BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015149
(412 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 215 bits (547), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 177/288 (61%), Gaps = 17/288 (5%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAAL 100
D R++YVGN+ VT L+ ++FS GP + CK+I + S+ Y FV++++ R AA
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 101 AIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC 159
A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + + F+ F
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 123
Query: 160 SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEK 219
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + +
Sbjct: 124 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 183
Query: 220 QSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 279
Q +++K + ++ N+ +P+N TVY G ++S +T + + F G
Sbjct: 184 QENNTKQL--------RFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPF--G 229
Query: 280 TIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
I ++RV +KG+ FVR+STH AA AI N + G +KC WG +
Sbjct: 230 QIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 277
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 41/216 (18%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQED 186
ED ++VG+LS +VT+ + FS C +++ + + + FV F D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 187 AQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAP 246
A +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN----------------------- 95
Query: 247 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTH 300
+ V+VG+LS E+T+ D+ F G I D RV +D KG+GFV +
Sbjct: 96 -----HFHVFVGDLSPEITTEDIKSAFAPF--GKISDARVVKDMATGKSKGYGFVSFYNK 148
Query: 301 PEAALAIQMGNARILCGKPIKCSWGSKPTPPGTSST 336
+A AI + L G+ I+ +W ++ PP ST
Sbjct: 149 LDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKST 183
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 208 bits (530), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 119/305 (39%), Positives = 176/305 (57%), Gaps = 34/305 (11%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---------------- 86
D R++YVGN+ VT L+ ++FS GP + CK+I + S
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63
Query: 87 ---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSP 142
Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSP
Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 143 EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202
E+T + + F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG R
Sbjct: 124 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 203 QIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSS 262
QIR NWA + + Q +++K + ++ N+ +P+N TVY G ++S
Sbjct: 184 QIRTNWATRKPPAPKSTQETNTKQL--------RFEDVVNQSSPKN----CTVYCGGIAS 231
Query: 263 EVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322
+T + + F G I ++RV +KG+ FVR+STH AA AI N + G +KC
Sbjct: 232 GLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 289
Query: 323 SWGSK 327
WG +
Sbjct: 290 YWGKE 294
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 54/231 (23%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR----SRGFG----- 177
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 178 ------FVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELT 231
FV F DA +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN-------- 112
Query: 232 NGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-- 289
+ V+VG+LS E+T+ D+ F G I D RV +D
Sbjct: 113 --------------------HFHVFVGDLSPEITTEDIKSAFAPF--GKISDARVVKDMA 150
Query: 290 ----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPPGTSST 336
KG+GFV + +A AI + L G+ I+ +W ++ PP ST
Sbjct: 151 TGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKST 200
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 205 bits (521), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 171/294 (58%), Gaps = 28/294 (9%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACF 153
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA +
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 214 TSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 273
+ S++K Q +E +++P TVY G ++S +T + + F
Sbjct: 187 PAPKSTYESNTK------------QLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTF 234
Query: 274 HALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
G I ++RV DKG+ FVR+S+H AA AI N + G +KC WG +
Sbjct: 235 SPF--GQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKE 286
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 30/208 (14%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+LS +VT+A + FS C + +++ D T + + FV F A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTT 254
NG+ + ++++ NWA T +K+ + S +VV + + + +
Sbjct: 67 NGRKIMGKEVKVNWAT---TPSSQKKDTSSSTVV----------------STQRSQDHFH 107
Query: 255 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 308
V+VG+LS E+T+ D+ F G I D RV +D KG+GFV + +A AIQ
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165
Query: 309 MGNARILCGKPIKCSWGSKPTPPGTSST 336
+ L G+ I+ +W ++ PP ST
Sbjct: 166 QMGGQWLGGRQIRTNWATR-KPPAPKST 192
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 171/294 (58%), Gaps = 28/294 (9%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACF 153
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA +
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 214 TSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 273
+ S++K + E N+ +P N TVY G ++S +T + + F
Sbjct: 187 PAPKSTYESNTKQLSY--------DEVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTF 234
Query: 274 HALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
G I ++RV DKG+ FVR+++H AA AI N + G +KC WG +
Sbjct: 235 SPF--GQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKE 286
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 30/208 (14%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+LS +VT+A + FS C + +++ D T + + FV F A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTT 254
NG+ + ++++ NWA T +K+ + S +VV + + + +
Sbjct: 67 NGRKIMGKEVKVNWAT---TPSSQKKDTSSSTVV----------------STQRSQDHFH 107
Query: 255 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 308
V+VG+LS E+T+ D+ F G I D RV +D KG+GFV + +A AIQ
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165
Query: 309 MGNARILCGKPIKCSWGSKPTPPGTSST 336
+ L G+ I+ +W ++ PP ST
Sbjct: 166 QMGGQWLGGRQIRTNWATR-KPPAPKST 192
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 144 bits (364), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 108/170 (63%), Gaps = 4/170 (2%)
Query: 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDKS-SYGFVDYFDRRSAALA 101
++ R +YVGN+ +T +L++ F GP+ K++ K +K+ +Y FV+Y A +A
Sbjct: 72 TSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIA 131
Query: 102 IVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+ TLNG+ I +K+NWA+ SQ+ + FN+FVGDL+ V D TL F FP+
Sbjct: 132 LQTLNGKQIENNIVKINWAF-QSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLS 190
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
VMWD +TG SRG+GFVSF +Q+DAQ+A++ + G+ L R +R NWAAK
Sbjct: 191 GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 37/197 (18%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+L +T+ L F V ++ ++M D K ++ + FV + DA A+ L
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIALQTL 135
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTT 254
NGK + N ++ NWA + Q+ S++D
Sbjct: 136 NGKQIENNIVKINWAFQS-------------------------QQSSSDDT-------FN 163
Query: 255 VYVGNLSSEVTSVDLHRHFHA----LCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMG 310
++VG+L+ V L F L + D++ +G+GFV +++ +A A+
Sbjct: 164 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 223
Query: 311 NARILCGKPIKCSWGSK 327
+ L G+P++ +W +K
Sbjct: 224 QGQDLNGRPLRINWAAK 240
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 309
P+ TT Y+GN+ T DL F G I D + +KG F++Y TH +AA+ I
Sbjct: 338 PRVTTAYIGNIPHFATEADLIPLFQNF--GFILDFKHYPEKGCCFIKYDTHEQAAVCIVA 395
Query: 310 GNARILCGKPIKCSWGSK 327
G+ ++ WG +
Sbjct: 396 LANFPFQGRNLRTGWGKE 413
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 23/122 (18%)
Query: 213 ATSGDEKQSSDSK-----SVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 267
A G+ +Q+ D++ SVV N I+ G+E S+ +YVGNL +T
Sbjct: 41 AVEGNSEQAEDNQGENDPSVVP-ANAITGGRETSDR----------VLYVGNLDKAITED 89
Query: 268 DLHRHFHALCVGTIEDVRVQRDKG-----FGFVRYSTHPEAALAIQMGNARILCGKPIKC 322
L ++F G I ++++ DK + FV Y +A +A+Q N + + +K
Sbjct: 90 ILKQYFQ--VGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKI 147
Query: 323 SW 324
+W
Sbjct: 148 NW 149
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 154/290 (53%), Gaps = 14/290 (4%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIV 103
+++++G++ + + L FS G + K+I+ ++ YGFV++ +A +
Sbjct: 84 KTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQ 143
Query: 104 TLNGRHI--FGQPIKVNWAYASS--QREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPT 158
+ NG + QP ++NWA S+ +R +T F++FVGDL+ +VTD L F S +P+
Sbjct: 144 SYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPS 203
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE 218
A+V+ D TG S+G+GFV F ++ + A+ ++NG + +R +R A S E
Sbjct: 204 LKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHE 263
Query: 219 KQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCV 278
+ SS + V L+ G + ++ + + TT++VG L SEVT +L + F+
Sbjct: 264 QYSSQA---VILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQF-- 318
Query: 279 GTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328
G + V++ KG GFV++S A AIQ + I+ + ++ SWG P
Sbjct: 319 GEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSP 368
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 42/219 (19%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKDKSS----YGFVDYFDR 95
R + + S++VG++ VT+ +L++ F+S P L+G K++ + YGFV + D
Sbjct: 170 RAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDE 229
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWA---------------------YAS-------SQRE 127
+ A+ +NG + + +++ A YAS SQ +
Sbjct: 230 SERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSD 289
Query: 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187
S + +FVG L EVTD L F+ F ++ +G GFV F ++ A
Sbjct: 290 GDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIP------AGKGCGFVQFSDRSSA 343
Query: 188 QSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKS 226
Q AI L+G +G + +R +W G + +++ +DS S
Sbjct: 344 QEAIQKLSGAIIGKQAVRLSW---GRSPANKQMRTDSGS 379
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 150/291 (51%), Gaps = 12/291 (4%)
Query: 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAI 102
R++++G++ V L FS TG L K+I+ + YGF+++ +A +
Sbjct: 23 VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82
Query: 103 VTLNGRHIFGQPI--KVNWA-YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSV-FPT 158
T NG + G + ++NWA + S Q+ D ++FVGDL+P+VTD L F V + +
Sbjct: 83 QTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSS 142
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE 218
A+V+ D TGRS+G+GFV F + + A+ ++NG + R +R + A G +
Sbjct: 143 VRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQ 202
Query: 219 KQSSDSKSVVELT-NGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALC 277
