BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015143
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 107/267 (40%), Gaps = 30/267 (11%)
Query: 147 QYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPS 206
QYRG L ++R EG L+ G AGL + + + YD + + + ++
Sbjct: 46 QYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIG 105
Query: 207 ATPYVPLVAGSLARSLACATCYPIELARTRMQAFKGNQIGKKPPGVWQTLLGVLSHVKST 266
+ L+AGS +LA A P ++ + R QA G++ +Q S V++
Sbjct: 106 SR----LLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRR----YQ------STVEAY 151
Query: 267 NNIQKGFQGYRILWTGMGTQLARDVPFSAICWSTLEPMRRRLL--SFVGED--SNAASVL 322
I + +G R LW G +AR+ + T + ++ LL + + +D + S
Sbjct: 152 KTIARE-EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAF 210
Query: 323 GANFSXXXXXXXXXXXXTCPLDVAKTRRQIEKDPGRAMRMTTRQTLMEVWREAGIKGLFT 382
GA F P+DV KTR + + + + R+ G + +
Sbjct: 211 GAGFCTTVIAS--------PVDVVKTRYM---NSALGQYHSAGHCALTMLRKEGPRAFYK 259
Query: 383 GVGPRVARAGPSVGIVVSFYEVVKYVL 409
G P R G ++ YE +K L
Sbjct: 260 GFMPSFLRLGSWNVVMFVTYEQLKRAL 286
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 102/269 (37%), Gaps = 27/269 (10%)
Query: 147 QYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPS 206
QY+G +D +I +++GF WRG A + PT + D ++ D++
Sbjct: 49 QYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQF 108
Query: 207 ATPYV-PLVAGSLARSLACATCYPIELARTRMQAFKGNQIGKKPPGVWQTLLGVLSHVKS 265
+ L +G A + + YP++ ARTR+ A +GK T LG
Sbjct: 109 WRYFAGNLASGGAAGATSLCFVYPLDFARTRLAA----DVGKGAAQREFTGLG------- 157
Query: 266 TNNIQKGFQ--GYRILWTGMGTQLARDVPFSAICWSTLEPMRRRLLSFVGEDSNAASVLG 323
N I K F+ G R L+ G + + + A + + + L D ++
Sbjct: 158 -NCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML-----PDPKNVHII- 210
Query: 324 ANFSXXXXXXXXXXXXTCPLDVAKTRRQIEKDPGRAMRMTTRQTLMEVWR----EAGIKG 379
++ + P D RR++ GR ++ WR + G K
Sbjct: 211 VSWMIAQTVTAVAGLVSYPFDT--VRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKA 268
Query: 380 LFTGVGPRVARAGPSVGIVVSFYEVVKYV 408
F G V R ++V + E+ K+V
Sbjct: 269 FFKGAWSNVLRGMGGAFVLVLYDEIKKFV 297
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 10/178 (5%)
Query: 213 LVAGSLARSLACATCYPIELARTRMQAFKGNQIGKKPPGVWQTLLGVLSHVKSTNNIQKG 272
+AG +A +++ PIE + +Q Q K + G++ V Q
Sbjct: 11 FLAGGVAAAISKTAVAPIERVKLLLQV----QHASKQISAEKQYKGIIDCVVRIPKEQ-- 64
Query: 273 FQGYRILWTGMGTQLARDVPFSAICWSTLEPMRRRLLSFVGEDSNAASVLGANFSXXXXX 332
G+ W G + R P A+ ++ + ++ L V N +
Sbjct: 65 --GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAA 122
Query: 333 XXXXXXXTCPLDVAKTRRQIEKDPGRAMRMTT--RQTLMEVWREAGIKGLFTGVGPRV 388
PLD A+TR + G A R T + ++++ G++GL+ G V
Sbjct: 123 GATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSV 180
>pdb|1PYF|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
Akr11a(Apo)
pdb|1PZ0|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
Akr11a(Holo)
Length = 312
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 200 TDKNAPSATPYVPLVAGSLARSLACATCYPIELARTRMQAFKGNQI 245
T ++ S PY PLV+G LA T +P R + FKG +
Sbjct: 193 TKEHNISFIPYFPLVSGLLAGKYTEDTTFPEGDLRNEQEHFKGERF 238
>pdb|1N27|A Chain A, Solution Structure Of The Pwwp Domain Of Mouse Hepatoma-
Derived Growth Factor, Related Protein 3
Length = 96
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 133 GVHGTVSMCPPDCFQYRGTLDVFYKIIRQEGFSR-LWRGTNAG 174
G H T + P D F Y+ D F K +++GF+ LW N+G
Sbjct: 50 GTHETAFLGPKDLFPYKEYKDKFGKSNKRKGFNEGLWEIENSG 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,151,103
Number of Sequences: 62578
Number of extensions: 425643
Number of successful extensions: 755
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 12
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)