Query 015149
Match_columns 412
No_of_seqs 310 out of 2670
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 03:34:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.7E-47 5.8E-52 360.1 34.6 279 46-329 2-350 (352)
2 KOG0145 RNA-binding protein EL 100.0 4.8E-46 1E-50 308.5 26.7 289 35-328 28-358 (360)
3 KOG0148 Apoptosis-promoting RN 100.0 7.8E-45 1.7E-49 303.2 20.9 238 43-331 2-241 (321)
4 KOG0117 Heterogeneous nuclear 100.0 4.6E-43 1E-47 311.9 26.6 244 45-330 81-333 (506)
5 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.2E-41 4.9E-46 329.2 33.9 275 46-328 1-351 (481)
6 TIGR01628 PABP-1234 polyadenyl 100.0 5.5E-42 1.2E-46 342.1 29.3 265 45-328 86-364 (562)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 1.4E-41 3E-46 327.4 30.3 246 45-330 56-309 (578)
8 TIGR01628 PABP-1234 polyadenyl 100.0 9.4E-42 2E-46 340.4 30.2 248 49-329 2-262 (562)
9 TIGR01645 half-pint poly-U bin 100.0 2.3E-40 5.1E-45 319.1 34.5 167 46-212 106-284 (612)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.3E-40 1.6E-44 318.6 34.5 275 47-328 96-480 (481)
11 TIGR01622 SF-CC1 splicing fact 100.0 4.1E-39 8.9E-44 314.5 34.3 281 44-327 86-447 (457)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 5.3E-39 1.2E-43 318.1 33.4 273 43-326 171-500 (509)
13 KOG0127 Nucleolar protein fibr 100.0 4.3E-37 9.3E-42 279.9 26.8 277 48-328 6-378 (678)
14 KOG0144 RNA-binding protein CU 100.0 1.8E-37 3.9E-42 275.0 19.4 282 45-331 32-507 (510)
15 TIGR01645 half-pint poly-U bin 100.0 1.5E-33 3.2E-38 272.1 24.9 174 131-329 106-285 (612)
16 KOG0123 Polyadenylate-binding 100.0 1.5E-32 3.3E-37 253.8 22.5 238 48-327 2-245 (369)
17 TIGR01659 sex-lethal sex-letha 100.0 2.6E-32 5.6E-37 251.1 23.6 169 43-214 103-277 (346)
18 TIGR01659 sex-lethal sex-letha 100.0 2E-32 4.3E-37 251.9 21.8 168 127-330 102-277 (346)
19 KOG0124 Polypyrimidine tract-b 100.0 2.7E-31 5.9E-36 230.9 21.3 165 48-212 114-290 (544)
20 KOG0123 Polyadenylate-binding 100.0 2.3E-31 5.1E-36 245.9 19.2 258 49-326 78-347 (369)
21 KOG0110 RNA-binding protein (R 100.0 1.7E-30 3.6E-35 244.7 19.1 258 43-329 381-694 (725)
22 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.8E-29 8.3E-34 236.3 21.5 163 131-329 2-172 (352)
23 KOG0147 Transcriptional coacti 100.0 1.6E-29 3.5E-34 232.0 15.2 282 42-326 174-526 (549)
24 KOG0144 RNA-binding protein CU 100.0 1.2E-29 2.7E-34 225.3 13.4 166 129-329 31-207 (510)
25 KOG0127 Nucleolar protein fibr 100.0 5.3E-29 1.1E-33 227.4 16.8 264 47-310 117-516 (678)
26 TIGR01622 SF-CC1 splicing fact 100.0 1E-27 2.2E-32 234.3 24.8 176 129-329 86-267 (457)
27 KOG0148 Apoptosis-promoting RN 100.0 4.5E-28 9.8E-33 203.0 18.3 164 43-212 58-238 (321)
28 KOG0124 Polypyrimidine tract-b 100.0 1.4E-28 3.1E-33 214.0 12.5 210 133-372 114-329 (544)
29 TIGR01648 hnRNP-R-Q heterogene 100.0 1.9E-27 4.2E-32 229.7 21.1 193 95-329 19-223 (578)
30 KOG0145 RNA-binding protein EL 99.9 7.3E-27 1.6E-31 194.5 15.1 166 129-330 38-211 (360)
31 KOG4212 RNA-binding protein hn 99.9 4.3E-25 9.4E-30 196.6 26.2 163 45-208 42-290 (608)
32 KOG0131 Splicing factor 3b, su 99.9 1.1E-26 2.4E-31 183.7 13.7 172 43-216 5-181 (203)
33 KOG0117 Heterogeneous nuclear 99.9 8.7E-26 1.9E-30 201.9 20.6 198 91-334 40-254 (506)
34 KOG0131 Splicing factor 3b, su 99.9 1.4E-26 3.1E-31 183.1 12.8 170 128-332 5-181 (203)
35 KOG1190 Polypyrimidine tract-b 99.9 3E-24 6.4E-29 190.0 23.7 275 47-327 150-490 (492)
36 KOG0109 RNA-binding protein LA 99.9 2E-25 4.4E-30 189.1 11.6 149 133-329 3-151 (346)
37 KOG1190 Polypyrimidine tract-b 99.9 3.5E-24 7.6E-29 189.5 18.6 278 44-329 25-374 (492)
38 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.7E-24 1.7E-28 209.9 22.9 187 128-328 171-375 (509)
39 KOG0109 RNA-binding protein LA 99.9 9.8E-25 2.1E-29 184.9 10.5 148 49-213 4-151 (346)
40 KOG4211 Splicing factor hnRNP- 99.9 2.5E-22 5.5E-27 182.5 23.2 275 43-325 6-355 (510)
41 KOG0110 RNA-binding protein (R 99.9 2.4E-22 5.2E-27 190.0 12.7 165 49-213 517-694 (725)
42 KOG0146 RNA-binding protein ET 99.9 4.8E-22 1E-26 166.5 12.7 176 38-213 10-366 (371)
43 KOG0146 RNA-binding protein ET 99.9 9.8E-22 2.1E-26 164.7 13.0 213 112-330 2-367 (371)
44 KOG0105 Alternative splicing f 99.9 2E-20 4.4E-25 148.4 19.1 173 130-316 4-176 (241)
45 KOG0147 Transcriptional coacti 99.9 3E-22 6.5E-27 184.4 9.4 182 130-334 177-364 (549)
46 KOG1456 Heterogeneous nuclear 99.9 4.3E-19 9.3E-24 155.6 26.6 276 46-328 119-491 (494)
47 KOG1456 Heterogeneous nuclear 99.9 6.1E-19 1.3E-23 154.7 25.7 278 43-329 27-364 (494)
48 KOG4205 RNA-binding protein mu 99.8 3.9E-21 8.4E-26 171.6 10.9 169 46-216 5-180 (311)
49 KOG0120 Splicing factor U2AF, 99.8 1.2E-20 2.6E-25 176.4 14.2 266 45-325 173-489 (500)
50 KOG4205 RNA-binding protein mu 99.8 6.7E-21 1.5E-25 170.1 11.3 168 131-330 5-178 (311)
51 KOG0105 Alternative splicing f 99.8 2.9E-20 6.2E-25 147.5 13.4 156 45-207 4-185 (241)
52 KOG4206 Spliceosomal protein s 99.8 1.7E-19 3.8E-24 149.1 17.8 191 130-326 7-220 (221)
53 KOG1365 RNA-binding protein Fu 99.8 5.3E-20 1.1E-24 161.8 11.0 277 43-326 56-360 (508)
54 KOG4206 Spliceosomal protein s 99.8 1.2E-18 2.5E-23 144.3 15.8 161 45-210 7-220 (221)
55 KOG4212 RNA-binding protein hn 99.8 1.1E-17 2.5E-22 149.6 16.9 193 132-327 44-293 (608)
56 PLN03134 glycine-rich RNA-bind 99.7 2E-17 4.2E-22 133.6 12.4 86 129-214 31-116 (144)
57 KOG1457 RNA binding protein (c 99.7 6.6E-17 1.4E-21 132.4 14.5 184 130-315 32-273 (284)
58 KOG4211 Splicing factor hnRNP- 99.7 8.4E-17 1.8E-21 146.8 15.7 167 129-325 7-179 (510)
59 KOG0106 Alternative splicing f 99.7 1.6E-17 3.4E-22 139.2 8.7 165 134-324 3-167 (216)
60 KOG1457 RNA binding protein (c 99.7 4.8E-16 1E-20 127.4 15.7 154 42-199 29-273 (284)
61 KOG1548 Transcription elongati 99.7 8.2E-16 1.8E-20 134.2 17.3 191 131-326 133-350 (382)
62 KOG0106 Alternative splicing f 99.7 3.5E-17 7.5E-22 137.2 7.6 149 49-209 3-168 (216)
63 PLN03134 glycine-rich RNA-bind 99.7 3.5E-16 7.6E-21 126.3 13.2 78 251-330 33-116 (144)
64 KOG1548 Transcription elongati 99.6 2.2E-14 4.8E-19 125.4 17.6 165 44-212 131-352 (382)
65 KOG0122 Translation initiation 99.6 2.2E-15 4.9E-20 125.5 10.0 85 128-212 185-269 (270)
66 PF00076 RRM_1: RNA recognitio 99.6 9E-15 1.9E-19 103.7 9.4 70 135-205 1-70 (70)
67 KOG0125 Ataxin 2-binding prote 99.6 1.6E-14 3.4E-19 125.4 12.5 78 251-330 95-176 (376)
68 KOG0149 Predicted RNA-binding 99.6 5E-15 1.1E-19 123.0 7.9 79 133-212 13-91 (247)
69 KOG0114 Predicted RNA-binding 99.6 1.7E-14 3.7E-19 103.7 9.5 88 36-123 7-95 (124)
70 KOG0107 Alternative splicing f 99.6 1.1E-14 2.3E-19 115.3 9.0 79 46-125 9-87 (195)
71 PF00076 RRM_1: RNA recognitio 99.6 1.5E-14 3.3E-19 102.5 8.7 65 255-321 1-70 (70)
72 PLN03120 nucleic acid binding 99.6 3.2E-14 6.9E-19 122.7 12.0 75 253-330 5-82 (260)
73 KOG0125 Ataxin 2-binding prote 99.6 1.8E-14 3.9E-19 125.0 9.8 102 106-212 73-174 (376)
74 PF14259 RRM_6: RNA recognitio 99.5 5.1E-14 1.1E-18 99.8 9.2 70 135-205 1-70 (70)
75 PLN03120 nucleic acid binding 99.5 7E-14 1.5E-18 120.6 10.8 76 47-123 4-80 (260)
76 KOG0122 Translation initiation 99.5 9.8E-14 2.1E-18 115.8 10.8 79 45-123 187-269 (270)
77 KOG0126 Predicted RNA-binding 99.5 1.7E-15 3.7E-20 120.3 0.3 88 128-215 31-118 (219)
78 KOG0114 Predicted RNA-binding 99.5 1.1E-13 2.5E-18 99.5 8.5 71 253-325 19-92 (124)
79 COG0724 RNA-binding proteins ( 99.5 4E-13 8.7E-18 123.0 14.6 145 132-289 115-260 (306)
80 KOG0108 mRNA cleavage and poly 99.5 3.3E-14 7.2E-19 133.0 7.3 82 133-214 19-100 (435)
81 KOG0113 U1 small nuclear ribon 99.5 1.5E-13 3.2E-18 117.9 10.3 86 126-211 95-180 (335)
82 KOG0121 Nuclear cap-binding pr 99.5 7.8E-14 1.7E-18 104.4 7.3 82 131-212 35-116 (153)
83 PF14259 RRM_6: RNA recognitio 99.5 1.8E-13 3.8E-18 97.0 8.7 65 255-321 1-70 (70)
84 KOG0121 Nuclear cap-binding pr 99.5 1.5E-13 3.2E-18 102.9 6.6 74 251-326 35-114 (153)
85 KOG0107 Alternative splicing f 99.5 2E-13 4.3E-18 108.2 7.4 76 253-330 11-87 (195)
86 KOG4207 Predicted splicing fac 99.4 1.7E-13 3.8E-18 111.2 6.8 86 128-213 9-94 (256)
87 KOG4307 RNA binding protein RB 99.4 8.2E-13 1.8E-17 125.2 12.2 179 30-212 295-514 (944)
88 KOG4660 Protein Mei2, essentia 99.4 2E-12 4.3E-17 120.4 14.5 160 44-212 72-250 (549)
89 KOG0130 RNA-binding protein RB 99.4 2.5E-13 5.4E-18 102.6 7.0 84 129-212 69-152 (170)
90 KOG4307 RNA binding protein RB 99.4 3E-12 6.5E-17 121.4 15.7 186 135-324 314-510 (944)
91 PLN03213 repressor of silencin 99.4 6.2E-13 1.3E-17 121.4 9.5 77 46-122 9-87 (759)
92 KOG0111 Cyclophilin-type pepti 99.4 2E-13 4.4E-18 111.8 5.6 87 130-216 8-94 (298)
93 KOG4207 Predicted splicing fac 99.4 3.1E-13 6.7E-18 109.8 6.5 78 251-330 12-95 (256)
94 COG0724 RNA-binding proteins ( 99.4 2.9E-12 6.2E-17 117.3 14.0 146 47-192 115-285 (306)
95 PLN03121 nucleic acid binding 99.4 1.8E-12 3.9E-17 110.0 11.4 74 252-328 5-81 (243)
96 PLN03213 repressor of silencin 99.4 8.7E-13 1.9E-17 120.4 9.6 75 251-327 9-87 (759)
97 KOG0120 Splicing factor U2AF, 99.4 3.1E-12 6.6E-17 120.5 12.2 167 45-211 287-491 (500)
98 smart00362 RRM_2 RNA recogniti 99.4 2.5E-12 5.5E-17 91.2 9.2 68 254-323 1-72 (72)
99 PF13893 RRM_5: RNA recognitio 99.4 2.3E-12 5E-17 86.6 8.4 55 269-325 1-56 (56)
100 PLN03121 nucleic acid binding 99.4 3.1E-12 6.7E-17 108.6 10.9 78 131-212 4-81 (243)
101 smart00362 RRM_2 RNA recogniti 99.4 3.5E-12 7.7E-17 90.4 9.4 71 134-206 1-71 (72)
102 KOG1365 RNA-binding protein Fu 99.4 2.7E-12 5.8E-17 113.7 9.9 163 47-211 161-361 (508)
103 KOG0111 Cyclophilin-type pepti 99.4 5.1E-13 1.1E-17 109.5 5.0 86 252-339 10-101 (298)
104 smart00360 RRM RNA recognition 99.4 4.2E-12 9.1E-17 89.7 8.7 70 137-206 1-70 (71)
105 KOG0130 RNA-binding protein RB 99.3 3E-12 6.6E-17 96.8 7.2 82 247-330 67-154 (170)
106 KOG0113 U1 small nuclear ribon 99.3 1E-11 2.2E-16 106.8 10.7 81 247-329 96-182 (335)
107 KOG0149 Predicted RNA-binding 99.3 5.5E-12 1.2E-16 105.1 8.5 75 250-327 10-90 (247)
108 PF13893 RRM_5: RNA recognitio 99.3 7E-12 1.5E-16 84.3 7.5 56 64-120 1-56 (56)
109 KOG0128 RNA-binding protein SA 99.3 2.5E-13 5.5E-18 131.9 -0.3 228 46-327 570-814 (881)
110 KOG0129 Predicted RNA-binding 99.3 8.4E-11 1.8E-15 108.8 15.5 167 126-309 253-432 (520)
111 cd00590 RRM RRM (RNA recogniti 99.3 3.3E-11 7.1E-16 85.9 9.9 74 134-208 1-74 (74)
112 cd00590 RRM RRM (RNA recogniti 99.3 3E-11 6.6E-16 86.1 9.6 69 254-324 1-74 (74)
113 smart00360 RRM RNA recognition 99.3 1.8E-11 4E-16 86.4 7.8 67 52-118 1-71 (71)
114 smart00361 RRM_1 RNA recogniti 99.3 3.5E-11 7.5E-16 84.8 8.4 61 146-206 2-69 (70)
115 KOG0129 Predicted RNA-binding 99.3 2E-10 4.4E-15 106.3 15.5 149 43-192 255-431 (520)
116 KOG0126 Predicted RNA-binding 99.2 2.3E-12 5E-17 102.7 0.2 75 253-329 36-116 (219)
117 KOG0108 mRNA cleavage and poly 99.2 5E-11 1.1E-15 111.8 7.7 75 253-329 19-99 (435)
118 KOG4454 RNA binding protein (R 99.2 5.6E-12 1.2E-16 103.5 0.9 147 45-204 7-155 (267)
119 KOG0132 RNA polymerase II C-te 99.2 6.5E-11 1.4E-15 114.1 8.0 105 48-154 422-528 (894)
120 KOG0128 RNA-binding protein SA 99.1 3.9E-11 8.6E-16 116.9 4.0 146 45-211 665-814 (881)
121 KOG0132 RNA polymerase II C-te 99.1 2.1E-10 4.5E-15 110.7 8.0 78 252-331 421-498 (894)
122 KOG0226 RNA-binding proteins [ 99.1 9.9E-11 2.1E-15 98.5 5.0 161 50-210 99-268 (290)
123 KOG0153 Predicted RNA-binding 99.1 4.7E-10 1E-14 98.7 9.3 81 246-328 222-303 (377)
124 smart00361 RRM_1 RNA recogniti 99.1 5E-10 1.1E-14 78.8 7.4 56 266-323 2-70 (70)
125 KOG4208 Nucleolar RNA-binding 99.1 7.8E-10 1.7E-14 90.6 8.7 86 127-212 44-130 (214)
126 KOG0112 Large RNA-binding prot 99.0 2.7E-10 5.9E-15 111.7 5.3 163 130-331 370-534 (975)
127 KOG0415 Predicted peptidyl pro 99.0 7.6E-10 1.6E-14 97.4 6.4 84 129-212 236-319 (479)
128 KOG0112 Large RNA-binding prot 99.0 3.9E-10 8.5E-15 110.6 4.9 163 42-215 367-534 (975)
129 KOG0153 Predicted RNA-binding 99.0 3.9E-09 8.5E-14 93.0 9.4 82 40-123 221-303 (377)
130 KOG4661 Hsp27-ERE-TATA-binding 98.9 5.9E-09 1.3E-13 97.3 10.4 78 250-329 403-486 (940)
131 KOG4661 Hsp27-ERE-TATA-binding 98.9 6.2E-09 1.3E-13 97.2 8.3 82 132-213 405-486 (940)
132 KOG0415 Predicted peptidyl pro 98.9 5.7E-09 1.2E-13 92.0 6.8 78 248-327 235-318 (479)
133 KOG4210 Nuclear localization s 98.8 3.7E-09 8E-14 94.9 5.5 168 45-213 86-265 (285)
134 KOG4210 Nuclear localization s 98.8 4.2E-09 9E-14 94.6 5.5 174 131-330 87-266 (285)
135 KOG4660 Protein Mei2, essentia 98.8 5E-09 1.1E-13 98.1 5.9 180 126-327 69-249 (549)
136 KOG4454 RNA binding protein (R 98.8 1.2E-09 2.5E-14 90.1 0.0 142 130-322 7-157 (267)
137 KOG4208 Nucleolar RNA-binding 98.8 2.4E-08 5.1E-13 82.0 7.3 75 253-328 50-130 (214)
138 KOG0226 RNA-binding proteins [ 98.7 1.1E-08 2.3E-13 86.5 4.8 161 133-324 97-266 (290)
139 PF11608 Limkain-b1: Limkain b 98.7 1.4E-07 2.9E-12 66.0 8.1 70 253-327 3-76 (90)
140 KOG0533 RRM motif-containing p 98.7 1.2E-07 2.5E-12 82.1 8.6 86 129-215 80-165 (243)
141 PF04059 RRM_2: RNA recognitio 98.6 2.2E-07 4.7E-12 68.6 8.6 76 253-328 2-87 (97)
142 KOG2193 IGF-II mRNA-binding pr 98.6 3.5E-09 7.5E-14 95.4 -2.1 150 133-326 2-155 (584)
143 PF04059 RRM_2: RNA recognitio 98.6 3.7E-07 8.1E-12 67.4 8.9 78 133-210 2-85 (97)
144 KOG0151 Predicted splicing reg 98.6 1.3E-07 2.8E-12 90.9 8.1 74 48-121 175-255 (877)
145 KOG0533 RRM motif-containing p 98.6 2.6E-07 5.7E-12 79.9 8.4 79 249-329 80-163 (243)
146 PF11608 Limkain-b1: Limkain b 98.6 3.9E-07 8.4E-12 63.7 7.6 72 48-125 3-79 (90)
147 KOG0116 RasGAP SH3 binding pro 98.5 2.1E-07 4.5E-12 87.2 6.9 77 45-122 286-366 (419)
148 KOG0151 Predicted splicing reg 98.5 7.8E-07 1.7E-11 85.7 10.1 79 249-329 171-258 (877)
149 KOG0116 RasGAP SH3 binding pro 98.4 4.1E-07 8.8E-12 85.3 7.0 80 133-213 289-368 (419)
150 KOG2193 IGF-II mRNA-binding pr 98.4 4.2E-08 9.1E-13 88.6 -0.2 152 49-212 3-157 (584)
151 KOG4209 Splicing factor RNPS1, 98.4 4.4E-07 9.6E-12 78.8 6.0 85 127-212 96-180 (231)
152 KOG4676 Splicing factor, argin 98.3 9.1E-07 2E-11 79.4 4.7 186 133-322 8-220 (479)
153 KOG4209 Splicing factor RNPS1, 98.3 1.8E-06 3.8E-11 75.1 6.1 77 251-330 100-182 (231)
154 PF08777 RRM_3: RNA binding mo 98.2 4.9E-06 1.1E-10 63.1 6.1 69 253-323 2-75 (105)
155 KOG4676 Splicing factor, argin 98.2 1.3E-06 2.8E-11 78.5 3.1 149 48-202 8-216 (479)
156 KOG0115 RNA-binding protein p5 97.9 3.5E-05 7.6E-10 65.8 6.6 100 97-207 6-109 (275)
157 COG5175 MOT2 Transcriptional r 97.8 3.3E-05 7.2E-10 68.2 5.9 76 48-123 115-203 (480)
158 PF08777 RRM_3: RNA binding mo 97.8 5E-05 1.1E-09 57.6 5.6 59 48-108 2-60 (105)
159 PF14605 Nup35_RRM_2: Nup53/35 97.7 8.3E-05 1.8E-09 48.6 5.1 53 47-102 1-53 (53)
160 COG5175 MOT2 Transcriptional r 97.7 7.8E-05 1.7E-09 65.9 6.4 73 253-327 115-202 (480)
161 KOG1995 Conserved Zn-finger pr 97.7 4.1E-05 8.8E-10 68.7 4.1 85 129-213 63-155 (351)
162 KOG2416 Acinus (induces apopto 97.6 4.7E-05 1E-09 72.4 4.2 84 243-327 435-521 (718)
163 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00018 3.9E-09 47.0 5.4 52 253-307 2-53 (53)
164 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00037 8.1E-09 51.9 6.9 70 253-326 7-90 (100)
165 KOG1995 Conserved Zn-finger pr 97.5 0.00015 3.3E-09 65.1 4.8 80 249-330 63-156 (351)
166 KOG1855 Predicted RNA-binding 97.4 0.00036 7.8E-09 64.0 6.5 62 250-313 229-309 (484)
167 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.001 2.2E-08 49.6 7.5 74 46-121 5-90 (100)
168 KOG3152 TBP-binding protein, a 97.4 0.00012 2.7E-09 62.5 2.9 73 131-203 73-157 (278)
169 KOG0115 RNA-binding protein p5 97.3 0.00072 1.6E-08 58.0 6.3 83 186-311 6-93 (275)
170 KOG1996 mRNA splicing factor [ 97.2 0.0009 1.9E-08 58.3 6.6 61 61-121 300-365 (378)
171 KOG3152 TBP-binding protein, a 97.2 0.00022 4.8E-09 61.0 2.7 67 48-114 75-157 (278)
172 KOG4849 mRNA cleavage factor I 97.2 0.00048 1E-08 61.4 4.7 77 131-207 79-157 (498)
173 KOG2135 Proteins containing th 97.2 0.0006 1.3E-08 63.4 5.2 75 253-330 373-448 (526)
174 KOG2202 U2 snRNP splicing fact 97.2 0.00021 4.5E-09 61.3 2.1 58 267-326 83-146 (260)
175 PF08952 DUF1866: Domain of un 97.1 0.0032 7E-08 49.9 8.2 81 244-329 19-108 (146)
176 KOG2202 U2 snRNP splicing fact 97.1 0.00033 7.1E-09 60.1 2.8 60 62-121 83-146 (260)
177 KOG2314 Translation initiation 97.1 0.0031 6.8E-08 60.0 8.9 77 130-207 56-139 (698)
178 KOG1855 Predicted RNA-binding 97.0 0.0035 7.7E-08 57.7 8.8 73 127-199 226-311 (484)
179 KOG2416 Acinus (induces apopto 97.0 0.00097 2.1E-08 63.7 5.2 80 40-121 437-520 (718)
180 PF10309 DUF2414: Protein of u 96.9 0.0051 1.1E-07 41.2 6.6 53 48-105 6-62 (62)
181 KOG1996 mRNA splicing factor [ 96.9 0.0026 5.6E-08 55.6 6.5 71 253-325 282-364 (378)
182 PF08675 RNA_bind: RNA binding 96.9 0.0039 8.4E-08 44.0 5.9 54 49-107 11-64 (87)
183 PF08952 DUF1866: Domain of un 96.7 0.0063 1.4E-07 48.3 6.3 58 62-124 51-108 (146)
184 KOG4849 mRNA cleavage factor I 96.6 0.0035 7.6E-08 56.0 5.2 72 251-322 79-156 (498)
185 KOG2314 Translation initiation 96.5 0.0097 2.1E-07 56.8 7.4 70 253-324 59-140 (698)
186 PF04847 Calcipressin: Calcipr 96.4 0.011 2.4E-07 49.6 6.7 63 265-329 8-72 (184)
187 PF10309 DUF2414: Protein of u 96.2 0.037 8E-07 37.1 6.8 56 253-310 6-62 (62)
188 KOG2135 Proteins containing th 96.0 0.0062 1.3E-07 56.9 3.5 77 45-124 370-447 (526)
189 KOG2591 c-Mpl binding protein, 96.0 0.02 4.2E-07 54.7 6.7 96 95-206 147-246 (684)
190 KOG2591 c-Mpl binding protein, 95.9 0.022 4.9E-07 54.3 6.5 69 253-322 176-246 (684)
191 PF07576 BRAP2: BRCA1-associat 95.7 0.12 2.6E-06 39.4 8.8 67 46-112 12-81 (110)
192 PF08675 RNA_bind: RNA binding 95.7 0.045 9.7E-07 38.8 5.9 55 133-195 9-63 (87)
193 PF10567 Nab6_mRNP_bdg: RNA-re 95.7 0.33 7.2E-06 43.0 12.6 157 38-195 6-212 (309)
194 PF07292 NID: Nmi/IFP 35 domai 95.7 0.017 3.8E-07 41.7 4.0 74 177-275 1-75 (88)
195 PF07576 BRAP2: BRCA1-associat 95.5 0.16 3.4E-06 38.7 8.9 64 253-317 14-81 (110)
196 PF15023 DUF4523: Protein of u 95.4 0.083 1.8E-06 41.4 7.2 74 248-325 82-159 (166)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 95.2 0.019 4.1E-07 48.1 3.3 78 45-122 5-97 (176)
198 KOG0804 Cytoplasmic Zn-finger 95.1 0.092 2E-06 49.1 7.8 69 44-112 71-142 (493)
199 KOG2068 MOT2 transcription fac 95.1 0.0081 1.7E-07 54.0 0.9 80 133-212 78-163 (327)
200 KOG4019 Calcineurin-mediated s 94.8 0.065 1.4E-06 43.8 5.2 79 253-333 11-95 (193)
201 PF15023 DUF4523: Protein of u 94.8 0.12 2.6E-06 40.5 6.4 75 130-212 84-162 (166)
202 PF04847 Calcipressin: Calcipr 94.8 0.083 1.8E-06 44.4 6.0 61 60-122 8-70 (184)
203 KOG4574 RNA-binding protein (c 94.6 0.051 1.1E-06 54.6 4.9 74 254-329 300-375 (1007)
204 KOG2253 U1 snRNP complex, subu 94.5 0.02 4.4E-07 55.9 1.9 109 43-156 36-159 (668)
205 PF03467 Smg4_UPF3: Smg-4/UPF3 94.5 0.051 1.1E-06 45.5 4.1 81 131-211 6-97 (176)
206 KOG4285 Mitotic phosphoprotein 94.4 0.15 3.3E-06 45.1 7.0 71 254-328 199-270 (350)
207 KOG4285 Mitotic phosphoprotein 94.1 0.19 4E-06 44.6 6.9 70 50-123 200-270 (350)
208 KOG2068 MOT2 transcription fac 93.9 0.021 4.6E-07 51.4 0.8 74 253-328 78-163 (327)
209 PF07292 NID: Nmi/IFP 35 domai 93.6 0.075 1.6E-06 38.5 2.9 66 88-153 1-73 (88)
210 KOG0804 Cytoplasmic Zn-finger 93.2 0.45 9.8E-06 44.7 8.0 68 131-200 73-141 (493)
211 PF11767 SET_assoc: Histone ly 92.7 0.59 1.3E-05 31.9 6.1 55 263-322 11-65 (66)
212 PF11767 SET_assoc: Histone ly 92.4 0.8 1.7E-05 31.2 6.5 55 143-206 11-65 (66)
213 KOG4574 RNA-binding protein (c 92.4 0.1 2.2E-06 52.6 2.9 72 50-123 301-374 (1007)
214 PF03880 DbpA: DbpA RNA bindin 91.9 0.82 1.8E-05 32.1 6.4 61 262-325 11-74 (74)
215 PF10567 Nab6_mRNP_bdg: RNA-re 91.1 11 0.00024 33.8 14.5 189 129-326 12-230 (309)
216 KOG2253 U1 snRNP complex, subu 90.8 0.23 5E-06 48.9 3.5 77 244-325 32-108 (668)
217 PF14111 DUF4283: Domain of un 90.5 0.39 8.4E-06 39.2 4.2 106 58-165 28-138 (153)
218 KOG2318 Uncharacterized conser 90.3 1 2.3E-05 43.7 7.2 38 130-167 172-214 (650)
219 PF03880 DbpA: DbpA RNA bindin 88.7 1.1 2.3E-05 31.5 4.7 58 58-120 12-74 (74)
220 KOG4410 5-formyltetrahydrofola 88.5 1.4 3.1E-05 38.8 6.1 58 38-96 321-378 (396)
221 KOG2318 Uncharacterized conser 87.6 2.6 5.7E-05 41.1 7.8 78 44-121 171-306 (650)
222 KOG2891 Surface glycoprotein [ 82.5 0.9 2E-05 39.8 2.1 76 252-329 149-269 (445)
223 KOG4483 Uncharacterized conser 81.4 5.7 0.00012 37.0 6.8 58 42-102 386-444 (528)
224 COG5624 TAF61 Transcription in 80.7 1.7 3.7E-05 40.3 3.3 39 5-43 230-268 (505)
225 PF14111 DUF4283: Domain of un 76.0 2.2 4.7E-05 34.7 2.4 85 174-289 55-140 (153)
226 KOG2891 Surface glycoprotein [ 68.0 2.3 5E-05 37.3 0.8 67 44-110 146-247 (445)
227 PRK14548 50S ribosomal protein 67.4 17 0.00037 26.2 5.0 56 50-105 23-81 (84)
228 KOG4019 Calcineurin-mediated s 65.1 8.4 0.00018 31.9 3.4 74 47-122 10-89 (193)
229 PF03468 XS: XS domain; Inter 63.7 12 0.00026 28.9 3.9 49 253-301 9-67 (116)
230 KOG4483 Uncharacterized conser 63.0 18 0.00038 33.9 5.4 55 253-309 392-446 (528)
231 KOG4410 5-formyltetrahydrofola 62.5 24 0.00052 31.4 5.9 48 252-300 330-377 (396)
232 TIGR03636 L23_arch archaeal ri 59.7 31 0.00066 24.4 5.1 56 50-105 16-74 (77)
233 PF03468 XS: XS domain; Inter 59.1 12 0.00026 28.9 3.2 53 49-102 10-74 (116)
234 PF06752 E_Pc_C: Enhancer of P 57.1 14 0.00029 31.8 3.4 6 2-7 8-13 (230)
235 COG5638 Uncharacterized conser 56.0 53 0.0012 30.9 7.2 80 246-325 140-295 (622)
236 PF14893 PNMA: PNMA 54.5 9.4 0.0002 35.4 2.3 52 44-95 15-72 (331)
237 PF00403 HMA: Heavy-metal-asso 52.8 64 0.0014 21.2 6.3 54 254-309 1-58 (62)
238 PF07530 PRE_C2HC: Associated 51.9 34 0.00074 23.5 4.2 63 147-212 2-65 (68)
239 smart00596 PRE_C2HC PRE_C2HC d 49.7 31 0.00068 23.7 3.6 63 147-212 2-65 (69)
240 KOG1295 Nonsense-mediated deca 48.0 23 0.0005 33.1 3.7 65 47-111 7-78 (376)
241 PF02714 DUF221: Domain of unk 46.4 41 0.00089 31.2 5.3 57 88-155 1-57 (325)
242 KOG1295 Nonsense-mediated deca 45.2 28 0.00061 32.5 3.8 62 253-315 8-77 (376)
243 COG5624 TAF61 Transcription in 42.3 30 0.00065 32.5 3.5 10 266-275 460-469 (505)
244 COG5638 Uncharacterized conser 42.2 1.9E+02 0.004 27.5 8.5 39 44-82 143-186 (622)
245 PF15513 DUF4651: Domain of un 40.5 66 0.0014 21.6 4.0 19 146-164 8-26 (62)
246 COG0445 GidA Flavin-dependent 40.0 1.2E+02 0.0026 30.4 7.3 79 87-165 238-334 (621)
247 PRK14548 50S ribosomal protein 39.4 1.1E+02 0.0024 22.0 5.4 57 254-310 22-81 (84)
248 TIGR02542 B_forsyth_147 Bacter 38.7 75 0.0016 24.2 4.5 112 55-184 11-129 (145)
249 PF08544 GHMP_kinases_C: GHMP 38.4 1.3E+02 0.0029 21.0 5.9 44 62-106 37-80 (85)
250 KOG2295 C2H2 Zn-finger protein 38.3 6.1 0.00013 38.5 -1.6 66 48-113 232-301 (648)
251 PF00403 HMA: Heavy-metal-asso 37.6 1.2E+02 0.0025 19.8 6.1 54 49-104 1-58 (62)
252 PF08734 GYD: GYD domain; Int 36.4 1.6E+02 0.0036 21.4 6.1 45 266-311 22-68 (91)
253 PF08734 GYD: GYD domain; Int 35.6 1.3E+02 0.0029 21.9 5.5 46 61-106 22-68 (91)
254 TIGR03636 L23_arch archaeal ri 35.3 1.5E+02 0.0033 20.9 5.4 56 254-309 15-73 (77)
255 KOG3982 Runt and related trans 34.2 54 0.0012 30.4 3.8 10 62-71 99-108 (475)
256 PF02714 DUF221: Domain of unk 33.9 80 0.0017 29.2 5.2 31 177-209 1-31 (325)
257 PF11823 DUF3343: Protein of u 33.7 53 0.0011 22.8 3.0 29 291-319 2-30 (73)
258 KOG4213 RNA-binding protein La 33.5 53 0.0011 27.3 3.2 71 31-105 91-170 (205)
259 KOG1151 Tousled-like protein k 33.1 18 0.00039 34.8 0.6 9 137-145 393-401 (775)
260 PF03249 TSA: Type specific an 31.2 23 0.0005 32.8 1.0 9 62-70 342-350 (503)
261 KOG3982 Runt and related trans 30.5 31 0.00067 31.9 1.6 23 160-184 182-206 (475)
262 PF14893 PNMA: PNMA 30.4 39 0.00084 31.5 2.3 53 130-184 16-72 (331)
263 cd04889 ACT_PDH-BS-like C-term 29.9 1.5E+02 0.0033 18.8 5.5 41 62-102 13-55 (56)
264 PF03439 Spt5-NGN: Early trans 29.7 1E+02 0.0022 22.0 4.0 35 280-314 33-68 (84)
265 COG5193 LHP1 La protein, small 28.7 28 0.00061 32.7 1.1 61 132-192 174-244 (438)
266 COG2608 CopZ Copper chaperone 27.5 1.5E+02 0.0033 20.3 4.4 55 253-309 4-62 (71)
