 58999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEecCCCCCCCccccccCCCCCccccccccccCCccCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeec
Q 015142 134 VFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHN 213 (412)
Q Consensus 134 ~~I~N~D~~s~DY~~l~~~pRPGHAD~t~~~KYg~~D~rGGGRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG~ 213 (412)
++|+|+||+|+||+++++.||||||||||++|||++||||||||||||||+||||||||||||++ +||+|.|||++||+
T Consensus 80 ~~I~N~d~~s~dy~~~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~RVAaGAiAk~~L~~-~GI~i~a~v~~iG~ 158 (370)
T 1sq1_A 80 IVVFNENAHSKDYDNLKDLFRPAHADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLRE-FDICVQSGVFGVGT 158 (370)
T ss_dssp EEEC----------------------------------------CCCTHHHHHHHHHHHHHHHHT-TTCEEEEEEEEETT
T ss_pred EEEecCCCCCCchhhhcCCCCCCCcchhhhhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHH-CCcEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999998 79999999999999
Q ss_pred eecCCCCCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeecCCCCCCccccchHHHHHHHhc
Q 015142 214 VVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMM 293 (412)
Q Consensus 214 i~~~~~~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ar~~GDSlGGvve~v~~gvP~GLG~PvFdkLea~LA~alm 293 (412)
|+... +....+|+++++|+++|||++++++|+++|+++|++||||||+|||+++|||+|||+|+||||||+||+|||
T Consensus 159 i~~~~---~~~~~~~~~~~~~~~~cpd~~~~~~m~~~I~~~k~~gDS~GGvve~v~~gvP~GLG~pvfdkLda~LA~Alm 235 (370)
T 1sq1_A 159 FVSNL---KEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGLGEVLYDKLDSKLAHALM 235 (370)
T ss_dssp EECCS---CGGGSCHHHHHHSTTCBSCTTTHHHHHHHHHHHHHTTCCCCEEEEEEEESCCBSCSBTTTBCHHHHHHHHHH
T ss_pred EecCC---CcCccCHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEcCCCCCCCcccccchHHHHHHhc
Confidence 98642 123456889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCCceEEEEEEccCCcccccccceeccCC
Q 015142 294 SLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVSLISLPLSIK 373 (412)
Q Consensus 294 SIpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVdl~t~ 373 (412)
|||||||||||+||++++|+|||+||+| + +|++ +|||+|||+|||||||||+||+||||||||.+||+|||++++
T Consensus 236 SI~AvKGvEiG~GF~~a~~~GSe~nD~~--~-~g~~--~tN~aGGI~GGISnG~pIv~r~a~KPt~SI~~~q~TVd~~~~ 310 (370)
T 1sq1_A 236 GINAVKAVEIGEGINASKMRGSCNNDAL--K-DGKF--LSNHSGGILGGISNGENLILKTYFKPTPSIFAKQESIDKFGN 310 (370)
T ss_dssp TSTTEEEEEETTGGGGGGSCHHHHCCCC--S-SSSC--SCCTTCSEETTEEBSSCEEEEEEECCCC--------------
T ss_pred CccceeEEEeccchhhhhcccccccccc--c-CCcc--ccccCCCccccccCCCcEEEEEEecCCccccccccceecCCC
Confidence 9999999999999999999999999999 3 3554 999999999999999999999999999999999999999986
Q ss_pred c------ccccCchhh----HH--HHHHHHHHHHhh
Q 015142 374 T------NSHVGTTLP----IV--MYSLCFILLLWI 397 (412)
Q Consensus 374 ~------~~~~p~~~p----vV--~~~l~~~~~~~~ 397 (412)
+ ++||||++| || |+||+++|.+++
T Consensus 311 ~~~~~~~gRhDpCvvprA~pV~EAm~AlvLaD~~L~ 346 (370)
T 1sq1_A 311 NLKFELKGRHDPCVGVRGSVVASAMVRLVLADCLLL 346 (370)
T ss_dssp -------CCSCSCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeeccCCCCCceeecccHHHHHHHHHHHHHHHHHH
Confidence 4 567888874 55 889999988887
No 4
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp}
Probab=100.00 E-value=2.9e-136 Score=1028.76 Aligned_cols=345 Identities=33% Similarity=0.471 Sum_probs=236.7
Q ss_pred CceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeeccCcEEEEEec
Q 015142 59 TYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPN 138 (412)
Q Consensus 59 ~~frvttfGESHG~aiG~VIDG~PaGl~i~~ediq~~L~RRrpG~~~~tT~R~E~D~v~ilSGv~~G~TtGtPIa~~I~N 138 (412)
++||+||||||||++||||||||||||+||+||||.+|+||||||++++|||+|+|+|+||||||+|+||||||+++|+|
T Consensus 3 ~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~l~I~N 82 (398)
T 4ecd_A 3 AMLRWQTAGESHGEALVAMIEGLPAGVRISTDDIVSALARRRLGYGRGARMKFEQDKVRLLTGVRHGLTLGSPVAIEIAN 82 (398)
T ss_dssp CCCEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHTTCCCBCC------CCCEEEEESEETTEECSSCEEEEEEC
T ss_pred ceEEEEeeecCCCCeeEEEEccCCCCCccCHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEcccCCCcCCCCeEEEEEc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC---------CCcccc-------ccCCCCCccccccccccCCccCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCC
Q 015142 139 TDQRG---------HDYSEM-------SVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAG 201 (412)
Q Consensus 139 ~D~~s---------~DY~~l-------~~~pRPGHAD~t~~~KYg~~D~rGG-GRsSaReTa~rVaAGaIAk~~L~~~~G 201 (412)
+||+| .||+++ ++.||||||||||++|||++||||| |||||||||+||||||||||||++.+|
T Consensus 83 ~d~~~w~~~m~~~s~dy~~~~~~~~~~~~~pRPGHAD~t~~~KYG~~D~RgglgRsSaRETa~RVAaGAiAk~~L~~~~G 162 (398)
T 4ecd_A 83 TEWPKWTEVMSADALDHDLPREGRNAPLSRPRPGHADLTGMRKYGFDDARPVLERSSARETASRVALGEVAKQFLDQAFG 162 (398)
T ss_dssp ----------------------------------------------------------CCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCccchhhhccCCccChhhhhhhcccccCCCCCCccchhhhhhcCCccccCccccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99976 699998 7899999999999999999999999 999999999999999999999998459
Q ss_pred eEEEEEEEEeeceecCCCCCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeecCCCCCCccc
Q 015142 202 TEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVF 281 (412)
Q Consensus 202 I~I~s~v~~IG~i~~~~~~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ar~~GDSlGGvve~v~~gvP~GLG~PvF 281 (412)
|+|.|||++||+|+++....+....+++++++|+++|||++++++|+++|+++|++||||||+|||+|+|||+|||+|+|