+Q +K+V +T ++ PE++ TT+ V NL VT +L + F L
Sbjct: 203 QQYV-TKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQL- 260
Query: 278 VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328
G + V++ KG+G+V++ T P A A+Q +++ + ++ SW P
Sbjct: 261 -GEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 310
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 44/213 (20%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFS-STGPLEGCKLIKKDKS----SYGFVDYFDR 95
+ DA S++VG++ P VT+ LLQE F + G K++ + YGFV + +
Sbjct: 109 KVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEE 168
Query: 96 RSAALAIVTLNGRHIFGQPIKVN--------------------------------WAYAS 123
A+ +NG + +P++++ AY +
Sbjct: 169 SERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVA 228
Query: 124 SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRN 183
D + + V +L VT+ L FS V++ K ++G+G+V F+
Sbjct: 229 PPESDVTCT-TISVANLDQNVTEEELKKAFSQL-----GEVIY-VKIPATKGYGYVQFKT 281
Query: 184 QEDAQSAINDLNGKWLGNRQIRCNWAAKGATSG 216
+ A+ A+ + G+ +G + +R +W+ G
Sbjct: 282 RPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDG 314
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 153/301 (50%), Gaps = 18/301 (5%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRR 96
R ++++VG++ + L FS TG + K+I+ +S YGFV++ R
Sbjct: 101 RGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRA 160
Query: 97 SAALAIVTLNGRHI--FGQPIKVNWAYASS--QREDTSG-HFNVFVGDLSPEVTDATLFA 151
+A + +G + QP ++NWA S+ +R +G +VFVGDLSP+VTD L
Sbjct: 161 AAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHE 220
Query: 152 CFS-VFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
FS +P+ A+V+ D TGRS+G+GFV F ++ + A+ ++NG + NRQ+R A
Sbjct: 221 TFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIAT 280
Query: 211 KGATSGDEKQSSDSKSVVELTNGISDGQE--KSNEDAPENNPQYTTVYVGNLSSEVTSVD 268
+++Q S S++V+ S+G S D N T++VG + +V D
Sbjct: 281 PKRAIANQQQHS-SQAVILAGGHGSNGSMGYGSQSDGESTN---ATIFVGGIDPDVIDED 336
Query: 269 LHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328
L + F G + V++ KG GFV+++ A AI+ N ++ ++ SWG P
Sbjct: 337 LRQPFSQF--GEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP 394
Query: 329 T 329
Sbjct: 395 N 395
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSSYGFVDYFDRRSAALAIV 103
ST +++VG I P V + L++ FS G + K+ + K GFV + DR+SA AI
Sbjct: 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK---GCGFVQFADRKSAEDAIE 374
Query: 104 TLNGRHIFGQPIKVNWAYASSQ--REDTSGHFN 134
+LNG I ++++W + ++ R D+ +N
Sbjct: 375 SLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWN 407
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 151/294 (51%), Gaps = 23/294 (7%)
Query: 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAI 102
++++VG++ + L FS T + K+I+ ++ YGFV++ R +A A+
Sbjct: 118 VKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEAL 177
Query: 103 VTLNGRHI--FGQPIKVNWAYASSQREDTSGH---FNVFVGDLSPEVTDATLFACFS-VF 156
+ +G + QP ++NWA S+ + S + ++FVGDL+P+V+DA L F+ +
Sbjct: 178 QSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRY 237
Query: 157 PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA--KGAT 214
P+ A+V+ D TGRS+G+GFV F ++ + A+ ++NG + +RQ+R A + A
Sbjct: 238 PSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAA 297
Query: 215 SGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH 274
G + S LT G S D NN +T++VG L ++VT DL + F
Sbjct: 298 YGQQNGSQ------ALTLAGGHGGNGSMSDGESNN---STIFVGGLDADVTEEDLMQPFS 348
Query: 275 ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328
G + V++ KG GFV+++ A AI N ++ ++ SWG P
Sbjct: 349 DF--GEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP 400
Score = 39.7 bits (91), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSSYGFVDYFDRRSAALAIV 103
S +++VG + VT L + FS G + K+ + K GFV + +R+SA AI
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK---GCGFVQFANRQSAEEAIG 380
Query: 104 TLNGRHIFGQPIKVNWAYASSQ--REDTSGHFN 134
LNG I ++++W + ++ R D+ +N
Sbjct: 381 NLNGTVIGKNTVRLSWGRSPNKQWRSDSGNQWN 413
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 146/295 (49%), Gaps = 27/295 (9%)
Query: 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAA 99
A RS+++G++ P + L VF TG K+I+ ++ Y GF+++ + +A
Sbjct: 76 AGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAE 135
Query: 100 LAIVTLNGRHIFG--QPIKVNWAY--ASSQREDTSGHFNVFVGDLSPEVTDATLFACF-S 154
+ T NG + Q ++NWA A +R+ VFVGDL+P+VTD L F +
Sbjct: 136 RNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKA 195
Query: 155 VFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGAT 214
V+ + A+V+ D+ TGRS+G+GFV F ++ + A+ ++NG++ +R +R AA
Sbjct: 196 VYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAA---- 251
Query: 215 SGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH 274
+ K + + Q S E P N TT++VG + VT DL F
Sbjct: 252 --------NKKPLTMQPASYQNTQGNSGESDPTN----TTIFVGAVDQSVTEDDLKSVFG 299
Query: 275 ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329
G + V++ K GFV+Y+ A A+ + N L G+ I+ SWG P+
Sbjct: 300 QF--GELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPS 352
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 43/218 (19%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+++GDL P + + L F + + A+V+ +++ G S G+GF+ F N A+ +
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 195 NGKWL--GNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQY 252
NG + + R NWA GA G+ +Q+ + PE+
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGA--GERRQA----------------------EGPEH---- 173
Query: 253 TTVYVGNLSSEVTSVDLHRHFHAL-----CVGTIEDVRVQRDKGFGFVRYSTHPEAALAI 307
TV+VG+L+ +VT L F A+ + D R KG+GFVR++ E A+
Sbjct: 174 -TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAM 232
Query: 308 QMGNARILCGKPIKCSWGSKPTPPGTSSTPLPPPPAPH 345
N + +P++ T P + PL PA +
Sbjct: 233 TEMNGQYCSSRPMR-------TGPAANKKPLTMQPASY 263
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL 105
T +++VG + VT L+ VF G L K+ + GFV Y +R A A+ L
Sbjct: 276 TNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRC--GFVQYANRACAEQALSVL 333
Query: 106 NGRHIFGQPIKVNWAYASSQRE 127
NG + GQ I+++W + S ++
Sbjct: 334 NGTQLGGQSIRLSWGRSPSNKQ 355
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 147/293 (50%), Gaps = 28/293 (9%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLE--GCKLIKKDKSS----YGFVDYFDRRSAALA 101
++++VG++H + A L F+S E K+I+ + YGFV++ A
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 102 IVTLNGRHI--FGQPIKVNWAYASS---QREDTSGHFNVFVGDLSPEVTDATLFACFS-V 155
+ NG + QP ++NWA S+ + E+ ++FVGDLSP+V+D L FS
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 156 FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+P+ A+V+ D TGRS+G+GFV F ++ + A+ ++NG +R +R A T+
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 280
Query: 216 GDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 275
G ++Q + NG PE + TT++VG L S VT DL + F+
Sbjct: 281 GYQQQGG------YMPNGTL--------TRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNE 326
Query: 276 LCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328
G I V++ KG GFV++ P A A++ N ++ + ++ SWG P
Sbjct: 327 F--GEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNP 377
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 28/188 (14%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKDKSS----YGFVDYFDRRSAALAIV 103
S++VG++ P V++ LL E FS P ++ K++ + YGFV + D A+
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 104 TLNGRHIFGQPIKVNWAYAS-----------------SQREDTSGHFNVFVGDLSPEVTD 146
+NG + +++ A ++ E + +FVG L VTD
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206
L F+ F ++ +G GFV F N+ +A+ A+ LNG +G + +R
Sbjct: 318 EDLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 371
Query: 207 NWAAKGAT 214
+W A
Sbjct: 372 SWGRNPAN 379
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSSYGFVDYFDRRSAALAIVTLNG 107
+++VG + VT+ L++ F+ G + K+ + K GFV + +R +A A+ LNG
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK---GCGFVQFVNRPNAEEALEKLNG 361
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFV 137
I Q ++++W + ++ + N +V
Sbjct: 362 TVIGKQTVRLSWGRNPANKQPRDKYGNQWV 391
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 238 QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------G 291
Q + N+ N + T++VG+L + L+ F + I V+V R+K G
Sbjct: 86 QSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEG 145
Query: 292 FGFVRYSTHPEAALAIQMGNARIL--CGKPIKCSWGS 326
+GFV + +H A ++ N + +P + +W S
Sbjct: 146 YGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWAS 182
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 149/296 (50%), Gaps = 27/296 (9%)
Query: 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAA 99
AS +S+++G++ + + VF+ +G K+I+ YGF+++ A
Sbjct: 56 ASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAE 115
Query: 100 LAIVTLNGRHI--FGQPIKVNWAYASS--QREDTSG-HFNVFVGDLSPEVTDATLFACF- 153
+ T NG + Q ++NWA A + +R T G +FVGDL+PEVTD L F
Sbjct: 116 RVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFK 175
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
+V+ + A+V+ D+ TGRS+G+GFV F ++ + A+ ++NG++ R +R AA
Sbjct: 176 NVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAA--- 232
Query: 214 TSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 273
+K+ + + + + +N A +N+P TT++VG L + VT +L F
Sbjct: 233 ----------NKNALPMQPAMYQNTQGAN--AGDNDPNNTTIFVGGLDANVTDDELKSIF 280
Query: 274 HALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329
G + V++ K GFV+Y+ A A+ + N L G+ I+ SWG P
Sbjct: 281 GQF--GELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPN 334
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 27/193 (13%)
Query: 49 SVYVGNIHPQVTNALLQEVFSST-GPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIV 103
+++VG++ P+VT+ +L + F + G ++G K++ + YGFV + D A+
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 104 TLNGRHIFGQPIKVNWA------------YASSQR----EDTSGHFNVFVGDLSPEVTDA 147
+NG++ +P+++ A Y ++Q ++ + +FVG L VTD
Sbjct: 215 EMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDD 274
Query: 148 TLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207
L + F F ++ ++ G FV + N+ A+ A++ LNG LG + IR +
Sbjct: 275 ELKSIFGQFGELLHVKIPPGKRCG------FVQYANKASAEHALSVLNGTQLGGQSIRLS 328
Query: 208 WAAKGATSGDEKQ 220
W D+ Q
Sbjct: 329 WGRSPNKQSDQAQ 341
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 152/321 (47%), Gaps = 39/321 (12%)
Query: 20 YHPSLLAAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL 79
++P A P ++P A R++++G++ + L F+ TG + K+
Sbjct: 43 WNPQAAAPPSVQPTT---------ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKV 93
Query: 80 IKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQP---IKVNWAYASS-QREDTSG 131
I+ ++ YGF+++ +A + T N I P ++NWA SS + D S
Sbjct: 94 IRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSP 153
Query: 132 HFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSA 190
+ +FVGDL+ +VTD L F + +P+ A+V+ D+ TGR++G+GFV F ++ + A
Sbjct: 154 DYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRA 213
Query: 191 INDLNGKWLGNRQIRCNWAA--KGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPEN 248
+ ++NG R +R AA KG T + S + V +N
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTT-----------------DN 256
Query: 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQ 308
+P TTV+VG L + VT L F G I V++ K GFV++S A A++
Sbjct: 257 DPNNTTVFVGGLDASVTDDHLKNVFSQY--GEIVHVKIPAGKRCGFVQFSEKSCAEEALR 314
