Query 015145
Match_columns 412
No_of_seqs 138 out of 1215
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:32:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05486 Cathespin_E Cathepsin 100.0 8.9E-56 1.9E-60 438.6 33.1 306 2-410 7-316 (316)
2 cd05490 Cathepsin_D2 Cathepsin 100.0 2.2E-55 4.7E-60 437.2 34.8 307 2-410 13-325 (325)
3 cd05487 renin_like Renin stimu 100.0 2.1E-54 4.6E-59 430.7 36.0 306 2-411 15-326 (326)
4 cd06098 phytepsin Phytepsin, a 100.0 2.6E-54 5.6E-59 428.7 32.5 296 2-410 17-317 (317)
5 cd05477 gastricsin Gastricsins 100.0 2E-53 4.3E-58 421.9 35.1 304 2-411 10-318 (318)
6 PTZ00165 aspartyl protease; Pr 100.0 1.1E-53 2.3E-58 445.8 34.1 300 2-412 127-447 (482)
7 cd05485 Cathepsin_D_like Cathe 100.0 3.4E-53 7.3E-58 423.0 34.5 306 2-410 18-329 (329)
8 cd05478 pepsin_A Pepsin A, asp 100.0 5.3E-53 1.1E-57 418.9 33.7 297 2-410 17-317 (317)
9 cd05488 Proteinase_A_fungi Fun 100.0 3.8E-52 8.2E-57 413.5 34.0 300 2-410 17-320 (320)
10 PTZ00147 plasmepsin-1; Provisi 100.0 2.6E-50 5.6E-55 417.5 35.3 299 2-412 146-450 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 9E-50 1.9E-54 412.9 34.5 299 2-412 145-449 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 1.3E-50 2.7E-55 397.9 25.8 304 2-411 8-317 (317)
13 cd06097 Aspergillopepsin_like 100.0 1.2E-45 2.6E-50 359.7 29.0 262 2-410 7-278 (278)
14 cd05473 beta_secretase_like Be 100.0 1.4E-45 3E-50 372.8 30.3 309 2-412 10-346 (364)
15 cd05474 SAP_like SAPs, pepsin- 100.0 7E-45 1.5E-49 355.5 29.8 271 2-411 9-295 (295)
16 cd06096 Plasmepsin_5 Plasmepsi 100.0 4.1E-43 8.9E-48 349.8 26.7 272 2-411 10-323 (326)
17 cd05472 cnd41_like Chloroplast 100.0 3.5E-42 7.5E-47 338.4 27.0 280 2-411 8-297 (299)
18 KOG1339 Aspartyl protease [Pos 100.0 5E-42 1.1E-46 351.2 28.7 299 2-411 53-392 (398)
19 cd05471 pepsin_like Pepsin-lik 100.0 2.6E-40 5.7E-45 318.9 31.9 269 2-410 7-283 (283)
20 cd05476 pepsin_A_like_plant Ch 100.0 3E-40 6.4E-45 319.8 25.4 241 2-412 8-264 (265)
21 cd05475 nucellin_like Nucellin 100.0 2.7E-39 5.9E-44 314.7 27.0 251 2-412 9-272 (273)
22 PLN03146 aspartyl protease fam 100.0 2.2E-38 4.8E-43 327.5 28.5 292 2-411 91-426 (431)
23 cd05489 xylanase_inhibitor_I_l 100.0 8.8E-37 1.9E-41 309.1 25.6 308 3-411 3-361 (362)
24 PF14541 TAXi_C: Xylanase inhi 99.7 2.4E-16 5.2E-21 142.1 12.4 153 169-410 1-161 (161)
25 cd05470 pepsin_retropepsin_lik 99.7 5.4E-16 1.2E-20 130.0 11.0 100 2-101 5-109 (109)
26 PF14543 TAXi_N: Xylanase inhi 99.6 2.4E-15 5.2E-20 136.4 14.1 130 2-149 7-164 (164)
27 PF05184 SapB_1: Saposin-like 98.2 1.8E-06 3.9E-11 59.4 3.3 38 284-321 2-39 (39)
28 PF03489 SapB_2: Saposin-like 98.0 2.2E-06 4.7E-11 57.8 1.3 35 223-257 1-35 (35)
29 KOG1340 Prosaposin [Lipid tran 97.0 0.00097 2.1E-08 63.2 4.8 104 208-322 63-167 (218)
30 smart00741 SapB Saposin (B) Do 95.7 0.0084 1.8E-07 45.9 2.6 49 207-257 28-76 (76)
31 smart00741 SapB Saposin (B) Do 94.7 0.03 6.5E-07 42.8 3.1 37 285-321 2-38 (76)
32 cd05483 retropepsin_like_bacte 94.0 0.12 2.7E-06 41.1 5.4 81 6-103 11-94 (96)
33 cd05479 RP_DDI RP_DDI; retrope 91.8 0.82 1.8E-05 39.3 7.6 25 383-407 99-123 (124)
34 TIGR02281 clan_AA_DTGA clan AA 91.1 2.1 4.6E-05 36.7 9.5 38 165-212 7-44 (121)
35 KOG1340 Prosaposin [Lipid tran 90.5 0.23 5E-06 47.3 3.2 48 214-261 160-207 (218)
36 PF08284 RVP_2: Retroviral asp 85.6 2.4 5.2E-05 37.2 6.3 27 384-410 105-131 (135)
37 PF13650 Asp_protease_2: Aspar 81.2 2 4.3E-05 33.6 3.6 29 177-212 3-31 (90)
38 cd05484 retropepsin_like_LTR_2 76.1 3.5 7.6E-05 33.1 3.7 30 176-212 4-33 (91)
39 PF11925 DUF3443: Protein of u 75.0 25 0.00055 36.0 10.1 144 51-207 82-272 (370)
40 PF13975 gag-asp_proteas: gag- 74.6 5 0.00011 31.1 4.0 30 176-212 12-41 (72)
41 cd05483 retropepsin_like_bacte 72.3 5.4 0.00012 31.4 3.8 30 176-212 6-35 (96)
42 PF13650 Asp_protease_2: Aspar 69.9 38 0.00082 26.1 8.3 81 7-102 8-89 (90)
43 cd06095 RP_RTVL_H_like Retrope 68.1 6 0.00013 31.6 3.2 29 177-212 3-31 (86)
44 PF00077 RVP: Retroviral aspar 51.4 10 0.00023 30.6 1.9 27 176-209 9-35 (100)
45 PF02160 Peptidase_A3: Caulifl 47.2 45 0.00097 31.5 5.6 44 337-402 67-110 (201)
46 cd05481 retropepsin_like_LTR_1 46.8 19 0.00042 29.3 2.8 23 191-213 11-33 (93)
47 COG3577 Predicted aspartyl pro 44.3 40 0.00087 32.0 4.8 37 166-212 102-138 (215)
48 PF09668 Asp_protease: Asparty 42.8 26 0.00056 30.5 3.1 30 176-212 28-57 (124)
49 TIGR03698 clan_AA_DTGF clan AA 38.7 23 0.00049 29.7 2.1 24 383-406 84-107 (107)
50 TIGR02281 clan_AA_DTGA clan AA 35.7 1.1E+02 0.0023 26.1 5.9 81 8-103 22-103 (121)
51 cd05470 pepsin_retropepsin_lik 30.8 41 0.0009 27.2 2.4 18 190-207 11-28 (109)
52 COG5550 Predicted aspartyl pro 29.5 33 0.00072 29.9 1.6 24 193-216 29-53 (125)
53 cd06094 RP_Saci_like RP_Saci_l 26.1 2.4E+02 0.0053 23.1 6.0 22 189-210 8-29 (89)
54 cd00303 retropepsin_like Retro 21.2 1.6E+02 0.0034 21.0 3.9 21 192-212 11-31 (92)
No 1
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=8.9e-56 Score=438.62 Aligned_cols=306 Identities=39% Similarity=0.742 Sum_probs=271.4
Q ss_pred cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145 2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ 77 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~ 77 (412)
+|||+|.+.+..||||+++||++. ..|..|+.|+|++|+|++..++++++.|++|++.|.+++|+|++++..+.++
T Consensus 7 iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig~~~~~~~ 86 (316)
T cd05486 7 IGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVEGITVQNQ 86 (316)
T ss_pred ECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEECCEEEcCE
Confidence 689999999999999999999986 2588899999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145 78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG 157 (412)
Q Consensus 78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g 157 (412)
.||++..+.+..|....++||||||++..+..+..|++++|++||+|++++||+||.+.++....|+|+|||+|++++.|
T Consensus 87 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g 166 (316)
T cd05486 87 QFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSG 166 (316)
T ss_pred EEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHccc
Confidence 99998877655566667899999999988766778899999999999999999999976544458999999999999999
Q ss_pred CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145 158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI 237 (412)
Q Consensus 158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 237 (412)
++.|+|+.+..+|.|.+++|+|+++.+. +.....++|||||+++++|.++++++.+.+++.
T Consensus 167 ~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~------------------ 227 (316)
T cd05486 167 QLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT------------------ 227 (316)
T ss_pred ceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCc------------------
Confidence 9999999999999999999999998764 345678999999999999999999998888543
Q ss_pred HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145 238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC 317 (412)
Q Consensus 238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c 317 (412)
T Consensus 228 -------------------------------------------------------------------------------- 227 (316)
T cd05486 228 -------------------------------------------------------------------------------- 227 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEE
Q 015145 318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHT 397 (412)
Q Consensus 318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yv 397 (412)
...+.|.+||+....+|+|+|+|+|+.++|+|++|++.....+..+|+++|+..+..+..++.||||++|||++|+
T Consensus 228 ----~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~ 303 (316)
T cd05486 228 ----ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYS 303 (316)
T ss_pred ----ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEE
Confidence 1135688999988889999999999999999999998754334568999998776544455689999999999999
Q ss_pred EEeCCCCeEEEEe
Q 015145 398 VFDSGKLRIGFAE 410 (412)
Q Consensus 398 vfD~e~~rIGfa~ 410 (412)
|||.+++|||||+
T Consensus 304 vfD~~~~~IGfA~ 316 (316)
T cd05486 304 VFDRGNNRVGFAP 316 (316)
T ss_pred EEeCCCCEeeccC
Confidence 9999999999996
No 2
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.2e-55 Score=437.18 Aligned_cols=307 Identities=45% Similarity=0.862 Sum_probs=270.5
Q ss_pred cccccceeeecCccCccceEEecC------CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEe
Q 015145 2 LNTLERLVLALPHKISVSYLIPAV------PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVK 75 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~------~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~ 75 (412)
+|||+|.+.+..||||+++||++. ..|..|+.|+|++|+|++..++++.+.|++|++.|++++|+|++++..+.
T Consensus 13 iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~~D~v~~g~~~~~ 92 (325)
T cd05490 13 IGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLSQDTVSIGGLQVE 92 (325)
T ss_pred ECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEeeeEEEECCEEEc
Confidence 689999999999999999999975 25778899999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145 76 DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 155 (412)
Q Consensus 76 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~ 155 (412)
++.||++....+..|....++||||||++..+.....|++++|++||+|.+++||+||.+.++....|+|+|||+|++++
T Consensus 93 ~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~ 172 (325)
T cd05490 93 GQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYY 172 (325)
T ss_pred CEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHc
Confidence 99999998876555655678999999999887767788999999999999999999998764444579999999999999
Q ss_pred ecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchh
Q 015145 156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGD 235 (412)
Q Consensus 156 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 235 (412)
.|++.|+|+.+..+|.|++++|+|++... .+.....++|||||+++++|.+++++|.+++++.
T Consensus 173 ~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---------------- 235 (325)
T cd05490 173 TGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---------------- 235 (325)
T ss_pred CCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----------------
Confidence 99999999999999999999999988743 2345678999999999999999999999988543
Q ss_pred hHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhh
Q 015145 236 LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE 315 (412)
Q Consensus 236 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 315 (412)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccce
Q 015145 316 LCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY 395 (412)
Q Consensus 316 ~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~ 395 (412)
+...+.|.++|+....+|+|+|.|+|+.|+|+|++|+++........|++.|+..+.++...+.||||++|||++
T Consensus 236 -----~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~ 310 (325)
T cd05490 236 -----PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRY 310 (325)
T ss_pred -----cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheee
Confidence 112356889999888899999999999999999999997654445689999987765444567899999999999
Q ss_pred EEEEeCCCCeEEEEe
Q 015145 396 HTVFDSGKLRIGFAE 410 (412)
Q Consensus 396 yvvfD~e~~rIGfa~ 410 (412)
|+|||++++|||||+
T Consensus 311 y~vfD~~~~~IGfA~ 325 (325)
T cd05490 311 YTVFDRDNDRVGFAK 325 (325)
T ss_pred EEEEEcCCcEeeccC
Confidence 999999999999996
No 3
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.1e-54 Score=430.72 Aligned_cols=306 Identities=37% Similarity=0.759 Sum_probs=270.0
Q ss_pred cccccceeeecCccCccceEEecC------CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEe
Q 015145 2 LNTLERLVLALPHKISVSYLIPAV------PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVK 75 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~------~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~ 75 (412)
+|||+|.+....||||+++||++. ..|..|..|+|++|+|++..++.+++.|++|++.|.+++|+|++++..+.
T Consensus 15 iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~~~~D~v~~g~~~~~ 94 (326)
T cd05487 15 IGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGFLSQDIVTVGGIPVT 94 (326)
T ss_pred ECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEEEeeeEEEECCEEee
Confidence 578888888888899999999975 25788999999999999999999999999999999999999999998874
Q ss_pred eeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145 76 DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 155 (412)
Q Consensus 76 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~ 155 (412)
+.||++.......+....++||||||+++.+..+..|++++|++||+|++++||+||.+.++....|+|+|||+|++++
T Consensus 95 -~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y 173 (326)
T cd05487 95 -QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHY 173 (326)
T ss_pred -EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhc
Confidence 7899998765444555678999999998877667889999999999999999999998765445589999999999999
Q ss_pred ecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchh
Q 015145 156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGD 235 (412)
Q Consensus 156 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 235 (412)
.|+++|+|+.+..+|.|+++++++++..+. +..+..++|||||+++++|.++++++.+++++..