T Consensus 163 I~i~s~v~~iG~i~~~~~~~~~~~~~~~~~~~~~~rc~d~~~~~~m~~~I~~ak~~gDS~GGvve~v~~gvP~GLG~pvf 242 (398)
T 4ecd_A 163 IRTVAHVVALGGVQTNPDLPLPTPDDLEALDASPVRTLDKEAEVRIIERINEAKKAADTLGGVIEVLAYGVPAGIGTYVE 242 (398)
T ss_dssp CEEEEEEEEETTEECCSSSCCCCGGGHHHHHHSTTSCSCHHHHHHHHHHHHTC--CGGGCCEEEEEEEESCCSCCBCSSS
T ss_pred eEEEEEEEEEcCEEcccccCCCCHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEEcCCCCCCCCcc
Confidence 99999999999999753222334567889999999999999999999999999999999999999999999999999999
Q ss_pred --cchHHHHHHHhcCCCcccEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCCceEEEEEEccCC
Q 015142 282 --DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTS 359 (412)
Q Consensus 282 --dkLea~LA~almSIpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtp 359 (412)
|||||+||+||||||||||||||+||+++.|+|||+||+|+++++|+++++|||+|||+|||||||||+||+||||||
T Consensus 243 ~d~kLda~LA~A~mSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~g~~~~~TN~aGGI~GGISnG~pIv~r~a~KPt~ 322 (398)
T 4ecd_A 243 SDRRLDAALASAIMGIQAFKGVEIGDGFLAASRPGSQAHDEIVVNADGRIDRLSNRAGGIEGGMSNGQVIRVRGAMKPIP 322 (398)
T ss_dssp STTSHHHHHHHHHHTSTTEEEEEETTTTTC-------------------------CCCSEETTEECSSCEEEEEEECC--
T ss_pred cccChhHHHHHHhcCcCceeeEEecchHhhhhccccccccceeecCCCceeecccCCcCccccccCCCcEEEEEEecCcc
Confidence 999999999999999999999999999999999999999997654569999999999999999999999999999999
Q ss_pred cccccccceeccCCc------ccccCchhh----HH--HHHHHHHHHHhh-hCCCce
Q 015142 360 TIGVSLISLPLSIKT------NSHVGTTLP----IV--MYSLCFILLLWI-CSKPSF 403 (412)
Q Consensus 360 SI~k~q~TVdl~t~~------~~~~p~~~p----vV--~~~l~~~~~~~~-c~~~~f 403 (412)
||.+||+|||++++| ++||||++| || |+||+++|.+++ +.+-++
T Consensus 323 SI~~~q~TVd~~~~e~~~~~~gRhDpCvvprA~pV~EAm~AlvLad~~L~~~g~d~~ 379 (398)
T 4ecd_A 323 SIPKALRTVDVLTGESAQAINQRSDSTAVPAASVVAEAMVRLTLAKYALDKFGGDSV 379 (398)
T ss_dssp -----------------------CCBCSHHHHHHHHHHHHHHHHHHHHHHHHCCSBH
T ss_pred cccccccceecCCCCeeeccCCCCCcccccchHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 999999999999875 557888774 55 999999999888 665554
No 5
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=100.00 E-value=7.7e-135 Score=1015.87 Aligned_cols=341 Identities=34% Similarity=0.467 Sum_probs=318.5
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeeccCcEEEEEecCC
Q 015142 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTD 140 (412)
Q Consensus 61 frvttfGESHG~aiG~VIDG~PaGl~i~~ediq~~L~RRrpG~~~~tT~R~E~D~v~ilSGv~~G~TtGtPIa~~I~N~D 140 (412)
||+||||||||++||||||||||||+||+||||.+|+||||||++++|||+|+|+|+||||||+|+||||||+++|+|+|
T Consensus 1 fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~~~I~N~d 80 (388)
T 1qxo_A 1 MRYLTAGESHGPRLTAIIEGIPAGLPLTAEDINEDLRRRQGGYGRGGRMKIENDQVVFTSGVRHGKTTGAPITMDVINKD 80 (388)
T ss_dssp CEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHHHCSTTCCTHHHHCCCCCEEEESEETTEECSSCEEEEEECGG
T ss_pred CeEeecccCCCCeeEEEEecCCCCCccCHHHHHHHHHhhCCCCCCCCcCCCCCCeeEEeecccCCccCCCCeEEEEecCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC---------CCCcc-cc---ccCCCCCccccccccccCCccCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCCeEEEE
Q 015142 141 QR---------GHDYS-EM---SVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEILA 206 (412)
Q Consensus 141 ~~---------s~DY~-~l---~~~pRPGHAD~t~~~KYg~~D~rGG-GRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s 206 (412)
|+ |+||+ ++ ++.||||||||||++|||++||||| |||||||||+||||||||||||++ +||+|.|
T Consensus 81 ~~~w~~~ms~~s~dy~~~~~~~~~~~RPGHAD~t~~~KYG~rD~RgglgRsSaRETa~RVAaGAiAk~~L~~-~GI~i~a 159 (388)
T 1qxo_A 81 HQKWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGGIKYRFDDLRNSLERSSARETTMRVAVGAVAKRLLAE-LDMEIAN 159 (388)
T ss_dssp GGGGTTTTCSSCCCGGGTTTTCCCSCCTTSSHHHHHHHHTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHH-TTCEEEE
T ss_pred hhhhhhhcccCCccchhhhhcccCCCCCCccchhhhhhcCCccccCccccchHHHHHHHHHHHHHHHHHHHh-CCcEEEE
Confidence 99 89999 55 6899999999999999999999999 999999999999999999999999 7999999
Q ss_pred EEEEeeceecCCCCCCccccc-HHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeecCCCCCCccc--cc
Q 015142 207 YVSQAHNVVLPEDVVDHEMLT-LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVF--DK 283 (412)
Q Consensus 207 ~v~~IG~i~~~~~~~~~~~~~-~~~i~~~~v~c~d~~~~~~m~~~I~~ar~~GDSlGGvve~v~~gvP~GLG~PvF--dk 283 (412)
||++||+|+.... ......+ ++++++|+|+|||++++++|+++|+++|++||||||+|||+|+|||+|||+|+| ||
T Consensus 160 ~v~~iG~i~~~~~-~~~~~~~~~~~~~~~~~~cpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pvf~d~k 238 (388)
T 1qxo_A 160 HVVVFGGKEIDVP-ENLTVAEIKQRAAQSEVSIVNQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSYVQWDRK 238 (388)
T ss_dssp EEEEETTEECCCC-SSCCHHHHHHHHHTSTTCCSCGGGHHHHHHHHHHHHHTTCCBCEEEEEEEESCCTTCSCSSSGGGC
T ss_pred EEEEEeCEEcCcc-cccchhhHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCcCCccccccc
Confidence 9999999996421 0011223 788999999999999999999999999999999999999999999999999999 99
Q ss_pred hHHHHHHHhcCCCcccEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCCceEEEEEEccCCcccc
Q 015142 284 LEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGV 363 (412)
Q Consensus 284 Lea~LA~almSIpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k 363 (412)
|||+||+||||||||||||||+||++++|+|||+||+|+++++++++++|||+|||+|||||||||+||+||||||||.+
T Consensus 239 Lda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~tN~aGGI~GGISnG~pIv~r~a~KPt~SI~~ 318 (388)
T 1qxo_A 239 LDARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTRRTNNLGGFEGGMTNGQPIVVRGVMKPIPTLYK 318 (388)