Query: 309 MGNARILCGKPIKCSWGSKPT 329
M N L G ++ SWG P+
Sbjct: 315 MLNGVQLGGTTVRLSWGRSPS 335
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR 108
+V+VG + VT+ L+ VFS G + K+ + GFV + ++ A A+ LNG
Sbjct: 262 TVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC--GFVQFSEKSCAEEALRMLNGV 319
Query: 109 HIFGQPIKVNWAYASSQRE 127
+ G ++++W + S ++
Sbjct: 320 QLGGTTVRLSWGRSPSNKQ 338
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 146/308 (47%), Gaps = 25/308 (8%)
Query: 37 NLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDY 92
N P + + RS+++G++ + L F TG L K+I+ ++ YGF+++
Sbjct: 73 NPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEF 132
Query: 93 FDRRSAALAIVTLNGRHI--FGQPIKVNWA-YASSQREDTSGHFNVFVGDLSPEVTDATL 149
+A + T NG + Q ++NWA + +R D S +FVGDL+ +VTD L
Sbjct: 133 RSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYIL 192
Query: 150 FACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208
F SV+ + A+V+ D+ TGRS+G+GFV F ++ + A+ ++NG R +R
Sbjct: 193 QETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGP 252
Query: 209 AAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVD 268
AA G ++++ + T G SD P TT++VG L V
Sbjct: 253 AANKKPVGTPQKATYQNP--QATQGESD-------------PNNTTIFVGGLDPTVAEEH 297
Query: 269 LHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328
L + F G + V++ K GFV++ T A A+ N L G+ I+ SWG P
Sbjct: 298 LRQVFSPY--GELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSP 355
Query: 329 TPPGTSST 336
+ T T
Sbjct: 356 SSKQTDQT 363
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 125 bits (313), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 145/293 (49%), Gaps = 28/293 (9%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLE--GCKLIKKDKSS----YGFVDYFDRRSAALA 101
++++VG++ + A L F+S E K+I+ + YGFV++ A
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 102 IVTLNGRHI--FGQPIKVNWAYASS---QREDTSGHFNVFVGDLSPEVTDATLFACFS-V 155
+ NG + QP ++NWA S+ + E+ ++FVGDL+P+V+DA L FS
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 156 FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+P+ A+V+ D TGRS+G+GFV F ++ + A+ ++NG +R +R A T+
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 282
Query: 216 GDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 275
G ++Q S G +E N TT++VG L S VT DL + F
Sbjct: 283 GYQQQGGYMPS----------GAFTRSEGDTIN----TTIFVGGLDSSVTDEDLKQPFSE 328
Query: 276 LCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328
G I V++ KG GFV++ P A A++ N ++ + ++ SWG P
Sbjct: 329 F--GEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNP 379
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSSYGFVDYFDRRSAALAIVTLNG 107
+++VG + VT+ L++ FS G + K+ + K GFV + +R +A A+ LNG
Sbjct: 307 TIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK---GCGFVQFVNRPNAEEALEKLNG 363
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFV 137
I Q ++++W + ++ + N +V
Sbjct: 364 TVIGKQTVRLSWGRNPANKQPRDKYGNQWV 393
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 238 QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------G 291
Q + N+ N + T++VG+L + + L+ F + I ++V R+K G
Sbjct: 88 QSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEG 147
Query: 292 FGFVRYSTHPEAALAIQMGNARIL--CGKPIKCSWGS 326
+GFV + +H A +Q N + +P + +W S
Sbjct: 148 YGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWAS 184
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 141/299 (47%), Gaps = 30/299 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S YGFV + +
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +VM D +GRSRGFGFV++ N E+AQ A++++NGK + R I A K
Sbjct: 211 FSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 272
E+QS + ++ QE+ N Q +YV NL + L +
Sbjct: 270 I----ERQSELKRKFEQIK------QERINRY------QGVNLYVKNLDDGIDDDRLRKE 313
Query: 273 FHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
F L GTI +V + KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 314 F--LPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 131/291 (45%), Gaps = 46/291 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+Y+G++HP VT A+L E FS GP+ C+ I +S SY ++++ A A+ T
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ SRG+GFV F E A AI +NG L +R++ S E++
Sbjct: 128 CKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGH----FKSRREREL 181
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 281
V+E TN VY+ N ++ L F A G
Sbjct: 182 EYGAKVMEFTN----------------------VYIKNFGEDMDDKRLREIFSAF--GNT 217
Query: 282 EDVRVQ-----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
V+V R +GFGFV Y H EA A+ N + + G+ I K
Sbjct: 218 LSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ F G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 140/299 (46%), Gaps = 30/299 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +VM D TGRSRGFGFV++ N E+AQ A++++NGK + R I A K
Sbjct: 211 FSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 272
E+Q + ++ QE+ N Q +YV NL + L +
Sbjct: 270 I----ERQGELKRKFEQIK------QERINRY------QGVNLYVKNLDDGIDDDRLRKE 313
Query: 273 FHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
F GTI +V + KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 314 FSPY--GTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 131/291 (45%), Gaps = 46/291 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ I +S Y ++++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ SRG+GFV F QE A AI +NG L +R++ S E++
Sbjct: 128 CKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH----FKSRREREL 181
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 281
V+E TN VY+ N ++ L F A G
Sbjct: 182 EYGAKVMEFTN----------------------VYIKNFGEDMDDKRLREIFSAF--GNT 217
Query: 282 EDVRVQ-----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
V+V R +GFGFV Y H EA A+ N + + G+ I K
Sbjct: 218 LSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 136/299 (45%), Gaps = 30/299 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 272
VE + E+ +D Q +YV NL + L +
Sbjct: 270 ---------------VERQTELKRKFEQMKQDRITRY-QGVNLYVKNLDDGIDDERLRKE 313
Query: 273 FHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 314 FSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 131/290 (45%), Gaps = 44/290 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH----ALC 277
E TN VY+ N ++ L F AL
Sbjct: 182 ELGARAKEFTN----------------------VYIKNFGEDMDDERLKELFGKFGPALS 219
Query: 278 VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 220 VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 139/299 (46%), Gaps = 30/299 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 272
E+Q+ + ++ Q++ Q +YV NL + L +
Sbjct: 270 V----ERQTELKRKFEQMK------QDRITRY------QGVNLYVKNLDDGIDDERLRKE 313
Query: 273 FHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 314 FSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 131/290 (45%), Gaps = 44/290 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH----ALC 277
E TN VY+ N ++ L F AL
Sbjct: 182 ELGARAKEFTN----------------------VYIKNFGEDMDDERLKELFGKFGPALS 219
Query: 278 VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 220 VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 139/299 (46%), Gaps = 30/299 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 272
E+Q+ + ++ Q++ Q +YV NL + L +
Sbjct: 270 V----ERQTELKRKFEQMK------QDRITRY------QGVNLYVKNLDDGIDDERLRKE 313
Query: 273 FHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 314 FSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 115 bits (287), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 130/290 (44%), Gaps = 44/290 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP T A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH----ALC 277
E TN VY+ N ++ L F AL
Sbjct: 182 ELGARAKEFTN----------------------VYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 278 VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 220 VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 136/299 (45%), Gaps = 30/299 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 272
VE + E+ +D Q +YV NL + L +
Sbjct: 270 ---------------VERQTELKRKFEQMKQDRITRY-QGVNLYVKNLDDGIDDERLRKE 313
Query: 273 FHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 314 FSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 131/290 (45%), Gaps = 44/290 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH----ALC 277
E TN VY+ N ++ L F AL
Sbjct: 182 ELGARAKEFTN----------------------VYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 278 VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 220 VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 136/299 (45%), Gaps = 30/299 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 272
VE + E+ +D Q +YV NL + L +
Sbjct: 270 ---------------VERQTELKRKFEQMKQDRITRY-QGVNLYVKNLDDGIDDERLRKE 313
Query: 273 FHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 314 FSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 131/290 (45%), Gaps = 44/290 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH----ALC 277
E TN VY+ N ++ L F AL
Sbjct: 182 ELGARAKEFTN----------------------VYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 278 VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 220 VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 147/295 (49%), Gaps = 23/295 (7%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVT 104
++++G + P VT A +Q+V+++ G KLI+ + Y FV++ A+ A+ +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 105 LNGRHIFG--QPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACF-SVFPT 158
+N + I G K+NWA RE + + +++FVGDLSP V + +++ F S + +
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE 218
C A++M D +T SRG+GFV F ++ D +SA+ ++ G+ G+R IR AT +
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGL----ATPKSK 268
Query: 219 KQSSDSKSVVELTN---GISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 275
+VV ++ G + + A N +TV+VG LS V+ +L F
Sbjct: 269 AHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTAN---STVFVGGLSKFVSEEELKYLFQN 325
Query: 276 LCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 330
G I V++ KG GFV++ A +AI L I+ SWG P
Sbjct: 326 F--GEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRNQNP 378
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 34/208 (16%)
Query: 121 YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVS 180
Y SS+ E+ +++G+L P VT+A + ++ +++ ++ TG + G+ FV
Sbjct: 81 YGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVE 140
Query: 181 FRNQEDAQSAINDLNGKWLG-NRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQE 239
F + +A SA++ N G N + NWA+ G +E
Sbjct: 141 FASPHEASSAMSMNNKPIPGTNHLFKLNWASGGGL-----------------------RE 177
Query: 240 KSNEDAPENNPQYTTVYVGNLSSEVTSVDLH-----RHFHALCVGTIEDVRVQRDKGFGF 294
KS A E +++VG+LS V D++ R+ + D + +G+GF
Sbjct: 178 KSISKASE-----YSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGF 232
Query: 295 VRYSTHPEAALAIQMGNARILCGKPIKC 322
VR++ + A+ +I +PI+
Sbjct: 233 VRFTDENDQKSALAEMQGQICGDRPIRV 260
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 130/282 (46%), Gaps = 46/282 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPL---EGCKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ + +S Y ++++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N + GQPI++ W SQR+ SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFEMLKGQPIRIMW----SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ SRGFGFV F E AQ AIN +NG L +R++ S E+++
