Query 015143
Match_columns 412
No_of_seqs 251 out of 2067
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 07:26:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 3.6E-54 1.2E-58 410.5 20.3 292 58-409 2-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 6E-54 2E-58 410.0 20.3 286 65-411 3-288 (303)
3 1okc_A ADP, ATP carrier protei 100.0 3.9E-34 1.3E-38 272.1 14.8 192 208-410 6-202 (297)
4 2lck_A Mitochondrial uncouplin 100.0 7.9E-34 2.7E-38 270.7 12.8 189 60-311 101-289 (303)
5 2bnk_A Early protein GP16.7; D 25.5 45 0.0015 22.1 2.3 45 339-384 21-65 (67)
6 4b19_A PEPA1; toxin, toxin apo 16.0 33 0.0011 19.5 0.1 22 324-345 5-26 (30)
7 3tgu_G UQCRQ, mitochondrial ub 14.3 41 0.0014 24.2 0.3 35 375-409 32-66 (81)
8 2acm_A Mucin-1; auto-catalytic 9.7 64 0.0022 21.5 0.0 20 149-168 40-59 (66)
9 3f2e_A SIRV coat protein; four 9.4 1.3E+02 0.0044 21.2 1.5 33 360-392 7-43 (100)
10 1pp9_G Ubiquinol-cytochrome C 9.4 68 0.0023 23.0 0.1 35 375-409 32-66 (81)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.6e-54 Score=410.47 Aligned_cols=292 Identities=21% Similarity=0.311 Sum_probs=243.0
Q ss_pred CCCCChHHHHHHhhhhhHHHHhhcCchhHHHHHHhhcccCCccCCCcchhhhhcccCCCcccccccccCCCCCCCCcccc
Q 015143 58 DGKLGLGERAFSAAGAAFLSAIIVNPLDVAKTRLQAQAAGVAYSHPLSNLISRMAYFGPRTMFADLRCSPSCTRAGVHGT 137 (412)
Q Consensus 58 ~~~~~~~~~~~ag~~a~~~~~~i~~Pld~iKt~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (412)
|+++++.+.+++|++||+++.++++|||+||||||++......
T Consensus 2 ~~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~------------------------------------- 44 (297)
T 1okc_A 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQI------------------------------------- 44 (297)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSC-------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccccc-------------------------------------
Confidence 3445678899999999999999999999999999998732100
Q ss_pred cCCCCCCCCcccChHHHHHHHHHhhCccccccCchHHHHHHhhhhhcchhhHHHHHHHhHhhhccCCC-CCCchhhhhhH
Q 015143 138 VSMCPPDCFQYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAP-SATPYVPLVAG 216 (412)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~ll~~~~~~~i~f~~y~~~k~~~~~~~~~~~~-~~~~~~~~~ag 216 (412)
.....|+++++++++|+++||++|||||+.+++++.++..+++|.+||.+++.+......... .......+++|
T Consensus 45 -----~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag 119 (297)
T 1okc_A 45 -----SAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASG 119 (297)
T ss_dssp -----CGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHH
T ss_pred -----ccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHH
Confidence 012368899999999999999999999999999999999999999999999965432211100 01235679999
Q ss_pred HHHHHHHHHhhchHHHHHHHHhcccCCC-CCCCCCchhhhHhhhhhhccccccccccccccchhhccchhhhhhhhhhhh
Q 015143 217 SLARSLACATCYPIELARTRMQAFKGNQ-IGKKPPGVWQTLLGVLSHVKSTNNIQKGFQGYRILWTGMGTQLARDVPFSA 295 (412)
Q Consensus 217 ~~Ag~~~~~v~~Pld~iktr~q~~~~~~-~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~G~~gly~G~~~~l~r~~~~~~ 295 (412)
++||+++.++++|+|+||+|||++.... ....|++.++++++|+++| |+++||||+.|.+++.+|+.+