T ss_dssp HHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTSCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEECCCSCCSS
T ss_pred chHHHHHHhcCcCceeEEEECcchhhhhccccccccceeecCCCCeeecCcCccCcccccCCCCcEEEEEEeCCCccccc
Confidence 99999999999999999999999999999999999999876544699999999999999999999999999999999999
Q ss_pred cccceeccCCc------ccccCchhh----HH--HHHHHHHHHHhh-hCCCce
Q 015142 364 SLISLPLSIKT------NSHVGTTLP----IV--MYSLCFILLLWI-CSKPSF 403 (412)
Q Consensus 364 ~q~TVdl~t~~------~~~~p~~~p----vV--~~~l~~~~~~~~-c~~~~f 403 (412)
||+|||+++++ ++||||++| || |+||+++|.+++ +.+.++
T Consensus 319 ~q~TVd~~~~e~~~~~~gRhDpCvvprA~pV~EAm~AlvlaD~~L~~~~~d~~ 371 (388)
T 1qxo_A 319 PLMSVDIETHEPYKATVERSDPTALPAAGMVMEAVVATVLAQEILEKFSSDNL 371 (388)
T ss_dssp CEEEECTTTCCEEEECCSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHSCCSBH
T ss_pred cccceecCCCEeeeecCCCCCcccccchHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 99999999875 567888874 55 999999999988 555443
No 6
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Probab=100.00 E-value=4.1e-134 Score=1014.69 Aligned_cols=342 Identities=34% Similarity=0.486 Sum_probs=308.9
Q ss_pred ceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeeccCcEEEEEecC
Q 015142 60 YFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNT 139 (412)
Q Consensus 60 ~frvttfGESHG~aiG~VIDG~PaGl~i~~ediq~~L~RRrpG~~~~tT~R~E~D~v~ilSGv~~G~TtGtPIa~~I~N~ 139 (412)
+||+||||||||++||||||||||||+||+||||.+|+||||||++++|||+|+|+|+||||||+|+||||||+++|+|+
T Consensus 1 mfr~tT~GESHG~alg~VIdG~PaGl~l~~edIq~eL~RRrpG~~r~~t~R~E~D~v~IlSGV~~G~TtGtPI~~~I~N~ 80 (407)
T 2o11_A 1 MLRWITAGESHGRALVAVVEGMVAGVHVTSADIADQLARRRLGYGRGARMTFERDAVTVLSGIRHGSTLGGPIAIEIGNT 80 (407)
T ss_dssp CCEEEEECCTTSSEEEEEEESCCBTCBCCHHHHHHHHHHHTCCCC---------CCEEEEESEETTEECSSCEEEEEECT
T ss_pred CeEEEecccCCCCeeEEEEecCCCCCccCHHHHHHHHHhhCCCCCCCCCCCCCCCeeEEeecccCCccCCCCeEEEEecc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC------CC---Ccc----ccc----cCCCCCccccccccccCCccCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCC
Q 015142 140 DQR------GH---DYS----EMS----VAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAG 201 (412)
Q Consensus 140 D~~------s~---DY~----~l~----~~pRPGHAD~t~~~KYg~~D~rGG-GRsSaReTa~rVaAGaIAk~~L~~~~G 201 (412)
||+ |+ ||+ +++ +.||||||||||++|||++||||| |||||||||+||||||||||||++.+|
T Consensus 81 D~~~w~~~ms~~~~dy~~~~~~~~~~~~~~pRPGHAD~t~~~KYG~rD~RgglgRsSaRETa~RVAaGAiAk~~L~~~~G 160 (407)
T 2o11_A 81 EWPKWETVMAADPVDPAELADVARNAPLTRPRPGHADYAGMLKYGFDDARPVLERASARETAARVAAGTVARAFLRQALG 160 (407)
T ss_dssp THHHHTTTTCSSCCCHHHHHTCGGGCCCCSCCTTSSHHHHHHHHTCSSSHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred ChhhhhhcccccccCcchhhhhhhhcccCCCCCCccchhhHhhcCCcccCCccccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999 55 999 555 799999999999999999999999 999999999999999999999998569
Q ss_pred eEEEEEEEEeeceecCCCCCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeecCCCCCCcc-
Q 015142 202 TEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPV- 280 (412)
Q Consensus 202 I~I~s~v~~IG~i~~~~~~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ar~~GDSlGGvve~v~~gvP~GLG~Pv- 280 (412)
|+|.|||++||+|+...... ....+++++++|+|+|||++++++|+++|+++|++||||||+|||+|+|||+|||+|+
T Consensus 161 I~i~a~v~~iG~i~~~~~~~-~~~~~~~~~~~~~~rcpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pv~ 239 (407)
T 2o11_A 161 VEVLSHVISIGASAPYEGPP-PRAEDLPAIDASPVRAYDKAAEADMIAQIEAAKKDGDTLGGVVEAVALGLPVGLGSFTS 239 (407)
T ss_dssp CEEEEEEEEETTCCCCCSCC-CCGGGHHHHHHSTTCCSSHHHHHHHHHHHHHHHHHTCCCCEEEEEEEESCCTTCSCSSS
T ss_pred cEEEEEEEEEeCEEcccccc-cchhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEEecCCCCCCCCcc
Confidence 99999999999998642000 1234588899999999999999999999999999999999999999999999999999
Q ss_pred -ccchHHHHHHHhcCCCcccEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCCceEEEEEEccCC
Q 015142 281 -FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTS 359 (412)
Q Consensus 281 -FdkLea~LA~almSIpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtp 359 (412)
||||||+||+||||||||||||||+||++++++|||+||+|+++++| ++++|||+|||+|||||||||+||+||||||
T Consensus 240 ~f~kLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~g-~~~~TN~aGGI~GGISnG~pIv~r~a~KPt~ 318 (407)
T 2o11_A 240 GDHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDG-VVRSTNRAGGLEGGMTNGQPLRVRAAMKPIS 318 (407)
T ss_dssp GGGSHHHHHHHHHHTSTTEEEEEETTHHHHTTSCHHHHSCCCBCCTTS-CBCSCCTTTTEETTEECSSCEEEEEEECCCS
T ss_pred cccchhHHHHHHhcCcCceeeEEeccchhhhhccccccccceeecCCC-ceecCcCccCcccccCCCCcEEEEEEeCCCc
Confidence 99999999999999999999999999999999999999999875445 9999999999999999999999999999999
Q ss_pred cccccccceeccCCc------ccccCchhh----HH--HHHHHHHHHHhh-hCCCce
Q 015142 360 TIGVSLISLPLSIKT------NSHVGTTLP----IV--MYSLCFILLLWI-CSKPSF 403 (412)
Q Consensus 360 SI~k~q~TVdl~t~~------~~~~p~~~p----vV--~~~l~~~~~~~~-c~~~~f 403 (412)
||.+||+|||+++++ ++||||++| || |+||+++|.+++ +.+.|+
T Consensus 319 SI~~~q~TVd~~~~e~~~~~~gRhDpCvvprA~pV~EAm~AlvLaD~~L~~~~~d~~ 375 (407)
T 2o11_A 319 TVPRALATVDLATGDEAVAIHQRSDVCAVPAAGVVVETMVALVLARAALEKFGGDSL 375 (407)
T ss_dssp CCTTTCEEECTTTCCEEECCCSCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHCCSBH
T ss_pred cccccccceecCCCeeeeecCCCCCceeecchHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 999999999999875 567888874 55 999999999988 555444
No 7
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1