Sbjct: 128 CKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH----FKSRREREA 181
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 281
+E TN +YV NL +V L F G +
Sbjct: 182 ELGARALEFTN----------------------IYVKNLPVDVDEQGLQDLFSQF--GKM 217
Query: 282 EDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGK 318
V+V RD + FGFV + H EA A+ N + + G+
Sbjct: 218 LSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR 259
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 130/297 (43%), Gaps = 26/297 (8%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK+ + S +GFV + +
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G N++V +L +V + L
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +VM D +G SR FGFV+F E+AQ A+ +NGK + R + A K
Sbjct: 211 FSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 272
VE N + E+ +D Q +YV NL + L +
Sbjct: 270 ---------------VERQNELKRRFEQMKQDRLRRY-QGVNLYVKNLDDSIDDDKLRKE 313
Query: 273 FHALCVGTIEDVRVQ--RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
F V T V + KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 314 FSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 254 TVYVGNLSSEVTSVDLHRHFH----ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 309
++YVG+L +VT L+ F L + DV +R G+ ++ + +A A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 310 GNARILCGKPIKCSWGSK 327
N +L G+PI+ W +
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVGTKPLYVALAQRKEERK 375
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 139/299 (46%), Gaps = 30/299 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEI 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +VM D +GRSRGFGFV++ N E+AQ A+ ++NGK + R + A K
Sbjct: 211 FSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 272
E+Q + ++ QE+ N Q +YV NL + L +
Sbjct: 270 I----ERQGELKRKFEQIK------QERINRY------QGVNLYVKNLDDGIDDDRLRKE 313
Query: 273 FHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
F GTI +V + KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 314 FSPY--GTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 131/291 (45%), Gaps = 46/291 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+Y+G++HP VT A+L E FS GP+ C+ I +S Y ++++ A A+ T
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ SRG+GFV F QE A AI +NG L +R++ S E++
Sbjct: 128 CKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH----FKSRREREL 181
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 281
V+E TN VY+ N ++ L F A G
Sbjct: 182 EYGAKVMEFTN----------------------VYIKNFGEDMDDKRLKEIFSAF--GNT 217
Query: 282 EDVRVQ-----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
V+V R +GFGFV Y H EA A+ N + + G+ + K
Sbjct: 218 LSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQK 268
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 139/299 (46%), Gaps = 30/299 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +++V N+ + N L + S+ G + C ++ + S YGFV + +
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + G+ + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 272
E+Q+ ++ ++ Q++ Q +YV NL + L +
Sbjct: 270 V----ERQTELKRTFEQMK------QDRITRY------QVVNLYVKNLDDGIDDERLRKA 313
Query: 273 FHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 314 FSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 128/290 (44%), Gaps = 44/290 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + LI S+Y +V++ + A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+FV +L + + L+ S F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
V+ D+ S+G+GFV F E A+ AI +NG L R++ S E+++
Sbjct: 128 CNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQ----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH----ALC 277
E N VY+ N ++ L F AL
Sbjct: 182 ELGARAKEFPN----------------------VYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 278 VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 220 VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 250 PQYTT--VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHP 301
P Y T +YVG+L +VT L+ F G I +R+ RD + +V +
Sbjct: 6 PSYPTASLYVGDLHPDVTEAMLYEKFSP--AGPILSIRICRDLITSGSSNYAYVNFQHTK 63
Query: 302 EAALAIQMGNARILCGKPIKCSWGSK 327
+A A+ N ++ GKP++ W +
Sbjct: 64 DAEHALDTMNFDVIKGKPVRIMWSQR 89
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 129/284 (45%), Gaps = 46/284 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP---LEGCK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT A+L E FS GP + C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+ FV F QE A AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 281
E TN VY+ N EV L F G
Sbjct: 182 ELGAKAKEFTN----------------------VYIKNFGEEVDDESLKELFSQF--GKT 217
Query: 282 EDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPI 320
V+V RD KGFGFV Y H +A A++ N + + GK I
Sbjct: 218 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 136/299 (45%), Gaps = 30/299 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S Y FV + + +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + EV D +L
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +VM D G+S+GFGFVS+ EDA A+ ++NGK + + I A K
Sbjct: 211 FSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 272
E+Q+ + +L QE+ + Q +Y+ NL + L +
Sbjct: 270 V----ERQAELKRKFEQLK------QERISRY------QGVNLYIKNLDDTIDDEKLRKE 313
Query: 273 FHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
F G+I +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 314 FSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 370
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 254 TVYVGNLSSEVTSVDLHRHFH----ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 309
++YVG+L S+VT L+ F L + D+ +R G+ +V + +A A+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 310 GNARILCGKPIKCSWGSK 327
N ++ GKPI+ W +
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
Score = 39.3 bits (90), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++Y+ N+ + + L++ FS G + K++ +D S +GFV + A A+ +N
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVGSKPLYVALAQRKEERK 375
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 143/295 (48%), Gaps = 21/295 (7%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS------YGFVDYFDRRSAALAI 102
++++G++ P + +Q++++S K+++ SS Y FV + +A A+
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 103 VTLNGRHIFGQ--PIKVNWAYASSQREDT----SGHFNVFVGDLSPEVTDATLFACF-SV 155
+ N I G K+NWA + + F++FVGDL P D+ LF F S+
Sbjct: 146 MKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSI 205
Query: 156 FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+P+C+ A+++ D TG SR +GFV F ++++ Q A+ + G R +R + A S
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA-----S 260
Query: 216 GDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 275
+ S + S + + S + N+D +P TTV+VG L+S ++ DL F
Sbjct: 261 PKSRASIAADSALGIV-PTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQP 319
Query: 276 LCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 330
G I ++++ KG GFV+YS A AI ++ I+ +WG P
Sbjct: 320 F--GRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHNTLP 372
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 129/276 (46%), Gaps = 43/276 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P +T ALL +VFS GP+ ++ + K Y +V+Y D + AI
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 105 LNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDAR 163
LN I G+P ++ W+ + R+ SG N+F+ +L P + + L FS F +
Sbjct: 111 LNYAEINGRPCRIMWSERDPAIRKKGSG--NIFIKNLHPAIDNKALHETFSTFGEVLSCK 168
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
V D+ G SRGFGFV F+ + DA+ AI +NG + ++ + A D
Sbjct: 169 VALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEV---YVAMHVPKKDR----- 219
Query: 224 SKSVVELTNGISDGQE-KSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIE 282
IS +E K+N +T +YV N+ E T + + F G I
Sbjct: 220 ----------ISKLEEAKAN---------FTNIYVKNIDVETTDEEFEQLFSQY--GEIV 258
Query: 283 DVRVQRD-----KGFGFVRYSTHPEAALAIQMGNAR 313
+++D KGFGFV + H AA A++ N +
Sbjct: 259 SAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGK 294
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 128/292 (43%), Gaps = 32/292 (10%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++++ N+HP + N L E FS+ G + CK+ + + +GFV + + A AI +
Sbjct: 139 NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + G + V R E+ +F N++V ++ E TD FS +
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIV 258
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + D + G+ +GFGFV+F + A A+ +LNGK ++ + A K +E +
Sbjct: 259 SAALEKDAE-GKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELK 317
Query: 221 SSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 280
+ +E Q +++ NL + L F GT
Sbjct: 318 KQYEQYRLEKLAKF----------------QGVNLFIKNLDDSIDDEKLKEEFAPY--GT 359
Query: 281 IEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
I RV RD KGFGFV +S+ EA A+ N +I+ GKP+ + +
Sbjct: 360 ITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQR 411
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 247 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTH 300
ENN ++YVG L +T L+ F L G I +RV RD G+ +V Y+ +
Sbjct: 46 ENN--NASLYVGELDPNITEALLYDVFSPL--GPISSIRVCRDAVTKASLGYAYVNYTDY 101
Query: 301 PEAALAIQMGNARILCGKPIKCSWGSK 327
AIQ N + G+P + W +
Sbjct: 102 EAGKKAIQELNYAEINGRPCRIMWSER 128
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 131/283 (46%), Gaps = 44/283 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI+ +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF----HALC 277
E TN VY+ N ++ L F AL
Sbjct: 182 ELGARAKEFTN----------------------VYIKNFGEDMDDERLKEWFGQYGAALS 219
Query: 278 VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPI 320
V + D + +GFGFV + H +A A+ N + L GK I
Sbjct: 220 VKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAI 261
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 133/299 (44%), Gaps = 30/299 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEW 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F + +VM D G+SRGFGFVSF EDAQ A++D+NGK L + I A K
Sbjct: 211 FGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 272
VE + E+ +D Q +YV NL + L +
Sbjct: 270 ---------------VERQTELKRKFEQMKQDRITRY-QGVNLYVKNLDDGIDDERLRKE 313
Query: 273 FHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
F G+I +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 314 FTPF--GSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 254 TVYVGNLSSEVTSVDLHRHFH----ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 309
++YVG+L +VT L+ F L + D+ +R G+ +V + +A A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 310 GNARILCGKPIKCSWGSK 327
N ++ GKP++ W +
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ F+ G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 133/293 (45%), Gaps = 41/293 (13%)
Query: 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAAL 100
++ S+YVG++ P V+ A L ++FS G + ++ I K Y +V++ D +
Sbjct: 35 NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRK 94
Query: 101 AIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC 159
AI LN I G+ ++ W+ S R+ SG N+F+ +L P++ + L+ FSVF
Sbjct: 95 AIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG--NIFIKNLHPDIDNKALYDTFSVFGDI 152