T Consensus 174 ~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~--------------- 237 (326)
T cd05487 174 QGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKE--------------- 237 (326)
T ss_pred cCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCcc---------------
Confidence 999999999999999999999999998864 3456789999999999999999999999987551
Q ss_pred hHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhh
Q 015145 236 LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE 315 (412)
Q Consensus 236 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 315 (412)
T Consensus 238 -------------------------------------------------------------------------------- 237 (326)
T cd05487 238 -------------------------------------------------------------------------------- 237 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccce
Q 015145 316 LCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY 395 (412)
Q Consensus 316 ~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~ 395 (412)
..+.|.+||+....+|+|+|+|++++|+|+|++|+++..+...+.|++.|+..+.++..++.||||++|||++
T Consensus 238 -------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~ 310 (326)
T cd05487 238 -------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKF 310 (326)
T ss_pred -------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhcc
Confidence 1346889999988899999999999999999999998765566789999998765444557899999999999
Q ss_pred EEEEeCCCCeEEEEec
Q 015145 396 HTVFDSGKLRIGFAEA 411 (412)
Q Consensus 396 yvvfD~e~~rIGfa~~ 411 (412)
|+|||++++|||||+|
T Consensus 311 y~vfD~~~~~IGfA~a 326 (326)
T cd05487 311 YTEFDRQNNRIGFALA 326 (326)
T ss_pred EEEEeCCCCEEeeeeC
Confidence 9999999999999986
No 4
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.6e-54 Score=428.73 Aligned_cols=296 Identities=68% Similarity=1.168 Sum_probs=263.7
Q ss_pred cccccceeeecCccCccceEEecC-----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEee
Q 015145 2 LNTLERLVLALPHKISVSYLIPAV-----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKD 76 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~-----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~ 76 (412)
+|||+|.+.+..||||+++||++. ..|..|+.|+|++|+|++..+..+++.|++|++.|.+++|+|++++..+++
T Consensus 17 iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~~D~v~ig~~~v~~ 96 (317)
T cd06098 17 IGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISGFFSQDSVTVGDLVVKN 96 (317)
T ss_pred ECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEEEEEeeEEEECCEEECC
Confidence 689999999999999999999986 268889999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCee
Q 015145 77 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK 156 (412)
Q Consensus 77 ~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~ 156 (412)
+.||++....+..+....++||||||++..+..+..+++.+|++||+|.+++||+||.+..+....|+|+|||+|++++.
T Consensus 97 ~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~ 176 (317)
T cd06098 97 QVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFK 176 (317)
T ss_pred EEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcc
Confidence 99999998766556667889999999998877678889999999999999999999987644445899999999999999
Q ss_pred cCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhh
Q 015145 157 GKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDL 236 (412)
Q Consensus 157 g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 236 (412)
|++.|+|+.+..+|.+.+++++|+++.+..+.....++|||||+++.+|+++++++.
T Consensus 177 g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~----------------------- 233 (317)
T cd06098 177 GEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN----------------------- 233 (317)
T ss_pred cceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-----------------------
Confidence 999999999889999999999999998766666788999999999999998665432
Q ss_pred HHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhh
Q 015145 237 IWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINEL 316 (412)
Q Consensus 237 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 316 (412)
T Consensus 234 -------------------------------------------------------------------------------- 233 (317)
T cd06098 234 -------------------------------------------------------------------------------- 233 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceE
Q 015145 317 CDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 396 (412)
Q Consensus 317 c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y 396 (412)
+.++|+....+|+|+|+|+|++|+|+|++|+++..++....|+++|+..+.....++.||||++|||++|
T Consensus 234 ----------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y 303 (317)
T cd06098 234 ----------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYH 303 (317)
T ss_pred ----------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccE
Confidence 2358988788999999999999999999999987655566899999877654444568999999999999
Q ss_pred EEEeCCCCeEEEEe
Q 015145 397 TVFDSGKLRIGFAE 410 (412)
Q Consensus 397 vvfD~e~~rIGfa~ 410 (412)
+|||++++|||||+
T Consensus 304 ~VfD~~~~~iGfA~ 317 (317)
T cd06098 304 TVFDYGNLRVGFAE 317 (317)
T ss_pred EEEeCCCCEEeecC
Confidence 99999999999996
No 5
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2e-53 Score=421.93 Aligned_cols=304 Identities=37% Similarity=0.704 Sum_probs=268.4
Q ss_pred cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145 2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ 77 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~ 77 (412)
+|||+|.+.+..||||+++||++. ..|..++.|+|++|+|++..++.+++.|++|++.|.+++|++++|+..+.++
T Consensus 10 iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i~~g~~~i~~~ 89 (318)
T cd05477 10 IGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTVTVQGIIITNQ 89 (318)
T ss_pred ECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEEEECCEEEcCE
Confidence 689999999999999999999986 3588899999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145 78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG 157 (412)
Q Consensus 78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g 157 (412)
.||++....+..+.....+||||||++..+..+..+++++|+++|+|++++||+||.+.. ....|.|+|||+|++++.|
T Consensus 90 ~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~fGg~d~~~~~g 168 (318)
T cd05477 90 EFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVFGGVDNNLYTG 168 (318)
T ss_pred EEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEEcccCHHHcCC
Confidence 999999865544555567999999999888777889999999999999999999998752 2347999999999999999
Q ss_pred CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145 158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI 237 (412)
Q Consensus 158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 237 (412)
++.|+|+.+..+|.|++++++++++....+.....++|||||+++++|.+++++|.+.+++..
T Consensus 169 ~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~----------------- 231 (318)
T cd05477 169 QIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQ----------------- 231 (318)
T ss_pred ceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCcc-----------------
Confidence 999999999999999999999999987655556789999999999999999999999886540
Q ss_pred HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145 238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC 317 (412)
Q Consensus 238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c 317 (412)
T Consensus 232 -------------------------------------------------------------------------------- 231 (318)
T cd05477 232 -------------------------------------------------------------------------------- 231 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCC-CCcEEEccccccceE
Q 015145 318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR-GPLWILGDVFMGVYH 396 (412)
Q Consensus 318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~-~~~~iLG~~fl~~~y 396 (412)
...+.|.+||+....+|.|+|.|+|+++.|+|++|+.+. .++|++++++...+... .+.||||++|||++|
T Consensus 232 ----~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y 303 (318)
T cd05477 232 ----DQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYY 303 (318)
T ss_pred ----ccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCceEEEcHHHhhheE
Confidence 123568899998888999999999999999999999863 35899999865433222 257999999999999
Q ss_pred EEEeCCCCeEEEEec
Q 015145 397 TVFDSGKLRIGFAEA 411 (412)
Q Consensus 397 vvfD~e~~rIGfa~~ 411 (412)
++||++++|||||+|
T Consensus 304 ~vfD~~~~~ig~a~~ 318 (318)
T cd05477 304 SVYDLGNNQVGFATA 318 (318)
T ss_pred EEEeCCCCEEeeeeC
Confidence 999999999999986
No 6
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.1e-53 Score=445.76 Aligned_cols=300 Identities=32% Similarity=0.607 Sum_probs=265.7
Q ss_pred cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEE--CCc---EEEEEEcCceEEEEEEEEEEEECCe
Q 015145 2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISI--RGK---SCEINYGSGSISGFFSQDNVEVGDV 72 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~--~~~---~~~i~Y~~gs~~G~~~~D~v~lg~~ 72 (412)
+|||+|.+.+..||||+++|||+. ..|..|+.|+|++|+|++. .+. .+.++|++|++.|.+++|+|++|+.
T Consensus 127 IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l 206 (482)
T PTZ00165 127 VGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGL 206 (482)
T ss_pred eCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCE
Confidence 689999999999999999999986 4688999999999999998 665 6789999999999999999999999
Q ss_pred EEeeeEEEEEEeecCcccccCCccEEEeccCCccc---cCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCC
Q 015145 73 VVKDQVFIEATREGSLTFLLARFDGIIGLGFREIA---VGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGG 149 (412)
Q Consensus 73 ~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s---~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg 149 (412)
+++++.||++..+.+..|....+|||||||++.++ ..+..|++++|++||+|++++||+||.+.. ..+|+|+|||
T Consensus 207 ~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~--~~~G~l~fGG 284 (482)
T PTZ00165 207 KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDL--NQPGSISFGS 284 (482)
T ss_pred EEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCC--CCCCEEEeCC
Confidence 99999999999876666777789999999999873 345789999999999999999999998653 2379999999
Q ss_pred CCCCCe--ecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchh
Q 015145 150 VDPKHF--KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECK 227 (412)
Q Consensus 150 ~D~~~~--~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~ 227 (412)
+|++++ .|++.|+|+.+..+|.+.+++|+++++.+..+.....+++||||+++.+|.+++++|.+++++.
T Consensus 285 iD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------- 356 (482)
T PTZ00165 285 ADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE-------- 356 (482)
T ss_pred cCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc--------
Confidence 999877 5789999999999999999999999988776666789999999999999999999999988643
Q ss_pred hhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHH
Q 015145 228 LVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKE 307 (412)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 307 (412)
T Consensus 357 -------------------------------------------------------------------------------- 356 (482)
T PTZ00165 357 -------------------------------------------------------------------------------- 356 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCE-----EEEeCcccceEEec--cccccceeeeeeeccCCCC
Q 015145 308 KVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDK-----IFNLSPEQYILKTG--EGIAEVCISGFMAFDLPPP 380 (412)
Q Consensus 308 ~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~-----~~~i~p~~yl~~~~--~~~~~~C~~~i~~~~~~~~ 380 (412)
.+|+..+.+|+|+|.|+|. +|.|+|++|+++.. ....+.|++++...+.+.+
T Consensus 357 ---------------------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~ 415 (482)
T PTZ00165 357 ---------------------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAP 415 (482)
T ss_pred ---------------------ccccccccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCC
Confidence 2788878899999999864 99999999999742 3345689999998876555
Q ss_pred CCCcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145 381 RGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412 (412)
Q Consensus 381 ~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~ 412 (412)
.++.||||++|||++|+|||.+++|||||+++
T Consensus 416 ~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 416 RGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred CCceEEEchhhheeEEEEEeCCCCEEEEEeec
Confidence 67899999999999999999999999999975
No 7
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.4e-53 Score=422.97 Aligned_cols=306 Identities=46% Similarity=0.859 Sum_probs=270.2
Q ss_pred cccccceeeecCccCccceEEecCC------CCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEe
Q 015145 2 LNTLERLVLALPHKISVSYLIPAVP------ISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVK 75 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~~------~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~ 75 (412)
+|||+|.+....||||+++||++.. .|..+..|+|++|+|++..+++|.+.|++|++.|.+++|++++++..+.
T Consensus 18 vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~G~~~~D~v~ig~~~~~ 97 (329)
T cd05485 18 IGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLSGFLSTDTVSVGGVSVK 97 (329)
T ss_pred ECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEEEEEecCcEEECCEEEC
Confidence 5889999999999999999999861 4777889999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145 76 DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 155 (412)
Q Consensus 76 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~ 155 (412)
++.||++..+.+..+.....+||||||++..+.....|++.+|++||+|++++||+||.+.++....|+|+|||+|++++
T Consensus 98 ~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~ 177 (329)
T cd05485 98 GQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHY 177 (329)
T ss_pred CEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHc
Confidence 99999998776555666678999999999887667788999999999999999999998765444579999999999999
Q ss_pred ecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchh
Q 015145 156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGD 235 (412)
Q Consensus 156 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 235 (412)
.|+++|+|+.+..+|.|.++++++++..+. ..+..++|||||+++.+|+++++++.+++++..
T Consensus 178 ~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~--------------- 240 (329)
T cd05485 178 TGNFTYLPVTRKGYWQFKMDSVSVGEGEFC--SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAKP--------------- 240 (329)
T ss_pred ccceEEEEcCCceEEEEEeeEEEECCeeec--CCCcEEEEccCCcceeCCHHHHHHHHHHhCCcc---------------
Confidence 999999999999999999999999998763 456789999999999999999999999886541
Q ss_pred hHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhh
Q 015145 236 LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE 315 (412)
Q Consensus 236 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 315 (412)
T Consensus 241 -------------------------------------------------------------------------------- 240 (329)
T cd05485 241 -------------------------------------------------------------------------------- 240 (329)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccce
Q 015145 316 LCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY 395 (412)
Q Consensus 316 ~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~ 395 (412)
...+.|.+||+..+.+|+|+|+|++++|.|+|++|+++....+..+|++.++..+.++..++.||||++|||++
T Consensus 241 ------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~ 314 (329)
T cd05485 241 ------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKY 314 (329)
T ss_pred ------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccc
Confidence 11246889999888899999999999999999999998765556789999987655444556899999999999
Q ss_pred EEEEeCCCCeEEEEe
Q 015145 396 HTVFDSGKLRIGFAE 410 (412)
Q Consensus 396 yvvfD~e~~rIGfa~ 410 (412)
|+|||++++|||||+
T Consensus 315 y~vFD~~~~~ig~a~ 329 (329)
T cd05485 315 YTEFDLGNNRVGFAT 329 (329)
T ss_pred eEEEeCCCCEEeecC
Confidence 999999999999985
No 8
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=5.3e-53 Score=418.93 Aligned_cols=297 Identities=38% Similarity=0.711 Sum_probs=263.1
Q ss_pred cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145 2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ 77 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~ 77 (412)
+|||+|.+.+..||||+++||++. ..|..|+.|+|++|+|++..++++++.|++|++.|.+++|+|++|+..+.++
T Consensus 17 vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~~~~D~v~ig~~~i~~~ 96 (317)
T cd05478 17 IGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGILGYDTVQVGGISDTNQ 96 (317)
T ss_pred eCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCCcEEEEEECCceEEEEEeeeEEEECCEEECCE
Confidence 689999999999999999999976 3577899999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145 78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG 157 (412)
Q Consensus 78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g 157 (412)
.||++....+..+.....+||||||++..+..+..+++++|++||+|.+++||+||.+..+ .+|.|+|||+|++++.|
T Consensus 97 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~--~~g~l~~Gg~d~~~~~g 174 (317)
T cd05478 97 IFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ--QGSVVTFGGIDPSYYTG 174 (317)
T ss_pred EEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--CCeEEEEcccCHHHccC
Confidence 9999987655433344679999999998877677889999999999999999999998642 37999999999999999
Q ss_pred CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145 158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI 237 (412)
Q Consensus 158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 237 (412)
+++|+|+.+..+|.|.++++.|+++.+. ...+..++||||++++++|++++++|.+++++..