267 PF08544 GHMP_kinases_C: GHMP 27.2 2.2E+02 0.0047 19.8 5.6 41 267-310 37-79 (85)
268 KOG3702 Nuclear polyadenylated 26.7 39 0.00084 34.0 1.7 71 134-205 513-583 (681)
269 COG4874 Uncharacterized protei 26.6 3.8E+02 0.0081 23.7 7.3 110 45-165 156-296 (318)
270 PF13046 DUF3906: Protein of u 26.6 86 0.0019 21.2 2.8 32 59-90 30-63 (64)
271 PRK11901 hypothetical protein; 26.5 2.6E+02 0.0056 25.9 6.7 63 130-197 243-307 (327)
272 KOG2295 C2H2 Zn-finger protein 26.4 9.4 0.0002 37.2 -2.4 68 133-200 232-299 (648)
273 KOG4213 RNA-binding protein La 25.7 1E+02 0.0022 25.7 3.6 57 132-193 111-169 (205)
274 PF03439 Spt5-NGN: Early trans 25.2 1.4E+02 0.003 21.4 4.0 34 73-107 33-66 (84)
275 cd00187 TOP4c DNA Topoisomeras 25.2 4.4E+02 0.0095 25.9 8.5 94 47-155 225-326 (445)
276 PRK10629 EnvZ/OmpR regulon mod 24.9 3.4E+02 0.0075 21.3 8.2 68 47-118 35-106 (127)
277 KOG3424 40S ribosomal protein 24.8 2E+02 0.0043 22.1 4.7 46 142-188 33-83 (132)
278 cd04908 ACT_Bt0572_1 N-termina 24.3 2.2E+02 0.0048 18.8 8.5 48 265-314 14-63 (66)
279 PTZ00191 60S ribosomal protein 23.3 2.1E+02 0.0045 23.1 4.9 53 50-102 84-139 (145)
280 PF11061 DUF2862: Protein of u 23.1 2.2E+02 0.0047 19.3 4.2 31 267-299 18-51 (64)
281 COG5470 Uncharacterized conser 22.8 2.1E+02 0.0046 21.1 4.4 45 148-192 24-71 (96)
282 PRK11901 hypothetical protein; 22.1 1.6E+02 0.0034 27.3 4.5 51 58-109 253-308 (327)
283 PRK10927 essential cell divisi 22.0 2.5E+02 0.0054 25.9 5.7 61 49-113 249-312 (319)
284 KOG4008 rRNA processing protei 21.6 86 0.0019 27.3 2.6 33 252-286 40-72 (261)
285 PHA01632 hypothetical protein 21.4 83 0.0018 20.4 1.9 21 50-70 19-39 (64)
286 PF11411 DNA_ligase_IV: DNA li 21.2 76 0.0016 18.7 1.5 16 57-72 19-34 (36)
287 cd04883 ACT_AcuB C-terminal AC 21.0 2.7E+02 0.0058 18.6 6.1 44 60-103 14-62 (72)
288 KOG4008 rRNA processing protei 20.8 96 0.0021 27.0 2.7 35 43-77 36-70 (261)
289 PF09902 DUF2129: Uncharacteri 20.7 2.6E+02 0.0057 19.4 4.4 40 66-110 15-54 (71)
290 PTZ00191 60S ribosomal protein 20.6 3E+02 0.0064 22.2 5.3 56 254-309 83-141 (145)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.7e-47 Score=360.12 Aligned_cols=279 Identities=27% Similarity=0.461 Sum_probs=225.3
Q ss_pred CCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc
Q 015149 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~ 121 (412)
+.++|||+|||.++++++|+++|++||+|.+|++++++ ++|||||+|.+.++|.+||+.|++..+.|++|+|+|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46789999999999999999999999999999999874 46899999999999999999999999999999999987
Q ss_pred cCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 015149 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (412)
Q Consensus 122 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g 201 (412)
+... .....+|||+|||.++++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|..|++.|+|..+.|
T Consensus 82 ~~~~---~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g 158 (352)
T TIGR01661 82 PSSD---SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG 158 (352)
T ss_pred cccc---ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 6542 3345689999999999999999999999999999999998889999999999999999999999999999877
Q ss_pred --eEEEEEEccCCCCCCCccccC---------Ccc-ccc---------cccc---------CC-----------------
Q 015149 202 --RQIRCNWAAKGATSGDEKQSS---------DSK-SVV---------ELTN---------GI----------------- 234 (412)
Q Consensus 202 --~~l~v~~~~~~~~~~~~~~~~---------~~~-~~~---------~~~~---------~~----------------- 234 (412)
.+|.|.++............. ... ... .... +.
T Consensus 159 ~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR01661 159 CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQ 238 (352)
T ss_pred CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccc
Confidence 678888876543211000000 000 000 0000 00
Q ss_pred ---CCCCC-----C-----CCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEE
Q 015149 235 ---SDGQE-----K-----SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFV 295 (412)
Q Consensus 235 ---~~~~~-----~-----~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV 295 (412)
..... . .....+.....+.+|||+|||+++++++|+++|++| |.|++|++++| ||||||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~f--G~v~~v~i~~d~~t~~skG~aFV 316 (352)
T TIGR01661 239 HAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPF--GAVQNVKIIRDLTTNQCKGYGFV 316 (352)
T ss_pred cccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEeEcCCCCCccceEEE
Confidence 00000 0 000011112334579999999999999999999999 99999999876 799999
Q ss_pred EeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 296 RYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 296 ~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
+|.+.++|.+|+..|||..|+||.|+|.|..++.
T Consensus 317 ~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 317 SMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 9999999999999999999999999999987664
No 2
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.8e-46 Score=308.49 Aligned_cols=289 Identities=29% Similarity=0.429 Sum_probs=234.5
Q ss_pred CCCCCCCCCCCCCCE-EEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC----CCEEEEEecCHHHHHHHHHHhCCCc
Q 015149 35 SGNLPPRFDASTCRS-VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRH 109 (412)
Q Consensus 35 s~~~~~~~~~~~~~t-l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~----~g~afV~f~~~~~A~~Al~~l~~~~ 109 (412)
.....+..+..+++| |.|.-||..+|+|||+.+|...|+|++|++++++. -||+||.|.+++||.+|+..|||..
T Consensus 28 ~~~~~~~~~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLr 107 (360)
T KOG0145|consen 28 RNNCSSGNDTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLR 107 (360)
T ss_pred CCcCCCCCCcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhccee
Confidence 334444444455544 88889999999999999999999999999999974 5699999999999999999999999
Q ss_pred cCCceeEEEecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHH
Q 015149 110 IFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQS 189 (412)
Q Consensus 110 ~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ 189 (412)
+..++|+|.|+.++.. .....+|||++||+.++..||+.+|++||.|...+|+.|..+|.+||.+||.|...++|++
T Consensus 108 LQ~KTIKVSyARPSs~---~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~ 184 (360)
T KOG0145|consen 108 LQNKTIKVSYARPSSD---SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEE 184 (360)
T ss_pred eccceEEEEeccCChh---hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHH
Confidence 9999999999987764 4445579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeCC--eEEEEEEccCCCCCCCcccc---------CCcccccccc--------------------cCCCCCC
Q 015149 190 AINDLNGKWLGN--RQIRCNWAAKGATSGDEKQS---------SDSKSVVELT--------------------NGISDGQ 238 (412)
Q Consensus 190 ai~~l~~~~~~g--~~l~v~~~~~~~~~~~~~~~---------~~~~~~~~~~--------------------~~~~~~~ 238 (412)
||..|||..-.| .+|.|+++..+......... ....+..... .......
T Consensus 185 AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~ 264 (360)
T KOG0145|consen 185 AIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMS 264 (360)
T ss_pred HHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccc
Confidence 999999998766 56999998765322211000 0000000000 0000000
Q ss_pred CCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCC
Q 015149 239 EKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNA 312 (412)
Q Consensus 239 ~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g 312 (412)
.......+......++|||.||.++.+|.-|+++|.+| |.|..|++++| |||+||++.+.++|..|+..|||
T Consensus 265 ~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpF--GAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNG 342 (360)
T KOG0145|consen 265 GLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPF--GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 342 (360)
T ss_pred eeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcc--cceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcC
Confidence 01112233344457999999999999999999999999 99999999998 89999999999999999999999
Q ss_pred CeeCCeeeEEEecCCC
Q 015149 313 RILCGKPIKCSWGSKP 328 (412)
Q Consensus 313 ~~l~g~~l~V~~a~~~ 328 (412)
+.+++|.|.|+|...+
T Consensus 343 y~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 343 YRLGDRVLQVSFKTNK 358 (360)
T ss_pred ccccceEEEEEEecCC
Confidence 9999999999997654
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-45 Score=303.22 Aligned_cols=238 Identities=40% Similarity=0.733 Sum_probs=205.5
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeccc
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~ 122 (412)
+.++.|||||+||..++||+.|..+|+.+|+|.+++++.+ +++|.|+..
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------e~~v~wa~~ 50 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------ELKVNWATA 50 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------hhccccccC
Confidence 4577899999999999999999999999999999999876 556666654
Q ss_pred CCC--CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 015149 123 SSQ--REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (412)
Q Consensus 123 ~~~--~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~ 200 (412)
... ......+.+|||+.|...++.++|++.|.+||+|.+.++++|..|+++|||+||.|.+.++|+.||..++|..|+
T Consensus 51 p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG 130 (321)
T KOG0148|consen 51 PGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG 130 (321)
T ss_pred cccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeec
Confidence 432 223344778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCccc
Q 015149 201 NRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 280 (412)
Q Consensus 201 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~ 280 (412)
+|.|+-.|+.++........ .. -.+.-....+..++|||+|++..+|+++|++.|++| |.
T Consensus 131 ~R~IRTNWATRKp~e~n~~~----lt--------------fdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f--G~ 190 (321)
T KOG0148|consen 131 RRTIRTNWATRKPSEMNGKP----LT--------------FDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF--GP 190 (321)
T ss_pred cceeeccccccCccccCCCC----cc--------------HHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC--Cc
Confidence 99999999988862221111 00 011122234455899999999999999999999999 99
Q ss_pred EEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCCC
Q 015149 281 IEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPP 331 (412)
Q Consensus 281 v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~~ 331 (412)
|.+||+.+++||+||.|.+.|+|.+||..+||.+++|..++|+|.|.....
T Consensus 191 I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 191 IQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred ceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 999999999999999999999999999999999999999999999977654
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.6e-43 Score=311.91 Aligned_cols=244 Identities=24% Similarity=0.404 Sum_probs=215.4
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccC-CceeEEEe
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIF-GQPIKVNW 119 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~-g~~l~v~~ 119 (412)
..-+.|||++||.++.|+||..+|++.|+|-+++++.++ ++|||||.|++.++|++|++.||+..|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 345779999999999999999999999999999999984 6899999999999999999999999886 89999986
Q ss_pred cccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCC-eeeEEEeecC-CCCCcccEEEEEecCHHHHHHHHHHhC-C
Q 015149 120 AYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPT-CSDARVMWDQ-KTGRSRGFGFVSFRNQEDAQSAINDLN-G 196 (412)
Q Consensus 120 ~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-v~~~~~~~d~-~~~~~~g~afV~f~~~~~A~~ai~~l~-~ 196 (412)
+- .+++|||+|||+++++++|++.|++.++ |.+|.+..++ ...++||||||+|.+...|..|..+|- +
T Consensus 161 Sv---------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g 231 (506)
T KOG0117|consen 161 SV---------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG 231 (506)
T ss_pred ee---------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC
Confidence 54 4468999999999999999999999965 6667666554 345899999999999999999998773 3
Q ss_pred -ceeCCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhh
Q 015149 197 -KWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 275 (412)
Q Consensus 197 -~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~ 275 (412)
..++|..+.|+|+.+...... +.....+.|||+||+.++|+|.|+++|+.
T Consensus 232 ~~klwgn~~tVdWAep~~e~de-----------------------------d~ms~VKvLYVRNL~~~tTeE~lk~~F~~ 282 (506)
T KOG0117|consen 232 KIKLWGNAITVDWAEPEEEPDE-----------------------------DTMSKVKVLYVRNLMESTTEETLKKLFNE 282 (506)
T ss_pred ceeecCCcceeeccCcccCCCh-----------------------------hhhhheeeeeeeccchhhhHHHHHHHHHh
Confidence 458999999999987643322 23334488999999999999999999999
Q ss_pred cCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCC
Q 015149 276 LCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 330 (412)
Q Consensus 276 ~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~ 330 (412)
| |.|++|+.++| ||||.|.+.++|.+|++.+||++|+|..|.|.+||+...
T Consensus 283 ~--G~veRVkk~rD--YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 283 F--GKVERVKKPRD--YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred c--cceEEeecccc--eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 9 99999999988 999999999999999999999999999999999998653
No 5
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.2e-41 Score=329.23 Aligned_cols=275 Identities=20% Similarity=0.226 Sum_probs=215.0
Q ss_pred CCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHh--CCCccCCceeEEEecccC
Q 015149 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL--NGRHIFGQPIKVNWAYAS 123 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l--~~~~~~g~~l~v~~~~~~ 123 (412)
++++|||+|||+++++++|+++|++||+|.+|.+++ ++++|||+|.+.++|.+|+..+ ++..+.|+.|+|.|+..+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 478999999999999999999999999999999986 4579999999999999999864 778999999999999754
Q ss_pred CCCcC---------CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh
Q 015149 124 SQRED---------TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194 (412)
Q Consensus 124 ~~~~~---------~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l 194 (412)
..... ...-.+|+|.||++++++++|+++|+.||.|.++.++.+. .+++|||+|.+.++|.+|++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~L 154 (481)
T TIGR01649 79 EIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAAL 154 (481)
T ss_pred ccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHh
Confidence 32111 1122479999999999999999999999999999988653 2478999999999999999999
Q ss_pred CCceeCC--eEEEEEEccCCCCCC------CccccCCcc---cc--------cccc------------cCCCCC------
Q 015149 195 NGKWLGN--RQIRCNWAAKGATSG------DEKQSSDSK---SV--------VELT------------NGISDG------ 237 (412)
Q Consensus 195 ~~~~~~g--~~l~v~~~~~~~~~~------~~~~~~~~~---~~--------~~~~------------~~~~~~------ 237 (412)
||..|.| +.|+|+|++...... ......... .. .... .+....
T Consensus 155 ng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (481)
T TIGR01649 155 NGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAP 234 (481)
T ss_pred cCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCc
Confidence 9999964 589999987643211 000000000 00 0000 000000
Q ss_pred --------C------C------------CCCCCCCCCCCCcceEEEecCCC-CCCHHHHHHHHhhcCcccEEEEEeecc-
Q 015149 238 --------Q------E------------KSNEDAPENNPQYTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRD- 289 (412)
Q Consensus 238 --------~------~------------~~~~~~~~~~~~~~~l~V~nL~~-~~t~~~L~~~F~~~~~G~v~~v~i~~~- 289 (412)
. . ..........++.++|||+||+. .+|+++|+++|+.| |.|.+|+++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~y--G~V~~vki~~~~ 312 (481)
T TIGR01649 235 LAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVY--GNVERVKFMKNK 312 (481)
T ss_pred ccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCC
Confidence 0 0 00000011234678999999998 69999999999999 99999999987
Q ss_pred ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCC
Q 015149 290 KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328 (412)
Q Consensus 290 kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~ 328 (412)
+|+|||+|.+.++|.+|+..|||..|.|+.|+|.+++..
T Consensus 313 ~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 313 KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 699999999999999999999999999999999998764
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5.5e-42 Score=342.14 Aligned_cols=265 Identities=32% Similarity=0.496 Sum_probs=225.1
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC---CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~---~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~ 121 (412)
+...+|||+|||.++++++|+++|++||.|.+|++..+. ++|||||+|.+.++|.+|++.+++..+.|+.|.|....
T Consensus 86 ~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 86 SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 445679999999999999999999999999999998864 57899999999999999999999999999999998776
Q ss_pred cCCCCc--CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee
Q 015149 122 ASSQRE--DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL 199 (412)
Q Consensus 122 ~~~~~~--~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~ 199 (412)
.+..+. .....++|||+|||.++++++|+++|+.||.|.++.+..+ .+|+++|||||+|.+.++|.+|++.+++..+
T Consensus 166 ~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i 244 (562)
T TIGR01628 166 KKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKI 244 (562)
T ss_pred cccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEe
Confidence 554442 3345578999999999999999999999999999999988 5789999999999999999999999999999
Q ss_pred C----CeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhh
Q 015149 200 G----NRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 275 (412)
Q Consensus 200 ~----g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~ 275 (412)
. |+.+.|.++..+............ .............+|||+||+..+++++|+++|+.
T Consensus 245 ~~~~~g~~l~v~~a~~k~er~~~~~~~~~----------------~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~ 308 (562)
T TIGR01628 245 GLAKEGKKLYVGRAQKRAEREAELRRKFE----------------ELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSE 308 (562)
T ss_pred cccccceeeEeecccChhhhHHHHHhhHH----------------hhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHh
Confidence 9 999999887655332111000000 00000011233478999999999999999999999
Q ss_pred cCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCC
Q 015149 276 LCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328 (412)
Q Consensus 276 ~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~ 328 (412)
| |.|++|+++.| +|||||+|.+.++|.+|+..|||..|+|++|.|.|+..+
T Consensus 309 ~--G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 309 C--GEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred c--CCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 9 99999999876 699999999999999999999999999999999999864
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.4e-41 Score=327.35 Aligned_cols=246 Identities=23% Similarity=0.366 Sum_probs=208.5
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeec---CCCCEEEEEecCHHHHHHHHHHhCCCccC-CceeEEEec
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIF-GQPIKVNWA 120 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~---~~~g~afV~f~~~~~A~~Al~~l~~~~~~-g~~l~v~~~ 120 (412)
...++|||+|||++++|++|+++|++||+|.+|+|+++ +++|||||+|.+.++|.+||+.||+..+. |+.|.|.++
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 34588999999999999999999999999999999886 35889999999999999999999998886 787777655
Q ss_pred ccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCC-eeeEEEe-ecCCCCCcccEEEEEecCHHHHHHHHHHhCC--
Q 015149 121 YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPT-CSDARVM-WDQKTGRSRGFGFVSFRNQEDAQSAINDLNG-- 196 (412)
Q Consensus 121 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-v~~~~~~-~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~-- 196 (412)
. ..++|||+|||+++++++|.+.|++++. +.++.+. .+...++++|||||+|.+.++|..|++.|+.
T Consensus 136 ~---------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 136 V---------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred c---------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 3 3568999999999999999999999864 4444333 2234567899999999999999999998854
Q ss_pred ceeCCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhc
Q 015149 197 KWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHAL 276 (412)
Q Consensus 197 ~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~ 276 (412)
..+.|+.|.|+|+.+...... ......++|||+||+.++++++|+++|+.|
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d~-----------------------------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f 257 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVDE-----------------------------DVMAKVKILYVRNLMTTTTEEIIEKSFSEF 257 (578)
T ss_pred eEecCceEEEEeecccccccc-----------------------------cccccccEEEEeCCCCCCCHHHHHHHHHhc
Confidence 458999999999876532111 111223789999999999999999999999
Q ss_pred CcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCC
Q 015149 277 CVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 330 (412)
Q Consensus 277 ~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~ 330 (412)
..|.|++|++++ +||||+|.+.++|.+|++.|||.+|.|+.|+|+|++++..
T Consensus 258 ~~G~I~rV~~~r--gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 258 KPGKVERVKKIR--DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred CCCceEEEEeec--CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 668999998775 5999999999999999999999999999999999987543
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=9.4e-42 Score=340.44 Aligned_cols=248 Identities=31% Similarity=0.562 Sum_probs=218.1
Q ss_pred EEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCC
Q 015149 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (412)
Q Consensus 49 tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~ 124 (412)
+|||+|||.++||++|+++|++||+|.+|++++++ +.|||||+|.+.++|.+|++.+++..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999864 46899999999999999999999999999999999986433
Q ss_pred CCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 015149 125 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (412)
Q Consensus 125 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 204 (412)
.. ......+|||+|||+++++++|+++|+.||.|.+|++..+ .+|+++|||||+|.+.++|.+|++.++|..+.|+.|
T Consensus 82 ~~-~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 82 SL-RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEV 159 (562)
T ss_pred cc-cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceE
Confidence 22 2234567999999999999999999999999999999988 578899999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEE
Q 015149 205 RCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV 284 (412)
Q Consensus 205 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v 284 (412)
.|.....+.... .......++|||+||+.++|+++|+++|+.| |.|.++
T Consensus 160 ~v~~~~~~~~~~-----------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~f--G~i~~~ 208 (562)
T TIGR01628 160 YVGRFIKKHERE-----------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKF--GEITSA 208 (562)
T ss_pred EEeccccccccc-----------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhc--CCEEEE
Confidence 997654332111 0011233689999999999999999999999 999999
Q ss_pred Eeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeC----CeeeEEEecCCCC
Q 015149 285 RVQRD-----KGFGFVRYSTHPEAALAIQMGNARILC----GKPIKCSWGSKPT 329 (412)
Q Consensus 285 ~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~----g~~l~V~~a~~~~ 329 (412)
.+.++ +|||||+|.+.++|.+|++.|||..+. |+.|.|.++.++.