T Consensus 120 ~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~e-----------G~~glyrG~~~~l~~~~~~~~ 188 (297)
T 1okc_A 120 GAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSD-----------GLRGLYQGFNVSVQGIIIYRA 188 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHH-----------CHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhc-----------cHHHhcCCchHHHHHHHHHHH
Confidence 9999999999999999999999975422 1346899999999999998 999999999999999999999
Q ss_pred hHHHhHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHhhhhhhchHHHHHHHhhhccCC--CCCCCCcHHHHHHHHHH
Q 015143 296 ICWSTLEPMRRRLLSFVGEDSNAASVLGANFSAAFVAGSLAAAATCPLDVAKTRRQIEKDP--GRAMRMTTRQTLMEVWR 373 (412)
Q Consensus 296 i~f~~ye~lk~~l~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~Pldviktr~q~~~~~--~~~~y~~~~~~~~~i~~ 373 (412)
++|.+||.+|+.+.+.. .......+++|++||++++++++|+||||+|||.+... ....|.++++|+++|++
T Consensus 189 ~~f~~ye~~k~~~~~~~------~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~ 262 (297)
T 1okc_A 189 AYFGVYDTAKGMLPDPK------NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAK 262 (297)
T ss_dssp HHHHHHHHHHHSSCGGG------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC------CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Confidence 99999999999764321 11234478899999999999999999999999997542 23468999999999999
Q ss_pred HhCcchhccchhHHHhhhcccceeeHHHHHHHHHHh
Q 015143 374 EAGIKGLFTGVGPRVARAGPSVGIVVSFYEVVKYVL 409 (412)
Q Consensus 374 ~eG~~glyrG~~~~~~r~~p~~~i~~~~ye~~k~~l 409 (412)
+||++|||||+.|+++|. +..++.|.+||.+|+.+
T Consensus 263 ~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 263 DEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 999999999999999995 57899999999998764
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6e-54 Score=409.99 Aligned_cols=286 Identities=26% Similarity=0.355 Sum_probs=248.1
Q ss_pred HHHHHhhhhhHHHHhhcCchhHHHHHHhhcccCCccCCCcchhhhhcccCCCcccccccccCCCCCCCCcccccCCCCCC
Q 015143 65 ERAFSAAGAAFLSAIIVNPLDVAKTRLQAQAAGVAYSHPLSNLISRMAYFGPRTMFADLRCSPSCTRAGVHGTVSMCPPD 144 (412)
Q Consensus 65 ~~~~ag~~a~~~~~~i~~Pld~iKt~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (412)
..+++|++||+++.++++|||+||+|||++....... ....
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~---------------------------------------~~~~ 43 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLV---------------------------------------RTAA 43 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHH---------------------------------------HHCS
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhcccccc---------------------------------------cccc
Confidence 3689999999999999999999999999987321000 0000
Q ss_pred CCcccChHHHHHHHHHhhCccccccCchHHHHHHhhhhhcchhhHHHHHHHhHhhhccCCCCCCchhhhhhHHHHHHHHH
Q 015143 145 CFQYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPSATPYVPLVAGSLARSLAC 224 (412)
Q Consensus 145 ~~~~~~~~~~~~~i~~~eG~~glyrG~~~~ll~~~~~~~i~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~ag~~Ag~~~~ 224 (412)
..+|+++++++++|+++||+++||||+.+++++.++..+++|.+||.+|+.+.+... .......+++|++||+++.