T Consensus 175 ~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~----------------- 236 (317)
T cd05478 175 SLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ----------------- 236 (317)
T ss_pred ceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc-----------------
Confidence 9999999999999999999999999875 2345789999999999999999999999886540
Q ss_pred HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145 238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC 317 (412)
Q Consensus 238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c 317 (412)
T Consensus 237 -------------------------------------------------------------------------------- 236 (317)
T cd05478 237 -------------------------------------------------------------------------------- 236 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEE
Q 015145 318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHT 397 (412)
Q Consensus 318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yv 397 (412)
...+.|.+||+....+|+|+|.|+|++|+|+|++|+.+. .++|++.|+..+ ..+.||||++|||++|+
T Consensus 237 ----~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~----~~~~~IlG~~fl~~~y~ 304 (317)
T cd05478 237 ----NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMG----LGELWILGDVFIRQYYS 304 (317)
T ss_pred ----ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCC----CCCeEEechHHhcceEE
Confidence 123568899998888999999999999999999999864 458999898642 24689999999999999
Q ss_pred EEeCCCCeEEEEe
Q 015145 398 VFDSGKLRIGFAE 410 (412)
Q Consensus 398 vfD~e~~rIGfa~ 410 (412)
|||++++||||||
T Consensus 305 vfD~~~~~iG~A~ 317 (317)
T cd05478 305 VFDRANNKVGLAP 317 (317)
T ss_pred EEeCCCCEEeecC
Confidence 9999999999996
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=3.8e-52 Score=413.54 Aligned_cols=300 Identities=38% Similarity=0.700 Sum_probs=265.1
Q ss_pred cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145 2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ 77 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~ 77 (412)
+|||+|.+....||||+++||++. ..|..|+.|+|++|+|++..++.+.+.|++|++.|.+++|++++++..++++
T Consensus 17 iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G~~~~D~v~ig~~~~~~~ 96 (320)
T cd05488 17 LGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEGFVSQDTLSIGDLTIKKQ 96 (320)
T ss_pred ECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeCCCEEEEEECCceEEEEEEEeEEEECCEEECCE
Confidence 689999999999999999999987 3688889999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeec
Q 015145 78 VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG 157 (412)
Q Consensus 78 ~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g 157 (412)
.||++....+..+.....+||||||++..+..+..+.+.+|++||+|.+++||+||.+.. ...|.|+|||+|++++.|
T Consensus 97 ~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~~~G~l~fGg~d~~~~~g 174 (320)
T cd05488 97 DFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--EDGGEATFGGIDESRFTG 174 (320)
T ss_pred EEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--CCCcEEEECCcCHHHcCC
Confidence 999998776554555678999999999887666678889999999999999999999863 247999999999999999
Q ss_pred CceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhH
Q 015145 158 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLI 237 (412)
Q Consensus 158 ~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 237 (412)
+++|+|+.+..+|.|.+++++++++.+.. ....++|||||+++++|+++++.+.+++++..
T Consensus 175 ~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~----------------- 235 (320)
T cd05488 175 KITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK----------------- 235 (320)
T ss_pred ceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhCCcc-----------------
Confidence 99999999889999999999999988753 45679999999999999999999999886540
Q ss_pred HHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhc
Q 015145 238 WDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELC 317 (412)
Q Consensus 238 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c 317 (412)
T Consensus 236 -------------------------------------------------------------------------------- 235 (320)
T cd05488 236 -------------------------------------------------------------------------------- 235 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEE
Q 015145 318 DSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHT 397 (412)
Q Consensus 318 ~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yv 397 (412)
...+.|.+||+....+|+|+|.|+|++|.|+|++|+++. .+.|++.+...+.+...++.||||++|||++|+
T Consensus 236 ----~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~----~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~ 307 (320)
T cd05488 236 ----SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEV----SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYS 307 (320)
T ss_pred ----ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecC----CCeEEEEEEECcCCCCCCCeEEEchHHhhheEE
Confidence 124568899998888999999999999999999999853 247999998765443345689999999999999
Q ss_pred EEeCCCCeEEEEe
Q 015145 398 VFDSGKLRIGFAE 410 (412)
Q Consensus 398 vfD~e~~rIGfa~ 410 (412)
|||++++|||||+
T Consensus 308 vfD~~~~~iG~a~ 320 (320)
T cd05488 308 VYDLGNNAVGLAK 320 (320)
T ss_pred EEeCCCCEEeecC
Confidence 9999999999996
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.6e-50 Score=417.53 Aligned_cols=299 Identities=29% Similarity=0.514 Sum_probs=257.8
Q ss_pred cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145 2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ 77 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~ 77 (412)
+|||+|.+.+..||||+++|||+. ..|..|+.|+|++|+|++..++.+++.|++|++.|.+++|+|++|+..++ .
T Consensus 146 IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~GsvsG~~~~DtVtiG~~~v~-~ 224 (453)
T PTZ00147 146 LGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDGTKVEMNYVSGTVSGFFSKDLVTIGNLSVP-Y 224 (453)
T ss_pred ECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECCCEEEEEeCCCCEEEEEEEEEEEECCEEEE-E
Confidence 689999999999999999999986 36888999999999999999999999999999999999999999999988 5
Q ss_pred EEEEEEeecCc--ccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145 78 VFIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 155 (412)
Q Consensus 78 ~fg~~~~~~~~--~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~ 155 (412)
.|+++.+..+. .+....+|||||||++..+.....|++.+|++||+|++++||+||.+.. ...|.|+|||+|++++
T Consensus 225 qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~--~~~G~L~fGGiD~~ky 302 (453)
T PTZ00147 225 KFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPED--KHKGYLTIGGIEERFY 302 (453)
T ss_pred EEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCC--CCCeEEEECCcChhhc
Confidence 78888765442 2344578999999999887777889999999999999999999998643 2479999999999999
Q ss_pred ecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchh
Q 015145 156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGD 235 (412)
Q Consensus 156 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 235 (412)
.|++.|+|+.+..+|.|.++ +.+++... ....++|||||+++.+|+++++++.+++++...
T Consensus 303 ~G~l~y~pl~~~~~W~V~l~-~~vg~~~~----~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~-------------- 363 (453)
T PTZ00147 303 EGPLTYEKLNHDLYWQVDLD-VHFGNVSS----EKANVIVDSGTSVITVPTEFLNKFVESLDVFKV-------------- 363 (453)
T ss_pred CCceEEEEcCCCceEEEEEE-EEECCEec----CceeEEECCCCchhcCCHHHHHHHHHHhCCeec--------------
Confidence 99999999998899999997 57776532 456799999999999999999999998865410
Q ss_pred hHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhh
Q 015145 236 LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE 315 (412)
Q Consensus 236 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 315 (412)
T Consensus 364 -------------------------------------------------------------------------------- 363 (453)
T PTZ00147 364 -------------------------------------------------------------------------------- 363 (453)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccce
Q 015145 316 LCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY 395 (412)
Q Consensus 316 ~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~ 395 (412)
...+.|.++|+. ..+|+|+|.++|+.++|+|++|+.+..+.....|++++++.+. ..+.||||++|||++
T Consensus 364 ------~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~---~~~~~ILGd~FLr~~ 433 (453)
T PTZ00147 364 ------PFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDL---EKNTFILGDPFMRKY 433 (453)
T ss_pred ------CCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEEEEECCC---CCCCEEECHHHhccE
Confidence 113457889996 5789999999999999999999986554455689999987542 235899999999999
Q ss_pred EEEEeCCCCeEEEEecC
Q 015145 396 HTVFDSGKLRIGFAEAA 412 (412)
Q Consensus 396 yvvfD~e~~rIGfa~~~ 412 (412)
|+|||++++|||||+++
T Consensus 434 YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 434 FTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEEEECCCCEEEEEEec
Confidence 99999999999999985
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=9e-50 Score=412.94 Aligned_cols=299 Identities=27% Similarity=0.501 Sum_probs=255.7
Q ss_pred cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEeee
Q 015145 2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKDQ 77 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~~ 77 (412)
+|||+|.+.+..||||+++|||++ ..|..|+.|+|++|+|++..++.+++.|++|++.|.+++|+|++|+.++. .
T Consensus 145 IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~Gsv~G~~~~Dtv~iG~~~~~-~ 223 (450)
T PTZ00013 145 VGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMP-Y 223 (450)
T ss_pred ECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCCcEEEEEECCceEEEEEEEEEEEECCEEEc-c
Confidence 689999999999999999999987 26888999999999999999999999999999999999999999999887 5
Q ss_pred EEEEEEeecC--cccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145 78 VFIEATREGS--LTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 155 (412)
Q Consensus 78 ~fg~~~~~~~--~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~ 155 (412)
.|+++..... ..+....++||||||++..+.....|++.+|++||+|++++||+||.+.. ...|.|+|||+|+++|
T Consensus 224 ~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~--~~~G~L~fGGiD~~~y 301 (450)
T PTZ00013 224 KFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHD--VHAGYLTIGGIEEKFY 301 (450)
T ss_pred EEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCCC--CCCCEEEECCcCcccc
Confidence 7888776432 22444578999999999887667889999999999999999999998643 2479999999999999
Q ss_pred ecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchh
Q 015145 156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGD 235 (412)
Q Consensus 156 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 235 (412)
.|++.|+|+.+..+|.|+++ +.++.... ....++|||||+++++|+++++++.+++++..
T Consensus 302 ~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--------------- 361 (450)
T PTZ00013 302 EGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKFFANLNVIK--------------- 361 (450)
T ss_pred ccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHHHHHhCCee---------------
Confidence 99999999998999999997 66665432 34679999999999999999999999886541
Q ss_pred hHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhh
Q 015145 236 LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE 315 (412)
Q Consensus 236 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 315 (412)
T Consensus 362 -------------------------------------------------------------------------------- 361 (450)
T PTZ00013 362 -------------------------------------------------------------------------------- 361 (450)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccce
Q 015145 316 LCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY 395 (412)
Q Consensus 316 ~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~ 395 (412)
. ...+.|.++|+. ..+|+|+|.++|.+++|+|++|+.+......+.|++.+.+.+. ..+.||||++|||++
T Consensus 362 ----~-~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~---~~~~~ILGd~FLr~~ 432 (450)
T PTZ00013 362 ----V-PFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMITMLPVDI---DDNTFILGDPFMRKY 432 (450)
T ss_pred ----c-CCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCCCeeEEEEEECCC---CCCCEEECHHHhccE
Confidence 0 123458889986 5789999999999999999999976443345689999986532 235899999999999
Q ss_pred EEEEeCCCCeEEEEecC
Q 015145 396 HTVFDSGKLRIGFAEAA 412 (412)
Q Consensus 396 yvvfD~e~~rIGfa~~~ 412 (412)
|+|||++++|||||+++
T Consensus 433 Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 433 FTVFDYDKESVGFAIAK 449 (450)
T ss_pred EEEEECCCCEEEEEEeC
Confidence 99999999999999985
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.3e-50 Score=397.87 Aligned_cols=304 Identities=33% Similarity=0.576 Sum_probs=270.2
Q ss_pred cccccceeeecCccCccceEEecCC-----CCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEee
Q 015145 2 LNTLERLVLALPHKISVSYLIPAVP-----ISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKD 76 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~~-----~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~ 76 (412)
+|||+|.+....||||+++||++.. .|..+..|+++.|+|++..++.+.++|++|+++|.+++|++++++..+.+
T Consensus 8 iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~ig~~~~~~ 87 (317)
T PF00026_consen 8 IGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSIGGLTIPN 87 (317)
T ss_dssp ETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred ECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEeeeeccccc
Confidence 6899999999999999999999761 46788999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeecCcccccCCccEEEeccCCccccCC-CCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145 77 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGD-AVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 155 (412)
Q Consensus 77 ~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~-~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~ 155 (412)
+.||++....+..+.....+||||||++..+... ..+++++|+++|+|.+++||+++++.. ...|.|+|||+|++++
T Consensus 88 ~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~Gg~d~~~~ 165 (317)
T PF00026_consen 88 QTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFGGYDPSKY 165 (317)
T ss_dssp EEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEESSEEGGGE
T ss_pred cceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheeeccccccc
Confidence 9999999976655667788999999988776554 788999999999999999999999885 4579999999999999
Q ss_pred ecCceEeeccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchh
Q 015145 156 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGD 235 (412)
Q Consensus 156 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 235 (412)
+|+++|+|+....+|.+.+++|.+++... .+.....++||||++++.+|.++++.+++.+++...
T Consensus 166 ~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~-------------- 230 (317)
T PF00026_consen 166 DGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYS-------------- 230 (317)
T ss_dssp ESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEE--------------
T ss_pred cCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhccccc--------------
Confidence 99999999999999999999999999932 234567899999999999999999999999987620
Q ss_pred hHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhh
Q 015145 236 LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE 315 (412)
Q Consensus 236 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 315 (412)
T Consensus 231 -------------------------------------------------------------------------------- 230 (317)
T PF00026_consen 231 -------------------------------------------------------------------------------- 230 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccce
Q 015145 316 LCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY 395 (412)
Q Consensus 316 ~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~ 395 (412)
.+.|.++|+....+|.|+|.|++.+|+|+|++|+.+..+.....|++.|...+. ....+.++||.+|||++
T Consensus 231 --------~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~~iLG~~fl~~~ 301 (317)
T PF00026_consen 231 --------DGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDDWILGSPFLRNY 301 (317)
T ss_dssp --------CSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSEEEEEHHHHTTE
T ss_pred --------ceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCceEecHHHhhce
Confidence 157899999888899999999999999999999998877666689999998654 34567999999999999
Q ss_pred EEEEeCCCCeEEEEec
Q 015145 396 HTVFDSGKLRIGFAEA 411 (412)
Q Consensus 396 yvvfD~e~~rIGfa~~ 411 (412)
|++||++++|||||+|
T Consensus 302 y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 302 YVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCEEEEecC
Confidence 9999999999999997
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.2e-45 Score=359.71 Aligned_cols=262 Identities=28% Similarity=0.443 Sum_probs=227.0
Q ss_pred cccccceeeecCccCccceEEecC----CCCCCCCCCCCCCCCceEE-CCcEEEEEEcCce-EEEEEEEEEEEECCeEEe
Q 015145 2 LNTLERLVLALPHKISVSYLIPAV----PISGFHLQSAISLFPAISI-RGKSCEINYGSGS-ISGFFSQDNVEVGDVVVK 75 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~----~~c~~~~~y~p~~Sst~~~-~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~~~ 75 (412)
+|||+|.+.+..||||+++||+++ +.|..+..|+|++|+|++. .++++.+.|++|+ +.|.+++|+|++++..+.