Query: 160 SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEK 219
+++ D+ G+S+GFGFV F + A+ AI+ LNG L ++I
Sbjct: 153 LSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV------------- 198
Query: 220 QSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 279
L+ D Q E YT +YV N++SE T F G
Sbjct: 199 -------APHLSRKERDSQ------LEETKAHYTNLYVKNINSETTDEQFQELFAKF--G 243
Query: 280 TIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
I +++D KGFGFV Y H +A A++ N L G+ + K
Sbjct: 244 PIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 127/285 (44%), Gaps = 32/285 (11%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++++ N+HP + N L + FS G + K+ + +GFV + + +A AI L
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 106 NGRHIFGQPIKV----NWAYASSQREDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + GQ I V + SQ E+T H+ N++V +++ E TD F+ F
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + D G+ +GFGFV++ EDA A+ LN L ++ A K
Sbjct: 247 SASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK--------- 296
Query: 221 SSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 280
++ V++ Q ++ Q ++V NL V L F GT
Sbjct: 297 KNERMHVLK-------KQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPY--GT 347
Query: 281 IEDVRVQR-----DKGFGFVRYSTHPEAALAIQMGNARILCGKPI 320
I +V R KGFGFV +ST EA AI N +I+ GKP+
Sbjct: 348 ITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPL 392
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++YV NI+ + T+ QE+F+ GP+ L K +GFV+Y A A+ L
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 106 NGRHIFGQPIKVNWAYASSQR-------------EDTSGH--FNVFVGDLSPEVTDATLF 150
N + G+ + V A ++R E + + N+FV +L V D L
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
F+ + T + A+VM + G+S+GFGFV F E+A AI + N + + + + A
Sbjct: 340 EEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 211 K 211
+
Sbjct: 399 R 399
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
+++V N+ V + L+E F+ G + K+++ + +GFV + A AI
Sbjct: 323 NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEK 382
Query: 106 NGRHIFGQPIKVNWAYASSQREDT 129
N + + G+P+ V A +QR+D
Sbjct: 383 NQQIVAGKPLYV----AIAQRKDV 402
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 115 bits (287), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 129/296 (43%), Gaps = 45/296 (15%)
Query: 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAA 99
A S+YVG ++P V A L E+FS G + ++ + K Y +V+Y
Sbjct: 63 AENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGE 122
Query: 100 LAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVF 156
AI LN + G+P ++ W SQR+ + SG N+F+ +L P + + L FS F
Sbjct: 123 KAIEELNYTPVEGRPCRIMW----SQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAF 178
Query: 157 PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSG 216
+V D G+S+ FGFV + +E AQ+AI +NG L +R++ G
Sbjct: 179 GKILSVKVATDD-LGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYV---------G 228
Query: 217 DEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHAL 276
D +S +E E YT +YV N+ T + F
Sbjct: 229 KHVSKKDRESKLE-----------------EMKANYTNIYVKNIDLAYTEKEFEELFAPF 271
Query: 277 CVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
G I + +++D KGFGFV + H AA A++ N + + G+ I K
Sbjct: 272 --GKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQK 325
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 135/303 (44%), Gaps = 38/303 (12%)
Query: 43 DASTCRS----VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDR 95
D S RS +++ N+HP + N L + FS+ G + K+ D +GFV Y
Sbjct: 146 DPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETE 205
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLF 150
+A AI ++NG + + + V + RE + + N++V ++ T+
Sbjct: 206 EAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFE 265
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
F+ F + + D + G+S+GFGFV+F E A A+ +LN K + ++I A
Sbjct: 266 ELFAPFGKITSIYLEKDAE-GKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQ 324
Query: 211 KGATSGDE-KQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDL 269
K +E K+ ++ + +L+ Q ++V NL ++ S L
Sbjct: 325 KKRERTEELKKQYEAVRLEKLSKY-----------------QGVNLFVKNLDEQIDSEKL 367
Query: 270 HRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324
F GTI +V D KGFGFV +ST EA AI N R++ GKP+ +
Sbjct: 368 EEEFKPF--GTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVAL 425
Query: 325 GSK 327
+
Sbjct: 426 AQR 428
Score = 38.9 bits (89), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+++V N+ Q+ + L+E F G + K++ D +GFV + A AI +
Sbjct: 352 NLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEM 411
Query: 106 NGRHIFGQPIKVNWAYASSQREDT 129
N R + G+P+ V A +QR+D
Sbjct: 412 NQRMVNGKPLYV----ALAQRKDV 431
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 136/293 (46%), Gaps = 49/293 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++ P V+ A L ++FS G + ++ I K Y +V++ D +A AI
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEK 95
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+ ++ W SQR+ + G N+F+ +L P++ + L+ FSVF
Sbjct: 96 LNFTPIKGKLCRIMW----SQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILS 151
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
++V D+ TG+S+GFG+V F E A AI+ LNG L ++I G
Sbjct: 152 SKVATDE-TGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV---------GPHLSK 201
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCV--G 279
+ +S E E +T VY+ N+++E T + F L G
Sbjct: 202 KERESKFE-----------------EMKANFTNVYIKNINTETTD----KEFEELVAKFG 240
Query: 280 TIEDVRVQR-----DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
+ V ++R +KGFGFV + H +A ++ N G+P+ + K
Sbjct: 241 KTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQK 293
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 127/294 (43%), Gaps = 32/294 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRR 96
P ++++ N+HP + N L + FS G + K+ + +G+V + +
Sbjct: 115 PSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDE 174
Query: 97 SAALAIVTLNGRHIFGQPIKVNWAYASSQRE----DTSGHF-NVFVGDLSPEVTDATLFA 151
SA+ AI LNG + GQ I V + +RE + +F NV++ +++ E TD
Sbjct: 175 SASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEE 234
Query: 152 CFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
+ F +D+ V+ G ++GFGFV+F N EDA + +LN + + N A K
Sbjct: 235 LVAKFGK-TDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQK 293
Query: 212 GATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 271
E + + +E Q +++ NL + L
Sbjct: 294 KYERQQELKKQYEATRMEKMAKY----------------QGINLFIKNLDDSIDDKKLEE 337
Query: 272 HFHALCVGTIEDVRVQ-----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPI 320
F GTI +V + KGFGFV +ST EA AI N +I+ GKP+
Sbjct: 338 EFAPY--GTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPL 389
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 224 SKSVVELTN-GISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIE 282
K+ +L N + D QE +NE+ ++ ++YVG+L V+ L+ F +G +
Sbjct: 6 EKTAEQLENLSLQDKQEGTNEEN-QSETVSASLYVGDLDPSVSEAHLYDIFSP--IGAVS 62
Query: 283 DVRVQRDK------GFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
+RV RD G+ +V ++ H A AI+ N + GK + W +
Sbjct: 63 SIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQR 113
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 138/293 (47%), Gaps = 34/293 (11%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
++++ N+HP + N L + FS+ G + CK+ + +GFV Y +A AI +
Sbjct: 147 NIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENV 206
Query: 106 NGRHIFGQPIKVNWAYASSQRE----DTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + RE + +F NV+V +L+PEV +A F F +
Sbjct: 207 NGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVT 266
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE-K 219
+ DQ+ G+SRGFGFV+F N E A +A+ ++N K + +++ A K DE K
Sbjct: 267 SVHLETDQE-GKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELK 325
Query: 220 QSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 279
+ +S + +L+ Q ++V NL + S L F G
Sbjct: 326 RLYESTRLEKLSKY-----------------QGVNLFVKNLDDSIDSEKLEEEFKPF--G 366
Query: 280 TIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
TI RV D KGFGFV +S+ EA AI N R++ GKP+ + +
Sbjct: 367 TITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 45/290 (15%)
Query: 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTL 105
+YVG ++P V ALL E+FS G + ++ + K Y +V++ + AI L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 106 NGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA 162
N + G+P ++ W SQR+ + +G N+F+ +L P + + L FS F
Sbjct: 120 NYSLVDGRPCRIMW----SQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSC 175
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
+V D+ G+S+ FGFV + E A++AI ++NG L +R++ G
Sbjct: 176 KVATDE-LGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV---------GKHVSKR 225
Query: 223 DSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIE 282
D +S E E +T VYV NL+ EV + F G +
Sbjct: 226 DRESKFE-----------------EMKANFTNVYVKNLAPEVDNAKFEEIFKPF--GPVT 266
Query: 283 DVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
V ++ D +GFGFV + H A A++ N + + G+ + K
Sbjct: 267 SVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQK 316
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+++V N+ + + L+E F G + +++ D +GFV + A AI +
Sbjct: 343 NLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEM 402
Query: 106 NGRHIFGQPIKVNWAYASSQREDT 129
N R I G+P+ V A +QR+D
Sbjct: 403 NQRMIQGKPLYV----ALAQRKDV 422
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 137/299 (45%), Gaps = 30/299 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEM 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F + +VM D G+S+GFGFVSF EDAQ A++++NGK + + + A K
Sbjct: 211 FGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 272
E+Q+ + ++ Q++ Q +YV NL + L +
Sbjct: 270 V----ERQTELKRKFEQMK------QDRITRY------QGVNLYVKNLDDGIDDERLRKE 313
Query: 273 FHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
F L GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 314 F--LPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 129/281 (45%), Gaps = 44/281 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI+ +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH----ALC 277
E TN VY+ N ++ L F AL
Sbjct: 182 ELGARAKEFTN----------------------VYIKNFGDDMNDERLKEMFGKYGPALS 219
Query: 278 VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGK 318
V + D + KGFGFV + H +A A+ N + + GK
Sbjct: 220 VKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGK 259
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 254 TVYVGNLSSEVTSVDLHRHFH----ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 309
++YVG+L +VT L+ F L + D+ +R G+ +V + +A A+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 310 GNARILCGKPIKCSWGSK 327
N ++ G+P++ W +
Sbjct: 72 MNFDVIKGRPVRIMWSQR 89
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ F G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 47/321 (14%)
Query: 21 HPSLLAAPQIEPILSGN--LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCK 78
+P+ +AP++ + S + P + S+YVG + P VT A+L E+FSS G + +
Sbjct: 23 NPAATSAPEVTAVESASPSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIR 82
Query: 79 L----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SG 131
+ + + Y +V+Y + A+ LN I G+P ++ W SQR+ +G