T Consensus 44 ~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~----~~~~~~~~~ag~~ag~~~~ 119 (303)
T 2lck_A 44 SAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE----HAGIGSRLLAGSTTGALAV 119 (303)
T ss_dssp CSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCS----SCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----CCcHHHHHHHHHHHHHHHH
Confidence 236889999999999999999999999999999999999999999999998864311 2456788999999999999
Q ss_pred HhhchHHHHHHHHhcccCCCCCCCCCchhhhHhhhhhhccccccccccccccchhhccchhhhhhhhhhhhhHHHhHHHH
Q 015143 225 ATCYPIELARTRMQAFKGNQIGKKPPGVWQTLLGVLSHVKSTNNIQKGFQGYRILWTGMGTQLARDVPFSAICWSTLEPM 304 (412)
Q Consensus 225 ~v~~Pld~iktr~q~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~G~~gly~G~~~~l~r~~~~~~i~f~~ye~l 304 (412)
++++|+|+||+|||.+........|++.++++++|+++| |+++||||+.|.+++.+|+.+++|.+||.+
T Consensus 120 ~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~e-----------G~~glyrG~~~~l~~~~~~~~i~f~~ye~~ 188 (303)
T 2lck_A 120 AVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREE-----------GIRGLWKGTSPNVARNAIVNCAELVTYDLI 188 (303)
T ss_dssp HHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHH-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhc-----------ChhhhhCCccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999865333347899999999999998 999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCcchhhhhHHHHHHHHHHhhhhhhchHHHHHHHhhhccCCCCCCCCcHHHHHHHHHHHhCcchhccch
Q 015143 305 RRRLLSFVGEDSNAASVLGANFSAAFVAGSLAAAATCPLDVAKTRRQIEKDPGRAMRMTTRQTLMEVWREAGIKGLFTGV 384 (412)
Q Consensus 305 k~~l~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~Pldviktr~q~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~ 384 (412)
|+.+.+.... .......+++|++||++++++++|+||||+|||.+... .|.++++|+++|+++||++|||||+
T Consensus 189 k~~l~~~~~~----~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~---~y~~~~~~~~~i~~~eG~~glyrG~ 261 (303)
T 2lck_A 189 KDTLLKANLM----TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALG---QYHSAGHCALTMLRKEGPRAFYKGF 261 (303)
T ss_dssp HHTTTTTTSC----CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS---SCCSHHHHHHHHHHSSCTHHHHSCC
T ss_pred HHHHHhccCC----CCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcccc---ccCCHHHHHHHHHHHcChHHhhccH
Confidence 9988653221 12334489999999999999999999999999998642 4889999999999999999999999
Q ss_pred hHHHhhhcccceeeHHHHHHHHHHhhc
Q 015143 385 GPRVARAGPSVGIVVSFYEVVKYVLHN 411 (412)
Q Consensus 385 ~~~~~r~~p~~~i~~~~ye~~k~~l~~ 411 (412)
.|+++|.+|..++.|.+||.+|+.+.+
T Consensus 262 ~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 262 MPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987653
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.9e-34 Score=272.11 Aligned_cols=192 Identities=18% Similarity=0.285 Sum_probs=165.3
Q ss_pred CchhhhhhHHHHHHHHHHhhchHHHHHHHHhcccCCC---CCCCCCchhhhHhhhhhhccccccccccccccchhhccch
Q 015143 208 TPYVPLVAGSLARSLACATCYPIELARTRMQAFKGNQ---IGKKPPGVWQTLLGVLSHVKSTNNIQKGFQGYRILWTGMG 284 (412)
Q Consensus 208 ~~~~~~~ag~~Ag~~~~~v~~Pld~iktr~q~~~~~~---~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~G~~gly~G~~ 284 (412)
+.+..+++|++||+++.++++|+|+||+|||.+.... ....|++.++++++++++| |+++||||+.
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~e-----------G~~glyrG~~ 74 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ-----------GFLSFWRGNL 74 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHH-----------CGGGGGTTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhcc-----------chhheecccH
Confidence 3456799999999999999999999999999986421 1236899999999999998 9999999999
Q ss_pred hhhhhhhhhhhhHHHhHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHhhhhhhchHHHHHHHhhhccCC--CCCCCC
Q 015143 285 TQLARDVPFSAICWSTLEPMRRRLLSFVGEDSNAASVLGANFSAAFVAGSLAAAATCPLDVAKTRRQIEKDP--GRAMRM 362 (412)
Q Consensus 285 ~~l~r~~~~~~i~f~~ye~lk~~l~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~Pldviktr~q~~~~~--~~~~y~ 362 (412)
+.+++.+|+.+++|.+||.+|+.+......+..........+++|++||+++.++++|+|+||+|||++... ....|.