T Consensus 7 vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ig~~~~~ 86 (278)
T cd06097 7 IGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVSIGGVEVP 86 (278)
T ss_pred ECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEEECCEEEC
Confidence 689999999999999999999987 2345677899999999987 5789999999997 899999999999999999
Q ss_pred eeEEEEEEeecCcccccCCccEEEeccCCccccC---CCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCC
Q 015145 76 DQVFIEATREGSLTFLLARFDGIIGLGFREIAVG---DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDP 152 (412)
Q Consensus 76 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~---~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~ 152 (412)
++.||+++...+..+....++||||||++..+.. ...+++++|.+++. +++||+||.+. ..|+|+|||+|+
T Consensus 87 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l~fGg~D~ 160 (278)
T cd06097 87 NQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFYTFGYIDE 160 (278)
T ss_pred CeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEEEEeccCh
Confidence 9999999987654456678899999999876542 35678999999975 89999999873 279999999999
Q ss_pred CCeecCceEeeccc-cceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhh
Q 015145 153 KHFKGKHTYVPVTK-KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVS 231 (412)
Q Consensus 153 ~~~~g~l~~~p~~~-~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~ 231 (412)
+++.|++.|+|+.+ ..+|.|.+++++++++... ...+..++|||||+++++|.++++++.+++++..
T Consensus 161 ~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~----------- 228 (278)
T cd06097 161 SKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVPGAY----------- 228 (278)
T ss_pred HHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCcCCc-----------
Confidence 99999999999986 7899999999999998432 3467889999999999999999999999984330
Q ss_pred hchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHH
Q 015145 232 QYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLS 311 (412)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 311 (412)
T Consensus 229 -------------------------------------------------------------------------------- 228 (278)
T cd06097 229 -------------------------------------------------------------------------------- 228 (278)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEcccc
Q 015145 312 YINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVF 391 (412)
Q Consensus 312 ~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~f 391 (412)
.....+.|.+||+.. +|+|+|.| .||||++|
T Consensus 229 --------~~~~~~~~~~~C~~~--~P~i~f~~---------------------------------------~~ilGd~f 259 (278)
T cd06097 229 --------YDSEYGGWVFPCDTT--LPDLSFAV---------------------------------------FSILGDVF 259 (278)
T ss_pred --------ccCCCCEEEEECCCC--CCCEEEEE---------------------------------------EEEEcchh
Confidence 012356799999963 89999998 48999999
Q ss_pred ccceEEEEeCCCCeEEEEe
Q 015145 392 MGVYHTVFDSGKLRIGFAE 410 (412)
Q Consensus 392 l~~~yvvfD~e~~rIGfa~ 410 (412)
||++|+|||++++|||||+
T Consensus 260 l~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 260 LKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred hCceeEEEcCCCceeeecC
Confidence 9999999999999999996
No 14
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.4e-45 Score=372.78 Aligned_cols=309 Identities=25% Similarity=0.362 Sum_probs=242.3
Q ss_pred cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEe--eeEE
Q 015145 2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVK--DQVF 79 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~--~~~f 79 (412)
+|||+|.+.+..||||+++||++...|..|+.|+|++|+|++..++.+++.|++|++.|.+++|+|++++.... .+.|
T Consensus 10 iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ig~~~~~~~~~~~ 89 (364)
T cd05473 10 IGTPPQKLNILVDTGSSNFAVAAAPHPFIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVSIPKGPNVTFRANI 89 (364)
T ss_pred ecCCCceEEEEEecCCcceEEEcCCCccccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEEECCCCccceEEee
Confidence 68999999999999999999999876777889999999999999999999999999999999999999863211 1234
Q ss_pred EEEEeecCcccccCCccEEEeccCCcccc--CCCCchHHHHHHcCCCCCCeEEEEecCCC-------CCCCCcEEEeCCC
Q 015145 80 IEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDP-------DAEEGGEIVFGGV 150 (412)
Q Consensus 80 g~~~~~~~~~~~~~~~dGilGLg~~~~s~--~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~-------~~~~~G~l~fGg~ 150 (412)
+++....+..+....++||||||++.++. ....+++++|++|+.+ +++||+||+... +....|.|+|||+
T Consensus 90 ~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~ 168 (364)
T cd05473 90 AAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGI 168 (364)
T ss_pred EEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEecccccccccccccCCCcEEEeCCc
Confidence 45544332212234679999999998764 2467899999999987 579999986421 2234799999999
Q ss_pred CCCCeecCceEeeccccceeEEEEceEEECCeeeceecC---CceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchh
Q 015145 151 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEG---GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECK 227 (412)
Q Consensus 151 D~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~---~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~ 227 (412)
|++++.|++.|+|+.+..+|.|.+++|+|+++.+..... ...++|||||+++++|+++++++.++++++..
T Consensus 169 D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~------ 242 (364)
T cd05473 169 DPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASL------ 242 (364)
T ss_pred CHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcc------
Confidence 999999999999999889999999999999998764221 23699999999999999999999999976510
Q ss_pred hhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHH
Q 015145 228 LVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKE 307 (412)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 307 (412)
..
T Consensus 243 --------------~~---------------------------------------------------------------- 244 (364)
T cd05473 243 --------------IE---------------------------------------------------------------- 244 (364)
T ss_pred --------------cc----------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHhhhhccCCC-CCCCceeeeCCCCC-----CCCcEEEEECC------EEEEeCcccceEEecc-ccccceee-eee
Q 015145 308 KVLSYINELCDSLP-NPMGESIIDCDRIP-----TMPNVSFTIGD------KIFNLSPEQYILKTGE-GIAEVCIS-GFM 373 (412)
Q Consensus 308 ~~~~~~~~~c~~~~-~~~~~~~ipC~~~~-----~lp~l~f~~gg------~~~~i~p~~yl~~~~~-~~~~~C~~-~i~ 373 (412)
..+ ...+.+.++|.... .+|+|+|+|+| .++.|+|++|+.+... .....|+. .+.
T Consensus 245 -----------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~ 313 (364)
T cd05473 245 -----------DFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAIS 313 (364)
T ss_pred -----------cCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeee
Confidence 000 11123456886533 58999999965 4789999999986432 23457975 232
Q ss_pred eccCCCCCCCcEEEccccccceEEEEeCCCCeEEEEecC
Q 015145 374 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 412 (412)
Q Consensus 374 ~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~~ 412 (412)
. ..+.||||+.|||++|+|||++++|||||+++
T Consensus 314 ~------~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~ 346 (364)
T cd05473 314 Q------STNGTVIGAVIMEGFYVVFDRANKRVGFAVST 346 (364)
T ss_pred c------CCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence 1 23569999999999999999999999999874
No 15
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=7e-45 Score=355.47 Aligned_cols=271 Identities=25% Similarity=0.416 Sum_probs=234.3
Q ss_pred cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCeEEeeeEEE
Q 015145 2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFI 80 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~~~~~~fg 80 (412)
+|||+|.+.+..||||+++||+ ++++.|++|+ +.|++++|++++++..+.++.||
T Consensus 9 iGtp~q~~~v~~DTgS~~~wv~------------------------~~~~~Y~~g~~~~G~~~~D~v~~g~~~~~~~~fg 64 (295)
T cd05474 9 VGTPPQKVTVLLDTGSSDLWVP------------------------DFSISYGDGTSASGTWGTDTVSIGGATVKNLQFA 64 (295)
T ss_pred ECCCCcEEEEEEeCCCCcceee------------------------eeEEEeccCCcEEEEEEEEEEEECCeEecceEEE
Confidence 6888999999999999999999 6899999965 89999999999999999999999
Q ss_pred EEEeecCcccccCCccEEEeccCCcccc-----CCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145 81 EATREGSLTFLLARFDGIIGLGFREIAV-----GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 155 (412)
Q Consensus 81 ~~~~~~~~~~~~~~~dGilGLg~~~~s~-----~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~ 155 (412)
++... ...+||||||+...+. ...++++++|++||+|.+++||+|+.+.. ...|.|+|||+|++++
T Consensus 65 ~~~~~-------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g~l~~Gg~d~~~~ 135 (295)
T cd05474 65 VANST-------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTGSILFGGVDTAKY 135 (295)
T ss_pred EEecC-------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCceeEEEeeecccee
Confidence 99973 2458999999988743 23567999999999999999999998753 2379999999999999
Q ss_pred ecCceEeecccc------ceeEEEEceEEECCeeec--eecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchh
Q 015145 156 KGKHTYVPVTKK------GYWQFELGDILIGNQSTG--VCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECK 227 (412)
Q Consensus 156 ~g~l~~~p~~~~------~~w~v~~~~i~v~~~~~~--~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~ 227 (412)
.|++.|+|+... .+|.|.+++|.+++.... .......++||||++++++|.+++++|.+++++...
T Consensus 136 ~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~------ 209 (295)
T cd05474 136 SGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYD------ 209 (295)
T ss_pred eceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEc------
Confidence 999999999765 789999999999998753 234567899999999999999999999999976510
Q ss_pred hhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHH
Q 015145 228 LVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKE 307 (412)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 307 (412)
T Consensus 210 -------------------------------------------------------------------------------- 209 (295)
T cd05474 210 -------------------------------------------------------------------------------- 209 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEecc--ccccceeeeeeeccCCCCCCCcE
Q 015145 308 KVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGE--GIAEVCISGFMAFDLPPPRGPLW 385 (412)
Q Consensus 308 ~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~--~~~~~C~~~i~~~~~~~~~~~~~ 385 (412)
...+.|.++|+.... |+|+|.|+|++|+|++++|+++... ...+.|++.|+..+. +.|
T Consensus 210 --------------~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~~-----~~~ 269 (295)
T cd05474 210 --------------SDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYLGIQPSTS-----DYN 269 (295)
T ss_pred --------------CCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEEEEEeCCC-----CcE
Confidence 113568899998777 9999999999999999999987642 346789998986531 689
Q ss_pred EEccccccceEEEEeCCCCeEEEEec
Q 015145 386 ILGDVFMGVYHTVFDSGKLRIGFAEA 411 (412)
Q Consensus 386 iLG~~fl~~~yvvfD~e~~rIGfa~~ 411 (412)
|||++|||++|++||.+++|||||+|
T Consensus 270 iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 270 ILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EeChHHhhcEEEEEECCCCEEEeecC
Confidence 99999999999999999999999996
No 16
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=4.1e-43 Score=349.77 Aligned_cols=272 Identities=25% Similarity=0.348 Sum_probs=225.1
Q ss_pred cccccceeeecCccCccceEEecC--CCCCC--CCCCCCCCCCceEEC----------------CcEEEEEEcCce-EEE
Q 015145 2 LNTLERLVLALPHKISVSYLIPAV--PISGF--HLQSAISLFPAISIR----------------GKSCEINYGSGS-ISG 60 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~--~~c~~--~~~y~p~~Sst~~~~----------------~~~~~i~Y~~gs-~~G 60 (412)
+|||+|.+.+..||||+++||||. ..|.. ++.|+|++|+|++.. .+.|.+.|++|+ +.|
T Consensus 10 vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~i~Y~~gs~~~G 89 (326)
T cd06096 10 IGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYSISYSEGSSISG 89 (326)
T ss_pred ecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEEEEECCCCceee
Confidence 689999999999999999999997 34544 478999999999763 568999999998 899
Q ss_pred EEEEEEEEECCeEEe-------eeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCC--CeEEE
Q 015145 61 FFSQDNVEVGDVVVK-------DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE--EVFSF 131 (412)
Q Consensus 61 ~~~~D~v~lg~~~~~-------~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~--~~Fsl 131 (412)
.+++|+|+|++..+. ++.|||+..+.+ .+.....+||||||+.+.+. ..+...+|++++.+.. ++||+
T Consensus 90 ~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~~~~~~~~~FS~ 166 (326)
T cd06096 90 FYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKRPKLKKDKIFSI 166 (326)
T ss_pred EEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhcccccCCceEEE
Confidence 999999999986552 467999987654 34455679999999987542 3344556888877765 99999
Q ss_pred EecCCCCCCCCcEEEeCCCCCCCee----------cCceEeeccccceeEEEEceEEECCeee-ceecCCceEEEcCCCC
Q 015145 132 WLNRDPDAEEGGEIVFGGVDPKHFK----------GKHTYVPVTKKGYWQFELGDILIGNQST-GVCEGGCAAIVDSGTS 200 (412)
Q Consensus 132 ~l~~~~~~~~~G~l~fGg~D~~~~~----------g~l~~~p~~~~~~w~v~~~~i~v~~~~~-~~~~~~~~~ivDSGts 200 (412)
||.+. .|.|+|||+|++++. +++.|+|+.+..+|.|.+++|++++... ........++|||||+
T Consensus 167 ~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs 241 (326)
T cd06096 167 CLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGST 241 (326)
T ss_pred EEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceecccCCCEEEeCCCC
Confidence 99864 699999999999987 8899999998899999999999998861 1234678899999999
Q ss_pred CcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeecccccc
Q 015145 201 LLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSA 280 (412)
Q Consensus 201 ~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (412)
++++|+++++++.+.