T Consensus 209 ~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 209 AVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred EEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh
Confidence 99876 789999999999999999999999999 9999998876543
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.3e-40 Score=319.07 Aligned_cols=167 Identities=22% Similarity=0.413 Sum_probs=151.3
Q ss_pred CCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc
Q 015149 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~ 121 (412)
..++|||+|||+++++++|+++|++||+|.+|++++++ ++|||||+|.+.++|.+|++.|||..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 35789999999999999999999999999999998764 68999999999999999999999999999999998764
Q ss_pred cCCC--------CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 015149 122 ASSQ--------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193 (412)
Q Consensus 122 ~~~~--------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~ 193 (412)
.... .......++|||+||++++++++|+++|+.||.|.++++.+|+.++++||||||+|.+.++|.+|+..
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 3221 11223457899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeCCeEEEEEEccCC
Q 015149 194 LNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 194 l~~~~~~g~~l~v~~~~~~ 212 (412)
+|+..|+|+.|+|.++..+
T Consensus 266 mNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred hCCCeeCCeEEEEEecCCC
Confidence 9999999999999998754
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=7.3e-40 Score=318.63 Aligned_cols=275 Identities=19% Similarity=0.255 Sum_probs=215.4
Q ss_pred CCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCC--ceeEEEecccCC
Q 015149 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAYASS 124 (412)
Q Consensus 47 ~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g--~~l~v~~~~~~~ 124 (412)
..+|+|+||++.+|+++|+++|+.||.|.+|.+++++..++|||+|.+.++|.+|++.|||..|.| +.|+|.|++...
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 457999999999999999999999999999999887777899999999999999999999999975 478888876311
Q ss_pred C--------------------C-----------c----------------------------------------------
Q 015149 125 Q--------------------R-----------E---------------------------------------------- 127 (412)
Q Consensus 125 ~--------------------~-----------~---------------------------------------------- 127 (412)
- + .
T Consensus 176 l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (481)
T TIGR01649 176 LNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAY 255 (481)
T ss_pred ceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccc
Confidence 0 0 0
Q ss_pred ---------------CCCCCceEEECCCCc-cccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 015149 128 ---------------DTSGHFNVFVGDLSP-EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191 (412)
Q Consensus 128 ---------------~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai 191 (412)
....+.+|||+||++ .+++++|+++|+.||.|..++++.++ +|+|||+|.+.++|..|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai 330 (481)
T TIGR01649 256 EAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLAL 330 (481)
T ss_pred cccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHH
Confidence 011346899999998 69999999999999999999999763 699999999999999999
Q ss_pred HHhCCceeCCeEEEEEEccCCCCCCCccccCCccc--ccccccCCCCC-CCCCCCCCCCCCCCcceEEEecCCCCCCHHH
Q 015149 192 NDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKS--VVELTNGISDG-QEKSNEDAPENNPQYTTVYVGNLSSEVTSVD 268 (412)
Q Consensus 192 ~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~ 268 (412)
..|+|..|.|+.|+|.++................. ........... ............++..+|||+|||..+++++
T Consensus 331 ~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~ 410 (481)
T TIGR01649 331 THLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEED 410 (481)
T ss_pred HHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHH
Confidence 99999999999999999865532221110000000 00000000000 0000000011235678999999999999999
Q ss_pred HHHHHhhcCccc--EEEEEeecc----ccEEEEEeCCHHHHHHHHHHcCCCeeCCee------eEEEecCCC
Q 015149 269 LHRHFHALCVGT--IEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKP------IKCSWGSKP 328 (412)
Q Consensus 269 L~~~F~~~~~G~--v~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~------l~V~~a~~~ 328 (412)
|+++|+.| |. |+.+++..+ +|+|||+|.+.++|.+|+..|||+.|.|+. |+|+|++++
T Consensus 411 L~~lF~~~--G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 411 LKELFAEN--GVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHhc--CCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 99999999 76 888988654 599999999999999999999999999985 999999764
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=4.1e-39 Score=314.51 Aligned_cols=281 Identities=26% Similarity=0.406 Sum_probs=220.4
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEe
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~ 119 (412)
..+.++|||+|||.++++++|+++|++||+|.+|.+++++ ++|||||+|.+.++|.+|| .|+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 4567899999999999999999999999999999999864 4789999999999999999 6999999999999998
Q ss_pred cccCCCC---------cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHH
Q 015149 120 AYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSA 190 (412)
Q Consensus 120 ~~~~~~~---------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~a 190 (412)
+...... ......++|||+|||..+++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 7543221 1112357899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeCCeEEEEEEccCCCCCCCccccC----------C----ccc--------------ccccccCC--------
Q 015149 191 INDLNGKWLGNRQIRCNWAAKGATSGDEKQSS----------D----SKS--------------VVELTNGI-------- 234 (412)
Q Consensus 191 i~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~----------~----~~~--------------~~~~~~~~-------- 234 (412)
+..|+|..|.|+.|.|.|+............. . ... ........
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQK 324 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcc
Confidence 99999999999999999976332111000000 0 000 00000000
Q ss_pred --CCC--C--C------------CCCCCCC--CCCCCcceEEEecCCCCCC----------HHHHHHHHhhcCcccEEEE
Q 015149 235 --SDG--Q--E------------KSNEDAP--ENNPQYTTVYVGNLSSEVT----------SVDLHRHFHALCVGTIEDV 284 (412)
Q Consensus 235 --~~~--~--~------------~~~~~~~--~~~~~~~~l~V~nL~~~~t----------~~~L~~~F~~~~~G~v~~v 284 (412)
... . . ......+ ....+.++|+|.||....+ .+||++.|++| |.|+.|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~--G~v~~v 402 (457)
T TIGR01622 325 LQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKY--GGVVHI 402 (457)
T ss_pred ccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhc--CCeeEE
Confidence 000 0 0 0000001 1235678999999965443 36899999999 999999
Q ss_pred Eeecc--ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCC
Q 015149 285 RVQRD--KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327 (412)
Q Consensus 285 ~i~~~--kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~ 327 (412)
.+... .|++||+|.+.++|.+|++.|||..|+|+.|.|.|...
T Consensus 403 ~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 403 YVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred EEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 99743 79999999999999999999999999999999998643
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=5.3e-39 Score=318.07 Aligned_cols=273 Identities=18% Similarity=0.298 Sum_probs=213.3
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhcc------------CCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCcc
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSST------------GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHI 110 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~------------G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~ 110 (412)
.....++|||+|||+++|+++|+++|..+ +.|..+.+ .+.+|||||+|.+.++|..|| .|+|..|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~--~~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI--NKEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE--CCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 45677899999999999999999999975 24444444 346789999999999999999 6999999
Q ss_pred CCceeEEEecccCCC--------------------------CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEE
Q 015149 111 FGQPIKVNWAYASSQ--------------------------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164 (412)
Q Consensus 111 ~g~~l~v~~~~~~~~--------------------------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~ 164 (412)
.|+.|+|........ .......++|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 999999975442210 001233578999999999999999999999999999999
Q ss_pred eecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCC
Q 015149 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNED 244 (412)
Q Consensus 165 ~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (412)
+.+..+|.++|||||+|.+.++|..|+..|+|..|+|+.|.|.++......................... ....
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 401 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKAL------SQSI 401 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccc------hhhh
Confidence 9999999999999999999999999999999999999999999986543322111110000000000000 0000
Q ss_pred CCCCCCCcceEEEecCCCC--C--------CHHHHHHHHhhcCcccEEEEEeecc---------ccEEEEEeCCHHHHHH
Q 015149 245 APENNPQYTTVYVGNLSSE--V--------TSVDLHRHFHALCVGTIEDVRVQRD---------KGFGFVRYSTHPEAAL 305 (412)
Q Consensus 245 ~~~~~~~~~~l~V~nL~~~--~--------t~~~L~~~F~~~~~G~v~~v~i~~~---------kg~afV~f~~~~~A~~ 305 (412)
......+..+|+|.|+... + ..++|+++|++| |.|+.|.|+++ +|++||+|.+.++|.+
T Consensus 402 ~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~--G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~ 479 (509)
T TIGR01642 402 LQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKY--GPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEK 479 (509)
T ss_pred ccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhc--CCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHH
Confidence 1122345689999999642 1 236899999999 99999999864 4899999999999999
Q ss_pred HHHHcCCCeeCCeeeEEEecC
Q 015149 306 AIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 306 A~~~l~g~~l~g~~l~V~~a~ 326 (412)
|+..|||..|+|+.|.|.|..
T Consensus 480 A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 480 AMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred HHHHcCCCEECCeEEEEEEeC
Confidence 999999999999999999864
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.3e-37 Score=279.95 Aligned_cols=277 Identities=25% Similarity=0.424 Sum_probs=219.5
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccC
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~ 123 (412)
.||||++||++++.++|.++|+.+|+|..|.++.++ ++||+||.|.-.+|+.+|+...++..|.|+.|+|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 789999999999999999999999999999998875 4799999999999999999999999999999999988754
Q ss_pred CCCc---------------------C--CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEE
Q 015149 124 SQRE---------------------D--TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVS 180 (412)
Q Consensus 124 ~~~~---------------------~--~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~ 180 (412)
.... . .....+|.|+|||+.+.+.||..+|+.||.|.++.|...+ .|+..|||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEE
Confidence 3221 0 1125679999999999999999999999999999999654 45555999999
Q ss_pred ecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCcc-------------------ccCCc------------ccccc
Q 015149 181 FRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEK-------------------QSSDS------------KSVVE 229 (412)
Q Consensus 181 f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~-------------------~~~~~------------~~~~~ 229 (412)
|.+..+|..|++.+|+..|+||+|-|.|+-.+....... ..... .....
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe 244 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEE 244 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccccc
Confidence 999999999999999999999999999997765432210 00000 00000
Q ss_pred cccCC--------C--------CCCC----------CCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEE
Q 015149 230 LTNGI--------S--------DGQE----------KSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED 283 (412)
Q Consensus 230 ~~~~~--------~--------~~~~----------~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~ 283 (412)
..+. . +... .......+...-..+|||+|||+++|+++|.++|++| |.|.+
T Consensus 245 -~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskF--G~v~y 321 (678)
T KOG0127|consen 245 -TDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKF--GEVKY 321 (678)
T ss_pred -ccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhh--cccee
Confidence 0000 0 0000 0000011222334799999999999999999999999 99999
Q ss_pred EEeecc------ccEEEEEeCCHHHHHHHHHHc-----CC-CeeCCeeeEEEecCCC
Q 015149 284 VRVQRD------KGFGFVRYSTHPEAALAIQMG-----NA-RILCGKPIKCSWGSKP 328 (412)
Q Consensus 284 v~i~~~------kg~afV~f~~~~~A~~A~~~l-----~g-~~l~g~~l~V~~a~~~ 328 (412)
+.++.+ +|.|||.|.+..+|..||+.. .| ..|.||.|+|..+-.+
T Consensus 322 a~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 322 AIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred EEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 999866 799999999999999999976 34 6789999999887543
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.8e-37 Score=274.98 Aligned_cols=282 Identities=27% Similarity=0.417 Sum_probs=224.8
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC----CCEEEEEecCHHHHHHHHHHhCCCc-cCC--ceeEE
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRH-IFG--QPIKV 117 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~----~g~afV~f~~~~~A~~Al~~l~~~~-~~g--~~l~v 117 (412)
.+.-++||+.||..++|.||+++|++||.|.+|.+++|+. +|||||.|.+.++|.+|+..|++.. +.| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 5556799999999999999999999999999999999974 7899999999999999999998754 555 68899
Q ss_pred EecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc
Q 015149 118 NWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197 (412)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~ 197 (412)
+++....++. ..+++|||+.|++.++|.||+++|++||.|++|.|++| ..+.+||||||.|.+.|.|..||+.||+.
T Consensus 112 k~Ad~E~er~--~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 112 KYADGERERI--VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred cccchhhhcc--ccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccc
Confidence 9887655443 66789999999999999999999999999999999999 56899999999999999999999999997
Q ss_pred e-eCC--eEEEEEEccCCCCCCCccc-----------------------------------------c------------
Q 015149 198 W-LGN--RQIRCNWAAKGATSGDEKQ-----------------------------------------S------------ 221 (412)
Q Consensus 198 ~-~~g--~~l~v~~~~~~~~~~~~~~-----------------------------------------~------------ 221 (412)
. +.| .+|.|+|++.++....... .
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~ 268 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGP 268 (510)
T ss_pred eeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCC
Confidence 5 555 6799999987753321000 0
Q ss_pred ----------------------CCccccccc----------c---------cCCCCC-----------------------
Q 015149 222 ----------------------SDSKSVVEL----------T---------NGISDG----------------------- 237 (412)
Q Consensus 222 ----------------------~~~~~~~~~----------~---------~~~~~~----------------------- 237 (412)
......... . +.....
T Consensus 269 l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~ 348 (510)
T KOG0144|consen 269 LNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLA 348 (510)
T ss_pred cchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccc
Confidence 000000000 0 000000
Q ss_pred -------------------------------------------------------------CCCCCCCCCCCCCCcceEE
Q 015149 238 -------------------------------------------------------------QEKSNEDAPENNPQYTTVY 256 (412)
Q Consensus 238 -------------------------------------------------------------~~~~~~~~~~~~~~~~~l~ 256 (412)
...........++.+..||
T Consensus 349 ~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlf 428 (510)
T KOG0144|consen 349 GGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLF 428 (510)
T ss_pred cccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCcccee
Confidence 0000001111345567899
Q ss_pred EecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCC
Q 015149 257 VGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 330 (412)
Q Consensus 257 V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~ 330 (412)
|.+||.+.-+.||...|..| |.|.+.++..| |.|+||.|++..+|..||..|||+-+++++|+|...+++..
T Consensus 429 iyhlPqefgdq~l~~~f~pf--G~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 429 IYHLPQEFGDQDLIATFQPF--GGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred eeeCchhhhhHHHHHHhccc--cceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 99999999999999999999 99999888766 67999999999999999999999999999999998876654
Q ss_pred C
Q 015149 331 P 331 (412)
Q Consensus 331 ~ 331 (412)
+
T Consensus 507 p 507 (510)
T KOG0144|consen 507 P 507 (510)
T ss_pred C
Confidence 3
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.5e-33 Score=272.09 Aligned_cols=174 Identities=26% Similarity=0.487 Sum_probs=149.8
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
..++|||+|||+++++++|+++|++||+|.++++++|+.+|+++|||||+|.+.++|.+|++.+||..++|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred CCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-
Q 015149 211 KGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD- 289 (412)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~- 289 (412)
......... ..........++|||+||+.++++++|+++|+.| |.|+++++.+|
T Consensus 186 ~~p~a~~~~-----------------------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~F--G~I~svrl~~D~ 240 (612)
T TIGR01645 186 NMPQAQPII-----------------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF--GEIVKCQLARAP 240 (612)
T ss_pred ccccccccc-----------------------ccccccccccceEEeecCCCCCCHHHHHHHHhhc--CCeeEEEEEecC
Confidence 221100000 0000111234789999999999999999999999 99999999875
Q ss_pred -----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 290 -----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 290 -----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
||||||+|.+.++|.+|++.|||..|+|+.|+|.++..+.
T Consensus 241 ~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 241 TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred CCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 7999999999999999999999999999999999988654
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-32 Score=253.80 Aligned_cols=238 Identities=32% Similarity=0.557 Sum_probs=211.5
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC-CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCCCC
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR 126 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~-~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~~~ 126 (412)
.+|||+ +++|+.+|.++|+++|+|++++++++- +-|||||.|.++++|.+||+++|...+.|+++++-|+......
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~ 78 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL 78 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce
Confidence 358999 899999999999999999999999876 3479999999999999999999999999999999998654432
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
|||.||+++++..+|.+.|+.||+|.+|++..|. .| ++|| ||+|++++.|.+||+.+||..+.|+.|.|
T Consensus 79 --------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 79 --------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred --------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 9999999999999999999999999999999985 34 9999 99999999999999999999999999999
Q ss_pred EEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEe
Q 015149 207 NWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV 286 (412)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i 286 (412)
.....+......... .......++|.|++.+++++.|.++|..+ |.|.++.+
T Consensus 148 g~~~~~~er~~~~~~--------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~--g~i~s~~v 199 (369)
T KOG0123|consen 148 GLFERKEEREAPLGE--------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAY--GSITSVAV 199 (369)
T ss_pred eeccchhhhcccccc--------------------------hhhhhhhhheeccccccchHHHHHhhccc--CcceEEEE
Confidence 887665433322111 11223679999999999999999999999 99999999
Q ss_pred ecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCC
Q 015149 287 QRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327 (412)
Q Consensus 287 ~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~ 327 (412)
+++ +||+||.|.+.++|..|++.|||..++|+.+.|.-+..
T Consensus 200 ~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 200 MRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred eecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 986 79999999999999999999999999999999987765
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.6e-32 Score=251.14 Aligned_cols=169 Identities=25% Similarity=0.441 Sum_probs=153.6
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
+....++|||+|||+++|+++|+++|+.||+|++|+|++++ ++|||||+|.+.++|.+|++.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 45577899999999999999999999999999999998874 46899999999999999999999999999999999
Q ss_pred ecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCce
Q 015149 119 WAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (412)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~ 198 (412)
|+++... .....+|||+|||+++++++|+++|++||+|..++++.|+.+++++|||||+|.+.++|++||+.|++..
T Consensus 183 ~a~p~~~---~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 259 (346)
T TIGR01659 183 YARPGGE---SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVI 259 (346)
T ss_pred ccccccc---ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCc
Confidence 9876432 2345689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCC--eEEEEEEccCCCC
Q 015149 199 LGN--RQIRCNWAAKGAT 214 (412)
Q Consensus 199 ~~g--~~l~v~~~~~~~~ 214 (412)
+.+ +.|.|.++.....
T Consensus 260 ~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 260 PEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred cCCCceeEEEEECCcccc
Confidence 866 7899999876543
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2e-32 Score=251.90 Aligned_cols=168 Identities=32% Similarity=0.503 Sum_probs=151.5
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
......++|||+|||+++++++|+++|+.||+|.+|+|+.|+.+++++|||||+|.++++|++|++.|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 45556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEe
Q 015149 207 NWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV 286 (412)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i 286 (412)
.++.+.... ....+|||+|||..+|+++|+++|++| |.|++|++
T Consensus 182 ~~a~p~~~~----------------------------------~~~~~lfV~nLp~~vtee~L~~~F~~f--G~V~~v~i 225 (346)
T TIGR01659 182 SYARPGGES----------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKY--GQIVQKNI 225 (346)
T ss_pred ecccccccc----------------------------------cccceeEEeCCCCcccHHHHHHHHHhc--CCEEEEEE
Confidence 997543110 012579999999999999999999999 99999999
Q ss_pred ecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCC--eeeEEEecCCCCC
Q 015149 287 QRD------KGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGSKPTP 330 (412)
Q Consensus 287 ~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g--~~l~V~~a~~~~~ 330 (412)
+++ ||+|||+|.+.++|.+|++.||+..|.| ++|+|.|++....
T Consensus 226 ~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 226 LRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred eecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 877 4899999999999999999999998866 7999999987544
No 19
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.7e-31 Score=230.86 Aligned_cols=165 Identities=22% Similarity=0.416 Sum_probs=147.6
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccC
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~ 123 (412)
|+|||+.|.+++.|+.|+..|..||+|++|.+.++. ++|||||+|+-+|.|..|++.+||..++||.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 559999999999999999999999999999998874 6899999999999999999999999999999999855432
Q ss_pred CCC--------cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 015149 124 SQR--------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (412)
Q Consensus 124 ~~~--------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~ 195 (412)
... ++...-++|||..+.++++++||+.+|+.||+|..|.+-+++..+.+|||+||+|.+...-..||..+|
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 211 122334689999999999999999999999999999999998888999999999999999999999999
Q ss_pred CceeCCeEEEEEEccCC
Q 015149 196 GKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 196 ~~~~~g~~l~v~~~~~~ 212 (412)
-..++|+.|+|..+...
T Consensus 274 lFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCVTP 290 (544)
T ss_pred hhhcccceEecccccCC
Confidence 99999999999876544
No 20
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=2.3e-31 Score=245.92 Aligned_cols=258 Identities=33% Similarity=0.520 Sum_probs=218.7
Q ss_pred EEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC--CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCCCC
Q 015149 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR 126 (412)
Q Consensus 49 tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~--~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~~~ 126 (412)
.|||.||+.+++..+|.++|+.||+|++|++..+. .+|| ||+|.+.++|.+|++.+||..+.|+.|.|.....+..+
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 39999999999999999999999999999999875 4789 99999999999999999999999999999888766554
Q ss_pred cCCCC-----CceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 015149 127 EDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (412)
Q Consensus 127 ~~~~~-----~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g 201 (412)
..... -..+++.+++.+.++.+|..+|..+|.|.++.++.+ ..+++++|+||+|.+.++|..|+..+++..+.+
T Consensus 157 ~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~-~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~ 235 (369)
T KOG0123|consen 157 EAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRD-SIGKSKGFGFVNFENPEDAKKAVETLNGKIFGD 235 (369)
T ss_pred cccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeec-CCCCCCCccceeecChhHHHHHHHhccCCcCCc
Confidence 33322 246999999999999999999999999999999988 456799999999999999999999999999999
Q ss_pred eEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccE
Q 015149 202 RQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 281 (412)
Q Consensus 202 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v 281 (412)
..+.|..+..+.......... ................|||.|++..++.+.|++.|+.| |.|
T Consensus 236 ~~~~V~~aqkk~e~~~~l~~~----------------~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~--GeI 297 (369)
T KOG0123|consen 236 KELYVGRAQKKSEREAELKRK----------------FEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSF--GEI 297 (369)
T ss_pred cceeecccccchhhHHHHhhh----------------hHhhhhhccccccccccccccCccccchhHHHHHHhcc--cce
Confidence 999998876632211100000 00001111122334789999999999999999999999 999
Q ss_pred EEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 282 EDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 282 ~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
.++++..+ +|++||+|.+.++|.+|+..+||..+.++.|.|.++.
T Consensus 298 ~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~q 347 (369)
T KOG0123|consen 298 TSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQ 347 (369)
T ss_pred eeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHh
Confidence 99999875 8999999999999999999999999999999998876
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=244.72 Aligned_cols=258 Identities=24% Similarity=0.339 Sum_probs=213.1
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeccc
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~ 122 (412)
..+..+.|+|+|||..+..++|...|..||+|..|.+. +....++|.|.++.+|..|.+.|....+...++.+.|+..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~ 458 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPE 458 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cccceeeeeecCccchHHHHHHhchhhhccCccccccChh
Confidence 34556789999999999999999999999999988443 5555799999999999999999999999988888888751
Q ss_pred CCCC-----------------------------------------------cCCCCCceEEECCCCccccHHHHHHHhhc
Q 015149 123 SSQR-----------------------------------------------EDTSGHFNVFVGDLSPEVTDATLFACFSV 155 (412)
Q Consensus 123 ~~~~-----------------------------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~ 155 (412)
.... .......+|||.||+++++.+++..+|.+
T Consensus 459 dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k 538 (725)
T KOG0110|consen 459 DVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSK 538 (725)
T ss_pred hhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHh
Confidence 1000 00011133999999999999999999999
Q ss_pred CCCeeeEEEeecCCC---CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCccccCCccccccccc
Q 015149 156 FPTCSDARVMWDQKT---GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTN 232 (412)
Q Consensus 156 ~G~v~~~~~~~d~~~---~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (412)
.|.|.++.|...+.. -.+.|||||+|.+.++|..|++.|+|+.++|+.|.|+++..+.......
T Consensus 539 ~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK------------- 605 (725)
T KOG0110|consen 539 QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGK------------- 605 (725)
T ss_pred cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccccc-------------
Confidence 999999988755322 1356999999999999999999999999999999999997222111110
Q ss_pred CCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHH
Q 015149 233 GISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALA 306 (412)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A 306 (412)
.......+..|+|+|||+..+..+++.+|..| |.|.+|+|+.. +|||||+|-++.+|.+|
T Consensus 606 ------------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF--GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA 671 (725)
T KOG0110|consen 606 ------------KKSKKKKGTKILVRNIPFEATKREVRKLFTAF--GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNA 671 (725)
T ss_pred ------------ccccccccceeeeeccchHHHHHHHHHHHhcc--cceeeeccchhhcchhhccceeeeccCcHHHHHH
Confidence 00111224789999999999999999999999 99999999865 89999999999999999
Q ss_pred HHHcCCCeeCCeeeEEEecCCCC
Q 015149 307 IQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 307 ~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
+..|.+..|.||+|.+.|++...
T Consensus 672 ~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 672 FDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHhhcccceechhhheehhccch
Confidence 99999999999999999997653
No 22
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.8e-29 Score=236.30 Aligned_cols=163 Identities=31% Similarity=0.532 Sum_probs=147.5
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
+..+|||+|||+++++++|+++|+.||+|.+|++++|+.+|+++|||||+|.+.++|.+||+.|+|..+.|+.|.|+|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-
Q 015149 211 KGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD- 289 (412)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~- 289 (412)
+.... ....+|||+|||..+++++|+++|+.| |.|..+++..+
T Consensus 82 ~~~~~----------------------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~--G~i~~~~~~~~~ 125 (352)
T TIGR01661 82 PSSDS----------------------------------IKGANLYVSGLPKTMTQHELESIFSPF--GQIITSRILSDN 125 (352)
T ss_pred ccccc----------------------------------cccceEEECCccccCCHHHHHHHHhcc--CCEEEEEEEecC
Confidence 43211 012579999999999999999999999 99999998765
Q ss_pred -----ccEEEEEeCCHHHHHHHHHHcCCCeeCC--eeeEEEecCCCC
Q 015149 290 -----KGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGSKPT 329 (412)
Q Consensus 290 -----kg~afV~f~~~~~A~~A~~~l~g~~l~g--~~l~V~~a~~~~ 329 (412)
+|+|||+|.+.++|.+|++.|||..+.| ++|+|.|+..+.
T Consensus 126 ~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 126 VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 6899999999999999999999999877 678999987554
No 23
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.96 E-value=1.6e-29 Score=231.97 Aligned_cols=282 Identities=24% Similarity=0.406 Sum_probs=219.3
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEE
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v 117 (412)
...++.||||+-.|+-.++..||.+||+.+|+|.+|.++.++ ++|.|||+|.+.+....|| .|.|..+.|-+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 355777999999999999999999999999999999999885 4889999999999999999 89999999999999
Q ss_pred EecccCCCC-----------cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHH
Q 015149 118 NWAYASSQR-----------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQED 186 (412)
Q Consensus 118 ~~~~~~~~~-----------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~ 186 (412)
..+...... .-..+-..|||+||.+++++++|+.+|++||.|..|.+.+|.+||.++||+||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 976533221 011122339999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEEccCCCCCCCccccC---C--ccccccccc--------------C--------------
Q 015149 187 AQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS---D--SKSVVELTN--------------G-------------- 233 (412)
Q Consensus 187 A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~---~--~~~~~~~~~--------------~-------------- 233 (412)
|.+|+..|||.+|-|+.|+|................ + ......... +
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~ 412 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLL 412 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhc
Confidence 999999999999999999987654333222110000 0 000000000 0
Q ss_pred --CC------C----CCCCCCCCCCCCCCCcceEEEecCCCCC--C--------HHHHHHHHhhcCcccEEEEEeeccc-
Q 015149 234 --IS------D----GQEKSNEDAPENNPQYTTVYVGNLSSEV--T--------SVDLHRHFHALCVGTIEDVRVQRDK- 290 (412)
Q Consensus 234 --~~------~----~~~~~~~~~~~~~~~~~~l~V~nL~~~~--t--------~~~L~~~F~~~~~G~v~~v~i~~~k- 290 (412)
.. . ....+....+....++.|+.++|+-... | .||+.+-+++| |+|..|.+.++.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~--g~v~hi~vd~ns~ 490 (549)
T KOG0147|consen 413 AKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKH--GKVCHIFVDKNSA 490 (549)
T ss_pred cccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhc--CCeeEEEEccCCC
Confidence 00 0 0000111122333567788899884322 2 37888899999 999999999885
Q ss_pred cEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 291 GFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 291 g~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
|+.||.|.+.+.|..|+..|||.+|.||.|...|-.
T Consensus 491 g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 491 GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 999999999999999999999999999999999864
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.2e-29 Score=225.33 Aligned_cols=166 Identities=25% Similarity=0.438 Sum_probs=147.7
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCce-eCC--eEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW-LGN--RQIR 205 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~-~~g--~~l~ 205 (412)
..+.-++||+.||..++|.||+++|++||.|.+|.+++|+.++.++|||||.|.+.++|.+|+..|++.. |.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3556789999999999999999999999999999999999999999999999999999999999998865 544 6788
Q ss_pred EEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEE
Q 015149 206 CNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR 285 (412)
Q Consensus 206 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~ 285 (412)
|++++.+.+... ..++|||+-|+..+||.+++++|.+| |.|++|.
T Consensus 111 vk~Ad~E~er~~---------------------------------~e~KLFvg~lsK~~te~evr~iFs~f--G~Ied~~ 155 (510)
T KOG0144|consen 111 VKYADGERERIV---------------------------------EERKLFVGMLSKQCTENEVREIFSRF--GHIEDCY 155 (510)
T ss_pred ecccchhhhccc---------------------------------cchhhhhhhccccccHHHHHHHHHhh--Cccchhh
Confidence 999876543321 12789999999999999999999999 9999999
Q ss_pred eecc-----ccEEEEEeCCHHHHHHHHHHcCCC-eeC--CeeeEEEecCCCC
Q 015149 286 VQRD-----KGFGFVRYSTHPEAALAIQMGNAR-ILC--GKPIKCSWGSKPT 329 (412)
Q Consensus 286 i~~~-----kg~afV~f~~~~~A~~A~~~l~g~-~l~--g~~l~V~~a~~~~ 329 (412)
|++| ||||||+|.+.|.|..|++.|||. .+. ..+|.|+||....