T Consensus 75 ~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~ 154 (297)
T 1okc_A 75 ANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFT 154 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCC
Confidence 999999999999999999999965433222222222344589999999999999999999999999998532 234689
Q ss_pred cHHHHHHHHHHHhCcchhccchhHHHhhhcccceeeHHHHHHHHHHhh
Q 015143 363 TTRQTLMEVWREAGIKGLFTGVGPRVARAGPSVGIVVSFYEVVKYVLH 410 (412)
Q Consensus 363 ~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~~~~ye~~k~~l~ 410 (412)
++++|+++|+++||++|||||+.++++|.+|..++.|.+||.+|+.+.
T Consensus 155 ~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 202 (297)
T 1okc_A 155 GLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202 (297)
T ss_dssp SHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999764
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=7.9e-34 Score=270.71 Aligned_cols=189 Identities=23% Similarity=0.333 Sum_probs=168.5
Q ss_pred CCChHHHHHHhhhhhHHHHhhcCchhHHHHHHhhcccCCccCCCcchhhhhcccCCCcccccccccCCCCCCCCcccccC
Q 015143 60 KLGLGERAFSAAGAAFLSAIIVNPLDVAKTRLQAQAAGVAYSHPLSNLISRMAYFGPRTMFADLRCSPSCTRAGVHGTVS 139 (412)
Q Consensus 60 ~~~~~~~~~ag~~a~~~~~~i~~Pld~iKt~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (412)
..+....+++|++||+++.++++|+|+||+|||++....
T Consensus 101 ~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~----------------------------------------- 139 (303)
T 2lck_A 101 HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG----------------------------------------- 139 (303)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCC-----------------------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccC-----------------------------------------
Confidence 367889999999999999999999999999999986210
Q ss_pred CCCCCCCcccChHHHHHHHHHhhCccccccCchHHHHHHhhhhhcchhhHHHHHHHhHhhhccCCCCCCchhhhhhHHHH
Q 015143 140 MCPPDCFQYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPSATPYVPLVAGSLA 219 (412)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~ll~~~~~~~i~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~ag~~A 219 (412)
....|+++++++++|+++||++|||||+.+++++.++..+++|.+||.+|+.+.+... ...+....+++|++|
T Consensus 140 ----~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~---~~~~~~~~~~~g~~a 212 (303)
T 2lck_A 140 ----GGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL---MTDDLPCHFTSAFGA 212 (303)
T ss_dssp ----CSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS---CCSCHHHHHHHHHHH
T ss_pred ----CCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCCchHHHHHHHHHH
Confidence 1236889999999999999999999999999999999999999999999998865432 123566789999999
Q ss_pred HHHHHHhhchHHHHHHHHhcccCCCCCCCCCchhhhHhhhhhhccccccccccccccchhhccchhhhhhhhhhhhhHHH
Q 015143 220 RSLACATCYPIELARTRMQAFKGNQIGKKPPGVWQTLLGVLSHVKSTNNIQKGFQGYRILWTGMGTQLARDVPFSAICWS 299 (412)
Q Consensus 220 g~~~~~v~~Pld~iktr~q~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~G~~gly~G~~~~l~r~~~~~~i~f~ 299 (412)
|++++++++|+|+||+|||.+... .|++.++++++|+++| |++|||||+.|+++|.+|..+++|.
T Consensus 213 g~~~~~~~~P~dvvktrlq~~~~~----~y~~~~~~~~~i~~~e-----------G~~glyrG~~~~~~r~~p~~~i~f~ 277 (303)
T 2lck_A 213 GFCTTVIASPVDVVKTRYMNSALG----QYHSAGHCALTMLRKE-----------GPRAFYKGFMPSFLRLGSWNVVMFV 277 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSS----SCCSHHHHHHHHHHSS-----------CTHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHhcccc----ccCCHHHHHHHHHHHc-----------ChHHhhccHHHHHHHHHhHHHHHHH
Confidence 999999999999999999997642 6899999999999998 9999999999999999999999999
Q ss_pred hHHHHHHHHhhh
Q 015143 300 TLEPMRRRLLSF 311 (412)
Q Consensus 300 ~ye~lk~~l~~~ 311 (412)
+||.+|+.+.+.