Sbjct: 83 VCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMW----SQRDPALRKTG 138
Query: 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191
NVF+ +L + + L F+ F +V D+ G S+G+GFV + E A +AI
Sbjct: 139 QGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAI 197
Query: 192 NDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQ 251
+NG L ++++ G D +S E E
Sbjct: 198 KHVNGMLLNDKKVFV---------GHHISKKDRQSKFE-----------------EMKAN 231
Query: 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALA 306
+T VY+ N+ EVT + + F G I + RD +GFGFV +STH A A
Sbjct: 232 FTNVYIKNIDQEVTDEEFRKMFEKF--GEITSATLSRDQEGKSRGFGFVNFSTHDSAQAA 289
Query: 307 IQMGNARILCGKPIKCSWGSK 327
+ N + + G+ + K
Sbjct: 290 VDEMNDKEIKGQKLYVGRAQK 310
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 137/337 (40%), Gaps = 77/337 (22%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + R E+ +F NV++ ++ EVTD F F +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEIT 260
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + DQ+ G+SRGFGFV+F + AQ+A++++N K + +++ A K +E +
Sbjct: 261 SATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELR 319
Query: 221 SSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 280
+ +E + Q +YV NL+ +V L F GT
Sbjct: 320 KQYEAARLEKASKY----------------QGVNLYVKNLTDDVDDEKLRELFSPF--GT 361
Query: 281 IEDVRVQRD--------------------------------------------------K 290
I +V RD K
Sbjct: 362 ITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSK 421
Query: 291 GFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
GFGFV +S+ EA+ A+ N R++ GKP+ + +
Sbjct: 422 GFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 458
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 137/298 (45%), Gaps = 41/298 (13%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDR 95
P A T S+YVG + P VT A+L E+F+S GP+ ++ + + Y +V++ +
Sbjct: 72 PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNM 131
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFAC 152
A+ LN I G+P ++ W SQR+ + G NVF+ +L P + + L
Sbjct: 132 EDGEKALDELNYTLIKGRPCRIMW----SQRDPSLRKMGTGNVFIKNLDPAIDNKALHDT 187
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +V D+ G ++G+GFV F + E A +AI +NG L ++++
Sbjct: 188 FSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV------ 240
Query: 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 272
G + +S VE K+N +T VY+ NL +E+T +
Sbjct: 241 ---GHHVSRRERQSKVEAL--------KAN---------FTNVYIKNLDTEITEQEFSDL 280
Query: 273 FHALC-VGTIEDVRVQRDK--GFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
F + ++ V+ Q DK GFGFV Y+ H A A+ N + GK + K
Sbjct: 281 FGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQK 338
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 131/292 (44%), Gaps = 32/292 (10%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ P + N L + FS+ G + CK+ + YGFV + SA AI +
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + +R E +F NV++ +L E+T+ F F +
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEIT 288
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
++ DQ + RGFGFV++ N E AQ A+++LN K +++ A K +E +
Sbjct: 289 SLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELR 347
Query: 221 SSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 280
+ +E N Q +++ NL EV L F A GT
Sbjct: 348 KRYEQMKLEKMNKY----------------QGVNLFIKNLQDEVDDERLKAEFSAF--GT 389
Query: 281 IEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
I ++ D KGFGFV Y+T EA A+ N R+L GKP+ + +
Sbjct: 390 ITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQR 441
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++++ N+ +V + L+ FS+ G + K++ ++ +GFV Y A A+ +
Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 106 NGRHIFGQPIKVNWAYASSQR 126
N R + G+P+ V A R
Sbjct: 425 NQRMLAGKPLYVALAQRKEVR 445
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 8/192 (4%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVT 104
+VYVG + +V+ LL E+F GP+ + K YGFV++ A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC-SDAR 163
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F +
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
+M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGSA 190
Query: 224 SKSVVELTNGIS 235
++ ++ N +S
Sbjct: 191 AERLLAAQNPLS 202
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 40/199 (20%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
V+VG L +V++ L+ F + + D+ TG+ +G+GFV F ++EDA AI +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTT 254
N L + IR N K S+ +K N D N
Sbjct: 75 NMIKLYGKPIRVN-----------KASAHNK----------------NLDVGAN------ 101
Query: 255 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 308
+++GNL E+ L+ F A V ++ ++ RD KG+ F+ +++ + AI+
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160
Query: 309 MGNARILCGKPIKCSWGSK 327
N + LC +PI S+ K
Sbjct: 161 AMNGQYLCNRPITVSYAFK 179
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAA 304
Q TVYVG L +V+ L F L G + + + +D+ G+GFV + + +A
Sbjct: 11 QDATVYVGGLDEKVSEPLLWELF--LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
Query: 305 LAIQMGNARILCGKPIKCSWGS 326
AI++ N L GKPI+ + S
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKAS 90
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 8/192 (4%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVT 104
+VYVG + +V+ LL E+F GP+ + K YGFV++ A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC-SDAR 163
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F +
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
+M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGSA 190
Query: 224 SKSVVELTNGIS 235
++ ++ N +S
Sbjct: 191 AERLLAAQNPLS 202
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 40/199 (20%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
V+VG L +V++ L+ F + + D+ TG+ +G+GFV F ++EDA AI +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTT 254
N L + IR N K S+ +K N D N
Sbjct: 75 NMIKLYGKPIRVN-----------KASAHNK----------------NLDVGAN------ 101
Query: 255 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 308
+++GNL E+ L+ F A V ++ ++ RD KG+ F+ +++ + AI+
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160
Query: 309 MGNARILCGKPIKCSWGSK 327
N + LC +PI S+ K
Sbjct: 161 AMNGQYLCNRPITVSYAFK 179
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAA 304
Q TVYVG L +V+ L F L G + + + +D+ G+GFV + + +A
Sbjct: 11 QDATVYVGGLDEKVSEPLLWELF--LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
Query: 305 LAIQMGNARILCGKPIKCSWGS 326
AI++ N L GKPI+ + S
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKAS 90
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 8/192 (4%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVT 104
+VYVG + +V+ LL E+F GP+ + K YGFV++ A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC-SDAR 163
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F +
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
+M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGSA 190
Query: 224 SKSVVELTNGIS 235
++ ++ N +S
Sbjct: 191 AERLLAAQNPLS 202
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 40/199 (20%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
V+VG L +V++ L+ F + + D+ TG+ +G+GFV F ++EDA AI +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTT 254
N L + IR N K S+ +K N D N
Sbjct: 75 NMIKLYGKPIRVN-----------KASAHNK----------------NLDVGAN------ 101
Query: 255 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQ 308
+++GNL E+ L+ F A V ++ ++ RD KG+ F+ +++ + AI+
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160
Query: 309 MGNARILCGKPIKCSWGSK 327
N + LC +PI S+ K
Sbjct: 161 AMNGQYLCNRPITVSYAFK 179
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAA 304
Q TVYVG L +V+ L F L G + + + +D+ G+GFV + + +A
Sbjct: 11 QDATVYVGGLDEKVSEPLLWELF--LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
Query: 305 LAIQMGNARILCGKPIKCSWGS 326
AI++ N L GKPI+ + S
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKAS 90
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 128/291 (43%), Gaps = 45/291 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y + A+
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F
Sbjct: 113 LNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 168
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ G S+G+GFV + E A +AI +NG L ++++ G
Sbjct: 169 CKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV---------GHHISK 218
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 281
D +S E E +T VY+ N+ EVT + + F G I
Sbjct: 219 KDRQSKFE-----------------EMKANFTNVYIKNIDQEVTDEEFRKMFEKF--GEI 259
Query: 282 EDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
+ RD +GFGFV +STH A A+ N + + G+ + K
Sbjct: 260 TSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQK 310
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 137/339 (40%), Gaps = 79/339 (23%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + R E+ +F NV++ ++ EVTD F F +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEIT 260
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + DQ+ G+SRGFGFV+F + AQ+A++++N K + +++ A K +E +
Sbjct: 261 SATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELR 319
Query: 221 SSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 280
+ +E + Q +YV NL+ +V L F GT
Sbjct: 320 KQYEAARLEKASKY----------------QGVNLYVKNLTDDVDDEKLRELFSPF--GT 361
Query: 281 IEDVRVQRD--------------------------------------------------- 289
I +V RD
Sbjct: 362 ITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGK 421
Query: 290 -KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
KGFGFV +S+ EA+ A+ N R++ GKP+ + +
Sbjct: 422 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 460
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEA 303
P ++YVG L VT L+ F + +G + +RV RD G+ +V Y+ +
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSS--IGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 106
Query: 304 ALAIQMGNARILCGKPIKCSWGSK 327
A++ N ++ GKP + W +
Sbjct: 107 ERALEDLNYTLIKGKPCRIMWSQR 130
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 128/291 (43%), Gaps = 45/291 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y + A+
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F
Sbjct: 109 LNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 164
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ G S+G+GFV + E A +AI +NG L ++++ G
Sbjct: 165 CKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV---------GHHISK 214
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 281
D +S E E +T VY+ NL E++ + + F G I
Sbjct: 215 KDRQSKFE-----------------EMKANFTNVYIKNLDQEISEEEFRQMFEKF--GEI 255
Query: 282 EDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
+ RD +GFGFV YSTH A A+ N + + G+ + K
Sbjct: 256 TSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQK 306
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 113/249 (45%), Gaps = 27/249 (10%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 137 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 196
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + R E+ +F NV++ +L E+++ F F +
Sbjct: 197 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEIT 256
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + DQ+ G+SRGFGFV++ + AQ+A++++N K + +++ A K +E +