T Consensus 156 ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 156 ILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred heecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCC
Confidence 9997 899999999999999999999998 454 4789999998654
No 25
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=5.3e-29 Score=227.37 Aligned_cols=264 Identities=24% Similarity=0.390 Sum_probs=195.7
Q ss_pred CCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC---CCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccC
Q 015149 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (412)
Q Consensus 47 ~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~---~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~ 123 (412)
.-.|.|+|||+.+.+.+|..+|+.||.|.+|.|.+.+. .|||||+|....+|.+|++.+|+..|.||+|.|.|+-++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 45699999999999999999999999999999987643 689999999999999999999999999999999998521
Q ss_pred CC------------------------------------------------------------------------------
Q 015149 124 SQ------------------------------------------------------------------------------ 125 (412)
Q Consensus 124 ~~------------------------------------------------------------------------------ 125 (412)
..
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 00
Q ss_pred ---------CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh--
Q 015149 126 ---------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL-- 194 (412)
Q Consensus 126 ---------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l-- 194 (412)
+.+.....+|||+|||+++++++|.+.|++||+|....++.++.|++++|.|||.|.+..+|..||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 001111257999999999999999999999999999999999999999999999999999999999866
Q ss_pred ---CC-ceeCCeEEEEEEccCCCCCCCc------cccCCcccccccccCCCCCCCC---------------------CCC
Q 015149 195 ---NG-KWLGNRQIRCNWAAKGATSGDE------KQSSDSKSVVELTNGISDGQEK---------------------SNE 243 (412)
Q Consensus 195 ---~~-~~~~g~~l~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 243 (412)
.| ..++||.|.|..+........- ..............+....... ...
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~l 436 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKL 436 (678)
T ss_pred cCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhh
Confidence 23 6789999999988654322111 0000000111111111000000 001
Q ss_pred CCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCc---ccE-EEEEeecc---------ccEEEEEeCCHHHHHHHHHHc
Q 015149 244 DAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCV---GTI-EDVRVQRD---------KGFGFVRYSTHPEAALAIQMG 310 (412)
Q Consensus 244 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~---G~v-~~v~i~~~---------kg~afV~f~~~~~A~~A~~~l 310 (412)
..+...-+..+|.|+|||..++...|..+...... +.+ ..|+.+++ .||+|+.|...+.|.+|+..+
T Consensus 437 knpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 437 KNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred cCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 11222234467899999999999999888765311 222 22344332 689999999999999999875
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=1e-27 Score=234.34 Aligned_cols=176 Identities=30% Similarity=0.527 Sum_probs=150.9
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
....++|||+|||..+++++|+++|+.||.|.+|+++.|+.+++++|||||+|.+.++|.+||. ++|..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3456789999999999999999999999999999999999999999999999999999999998 999999999999988
Q ss_pred ccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeec
Q 015149 209 AAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR 288 (412)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~ 288 (412)
+........... .......+...+|||+|||..+++++|+++|+.| |.|..|.+.+
T Consensus 165 ~~~~~~~~~~~~----------------------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~--G~i~~v~~~~ 220 (457)
T TIGR01622 165 SQAEKNRAAKAA----------------------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPF--GDIEDVQLHR 220 (457)
T ss_pred cchhhhhhhhcc----------------------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc--CCeEEEEEEE
Confidence 654322111000 0000011225899999999999999999999999 9999999985
Q ss_pred c------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 289 D------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 289 ~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
+ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+....
T Consensus 221 d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~ 267 (457)
T TIGR01622 221 DPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDST 267 (457)
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCC
Confidence 4 6899999999999999999999999999999999988543
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.5e-28 Score=203.03 Aligned_cols=164 Identities=29% Similarity=0.617 Sum_probs=149.6
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeec----CCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~----~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
..+.+--|||+.|...++.++|++.|.+||+|.++++++| +++||+||.|.+.++|++||..+||.=|.+|.|+-.
T Consensus 58 t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTN 137 (321)
T KOG0148|consen 58 TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTN 137 (321)
T ss_pred ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecc
Confidence 3344566999999999999999999999999999999998 468999999999999999999999999999999999
Q ss_pred ecccCCCC-------------cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHH
Q 015149 119 WAYASSQR-------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQE 185 (412)
Q Consensus 119 ~~~~~~~~-------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~ 185 (412)
|+..+... .....+++|||+||+.-++|+++++.|+.||+|.+|++++| +||+||.|++.|
T Consensus 138 WATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkE 211 (321)
T KOG0148|consen 138 WATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKE 211 (321)
T ss_pred ccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchh
Confidence 99876532 23345688999999999999999999999999999999977 799999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 186 DAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 186 ~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
.|..||-.+|+.++.|+.+++.|-+..
T Consensus 212 aAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred hHHHHHHHhcCceeCceEEEEeccccC
Confidence 999999999999999999999997654
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.4e-28 Score=213.99 Aligned_cols=210 Identities=26% Similarity=0.485 Sum_probs=164.6
Q ss_pred ceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
++|||+.|.+.+.|+.|+..|.+||+|+++.+.||+.|+++||||||+|+-.|.|..|++.+||..++||.|+|.+...-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999743221
Q ss_pred CCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc---
Q 015149 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--- 289 (412)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~--- 289 (412)
.... +... .........++|||..+.++++++||+.+|+.| |+|..|.+-++
T Consensus 194 pQAQ---------piID--------------~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF--G~I~~C~LAr~pt~ 248 (544)
T KOG0124|consen 194 PQAQ---------PIID--------------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF--GEIVKCQLARAPTG 248 (544)
T ss_pred cccc---------hHHH--------------HHHHHHHhhheEEeeecCCCccHHHHHHHHHhh--cceeeEEeeccCCC
Confidence 1000 0000 000111234789999999999999999999999 99999999876
Q ss_pred ---ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhHh
Q 015149 290 ---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPPGTSSTPLPPPPAPHLPGFSATDLAAYERQIALSKI 366 (412)
Q Consensus 290 ---kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (412)
|||+||+|.+...-..|+..||-+.|+|..|+|..+-.++ ... +.|.....+|...+-+.+++++.+....+
T Consensus 249 ~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP--~aL---l~Pat~s~~P~aaaVAaAAaTAKi~A~eA 323 (544)
T KOG0124|consen 249 RGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP--DAL---LQPATVSAIPAAAAVAAAAATAKIMAAEA 323 (544)
T ss_pred CCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCC--chh---cCCCCcccCchHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999996554332 222 22333344454445555666666666666
Q ss_pred hccccC
Q 015149 367 AGAQAL 372 (412)
Q Consensus 367 ~~~~~~ 372 (412)
++..+.
T Consensus 324 vAg~av 329 (544)
T KOG0124|consen 324 VAGSAV 329 (544)
T ss_pred hccCCc
Confidence 554443
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=1.9e-27 Score=229.68 Aligned_cols=193 Identities=23% Similarity=0.390 Sum_probs=160.4
Q ss_pred HHHHHHHHHHhCCCccCCceeEEEecccCCC--CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCC
Q 015149 95 RRSAALAIVTLNGRHIFGQPIKVNWAYASSQ--REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR 172 (412)
Q Consensus 95 ~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~~--~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~ 172 (412)
.++|.+||.++++..+........+..+... .......++|||+|||++++|++|+++|++||.|.+++|++| .+|+
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~ 97 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQ 97 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCC
Confidence 6789999999999888777666666644322 223345689999999999999999999999999999999999 8999
Q ss_pred cccEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCC
Q 015149 173 SRGFGFVSFRNQEDAQSAINDLNGKWLG-NRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQ 251 (412)
Q Consensus 173 ~~g~afV~f~~~~~A~~ai~~l~~~~~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (412)
+||||||+|.+.++|++||+.|++..+. |+.|.|.++..
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~---------------------------------------- 137 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD---------------------------------------- 137 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc----------------------------------------
Confidence 9999999999999999999999999884 77777755422
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEee-------ccccEEEEEeCCHHHHHHHHHHcCC--CeeCCeeeEE
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ-------RDKGFGFVRYSTHPEAALAIQMGNA--RILCGKPIKC 322 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~-------~~kg~afV~f~~~~~A~~A~~~l~g--~~l~g~~l~V 322 (412)
.++|||+|||.++++++|++.|++++.+ ++++.+. +++|||||+|.+.++|.+|++.|+. ..+.|+.|.|
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~eg-vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEG-VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCC-ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 1789999999999999999999999433 4444442 2379999999999999999998764 3678999999
Q ss_pred EecCCCC
Q 015149 323 SWGSKPT 329 (412)
Q Consensus 323 ~~a~~~~ 329 (412)
.|+.+..
T Consensus 217 dwA~p~~ 223 (578)
T TIGR01648 217 DWAEPEE 223 (578)
T ss_pred Eeecccc
Confidence 9998654
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=7.3e-27 Score=194.54 Aligned_cols=166 Identities=30% Similarity=0.505 Sum_probs=150.8
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
.....+|.|.-||..++++||+.+|...|+|++|++++|+.+|.+-||+||.|.+++||++|+..|||..+..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeec
Q 015149 209 AAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR 288 (412)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~ 288 (412)
+++...... ...|||.+||...|..+|+++|++| |.|..-+|+.
T Consensus 118 ARPSs~~Ik----------------------------------~aNLYvSGlPktMtqkelE~iFs~f--GrIItSRiL~ 161 (360)
T KOG0145|consen 118 ARPSSDSIK----------------------------------DANLYVSGLPKTMTQKELEQIFSPF--GRIITSRILV 161 (360)
T ss_pred ccCChhhhc----------------------------------ccceEEecCCccchHHHHHHHHHHh--hhhhhhhhhh
Confidence 976533221 1579999999999999999999999 9999999887
Q ss_pred c------ccEEEEEeCCHHHHHHHHHHcCCCeeCC--eeeEEEecCCCCC
Q 015149 289 D------KGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGSKPTP 330 (412)
Q Consensus 289 ~------kg~afV~f~~~~~A~~A~~~l~g~~l~g--~~l~V~~a~~~~~ 330 (412)
| ||.+||.|+..++|.+|++.|||..-.| .+|.|+|+..+..
T Consensus 162 dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 162 DQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred hcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 7 8999999999999999999999997655 6899999987643
No 31
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.95 E-value=4.3e-25 Score=196.61 Aligned_cols=163 Identities=23% Similarity=0.315 Sum_probs=136.7
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhc-cCCcceEEEeecC---CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSS-TGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~-~G~i~~v~~~~~~---~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
...|.+||+|||++....+|+++|.. .|+|+-|.++.+. .+|+|.|+|+++|.+++|++.||...+.||+|.|+-.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 45577999999999999999999985 6799999998874 5899999999999999999999999999999999855
Q ss_pred ccCC--------------------------------------------C------C------------------------
Q 015149 121 YASS--------------------------------------------Q------R------------------------ 126 (412)
Q Consensus 121 ~~~~--------------------------------------------~------~------------------------ 126 (412)
+... . +
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 4100 0 0
Q ss_pred --------cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCce
Q 015149 127 --------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (412)
Q Consensus 127 --------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~ 198 (412)
....-+.++||.||.+.+..+.|++.|.-.|.|..+.+-.|++ |.++|+|.++|.+.-+|-.||..+++.-
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCC
Confidence 0111234599999999999999999999999999999988865 5899999999999999999999998766
Q ss_pred eCCeEEEEEE
Q 015149 199 LGNRQIRCNW 208 (412)
Q Consensus 199 ~~g~~l~v~~ 208 (412)
+..++..+..
T Consensus 281 ~~~~~~~~Rl 290 (608)
T KOG4212|consen 281 LFDRRMTVRL 290 (608)
T ss_pred Cccccceeec
Confidence 6666655544
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=1.1e-26 Score=183.73 Aligned_cols=172 Identities=34% Similarity=0.637 Sum_probs=154.1
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
+...-.||||+||+..++++-|.++|-+.|+|.++++.+++ .+||||++|.+.|+|+-|++-||...+.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34456789999999999999999999999999999998875 58999999999999999999999999999999999
Q ss_pred ecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeE-EEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc
Q 015149 119 WAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197 (412)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~-~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~ 197 (412)
.+. ....+...+.++||+||.+.++|.-|.+.|+.||.+... .+++|..||.++||+||.|.+.+.+.+|+..++|+
T Consensus 85 kas--~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq 162 (203)
T KOG0131|consen 85 KAS--AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQ 162 (203)
T ss_pred ecc--cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccc
Confidence 887 333344445789999999999999999999999998653 78889999999999999999999999999999999
Q ss_pred eeCCeEEEEEEccCCCCCC
Q 015149 198 WLGNRQIRCNWAAKGATSG 216 (412)
Q Consensus 198 ~~~g~~l~v~~~~~~~~~~ 216 (412)
.+.++++.|.++.++....
T Consensus 163 ~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 163 YLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred hhcCCceEEEEEEecCCCc
Confidence 9999999999997765444
No 33
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=8.7e-26 Score=201.94 Aligned_cols=198 Identities=23% Similarity=0.393 Sum_probs=162.5
Q ss_pred EecCHHHHHHHHHHhCCCccCCceeEEEecccC-------CCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEE
Q 015149 91 DYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS-------SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDAR 163 (412)
Q Consensus 91 ~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~-------~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~ 163 (412)
...+.++|.++|.+-.+. .|.|+-...+ .......-.+-|||+.||.++.|+||.-+|++.|+|.+++
T Consensus 40 ~~~~~eaal~al~E~tgy-----~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elR 114 (506)
T KOG0117|consen 40 GVQSEEAALKALLERTGY-----TLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELR 114 (506)
T ss_pred ccccHHHHHHHHHHhcCc-----eEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEE
Confidence 344578888888666543 3344322211 1122224456799999999999999999999999999999
Q ss_pred EeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee-CCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCC
Q 015149 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL-GNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSN 242 (412)
Q Consensus 164 ~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~-~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (412)
++.|+.+|.+||||||+|.+.++|++||+.||+.+| .|+.|.|..+..+
T Consensus 115 LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan------------------------------ 164 (506)
T KOG0117|consen 115 LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVAN------------------------------ 164 (506)
T ss_pred EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeec------------------------------
Confidence 999999999999999999999999999999999998 6899999887655
Q ss_pred CCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-------ccEEEEEeCCHHHHHHHHHHc-CCC-
Q 015149 243 EDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-------KGFGFVRYSTHPEAALAIQMG-NAR- 313 (412)
Q Consensus 243 ~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l-~g~- 313 (412)
++|||+|||...++++|++.|++.+. .|++|.+..+ ||||||+|.+..+|..|..+| +|.
T Consensus 165 ----------~RLFiG~IPK~k~keeIlee~~kVte-GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~ 233 (506)
T KOG0117|consen 165 ----------CRLFIGNIPKTKKKEEILEEMKKVTE-GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKI 233 (506)
T ss_pred ----------ceeEeccCCccccHHHHHHHHHhhCC-CeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCce
Confidence 89999999999999999999999974 4777777643 899999999999999998766 444
Q ss_pred eeCCeeeEEEecCCCCCCCCC
Q 015149 314 ILCGKPIKCSWGSKPTPPGTS 334 (412)
Q Consensus 314 ~l~g~~l~V~~a~~~~~~~~~ 334 (412)
.+-|..+.|+||.+...+...
T Consensus 234 klwgn~~tVdWAep~~e~ded 254 (506)
T KOG0117|consen 234 KLWGNAITVDWAEPEEEPDED 254 (506)
T ss_pred eecCCcceeeccCcccCCChh
Confidence 578999999999987755433
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=1.4e-26 Score=183.06 Aligned_cols=170 Identities=32% Similarity=0.506 Sum_probs=149.2
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
+.+...+|||+||+..++++-|.++|-..|+|.++++.+|+.+...+|||||+|.++|+|+.|++-|+...+.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEE-EEe
Q 015149 208 WAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED-VRV 286 (412)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~-v~i 286 (412)
.+...... ...+.+|||+||.+.+++..|.+.|+.| |.+.. -.+
T Consensus 85 kas~~~~n---------------------------------l~vganlfvgNLd~~vDe~~L~dtFsaf--G~l~~~P~i 129 (203)
T KOG0131|consen 85 KASAHQKN---------------------------------LDVGANLFVGNLDPEVDEKLLYDTFSAF--GVLISPPKI 129 (203)
T ss_pred eccccccc---------------------------------ccccccccccccCcchhHHHHHHHHHhc--cccccCCcc
Confidence 88522111 1112679999999999999999999999 77665 355
Q ss_pred ecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCCCC
Q 015149 287 QRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPPG 332 (412)
Q Consensus 287 ~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~~~ 332 (412)
+++ +|+|||.|.+.+.+.+|+..+||..++.++++|+++..+...+
T Consensus 130 ~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 130 MRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred cccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 544 7899999999999999999999999999999999998776543
No 35
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.93 E-value=3e-24 Score=189.96 Aligned_cols=275 Identities=19% Similarity=0.311 Sum_probs=207.3
Q ss_pred CCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCC--ceeEEEecc---
Q 015149 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAY--- 121 (412)
Q Consensus 47 ~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g--~~l~v~~~~--- 121 (412)
--.+.|.++-+.++-|-|..+|++||.|..|.-+.+.+.-.|+|+|.+.+.|..|...|+|..|.+ +.|++.|++
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~ 229 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTD 229 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhccc
Confidence 345788999999999999999999999998766555444479999999999999999999998874 456666654
Q ss_pred -------cCCC-------------------------------------------------CcCCC-CCceEEECCCCcc-
Q 015149 122 -------ASSQ-------------------------------------------------REDTS-GHFNVFVGDLSPE- 143 (412)
Q Consensus 122 -------~~~~-------------------------------------------------~~~~~-~~~~l~v~nlp~~- 143 (412)
.+.. +.... .+..|.|.||...
T Consensus 230 LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~ 309 (492)
T KOG1190|consen 230 LNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEA 309 (492)
T ss_pred ceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhc
Confidence 0000 00000 1356788888755
Q ss_pred ccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCccccCC
Q 015149 144 VTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223 (412)
Q Consensus 144 ~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~ 223 (412)
+|.+-|..+|+.||+|..|+|++.+. -.|+|+|.+...|..|++.|+|..|.|++|+|.+++............+
T Consensus 310 VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d 384 (492)
T KOG1190|consen 310 VTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQED 384 (492)
T ss_pred cchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCcc
Confidence 89999999999999999999997753 4699999999999999999999999999999999987765443322221
Q ss_pred cccccccccCCCCCCCCC-CCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEee-ccccEEEEEeCCHH
Q 015149 224 SKSVVELTNGISDGQEKS-NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ-RDKGFGFVRYSTHP 301 (412)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~-~~kg~afV~f~~~~ 301 (412)
..-........-.....+ ...-....+++.+|++.|+|.+++||+|+++|..-| |.|+..+.. +|+.++++.+.+.|
T Consensus 385 ~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g-~~vkafkff~kd~kmal~q~~sve 463 (492)
T KOG1190|consen 385 QGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPG-GQVKAFKFFQKDRKMALPQLESVE 463 (492)
T ss_pred ccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCC-ceEEeeeecCCCcceeecccCChh
Confidence 111111111111111111 111222347788999999999999999999999984 566666654 47899999999999
Q ss_pred HHHHHHHHcCCCeeCC-eeeEEEecCC
Q 015149 302 EAALAIQMGNARILCG-KPIKCSWGSK 327 (412)
Q Consensus 302 ~A~~A~~~l~g~~l~g-~~l~V~~a~~ 327 (412)
+|..|+-.+|.+.+++ ..|||+|.+.
T Consensus 464 eA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 464 EAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred HhhhhccccccccCCCCceEEEEeecc
Confidence 9999999999999865 5999999875
No 36
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=2e-25 Score=189.05 Aligned_cols=149 Identities=23% Similarity=0.425 Sum_probs=138.2
Q ss_pred ceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
.+|||+|||..+++.+|+.+|++||.|.+|.|+ |.|+||..++...++.||.+|++..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 369999999999999999999999999999999 558999999999999999999999999999999988765
Q ss_pred CCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccE
Q 015149 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGF 292 (412)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~ 292 (412)
.. ...+|+|+||.+.++.++|+..|++| |.|.+|+|.+| +
T Consensus 75 sk------------------------------------~stkl~vgNis~tctn~ElRa~fe~y--gpviecdivkd--y 114 (346)
T KOG0109|consen 75 SK------------------------------------ASTKLHVGNISPTCTNQELRAKFEKY--GPVIECDIVKD--Y 114 (346)
T ss_pred CC------------------------------------CccccccCCCCccccCHHHhhhhccc--CCceeeeeecc--e
Confidence 21 22689999999999999999999999 99999999987 9
Q ss_pred EEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 293 GFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 293 afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
+||.|...++|..|++.|+|.+|.|++|+|....++-
T Consensus 115 ~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 115 AFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred eEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 9999999999999999999999999999999877644
No 37
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.92 E-value=3.5e-24 Score=189.48 Aligned_cols=278 Identities=18% Similarity=0.207 Sum_probs=200.7
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCC--CccCCceeEEEecc
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG--RHIFGQPIKVNWAY 121 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~--~~~~g~~l~v~~~~ 121 (412)
..+++.|.++|||++++|+||.+++.+||.|..+.+.+.++ .||++|.|.+.|...+..... -.+.|++|.|.|+.
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn--QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn 102 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN--QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSN 102 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch--hhhhhhcchhhhhheeecccccCccccCcceeehhhh
Confidence 34789999999999999999999999999999988877655 899999999999885544433 23668888888765
Q ss_pred cCCC----------------------------Cc--C-----C--CCCceEEECCCCccccHHHHHHHhhcCCCeeeEEE
Q 015149 122 ASSQ----------------------------RE--D-----T--SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARV 164 (412)
Q Consensus 122 ~~~~----------------------------~~--~-----~--~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~ 164 (412)
-+.- .. . . ..--+++|.++-+.++-|-|..+|++||.|..+..
T Consensus 103 ~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiT 182 (492)
T KOG1190|consen 103 HSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIIT 182 (492)
T ss_pred HHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEE
Confidence 1100 00 0 0 01135788999999999999999999999988766
Q ss_pred eecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC--CeEEEEEEccCCCCCCCcc---ccCCcccccccc--------
Q 015149 165 MWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG--NRQIRCNWAAKGATSGDEK---QSSDSKSVVELT-------- 231 (412)
Q Consensus 165 ~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~--g~~l~v~~~~~~~~~~~~~---~~~~~~~~~~~~-------- 231 (412)
+.. ...--|+|+|.+.+.|..|...|+|+.|. .+.|++.|+........-. ......+....+
T Consensus 183 F~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~ 258 (492)
T KOG1190|consen 183 FTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQ 258 (492)
T ss_pred Eec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccch
Confidence 521 22233999999999999999999999873 3678888876543221100 000000000000
Q ss_pred ----------------cCCCCCCCCCCCCCCCCCCC--cceEEEecCCC-CCCHHHHHHHHhhcCcccEEEEEeeccc-c
Q 015149 232 ----------------NGISDGQEKSNEDAPENNPQ--YTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRDK-G 291 (412)
Q Consensus 232 ----------------~~~~~~~~~~~~~~~~~~~~--~~~l~V~nL~~-~~t~~~L~~~F~~~~~G~v~~v~i~~~k-g 291 (412)
.............+.....+ ...|.|.||.. .+|.+.|..+|+-| |+|.+|+|..+| -
T Consensus 259 ~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvY--GdVqRVkil~nkkd 336 (492)
T KOG1190|consen 259 LMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVY--GDVQRVKILYNKKD 336 (492)
T ss_pred hhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhh--cceEEEEeeecCCc
Confidence 00000000000000111111 47888999976 78999999999999 999999999885 5
Q ss_pred EEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 292 FGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 292 ~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
.|+|+|.+...|.-|++.|+|..+.||+|+|.+.|-..
T Consensus 337 ~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 337 NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 79999999999999999999999999999999988544
No 38
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=7.7e-24 Score=209.90 Aligned_cols=187 Identities=16% Similarity=0.287 Sum_probs=137.7
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcC------------CCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVF------------PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~------------G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~ 195 (412)
.....++|||+|||+.+++++|+++|..+ +.|..+.+ ++.+|||||+|.+.++|..||. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34456899999999999999999999874 23333333 3568999999999999999996 99
Q ss_pred CceeCCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhh
Q 015149 196 GKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 275 (412)
Q Consensus 196 ~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~ 275 (412)
|..+.|+.|.|.+.................. ....... ...............+|||+|||..+++++|+++|+.
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~ 318 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKN----PDDNAKN-VEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLES 318 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCC----Ccccccc-cccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 9999999999976543321110000000000 0000000 0000011112234579999999999999999999999
Q ss_pred cCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCC
Q 015149 276 LCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328 (412)
Q Consensus 276 ~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~ 328 (412)
| |.|..+.++++ +|||||+|.+.++|..|+..|||..|+|+.|+|.++...
T Consensus 319 ~--G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 319 F--GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred c--CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 9 99999999865 799999999999999999999999999999999998654
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=9.8e-25 Score=184.91 Aligned_cols=148 Identities=26% Similarity=0.487 Sum_probs=138.5
Q ss_pred EEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCCCCcC
Q 015149 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRED 128 (412)
Q Consensus 49 tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~~~~~ 128 (412)
+|||+|||..+++.+|+.+|++||+|.+|.|+++ |+||..++...|..|+..|++..+.|..|.|+-++.+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK----- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK----- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceecceEEEEEecccc-----
Confidence 5999999999999999999999999999999875 9999999999999999999999999999999988765
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
...+.+|+|+||.+.++.+||+..|++||+|.+++|+ ++|+||.|...++|..|++.|+++++.|+++.|..
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee--------cceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 3456789999999999999999999999999999999 55899999999999999999999999999999998
Q ss_pred ccCCC
Q 015149 209 AAKGA 213 (412)
Q Consensus 209 ~~~~~ 213 (412)
+...-
T Consensus 147 stsrl 151 (346)
T KOG0109|consen 147 STSRL 151 (346)
T ss_pred ecccc
Confidence 86653
No 40
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.91 E-value=2.5e-22 Score=182.49 Aligned_cols=275 Identities=18% Similarity=0.230 Sum_probs=195.5
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeec--CCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK--DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~--~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
+.++..-|.+++|||++|++||++||+.++ |+++.+.+. +..|-|||+|.+.+++.+|+ +++...+..|.|.|--+
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFTA 83 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEcc
Confidence 445567799999999999999999999996 888877765 45789999999999999999 68888899999999766
Q ss_pred ccCCC--------CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeee-EEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 015149 121 YASSQ--------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD-ARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191 (412)
Q Consensus 121 ~~~~~--------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~-~~~~~d~~~~~~~g~afV~f~~~~~A~~ai 191 (412)
..... .........|.+++||+.|+++||.++|+..-.|.. +.+..| ..+++.|.|||.|++.+.|+.|+
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHH
Confidence 43321 222245568999999999999999999998866655 344555 45779999999999999999999
Q ss_pred HHhCCceeCCeEEEEEEccCCCCCCCc-------------cccCCcccccccccCCC-----------------------
Q 015149 192 NDLNGKWLGNRQIRCNWAAKGATSGDE-------------KQSSDSKSVVELTNGIS----------------------- 235 (412)
Q Consensus 192 ~~l~~~~~~g~~l~v~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~----------------------- 235 (412)
. -+...|+.|.|.|..+......... .................
T Consensus 163 ~-rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~ 241 (510)
T KOG4211|consen 163 G-RHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPS 241 (510)
T ss_pred H-HHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcc
Confidence 9 5667788888888765321100000 00000000000000000
Q ss_pred --C----------C-C--C----CC----CCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEee--cc-
Q 015149 236 --D----------G-Q--E----KS----NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ--RD- 289 (412)
Q Consensus 236 --~----------~-~--~----~~----~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~--~~- 289 (412)
+ . . . .. ........+....++.++||+..++.++.++|+.. ....|.|. .+
T Consensus 242 ~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl---~p~~v~i~ig~dG 318 (510)
T KOG4211|consen 242 LQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL---NPYRVHIEIGPDG 318 (510)
T ss_pred ccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC---CceeEEEEeCCCC
Confidence 0 0 0 0 00 00000111223678999999999999999999986 33355443 33
Q ss_pred --ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 290 --KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 290 --kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
.|.|+|+|.|.++|..|+.+ ++..+..+.|.+...