Probab=100.00 E-value=5.7e-133 Score=1004.89 Aligned_cols=339 Identities=36% Similarity=0.536 Sum_probs=278.2
Q ss_pred CceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeeccCcEEEEEec
Q 015142 59 TYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPN 138 (412)
Q Consensus 59 ~~frvttfGESHG~aiG~VIDG~PaGl~i~~ediq~~L~RRrpG~~~~tT~R~E~D~v~ilSGv~~G~TtGtPIa~~I~N 138 (412)
++|||||||||||++||||||||||||+||+||||.+|+||||||++++|||+|+|+|+||||||+|+||||||+++|+|
T Consensus 7 ~~fr~tT~GESHG~alg~vIdG~PaGl~l~~edIq~~L~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~~~I~N 86 (401)
T 1q1l_A 7 RYLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRRQRGYGRGGRMKIEKDTAEILSGVRFGKTLGSPIALFIRN 86 (401)
T ss_dssp SSCEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHHHTTCC------CCSCCEEEEESEETTEECSSCEEEEEEC
T ss_pred ceEEEEecccCCCCeeEEEEecCCCCCccCHHHHHHHHHhhCCCCCCCCCCCCCCCeeEEeecccCCccCCCCeEEEEec
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccC----------------CCCCccccccccccCCccCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCC
Q 015142 139 TDQRGHDYSEMSVA----------------YRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAG 201 (412)
Q Consensus 139 ~D~~s~DY~~l~~~----------------pRPGHAD~t~~~KYg~~D~rGG-GRsSaReTa~rVaAGaIAk~~L~~~~G 201 (412)
+| |+++++. ||||||||||++|||++||||| |||||||||+||||||||||||++ +|
T Consensus 87 ~D-----y~~~~~~m~~~~~~~~~~~~~t~pRPGHAD~t~~~KYG~rD~RgglgRsSaRETa~RVAaGAiAk~~L~~-~G 160 (401)
T 1q1l_A 87 RD-----WENWKEKMAIEGEPSPSVVPFTRPRPGHADLSGGIKYNQRDLRNILERASARETAARVAVGAVCKKFLSE-FG 160 (401)
T ss_dssp SC-----C-------------------------------CTTTTTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHT-TT
T ss_pred CC-----HHHHHhhccccccccccccccCCCCCCCcchhhhhhcCCccccCccccchHHHHHHHHHHHHHHHHHHHH-CC
Confidence 94 5555444 9999999999999999999999 999999999999999999999998 79
Q ss_pred eEEEEEEEEeeceecCCCC------CCccccc-HHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeecCC
Q 015142 202 TEILAYVSQAHNVVLPEDV------VDHEMLT-LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPR 274 (412)
Q Consensus 202 I~I~s~v~~IG~i~~~~~~------~~~~~~~-~~~i~~~~v~c~d~~~~~~m~~~I~~ar~~GDSlGGvve~v~~gvP~ 274 (412)
|+|.|||++||+|+..... .+....+ |+++++|+|+|||++++++|+++|+++|++||||||+|||+|+|||+
T Consensus 161 I~i~a~v~~iG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rcpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~ 240 (401)
T 1q1l_A 161 IKIGSFVVSIGQKEVEELKDKSYFANPEKLLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFALNVPP 240 (401)
T ss_dssp CEEEEEEEEETTEECGGGSSGGGGGCHHHHHHHHHHHTTSTTCCSCGGGHHHHHHHHHHHHTTTCCBCEEEEEEEESCCT
T ss_pred eEEEEEEEEEcCEEcccccccccccCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCC
Confidence 9999999999999863100 0001223 67899999999999999999999999999999999999999999999
Q ss_pred CCCCc-cccc-hHHHHHHHhcCCCcccEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCCceEEE
Q 015142 275 GLGSP-VFDK-LEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMR 352 (412)
Q Consensus 275 GLG~P-vFdk-Lea~LA~almSIpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~r 352 (412)
|||+| +||| |||+||+||||||||||||||+||++++++|||+||+|+++++++++|+|||+|||+|||||||||+||
T Consensus 241 GLG~pv~fdkrLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~TN~aGGI~GGISnG~pIv~r 320 (401)
T 1q1l_A 241 GLGSHIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFRHSNNLGGTEGGITNGMPIVVR 320 (401)
T ss_dssp TCSCSSSGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTCCCEEEETTTEEEESCCTTTTEETTEECSSCEEEE
T ss_pred CCCCcccccccchHHHHHHhcCcCceeEEEECcchhhhhccccccccceeecCCCCeeecCcCccCcccccCCCCcEEEE
Confidence 99999 7999 999999999999999999999999999999999999998765457999999999999999999999999
Q ss_pred EEEccCCcccccccceeccCCc------ccccCchhh----HH--HHHHHHHHHHhh-hCCCce
Q 015142 353 IAFKPTSTIGVSLISLPLSIKT------NSHVGTTLP----IV--MYSLCFILLLWI-CSKPSF 403 (412)
Q Consensus 353 va~KPtpSI~k~q~TVdl~t~~------~~~~p~~~p----vV--~~~l~~~~~~~~-c~~~~f 403 (412)
+||||||||.+||+|||+++++ ++||||++| || |+||+++|.+++ +.+.++
T Consensus 321 ~a~KPt~SI~~~q~TVd~~~~e~~~~~~gRhDpCvvprA~pV~EAm~AlvLaD~~L~~~~~d~~ 384 (401)
T 1q1l_A 321 VAMKPIPTLKNPLRSVDIETKEEMKAGKERTDIVAVPAASVVGEAMLAIVLADALLEKLGGDFM 384 (401)
T ss_dssp EEECCCCC------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCSBH
T ss_pred EEeCCCccccccccceecCCCeeeeecCCCCCcccccchHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 9999999999999999999875 567888874 55 999999999988 655544
No 8
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=83.82 E-value=0.46 Score=39.35 Aligned_cols=35 Identities=9% Similarity=0.087 Sum_probs=27.2
Q ss_pred Cccccch---HHHHHHHhcCCCcccEEEeccccccccc
Q 015142 278 SPVFDKL---EAELAKAMMSLPATKGFEVGSGFAGTFL 312 (412)
Q Consensus 278 ~PvFdkL---ea~LA~almSIpAvKGvEfG~GF~~a~~ 312 (412)
+-.|.+. .+-||+.||.||.||+|-||.-|=...+
T Consensus 28 s~~f~~~~a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK 65 (94)
T 2k1h_A 28 FTTYTAAQEGQPEFINRLFEIEGVKSIFYVLDFISIDK 65 (94)
T ss_dssp CCEECCCCTTSCHHHHHHHTSTTEEEEEEETTEEEEEE
T ss_pred ceecCCccccCCHHHHHhhCCCCeeEEEEeCCEEEEec
Confidence 3345444 4679999999999999999988866555
No 9
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=74.31 E-value=1.2 Score=36.77 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=28.0
Q ss_pred Cccccch---HHHHHHHhcCCCcccEEEecccccccccC
Q 015142 278 SPVFDKL---EAELAKAMMSLPATKGFEVGSGFAGTFLT 313 (412)
Q Consensus 278 ~PvFdkL---ea~LA~almSIpAvKGvEfG~GF~~a~~~ 313 (412)
+-.|.+. .+-||+.||.||.||+|-||.-|=...+.