T Consensus 242 ~~~lp~~~~~~l~~~----------------------------------------------------------------- 256 (326)
T cd06096 242 LSHFPEDLYNKINNF----------------------------------------------------------------- 256 (326)
T ss_pred cccCCHHHHHHHHhh-----------------------------------------------------------------
Confidence 999999998876531
Q ss_pred CCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEEeCcccceEE
Q 015145 281 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILK 359 (412)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~g-g~~~~i~p~~yl~~ 359 (412)
+|+|+|.|+ |++++++|++|+++
T Consensus 257 --------------------------------------------------------~P~i~~~f~~g~~~~i~p~~y~~~ 280 (326)
T cd06096 257 --------------------------------------------------------FPTITIIFENNLKIDWKPSSYLYK 280 (326)
T ss_pred --------------------------------------------------------cCcEEEEEcCCcEEEECHHHhccc
Confidence 178999998 89999999999987
Q ss_pred eccccccceeeeeeeccCCCCCCCcEEEccccccceEEEEeCCCCeEEEEec
Q 015145 360 TGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411 (412)
Q Consensus 360 ~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~ 411 (412)
.... .|...+... .+.||||++|||++|+|||++++|||||++
T Consensus 281 ~~~~---~c~~~~~~~------~~~~ILG~~flr~~y~vFD~~~~riGfa~~ 323 (326)
T cd06096 281 KESF---WCKGGEKSV------SNKPILGASFFKNKQIIFDLDNNRIGFVES 323 (326)
T ss_pred cCCc---eEEEEEecC------CCceEEChHHhcCcEEEEECcCCEEeeEcC
Confidence 5432 476666532 257999999999999999999999999986
No 17
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=3.5e-42 Score=338.42 Aligned_cols=280 Identities=23% Similarity=0.351 Sum_probs=218.3
Q ss_pred cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCe-EEeeeEE
Q 015145 2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDV-VVKDQVF 79 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~-~~~~~~f 79 (412)
+|||+|.+.+..||||+++||+|. .| +.|.+.|++|+ +.|++++|+|++++. .+.++.|
T Consensus 8 iGtP~q~~~v~~DTGSs~~Wv~c~-~c------------------~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~~~~~~~F 68 (299)
T cd05472 8 LGTPARDQTVIVDTGSDLTWVQCQ-PC------------------CLYQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAF 68 (299)
T ss_pred cCCCCcceEEEecCCCCcccccCC-CC------------------CeeeeEeCCCceEEEEEEEEEEEeCCCCccCCEEE
Confidence 799999999999999999999874 45 68999999998 599999999999998 8899999
Q ss_pred EEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeecCc
Q 015145 80 IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKH 159 (412)
Q Consensus 80 g~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g~l 159 (412)
||+....+. + ...+||||||+...+ ++.+|..+ .+++||+||.+.. ....|+|+|||+|++ .|++
T Consensus 69 g~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~fGg~d~~--~g~l 133 (299)
T cd05472 69 GCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSFGAAASV--PAGA 133 (299)
T ss_pred ECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEeCCcccc--CCCc
Confidence 999876542 2 267999999998765 56677655 3589999998743 234899999999999 8999
Q ss_pred eEeecccc----ceeEEEEceEEECCeeecee---cCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhh
Q 015145 160 TYVPVTKK----GYWQFELGDILIGNQSTGVC---EGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQ 232 (412)
Q Consensus 160 ~~~p~~~~----~~w~v~~~~i~v~~~~~~~~---~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~ 232 (412)
.|+|+.+. .+|.|++++|+|+++.+... .....++|||||+++++|++++++|.+++.+... .
T Consensus 134 ~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~----------~ 203 (299)
T cd05472 134 SFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMA----------A 203 (299)
T ss_pred eECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhc----------c
Confidence 99999753 68999999999999987642 2356799999999999999999999998854300 0
Q ss_pred chhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHH
Q 015145 233 YGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSY 312 (412)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 312 (412)
+. ..+. . .
T Consensus 204 ~~----------~~~~-----------------------------------------------------------~---~ 211 (299)
T cd05472 204 YP----------RAPG-----------------------------------------------------------F---S 211 (299)
T ss_pred CC----------CCCC-----------------------------------------------------------C---C
Confidence 00 0000 0 0
Q ss_pred hhhhccCCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEcccc
Q 015145 313 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVF 391 (412)
Q Consensus 313 ~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~g-g~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~f 391 (412)
.-+.|.. ++|.....+|+|+|+|+ ++++.|+|++|++... .....|+ ++...+ ...+.||||+.|
T Consensus 212 ~~~~C~~---------~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~-~~~~~C~-~~~~~~---~~~~~~ilG~~f 277 (299)
T cd05472 212 ILDTCYD---------LSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD-DSSQVCL-AFAGTS---DDGGLSIIGNVQ 277 (299)
T ss_pred CCCccCc---------CCCCcCCccCCEEEEECCCCEEEeCcccEEEEec-CCCCEEE-EEeCCC---CCCCCEEEchHH
Confidence 0001221 12334467999999997 8999999999998432 2345797 454321 134679999999
Q ss_pred ccceEEEEeCCCCeEEEEec
Q 015145 392 MGVYHTVFDSGKLRIGFAEA 411 (412)
Q Consensus 392 l~~~yvvfD~e~~rIGfa~~ 411 (412)
||++|+|||++++|||||++
T Consensus 278 l~~~~vvfD~~~~~igfa~~ 297 (299)
T cd05472 278 QQTFRVVYDVAGGRIGFAPG 297 (299)
T ss_pred ccceEEEEECCCCEEeEecC
Confidence 99999999999999999986
No 18
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-42 Score=351.22 Aligned_cols=299 Identities=35% Similarity=0.581 Sum_probs=246.8
Q ss_pred cccccceeeecCccCccceEEecC-C--CCCC-CCC-CCCCCCCceEECCc-E-----------------EEEEEcCce-
Q 015145 2 LNTLERLVLALPHKISVSYLIPAV-P--ISGF-HLQ-SAISLFPAISIRGK-S-----------------CEINYGSGS- 57 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~-~--~c~~-~~~-y~p~~Sst~~~~~~-~-----------------~~i~Y~~gs- 57 (412)
+|||+|.+-+..||||+++||||. + .|.. |.. |+|++|+|++..++ . |.+.|++|+
T Consensus 53 IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~C~y~i~Ygd~~~ 132 (398)
T KOG1339|consen 53 IGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSSCPYSIQYGDGSS 132 (398)
T ss_pred cCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccCCcCceEEEeCCCCc
Confidence 688898888999999999999996 3 4765 555 99999999999773 3 999999965
Q ss_pred EEEEEEEEEEEECC---eEEeeeEEEEEEeecCccccc-CCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEe
Q 015145 58 ISGFFSQDNVEVGD---VVVKDQVFIEATREGSLTFLL-ARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL 133 (412)
Q Consensus 58 ~~G~~~~D~v~lg~---~~~~~~~fg~~~~~~~~~~~~-~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l 133 (412)
+.|.+++|+|++++ ..+.++.|||+..+.+. +.. .+++||||||+..++. ..++...+.. .++||+||
T Consensus 133 ~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~------~~q~~~~~~~-~~~FS~cL 204 (398)
T KOG1339|consen 133 TSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSV------PSQLPSFYNA-INVFSYCL 204 (398)
T ss_pred eeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccc------eeecccccCC-ceeEEEEe
Confidence 89999999999998 77778999999998765 444 6789999999999884 3444443322 23899999
Q ss_pred cCCCCC-CCCcEEEeCCCCCCCeecCceEeeccccc--eeEEEEceEEECCee----eceecCCceEEEcCCCCCcccCH
Q 015145 134 NRDPDA-EEGGEIVFGGVDPKHFKGKHTYVPVTKKG--YWQFELGDILIGNQS----TGVCEGGCAAIVDSGTSLLAGPT 206 (412)
Q Consensus 134 ~~~~~~-~~~G~l~fGg~D~~~~~g~l~~~p~~~~~--~w~v~~~~i~v~~~~----~~~~~~~~~~ivDSGts~i~lP~ 206 (412)
.+.... ...|.|+||++|+.++.+.+.|+|+.+.. +|.+.+.+|+|+++. ...+.....+++||||+++++|.
T Consensus 205 ~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSGTs~t~lp~ 284 (398)
T KOG1339|consen 205 SSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSGTSLTYLPT 284 (398)
T ss_pred CCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceEecCCCCEEEECCcceeeccH
Confidence 987533 25899999999999999999999998877 999999999999843 22233358899999999999999
Q ss_pred HHHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccc
Q 015145 207 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC 286 (412)
Q Consensus 207 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (412)
++|+++.+++++.-
T Consensus 285 ~~y~~i~~~~~~~~------------------------------------------------------------------ 298 (398)
T KOG1339|consen 285 SAYNALREAIGAEV------------------------------------------------------------------ 298 (398)
T ss_pred HHHHHHHHHHHhhe------------------------------------------------------------------
Confidence 99999999997650
Q ss_pred hhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCCCceeeeCCCCCC----CCcEEEEEC-CEEEEeCcccceEEec
Q 015145 287 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPT----MPNVSFTIG-DKIFNLSPEQYILKTG 361 (412)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~~~~~----lp~l~f~~g-g~~~~i~p~~yl~~~~ 361 (412)
++....+.+.++|..... +|.|.|+|+ |+.|.+++++|+++..
T Consensus 299 --------------------------------~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~ 346 (398)
T KOG1339|consen 299 --------------------------------SVVGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKNYLVEVS 346 (398)
T ss_pred --------------------------------eccccCCceeeecccCCCCcccCCcEEEEECCCcEEEeCccceEEEEC
Confidence 001345677889987776 999999999 8999999999999876
Q ss_pred cccccceeeeeeeccCCCCCCCcEEEccccccceEEEEeCC-CCeEEEEec
Q 015145 362 EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSG-KLRIGFAEA 411 (412)
Q Consensus 362 ~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yvvfD~e-~~rIGfa~~ 411 (412)
..... |...+...+.+ +.||||+.|+++++++||.. ++|||||++
T Consensus 347 ~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~ 392 (398)
T KOG1339|consen 347 DGGGV-CLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPA 392 (398)
T ss_pred CCCCc-eeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence 54322 99888764321 68999999999999999999 999999985
No 19
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.6e-40 Score=318.87 Aligned_cols=269 Identities=39% Similarity=0.655 Sum_probs=232.5
Q ss_pred cccccceeeecCccCccceEEecC--CCC--CCCCC--CCCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEe
Q 015145 2 LNTLERLVLALPHKISVSYLIPAV--PIS--GFHLQ--SAISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVK 75 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~--~~c--~~~~~--y~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~ 75 (412)
+|||+|.+....||||+.+||++. ..| ..+.. |++..|+++....+.+++.|++|++.|.+++|++++++..+.
T Consensus 7 iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~~~~~~~~ 86 (283)
T cd05471 7 IGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVTIGGLTIP 86 (283)
T ss_pred ECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEEECCEEEe
Confidence 689999999999999999999998 222 23333 789999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145 76 DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 155 (412)
Q Consensus 76 ~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~ 155 (412)
++.|||+..... .+.....+||||||+...+.....+++.+|.++|.|.+++||+|+.+..+....|.|+|||+|++++
T Consensus 87 ~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~ 165 (283)
T cd05471 87 NQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKY 165 (283)
T ss_pred ceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCcccc
Confidence 999999998754 3445678999999999876556788999999999999999999999853233589999999999999
Q ss_pred ecCceEeeccc--cceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhc
Q 015145 156 KGKHTYVPVTK--KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQY 233 (412)
Q Consensus 156 ~g~l~~~p~~~--~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 233 (412)
.+++.|+|+.. ..+|.+.+++|.+++...........++||||++++++|.+++++|.+++.+...
T Consensus 166 ~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~------------ 233 (283)
T cd05471 166 TGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVS------------ 233 (283)
T ss_pred CCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCccc------------
Confidence 99999999987 8999999999999997422235678899999999999999999999999977610
Q ss_pred hhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHh
Q 015145 234 GDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYI 313 (412)
Q Consensus 234 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 313 (412)
T Consensus 234 -------------------------------------------------------------------------------- 233 (283)
T cd05471 234 -------------------------------------------------------------------------------- 233 (283)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEcccccc
Q 015145 314 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMG 393 (412)
Q Consensus 314 ~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~ 393 (412)
.....+..+|.....+|+|+|+| .+|||.+|||
T Consensus 234 --------~~~~~~~~~~~~~~~~p~i~f~f---------------------------------------~~ilG~~fl~ 266 (283)
T cd05471 234 --------SSDGGYGVDCSPCDTLPDITFTF---------------------------------------LWILGDVFLR 266 (283)
T ss_pred --------ccCCcEEEeCcccCcCCCEEEEE---------------------------------------EEEccHhhhh
Confidence 01234667888888999999999 4799999999
Q ss_pred ceEEEEeCCCCeEEEEe
Q 015145 394 VYHTVFDSGKLRIGFAE 410 (412)
Q Consensus 394 ~~yvvfD~e~~rIGfa~ 410 (412)
++|++||.+++|||||+
T Consensus 267 ~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 267 NYYTVFDLDNNRIGFAP 283 (283)
T ss_pred heEEEEeCCCCEEeecC
Confidence 99999999999999985
No 20
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=3e-40 Score=319.84 Aligned_cols=241 Identities=25% Similarity=0.410 Sum_probs=206.5
Q ss_pred cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCe--EEeeeE
Q 015145 2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDV--VVKDQV 78 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~--~~~~~~ 78 (412)
+|||+|++-+..||||+++||+| +.+.+.|++|+ +.|++++|+|++++. .+.++.
T Consensus 8 iGtP~q~~~v~~DTGSs~~wv~~----------------------~~~~~~Y~dg~~~~G~~~~D~v~~g~~~~~~~~~~ 65 (265)
T cd05476 8 IGTPPQPFSLIVDTGSDLTWTQC----------------------CSYEYSYGDGSSTSGVLATETFTFGDSSVSVPNVA 65 (265)
T ss_pred cCCCCcceEEEecCCCCCEEEcC----------------------CceEeEeCCCceeeeeEEEEEEEecCCCCccCCEE
Confidence 78999999999999999999996 56889999876 899999999999998 789999
Q ss_pred EEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCeecC
Q 015145 79 FIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGK 158 (412)
Q Consensus 79 fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~~g~ 158 (412)
|||+..+.+ +.....+||||||++..+ ++.||..++ ++||+||.+..+....|+|+|||+|++ +.|+
T Consensus 66 Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~fGg~d~~-~~~~ 132 (265)
T cd05476 66 FGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLILGDAADL-GGSG 132 (265)
T ss_pred EEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEEECCcccc-cCCC
Confidence 999998754 556678999999997665 788998887 899999987543445899999999999 9999
Q ss_pred ceEeeccc----cceeEEEEceEEECCeeece--------ecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecch
Q 015145 159 HTYVPVTK----KGYWQFELGDILIGNQSTGV--------CEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAEC 226 (412)
Q Consensus 159 l~~~p~~~----~~~w~v~~~~i~v~~~~~~~--------~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~ 226 (412)
+.|+|+.. ..+|.+++++|+++++.+.+ ......++|||||+++++|++++
T Consensus 133 l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~----------------- 195 (265)
T cd05476 133 VVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY----------------- 195 (265)
T ss_pred ceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc-----------------
Confidence 99999975 58999999999999998742 24567899999999999998621
Q ss_pred hhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhH
Q 015145 227 KLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTK 306 (412)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 306 (412)
T Consensus 196 -------------------------------------------------------------------------------- 195 (265)
T cd05476 196 -------------------------------------------------------------------------------- 195 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcE
Q 015145 307 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 385 (412)
Q Consensus 307 ~~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~g-g~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~ 385 (412)
|+|+|.|+ +++|.++|++|+.+.. ....|+..+. . ...+.|
T Consensus 196 -------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~C~~~~~-~----~~~~~~ 237 (265)
T cd05476 196 -------------------------------PDLTLHFDGGADLELPPENYFVDVG--EGVVCLAILS-S----SSGGVS 237 (265)
T ss_pred -------------------------------CCEEEEECCCCEEEeCcccEEEECC--CCCEEEEEec-C----CCCCcE
Confidence 67999998 8999999999998533 4468975443 2 145789
Q ss_pred EEccccccceEEEEeCCCCeEEEEecC
Q 015145 386 ILGDVFMGVYHTVFDSGKLRIGFAEAA 412 (412)
Q Consensus 386 iLG~~fl~~~yvvfD~e~~rIGfa~~~ 412 (412)
|||++|||++|++||.+++|||||++.