T Consensus 319 r~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln 355 (510)
T KOG4211|consen 319 RATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLN 355 (510)
T ss_pred ccCCcceeecccchhhHhhhcc-CCcccCcceeeeccc
Confidence 78999999999999999987 888888888887554
No 41
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=2.4e-22 Score=190.00 Aligned_cols=165 Identities=24% Similarity=0.420 Sum_probs=146.5
Q ss_pred EEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCC-------CEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc
Q 015149 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS-------SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (412)
Q Consensus 49 tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~-------g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~ 121 (412)
+|||.||+++.+.++|...|...|.|.++.|.+.+.+ |||||+|.+.++|..|++.|+|+.+.|+.|.|+++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 3999999999999999999999999999988776543 999999999999999999999999999999999998
Q ss_pred cCCC------CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 015149 122 ASSQ------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (412)
Q Consensus 122 ~~~~------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~ 195 (412)
.... .......++|.|+|||+..+..+|+.+|..||.|.+|++..-...+.++|||||+|-+..+|.+|++.|.
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ 676 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG 676 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhc
Confidence 2211 1112224689999999999999999999999999999998765556789999999999999999999999
Q ss_pred CceeCCeEEEEEEccCCC
Q 015149 196 GKWLGNRQIRCNWAAKGA 213 (412)
Q Consensus 196 ~~~~~g~~l~v~~~~~~~ 213 (412)
.+.+.||.|.++|+....
T Consensus 677 STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 677 STHLYGRRLVLEWAKSDN 694 (725)
T ss_pred ccceechhhheehhccch
Confidence 999999999999997654
No 42
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=4.8e-22 Score=166.54 Aligned_cols=176 Identities=27% Similarity=0.447 Sum_probs=153.2
Q ss_pred CCCCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC---CCCEEEEEecCHHHHHHHHHHhCCCc-cCC-
Q 015149 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRH-IFG- 112 (412)
Q Consensus 38 ~~~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~---~~g~afV~f~~~~~A~~Al~~l~~~~-~~g- 112 (412)
-.+.....+.|+|||+-|.+.-+|||++.+|..||+|++|.+.+.. ++|||||.|.+.-+|..||..|+|.. +.|
T Consensus 10 adsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGA 89 (371)
T KOG0146|consen 10 ADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGA 89 (371)
T ss_pred cccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCC
Confidence 3344455567889999999999999999999999999999999864 58999999999999999999999954 444
Q ss_pred -ceeEEEecccC--------------------------------------------------------------------
Q 015149 113 -QPIKVNWAYAS-------------------------------------------------------------------- 123 (412)
Q Consensus 113 -~~l~v~~~~~~-------------------------------------------------------------------- 123 (412)
..|.|++++..
T Consensus 90 SSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~ 169 (371)
T KOG0146|consen 90 SSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAAL 169 (371)
T ss_pred ccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHH
Confidence 57888888600
Q ss_pred --------------------------------------------------------------------------------
Q 015149 124 -------------------------------------------------------------------------------- 123 (412)
Q Consensus 124 -------------------------------------------------------------------------------- 123 (412)
T Consensus 170 ~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g 249 (371)
T KOG0146|consen 170 NANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAG 249 (371)
T ss_pred hhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhh
Confidence
Q ss_pred ---------------------------CCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccE
Q 015149 124 ---------------------------SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGF 176 (412)
Q Consensus 124 ---------------------------~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~ 176 (412)
...++..+.++|||..||.+..+.||...|-.||.|.+.+++.|+.|+.+|.|
T Consensus 250 ~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCF 329 (371)
T KOG0146|consen 250 VQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCF 329 (371)
T ss_pred HHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccce
Confidence 01244556678999999999999999999999999999999999999999999
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 015149 177 GFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213 (412)
Q Consensus 177 afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~ 213 (412)
+||.|.+..+|..||..+||..|+=++|+|...+++.
T Consensus 330 GFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 330 GFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred eeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 9999999999999999999999999999998776654
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=9.8e-22 Score=164.67 Aligned_cols=213 Identities=24% Similarity=0.341 Sum_probs=159.7
Q ss_pred CceeEEEecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 015149 112 GQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191 (412)
Q Consensus 112 g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai 191 (412)
+|.|.|+.+.... ...+.++|||+.|.+.-.|+|++++|..||+|++|.+++. ..|.+||++||.|.+..+|..||
T Consensus 2 nrpiqvkpadses---rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSES---RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCcccccccccc---CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHH
Confidence 4677887765433 2336789999999999999999999999999999999877 46899999999999999999999
Q ss_pred HHhCCce-eCC--eEEEEEEccCCCCCCCc--------------------------------------------------
Q 015149 192 NDLNGKW-LGN--RQIRCNWAAKGATSGDE-------------------------------------------------- 218 (412)
Q Consensus 192 ~~l~~~~-~~g--~~l~v~~~~~~~~~~~~-------------------------------------------------- 218 (412)
..|+|.. +.| ..|.|++++.+++...+
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~ 157 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAA 157 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhh
Confidence 9999865 433 67899998766422100
Q ss_pred --------------------------cccCCcc----ccccc-----ccCCCCC--------------------------
Q 015149 219 --------------------------KQSSDSK----SVVEL-----TNGISDG-------------------------- 237 (412)
Q Consensus 219 --------------------------~~~~~~~----~~~~~-----~~~~~~~-------------------------- 237 (412)
....... ..... ..+....
T Consensus 158 ~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp 237 (371)
T KOG0146|consen 158 FAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSP 237 (371)
T ss_pred hHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCc
Confidence 0000000 00000 0000000
Q ss_pred ---------------------------------CCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEE
Q 015149 238 ---------------------------------QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV 284 (412)
Q Consensus 238 ---------------------------------~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v 284 (412)
....-..-...++.+++|||..||.+..+.+|...|-+| |.|++.
T Consensus 238 ~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PF--GhivSa 315 (371)
T KOG0146|consen 238 TVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPF--GHIVSA 315 (371)
T ss_pred cccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccc--cceeee
Confidence 000000001145677999999999999999999999999 999999
Q ss_pred Eeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCC
Q 015149 285 RVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 330 (412)
Q Consensus 285 ~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~ 330 (412)
++..| |.|+||.|+++..|..||..|||+-|+-|+|+|.+.+++..
T Consensus 316 KVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 316 KVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred eeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 98876 78999999999999999999999999999999999887754
No 44
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=2e-20 Score=148.38 Aligned_cols=173 Identities=21% Similarity=0.334 Sum_probs=135.9
Q ss_pred CCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
..+++|||+|||.++.+.||.++|.+||.|.+|.+... .....||||+|++..+|+.||..-+|..++|+.|+|++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45678999999999999999999999999999988733 345789999999999999999999999999999999999
Q ss_pred cCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc
Q 015149 210 AKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD 289 (412)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~ 289 (412)
...........+-... +...+ .......+........|.|.+||..-+|+||++++.+. |.|....+.+|
T Consensus 81 rggr~s~~~~G~y~gg-------grgGg-g~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea--GdvCfadv~rD 150 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGG-------GRGGG-GGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA--GDVCFADVQRD 150 (241)
T ss_pred cCCCcccccccccCCC-------CCCCC-CCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh--CCeeeeeeecc
Confidence 7765222211111100 00011 11111112223334789999999999999999999999 99999999888
Q ss_pred ccEEEEEeCCHHHHHHHHHHcCCCeeC
Q 015149 290 KGFGFVRYSTHPEAALAIQMGNARILC 316 (412)
Q Consensus 290 kg~afV~f~~~~~A~~A~~~l~g~~l~ 316 (412)
|.+.|+|...|+.+.|+.+|+...+.
T Consensus 151 -g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 151 -GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred -cceeeeeeehhhHHHHHHhhcccccc
Confidence 69999999999999999999988764
No 45
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.87 E-value=3e-22 Score=184.44 Aligned_cols=182 Identities=25% Similarity=0.377 Sum_probs=152.7
Q ss_pred CCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
...++||+.-|+...++.||.++|+.+|.|.+|+++.|+.+++++|.+||+|.+.+....||. |.|..+.|.+|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 345789999999999999999999999999999999999999999999999999999999997 9999999999999876
Q ss_pred cCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc
Q 015149 210 AKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD 289 (412)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~ 289 (412)
.......... . ..-.......+...|||+||.+++++++|+.+|++| |.|+.|.+.+|
T Consensus 256 Eaeknr~a~~-s-------------------~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepf--g~Ie~v~l~~d 313 (549)
T KOG0147|consen 256 EAEKNRAANA-S-------------------PALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPF--GKIENVQLTKD 313 (549)
T ss_pred HHHHHHHHhc-c-------------------ccccccccccchhhhhhcccccCchHHHHhhhccCc--ccceeeeeccc
Confidence 5443221000 0 000111112233449999999999999999999999 99999999887
Q ss_pred ------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCCCCCC
Q 015149 290 ------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPPGTS 334 (412)
Q Consensus 290 ------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~~~~~ 334 (412)
|||+||+|.+.++|.+|++.|||.+|.|+.|+|............
T Consensus 314 ~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a 364 (549)
T KOG0147|consen 314 SETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEA 364 (549)
T ss_pred cccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccc
Confidence 799999999999999999999999999999999988777655443
No 46
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.86 E-value=4.3e-19 Score=155.62 Aligned_cols=276 Identities=16% Similarity=0.130 Sum_probs=201.1
Q ss_pred CCCEEE--EcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCC--ceeEEEecc
Q 015149 46 TCRSVY--VGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAY 121 (412)
Q Consensus 46 ~~~tl~--V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g--~~l~v~~~~ 121 (412)
+++.|. |-|--+.+|.+-|..++...|+|.+|.|+++ +.-.|.|+|++.+.|++|...|||..|.. .+|+|+|++
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 344444 4455567999999999999999999988886 55689999999999999999999988863 689999887
Q ss_pred cCCCC---------------------------------------------------------------------------
Q 015149 122 ASSQR--------------------------------------------------------------------------- 126 (412)
Q Consensus 122 ~~~~~--------------------------------------------------------------------------- 126 (412)
+.+-.
T Consensus 198 P~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g 277 (494)
T KOG1456|consen 198 PTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRG 277 (494)
T ss_pred cceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCC
Confidence 32100
Q ss_pred ----cCCCCCceEEECCCCcc-ccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 015149 127 ----EDTSGHFNVFVGDLSPE-VTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (412)
Q Consensus 127 ----~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g 201 (412)
....+...++|.+|... ++-+.|.++|..||.|+.|++++.+ .|.|+|++.+....++|+..|++..+.|
T Consensus 278 ~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG 352 (494)
T KOG1456|consen 278 YASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFG 352 (494)
T ss_pred CCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCcccc
Confidence 00112245899999876 6788999999999999999999764 5779999999999999999999999999
Q ss_pred eEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCC---CCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCc
Q 015149 202 RQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSN---EDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCV 278 (412)
Q Consensus 202 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~ 278 (412)
.+|.|..++.....................-..+....... .......+++++|+.-|.|..+|||.|.++|....
T Consensus 353 ~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~- 431 (494)
T KOG1456|consen 353 GKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKD- 431 (494)
T ss_pred ceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcC-
Confidence 99999998765443332111111110000000001111111 11122346779999999999999999999999874
Q ss_pred ccEEEEEeecc----ccEEEEEeCCHHHHHHHHHHcCCCeeCC------eeeEEEecCCC
Q 015149 279 GTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCG------KPIKCSWGSKP 328 (412)
Q Consensus 279 G~v~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~g------~~l~V~~a~~~ 328 (412)
....++++... ...+.++|++.++|..|+..+|...+.+ -.|++.|+.++
T Consensus 432 v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 432 VPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred CCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 33566776544 2468999999999999999999998865 34566665443
No 47
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.85 E-value=6.1e-19 Score=154.69 Aligned_cols=278 Identities=17% Similarity=0.163 Sum_probs=205.5
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHH--hCCCccCCceeEEEec
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVT--LNGRHIFGQPIKVNWA 120 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~--l~~~~~~g~~l~v~~~ 120 (412)
....+..|.|++|-..++|.||.+.++.||+|.-|.++. .+..|+|+|++.+.|..++.. -+...+.|..-.+.|+
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P--~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyS 104 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP--HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYS 104 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecc--ccceeeeeeccccchhhheehhccCcccccCchhhcccc
Confidence 345566799999999999999999999999998776655 445899999999999999843 2445677888888888
Q ss_pred ccCCCCcCC----CCCceE--EECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh
Q 015149 121 YASSQREDT----SGHFNV--FVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194 (412)
Q Consensus 121 ~~~~~~~~~----~~~~~l--~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l 194 (412)
.....++.. ..+..| .|-|--+.++.+-|..+....|.|..|.|++. +--.|+|||++.+.|.+|...|
T Consensus 105 tsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~al 179 (494)
T KOG1456|consen 105 TSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAAL 179 (494)
T ss_pred hhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhc
Confidence 654433322 223333 34555567899999999999999999988843 2346999999999999999999
Q ss_pred CCcee--CCeEEEEEEccCCCCCCCccc------cCC------------------cccc----ccccc---CCCCC--CC
Q 015149 195 NGKWL--GNRQIRCNWAAKGATSGDEKQ------SSD------------------SKSV----VELTN---GISDG--QE 239 (412)
Q Consensus 195 ~~~~~--~g~~l~v~~~~~~~~~~~~~~------~~~------------------~~~~----~~~~~---~~~~~--~~ 239 (412)
||-.| +.+.|+|+|+++......... ... .... ..... +...+ ..
T Consensus 180 NGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~ 259 (494)
T KOG1456|consen 180 NGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHG 259 (494)
T ss_pred ccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCC
Confidence 99876 457899999987642210000 000 0000 00000 00000 00
Q ss_pred ---------------CCCCCCCCCCCCcceEEEecCCC-CCCHHHHHHHHhhcCcccEEEEEeecc-ccEEEEEeCCHHH
Q 015149 240 ---------------KSNEDAPENNPQYTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPE 302 (412)
Q Consensus 240 ---------------~~~~~~~~~~~~~~~l~V~nL~~-~~t~~~L~~~F~~~~~G~v~~v~i~~~-kg~afV~f~~~~~ 302 (412)
......+....+...+.|.+|+. ..+-+.|..+|..| |.|..|++++. .|.|.|++.+..+
T Consensus 260 p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClY--GNV~rvkFmkTk~gtamVemgd~~a 337 (494)
T KOG1456|consen 260 PPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLY--GNVERVKFMKTKPGTAMVEMGDAYA 337 (494)
T ss_pred CCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhc--CceeeEEEeecccceeEEEcCcHHH
Confidence 01111224456778999999997 67899999999999 99999999988 4899999999999
Q ss_pred HHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 303 AALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 303 A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
..+|+..||+..+.|.+|.|.+.+...
T Consensus 338 ver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 338 VERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred HHHHHHHhccCccccceEEEeeccccc
Confidence 999999999999999999999887554
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.85 E-value=3.9e-21 Score=171.58 Aligned_cols=169 Identities=20% Similarity=0.426 Sum_probs=152.4
Q ss_pred CCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc
Q 015149 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~ 121 (412)
+.++|+|++|.|+++++.|+++|.+||+|.+|.+++++ +++|+||+|.+.+....+| ....+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 67889999999999999999999999999999999975 4789999999999999998 566788999999999988
Q ss_pred cCCCCcCCC---CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCce
Q 015149 122 ASSQREDTS---GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (412)
Q Consensus 122 ~~~~~~~~~---~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~ 198 (412)
++....... ...+|||++||.++++++++++|++||.|.++.+++|+.+.+++||+||.|.+++.+++++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 776544433 35689999999999999999999999999999999999999999999999999999999988 78889
Q ss_pred eCCeEEEEEEccCCCCCC
Q 015149 199 LGNRQIRCNWAAKGATSG 216 (412)
Q Consensus 199 ~~g~~l~v~~~~~~~~~~ 216 (412)
|.|+.+.|+.+.++....
T Consensus 163 ~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ecCceeeEeeccchhhcc
Confidence 999999999998875544
No 49
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=1.2e-20 Score=176.44 Aligned_cols=266 Identities=21% Similarity=0.341 Sum_probs=203.7
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhcc-----------C-CcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCC
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSST-----------G-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~-----------G-~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g 112 (412)
...+.++|+++|..++++....+|..- | .+..|.+ +...++||++|.+.++|..++ .+++..+.|
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~--n~~~nfa~ie~~s~~~at~~~-~~~~~~f~g 249 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL--NLEKNFAFIEFRSISEATEAM-ALDGIIFEG 249 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee--cccccceeEEecCCCchhhhh-cccchhhCC
Confidence 556779999999999999999999863 3 3565555 445669999999999999999 799999999
Q ss_pred ceeEEEecccCCC--------------------CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCC
Q 015149 113 QPIKVNWAYASSQ--------------------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR 172 (412)
Q Consensus 113 ~~l~v~~~~~~~~--------------------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~ 172 (412)
.++++...+.... ........+++|++||..++++.+.++...||++....++.|..+|.
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~ 329 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGN 329 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccc
Confidence 9888875542211 12223446799999999999999999999999999999999999999
Q ss_pred cccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCc
Q 015149 173 SRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQY 252 (412)
Q Consensus 173 ~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
++||||.+|.+......|+..|||..++++.|.|..+................... ..........+.+.
T Consensus 330 skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~----------~i~~~~~q~~g~~t 399 (500)
T KOG0120|consen 330 SKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVP----------GIPLLMTQMAGIPT 399 (500)
T ss_pred ccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccc----------cchhhhcccCCCcc
Confidence 99999999999999999999999999999999999887665433222220000000 00001112233344
Q ss_pred ceEEEecCCC--CC-CH-------HHHHHHHhhcCcccEEEEEeecc---------ccEEEEEeCCHHHHHHHHHHcCCC
Q 015149 253 TTVYVGNLSS--EV-TS-------VDLHRHFHALCVGTIEDVRVQRD---------KGFGFVRYSTHPEAALAIQMGNAR 313 (412)
Q Consensus 253 ~~l~V~nL~~--~~-t~-------~~L~~~F~~~~~G~v~~v~i~~~---------kg~afV~f~~~~~A~~A~~~l~g~ 313 (412)
..|.+.|+=. ++ .+ |+++.-|.+| |.|..|.+.++ .|..||+|.+.+++.+|++.|+|.
T Consensus 400 ~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~--g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~Gr 477 (500)
T KOG0120|consen 400 EVLCLTNVVTPDELKDDEEYEEILEDVRTECAKF--GAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGR 477 (500)
T ss_pred hhhhhhhcCCHHHhcchHHHHHHHHHHHHHhccc--CceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCc
Confidence 5555555421 11 12 4556677788 99999999887 477899999999999999999999
Q ss_pred eeCCeeeEEEec
Q 015149 314 ILCGKPIKCSWG 325 (412)
Q Consensus 314 ~l~g~~l~V~~a 325 (412)
.|.||.+..+|-
T Consensus 478 KF~nRtVvtsYy 489 (500)
T KOG0120|consen 478 KFANRTVVASYY 489 (500)
T ss_pred eeCCcEEEEEec
Confidence 999999998874
No 50
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.85 E-value=6.7e-21 Score=170.06 Aligned_cols=168 Identities=28% Similarity=0.452 Sum_probs=147.6
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
...+|||++|+++++++.|+++|..||+|.++.+++|+.+++++||+||+|.+.+...+++. ...+.|+|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56789999999999999999999999999999999999999999999999999999999988 56678999999998886
Q ss_pred CCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-
Q 015149 211 KGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD- 289 (412)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~- 289 (412)
+......... ....++|||++||.++++++|++.|++| |.|.++.++.|
T Consensus 84 ~r~~~~~~~~----------------------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~--g~v~~~~~~~d~ 133 (311)
T KOG4205|consen 84 SREDQTKVGR----------------------------HLRTKKIFVGGLPPDTTEEDFKDYFEQF--GKVADVVIMYDK 133 (311)
T ss_pred Cccccccccc----------------------------ccceeEEEecCcCCCCchHHHhhhhhcc--ceeEeeEEeecc
Confidence 6543332211 1144799999999999999999999999 99999998876
Q ss_pred -----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCC
Q 015149 290 -----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 330 (412)
Q Consensus 290 -----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~ 330 (412)
+||+||+|.+++...+++.. +.+.|+|+.+.|..|.++..
T Consensus 134 ~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 134 TTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred cccccccceeeEeccccccceeccc-ceeeecCceeeEeeccchhh
Confidence 79999999999999998874 88899999999999887653
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=2.9e-20 Score=147.54 Aligned_cols=156 Identities=21% Similarity=0.338 Sum_probs=132.8
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC-CCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccC
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~-~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~ 123 (412)
...++|||+|||.++.+.||+++|-+||.|..|.+...+. ..||||+|+++.+|..||.-.+|..+.|..|+|+++..-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 4578899999999999999999999999999998865543 679999999999999999999999999999999998754
Q ss_pred CCC-----------------------cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEE
Q 015149 124 SQR-----------------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVS 180 (412)
Q Consensus 124 ~~~-----------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~ 180 (412)
... ....+..+|.|++||++-++.||++...+-|.|....+.+| |++.|+
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~ 156 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVE 156 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeee
Confidence 211 12234567999999999999999999999999988888866 479999
Q ss_pred ecCHHHHHHHHHHhCCcee--CCeEEEEE
Q 015149 181 FRNQEDAQSAINDLNGKWL--GNRQIRCN 207 (412)
Q Consensus 181 f~~~~~A~~ai~~l~~~~~--~g~~l~v~ 207 (412)
|...|+-+.|+.+|+.+.+ .|-...+.
T Consensus 157 ~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred eeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 9999999999999987765 34444333
No 52
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.84 E-value=1.7e-19 Score=149.13 Aligned_cols=191 Identities=19% Similarity=0.288 Sum_probs=149.9
Q ss_pred CCCceEEECCCCccccHHHHHH----HhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 130 SGHFNVFVGDLSPEVTDATLFA----CFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~----~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
..+.+|||.||+..+..++|++ +|+.||.|.+|... .+.+.||-|||.|.+.+.|..|+..|+|..+.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3344999999999999999988 99999999999888 5678999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCccccCCcc--------ccccc-----ccCC----CCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHH
Q 015149 206 CNWAAKGATSGDEKQSSDSK--------SVVEL-----TNGI----SDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVD 268 (412)
Q Consensus 206 v~~~~~~~~~~~~~~~~~~~--------~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~ 268 (412)
+.|++.+............. ..... ..+. .....+... .....++...|++.|||..++.+.
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF-LAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc-cccCCCCceEEEEecCCcchhHHH
Confidence 99998775443331110000 00000 0000 000000001 133467778999999999999999
Q ss_pred HHHHHhhcCcccEEEEEeecc-ccEEEEEeCCHHHHHHHHHHcCCCeeC-CeeeEEEecC
Q 015149 269 LHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARILC-GKPIKCSWGS 326 (412)
Q Consensus 269 L~~~F~~~~~G~v~~v~i~~~-kg~afV~f~~~~~A~~A~~~l~g~~l~-g~~l~V~~a~ 326 (412)
|..+|+.| ...++++++.. ++.|||+|.+...|..|...|.|..+- ...|+|.|++
T Consensus 163 l~~lf~qf--~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLFEQF--PGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHhhC--cccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999 88999999986 789999999999999999999999885 8889998875
No 53
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.82 E-value=5.3e-20 Score=161.79 Aligned_cols=277 Identities=17% Similarity=0.141 Sum_probs=189.6
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhcc----CCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSST----GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~----G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
-.+++..|..++|||..++.+|..||+-. |-+.-|.....+.+|.+.|.|.|.|.-+.|+ +.+.+.+.++.|.|.
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlal-kRhkhh~g~ryievY 134 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLAL-KRHKHHMGTRYIEVY 134 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhh-HhhhhhccCCceeee
Confidence 44566778999999999999999999953 2233233334456789999999999999999 677888889999998
Q ss_pred ecccCCCC----------c---CCCCCceEEECCCCccccHHHHHHHhhcC----CCeeeEEEeecCCCCCcccEEEEEe
Q 015149 119 WAYASSQR----------E---DTSGHFNVFVGDLSPEVTDATLFACFSVF----PTCSDARVMWDQKTGRSRGFGFVSF 181 (412)
Q Consensus 119 ~~~~~~~~----------~---~~~~~~~l~v~nlp~~~~~~~l~~~f~~~----G~v~~~~~~~d~~~~~~~g~afV~f 181 (412)
.+.....- . ...+--.|.+++||+++++.|+.++|..- |..+.+.++ .+.+|+..|-|||.|
T Consensus 135 ka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV-~rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 135 KATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFV-TRPDGRPTGDAFVLF 213 (508)
T ss_pred ccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEE-ECCCCCcccceEEEe
Confidence 77644211 1 11223458889999999999999999632 234444444 445789999999999
Q ss_pred cCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCC
Q 015149 182 RNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLS 261 (412)
Q Consensus 182 ~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~ 261 (412)
..+++|..|+. -+...++.|.|.+.++........-. .....+..... +............+ ......+|.+++||
T Consensus 214 a~ee~aq~aL~-khrq~iGqRYIElFRSTaaEvqqvln-r~~s~pLi~~~-~sp~~p~~p~~~~p-~~~~kdcvRLRGLP 289 (508)
T KOG1365|consen 214 ACEEDAQFALR-KHRQNIGQRYIELFRSTAAEVQQVLN-REVSEPLIPGL-TSPLLPGGPARLVP-PTRSKDCVRLRGLP 289 (508)
T ss_pred cCHHHHHHHHH-HHHHHHhHHHHHHHHHhHHHHHHHHH-hhccccccCCC-CCCCCCCCccccCC-CCCCCCeeEecCCC
Confidence 99999999998 45566776766665543221100000 00000000000 00000000111111 12235799999999
Q ss_pred CCCCHHHHHHHHhhcCcccEEE--EEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 262 SEVTSVDLHRHFHALCVGTIED--VRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 262 ~~~t~~~L~~~F~~~~~G~v~~--v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
+..+.|||.++|..|. -.|.. |.+..+ .|.|||+|.+.|+|..|..+.|....++|.|.|--+.
T Consensus 290 y~AtvEdIL~FlgdFa-~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 290 YEATVEDILDFLGDFA-TDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred hhhhHHHHHHHHHHHh-hhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 9999999999999983 34444 566544 6899999999999999999988888889999996554
No 54
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.81 E-value=1.2e-18 Score=144.25 Aligned_cols=161 Identities=20% Similarity=0.390 Sum_probs=139.2
Q ss_pred CCCCEEEEcCCCccCCHHHHHH----HhhccCCcceEEEeecC-CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEe
Q 015149 45 STCRSVYVGNIHPQVTNALLQE----VFSSTGPLEGCKLIKKD-KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~----~f~~~G~i~~v~~~~~~-~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~ 119 (412)
.++.||||.||...+..++|++ +|++||.|.+|..++.. .+|.|||.|.+.+.|..|+..|+|..|.|+++++.|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3455999999999999999988 99999999999888654 599999999999999999999999999999999999
Q ss_pred cccCCCC-----------------------------------------------cCCCCCceEEECCCCccccHHHHHHH
Q 015149 120 AYASSQR-----------------------------------------------EDTSGHFNVFVGDLSPEVTDATLFAC 152 (412)
Q Consensus 120 ~~~~~~~-----------------------------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~ 152 (412)
++.+... ....++..+++.|||..++.+.+..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 9743210 11345678999999999999999999
Q ss_pred hhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEcc
Q 015149 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG-NRQIRCNWAA 210 (412)
Q Consensus 153 f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~-g~~l~v~~~~ 210 (412)
|..|....+++++.. .++.|||+|.+...+..|...+.+..|. ...+.|.+++
T Consensus 167 f~qf~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhCcccceeEeccC-----CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999854 2678999999999999999999998875 6777777653
No 55
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.77 E-value=1.1e-17 Score=149.57 Aligned_cols=193 Identities=19% Similarity=0.275 Sum_probs=145.2
Q ss_pred CceEEECCCCccccHHHHHHHhh-cCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 132 HFNVFVGDLSPEVTDATLFACFS-VFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 132 ~~~l~v~nlp~~~~~~~l~~~f~-~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
.+.+||+|||+++.+.||+++|. +.|+|+.|.++.| .+|++||+|.|||+++|.+++|++.|+...+.||.|.|+-.+
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 45699999999999999999995 7799999999999 679999999999999999999999999999999999998766
Q ss_pred CCCCCCCccccCC---------------------------------ccccc---------ccccCCCCC---------CC
Q 015149 211 KGATSGDEKQSSD---------------------------------SKSVV---------ELTNGISDG---------QE 239 (412)
Q Consensus 211 ~~~~~~~~~~~~~---------------------------------~~~~~---------~~~~~~~~~---------~~ 239 (412)
..........-.. .+... .+...+... ..