T Consensus 28 s~~F~~~~a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~ 66 (91)
T 1pqx_A 28 SDTYTKVDDSQPAFINDILKVEGVKSIFHVMDFISVDKE 66 (91)
T ss_dssp CEEESSSCSSCCHHHHHHHHSTTEEEEEEETTEEEEEEC
T ss_pred ceEeCCccccCCHHHHHhhCCCCeeEEEEeCCEEEEecC
Confidence 3345443 47799999999999999999988666553
No 10
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=73.21 E-value=0.89 Score=38.57 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=24.9
Q ss_pred hHHHHHHHhcCCCcccEEEeccccccccc
Q 015142 284 LEAELAKAMMSLPATKGFEVGSGFAGTFL 312 (412)
Q Consensus 284 Lea~LA~almSIpAvKGvEfG~GF~~a~~ 312 (412)
..+-||+.||.||.||+|-||.-|=...+
T Consensus 47 ~~SPLA~~LF~i~gVk~Vf~g~dFITVtK 75 (107)
T 2ltm_A 47 FRSPLARQLFRIEGVKSVFFGPDSITVTK 75 (107)
Confidence 34779999999999999999998866655
No 11
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp}
Probab=67.96 E-value=8.3 Score=39.39 Aligned_cols=74 Identities=23% Similarity=0.449 Sum_probs=46.3
Q ss_pred cCCccccEEEEEEeecCCCCCCcc-ccchHHHHHHHhcCCCcccEEEecccccccccCCCccccceeecCCCceeecCCC
Q 015142 257 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 335 (412)
Q Consensus 257 ~GDSlGGvve~v~~gvP~GLG~Pv-FdkLea~LA~almSIpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~ 335 (412)
-|+|-|-.+-|++.|||+||= + .+.|+..|..---+ .| ..+.++ .-.|.. ..
T Consensus 10 ~GESHG~alg~vIdG~PaGl~--l~~~dIq~eL~RRrpG----------~~-r~~t~R--~E~D~v--------~I---- 62 (398)
T 4ecd_A 10 AGESHGEALVAMIEGLPAGVR--ISTDDIVSALARRRLG----------YG-RGARMK--FEQDKV--------RL---- 62 (398)
T ss_dssp ECCTTSSEEEEEEECCCBTCB--CCHHHHHHHHHHTTCC----------CB-CC--------CCCE--------EE----
T ss_pred eecCCCCeeEEEEccCCCCCc--cCHHHHHHHHHhcCCC----------CC-CCCCCC--CCCCce--------EE----
Confidence 589999999999999999985 4 45666666653211 01 011111 012332 22
Q ss_pred cccccccccCCCceEEEEEEcc
Q 015142 336 SGGIQGGISNGEIINMRIAFKP 357 (412)
Q Consensus 336 aGGI~GGISnG~pIv~rva~KP 357 (412)
-.|+.-|.|+|.||-+.+.=+=
T Consensus 63 lSGv~~G~TtGtPI~l~I~N~d 84 (398)
T 4ecd_A 63 LTGVRHGLTLGSPVAIEIANTE 84 (398)
T ss_dssp EESEETTEECSSCEEEEEEC--
T ss_pred EEcccCCCcCCCCeEEEEEcCC
Confidence 2689999999999999885443
No 12
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1
Probab=65.43 E-value=2.8 Score=42.80 Aligned_cols=74 Identities=24% Similarity=0.301 Sum_probs=48.1
Q ss_pred eeecccCCeeeEEeecCCCCccC--CHHH-HHHHhhh--------------------hCCCCCCCCCC-CCCCC-eEEE-
Q 015142 65 TFGESHGGGVGCIIDGCPPRIPL--SEAD-MQVDLDR--------------------RRPGQSRITTP-RKETD-TCKI- 118 (412)
Q Consensus 65 tfGESHG~aiG~VIDG~PaGl~i--~~ed-iq~~L~R--------------------RrpG~~~~tT~-R~E~D-~v~i- 118 (412)
--|.|-|..|-||+.|||+||== ..+. |+.+|.. +++|. ....+ ..+.+ .+..