T Consensus 238 ilG~~fl~~~~~vFD~~~~~iGfa~~~ 264 (265)
T cd05476 238 ILGNIQQQNFLVEYDLENSRLGFAPAD 264 (265)
T ss_pred EEChhhcccEEEEEECCCCEEeeecCC
Confidence 999999999999999999999999873
No 21
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.7e-39 Score=314.73 Aligned_cols=251 Identities=20% Similarity=0.296 Sum_probs=206.8
Q ss_pred cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECC----eEEee
Q 015145 2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGD----VVVKD 76 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~----~~~~~ 76 (412)
+|||+|.+....||||+++||+|...|... ++.|++.|++|+ +.|.+++|+|++++ ..+.+
T Consensus 9 iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c--------------~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~ 74 (273)
T cd05475 9 IGNPPKPYFLDIDTGSDLTWLQCDAPCTGC--------------QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPR 74 (273)
T ss_pred cCCCCeeEEEEEccCCCceEEeCCCCCCCC--------------cCccEeEeCCCCceEEEEEEEEEEEeecCCCcccCC
Confidence 689999999999999999999985445322 467999999765 89999999999963 46778
Q ss_pred eEEEEEEeecCcc-cccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEecCCCCCCCCcEEEeCCCCCCCe
Q 015145 77 QVFIEATREGSLT-FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 155 (412)
Q Consensus 77 ~~fg~~~~~~~~~-~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l~~~~~~~~~G~l~fGg~D~~~~ 155 (412)
+.|||+....+.. ......+||||||+...+ ++.+|.++++| +++||+||.+.. +|.|+|| |..++
T Consensus 75 ~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~~----~g~l~~G--~~~~~ 141 (273)
T cd05475 75 IAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSNG----GGFLFFG--DDLVP 141 (273)
T ss_pred EEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCCC----CeEEEEC--CCCCC
Confidence 9999998764432 234568999999997665 89999999999 899999998742 6999998 56677
Q ss_pred ecCceEeecccc---ceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhh
Q 015145 156 KGKHTYVPVTKK---GYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQ 232 (412)
Q Consensus 156 ~g~l~~~p~~~~---~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~ 232 (412)
.|++.|+|+.+. .+|.|.+.+|+|+++... .....++|||||+++++|+++|
T Consensus 142 ~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--~~~~~~ivDTGTt~t~lp~~~y----------------------- 196 (273)
T cd05475 142 SSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--GKGLEVVFDSGSSYTYFNAQAY----------------------- 196 (273)
T ss_pred CCCeeecccccCCCCCeEEEeEeEEEECCEECc--CCCceEEEECCCceEEcCCccc-----------------------
Confidence 899999999864 899999999999998653 4567899999999999998732
Q ss_pred chhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHH
Q 015145 233 YGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSY 312 (412)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 312 (412)
T Consensus 197 -------------------------------------------------------------------------------- 196 (273)
T cd05475 197 -------------------------------------------------------------------------------- 196 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccCCCCCCCceeeeCCCCCCCCcEEEEECC----EEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEc
Q 015145 313 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD----KIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILG 388 (412)
Q Consensus 313 ~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg----~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG 388 (412)
+|+|+|.|++ ++++|+|++|++... ....|+..+...+. ...+.||||
T Consensus 197 ------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~--~~~~Cl~~~~~~~~--~~~~~~ilG 248 (273)
T cd05475 197 ------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE--KGNVCLGILNGSEI--GLGNTNIIG 248 (273)
T ss_pred ------------------------cccEEEEECCCCceeEEEeCCCceEEEcC--CCCEEEEEecCCCc--CCCceEEEC
Confidence 3679999986 799999999998743 23479877754321 234689999
Q ss_pred cccccceEEEEeCCCCeEEEEecC
Q 015145 389 DVFMGVYHTVFDSGKLRIGFAEAA 412 (412)
Q Consensus 389 ~~fl~~~yvvfD~e~~rIGfa~~~ 412 (412)
+.|||++|++||++++|||||++.
T Consensus 249 ~~~l~~~~~vfD~~~~riGfa~~~ 272 (273)
T cd05475 249 DISMQGLMVIYDNEKQQIGWVRSD 272 (273)
T ss_pred ceEEEeeEEEEECcCCEeCcccCC
Confidence 999999999999999999999874
No 22
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=327.50 Aligned_cols=292 Identities=18% Similarity=0.233 Sum_probs=224.9
Q ss_pred cccccceeeecCccCccceEEecC--CCCC--CCCCCCCCCCCceEEC--------------------CcEEEEEEcCce
Q 015145 2 LNTLERLVLALPHKISVSYLIPAV--PISG--FHLQSAISLFPAISIR--------------------GKSCEINYGSGS 57 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~--~~c~--~~~~y~p~~Sst~~~~--------------------~~~~~i~Y~~gs 57 (412)
+|||+|.+.+..||||+++||+|. ..|. .+..|||++|+|++.. .+.|.+.|++|+
T Consensus 91 iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~Ygdgs 170 (431)
T PLN03146 91 IGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYSYGDGS 170 (431)
T ss_pred cCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEEeCCCC
Confidence 689999999999999999999996 3565 4578999999999864 268999999998
Q ss_pred -EEEEEEEEEEEECC-----eEEeeeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEE
Q 015145 58 -ISGFFSQDNVEVGD-----VVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSF 131 (412)
Q Consensus 58 -~~G~~~~D~v~lg~-----~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl 131 (412)
..|.+++|+++|++ ..+.++.|||++...+. |. ...+||||||+...+ ++.||..+ +. ++||+
T Consensus 171 ~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql~~~--~~-~~FSy 239 (431)
T PLN03146 171 FTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQLGSS--IG-GKFSY 239 (431)
T ss_pred ceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHhhHh--hC-CcEEE
Confidence 69999999999987 45889999999876542 32 257899999998776 77887653 44 49999
Q ss_pred EecCCC-CCCCCcEEEeCCCCCCCeec-CceEeeccc---cceeEEEEceEEECCeeeceecC------CceEEEcCCCC
Q 015145 132 WLNRDP-DAEEGGEIVFGGVDPKHFKG-KHTYVPVTK---KGYWQFELGDILIGNQSTGVCEG------GCAAIVDSGTS 200 (412)
Q Consensus 132 ~l~~~~-~~~~~G~l~fGg~D~~~~~g-~l~~~p~~~---~~~w~v~~~~i~v~~~~~~~~~~------~~~~ivDSGts 200 (412)
||.+.. +....|.|+|||. .++.| .+.|+|+.. ..+|.|.+++|+||++.+.+... ...++|||||+
T Consensus 240 cL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt 317 (431)
T PLN03146 240 CLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTT 317 (431)
T ss_pred ECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCcc
Confidence 997532 2234799999984 44544 489999963 47899999999999998764322 24689999999
Q ss_pred CcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeecccccc
Q 015145 201 LLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSA 280 (412)
Q Consensus 201 ~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (412)
++++|+++|+++.+++... +..+ +
T Consensus 318 ~t~Lp~~~y~~l~~~~~~~----------~~~~-------------~--------------------------------- 341 (431)
T PLN03146 318 LTLLPSDFYSELESAVEEA----------IGGE-------------R--------------------------------- 341 (431)
T ss_pred ceecCHHHHHHHHHHHHHH----------hccc-------------c---------------------------------
Confidence 9999999999998877432 0000 0
Q ss_pred CCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCCCceeeeCCCC---CCCCcEEEEECCEEEEeCcccce
Q 015145 281 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI---PTMPNVSFTIGDKIFNLSPEQYI 357 (412)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~~~---~~lp~l~f~~gg~~~~i~p~~yl 357 (412)
... ......+|... ..+|.|+|+|+|.++.|+|++|+
T Consensus 342 ---------------------------------------~~~-~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~~~~~ 381 (431)
T PLN03146 342 ---------------------------------------VSD-PQGLLSLCYSSTSDIKLPIITAHFTGADVKLQPLNTF 381 (431)
T ss_pred ---------------------------------------CCC-CCCCCCccccCCCCCCCCeEEEEECCCeeecCcceeE
Confidence 000 00112345321 36899999999999999999999
Q ss_pred EEeccccccceeeeeeeccCCCCCCCcEEEccccccceEEEEeCCCCeEEEEec
Q 015145 358 LKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411 (412)
Q Consensus 358 ~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~ 411 (412)
+.... ...|+..+. . .+.||||+.|||++|++||++++|||||++
T Consensus 382 ~~~~~--~~~Cl~~~~-~------~~~~IlG~~~q~~~~vvyDl~~~~igFa~~ 426 (431)
T PLN03146 382 VKVSE--DLVCFAMIP-T------SSIAIFGNLAQMNFLVGYDLESKTVSFKPT 426 (431)
T ss_pred EEcCC--CcEEEEEec-C------CCceEECeeeEeeEEEEEECCCCEEeeecC
Confidence 97543 357975432 1 246999999999999999999999999986
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=8.8e-37 Score=309.06 Aligned_cols=308 Identities=15% Similarity=0.174 Sum_probs=225.6
Q ss_pred ccccce-eeecCccCccceEEecC--------------CCCCCCCCCCCCC------CCceEECCcEEEEE-EcCce-EE
Q 015145 3 NTLERL-VLALPHKISVSYLIPAV--------------PISGFHLQSAISL------FPAISIRGKSCEIN-YGSGS-IS 59 (412)
Q Consensus 3 ~t~~~~-~~~~p~t~s~~~wvp~~--------------~~c~~~~~y~p~~------Sst~~~~~~~~~i~-Y~~gs-~~ 59 (412)
+||--. +-+..||||..+|++|. ..|..+..|++.+ ++.+....+.+... |++|+ ..
T Consensus 3 ~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~t~ 82 (362)
T cd05489 3 ITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECAT 82 (362)
T ss_pred ccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcEee
Confidence 344344 67889999999999554 3566666676542 22333334556544 77886 79
Q ss_pred EEEEEEEEEECC--------eEEeeeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEE
Q 015145 60 GFFSQDNVEVGD--------VVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSF 131 (412)
Q Consensus 60 G~~~~D~v~lg~--------~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl 131 (412)
|.+++|+++++. ..+.++.|||+.......+ ....|||||||+..++ ++.||..++. .+++||+
T Consensus 83 G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~FS~ 154 (362)
T cd05489 83 GDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKFAL 154 (362)
T ss_pred EEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcceEE
Confidence 999999999973 3688999999987532222 3347999999999888 6778887765 5799999
Q ss_pred EecCCCCCCCCcEEEeCCCCCCCee------cCceEeecccc----ceeEEEEceEEECCeeecee--------cCCceE
Q 015145 132 WLNRDPDAEEGGEIVFGGVDPKHFK------GKHTYVPVTKK----GYWQFELGDILIGNQSTGVC--------EGGCAA 193 (412)
Q Consensus 132 ~l~~~~~~~~~G~l~fGg~D~~~~~------g~l~~~p~~~~----~~w~v~~~~i~v~~~~~~~~--------~~~~~~ 193 (412)
||.+.. ...|.|+|||.++.++. +.+.|+|+.+. .+|.|++++|+||++.+.+. .....+
T Consensus 155 CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~ 232 (362)
T cd05489 155 CLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGV 232 (362)
T ss_pred EeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcE
Confidence 998753 24799999999988774 78999999754 79999999999999987642 223569
Q ss_pred EEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeee
Q 015145 194 IVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVV 273 (412)
Q Consensus 194 ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 273 (412)
+|||||++++||+++|+++.+++.++ ++++. ..+
T Consensus 233 iiDSGTs~t~lp~~~y~~l~~a~~~~----------~~~~~----------~~~-------------------------- 266 (362)
T cd05489 233 KLSTVVPYTVLRSDIYRAFTQAFAKA----------TARIP----------RVP-------------------------- 266 (362)
T ss_pred EEecCCceEEECHHHHHHHHHHHHHH----------hcccC----------cCC--------------------------
Confidence 99999999999999999999988543 00000 000
Q ss_pred eccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECC--EEEEe
Q 015145 274 EKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD--KIFNL 351 (412)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~ipC~~~~~lp~l~f~~gg--~~~~i 351 (412)
. ...+.+.|..... ...|+....+|+|+|+|+| +++.|
T Consensus 267 --------------------------------~---~~~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g~g~~~~l 306 (362)
T cd05489 267 --------------------------------A---AAVFPELCYPASA-----LGNTRLGYAVPAIDLVLDGGGVNWTI 306 (362)
T ss_pred --------------------------------C---CCCCcCccccCCC-----cCCcccccccceEEEEEeCCCeEEEE
Confidence 0 0001135554332 1244445689999999976 99999
Q ss_pred CcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEEEEeCCCCeEEEEec
Q 015145 352 SPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 411 (412)
Q Consensus 352 ~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yvvfD~e~~rIGfa~~ 411 (412)
+|++|+++..+ ..+|+ +|...+.. ..+.||||+.|||++|++||.+++|||||++
T Consensus 307 ~~~ny~~~~~~--~~~Cl-~f~~~~~~--~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 307 FGANSMVQVKG--GVACL-AFVDGGSE--PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred cCCceEEEcCC--CcEEE-EEeeCCCC--CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999998643 45895 56654321 2468999999999999999999999999975
No 24
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.69 E-value=2.4e-16 Score=142.10 Aligned_cols=153 Identities=22% Similarity=0.385 Sum_probs=103.6
Q ss_pred eeEEEEceEEECCeeeceecC-------CceEEEcCCCCCcccCHHHHHHHHHHhCCCceeecchhhhhhhchhhHHHHH
Q 015145 169 YWQFELGDILIGNQSTGVCEG-------GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLL 241 (412)
Q Consensus 169 ~w~v~~~~i~v~~~~~~~~~~-------~~~~ivDSGts~i~lP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (412)
+|.|.+.+|+||++.+.+... ...++|||||++++||+++|+.+.+++... +...