T Consensus 278 ~ye~~k~~l~~~ 289 (303)
T 2lck_A 278 TYEQLKRALMAA 289 (303)
T ss_dssp HHHHHHSCCCCH
T ss_pred HHHHHHHHHHHh
Confidence 999999877543
No 5
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=25.46 E-value=45 Score=22.12 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=31.2
Q ss_pred hhchHHHHHHHhhhccCCCCCCCCcHHHHHHHHHHHhCcchhccch
Q 015143 339 ATCPLDVAKTRRQIEKDPGRAMRMTTRQTLMEVWREAGIKGLFTGV 384 (412)
Q Consensus 339 ~t~Pldviktr~q~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~ 384 (412)
+--|+|+|.-.. .++......-+++...-+.-|+-|.-+-+|||.
T Consensus 21 IrIP~DIIEdl~-~~~L~te~EVmnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 21 IRIPSDIIEDLV-NQRLQSEQEVLNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp CCCCHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHHHTTSCCCCSC
T ss_pred CcCcHHHHHHHH-HHhhhhHHHHHHHHHhhHhHHhhhhhHHHHhcc
Confidence 345888886544 333333333367777888889999999999995
No 6
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=15.98 E-value=33 Score=19.54 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHhhhhhhchHHH
Q 015143 324 ANFSAAFVAGSLAAAATCPLDV 345 (412)
Q Consensus 324 ~~~~~g~~ag~~a~~~t~Pldv 345 (412)
+++++-+++|++.++++|-|+.
T Consensus 5 v~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 5 VHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp TSSTTTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 3666778899999999988763
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=14.30 E-value=41 Score=24.18 Aligned_cols=35 Identities=9% Similarity=0.121 Sum_probs=28.6
Q ss_pred hCcchhccchhHHHhhhcccceeeHHHHHHHHHHh
Q 015143 375 AGIKGLFTGVGPRVARAGPSVGIVVSFYEVVKYVL 409 (412)
Q Consensus 375 eG~~glyrG~~~~~~r~~p~~~i~~~~ye~~k~~l 409 (412)
.|+.+.+|-+.-.+++++|...+.+.+|++.++..
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 46666777777788999999999999999987654
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=9.74 E-value=64 Score=21.54 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=16.6
Q ss_pred cChHHHHHHHHHhhCccccc
Q 015143 149 RGTLDVFYKIIRQEGFSRLW 168 (412)
Q Consensus 149 ~~~~~~~~~i~~~eG~~gly 168 (412)
+++...+..||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 45778888999999998875
No 9
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=9.41 E-value=1.3e+02 Score=21.20 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=23.8
Q ss_pred CCCcHHHHHHHHHHHhCc----chhccchhHHHhhhc
Q 015143 360 MRMTTRQTLMEVWREAGI----KGLFTGVGPRVARAG 392 (412)
Q Consensus 360 ~y~~~~~~~~~i~~~eG~----~glyrG~~~~~~r~~ 392 (412)
.+.+.-+-+..++.+-|+ +++|.|++..+.|..
T Consensus 7 kftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 7 KFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp -CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 355666667777888886 669999998877654
No 10
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=9.35 E-value=68 Score=23.00 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=29.4
Q ss_pred hCcchhccchhHHHhhhcccceeeHHHHHHHHHHh
Q 015143 375 AGIKGLFTGVGPRVARAGPSVGIVVSFYEVVKYVL 409 (412)
Q Consensus 375 eG~~glyrG~~~~~~r~~p~~~i~~~~ye~~k~~l 409 (412)
.|+.+.+|-+.-.++.++|...+.+.+|+..++..
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 57777788888888899999999999999987654
Done!