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 5321110000000 00000 000000000 00
Q ss_pred CCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCe
Q 015149 240 KSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARI 314 (412)
Q Consensus 240 ~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~ 314 (412)
.......-..+-...+||.||.+.+....|++.|.-. |.|+.+.+.-| +|+|.++|+++-+|..|+..|++.-
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmA--Gkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMA--GKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccc--eeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCC
Confidence 0000011133445789999999999999999999998 99999988765 7999999999999999999999988
Q ss_pred eCCeeeEEEecCC
Q 015149 315 LCGKPIKCSWGSK 327 (412)
Q Consensus 315 l~g~~l~V~~a~~ 327 (412)
+.++++.+.+.+-
T Consensus 281 ~~~~~~~~Rl~~~ 293 (608)
T KOG4212|consen 281 LFDRRMTVRLDRI 293 (608)
T ss_pred Cccccceeecccc
Confidence 8889888887543
No 56
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=2e-17 Score=133.59 Aligned_cols=86 Identities=41% Similarity=0.621 Sum_probs=80.4
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
....++|||+|||+++++++|+++|++||.|.+++++.|+.+++++|||||+|.+.++|+.|++.+++..|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015149 209 AAKGAT 214 (412)
Q Consensus 209 ~~~~~~ 214 (412)
+..+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 876543
No 57
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.74 E-value=6.6e-17 Score=132.44 Aligned_cols=184 Identities=17% Similarity=0.269 Sum_probs=130.3
Q ss_pred CCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeec-CCCCCcccEEEEEecCHHHHHHHHHHhCCceeC---CeEEE
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD-QKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG---NRQIR 205 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d-~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~---g~~l~ 205 (412)
..-++|||.+||.++...||+.+|..|-..+.+.+... +.....+-+|||.|.+..+|..|+..|||..|+ +..|.
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34589999999999999999999999988887766644 333346789999999999999999999999984 78899
Q ss_pred EEEccCCCCCCCccccCCccccccccc-----------------CCCCC-----------------------------CC
Q 015149 206 CNWAAKGATSGDEKQSSDSKSVVELTN-----------------GISDG-----------------------------QE 239 (412)
Q Consensus 206 v~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~-----------------------------~~ 239 (412)
+++++...+..+............... +..+. ..
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 999876654443332221111000000 00000 00
Q ss_pred C------CCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc--ccEEEEEeCCHHHHHHHHHHcC
Q 015149 240 K------SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGN 311 (412)
Q Consensus 240 ~------~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~--kg~afV~f~~~~~A~~A~~~l~ 311 (412)
. ...........+.+|||.||..++||++|+.+|+.| .....++|.-. ...||++|++.+.|..|+..|.
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~--~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRY--PGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhC--CCceEEEEecCCCcceEeecHHHHHHHHHHHHHhh
Confidence 0 000011122346799999999999999999999999 44555555433 3468999999999999999999
Q ss_pred CCee
Q 015149 312 ARIL 315 (412)
Q Consensus 312 g~~l 315 (412)
|..|
T Consensus 270 g~~~ 273 (284)
T KOG1457|consen 270 GNLL 273 (284)
T ss_pred ccee
Confidence 9866
No 58
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.73 E-value=8.4e-17 Score=146.82 Aligned_cols=167 Identities=20% Similarity=0.297 Sum_probs=129.5
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
.....-|.+++||+++|++||.++|+.++ |+++. ..+.+|+..|-|||+|.+++++++|++ .+...+..|.|.|.-
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~--~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLE--IPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEE--EeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 34456689999999999999999999985 66644 445679999999999999999999999 788889999999987
Q ss_pred ccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEE-EEee
Q 015149 209 AAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED-VRVQ 287 (412)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~-v~i~ 287 (412)
+.......... ...+........|.+++||+.||++||.+||+.. -.|.. +.++
T Consensus 83 ~~~~e~d~~~~-----------------------~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL--~Iv~~gi~l~ 137 (510)
T KOG4211|consen 83 AGGAEADWVMR-----------------------PGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGL--EIVPDGILLP 137 (510)
T ss_pred cCCcccccccc-----------------------CCCCCCCCCCceEEecCCCccCcHHHHHHHhcCC--cccccceeee
Confidence 75543321111 1111111334789999999999999999999987 33333 3333
Q ss_pred cc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 288 RD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 288 ~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
.+ .|.|||+|++.+.|.+|+.. |...|+.|.|.|..+
T Consensus 138 ~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 138 MDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred ccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 33 68999999999999999987 888899999998644
No 59
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=1.6e-17 Score=139.23 Aligned_cols=165 Identities=25% Similarity=0.403 Sum_probs=131.7
Q ss_pred eEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 015149 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213 (412)
Q Consensus 134 ~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~ 213 (412)
.+||++||+.+.+.||.++|..||.+.++.+. -||+||+|.+..+|..|+..+++..+.|-.+.|+|+....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 59999999999999999999999999998877 5789999999999999999999999999889999987542
Q ss_pred CCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEE
Q 015149 214 TSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFG 293 (412)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~a 293 (412)
........ ++... ..............+.|.|+...+.+.+|.+.|+.+ |.+....+ .++++
T Consensus 75 ~~~g~~~~-------------g~r~~-~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~--g~~~~~~~--~~~~~ 136 (216)
T KOG0106|consen 75 RGRGRPRG-------------GDRRS-DSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA--GEVTYVDA--RRNFA 136 (216)
T ss_pred cccCCCCC-------------CCccc-hhhccCCcccccceeeeccchhhhhHHHHhhhhccc--CCCchhhh--hcccc
Confidence 22100000 00000 001111112233789999999999999999999999 88866655 56799
Q ss_pred EEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 294 FVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 294 fV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
||+|++.++|.+|+..|+|..+.|+.|.+..
T Consensus 137 ~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 137 FVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 9999999999999999999999999999943
No 60
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.71 E-value=4.8e-16 Score=127.44 Aligned_cols=154 Identities=21% Similarity=0.348 Sum_probs=121.6
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC-----CCEEEEEecCHHHHHHHHHHhCCCccC---Cc
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALAIVTLNGRHIF---GQ 113 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~-----~g~afV~f~~~~~A~~Al~~l~~~~~~---g~ 113 (412)
.....-|||||.+||.++...||..+|..|-..+.+.+....+ +.+|||.|.+..+|..|+..|||..|. +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 3456689999999999999999999999987667665544322 369999999999999999999999987 78
Q ss_pred eeEEEecccCCCCcC-----------------------------------------------------------------
Q 015149 114 PIKVNWAYASSQRED----------------------------------------------------------------- 128 (412)
Q Consensus 114 ~l~v~~~~~~~~~~~----------------------------------------------------------------- 128 (412)
.|+++.++....+..
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 899998762211000
Q ss_pred ------------------CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHH
Q 015149 129 ------------------TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSA 190 (412)
Q Consensus 129 ------------------~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~a 190 (412)
.....+|||.||.++++|++|+.+|+.|....-.+|.- ......||++|++.+.|..|
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDA 264 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHH
Confidence 00013499999999999999999999997765555541 12356799999999999999
Q ss_pred HHHhCCcee
Q 015149 191 INDLNGKWL 199 (412)
Q Consensus 191 i~~l~~~~~ 199 (412)
|..|+|..|
T Consensus 265 m~~lqg~~~ 273 (284)
T KOG1457|consen 265 MNHLQGNLL 273 (284)
T ss_pred HHHhhccee
Confidence 999998776
No 61
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.70 E-value=8.2e-16 Score=134.21 Aligned_cols=191 Identities=20% Similarity=0.258 Sum_probs=142.3
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeee--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSD--------ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~--------~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~ 202 (412)
-+..|||+|||.++|.+++.++|++||.|.. |++..+ ..|.-+|-|.|.|-..+++..|+..|++..+.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3567999999999999999999999998743 677777 4589999999999999999999999999999999
Q ss_pred EEEEEEccCCCCCCCccc------cCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCC----CCC-------
Q 015149 203 QIRCNWAAKGATSGDEKQ------SSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSS----EVT------- 265 (412)
Q Consensus 203 ~l~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~----~~t------- 265 (412)
.|+|+.+.-......... ....+.........-++... ...+......++|.|+|+-. ..+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd--~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPD--RDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCC--ccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 999998854332211100 11111111111111111111 13344445558999999843 223
Q ss_pred HHHHHHHHhhcCcccEEEEEee--ccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 266 SVDLHRHFHALCVGTIEDVRVQ--RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 266 ~~~L~~~F~~~~~G~v~~v~i~--~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
.++|++-+++| |.|..|.+. ...|.+.|.|.+.++|..+++.|+|+.|+||.|.-+.-.
T Consensus 290 kedl~eec~K~--G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 290 KEDLTEECEKF--GQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHHHh--CCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 46777889999 999999998 448999999999999999999999999999999876543
No 62
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=3.5e-17 Score=137.18 Aligned_cols=149 Identities=29% Similarity=0.484 Sum_probs=129.3
Q ss_pred EEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCCC---
Q 015149 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQ--- 125 (412)
Q Consensus 49 tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~~--- 125 (412)
.|||++||+.+.+.+|..||..||.|.+|.+ ..||+||+|.+..+|..|+..|++..+.|..+.|+|+.....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADM----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred ceeecccCCccchhHHHHHHhhcccccccee----ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 5999999999999999999999999998877 567999999999999999999999999998899999874210
Q ss_pred --------------CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 015149 126 --------------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191 (412)
Q Consensus 126 --------------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai 191 (412)
......+..+.+.+++..+.+.+|.+.|+++|.+....+ .++++||+|.+.+++.+|+
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~ 150 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRAL 150 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcc
Confidence 011234567999999999999999999999999854433 3678999999999999999
Q ss_pred HHhCCceeCCeEEEEEEc
Q 015149 192 NDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 192 ~~l~~~~~~g~~l~v~~~ 209 (412)
+.|++..+.++.|.+...
T Consensus 151 ~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 151 EKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhccchhhcCceeeeccc
Confidence 999999999999999443
No 63
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=3.5e-16 Score=126.28 Aligned_cols=78 Identities=27% Similarity=0.466 Sum_probs=72.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
..++|||+|||..+++++|+++|++| |.|.+|+++.| +|||||+|.+.++|.+|++.||+..|+|+.|+|.|
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHF--GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC--CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34789999999999999999999999 99999999865 79999999999999999999999999999999999
Q ss_pred cCCCCC
Q 015149 325 GSKPTP 330 (412)
Q Consensus 325 a~~~~~ 330 (412)
++++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 987654
No 64
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.63 E-value=2.2e-14 Score=125.39 Aligned_cols=165 Identities=24% Similarity=0.358 Sum_probs=131.9
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCCcc--------eEEEeecCC---CCEEEEEecCHHHHHHHHHHhCCCccCC
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLE--------GCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~--------~v~~~~~~~---~g~afV~f~~~~~A~~Al~~l~~~~~~g 112 (412)
+.-++.|||.|||.++|.+++.++|++||.|. .|++.++.. +|-|++.|--.+++..|+.-|++..+.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 45667799999999999999999999999654 456665542 6789999999999999999999999999
Q ss_pred ceeEEEecccC----------------------------------C-CCcCCCCCceEEECCCCc----ccc-------H
Q 015149 113 QPIKVNWAYAS----------------------------------S-QREDTSGHFNVFVGDLSP----EVT-------D 146 (412)
Q Consensus 113 ~~l~v~~~~~~----------------------------------~-~~~~~~~~~~l~v~nlp~----~~~-------~ 146 (412)
+.|+|+.+.-. . ........++|.+.|+=. ..+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 99999987510 0 011223356788888721 122 3
Q ss_pred HHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 147 ~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
+||++-.++||.|..|.+. | ..+.|.+-|.|.+.++|..||+.|+|..++||.|.......+
T Consensus 291 edl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 5677788999999998776 3 356899999999999999999999999999999998876544
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.2e-15 Score=125.46 Aligned_cols=85 Identities=32% Similarity=0.518 Sum_probs=81.0
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
...++.+|.|.||+.+++|+||+++|.+||.|..+.+.+|++||.+||||||.|.+.++|.+||..|+|.-+++-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 44577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCC
Q 015149 208 WAAKG 212 (412)
Q Consensus 208 ~~~~~ 212 (412)
|+++.
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99764
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.59 E-value=9e-15 Score=103.72 Aligned_cols=70 Identities=41% Similarity=0.798 Sum_probs=67.1
Q ss_pred EEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 135 l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
|||+|||+++++++|+++|+.||.|..+.+..+ .++..+++|||+|.+.++|+.|++.++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 7789999999999999999999999999999999875
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=1.6e-14 Score=125.38 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=73.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
..++|+|+|||+...+-||+.+|++| |+|.+|.|+-+ ||||||+|++.+||.+|.++|||..+.||+|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kf--G~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKF--GKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhh--CceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 44899999999999999999999999 99999999865 8999999999999999999999999999999999988
Q ss_pred CCCC
Q 015149 327 KPTP 330 (412)
Q Consensus 327 ~~~~ 330 (412)
.+..
T Consensus 173 arV~ 176 (376)
T KOG0125|consen 173 ARVH 176 (376)
T ss_pred hhhc
Confidence 7653
No 68
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=5e-15 Score=123.04 Aligned_cols=79 Identities=38% Similarity=0.596 Sum_probs=73.6
Q ss_pred ceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
.+|||+||++.+..++|+++|++||+|++..++.|+.+|++|||+||+|++.+.|.+|++ -.+-.|+||+..++.+...
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~lg 91 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASLG 91 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhhc
Confidence 579999999999999999999999999999999999999999999999999999999998 4556789999999988654
No 69
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=1.7e-14 Score=103.66 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=78.6
Q ss_pred CCCCCCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC-CCCEEEEEecCHHHHHHHHHHhCCCccCCce
Q 015149 36 GNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-KSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (412)
Q Consensus 36 ~~~~~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~-~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~ 114 (412)
...+...++..++.|||+|||+++|.++..++|.+||+|..|++-..+ .+|.|||.|++..+|.+|++.|+|..+.++.
T Consensus 7 ~~~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ry 86 (124)
T KOG0114|consen 7 KKQNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRY 86 (124)
T ss_pred ccCCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCce
Confidence 344556677888999999999999999999999999999999996654 5899999999999999999999999999999
Q ss_pred eEEEecccC
Q 015149 115 IKVNWAYAS 123 (412)
Q Consensus 115 l~v~~~~~~ 123 (412)
+.|.+..+.
T Consensus 87 l~vlyyq~~ 95 (124)
T KOG0114|consen 87 LVVLYYQPE 95 (124)
T ss_pred EEEEecCHH
Confidence 999987644
No 70
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.1e-14 Score=115.29 Aligned_cols=79 Identities=30% Similarity=0.533 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCCC
Q 015149 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQ 125 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~~ 125 (412)
-.++|||+||+..+++.||+..|..||+|.+|+|-. ...|||||+|+++.||..|+..|+|..|+|..|+|+.++....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 367899999999999999999999999999999877 4678999999999999999999999999999999999986553
No 71
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=1.5e-14 Score=102.52 Aligned_cols=65 Identities=35% Similarity=0.709 Sum_probs=62.4
Q ss_pred EEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeE
Q 015149 255 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 321 (412)
Q Consensus 255 l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~ 321 (412)
|||+|||.++|+++|+++|+.| |.|..+.+..+ +++|||+|.+.++|.+|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF--GKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT--STEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHh--hhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999 99999999885 79999999999999999999999999999986
No 72
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.56 E-value=3.2e-14 Score=122.72 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=70.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc---ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
++|||+||++.+|+++|+++|+.| |.|++|+|.++ +|||||+|.+.++|..|+. |||..|.|+.|+|.++....
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~--G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFS--GDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 799999999999999999999999 99999999887 6999999999999999995 89999999999999987654
Q ss_pred C
Q 015149 330 P 330 (412)
Q Consensus 330 ~ 330 (412)
.
T Consensus 82 ~ 82 (260)
T PLN03120 82 L 82 (260)
T ss_pred C
Confidence 4
No 73
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.8e-14 Score=125.01 Aligned_cols=102 Identities=28% Similarity=0.448 Sum_probs=84.6
Q ss_pred CCCccCCceeEEEecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHH
Q 015149 106 NGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQE 185 (412)
Q Consensus 106 ~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~ 185 (412)
++....|..+.+..+ ......+..++|+|+|||+...+-||+.+|++||.|.+|.|+++. ..+|||+||+|++.+
T Consensus 73 ~~~~t~g~~~~~~~s---t~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~ 147 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPS---TNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPA 147 (376)
T ss_pred CCCCCCCCccccCCC---CcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChh
Confidence 344455555544433 233344556789999999999999999999999999999999873 368999999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 186 DAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 186 ~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
||++|.++|+|..+.||+|.|..+...
T Consensus 148 dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 148 DADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred hHHHHHHHhhcceeeceEEEEeccchh
Confidence 999999999999999999999998765
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=5.1e-14 Score=99.76 Aligned_cols=70 Identities=39% Similarity=0.705 Sum_probs=64.9
Q ss_pred EEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 135 l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
|+|+|||+++++++|+++|+.||.|..+.+..++. +..+|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 89999999999999999999999999999999874
No 75
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=7e-14 Score=120.61 Aligned_cols=76 Identities=26% Similarity=0.392 Sum_probs=71.2
Q ss_pred CCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC-CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccC
Q 015149 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (412)
Q Consensus 47 ~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~-~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~ 123 (412)
.++|||+|||+++++++|+++|+.||+|.+|.|.+++ .+|||||+|.+.++|..|| .|+|..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccCC
Confidence 5789999999999999999999999999999999886 5789999999999999999 69999999999999998643
No 76
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=9.8e-14 Score=115.78 Aligned_cols=79 Identities=28% Similarity=0.444 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC----CCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~----~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
++..+|.|.||+.+++|++|+++|.+||+|.+|.+.+++. +|||||.|.+.++|.+||..|||.-+.+--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4677899999999999999999999999999999999874 789999999999999999999999999999999999
Q ss_pred ccC
Q 015149 121 YAS 123 (412)
Q Consensus 121 ~~~ 123 (412)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 77
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=1.7e-15 Score=120.30 Aligned_cols=88 Identities=26% Similarity=0.516 Sum_probs=80.6
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
+-.++..|||+|||+.++|.||.-+|+.||+|.+|.+++|+.||+++||||+.|++..+...|++.+||..|.||.|+|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EccCCCCC
Q 015149 208 WAAKGATS 215 (412)
Q Consensus 208 ~~~~~~~~ 215 (412)
.......+
T Consensus 111 Hv~~Yk~p 118 (219)
T KOG0126|consen 111 HVSNYKKP 118 (219)
T ss_pred ecccccCC
Confidence 76544433
No 78
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.1e-13 Score=99.47 Aligned_cols=71 Identities=23% Similarity=0.311 Sum_probs=67.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc---ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
+.|||+|||+++|.|+..++|.+| |.|..|++.-. +|.|||.|++..+|++|+..|+|..+.++.|.|-|-
T Consensus 19 riLyirNLp~~ITseemydlFGky--g~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFGKY--GTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred eeEEEecCCccccHHHHHHHhhcc--cceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 789999999999999999999999 99999999765 799999999999999999999999999999999874
No 79
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.50 E-value=4e-13 Score=123.01 Aligned_cols=145 Identities=29% Similarity=0.428 Sum_probs=113.3
Q ss_pred CceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 015149 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (412)
Q Consensus 132 ~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 211 (412)
..+|||+|||+.+++++|+++|..||.|..+.+..|+.++.++|+|||+|.+.++|..|+..+++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999998999999999999999999999999999999999999999754
Q ss_pred -CCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc
Q 015149 212 -GATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD 289 (412)
Q Consensus 212 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~ 289 (412)
.......... ......................+++.+++..++..++...|..+ |.+....+...
T Consensus 195 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNN-----------LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR--GDIVRASLPPS 260 (306)
T ss_pred ccccccccccc-----------cchhhhccccccccccccccceeeccccccccchhHHHHhcccc--ccceeeeccCC
Confidence 1000000000 00000000012222333455789999999999999999999999 88877776654
No 80
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.50 E-value=3.3e-14 Score=132.97 Aligned_cols=82 Identities=34% Similarity=0.644 Sum_probs=79.2
Q ss_pred ceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
+.|||+|||+++++++|.++|+..|.|.+++++.|+.||+.+||+|++|.+.++|.+|++.|+|.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CC
Q 015149 213 AT 214 (412)
Q Consensus 213 ~~ 214 (412)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 81
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.5e-13 Score=117.94 Aligned_cols=86 Identities=21% Similarity=0.388 Sum_probs=80.3
Q ss_pred CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
....++-++|||+-|+++++|.+|+..|+.||+|+.++|+.|+.||+++|||||+|+++.+...|.+..+|..|+|+.|.
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 34446678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccC
Q 015149 206 CNWAAK 211 (412)
Q Consensus 206 v~~~~~ 211 (412)
|.+-..
T Consensus 175 VDvERg 180 (335)
T KOG0113|consen 175 VDVERG 180 (335)
T ss_pred EEeccc
Confidence 988643
No 82
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=7.8e-14 Score=104.39 Aligned_cols=82 Identities=28% Similarity=0.448 Sum_probs=77.2
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
.+.+|||+||+..++|+.|.++|+++|+|..|.|=.|+.+..+=|||||+|-+.++|..|++.++++.++.+.|.+.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CC
Q 015149 211 KG 212 (412)
Q Consensus 211 ~~ 212 (412)
.-
T Consensus 115 GF 116 (153)
T KOG0121|consen 115 GF 116 (153)
T ss_pred cc
Confidence 43
No 83
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.49 E-value=1.8e-13 Score=96.98 Aligned_cols=65 Identities=32% Similarity=0.672 Sum_probs=60.2
Q ss_pred EEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeE
Q 015149 255 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 321 (412)
Q Consensus 255 l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~ 321 (412)
|+|+|||..+++++|+++|+.| |.|..+++.++ +|+|||+|.+.++|.+|++.++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~--g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF--GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS--SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhc--CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999 99999999987 69999999999999999999999999999985
No 84
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.5e-13 Score=102.92 Aligned_cols=74 Identities=32% Similarity=0.492 Sum_probs=69.3
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
.+++|||+||.+.++||.|.++|+++ |+|..|.+..| .|||||+|.+.++|..|++.++|..|+.++|++.|
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~c--G~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKC--GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhc--cchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34899999999999999999999999 99999998766 49999999999999999999999999999999998
Q ss_pred cC
Q 015149 325 GS 326 (412)
Q Consensus 325 a~ 326 (412)
.-
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 64
No 85
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=2e-13 Score=108.22 Aligned_cols=76 Identities=33% Similarity=0.584 Sum_probs=71.1
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCC
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 330 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~ 330 (412)
++|||+||+..+++.||..+|..| |.|..|-|.+. .|||||+|+++.+|..|+..|+|..|+|..|+|++.+-...
T Consensus 11 ~kVYVGnL~~~a~k~eLE~~F~~y--G~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 11 TKVYVGNLGSRATKRELERAFSKY--GPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred ceEEeccCCCCcchHHHHHHHHhc--CcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 789999999999999999999999 99999988876 79999999999999999999999999999999999875543
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.45 E-value=1.7e-13 Score=111.24 Aligned_cols=86 Identities=29% Similarity=0.492 Sum_probs=80.3
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
+.+.-..|.|-||-+.++.++|+.+|++||.|.+|.|.+|+.|+.++|||||.|-+..+|+.|++.|+|.+++|+.|.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EccCCC
Q 015149 208 WAAKGA 213 (412)
Q Consensus 208 ~~~~~~ 213 (412)
++.-..
T Consensus 89 ~arygr 94 (256)
T KOG4207|consen 89 MARYGR 94 (256)
T ss_pred hhhcCC
Confidence 876543
No 87
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.44 E-value=8.2e-13 Score=125.16 Aligned_cols=179 Identities=14% Similarity=0.026 Sum_probs=130.9
Q ss_pred CCCCcCCCCCCCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeec---C-CCCEEEEEecCHHHHHHHHHHh
Q 015149 30 IEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---D-KSSYGFVDYFDRRSAALAIVTL 105 (412)
Q Consensus 30 ~~~~~s~~~~~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~---~-~~g~afV~f~~~~~A~~Al~~l 105 (412)
+.-..|+..++....+ .+.+-+.+++.+.++.|+++||... .|..+.+..+ + ..|-++|.|....++.+|+ ..
T Consensus 295 ~~ns~sggstpqvv~d-~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~-~r 371 (944)
T KOG4307|consen 295 YNNSYSGGSTPQVVSD-KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAF-TR 371 (944)
T ss_pred ccCCCCCCCCCcccch-hheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHH-hc
Confidence 3334444444444333 3458889999999999999999853 2444444333 2 3689999999999999998 67
Q ss_pred CCCccCCceeEEEecccCC------------------------------------CCcCCCCCceEEECCCCccccHHHH
Q 015149 106 NGRHIFGQPIKVNWAYASS------------------------------------QREDTSGHFNVFVGDLSPEVTDATL 149 (412)
Q Consensus 106 ~~~~~~g~~l~v~~~~~~~------------------------------------~~~~~~~~~~l~v~nlp~~~~~~~l 149 (412)
|...+..|.+.+....... .+........|||..||..+++.++
T Consensus 372 n~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~ 451 (944)
T KOG4307|consen 372 NPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPP 451 (944)
T ss_pred CchhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccch
Confidence 7777777877776543110 0111223467999999999999999
Q ss_pred HHHhhcCCCeee-EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 150 FACFSVFPTCSD-ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 150 ~~~f~~~G~v~~-~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
.++|...-.|++ |.+-+. -+++-++.|||+|.+++++..|...-+.+.++.+.|+|+....+
T Consensus 452 v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 452 VNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred hhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 999999888887 444433 56788999999999999999998877777788888999866443
No 88
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=2e-12 Score=120.41 Aligned_cols=160 Identities=23% Similarity=0.213 Sum_probs=112.7
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccC
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~ 123 (412)
..+.++|+|-|||.++++++|+.+|+.||+|+.|+..+. +++.+||+|.|..+|+.|++.|++..|.|+.|+-......
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 456688999999999999999999999999999776554 5789999999999999999999999999988871111100
Q ss_pred C-------------------CCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCH
Q 015149 124 S-------------------QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQ 184 (412)
Q Consensus 124 ~-------------------~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~ 184 (412)
. .....-....+++- |++..+..-++..|..+|.+.. + .++.-+..-|++|.+.
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~-----~~~~~~hq~~~~~~~~ 223 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-R-----ETPLLNHQRFVEFADN 223 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-c-----cccchhhhhhhhhccc
Confidence 0 00011111223333 8888888666677777777654 2 2233333678888888
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 185 EDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 185 ~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
.++..+.... |..+.+....+.++.+.
T Consensus 224 ~s~a~~~~~~-G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 224 RSYAFSEPRG-GFLISNSSGVITFSGPG 250 (549)
T ss_pred cchhhcccCC-ceecCCCCceEEecCCC
Confidence 8886666533 67777766666666543
No 89
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=2.5e-13 Score=102.59 Aligned_cols=84 Identities=23% Similarity=0.457 Sum_probs=79.2
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
......|||.++....++++|.+.|..||+|..+.+..|+.||-.||||+|+|++.++|..|++.+||..+.|+.|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34457799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 015149 209 AAKG 212 (412)
Q Consensus 209 ~~~~ 212 (412)
+-.+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 8654
No 90
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.44 E-value=3e-12 Score=121.44 Aligned_cols=186 Identities=13% Similarity=0.021 Sum_probs=124.8
Q ss_pred EEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 015149 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGAT 214 (412)
Q Consensus 135 l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~ 214 (412)
+-+.+++++.++.|++++|... .+....+..+...+...|.++|+|....++.+|+. -+...+-.|.+.+........
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~~~ 391 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNLGR 391 (944)
T ss_pred eeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCcccc
Confidence 6678999999999999998653 35556666665555558899999999999999988 455556667776654432211
Q ss_pred CCCccccC-----CcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEE-EEeec
Q 015149 215 SGDEKQSS-----DSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED-VRVQR 288 (412)
Q Consensus 215 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~-v~i~~ 288 (412)
........ .......................+.......+|||..||..+++.++.++|... -.|++ |.|.+
T Consensus 392 ~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~--~~Ved~I~lt~ 469 (944)
T KOG4307|consen 392 NGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGA--AAVEDFIELTR 469 (944)
T ss_pred ccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhh--hhhhheeEecc
Confidence 11100000 000000011111111111222233455567899999999999999999999987 67777 54443
Q ss_pred c-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 289 D-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 289 ~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
. ++.|||.|.+++++.+|...-+.+-++.|.|+|.-
T Consensus 470 ~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 470 LPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 2 68899999999999999887777888999999963
No 91
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=6.2e-13 Score=121.40 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCH--HHHHHHHHHhCCCccCCceeEEEeccc
Q 015149 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDR--RSAALAIVTLNGRHIFGQPIKVNWAYA 122 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~--~~A~~Al~~l~~~~~~g~~l~v~~~~~ 122 (412)
...+|||+||+++++++||+..|+.||.|.+|.|++...+|||||+|.+. .++.+||..|||..|.|+.|+|..+++
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34679999999999999999999999999999999888899999999987 789999999999999999999998874
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2e-13 Score=111.83 Aligned_cols=87 Identities=36% Similarity=0.539 Sum_probs=82.0
Q ss_pred CCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
...++|||++|...++|.-|...|=+||.|.+|.+..|.++.++|||+||+|...|+|..||+.+|+.++.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 015149 210 AKGATSG 216 (412)
Q Consensus 210 ~~~~~~~ 216 (412)
.+.....