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~----------~~~~-------- 62 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQ----------MGAP-------- 62 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHH----------HHTC--------
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHH----------hhhc--------
Confidence 478999999999999876543 467999999999999999999999998433 0000
Q ss_pred hhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCC
Q 015145 242 VSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 321 (412)
Q Consensus 242 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~ 321 (412)
+ .+.+.-...-.++|.+.+
T Consensus 63 --~-----------------------------------------------------------~~~~~~~~~~~~~Cy~~~ 81 (161)
T PF14541_consen 63 --G-----------------------------------------------------------VSREAPPFSGFDLCYNLS 81 (161)
T ss_dssp --T-------------------------------------------------------------CEE---TT-S-EEEGG
T ss_pred --c-----------------------------------------------------------cccccccCCCCCceeecc
Confidence 0 000000112234677665
Q ss_pred CCCCceeeeCCCCCCCCcEEEEEC-CEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEEEEe
Q 015145 322 NPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 400 (412)
Q Consensus 322 ~~~~~~~ipC~~~~~lp~l~f~~g-g~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yvvfD 400 (412)
... .+ .....+|+|+|+|. |.+++|+|++|++... ...+|...... .....+..|||..+|++++++||
T Consensus 82 ~~~----~~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~--~~~~Cla~~~~---~~~~~~~~viG~~~~~~~~v~fD 151 (161)
T PF14541_consen 82 SFG----VN-RDWAKFPTITLHFEGGADLTLPPENYFVQVS--PGVFCLAFVPS---DADDDGVSVIGNFQQQNYHVVFD 151 (161)
T ss_dssp CS-----EE-TTEESS--EEEEETTSEEEEE-HHHHEEEEC--TTEEEESEEEE---TSTTSSSEEE-HHHCCTEEEEEE
T ss_pred ccc----cc-cccccCCeEEEEEeCCcceeeeccceeeecc--CCCEEEEEEcc---CCCCCCcEEECHHHhcCcEEEEE
Confidence 521 01 12357999999998 7999999999999876 34689865543 12345788999999999999999
Q ss_pred CCCCeEEEEe
Q 015145 401 SGKLRIGFAE 410 (412)
Q Consensus 401 ~e~~rIGfa~ 410 (412)
++++||||+|
T Consensus 152 l~~~~igF~~ 161 (161)
T PF14541_consen 152 LENGRIGFAP 161 (161)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCEEEEeC
Confidence 9999999997
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.66 E-value=5.4e-16 Score=129.97 Aligned_cols=100 Identities=37% Similarity=0.424 Sum_probs=88.3
Q ss_pred cccccceeeecCccCccceEEecCC----CCCCCCCC-CCCCCCceEECCcEEEEEEcCceEEEEEEEEEEEECCeEEee
Q 015145 2 LNTLERLVLALPHKISVSYLIPAVP----ISGFHLQS-AISLFPAISIRGKSCEINYGSGSISGFFSQDNVEVGDVVVKD 76 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~~----~c~~~~~y-~p~~Sst~~~~~~~~~i~Y~~gs~~G~~~~D~v~lg~~~~~~ 76 (412)
+|||+|.+....||||+++||++.. .|..+..| +|+.|++++..++.+.+.|++|++.|.++.|+|++++..+.+
T Consensus 5 vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~~~~~~ 84 (109)
T cd05470 5 IGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGDIEVVG 84 (109)
T ss_pred eCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECCEEECC
Confidence 6899999999999999999999872 23345566 999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeecCcccccCCccEEEec
Q 015145 77 QVFIEATREGSLTFLLARFDGIIGL 101 (412)
Q Consensus 77 ~~fg~~~~~~~~~~~~~~~dGilGL 101 (412)
+.||++....+..+.....+|||||
T Consensus 85 ~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 85 QAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEEEEEEecCCccccccccccccCC
Confidence 9999999987654555678999997
No 26
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.65 E-value=2.4e-15 Score=136.37 Aligned_cols=130 Identities=24% Similarity=0.273 Sum_probs=101.4
Q ss_pred cccccceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEEC----------------------CcEEEEEEcCce-E
Q 015145 2 LNTLERLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIR----------------------GKSCEINYGSGS-I 58 (412)
Q Consensus 2 ~~t~~~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~----------------------~~~~~i~Y~~gs-~ 58 (412)
+|||++.+-...||+|..+|++| ....|+|.+|+|++.. .+.+.+.|++++ .
T Consensus 7 iGtP~~~~~lvvDtgs~l~W~~C-----~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y~~~y~~~s~~ 81 (164)
T PF14543_consen 7 IGTPPQPFSLVVDTGSDLTWVQC-----PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPYSQSYGDGSSS 81 (164)
T ss_dssp CTCTTEEEEEEEETT-SSEEEET---------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEEEEEETTTEEE
T ss_pred eCCCCceEEEEEECCCCceEEcC-----CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccceeecCCCccc
Confidence 68999999999999999999999 6778999999998861 148999999988 7
Q ss_pred EEEEEEEEEEECC-----eEEeeeEEEEEEeecCcccccCCccEEEeccCCccccCCCCchHHHHHHcCCCCCCeEEEEe
Q 015145 59 SGFFSQDNVEVGD-----VVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL 133 (412)
Q Consensus 59 ~G~~~~D~v~lg~-----~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~Fsl~l 133 (412)
.|.+++|+++++. ..+.++.|||+....+.. ...+||||||+...+ ++.||.++ ..+.||+||
T Consensus 82 ~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~---~~~~GilGLg~~~~S------l~sQl~~~---~~~~FSyCL 149 (164)
T PF14543_consen 82 SGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF---YGADGILGLGRGPLS------LPSQLASS---SGNKFSYCL 149 (164)
T ss_dssp EEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS---TTEEEEEE-SSSTTS------HHHHHHHH-----SEEEEEB
T ss_pred cCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC---cCCCcccccCCCccc------HHHHHHHh---cCCeEEEEC
Confidence 9999999999975 567889999999876432 277999999998888 99999998 578999999
Q ss_pred cCCCCCCCCcEEEeCC
Q 015145 134 NRDPDAEEGGEIVFGG 149 (412)
Q Consensus 134 ~~~~~~~~~G~l~fGg 149 (412)
.+ .+....|.|+||+
T Consensus 150 ~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 150 PS-SSPSSSGFLSFGD 164 (164)
T ss_dssp -S--SSSSEEEEEECS
T ss_pred CC-CCCCCCEEEEeCc
Confidence 98 2344589999995
No 27
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=98.16 E-value=1.8e-06 Score=59.37 Aligned_cols=38 Identities=26% Similarity=0.628 Sum_probs=36.3
Q ss_pred ccchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCC
Q 015145 284 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 321 (412)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~ 321 (412)
..|++|+++|++++++|.++.|+++|.+.+++.|.++|
T Consensus 2 ~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 2 DECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred CcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 36999999999999999999999999999999999886
No 28
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=98.01 E-value=2.2e-06 Score=57.75 Aligned_cols=35 Identities=51% Similarity=0.926 Sum_probs=33.5
Q ss_pred ecchhhhhhhchhhHHHHHhhCCCccchhhccccc
Q 015145 223 SAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 257 (412)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 257 (412)
+++|+.+|++|++.|++++.++++|+.+|.+.++|
T Consensus 1 ~~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 1 SDECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 36899999999999999999999999999999998
No 29
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.00097 Score=63.21 Aligned_cols=104 Identities=30% Similarity=0.464 Sum_probs=75.8
Q ss_pred HHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCCcceeccceeeeeeccccccCCcccch
Q 015145 208 VVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCS 287 (412)
Q Consensus 208 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (412)
.+....+.+... ...+|+.++++|.+.|++.+.++.+|+.+|...+.|+-. +... .-.+. ++.+ ...|.
T Consensus 63 ~l~~~Ckkl~~~--~~~~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~-~~~~--~~~~~----~~~~--~~~C~ 131 (218)
T KOG1340|consen 63 DLHAECKKLPKA--IPFECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSAS-AGPV--SEVFA----SQPA--AGECE 131 (218)
T ss_pred HHHHHHHHhccc--chHHHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcc-cchh--hhhhh----hccc--ccccH
Confidence 344446666554 222899999999999999999999999999999999961 1111 11111 1222 67899
Q ss_pred hhhhHHHHHHhhhhh-hhhHHHHHHHhhhhccCCCC
Q 015145 288 ACEMAVVWVQNQLKQ-KQTKEKVLSYINELCDSLPN 322 (412)
Q Consensus 288 ~~~~~~~~~~~~~~~-~~t~~~~~~~~~~~c~~~~~ 322 (412)
.|-++|.++...+.. +.++..+.....+.|-.++.
T Consensus 132 ~C~~~V~~~~~~l~d~~~~k~~~~~~~~~~ck~l~~ 167 (218)
T KOG1340|consen 132 LCRETVTEADTKLQDKPKTKGKIVSLLLKSCKSLPN 167 (218)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHhhccCCcc
Confidence 999999999999998 77777777777777755543
No 30
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=95.65 E-value=0.0084 Score=45.91 Aligned_cols=49 Identities=41% Similarity=0.755 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhccccc
Q 015145 207 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 257 (412)
Q Consensus 207 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 257 (412)
.....+-..++. .+.+.|+.+++.|.+.+++++.++.+|+.+|+..++|
T Consensus 28 ~~~~~~C~~~~~--~~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 28 KALEKVCKKLPK--SLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 456666667763 3789999999999999999999999999999999988
No 31
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=94.72 E-value=0.03 Score=42.76 Aligned_cols=37 Identities=32% Similarity=0.697 Sum_probs=35.9
Q ss_pred cchhhhhHHHHHHhhhhhhhhHHHHHHHhhhhccCCC
Q 015145 285 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 321 (412)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~ 321 (412)
.|..|+++|..++..+.++.+++++.+.+.++|..+|
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~ 38 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP 38 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence 6999999999999999999999999999999999998
No 32
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=94.01 E-value=0.12 Score=41.12 Aligned_cols=81 Identities=15% Similarity=0.260 Sum_probs=56.4
Q ss_pred cceeeecCccCccceEEecC--CCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCeEEeeeEEEEE
Q 015145 6 ERLVLALPHKISVSYLIPAV--PISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFIEA 82 (412)
Q Consensus 6 ~~~~~~~p~t~s~~~wvp~~--~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~~~~~~fg~~ 82 (412)
.+.+-...|||++..|++.. ..+.. . ........+...+|. .......+.+++|+..++++.+..+
T Consensus 11 ~~~~~~llDTGa~~s~i~~~~~~~l~~--~---------~~~~~~~~~~~~~G~~~~~~~~~~~i~ig~~~~~~~~~~v~ 79 (96)
T cd05483 11 GQPVRFLLDTGASTTVISEELAERLGL--P---------LTLGGKVTVQTANGRVRAARVRLDSLQIGGITLRNVPAVVL 79 (96)
T ss_pred CEEEEEEEECCCCcEEcCHHHHHHcCC--C---------ccCCCcEEEEecCCCccceEEEcceEEECCcEEeccEEEEe
Confidence 35567789999999999985 22221 0 112234556777777 4556669999999999999888777
Q ss_pred EeecCcccccCCccEEEeccC
Q 015145 83 TREGSLTFLLARFDGIIGLGF 103 (412)
Q Consensus 83 ~~~~~~~~~~~~~dGilGLg~ 103 (412)
..... +.+||||+.+
T Consensus 80 d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 80 PGDAL------GVDGLLGMDF 94 (96)
T ss_pred CCccc------CCceEeChHH
Confidence 65421 5699999863
No 33
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=91.77 E-value=0.82 Score=39.33 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=22.2
Q ss_pred CcEEEccccccceEEEEeCCCCeEE
Q 015145 383 PLWILGDVFMGVYHTVFDSGKLRIG 407 (412)
Q Consensus 383 ~~~iLG~~fl~~~yvvfD~e~~rIG 407 (412)
...|||..||+.+-.+.|+.+++|-
T Consensus 99 ~d~ILG~d~L~~~~~~ID~~~~~i~ 123 (124)
T cd05479 99 VDFLIGLDMLKRHQCVIDLKENVLR 123 (124)
T ss_pred cCEEecHHHHHhCCeEEECCCCEEE
Confidence 3459999999999999999999874
No 34
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=91.12 E-value=2.1 Score=36.75 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=29.1
Q ss_pred cccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHH
Q 015145 165 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212 (412)
Q Consensus 165 ~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l 212 (412)
.+.+++.++ +.++|++.. ++||||++.+.++.+..+++
T Consensus 7 ~~~g~~~v~---~~InG~~~~-------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 7 DGDGHFYAT---GRVNGRNVR-------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred cCCCeEEEE---EEECCEEEE-------EEEECCCCcEEcCHHHHHHc
Confidence 345566554 677888653 99999999999999987764
No 35
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=90.50 E-value=0.23 Score=47.27 Aligned_cols=48 Identities=29% Similarity=0.536 Sum_probs=41.6
Q ss_pred HHhCCCceeecchhhhhhhchhhHHHHHhhCCCccchhhcccccccCC
Q 015145 214 HAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNG 261 (412)
Q Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 261 (412)
...+.-+.+.+.||..|++|.+.+++++..++.|..+|.+.+.|+.+.