Sbjct: 257 SATLSRDQE-GKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELR 315
Query: 221 SSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 280
+ +E + Q +YV NL+ ++ L F GT
Sbjct: 316 KQYEAARLEKASKY----------------QGVNLYVKNLTDDIDDEKLREMFAPY--GT 357
Query: 281 IEDVRVQRD 289
I +V RD
Sbjct: 358 ITSAKVMRD 366
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/231 (19%), Positives = 90/231 (38%), Gaps = 68/231 (29%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
+VY+ N+ +++ +++F G + L + + +GFV+Y SA A+ +
Sbjct: 230 NVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEM 289
Query: 106 NGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLF 150
N + + GQ + V A +RE+ N++V +L+ ++ D L
Sbjct: 290 NDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 349
Query: 151 ACFSVFPTCSDARVMWD---QKT------------------------------------- 170
F+ + T + A+VM D ++T
Sbjct: 350 EMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQDK 409
Query: 171 ----------GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
G+S+GFGFV F + ++A A+ ++N + + + + A +
Sbjct: 410 ENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQR 460
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEA 303
P ++YVG L VT L+ F + +G + +RV RD G+ +V Y+ +
Sbjct: 45 PHSASLYVGELDPSVTEAMLYELFSS--IGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 102
Query: 304 ALAIQMGNARILCGKPIKCSWGSK 327
A++ N ++ GKP + W +
Sbjct: 103 ERALEDLNYTLIKGKPCRIMWSQR 126
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 136/309 (44%), Gaps = 42/309 (13%)
Query: 29 QIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDK 84
Q P + + P+ + S S+YVG + P V+ ALL ++FS G + ++ I
Sbjct: 20 QTAPTTTESETPKVETSGA-SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTS 78
Query: 85 SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPE 143
Y +V++ D + AI LN I G+P ++ W+ S R+ SG N+++ +L P
Sbjct: 79 LGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSG--NIYIKNLHPA 136
Query: 144 VTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203
+ + +L FS F +V D+ G SRGFGFV F N+ DA+ AI ++G + +++
Sbjct: 137 IDNKSLHETFSTFGNILSCKVATDE-NGVSRGFGFVHFENESDARDAIEAVDGMLMNDQE 195
Query: 204 IRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSE 263
+ D +S +E E ++T VYV N+ E
Sbjct: 196 VYVALHVS---------KKDRQSKLE-----------------EVKAKFTNVYVKNIDQE 229
Query: 264 VTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGK 318
+ + F G I +++D +GFGFV + H AA A+ N G+
Sbjct: 230 TSQEEFEELFGKY--GKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQ 287
Query: 319 PIKCSWGSK 327
+ K
Sbjct: 288 KLYVGRAQK 296
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
+VYV NI + + +E+F G + L K + +GFV++ D +AA A+ L
Sbjct: 220 NVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDEL 279
Query: 106 NGRHIFGQPIKVNWA-------------YASSQREDTSGH--FNVFVGDLSPEVTDATLF 150
N GQ + V A Y +++ E + + N+FV +L + D L
Sbjct: 280 NELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLK 339
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
F+ F T + A+VM D+ TG SRGFGFV F E+A AI + N + + + + A
Sbjct: 340 EEFAPFGTITSAKVMRDE-TGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 211 K 211
+
Sbjct: 399 R 399
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 130/274 (47%), Gaps = 44/274 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP---LEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL 105
S+YVG++ P V + L ++F+ P L C+ + Y +V++ + A+ A+ +L
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 106 NGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA 162
N I +PI++ S R+ + SG NVF+ +L + + L+ FS F T
Sbjct: 120 NYAPIRDRPIRIML----SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSC 175
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
+V D GRS+G+GFV F +E AQ+AI+ LNG L ++Q+ + ++ S
Sbjct: 176 KVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR----RQDRARS 230
Query: 223 DSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIE 282
+S +V P +T VYV NL E+T +L + F G I
Sbjct: 231 ESGAV----------------------PSFTNVYVKNLPKEITDDELKKTFGKY--GDIS 266
Query: 283 DVRVQRD-----KGFGFVRYSTHPEAALAIQMGN 311
V +D + FGFV + + AA+A++ N
Sbjct: 267 SAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 300
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 129/308 (41%), Gaps = 32/308 (10%)
Query: 33 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL---IKKDKSSYGF 89
I+ N P S +V++ N+ + N L E FSS G + CK+ + YGF
Sbjct: 131 IMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGF 190
Query: 90 VDYFDRRSAALAIVTLNG-----RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEV 144
V + +A AI LNG + +F A S+ NV+V +L E+
Sbjct: 191 VQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEI 250
Query: 145 TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
TD L F + S A VM DQ +G SR FGFV+F + E A A+ +NG LG +
Sbjct: 251 TDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVL 309
Query: 205 RCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEV 264
A K + +E + + + + Q + +Y+ NL V
Sbjct: 310 YVGRAQKKSDREEELRRKFEQERISRFEKL----------------QGSNLYLKNLDDSV 353
Query: 265 TSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKP 319
L F G + +V + +GFGFV YS EA LA++ N +++ KP
Sbjct: 354 NDEKLKEMFSEY--GNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKP 411
Query: 320 IKCSWGSK 327
+ + +
Sbjct: 412 LYVALAQR 419
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 40/191 (20%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VGDL P V ++ L F+ + RV D T RS G+ +V+F N EDA A+ L
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESL 119
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTT 254
N + +R IR SN D
Sbjct: 120 NYAPIRDRPIRIML--------------------------------SNRDPSTRLSGKGN 147
Query: 255 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ-----RDKGFGFVRYSTHPEAALAIQM 309
V++ NL + + + L+ F + GTI +V R KG+GFV++ A AI
Sbjct: 148 VFIKNLDASIDNKALYETFSSF--GTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDK 205
Query: 310 GNARILCGKPI 320
N +L K +
Sbjct: 206 LNGMLLNDKQV 216
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 124/277 (44%), Gaps = 45/277 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y + A+
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F
Sbjct: 115 LNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 170
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ G S+G+GFV + E A +AI +NG L ++++ G
Sbjct: 171 CKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV---------GHHISK 220
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 281
D +S E E +T VY+ NL SE+ + + F G I
Sbjct: 221 KDRQSKFE-----------------EMKANFTNVYIKNLDSEIDDDEFRKMFEKF--GEI 261
Query: 282 EDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNAR 313
+ RD +GFGFV +STH A A++ N +
Sbjct: 262 TSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDK 298
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 27/249 (10%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 143 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + R E+ +F NV++ +L E+ D F F +
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEIT 262
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + DQ+ G+SRGFGFV+F E AQ+A+ ++N K + ++++ A K +E +
Sbjct: 263 SATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELR 321
Query: 221 SSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 280
+ +E + Q +YV NL+ ++ L F GT
Sbjct: 322 KQYEAARLEKASKY----------------QGVNLYVKNLTDDIDDEKLRELFGPY--GT 363
Query: 281 IEDVRVQRD 289
I +V RD
Sbjct: 364 ITSAKVMRD 372
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 78/192 (40%), Gaps = 39/192 (20%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VG+L P VT+A L+ FS + RV D T RS G+ +V++ N D + A+ D
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYT 253
LN + + R W S D
Sbjct: 115 LNYTLIKGKPCRIMW--------------------------------SQRDPALRKTGQG 142
Query: 254 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQ 308
V++ NL S + + LH F A G I +V +D KG+GFV Y T A AI+
Sbjct: 143 NVFIKNLDSAIDNKALHDTFAAF--GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIK 200
Query: 309 MGNARILCGKPI 320
N +L K +
Sbjct: 201 HVNGMLLNDKKV 212
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 248 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHP 301
N P ++YVG L VT L+ F + +G + +RV RD G+ +V Y+
Sbjct: 49 NQPHSASLYVGELDPSVTEAMLYELFSS--IGQVASIRVCRDAVTRRSLGYAYVNYNNTA 106
Query: 302 EAALAIQMGNARILCGKPIKCSWGSK 327
+ A++ N ++ GKP + W +
Sbjct: 107 DGERALEDLNYTLIKGKPCRIMWSQR 132
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/237 (17%), Positives = 84/237 (35%), Gaps = 74/237 (31%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
+VY+ N+ ++ + +++F G + L + + +GFV++ SA A+ +
Sbjct: 236 NVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEM 295
Query: 106 NGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLF 150
N + I Q + V A +RE+ N++V +L+ ++ D L
Sbjct: 296 NDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 355
Query: 151 ACFSVFPTCS------DARVMWDQKT---------------------------------- 170
F + T + D V DQ
Sbjct: 356 ELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKAEKAEEKPSES 415
Query: 171 ----------------GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
G+S+GFGFV F + ++A A+ ++N + + + + A +
Sbjct: 416 SEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 472
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 288 RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
+ KGFGFV +S+ EA+ A+ N R++ GKP+ + +
Sbjct: 433 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 472
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 129/290 (44%), Gaps = 42/290 (14%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y + A+
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F
Sbjct: 116 LNYTLIKGRPCRIMW----SQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 171
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ G S+G+GFV + E AQ+AI +NG L ++++ G
Sbjct: 172 CKVAQDE-FGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV---------GHHIAK 221
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV---DLHRHFHALCV 278
D +S E E +T VYV N+ + T DL F +
Sbjct: 222 KDRQSKFE-----------------EMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITS 264
Query: 279 GTI-EDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
T+ D + +GFGFV +++H AA A++ N + G+ + K
Sbjct: 265 ATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQK 314
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 111/249 (44%), Gaps = 26/249 (10%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 144 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V A R E+ +F NV+V ++ + T+ F F +
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEIT 263
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + D ++G+SRGFGFV+F + ++A +A+ LN K +++ A K +E +
Sbjct: 264 SATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELR 323
Query: 221 SSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 280
+ +E + Q +Y+ NLS ++ L F + GT
Sbjct: 324 KQYEAARIEKASKY----------------QGVNLYIKNLSDDIDDEKLRELFSSY--GT 365
Query: 281 IEDVRVQRD 289
I +V RD
Sbjct: 366 ITSAKVMRD 374
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 83/222 (37%), Gaps = 71/222 (31%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVT 104