T Consensus 222 ~~GDS~GGvvevv~~gvP~GLG~pv~fdkrLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GS-e~nD~~~~~~~~g~~~~ 300 (401)
T 1q1l_A 222 EKGESLGGVFEVFALNVPPGLGSHIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGS-QVHDEIGWSEGKGYFRH 300 (401)
T ss_dssp TTTCCBCEEEEEEEESCCTTCSCSSSGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGG-GTCCCEEEETTTEEEES
T ss_pred HhCCCCceEEEEEEecCCCCCCCcccccccchHHHHHHhcCcCceeEEEECcchhhhhcccc-ccccceeecCCCCeeec
Confidence 35999999999999999999953 3566 7776653 34452 11111 00111 2211
Q ss_pred ---EccccCCeeccCcEEEEEecC
Q 015142 119 ---YSGVSEGVTTGTPIHVFVPNT 139 (412)
Q Consensus 119 ---lSGv~~G~TtGtPIa~~I~N~ 139 (412)
-.||.-|.|+|.||-+-+-=+
T Consensus 301 TN~aGGI~GGISnG~pIv~r~a~K 324 (401)
T 1q1l_A 301 SNNLGGTEGGITNGMPIVVRVAMK 324 (401)
T ss_dssp CCTTTTEETTEECSSCEEEEEEEC
T ss_pred CcCccCcccccCCCCcEEEEEEeC
Confidence 247789999999999887433
No 13
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Probab=65.27 E-value=2 Score=44.04 Aligned_cols=75 Identities=23% Similarity=0.310 Sum_probs=47.4
Q ss_pred eeecccCCeeeEEeecCCCCccCCH---HHHHHHhhh--------------------hCCCCCCCCCCCCCCCeE----E
Q 015142 65 TFGESHGGGVGCIIDGCPPRIPLSE---ADMQVDLDR--------------------RRPGQSRITTPRKETDTC----K 117 (412)
Q Consensus 65 tfGESHG~aiG~VIDG~PaGl~i~~---ediq~~L~R--------------------RrpG~~~~tT~R~E~D~v----~ 117 (412)
--|.|-|..|-||+.|||+||==-. +.|+.+|.. +++|.---.-...+.+.+ .
T Consensus 214 ~~GDS~GGvvevv~~gvP~GLG~pv~~f~kLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~g~~~~TN 293 (407)
T 2o11_A 214 KDGDTLGGVVEAVALGLPVGLGSFTSGDHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDGVVRSTN 293 (407)
T ss_dssp HHTCCCCEEEEEEEESCCTTCSCSSSGGGSHHHHHHHHHHTSTTEEEEEETTHHHHTTSCHHHHSCCCBCCTTSCBCSCC
T ss_pred hcCCCCceEEEEEEecCCCCCCCCcccccchhHHHHHHhcCcCceeeEEeccchhhhhccccccccceeecCCCceecCc
Confidence 3599999999999999999995443 557776653 333310000000011111 1
Q ss_pred EEccccCCeeccCcEEEEEecC
Q 015142 118 IYSGVSEGVTTGTPIHVFVPNT 139 (412)
Q Consensus 118 ilSGv~~G~TtGtPIa~~I~N~ 139 (412)
--.||.-|.|+|.||-+-+-=+
T Consensus 294 ~aGGI~GGISnG~pIv~r~a~K 315 (407)
T 2o11_A 294 RAGGLEGGMTNGQPLRVRAAMK 315 (407)
T ss_dssp TTTTEETTEECSSCEEEEEEEC
T ss_pred CccCcccccCCCCcEEEEEEeC
Confidence 1368899999999999887433
No 14
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=61.22 E-value=7.3 Score=39.43 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=45.2
Q ss_pred eeecccCCeeeEEeecCCCCc--cCCHHHHHHHhhh--------------------hCCCC--------CCCCCCCCCCC
Q 015142 65 TFGESHGGGVGCIIDGCPPRI--PLSEADMQVDLDR--------------------RRPGQ--------SRITTPRKETD 114 (412)
Q Consensus 65 tfGESHG~aiG~VIDG~PaGl--~i~~ediq~~L~R--------------------RrpG~--------~~~tT~R~E~D 114 (412)
--|.|=|..|-||+.|||+|| ++ .+.++.+|.. +++|. +++.|.+
T Consensus 198 ~~gDS~GGvve~v~~gvP~GLG~pv-fdkLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~g~~~tN~---- 272 (370)
T 1sq1_A 198 NSKDSVGAAVFTKVSGMLIGLGEVL-YDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSCNNDALKDGKFLSNH---- 272 (370)
T ss_dssp HTTCCCCEEEEEEEESCCBSCSBTT-TBCHHHHHHHHHHTSTTEEEEEETTGGGGGGSCHHHHCCCCSSSSCSCCT----
T ss_pred HhCCCCeEEEEEEEEcCCCCCCCcc-cccchHHHHHHhcCccceeEEEeccchhhhhcccccccccccCCcccccc----
Confidence 349999999999999999999 44 3455555542 23331 1122222
Q ss_pred eEEEEccccCCeeccCcEEEEEecC
Q 015142 115 TCKIYSGVSEGVTTGTPIHVFVPNT 139 (412)
Q Consensus 115 ~v~ilSGv~~G~TtGtPIa~~I~N~ 139 (412)
-.||.-|.|+|.||-+-+-=+
T Consensus 273 ----aGGI~GGISnG~pIv~r~a~K 293 (370)
T 1sq1_A 273 ----SGGILGGISNGENLILKTYFK 293 (370)
T ss_dssp ----TCSEETTEEBSSCEEEEEEEC
T ss_pred ----CCCccccccCCCcEEEEEEec
Confidence 268899999999999987433
No 15
>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=58.23 E-value=2.9 Score=36.09 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=25.0
Q ss_pred HHHHHHHhc-CCCcccEEEecccccccccC
Q 015142 285 EAELAKAMM-SLPATKGFEVGSGFAGTFLT 313 (412)
Q Consensus 285 ea~LA~alm-SIpAvKGvEfG~GF~~a~~~ 313 (412)
.+-||++|| .|+.||+|-||.-|=...+.
T Consensus 60 ~SPLA~~LF~~i~GV~~Vf~g~DFITVtK~ 89 (119)
T 2ltl_A 60 HSKLAQQIFLQCPGVESLMIGDDFLTINKD 89 (119)
Confidence 466999999 99999999999988766663
No 16
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=37.92 E-value=42 Score=30.92 Aligned_cols=60 Identities=15% Similarity=0.239 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCccccEEEEE------------------EeecCCCCCCccccchHHHHHHHhc--CCCcccEEEec
Q 015142 245 EKMIAAIDAVRVRGDSVGGVVTCI------------------VRNCPRGLGSPVFDKLEAELAKAMM--SLPATKGFEVG 304 (412)
Q Consensus 245 ~~m~~~I~~ar~~GDSlGGvve~v------------------~~gvP~GLG~PvFdkLea~LA~alm--SIpAvKGvEfG 304 (412)
++|.++++++.++|-. +|-++ |-|||.-.| -|+.+++.|+-.=| ++| |-=|.|+
T Consensus 55 ~~l~~~~~~a~~~g~~---ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~--~l~G~dsLlSivqmP~Gvp-VatV~Id 128 (183)
T 1o4v_A 55 DRMFEYAKNAEERGIE---VIIAGAGGAAHLPGMVASITHLPVIGVPVKTS--TLNGLDSLFSIVQMPGGVP-VATVAIN 128 (183)
T ss_dssp HHHHHHHHHTTTTTCC---EEEEEEESSCCHHHHHHHHCSSCEEEEEECCT--TTTTHHHHHHHHTCCTTCC-CEECCTT
T ss_pred HHHHHHHHHHHhCCCc---EEEEecCcccccHHHHHhccCCCEEEeeCCCC--CCCcHHHHHHHhcCCCCCe-eEEEecC
Confidence 3466677777766654 22222 345665554 48899999999999 888 7777777
Q ss_pred cccccc
Q 015142 305 SGFAGT 310 (412)
Q Consensus 305 ~GF~~a 310 (412)
.||.++
T Consensus 129 ~~~nAa 134 (183)
T 1o4v_A 129 NAKNAG 134 (183)
T ss_dssp CHHHHH
T ss_pred CchHHH
Confidence 666554
No 17
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=32.96 E-value=18 Score=36.90 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=46.8
Q ss_pred eeecccCCeeeEEeecCCCCccCC--H-HHHHHHhhh--------------------hCCCCCCCCCC-C-CCCCeEEE-
Q 015142 65 TFGESHGGGVGCIIDGCPPRIPLS--E-ADMQVDLDR--------------------RRPGQSRITTP-R-KETDTCKI- 118 (412)
Q Consensus 65 tfGESHG~aiG~VIDG~PaGl~i~--~-ediq~~L~R--------------------RrpG~~~~tT~-R-~E~D~v~i- 118 (412)
--|.|-|..|-||+.|||+||==- . +.|+.+|.. +++|. ....+ . .+...+..