T Consensus 160 ~~ck~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~~~~ 207 (218)
T KOG1340|consen 160 KSCKSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACPPAA 207 (218)
T ss_pred hhccCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCCccc
Confidence 334555667788999999999999999999999999999999999654
No 36
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=85.60 E-value=2.4 Score=37.21 Aligned_cols=27 Identities=22% Similarity=0.221 Sum_probs=24.2
Q ss_pred cEEEccccccceEEEEeCCCCeEEEEe
Q 015145 384 LWILGDVFMGVYHTVFDSGKLRIGFAE 410 (412)
Q Consensus 384 ~~iLG~~fl~~~yvvfD~e~~rIGfa~ 410 (412)
..|||.+||+.+....|..+++|-|-.
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 359999999999999999999998854
No 37
>PF13650 Asp_protease_2: Aspartyl protease
Probab=81.22 E-value=2 Score=33.59 Aligned_cols=29 Identities=10% Similarity=0.322 Sum_probs=24.1
Q ss_pred EEECCeeeceecCCceEEEcCCCCCcccCHHHHHHH
Q 015145 177 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212 (412)
Q Consensus 177 i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l 212 (412)
++++|+++. +++|||++...++.+.++++
T Consensus 3 v~vng~~~~-------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR-------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE-------EEEcCCCCcEEECHHHHHHc
Confidence 566777653 99999999999999988776
No 38
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=76.08 E-value=3.5 Score=33.08 Aligned_cols=30 Identities=10% Similarity=0.237 Sum_probs=25.6
Q ss_pred eEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHH
Q 015145 176 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212 (412)
Q Consensus 176 ~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l 212 (412)
.++|+|+++. ++||||++...++.+.+..+
T Consensus 4 ~~~Ing~~i~-------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-------EEEcCCcceEEeCHHHHHHh
Confidence 4677888774 99999999999999988865
No 39
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=74.97 E-value=25 Score=36.04 Aligned_cols=144 Identities=19% Similarity=0.229 Sum_probs=85.4
Q ss_pred EEEcCceEEEEEEEEEEEECCeEEeeeEEEEEEeec-----------C---cccccCCccEEEeccCCccccC-------
Q 015145 51 INYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREG-----------S---LTFLLARFDGIIGLGFREIAVG------- 109 (412)
Q Consensus 51 i~Y~~gs~~G~~~~D~v~lg~~~~~~~~fg~~~~~~-----------~---~~~~~~~~dGilGLg~~~~s~~------- 109 (412)
..|++|..=|-+.+-.|+|++....++.+.++.+.. + ........+||||+|.-....+
T Consensus 82 ~~F~sgytWGsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa 161 (370)
T PF11925_consen 82 AQFASGYTWGSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSA 161 (370)
T ss_pred hhccCcccccceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhccc
Confidence 578888877999999999999877777777665431 0 1122346799999998543221
Q ss_pred ---------CC---CchHHHHHHcCCCCCCeEEEEecCCC------------CCCCCcEEEeCCCCCC--CeecCceEee
Q 015145 110 ---------DA---VPVWDNMVEQGLVSEEVFSFWLNRDP------------DAEEGGEIVFGGVDPK--HFKGKHTYVP 163 (412)
Q Consensus 110 ---------~~---~~~~~~L~~qg~i~~~~Fsl~l~~~~------------~~~~~G~l~fGg~D~~--~~~g~l~~~p 163 (412)
.. ++..-.+.+| +..|+..+-.+.++ .....|.|+||=--.+ ...+.....+
T Consensus 162 ~~~~YY~C~~~~sCt~t~v~~~~Q--V~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~ 239 (370)
T PF11925_consen 162 LPGNYYSCPSGGSCTSTTVPLAQQ--VANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLT 239 (370)
T ss_pred CCCceEECCCCCCeecccchhhhc--ccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEe
Confidence 01 0111122222 55666666443322 2345899999832211 1223355556
Q ss_pred ccccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHH
Q 015145 164 VTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTP 207 (412)
Q Consensus 164 ~~~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~ 207 (412)
..+.++... .++|+... ...||||+.-.++|+.
T Consensus 240 ~~~~G~~tt-----~~~G~t~~------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 240 TDSNGDFTT-----TFNGQTYS------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred ecCCceEEE-----EecCceee------eeeEecCCceeeccCC
Confidence 666665332 34555442 2599999999999965
No 40
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=74.56 E-value=5 Score=31.06 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=25.3
Q ss_pred eEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHH
Q 015145 176 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212 (412)
Q Consensus 176 ~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l 212 (412)
.+.+++..+. +++|||++..+++....+.+
T Consensus 12 ~~~I~g~~~~-------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK-------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE-------EEEeCCCcceecCHHHHHHh
Confidence 4567776664 99999999999999998887
No 41
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=72.26 E-value=5.4 Score=31.41 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=24.0
Q ss_pred eEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHH
Q 015145 176 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212 (412)
Q Consensus 176 ~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l 212 (412)
.+.++++++. ++||||++...++.+..+.+
T Consensus 6 ~v~i~~~~~~-------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPVR-------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEEE-------EEEECCCCcEEcCHHHHHHc
Confidence 4667776654 99999999999999877665
No 42
>PF13650 Asp_protease_2: Aspartyl protease
Probab=69.87 E-value=38 Score=26.09 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=46.3
Q ss_pred ceeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCce-EEEEEEEEEEEECCeEEeeeEEEEEEee
Q 015145 7 RLVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGS-ISGFFSQDNVEVGDVVVKDQVFIEATRE 85 (412)
Q Consensus 7 ~~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs-~~G~~~~D~v~lg~~~~~~~~fg~~~~~ 85 (412)
+.+-...|||++...+...-.-.... .+... .....+.-.+|. .......+.+++|+..+.+..|-...
T Consensus 8 ~~~~~liDTGa~~~~i~~~~~~~l~~--~~~~~------~~~~~~~~~~g~~~~~~~~~~~i~ig~~~~~~~~~~v~~-- 77 (90)
T PF13650_consen 8 KPVRFLIDTGASISVISRSLAKKLGL--KPRPK------SVPISVSGAGGSVTVYRGRVDSITIGGITLKNVPFLVVD-- 77 (90)
T ss_pred EEEEEEEcCCCCcEEECHHHHHHcCC--CCcCC------ceeEEEEeCCCCEEEEEEEEEEEEECCEEEEeEEEEEEC--
Confidence 35567889999877666542111111 11111 001223334444 34556666899999998888876665
Q ss_pred cCcccccCCccEEEecc
Q 015145 86 GSLTFLLARFDGIIGLG 102 (412)
Q Consensus 86 ~~~~~~~~~~dGilGLg 102 (412)
.....+||||+-
T Consensus 78 -----~~~~~~~iLG~d 89 (90)
T PF13650_consen 78 -----LGDPIDGILGMD 89 (90)
T ss_pred -----CCCCCEEEeCCc
Confidence 123558999974
No 43
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=68.07 E-value=6 Score=31.57 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=24.6
Q ss_pred EEECCeeeceecCCceEEEcCCCCCcccCHHHHHHH
Q 015145 177 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212 (412)
Q Consensus 177 i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l 212 (412)
+.+||+++. .++|||++.+.++....+.+
T Consensus 3 v~InG~~~~-------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------EEEECCCCeEEECHHHhhhc
Confidence 567777764 99999999999999988875
No 44
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=51.44 E-value=10 Score=30.56 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=21.5
Q ss_pred eEEECCeeeceecCCceEEEcCCCCCcccCHHHH
Q 015145 176 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 209 (412)
Q Consensus 176 ~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~ 209 (412)
.|.++++.+. +++|||+....++...+
T Consensus 9 ~v~i~g~~i~-------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKIK-------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEEE-------EEEETTBSSEEESSGGS
T ss_pred EEeECCEEEE-------EEEecCCCcceeccccc
Confidence 3566777664 99999999999998744
No 45
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=47.17 E-value=45 Score=31.50 Aligned_cols=44 Identities=30% Similarity=0.487 Sum_probs=28.1
Q ss_pred CCcEEEEECCEEEEeCcccceEEeccccccceeeeeeeccCCCCCCCcEEEccccccceEEEEeCC
Q 015145 337 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSG 402 (412)
Q Consensus 337 lp~l~f~~gg~~~~i~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~yvvfD~e 402 (412)
.+++.+.+++..|.|| ++++.+ .+-.++||.+|+|.|+=-...+
T Consensus 67 ~~~~~i~I~~~~F~IP---~iYq~~-------------------~g~d~IlG~NF~r~y~Pfiq~~ 110 (201)
T PF02160_consen 67 AKNGKIQIADKIFRIP---TIYQQE-------------------SGIDIILGNNFLRLYEPFIQTE 110 (201)
T ss_pred ecCceEEEccEEEecc---EEEEec-------------------CCCCEEecchHHHhcCCcEEEc
Confidence 4568888888888874 222111 2345799999999876444443
No 46
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=46.78 E-value=19 Score=29.32 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.0
Q ss_pred ceEEEcCCCCCcccCHHHHHHHH
Q 015145 191 CAAIVDSGTSLLAGPTPVVTEIN 213 (412)
Q Consensus 191 ~~~ivDSGts~i~lP~~~~~~l~ 213 (412)
..+.+|||++...+|...++.+-
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 34999999999999999888765
No 47
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=44.26 E-value=40 Score=31.97 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=28.5
Q ss_pred ccceeEEEEceEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHH
Q 015145 166 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212 (412)
Q Consensus 166 ~~~~w~v~~~~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l 212 (412)
.++++.+ ...|||+.+. .+||||+|.+.++.+..+.+
T Consensus 102 ~~GHF~a---~~~VNGk~v~-------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 102 RDGHFEA---NGRVNGKKVD-------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCCcEEE---EEEECCEEEE-------EEEecCcceeecCHHHHHHh
Confidence 3455544 3678888875 99999999999999876654
No 48
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=42.75 E-value=26 Score=30.48 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=23.4
Q ss_pred eEEECCeeeceecCCceEEEcCCCCCcccCHHHHHHH
Q 015145 176 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 212 (412)
Q Consensus 176 ~i~v~~~~~~~~~~~~~~ivDSGts~i~lP~~~~~~l 212 (412)
.++++|.++. |+||||+..+.++....+++
T Consensus 28 ~~~ing~~vk-------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-------EEEeCCCCccccCHHHHHHc
Confidence 4677888875 99999999999999987763
No 49
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=38.65 E-value=23 Score=29.69 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=20.3
Q ss_pred CcEEEccccccceEEEEeCCCCeE
Q 015145 383 PLWILGDVFMGVYHTVFDSGKLRI 406 (412)
Q Consensus 383 ~~~iLG~~fl~~~yvvfD~e~~rI 406 (412)
+..+||..||+++-++.|+.+.++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 356999999999999999987653
No 50
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=35.72 E-value=1.1e+02 Score=26.14 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=47.6
Q ss_pred eeeecCccCccceEEecCCCCCCCCCCCCCCCCceEECCcEEEEEEcCceE-EEEEEEEEEEECCeEEeeeEEEEEEeec
Q 015145 8 LVLALPHKISVSYLIPAVPISGFHLQSAISLFPAISIRGKSCEINYGSGSI-SGFFSQDNVEVGDVVVKDQVFIEATREG 86 (412)
Q Consensus 8 ~~~~~p~t~s~~~wvp~~~~c~~~~~y~p~~Sst~~~~~~~~~i~Y~~gs~-~G~~~~D~v~lg~~~~~~~~fg~~~~~~ 86 (412)
.+-...|||++..-++..-+-.- ...+.. ...+..+.=..|.. ...+.-|.+++|+..+.|+.+.++....
T Consensus 22 ~~~flVDTGAs~t~is~~~A~~L--gl~~~~------~~~~~~~~ta~G~~~~~~~~l~~l~iG~~~~~nv~~~v~~~~~ 93 (121)
T TIGR02281 22 NVRFLVDTGATSVALNEEDAQRL--GLDLNR------LGYTVTVSTANGQIKAARVTLDRVAIGGIVVNDVDAMVAEGGA 93 (121)
T ss_pred EEEEEEECCCCcEEcCHHHHHHc--CCCccc------CCceEEEEeCCCcEEEEEEEeCEEEECCEEEeCcEEEEeCCCc
Confidence 44556788888776665411110 011111 12233444445553 4556889999999999999977664321
Q ss_pred CcccccCCccEEEeccC
Q 015145 87 SLTFLLARFDGIIGLGF 103 (412)
Q Consensus 87 ~~~~~~~~~dGilGLg~ 103 (412)
..+|+||+.+
T Consensus 94 -------~~~~LLGm~f 103 (121)
T TIGR02281 94 -------LSESLLGMSF 103 (121)
T ss_pred -------CCceEcCHHH
Confidence 1279999864
No 51
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=30.80 E-value=41 Score=27.22 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.6
Q ss_pred CceEEEcCCCCCcccCHH
Q 015145 190 GCAAIVDSGTSLLAGPTP 207 (412)
Q Consensus 190 ~~~~ivDSGts~i~lP~~ 207 (412)
...++||||++.++++..
T Consensus 11 ~~~~~~DTGSs~~Wv~~~ 28 (109)
T cd05470 11 TFNVLLDTGSSNLWVPSV 28 (109)
T ss_pred eEEEEEeCCCCCEEEeCC
Confidence 456999999999999875
No 52
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=29.51 E-value=33 Score=29.86 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=20.4
Q ss_pred EEEcCCCC-CcccCHHHHHHHHHHh
Q 015145 193 AIVDSGTS-LLAGPTPVVTEINHAI 216 (412)
Q Consensus 193 ~ivDSGts-~i~lP~~~~~~l~~~l 216 (412)
.+||||.+ ++.+|.++++++....
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~~~~ 53 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLGLPL 53 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcCCCc
Confidence 58999999 9999999999875544
No 53
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=26.08 E-value=2.4e+02 Score=23.11 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=17.8
Q ss_pred CCceEEEcCCCCCcccCHHHHH
Q 015145 189 GGCAAIVDSGTSLLAGPTPVVT 210 (412)
Q Consensus 189 ~~~~~ivDSGts~i~lP~~~~~ 210 (412)
++...+||||+....+|....+
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 4567899999999999977444
No 54
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=21.20 E-value=1.6e+02 Score=20.99 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=17.9
Q ss_pred eEEEcCCCCCcccCHHHHHHH
Q 015145 192 AAIVDSGTSLLAGPTPVVTEI 212 (412)
Q Consensus 192 ~~ivDSGts~i~lP~~~~~~l 212 (412)
.+++|+|++...+..+.++.+
T Consensus 11 ~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 11 RALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEcCCCcccccCHHHHHHc
Confidence 599999999999999887654
Done!