+VYV NI T +++F G + L + +S +GFV++ +AA A+
Sbjct: 237 NVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEA 296
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATL 149
LN + GQ + V A +RE+ N+++ +LS ++ D L
Sbjct: 297 LNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 356
Query: 150 FACFSVFPTCSDARVMW---------------------------------------DQKT 170
FS + T + A+VM D K
Sbjct: 357 RELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKE 416
Query: 171 -------------GRSRGFGFVSFRNQEDAQSAINDLNGKWL 199
G+S+GFGFV F + ++A A+ ++N + +
Sbjct: 417 NKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMV 458
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEA 303
P ++YVG L VT L F + +G + +RV RD G+ +V Y+ +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSS--IGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 109
Query: 304 ALAIQMGNARILCGKPIKCSWGSK 327
A++ N ++ G+P + W +
Sbjct: 110 ERALEDLNYTLIKGRPCRIMWSQR 133
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 288 RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
+ KGFGFV +S+ EA+ A+ N R++ GKP+ + +
Sbjct: 431 KSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQR 470
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 156/341 (45%), Gaps = 67/341 (19%)
Query: 36 GNLPPRFDASTCRSVYVG------NIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGF 89
G+L P +D +T R ++ N+ N L SS GP K+ Y F
Sbjct: 59 GDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGP--------KNNQGYCF 110
Query: 90 VDYFDRRSAALAIVTLNGRHIFGQP---IKVNWAYASSQRE-------DTSGHFNVFVGD 139
VD+ AA A++ NG I P +K+NWA +S + + ++FVGD
Sbjct: 111 VDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGD 169
Query: 140 LSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198
L+P VT++ LF F + + + S A+++ DQ TG S+G+GFV F N ++ Q A++++ G +
Sbjct: 170 LAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVF 229
Query: 199 LGNRQIRCNWAAKGATSGDEKQSS-----------------DSKSVVE----LTNGISDG 237
L R I+ G TSG ++ S DS+ + + L+NG ++
Sbjct: 230 LNGRAIKV-----GPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNM 284
Query: 238 QEKSN---------EDAPENN----PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV 284
K N + P N P TTV++G LSS VT +L +F GTI V
Sbjct: 285 GFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPF--GTIVYV 342
Query: 285 RVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325
++ K GFV+Y A AI + ++ SWG
Sbjct: 343 KIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWG 383
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSSYGFVDYFDRRSAALAIVTLNG 107
+V++G + VT L+ F G + K+ + K GFV Y DR SA AI + G
Sbjct: 314 TVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGK---CCGFVQYVDRLSAEAAIAGMQG 370
Query: 108 RHIFGQPIKVNWAYASSQ 125
I ++++W ++ Q
Sbjct: 371 FPIANSRVRLSWGRSAKQ 388
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 129/275 (46%), Gaps = 45/275 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++ VT++ L + F G + + L+ + YG+V++ + + AA AI
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 105 LNGRHIFGQPIKVNWAY--ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA 162
LN ++G+PI+V +++ S +R SG N+F+ +L + L FS F
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRR---SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSC 153
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
+V D +G+S+G+GFV + N+E AQ AI LNG L ++Q+ + +Q
Sbjct: 154 KVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR-------RQER 205
Query: 223 DSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIE 282
DS + N ++T VYV NL+ T DL F G I
Sbjct: 206 DSTA---------------------NKTKFTNVYVKNLAESTTDDDLKNAFGEY--GKIT 242
Query: 283 DVRVQRD-----KGFGFVRYSTHPEAALAIQMGNA 312
V +D KGFGFV + +AA A++ N
Sbjct: 243 SAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 277
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 135/300 (45%), Gaps = 32/300 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDR 95
P S ++++ N+ + + L + FSS G + CK + D S YGFV Y +
Sbjct: 116 PSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK-VAVDSSGQSKGYGFVQYANE 174
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHF---NVFVGDLSPEVTDATLFAC 152
SA AI LNG + + + V +R+ T+ NV+V +L+ TD L
Sbjct: 175 ESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNA 234
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F + + A VM D + G+S+GFGFV+F N +DA A+ LNG +++ A K
Sbjct: 235 FGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQK- 292
Query: 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 272
K +++ V + + +K Q + +YV NL ++ L
Sbjct: 293 ------KSERETELRVRYEQNLKEAADKF---------QSSNLYVKNLDPSISDEKLKEI 337
Query: 273 FHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
F GT+ +V RD KG GFV ++T EA A+ + +++ KP+ + +
Sbjct: 338 FSPF--GTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQR 395
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAALA 306
T++YVG+L VT L F + GT+ VRV RD G+G+V ++ +AA A
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQM--GTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 307 IQMGNARILCGKPIKCSW 324
IQ N L GKPI+ +
Sbjct: 94 IQELNYIPLYGKPIRVMY 111
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 37 NLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY---GFVDYF 93
NL D ++YV N+ P +++ L+E+FS G + K+++ + GFV +
Sbjct: 307 NLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFA 366
Query: 94 DRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR 126
A A+ L+G+ I +P+ V A R
Sbjct: 367 TPEEATEAMSQLSGKMIESKPLYVAIAQRKEDR 399
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 123/277 (44%), Gaps = 45/277 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y D A+
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F
Sbjct: 103 LNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 158
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ G S+G+GFV + E A +AI +NG L ++++ G
Sbjct: 159 CKVAQDE-FGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV---------GHHISK 208
Query: 222 SDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 281
D +S E E +T +Y+ N+ EV + + F G I
Sbjct: 209 KDRQSKFE-----------------EMKANFTNIYIKNIDPEVEDEEFRKLFEKF--GEI 249
Query: 282 EDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNAR 313
+ RD +GFGFV +STH A A++ N +
Sbjct: 250 TSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDK 286
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 27/249 (10%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 131 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + R E+ +F N+++ ++ PEV D F F +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEIT 250
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + D + G+SRGFGFV+F E AQ+A+ ++N K + ++++ A K +E +
Sbjct: 251 SATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELR 309
Query: 221 SSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 280
+ +E + Q +YV NL+ +V L F GT
Sbjct: 310 KQYEAARMEKASKY----------------QGVNLYVKNLTDDVDDDKLRELFGPY--GT 351
Query: 281 IEDVRVQRD 289
I +V RD
Sbjct: 352 ITSAKVMRD 360
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 39/192 (20%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VG+L P VT+A L+ FS + RV D T RS G+ +V++ + + A+++
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYT 253
LN + + R W S D
Sbjct: 103 LNYTLIKGKPCRIMW--------------------------------SQRDPALRKTGQG 130
Query: 254 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQ 308
V++ NL S + + LH F A G I +V +D KG+GFV Y T A AI+
Sbjct: 131 NVFIKNLDSAIDNKALHDTFAAF--GNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIK 188
Query: 309 MGNARILCGKPI 320
N +L K +
Sbjct: 189 HVNGMLLNDKKV 200
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 90/231 (38%), Gaps = 68/231 (29%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++Y+ NI P+V + +++F G + L + + +GFV++ SA A+ +
Sbjct: 224 NIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEM 283
Query: 106 NGRHIFGQPIKVNWA-------------YASSQREDTSGH--FNVFVGDLSPEVTDATLF 150
N + + Q + V A Y +++ E S + N++V +L+ +V D L
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 343
Query: 151 ACFSVFPTCSDARVMWD------------------------------------------- 167
F + T + A+VM D
Sbjct: 344 ELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKE 403
Query: 168 -------QKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
+ G+S+GFGFV F + ++A A+ ++N + + + + A +
Sbjct: 404 AEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 454
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 23/124 (18%)
Query: 220 QSSDSKSVVELTNGISDGQEKSNEDAPE----------NNPQYTTVYVGNLSSEVTSVDL 269
++S + + E TNG D N APE + P ++YVG L VT L
Sbjct: 4 ETSTTPAPAENTNGTPD-----NAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAML 58
Query: 270 HRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323
+ F + +G + +RV RD G+ +V Y+ A+ N ++ GKP +
Sbjct: 59 YELFSS--IGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIM 116
Query: 324 WGSK 327
W +
Sbjct: 117 WSQR 120
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 288 RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327
+ KGFGFV +S+ EA+ A+ N R++ GKP+ + +
Sbjct: 415 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 454
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 96/174 (55%), Gaps = 7/174 (4%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
++YVG + +V+ ++L E+ GP+ + + + +GFV++ A AI
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-R 163
LN ++G+PIKVN A A + D N+FVG+L PEV + L+ FS F +
Sbjct: 74 LNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGD 217
+M D +G S+GF F++F + E + +A+ +NG++L NR I ++A K + G+
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGE 185
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 87/227 (38%), Gaps = 49/227 (21%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG L +V+++ L+ + D+ T +GFGFV F +EDA AI L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTT 254
N L + I+ N A S EK N D N
Sbjct: 75 NMIKLYGKPIKVNKA-----SAHEK----------------------NMDVGAN------ 101
Query: 255 VYVGNLSSEVTSVDLHRHFHALCV-----GTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 309
++VGNL EV L+ F A V + DV KGF F+ +++ + A++
Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161
Query: 310 GNARILCGKPIKCSWGSKPTPPG-----------TSSTPLPPPPAPH 345
N + LC + I S+ K G + PL P PH
Sbjct: 162 MNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPH 208
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAA 304
Q T+YVG L +V+ L + G + V + +D+ GFGFV + +A
Sbjct: 11 QDATIYVGGLDEKVSESILWELM--VQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68
Query: 305 LAIQMGNARILCGKPIKCSWGS 326
AI++ N L GKPIK + S
Sbjct: 69 YAIKILNMIKLYGKPIKVNKAS 90
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,801,970
Number of Sequences: 539616
Number of extensions: 6621935
Number of successful extensions: 38317
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 286
Number of HSP's that attempted gapping in prelim test: 34014
Number of HSP's gapped (non-prelim): 3275
length of query: 412
length of database: 191,569,459
effective HSP length: 120
effective length of query: 292
effective length of database: 126,815,539
effective search space: 37030137388
effective search space used: 37030137388
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)