T Consensus 209 ~~GDS~GGvvevv~~gvP~GLG~pvf~d~kLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GS-e~nD~~~~~~~~g~~~~ 287 (388)
T 1qxo_A 209 RDGDTIGGVVETVVGGVPVGLGSYVQWDRKLDARLAQAVVSINAFKGVEFGLGFEAGYRKGS-QVMDEILWSKEDGYTRR 287 (388)
T ss_dssp HTTCCBCEEEEEEEESCCTTCSCSSSGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGG-GTSCCEEEETTTEEEES
T ss_pred HhCCCCceEEEEEEecCCCCcCCcccccccchHHHHHHhcCcCceeEEEECcchhhhhcccc-ccccceeecCCCCeeec
Confidence 349999999999999999998432 2 346666643 34452 11111 1 11112322
Q ss_pred ---EccccCCeeccCcEEEEEecC
Q 015142 119 ---YSGVSEGVTTGTPIHVFVPNT 139 (412)
Q Consensus 119 ---lSGv~~G~TtGtPIa~~I~N~ 139 (412)
-.||.-|.|+|.||-+-+-=+
T Consensus 288 tN~aGGI~GGISnG~pIv~r~a~K 311 (388)
T 1qxo_A 288 TNNLGGFEGGMTNGQPIVVRGVMK 311 (388)
T ss_dssp CCTTTTEETTEECSSCEEEEEEEC
T ss_pred CcCccCcccccCCCCcEEEEEEeC
Confidence 247789999999999887543
No 18
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=29.12 E-value=1.8e+02 Score=22.75 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHHHHcCCccccEEEEEEeecCCCCCCccccchHHHHHHHhcCCCcccEEEecc
Q 015142 239 PDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGS 305 (412)
Q Consensus 239 ~d~~~~~~m~~~I~~ar~~GDSlGGvve~v~~gvP~GLG~PvFdkLea~LA~almSIpAvKGvEfG~ 305 (412)
.-+|+.+++.+.|++|...|-+. | .++. |-|+ ..|...+-+.|-..|.|+.++.+.
T Consensus 13 ~~~eA~~~l~~fl~~a~~~g~~~---v-~IIH----GkG~---GvLr~~V~~~L~~~~~V~~f~~a~ 68 (83)
T 2zqe_A 13 TVAEALLEVDQALEEARALGLST---L-RLLH----GKGT---GALRQAIREALRRDKRVESFADAP 68 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSE---E-EEEC----CSTT---SHHHHHHHHHHHHCTTEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCE---E-EEEE----CCCc---hHHHHHHHHHHhcCCceeEEEEcC
Confidence 34778889999999999999762 3 3334 4454 379999999999999999999864
No 19
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Probab=28.79 E-value=29 Score=35.28 Aligned_cols=72 Identities=24% Similarity=0.333 Sum_probs=45.8
Q ss_pred cCCccccEEEEEEeecCCCCCCcc-ccchHHHHHHHhcCCCcccEEEecccccccccCCCccccceeecCCCceeecCCC
Q 015142 257 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 335 (412)
Q Consensus 257 ~GDSlGGvve~v~~gvP~GLG~Pv-FdkLea~LA~almSIpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~ 335 (412)
-|+|-|-.+-|++.|||+||= + .+-|+..|..--- |.+ ..+.++ .-.|+.. ..
T Consensus 13 ~GESHG~alg~vIdG~PaGl~--l~~~dIq~~L~RRrp----------G~~-r~~t~R--~E~D~v~--------Il--- 66 (382)
T 1r53_A 13 YGESHCKSVGCIVDGVPPGMS--LTEADIQPQLTRRRP----------GQS-KLSTPR--DEKDRVE--------IQ--- 66 (382)
T ss_dssp ECCTTSSEEEEEEECCCTTCB--CCGGGTHHHHHTTCC-------------------------CCCE--------EC---
T ss_pred cccCCCCeeEEEEecCCCCCc--cCHHHHHHHHHhhCC----------CCC-CCCCCC--CCCCeeE--------Ee---
Confidence 589999999999999999985 4 5677777765321 111 001111 0123332 22
Q ss_pred cccccccccCCCceEEEEEE
Q 015142 336 SGGIQGGISNGEIINMRIAF 355 (412)
Q Consensus 336 aGGI~GGISnG~pIv~rva~ 355 (412)
.|+.-|.|+|.||-+-+.=
T Consensus 67 -SGv~~G~TtGtPI~~~I~N 85 (382)
T 1r53_A 67 -SGTEFGKTLGTPIAMMIKN 85 (382)
T ss_dssp -SSEETTEECSSCEEEEEEC
T ss_pred -ecccCCccCCCCeEEEEec
Confidence 5888899999999987753
No 20
>2d16_A Hypothetical protein PH1918; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=28.60 E-value=54 Score=29.66 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=32.5
Q ss_pred cCceEEeeeecccCCeeeEEeecCCC-CccCCHHHHH--HHhhhhCCCCC
Q 015142 58 GTYFRVTTFGESHGGGVGCIIDGCPP-RIPLSEADMQ--VDLDRRRPGQS 104 (412)
Q Consensus 58 G~~frvttfGESHG~aiG~VIDG~Pa-Gl~i~~ediq--~~L~RRrpG~~ 104 (412)
-+-+++.++--..|.+|-+||||.+| |++ +++|++ ++|-|+ =||.