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 8876544
No 93
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.42 E-value=3.1e-13 Score=109.81 Aligned_cols=78 Identities=29% Similarity=0.523 Sum_probs=72.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
...+|.|.||.+.++.++|+.+|++| |.|-+|.|.+| +|||||.|.+..+|..|++.|+|.+|+|+.|+|.+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekY--G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKY--GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHh--CcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 44789999999999999999999999 99999999988 79999999999999999999999999999999998
Q ss_pred cCCCCC
Q 015149 325 GSKPTP 330 (412)
Q Consensus 325 a~~~~~ 330 (412)
|+-..+
T Consensus 90 arygr~ 95 (256)
T KOG4207|consen 90 ARYGRP 95 (256)
T ss_pred hhcCCC
Confidence 875443
No 94
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.42 E-value=2.9e-12 Score=117.31 Aligned_cols=146 Identities=25% Similarity=0.375 Sum_probs=113.5
Q ss_pred CCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc-
Q 015149 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY- 121 (412)
Q Consensus 47 ~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~- 121 (412)
.++|||+|||+++++++|+++|..||.|..+.+..++ .+|+|||.|.+.++|..|+..+++..|.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6899999999999999999999999999999998874 47899999999999999999999999999999999953
Q ss_pred ---cCCCCc-----------------CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEe
Q 015149 122 ---ASSQRE-----------------DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSF 181 (412)
Q Consensus 122 ---~~~~~~-----------------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f 181 (412)
...... .......+++.+++..+...++...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 222111 112345699999999999999999999999996666654433333333344444
Q ss_pred cCHHHHHHHHH
Q 015149 182 RNQEDAQSAIN 192 (412)
Q Consensus 182 ~~~~~A~~ai~ 192 (412)
.....+.....
T Consensus 275 ~~~~~~~~~~~ 285 (306)
T COG0724 275 EASKDALESNS 285 (306)
T ss_pred hHHHhhhhhhc
Confidence 44444444433
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=1.8e-12 Score=109.98 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=68.3
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc---ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCC
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~ 328 (412)
..+|||+||++.+|+++|+++|+.| |+|.+|+|.+| +++|||+|.++++|..|+ .|+|..|.|++|.|......
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~--G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHC--GAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhc--CCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCccc
Confidence 4899999999999999999999999 99999999988 579999999999999999 58999999999999876543
No 96
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=8.7e-13 Score=120.43 Aligned_cols=75 Identities=20% Similarity=0.331 Sum_probs=70.4
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc--ccEEEEEeCCH--HHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTH--PEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~--kg~afV~f~~~--~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
...+|||+||++.++++||+.+|..| |.|.+|.|++. ||||||+|.+. .++.+|+..|||.++.|+.|+|.-|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeF--GsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPM--GTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 34789999999999999999999999 99999999987 89999999987 68999999999999999999999887
Q ss_pred C
Q 015149 327 K 327 (412)
Q Consensus 327 ~ 327 (412)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 5
No 97
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=3.1e-12 Score=120.45 Aligned_cols=167 Identities=21% Similarity=0.360 Sum_probs=130.8
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
.....++|++||..++++.++++...||++....++++. ++||||.+|.++.....|+..|||..+.++.|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 445669999999999999999999999999999998875 4789999999999999999999999999999999987
Q ss_pred ccCCCCcC---------------------CCCCceEEECCCC--ccc-cH-------HHHHHHhhcCCCeeeEEEeecC-
Q 015149 121 YASSQRED---------------------TSGHFNVFVGDLS--PEV-TD-------ATLFACFSVFPTCSDARVMWDQ- 168 (412)
Q Consensus 121 ~~~~~~~~---------------------~~~~~~l~v~nlp--~~~-~~-------~~l~~~f~~~G~v~~~~~~~d~- 168 (412)
........ ......|.+.|+= .++ .+ ++++.-+++||.|..|.+..+.
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 64332111 1112223333321 111 11 3556667899999999887662
Q ss_pred --CCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 015149 169 --KTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (412)
Q Consensus 169 --~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 211 (412)
......|..||+|.+.+++++|++.|+|..+.||.+...|-..
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 2234578899999999999999999999999999999988653
No 98
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=2.5e-12 Score=91.18 Aligned_cols=68 Identities=38% Similarity=0.719 Sum_probs=64.4
Q ss_pred eEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccc----cEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 254 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK----GFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 254 ~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~k----g~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
+|+|+|||..+++++|+++|+.| |.|.++.+..++ |+|||+|.+.++|.+|++.++|..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~--g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF--GPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc--CCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999 999999999876 999999999999999999999999999999873
No 99
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.39 E-value=2.3e-12 Score=86.62 Aligned_cols=55 Identities=31% Similarity=0.652 Sum_probs=51.9
Q ss_pred HHHHHhhcCcccEEEEEeeccc-cEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 269 LHRHFHALCVGTIEDVRVQRDK-GFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 269 L~~~F~~~~~G~v~~v~i~~~k-g~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
|+++|++| |+|+++.+.+++ ++|||+|.+.++|.+|++.|||..++|++|+|.|+
T Consensus 1 L~~~f~~f--G~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKF--GEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTT--S-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCc--ccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999 999999999987 99999999999999999999999999999999985
No 100
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.39 E-value=3.1e-12 Score=108.59 Aligned_cols=78 Identities=17% Similarity=0.296 Sum_probs=70.9
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
..++|+|+||++.+++++|+++|+.||.|.+|+|+.|. ..+++|||+|.+.++++.|+. |+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45789999999999999999999999999999999874 556899999999999999997 99999999999998765
Q ss_pred CC
Q 015149 211 KG 212 (412)
Q Consensus 211 ~~ 212 (412)
..
T Consensus 80 ~y 81 (243)
T PLN03121 80 QY 81 (243)
T ss_pred cc
Confidence 43
No 101
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=3.5e-12 Score=90.43 Aligned_cols=71 Identities=44% Similarity=0.769 Sum_probs=66.6
Q ss_pred eEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 134 ~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
+|+|+|||..+++++|+++|+.||.|..+.+..++ +.++|+|||+|.+.++|..|++.+++..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 48999999999999999999999999999998775 778999999999999999999999999999999876
No 102
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.37 E-value=2.7e-12 Score=113.70 Aligned_cols=163 Identities=20% Similarity=0.206 Sum_probs=122.2
Q ss_pred CCEEEEcCCCccCCHHHHHHHhhc---c-CCcceEEEeec---CCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEe
Q 015149 47 CRSVYVGNIHPQVTNALLQEVFSS---T-GPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (412)
Q Consensus 47 ~~tl~V~nLp~~~t~~~L~~~f~~---~-G~i~~v~~~~~---~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~ 119 (412)
.-.|.+++||+++++.|+.+||.. . |..+.|.+++. +-.|-|||.|..+++|..|+. .|...++-|.|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHH
Confidence 445899999999999999999963 2 24556666654 346899999999999999994 444444444444332
Q ss_pred cc----------------------------cCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCC-ee--eEEEeecC
Q 015149 120 AY----------------------------ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPT-CS--DARVMWDQ 168 (412)
Q Consensus 120 ~~----------------------------~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-v~--~~~~~~d~ 168 (412)
+. +...-.......+|.+++||+..+.+||.++|..|.. |. .|++..+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N- 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN- 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-
Confidence 22 0111122233568999999999999999999998853 22 3677766
Q ss_pred CCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 015149 169 KTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (412)
Q Consensus 169 ~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 211 (412)
.-|+..|.|||+|.+.|+|..|....+++...+|.|.|..+..
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 5589999999999999999999999998888899999877643
No 103
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=5.1e-13 Score=109.47 Aligned_cols=86 Identities=35% Similarity=0.545 Sum_probs=78.6
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
.++|||++|..++++.-|...|=+| |.|.+|.++.| ||||||+|.-.|+|..|+..||+.+|.||.|+|.|+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPF--GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPF--GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccc--cchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3899999999999999999999999 99999999876 899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCC
Q 015149 326 SKPTPPGTSSTPLP 339 (412)
Q Consensus 326 ~~~~~~~~~~~~~~ 339 (412)
++......+..|..
T Consensus 88 kP~kikegsqkPvW 101 (298)
T KOG0111|consen 88 KPEKIKEGSQKPVW 101 (298)
T ss_pred CCccccCCCCCCcc
Confidence 98876655555443
No 104
>smart00360 RRM RNA recognition motif.
Probab=99.36 E-value=4.2e-12 Score=89.71 Aligned_cols=70 Identities=43% Similarity=0.753 Sum_probs=66.4
Q ss_pred ECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 137 VGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 137 v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|++.+++..+.|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5799999999999999999999999999988878899999999999999999999999999999999876
No 105
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=3e-12 Score=96.77 Aligned_cols=82 Identities=28% Similarity=0.481 Sum_probs=74.4
Q ss_pred CCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeee
Q 015149 247 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPI 320 (412)
Q Consensus 247 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l 320 (412)
......+.|||.++....++++|.+.|..| |+|+.+.+-.| ||||+|+|.+.++|..|+..|||..|-|..|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dy--GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADY--GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhc--ccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 334455899999999999999999999999 99999998766 7999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q 015149 321 KCSWGSKPTP 330 (412)
Q Consensus 321 ~V~~a~~~~~ 330 (412)
.|.|+-.+.+
T Consensus 145 ~VDw~Fv~gp 154 (170)
T KOG0130|consen 145 SVDWCFVKGP 154 (170)
T ss_pred eEEEEEecCC
Confidence 9999865554
No 106
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=1e-11 Score=106.82 Aligned_cols=81 Identities=25% Similarity=0.456 Sum_probs=75.4
Q ss_pred CCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeee
Q 015149 247 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPI 320 (412)
Q Consensus 247 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l 320 (412)
..+.+.+||||.-|+++++|.+|+..|+.| |.|+.|+|++| +|||||+|.++.+...|.+..+|..|+|+.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~Y--G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKY--GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhc--CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 344678999999999999999999999999 99999999988 7999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 015149 321 KCSWGSKPT 329 (412)
Q Consensus 321 ~V~~a~~~~ 329 (412)
.|.+-+..+
T Consensus 174 ~VDvERgRT 182 (335)
T KOG0113|consen 174 LVDVERGRT 182 (335)
T ss_pred EEEeccccc
Confidence 999877655
No 107
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=5.5e-12 Score=105.09 Aligned_cols=75 Identities=31% Similarity=0.533 Sum_probs=67.4
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
....+|||++|+.++..|+|+++|++| |+|.++.++.| ||||||+|.+.+.|.+|++- -.-.|+||+-.|.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqf--GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQF--GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHh--CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 345789999999999999999999999 99999999876 79999999999999999985 5568999999998
Q ss_pred ecCC
Q 015149 324 WGSK 327 (412)
Q Consensus 324 ~a~~ 327 (412)
+|.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 7754
No 108
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.32 E-value=7e-12 Score=84.25 Aligned_cols=56 Identities=38% Similarity=0.653 Sum_probs=51.3
Q ss_pred HHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 64 LQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 64 L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
|+++|++||+|.++.+.+++ +++|||+|.+.++|.+|++.||+..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999987765 689999999999999999999999999999999985
No 109
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=2.5e-13 Score=131.89 Aligned_cols=228 Identities=19% Similarity=0.214 Sum_probs=185.1
Q ss_pred CCCEEEEcCCCccCCHH-HHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 46 TCRSVYVGNIHPQVTNA-LLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~-~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
..+...+.++-+...+. ..+..|..+|.|+.|++...+ ...+.++.+....++..+. ...+..+.++...|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCC
Confidence 34557777777776665 678899999999998886632 2348899999999999998 67778888888888877
Q ss_pred ccCCCCcCC-------CCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 015149 121 YASSQREDT-------SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193 (412)
Q Consensus 121 ~~~~~~~~~-------~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~ 193 (412)
+++...... ....++|++||+..+.+.||...|..+|.+..+++......++.||+|||+|.+.+++.+|+..
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 665532222 1224699999999999999999999999998887775667789999999999999999999995
Q ss_pred hCCceeCCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHH
Q 015149 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 273 (412)
Q Consensus 194 l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F 273 (412)
..++.++ + ..|+|+|+|+..|.+.|+.+|
T Consensus 729 ~d~~~~g-K--------------------------------------------------~~v~i~g~pf~gt~e~~k~l~ 757 (881)
T KOG0128|consen 729 RDSCFFG-K--------------------------------------------------ISVAISGPPFQGTKEELKSLA 757 (881)
T ss_pred hhhhhhh-h--------------------------------------------------hhhheeCCCCCCchHHHHhhc
Confidence 5444433 1 468999999999999999999
Q ss_pred hhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCC
Q 015149 274 HALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327 (412)
Q Consensus 274 ~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~ 327 (412)
.++ |.+.+++++.. +|.++|.|.++.++.+++...++..+.-+.+.|....+
T Consensus 758 ~~~--gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 758 SKT--GNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred ccc--CCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 999 99999987644 79999999999999999998888888777777766544
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=8.4e-11 Score=108.84 Aligned_cols=167 Identities=20% Similarity=0.264 Sum_probs=115.7
Q ss_pred CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEee-cC--CCCCccc---EEEEEecCHHHHHHHHHHhCCcee
Q 015149 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMW-DQ--KTGRSRG---FGFVSFRNQEDAQSAINDLNGKWL 199 (412)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~-d~--~~~~~~g---~afV~f~~~~~A~~ai~~l~~~~~ 199 (412)
......+++|||++||++++|+.|...|..||.+.- .... .. .--.++| |+|+.|+++..+..-+..+..
T Consensus 253 ~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~--- 328 (520)
T KOG0129|consen 253 YRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE--- 328 (520)
T ss_pred CCccccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---
Confidence 344456788999999999999999999999998742 2221 11 1113567 999999999999988876643
Q ss_pred CCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHh-hcCc
Q 015149 200 GNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH-ALCV 278 (412)
Q Consensus 200 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~-~~~~ 278 (412)
+...+.++.+.+........ .......+.... .+......+.+||||++||..++.++|-.+|+ .|
T Consensus 329 ~~~~~yf~vss~~~k~k~VQ----------IrPW~laDs~fv-~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~ly-- 395 (520)
T KOG0129|consen 329 GEGNYYFKVSSPTIKDKEVQ----------IRPWVLADSDFV-LDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLF-- 395 (520)
T ss_pred cccceEEEEecCccccccee----------EEeeEeccchhh-hccCcccCccceEEecCCCCcchHHHHHHHHHHhc--
Confidence 44444444443332221100 000000000000 11333445669999999999999999999999 77
Q ss_pred ccEEEEEeecc------ccEEEEEeCCHHHHHHHHHH
Q 015149 279 GTIEDVRVQRD------KGFGFVRYSTHPEAALAIQM 309 (412)
Q Consensus 279 G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~ 309 (412)
|.|..+.|..| ||-|-|+|.+...-.+||..
T Consensus 396 GgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 396 GGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99999999887 79999999999999999984
No 111
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=3.3e-11 Score=85.90 Aligned_cols=74 Identities=43% Similarity=0.800 Sum_probs=68.3
Q ss_pred eEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 134 ~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
+|+|+|||..+++++|+++|+.+|.|..+.+..++.+ .++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987544 6799999999999999999999999999999998864
No 112
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=3e-11 Score=86.07 Aligned_cols=69 Identities=39% Similarity=0.747 Sum_probs=65.2
Q ss_pred eEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 254 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 254 ~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
+|+|+|||..+++++|+++|+.+ |.|..+.+..+ +|+|||+|.+.++|..|++.+++..+.|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~--g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF--GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc--CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999 99999999876 68999999999999999999999999999999875
No 113
>smart00360 RRM RNA recognition motif.
Probab=99.27 E-value=1.8e-11 Score=86.37 Aligned_cols=67 Identities=36% Similarity=0.701 Sum_probs=61.7
Q ss_pred EcCCCccCCHHHHHHHhhccCCcceEEEeecCC----CCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 52 VGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 52 V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~----~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
|+|||..+++++|+++|+.||+|..+.+..++. +++|||+|.+.++|..|+..+++..+.|+.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 679999999999999999999999999988654 6899999999999999999999999999988773
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=99.26 E-value=3.5e-11 Score=84.77 Aligned_cols=61 Identities=30% Similarity=0.516 Sum_probs=55.6
Q ss_pred HHHHHHHhh----cCCCeeeEE-EeecCCC--CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 146 DATLFACFS----VFPTCSDAR-VMWDQKT--GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 146 ~~~l~~~f~----~~G~v~~~~-~~~d~~~--~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
+++|+++|+ +||.|.++. +..++.+ +.++|++||+|.+.++|..|+..|+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 7777766 899999999999999999999999999999999876
No 115
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2e-10 Score=106.31 Aligned_cols=149 Identities=22% Similarity=0.278 Sum_probs=116.4
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeec-------CCCC---EEEEEecCHHHHHHHHHHhCC----C
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK-------DKSS---YGFVDYFDRRSAALAIVTLNG----R 108 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~-------~~~g---~afV~f~~~~~A~~Al~~l~~----~ 108 (412)
...-+++|||++||++++|+.|...|..||.+. |.+..+ ..+| |+|+-|+++.....-+..+.. .
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNY 333 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccce
Confidence 345568899999999999999999999999765 344321 1245 999999999988887765432 1
Q ss_pred c-------cCCceeEEEecccC------CCCcCCCCCceEEECCCCccccHHHHHHHhh-cCCCeeeEEEeecCCCCCcc
Q 015149 109 H-------IFGQPIKVNWAYAS------SQREDTSGHFNVFVGDLSPEVTDATLFACFS-VFPTCSDARVMWDQKTGRSR 174 (412)
Q Consensus 109 ~-------~~g~~l~v~~~~~~------~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~G~v~~~~~~~d~~~~~~~ 174 (412)
. +..+.+.|...... ......+..++|||++||.-++.++|..+|+ -||.|..+-|-.|++-+..+
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 1 12233444322211 1234557789999999999999999999998 89999999999998889999
Q ss_pred cEEEEEecCHHHHHHHHH
Q 015149 175 GFGFVSFRNQEDAQSAIN 192 (412)
Q Consensus 175 g~afV~f~~~~~A~~ai~ 192 (412)
|-|=|+|.+...-.+||.
T Consensus 414 GaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CcceeeecccHHHHHHHh
Confidence 999999999999999998
No 116
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=2.3e-12 Score=102.66 Aligned_cols=75 Identities=31% Similarity=0.492 Sum_probs=69.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
.-|||+|||+.+||.||.-+|++| |+|.+|.+++| +||||+.|.+.....-|+..|||..|.||.|+|....
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqy--Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQY--GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred eEEEECCCcccccCCcEEEEeecc--CceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 569999999999999999999999 99999999998 7999999999999999999999999999999998765
Q ss_pred CCC
Q 015149 327 KPT 329 (412)
Q Consensus 327 ~~~ 329 (412)
...
T Consensus 114 ~Yk 116 (219)
T KOG0126|consen 114 NYK 116 (219)
T ss_pred ccc
Confidence 433
No 117
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.18 E-value=5e-11 Score=111.81 Aligned_cols=75 Identities=28% Similarity=0.506 Sum_probs=71.6
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
++|||+|+|+++++++|.++|+.. |.|.++++..| |||||++|.+.++|.+|++.|||.++.||+|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~--g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV--GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc--CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 789999999999999999999999 99999999877 7999999999999999999999999999999999997
Q ss_pred CCC
Q 015149 327 KPT 329 (412)
Q Consensus 327 ~~~ 329 (412)
...
T Consensus 97 ~~~ 99 (435)
T KOG0108|consen 97 NRK 99 (435)
T ss_pred ccc
Confidence 654
No 118
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=5.6e-12 Score=103.49 Aligned_cols=147 Identities=24% Similarity=0.352 Sum_probs=121.9
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC--CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeccc
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~--~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~ 122 (412)
...+||||.|+-..++|+-|.++|-.-|+|..|.|..++ +..||||.|+++....-|+..+||..+.+.++.+.+-..
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 346889999999999999999999999999999887654 345999999999999999999999999999988874332
Q ss_pred CCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 015149 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202 (412)
Q Consensus 123 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~ 202 (412)
... .-|...++++.+.+.|+.-|++..+++..+. .|+++.++|+.+...-..-.++....+....-+
T Consensus 87 ~sh------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 87 NSH------------APLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred CCc------------chhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 210 0167788999999999999999999998874 488999999999888888888887666554433
Q ss_pred EE
Q 015149 203 QI 204 (412)
Q Consensus 203 ~l 204 (412)
++
T Consensus 154 ~~ 155 (267)
T KOG4454|consen 154 KV 155 (267)
T ss_pred Cc
Confidence 33
No 119
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.17 E-value=6.5e-11 Score=114.09 Aligned_cols=105 Identities=23% Similarity=0.335 Sum_probs=86.6
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCCCCc
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE 127 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~~~~ 127 (412)
|||||++|+..+++.||.++|+.||+|.+|.++. .++||||.+.+.++|.+|+..|++..+.++.|+|.|+..+..+.
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 8899999999999999999999999999988855 66799999999999999999999999999999999998776555
Q ss_pred CCC--CCceEEECCCCccccHHHHHHHhh
Q 015149 128 DTS--GHFNVFVGDLSPEVTDATLFACFS 154 (412)
Q Consensus 128 ~~~--~~~~l~v~nlp~~~~~~~l~~~f~ 154 (412)
+-. -...+=|.-||++.-.+|++.+.+
T Consensus 500 e~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 500 EYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred hhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 222 222345667787755555665553
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=3.9e-11 Score=116.94 Aligned_cols=146 Identities=17% Similarity=0.290 Sum_probs=120.7
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEe----ecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI----KKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~----~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
++..++||+||+..+.++||...|..+|.+..+.+. .++-+|+|||.|..++++.+|+. ++...+.|+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~-f~d~~~~gK------- 736 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA-FRDSCFFGK------- 736 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh-hhhhhhhhh-------
Confidence 344679999999999999999999999977666554 23458999999999999999995 444444442
Q ss_pred ccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 015149 121 YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (412)
Q Consensus 121 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~ 200 (412)
..|+|+|.|+..|.++++.++.++|.+.+.+++.. ..|+.+|.++|.|.++.++.++....+...+.
T Consensus 737 ------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 737 ------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred ------------hhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhh
Confidence 24999999999999999999999999999987755 56899999999999999999999877777776
Q ss_pred CeEEEEEEccC
Q 015149 201 NRQIRCNWAAK 211 (412)
Q Consensus 201 g~~l~v~~~~~ 211 (412)
.+.+.|..+.+
T Consensus 804 E~~~~v~vsnp 814 (881)
T KOG0128|consen 804 ENNGEVQVSNP 814 (881)
T ss_pred hcCccccccCC
Confidence 66666666544
No 121
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.10 E-value=2.1e-10 Score=110.67 Aligned_cols=78 Identities=26% Similarity=0.454 Sum_probs=74.5
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCCC
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPP 331 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~~ 331 (412)
++||||+.|+..+++.||.++|+.| |.|++|.++.++|||||++.+..+|.+|+.+|+...+.++.|+|.|+......
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feef--GeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEF--GEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhc--ccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999876643
No 122
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.09 E-value=9.9e-11 Score=98.53 Aligned_cols=161 Identities=29% Similarity=0.467 Sum_probs=125.6
Q ss_pred EEEcCCCccCCHHH-H--HHHhhccCCcceEEEeecC---CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccC
Q 015149 50 VYVGNIHPQVTNAL-L--QEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (412)
Q Consensus 50 l~V~nLp~~~t~~~-L--~~~f~~~G~i~~v~~~~~~---~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~ 123 (412)
.++.++-.++..+- | ...|+.|-.+...++++++ ..+++|+.|.....-.++-.+-+++++.-++++..-....
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 44555555544433 2 5677777666666666654 3679999998887777777667777777776666544322
Q ss_pred C---CCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 015149 124 S---QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (412)
Q Consensus 124 ~---~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~ 200 (412)
. ..+-..+..+||++.|..+++++.|...|.+|-....-++++|+.||+++||+||-|.+..++..|+..++|..++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 2 2234456678999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q 015149 201 NRQIRCNWAA 210 (412)
Q Consensus 201 g~~l~v~~~~ 210 (412)
.+.|.+..+.
T Consensus 259 srpiklRkS~ 268 (290)
T KOG0226|consen 259 SRPIKLRKSE 268 (290)
T ss_pred cchhHhhhhh
Confidence 9999876553
No 123
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=4.7e-10 Score=98.73 Aligned_cols=81 Identities=31% Similarity=0.591 Sum_probs=71.9
Q ss_pred CCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHc-CCCeeCCeeeEEEe
Q 015149 246 PENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMG-NARILCGKPIKCSW 324 (412)
Q Consensus 246 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l-~g~~l~g~~l~V~~ 324 (412)
+..+....+|||++|...+++.+|+++|.+| |+|+++++...+++|||+|.+.+.|..|.+++ |...|+|++|+|.|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqy--Geirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQY--GEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhc--CCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 3344556899999999999999999999999 99999999999999999999999999887754 55578999999999
Q ss_pred cCCC
Q 015149 325 GSKP 328 (412)
Q Consensus 325 a~~~ 328 (412)
+++.
T Consensus 300 g~~~ 303 (377)
T KOG0153|consen 300 GRPK 303 (377)
T ss_pred CCCc
Confidence 9983
No 124
>smart00361 RRM_1 RNA recognition motif.
Probab=99.08 E-value=5e-10 Score=78.84 Aligned_cols=56 Identities=23% Similarity=0.425 Sum_probs=49.1
Q ss_pred HHHHHHHHh----hcCcccEEEEE-eec--------cccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 266 SVDLHRHFH----ALCVGTIEDVR-VQR--------DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 266 ~~~L~~~F~----~~~~G~v~~v~-i~~--------~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
+++|+++|+ .| |.|.++. +.. .+|+|||+|.+.++|.+|++.|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~f--G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYF--GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhc--CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 99 9999985 332 27999999999999999999999999999999873
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.06 E-value=7.8e-10 Score=90.61 Aligned_cols=86 Identities=22% Similarity=0.390 Sum_probs=78.3
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcC-CCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVF-PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~-G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
.......-+++..+|.-+.+.++..+|..| |.|..+++.+++.||.++|||||+|++++.|.-|-+.+|+..+.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 334445679999999999999999999999 7788888889999999999999999999999999999999999999999
Q ss_pred EEEccCC
Q 015149 206 CNWAAKG 212 (412)
Q Consensus 206 v~~~~~~ 212 (412)
|++..+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9998766
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=2.7e-10 Score=111.67 Aligned_cols=163 Identities=19% Similarity=0.324 Sum_probs=137.6
Q ss_pred CCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
..+++||++||+..+++.+|+..|..+|.|.+|.|...+ -+...-|+||.|.+...+..|...+.+..|..-.+.+.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 345789999999999999999999999999999887552 3455678999999999999999988888876555555443
Q ss_pred cCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc
Q 015149 210 AKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD 289 (412)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~ 289 (412)
..+ ......+++++|...+....|...|..| |.|..|.+...
T Consensus 449 ~~k------------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~f--Gpir~Idy~hg 490 (975)
T KOG0112|consen 449 QPK------------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRF--GPIRIIDYRHG 490 (975)
T ss_pred ccc------------------------------------cccceeeccCCCCCCChHHHHHHHhhcc--CcceeeecccC
Confidence 221 1223789999999999999999999999 99999988877
Q ss_pred ccEEEEEeCCHHHHHHHHHHcCCCeeCC--eeeEEEecCCCCCC
Q 015149 290 KGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGSKPTPP 331 (412)
Q Consensus 290 kg~afV~f~~~~~A~~A~~~l~g~~l~g--~~l~V~~a~~~~~~ 331 (412)
.-|++|.|.+...+..|+..|.|..|+| ++|+|.|+......
T Consensus 491 q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 491 QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCCC
Confidence 8899999999999999999999999976 88999999877643
No 127
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=7.6e-10 Score=97.41 Aligned_cols=84 Identities=27% Similarity=0.441 Sum_probs=79.1
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
..+.+.|||..|.+-++++||.-+|+.||.|.+|.+++|..||.+-.||||+|++.++++.|.-++++..|+.+.|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCC
Q 015149 209 AAKG 212 (412)
Q Consensus 209 ~~~~ 212 (412)
+..-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 7543
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=3.9e-10 Score=110.58 Aligned_cols=163 Identities=19% Similarity=0.332 Sum_probs=139.2
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC---CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~---~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
.+...++|||++||+..+++.+|+..|..+|.|.+|.|-..+ ...|+||.|.+...+-.|..++.+..|....+++.
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 355778999999999999999999999999999999885542 34599999999999999999999988887777777
Q ss_pred ecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCce
Q 015149 119 WAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (412)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~ 198 (412)
+..+ .....+.+++++|+.++....|...|..||.|..|.+- +.--|++|.|++...+..|+..+.|..
T Consensus 447 lG~~-----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap 515 (975)
T KOG0112|consen 447 LGQP-----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAP 515 (975)
T ss_pred cccc-----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCc
Confidence 6644 45567789999999999999999999999999887654 335689999999999999999999999
Q ss_pred eCC--eEEEEEEccCCCCC
Q 015149 199 LGN--RQIRCNWAAKGATS 215 (412)
Q Consensus 199 ~~g--~~l~v~~~~~~~~~ 215 (412)
|+| +.+.|.++......