T Consensus 113 ANPl~VIVaet~~GrgvlGVvDG~~p~GVE-~e~d~~~Rk~lLr~-iGYK 160 (162)
T 2d16_A 113 ENPFQVIVAETELGRAVIGVVDGKAANKIE-TDEQKKERRELVEK-IGYK 160 (162)
T ss_dssp SSSEEEEEEECSSCEEEEEEEESSCCCSCC-CHHHHHHHHHHHHH-HTCC
T ss_pred CCCEEEEEEEcCCCcEEEEEecCCCCCCcc-CHHHHHHHHHHHHH-hCcC
Confidence 56789999878899999999999876 555 555554 244343 3764
No 21
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A
Probab=28.24 E-value=28 Score=35.23 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=52.8
Q ss_pred cCCccccEEEEEEeecCCCCCCcc-ccchHHHHHHHhcCCCcccEEEecccccccccCCCccccceeecCCCceeecCCC
Q 015142 257 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 335 (412)
Q Consensus 257 ~GDSlGGvve~v~~gvP~GLG~Pv-FdkLea~LA~almSIpAvKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~ 335 (412)
-|+|-|-.+-|++.|||+||= + .+-|+.+|..---+ .+- .+.++ .-.|+..+ .
T Consensus 13 ~GESHG~alg~vIdG~PaGl~--l~~~dIq~~L~RRrpG----------~~r-~~t~R--~E~D~v~I--------l--- 66 (365)
T 1um0_A 13 FGESHGDVIGGVLDGMPSGIK--IDYALLENEMKRRQGG----------RNV-FITPR--KEDDKVEI--------T--- 66 (365)
T ss_dssp CCSCCSSEEEEEEECCCBTCB--CCHHHHHHHHHHHTTC----------CSS-CCCHH--HHSCEEEE--------C---
T ss_pred eccCCCCeeEEEEecCCCCCc--cCHHHHHHHHHhhCCC----------CCC-CCCCC--CCCCeeEE--------e---
Confidence 489999999999999999985 4 46677777664321 110 01110 01233332 2
Q ss_pred cccccccccCCCceEEEEEEccCCcccccccceeccC
Q 015142 336 SGGIQGGISNGEIINMRIAFKPTSTIGVSLISLPLSI 372 (412)
Q Consensus 336 aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVdl~t 372 (412)
.|+.-|.|+|.||-+-+.= +.|++.|.+.
T Consensus 67 -SGv~~G~TtGtPI~~~I~N-------~d~~s~dy~~ 95 (365)
T 1um0_A 67 -SGVFEDFSTGTPIGFLIHN-------QRARSKDYDN 95 (365)
T ss_dssp -SSEETTEECSSCEEEEEEC-------CCSCCCCCCC
T ss_pred -ecccCCccCCCCeEEEEEc-------CCCCCCchhh
Confidence 5788899999999998763 3455556554
No 22
>2ekm_A Hypothetical protein ST1511; NPPSFA, national project on protein ST and functional analyses, riken structural genomics/proteomi initiative; 2.06A {Sulfolobus tokodaii}
Probab=27.83 E-value=55 Score=29.57 Aligned_cols=45 Identities=31% Similarity=0.476 Sum_probs=32.6
Q ss_pred cCceEEeeeecccCCeeeEEeecCCC-CccCCHHHHH--HHhhhhCCCCC
Q 015142 58 GTYFRVTTFGESHGGGVGCIIDGCPP-RIPLSEADMQ--VDLDRRRPGQS 104 (412)
Q Consensus 58 G~~frvttfGESHG~aiG~VIDG~Pa-Gl~i~~ediq--~~L~RRrpG~~ 104 (412)
-+-++|.++--..|.+|-+||||.+| |++ +++|++ ++|-|+ =||.
T Consensus 114 ANPl~VIvaet~~GrgvlGVvDG~~p~GVE-~e~d~~~Rk~lLr~-iGYK 161 (162)
T 2ekm_A 114 ANPLQVLVAETDQGRGVIGVVDGYTPLGIE-TEADIKERKELLRK-FGYK 161 (162)
T ss_dssp SSCEEEEEEECSSCEEEEEEEESCCCCEEC-CHHHHHHHHHHHHH-TTSC
T ss_pred CCCEEEEEEEcCCCcEEEEEecCCCCCCcc-CHHHHHHHHHHHHH-hCCC
Confidence 56789999878899999999999976 555 566654 344343 3763
No 23
>1rlh_A Conserved hypothetical protein; structural genomics, T. acidophilum, PSI, protein structure initiative; 1.80A {Thermoplasma acidophilum} SCOP: d.256.1.1
Probab=25.28 E-value=60 Score=29.57 Aligned_cols=35 Identities=26% Similarity=0.552 Sum_probs=25.2
Q ss_pred cCceEEeeeecccCCeeeEEeecCCC-CccCCHHHHH
Q 015142 58 GTYFRVTTFGESHGGGVGCIIDGCPP-RIPLSEADMQ 93 (412)
Q Consensus 58 G~~frvttfGESHG~aiG~VIDG~Pa-Gl~i~~ediq 93 (412)
-+-++|.++--..|.+|-+||||.+| |++= ++|++
T Consensus 125 ANPlqVIVaet~qGRgvlGVvDG~~P~GVE~-eed~~ 160 (173)
T 1rlh_A 125 ANPLQIIVYKGERGNGVLGVIDGYSPVGVES-DADIE 160 (173)
T ss_dssp SSCEEEEEEECSSSEEEEEEEESCCCCSCCC------
T ss_pred CCCEEEEEEEcCCCcEEEEEecCCCCCCccC-HHHHH
Confidence 56789999888899999999999876 6654 44544
No 24
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=23.56 E-value=1.1e+02 Score=27.77 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCcc---------------ccEEEEEEeecCCCCCCccccchHHHHHHHhcCCCc--ccEEEecccc
Q 015142 245 EKMIAAIDAVRVRGDSV---------------GGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPA--TKGFEVGSGF 307 (412)
Q Consensus 245 ~~m~~~I~~ar~~GDSl---------------GGvve~v~~gvP~GLG~PvFdkLea~LA~almSIpA--vKGvEfG~GF 307 (412)
++|.+++.++.++|-.+ .|...+=|-|||.-.|. ++.+++.|+-.-|- |+ |-=|.|+.||
T Consensus 49 ~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~--l~G~daLlS~vqmp-~GvpVatV~I~~~~ 125 (174)
T 3lp6_A 49 EAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGR--LDGLDSLLSIVQMP-AGVPVATVSIGGAG 125 (174)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHHCSSCEEEEEECCSS--GGGHHHHHHHHCCC-TTCCCEECCTTCHH
T ss_pred HHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhccCCCEEEeeCCCCC--CCCHHHHHHHhhCC-CCCeeEEEEcCcch
Confidence 45777888888877541 11112224466665552 78999999988774 33 3446666666
Q ss_pred ccc
Q 015142 308 AGT 310 (412)
Q Consensus 308 ~~a 310 (412)
.++
T Consensus 126 nAa 128 (174)
T 3lp6_A 126 NAG 128 (174)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
Done!