T Consensus 516 ~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 516 LGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred CCCCCcccccccccCCCCC
Confidence 976 67889888765433
No 129
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=3.9e-09 Score=93.01 Aligned_cols=82 Identities=18% Similarity=0.416 Sum_probs=71.7
Q ss_pred CCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHH-hCCCccCCceeEEE
Q 015149 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVT-LNGRHIFGQPIKVN 118 (412)
Q Consensus 40 ~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~-l~~~~~~g~~l~v~ 118 (412)
.+..+...+||||++|-..++|.||+++|.+||+|+++.++.. .++|||+|.+.+.|..|.+. ++...|.|.+|.|.
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~--~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR--KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc--cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 3345677789999999999999999999999999999998764 45999999999999998866 56677899999999
Q ss_pred ecccC
Q 015149 119 WAYAS 123 (412)
Q Consensus 119 ~~~~~ 123 (412)
|..+.
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99883
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.93 E-value=5.9e-09 Score=97.32 Aligned_cols=78 Identities=26% Similarity=0.361 Sum_probs=72.2
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
...++|||.+|...+...||+.+|++| |+|+..+++.+ +.|+||++.+.++|.++|+.||..+|+|+.|.|.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKy--GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKY--GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHh--cceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 345789999999999999999999999 99999999876 7899999999999999999999999999999999
Q ss_pred ecCCCC
Q 015149 324 WGSKPT 329 (412)
Q Consensus 324 ~a~~~~ 329 (412)
-++...
T Consensus 481 kaKNEp 486 (940)
T KOG4661|consen 481 KAKNEP 486 (940)
T ss_pred ecccCc
Confidence 888654
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.87 E-value=6.2e-09 Score=97.17 Aligned_cols=82 Identities=24% Similarity=0.347 Sum_probs=76.7
Q ss_pred CceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 015149 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (412)
Q Consensus 132 ~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 211 (412)
.++|||.+|...+...||+.+|++||.|+..+++.+..+...+.|+||++.+.++|.+||.+|+.+.|.|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 47899999999999999999999999999999999888888899999999999999999999999999999999998865
Q ss_pred CC
Q 015149 212 GA 213 (412)
Q Consensus 212 ~~ 213 (412)
..
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 43
No 132
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5.7e-09 Score=92.00 Aligned_cols=78 Identities=19% Similarity=0.349 Sum_probs=72.6
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccc------cEEEEEeCCHHHHHHHHHHcCCCeeCCeeeE
Q 015149 248 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAALAIQMGNARILCGKPIK 321 (412)
Q Consensus 248 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~k------g~afV~f~~~~~A~~A~~~l~g~~l~g~~l~ 321 (412)
..+|.+.|||.-|.+-++++||.-+|+.| |.|.+|.+++|+ .||||+|.+.+++.+|.-+|++..|.+++|+
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrF--G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRF--GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhc--ccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 45677999999999999999999999999 999999999993 4899999999999999999999999999999
Q ss_pred EEecCC
Q 015149 322 CSWGSK 327 (412)
Q Consensus 322 V~~a~~ 327 (412)
|.|.-+
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 998753
No 133
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.84 E-value=3.7e-09 Score=94.91 Aligned_cols=168 Identities=17% Similarity=0.235 Sum_probs=131.9
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeec----CCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~----~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
...++.+++++-+.+.+.++..++..+|.+..+..... .+++++++.|...+.+..|+.........++.+..-..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 45778999999999999999999999997666665542 35889999999999999999543333444433222222
Q ss_pred ccC-------CCCcCCCCCceEE-ECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 015149 121 YAS-------SQREDTSGHFNVF-VGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192 (412)
Q Consensus 121 ~~~-------~~~~~~~~~~~l~-v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~ 192 (412)
+.. ..+.......+++ +++++..+++++|+..|..+|.|..+++..++.++..+||+||.|.....+..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 211 1122223334455 99999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceeCCeEEEEEEccCCC
Q 015149 193 DLNGKWLGNRQIRCNWAAKGA 213 (412)
Q Consensus 193 ~l~~~~~~g~~l~v~~~~~~~ 213 (412)
. ....+.++.+.+.+..+..
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred c-ccCcccCcccccccCCCCc
Confidence 7 8888999999998876553
No 134
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.83 E-value=4.2e-09 Score=94.58 Aligned_cols=174 Identities=24% Similarity=0.298 Sum_probs=134.4
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
...++|++++...+.+.++..++...|.+....+.....+..++|++++.|...+.+..++.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 45679999999999999899999999988888887767788999999999999999999999444446666655444333
Q ss_pred CCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-
Q 015149 211 KGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD- 289 (412)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~- 289 (412)
....... ........+......+|.||+..+++++|+.+|..+ |.|..+++..+
T Consensus 167 ~~~~~~~-----------------------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~--~~i~~~r~~~~~ 221 (285)
T KOG4210|consen 167 RRGLRPK-----------------------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSS--GEITSVRLPTDE 221 (285)
T ss_pred ccccccc-----------------------chhcccccCccccceeecccccccchHHHhhhccCc--CcceeeccCCCC
Confidence 2210000 000011122222334499999999999999999999 99999999865
Q ss_pred -----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCC
Q 015149 290 -----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 330 (412)
Q Consensus 290 -----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~ 330 (412)
+|+++|.|.+..++..++.. ....+.++++++.+.++...
T Consensus 222 ~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 222 ESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred CccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcc
Confidence 78999999999999999987 88899999999999876653
No 135
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=5e-09 Score=98.10 Aligned_cols=180 Identities=18% Similarity=0.214 Sum_probs=117.0
Q ss_pred CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
.+...+.++|+|-|||.++++++|+++|+.||+|.+++.- ...+|.+||+|-|..+|+.|++.|++.++.|+.+.
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3445677899999999999999999999999999986543 45589999999999999999999999999999888
Q ss_pred EEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEE
Q 015149 206 CNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR 285 (412)
Q Consensus 206 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~ 285 (412)
.... .......... .... ..........+..+-+...+++ .|++..+...++..|.-+ |.+.. +
T Consensus 144 ~~~~---~~~~~~~~~~-----~~~~----~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~--~~~~~-~ 207 (549)
T KOG4660|consen 144 RPGG---ARRAMGLQSG-----TSFL----NHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVD--GSSPG-R 207 (549)
T ss_pred CCCc---ccccchhccc-----chhh----hhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhcc--Ccccc-c
Confidence 1111 1000000000 0000 0000000000011111123333 388888887777777777 66655 3
Q ss_pred eecc-ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCC
Q 015149 286 VQRD-KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327 (412)
Q Consensus 286 i~~~-kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~ 327 (412)
.... +..-|++|.+..++..+...+ |..+.+....+.+..+
T Consensus 208 ~~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 208 ETPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred cccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 3222 335688888888887776654 7778888877777665
No 136
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=1.2e-09 Score=90.08 Aligned_cols=142 Identities=25% Similarity=0.299 Sum_probs=115.3
Q ss_pred CCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
...++|||.|+...++|+-|.++|-.-|+|..+.|..++ .+..| ||||+|.++-....|++.+||..+.++.+.+.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 345789999999999999999999999999999887664 45556 9999999999999999999999999998877543
Q ss_pred cCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEec----CCCCCCHHHHHHHHhhcCcccEEEEE
Q 015149 210 AKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGN----LSSEVTSVDLHRHFHALCVGTIEDVR 285 (412)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----L~~~~t~~~L~~~F~~~~~G~v~~v~ 285 (412)
-++ |...++++.+...|+.. |.+..++
T Consensus 85 -----------------------------------------------~G~shapld~r~~~ei~~~v~s~a--~p~~~~R 115 (267)
T KOG4454|consen 85 -----------------------------------------------CGNSHAPLDERVTEEILYEVFSQA--GPIEGVR 115 (267)
T ss_pred -----------------------------------------------cCCCcchhhhhcchhhheeeeccc--CCCCCcc
Confidence 333 66678899999999998 8999999
Q ss_pred eecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEE
Q 015149 286 VQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322 (412)
Q Consensus 286 i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V 322 (412)
+..+ +.++|+++......-.++....+..+.-+++.+
T Consensus 116 ~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 116 IPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred ccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCccc
Confidence 8765 578899887776667777776666554444433
No 137
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.76 E-value=2.4e-08 Score=82.05 Aligned_cols=75 Identities=23% Similarity=0.438 Sum_probs=69.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
..++|..+|..+.+..+..+|.+|+ |.|..+++.|+ ||||||+|.+.+.|.-|-+.||++.|.|+.|.|.+-.
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~-g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFG-GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcC-CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 5789999999999999999999996 89999999776 7999999999999999999999999999999999875
Q ss_pred CC
Q 015149 327 KP 328 (412)
Q Consensus 327 ~~ 328 (412)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 54
No 138
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.74 E-value=1.1e-08 Score=86.48 Aligned_cols=161 Identities=23% Similarity=0.370 Sum_probs=114.5
Q ss_pred ceEEECCCCccccHHH---HHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 133 FNVFVGDLSPEVTDAT---LFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~---l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
...+++++-..+..+- +...|+.+-.+....++.+. -+.-++++|+.|.....-.++-..-+++.++.+.++..-.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 3455665555544433 25667777666666777663 4567899999998887777766655666666665444322
Q ss_pred cCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc
Q 015149 210 AKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD 289 (412)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~ 289 (412)
....... ..+-.....+||.+.|..+++++.|-..|.+| -.....++++|
T Consensus 176 tswedPs----------------------------l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kf--psf~~akviRd 225 (290)
T KOG0226|consen 176 TSWEDPS----------------------------LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKF--PSFQKAKVIRD 225 (290)
T ss_pred cccCCcc----------------------------cccCccccceeecccccccccHHHHHHHHHhc--cchhhcccccc
Confidence 2111110 01111223789999999999999999999999 67777777766
Q ss_pred ------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 290 ------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 290 ------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
+||+||.|.+..++.+|+..|+|.-++.++|++.-
T Consensus 226 kRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 226 KRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 79999999999999999999999999999998753
No 139
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.69 E-value=1.4e-07 Score=65.97 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=49.1
Q ss_pred ceEEEecCCCCCCHHH----HHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCC
Q 015149 253 TTVYVGNLSSEVTSVD----LHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~----L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~ 327 (412)
..|+|.|||.+.+... |+.++..+| |+|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|..|.|+|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCG-GkVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCG-GKVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT---EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccC-CEEEEEe----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 5699999999988665 456666776 8998884 57899999999999999999999999999999999743
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.65 E-value=1.2e-07 Score=82.08 Aligned_cols=86 Identities=30% Similarity=0.397 Sum_probs=76.8
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
.....+|+|.|||+.+.++||+++|..||.+..+-+.++ .+|++.|.|-|.|...++|..|++.+++..++|+.+.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 344467999999999999999999999999998888888 5789999999999999999999999999999999999988
Q ss_pred ccCCCCC
Q 015149 209 AAKGATS 215 (412)
Q Consensus 209 ~~~~~~~ 215 (412)
.......
T Consensus 159 i~~~~~~ 165 (243)
T KOG0533|consen 159 ISSPSQS 165 (243)
T ss_pred ecCcccc
Confidence 7655443
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.64 E-value=2.2e-07 Score=68.62 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=66.6
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeC----CeeeEE
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILC----GKPIKC 322 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~----g~~l~V 322 (412)
.||.|+|||...|.++|.+++.....|....+.++-| .|||||.|.+++.|.+-.+.++|..+. .|...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 6899999999999999999998876688888888766 699999999999999999999999874 577788
Q ss_pred EecCCC
Q 015149 323 SWGSKP 328 (412)
Q Consensus 323 ~~a~~~ 328 (412)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888643
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.60 E-value=3.5e-09 Score=95.43 Aligned_cols=150 Identities=22% Similarity=0.312 Sum_probs=120.7
Q ss_pred ceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCce-eCCeEEEEEEccC
Q 015149 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW-LGNRQIRCNWAAK 211 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~-~~g~~l~v~~~~~ 211 (412)
+.+|++||.+..+.+|+..+|...-.-.+-.++ .-.||+||.+.+...|.+|++.++|+. +.|.++.+..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 468999999999999999999754111111122 126899999999999999999999864 8999999988765
Q ss_pred CCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeec-cc
Q 015149 212 GATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR-DK 290 (412)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~-~k 290 (412)
+.... +.+-|+|+|+..-|+.|..++..| |.|+.|.... +.
T Consensus 76 kkqrs------------------------------------rk~Qirnippql~wevld~Ll~qy--g~ve~~eqvnt~~ 117 (584)
T KOG2193|consen 76 KKQRS------------------------------------RKIQIRNIPPQLQWEVLDSLLAQY--GTVENCEQVNTDS 117 (584)
T ss_pred HHHHh------------------------------------hhhhHhcCCHHHHHHHHHHHHhcc--CCHhHhhhhccch
Confidence 53221 568899999999999999999999 9999886642 32
Q ss_pred c--EEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 291 G--FGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 291 g--~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
. ..-|+|.+.+.+..|+.+|+|.-|....++|.|--
T Consensus 118 etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 118 ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 2 23478999999999999999999999999999864
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.60 E-value=3.7e-07 Score=67.37 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=67.0
Q ss_pred ceEEECCCCccccHHHHHHHhhcC--CCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC----CeEEEE
Q 015149 133 FNVFVGDLSPEVTDATLFACFSVF--PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG----NRQIRC 206 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~l~~~f~~~--G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~----g~~l~v 206 (412)
++|+|+|||...+.++|.+++... |...-+.+..|..++.+.|||||.|.+.+.+.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988643 77777888889889999999999999999999999999999874 355566
Q ss_pred EEcc
Q 015149 207 NWAA 210 (412)
Q Consensus 207 ~~~~ 210 (412)
.|+.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6664
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.60 E-value=1.3e-07 Score=90.87 Aligned_cols=74 Identities=30% Similarity=0.615 Sum_probs=69.2
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC-------CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-------KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~-------~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
+.|||+||++.++++.|...|..||+|.+|+|+..+ .+.|+||-|-+..||.+|+++|+|..+.+.++++.|+
T Consensus 175 TNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 175 TNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred cceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 459999999999999999999999999999998764 3669999999999999999999999999999999998
Q ss_pred c
Q 015149 121 Y 121 (412)
Q Consensus 121 ~ 121 (412)
+
T Consensus 255 k 255 (877)
T KOG0151|consen 255 K 255 (877)
T ss_pred c
Confidence 5
No 145
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.56 E-value=2.6e-07 Score=79.93 Aligned_cols=79 Identities=30% Similarity=0.403 Sum_probs=70.3
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
.....+|+|.|||+.|+++||+++|+.| |.++.+-+..+ .|.|-|.|...++|.+|++.+||..++|+.|++.
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~--~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEF--GELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHh--ccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 3344789999999999999999999999 88888888766 5899999999999999999999999999999998
Q ss_pred ecCCCC
Q 015149 324 WGSKPT 329 (412)
Q Consensus 324 ~a~~~~ 329 (412)
...++.
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 766544
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.56 E-value=3.9e-07 Score=63.73 Aligned_cols=72 Identities=17% Similarity=0.324 Sum_probs=48.8
Q ss_pred CEEEEcCCCccCCHHH----HHHHhhccC-CcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeccc
Q 015149 48 RSVYVGNIHPQVTNAL----LQEVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~----L~~~f~~~G-~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~ 122 (412)
..|+|.|||.+.+... |++++..+| .|.+| ..+.|+|.|.+.+.|.+|.+.++|..+.|+.|.|.+...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 4699999999988755 556777888 55544 356899999999999999999999999999999999865
Q ss_pred CCC
Q 015149 123 SSQ 125 (412)
Q Consensus 123 ~~~ 125 (412)
...
T Consensus 77 ~r~ 79 (90)
T PF11608_consen 77 NRE 79 (90)
T ss_dssp S--
T ss_pred ccc
Confidence 543
No 147
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.51 E-value=2.1e-07 Score=87.21 Aligned_cols=77 Identities=25% Similarity=0.402 Sum_probs=65.7
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeec----CCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~----~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
....+|||+|||.++++++|+++|+.||+|+...|... +...||||+|.+.+.+..|+. -+...+.++++.|+--
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEec
Confidence 45566999999999999999999999999998888653 234799999999999999994 5588889999999865
Q ss_pred cc
Q 015149 121 YA 122 (412)
Q Consensus 121 ~~ 122 (412)
.+
T Consensus 365 ~~ 366 (419)
T KOG0116|consen 365 RP 366 (419)
T ss_pred cc
Confidence 43
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.49 E-value=7.8e-07 Score=85.68 Aligned_cols=79 Identities=29% Similarity=0.505 Sum_probs=72.2
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc---------ccEEEEEeCCHHHHHHHHHHcCCCeeCCee
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---------KGFGFVRYSTHPEAALAIQMGNARILCGKP 319 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~---------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~ 319 (412)
.+..++|||+||++.++++.|...|+.| |.|..++|+-. +.|+||-|.+..+|.+|++.|+|..+.+..
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrf--gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRF--GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhccc--CcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 4566889999999999999999999999 99999998732 679999999999999999999999999999
Q ss_pred eEEEecCCCC
Q 015149 320 IKCSWGSKPT 329 (412)
Q Consensus 320 l~V~~a~~~~ 329 (412)
|++.|++.-.
T Consensus 249 ~K~gWgk~V~ 258 (877)
T KOG0151|consen 249 MKLGWGKAVP 258 (877)
T ss_pred eeeccccccc
Confidence 9999997544
No 149
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.45 E-value=4.1e-07 Score=85.28 Aligned_cols=80 Identities=28% Similarity=0.456 Sum_probs=68.7
Q ss_pred ceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
.+|||.|||.++++++|++.|..||+|+...|......++..+||||+|.+.+++..+|. .+...++++++.|+-....
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEecccc
Confidence 459999999999999999999999999998887654345555999999999999999999 4578899999999876554
Q ss_pred C
Q 015149 213 A 213 (412)
Q Consensus 213 ~ 213 (412)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.42 E-value=4.2e-08 Score=88.60 Aligned_cols=152 Identities=28% Similarity=0.455 Sum_probs=121.7
Q ss_pred EEEEcCCCccCCHHHHHHHhhccC-CcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCC-ccCCceeEEEecccCCCC
Q 015149 49 SVYVGNIHPQVTNALLQEVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR-HIFGQPIKVNWAYASSQR 126 (412)
Q Consensus 49 tl~V~nLp~~~t~~~L~~~f~~~G-~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~-~~~g~~l~v~~~~~~~~~ 126 (412)
.+|++||.+.++.+||+.+|...- +...-.++ ..||+||++.+..-|.+|++.+++. .+.|+.+.|.++-++..+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~---k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr 79 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV---KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR 79 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee---ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH
Confidence 589999999999999999998642 11111111 3579999999999999999999985 578999999987665532
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEe-ecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVM-WDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~-~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
++++-|+|+|+...++-+..++..||.++.|... .|.+ .-..-|+|...+.+..||.+++|..+.+..++
T Consensus 80 -----srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k 150 (584)
T KOG2193|consen 80 -----SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLK 150 (584)
T ss_pred -----hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhh
Confidence 3458899999999999999999999999988553 2322 22344789999999999999999999999999
Q ss_pred EEEccCC
Q 015149 206 CNWAAKG 212 (412)
Q Consensus 206 v~~~~~~ 212 (412)
+.|....
T Consensus 151 ~~YiPde 157 (584)
T KOG2193|consen 151 VGYIPDE 157 (584)
T ss_pred cccCchh
Confidence 9887544
No 151
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.41 E-value=4.4e-07 Score=78.83 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=77.4
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
....+...+||+|+.+.++.+++...|+.||.|..+.+..|+.++.++||+||+|.+.+.+..++. |++..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 344556789999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEccCC
Q 015149 207 NWAAKG 212 (412)
Q Consensus 207 ~~~~~~ 212 (412)
.+..-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 876443
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.27 E-value=9.1e-07 Score=79.44 Aligned_cols=186 Identities=12% Similarity=0.083 Sum_probs=123.0
Q ss_pred ceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCC---CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKT---GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~---~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
..|-|.||.++++.++++.+|...|.|.++.++..... ......|||.|.+...+..|.. |.++++-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 36899999999999999999999999999998863211 2346789999999999988877 7778877777777654
Q ss_pred cCCCCCCCcc----ccCCcccccccccCCCC--------CCCCCCCCC-CC---------CCCCcceEEEecCCCCCCHH
Q 015149 210 AKGATSGDEK----QSSDSKSVVELTNGISD--------GQEKSNEDA-PE---------NNPQYTTVYVGNLSSEVTSV 267 (412)
Q Consensus 210 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~---------~~~~~~~l~V~nL~~~~t~~ 267 (412)
.......... ...+..+....+.+... +..+..... +. ...-.++++|++|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 4333222100 00000000000000000 000000000 00 11123689999999999999
Q ss_pred HHHHHHhhcCcccEEEEEeecc--ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEE
Q 015149 268 DLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322 (412)
Q Consensus 268 ~L~~~F~~~~~G~v~~v~i~~~--kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V 322 (412)
++.+.|..+ |.|...++-.. ..+|.|+|........|+.. +|.++.-...++
T Consensus 167 e~~e~f~r~--Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~k~qhsr~ 220 (479)
T KOG4676|consen 167 ESGESFERK--GEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRERKRQHSRR 220 (479)
T ss_pred hhhhhhhhc--chhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhhhhhhhhh
Confidence 999999999 99998877533 66888999988888888875 888876444433
No 153
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.26 E-value=1.8e-06 Score=75.10 Aligned_cols=77 Identities=29% Similarity=0.449 Sum_probs=69.4
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
....+||+|+.+.+|.+++...|+.| |.|..+.+..| |||+||+|.+.+....++. |+|..|.|+.+.|.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~C--g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESC--GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred CCceEEEeccccccccchhhheeecc--CCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 34789999999999999999999999 89988888766 7899999999999999998 899999999999998
Q ss_pred cCCCCC
Q 015149 325 GSKPTP 330 (412)
Q Consensus 325 a~~~~~ 330 (412)
.+-..+
T Consensus 177 ~r~~~p 182 (231)
T KOG4209|consen 177 KRTNVP 182 (231)
T ss_pred eeeecC
Confidence 876643
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.17 E-value=4.9e-06 Score=63.06 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=45.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCC-----eeCCeeeEEE
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNAR-----ILCGKPIKCS 323 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~-----~l~g~~l~V~ 323 (412)
..|+|.+++..++.++|++.|+.| |.|..|.+.+....|+|.|.+.+.|.+|+..+.-. .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~--g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF--GEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS----EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc--CCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 568999999999999999999999 99999999998889999999999999999876433 4555555443
No 155
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.15 E-value=1.3e-06 Score=78.50 Aligned_cols=149 Identities=18% Similarity=0.150 Sum_probs=115.8
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC-------CCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-------SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~-------~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
..|.|.||.+.++.+.+..+|...|.|.++.++.+.. ...|||.|.+...+.-|- -|.+..|-++-|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 3799999999999999999999999999999977432 458999999999888887 67777777877777654
Q ss_pred ccCCCC--------------------------------cC---------------------CCCCceEEECCCCccccHH
Q 015149 121 YASSQR--------------------------------ED---------------------TSGHFNVFVGDLSPEVTDA 147 (412)
Q Consensus 121 ~~~~~~--------------------------------~~---------------------~~~~~~l~v~nlp~~~~~~ 147 (412)
...... .. ..-.++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 311100 00 0002569999999999999
Q ss_pred HHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 015149 148 TLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202 (412)
Q Consensus 148 ~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~ 202 (412)
++-++|..+|+|...++. .+...-+|.|+|........|+. .+|..+.-+
T Consensus 167 e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k~q 216 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQ 216 (479)
T ss_pred hhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhhhh
Confidence 999999999998766554 34556788899999999999988 677666533
No 156
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.88 E-value=3.5e-05 Score=65.78 Aligned_cols=100 Identities=23% Similarity=0.333 Sum_probs=83.0
Q ss_pred HHHHHHHHhCCCccCCceeEEEecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccE
Q 015149 97 SAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGF 176 (412)
Q Consensus 97 ~A~~Al~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~ 176 (412)
-|..|..+|++....|+.++|.|+... .|+|.||...++-+.+.+.|+.||+|+.-.++.| ..+++.+-
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a----------~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~e 74 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA----------ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTRE 74 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc----------eEEEEecchhhhhHHHHHhhhhcCccchheeeec-cccccccc
Confidence 467777889999999999999999763 4999999999999999999999999988777777 45788899
Q ss_pred EEEEecCHHHHHHHHHHhCCce----eCCeEEEEE
Q 015149 177 GFVSFRNQEDAQSAINDLNGKW----LGNRQIRCN 207 (412)
Q Consensus 177 afV~f~~~~~A~~ai~~l~~~~----~~g~~l~v~ 207 (412)
++|+|...-.+.+|...+...- ..+++.-|.
T Consensus 75 g~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 75 GIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred chhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 9999999999999998774332 244554444
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.84 E-value=3.3e-05 Score=68.23 Aligned_cols=76 Identities=25% Similarity=0.420 Sum_probs=63.8
Q ss_pred CEEEEcCCCccCCHHHH------HHHhhccCCcceEEEeecCC-----CCEE--EEEecCHHHHHHHHHHhCCCccCCce
Q 015149 48 RSVYVGNIHPQVTNALL------QEVFSSTGPLEGCKLIKKDK-----SSYG--FVDYFDRRSAALAIVTLNGRHIFGQP 114 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L------~~~f~~~G~i~~v~~~~~~~-----~g~a--fV~f~~~~~A~~Al~~l~~~~~~g~~ 114 (412)
.-+||-+||..+..+++ .++|.+||.|..|.+.+... .+.+ ||.|.+.|||.+||.+.+|..+.||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 44899999999887773 58999999999887765431 2334 99999999999999999999999999
Q ss_pred eEEEecccC
Q 015149 115 IKVNWAYAS 123 (412)
Q Consensus 115 l~v~~~~~~ 123 (412)
|+..|...+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999988754
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.79 E-value=5e-05 Score=57.57 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=38.7
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCC
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR 108 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~ 108 (412)
+.|.|.+++..++-++|++.|+.||+|.-|.+.+ ....|||.|.+.+.|..|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHHhc
Confidence 4689999999999999999999999988776644 4458999999999999999876543
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.72 E-value=8.3e-05 Score=48.58 Aligned_cols=53 Identities=19% Similarity=0.350 Sum_probs=43.4
Q ss_pred CCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHH
Q 015149 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAI 102 (412)
Q Consensus 47 ~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al 102 (412)
++.|-|.|.+.+..+ +++.+|..||+|..+.+- ....+.||.|.+..+|.+||
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 367899999977765 566688899999987774 45669999999999999985
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.72 E-value=7.8e-05 Score=65.94 Aligned_cols=73 Identities=27% Similarity=0.519 Sum_probs=62.5
Q ss_pred ceEEEecCCCCCCHHH----H--HHHHhhcCcccEEEEEeecc-------ccEE--EEEeCCHHHHHHHHHHcCCCeeCC
Q 015149 253 TTVYVGNLSSEVTSVD----L--HRHFHALCVGTIEDVRVQRD-------KGFG--FVRYSTHPEAALAIQMGNARILCG 317 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~----L--~~~F~~~~~G~v~~v~i~~~-------kg~a--fV~f~~~~~A~~A~~~l~g~~l~g 317 (412)
+-+||-+|++.+-.|+ | .++|++| |.|..|.+-+. .+.+ ||+|.+.++|.+++...+|..++|
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQy--GkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQY--GKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhc--cceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 5689999999886665 2 4799999 99999988765 2333 999999999999999999999999
Q ss_pred eeeEEEecCC
Q 015149 318 KPIKCSWGSK 327 (412)
Q Consensus 318 ~~l~V~~a~~ 327 (412)
|.|+..|+..
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999998864
No 161
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.68 E-value=4.1e-05 Score=68.72 Aligned_cols=85 Identities=21% Similarity=0.261 Sum_probs=76.0
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeee--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD--------ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~--------~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~ 200 (412)
.....+|||.+||..+++++|.++|..+|.|.. |.+.+|++|+..|+-|.|.|.+...|..|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 344567999999999999999999999988743 567889999999999999999999999999999999999
Q ss_pred CeEEEEEEccCCC
Q 015149 201 NRQIRCNWAAKGA 213 (412)
Q Consensus 201 g~~l~v~~~~~~~ 213 (412)
|..|+|..+....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998887665
No 162
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.65 E-value=4.7e-05 Score=72.35 Aligned_cols=84 Identities=18% Similarity=0.183 Sum_probs=71.5
Q ss_pred CCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCee---CCee
Q 015149 243 EDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARIL---CGKP 319 (412)
Q Consensus 243 ~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l---~g~~ 319 (412)
...+..+..++.|+|.||-.-.|.-.|+.++..-| |.|++.-|.+=|..|||.|.+.++|......|||..+ ++++
T Consensus 435 vpSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtg-g~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 435 VPSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTG-GNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCCCCCCccceEeeecccccchHHHHHHHHhhcc-CchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 34455677889999999999999999999999764 7888773333388999999999999999999999976 7899
Q ss_pred eEEEecCC
Q 015149 320 IKCSWGSK 327 (412)
Q Consensus 320 l~V~~a~~ 327 (412)
|.+.|++.
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 99999874
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.61 E-value=0.00018 Score=47.01 Aligned_cols=52 Identities=21% Similarity=0.467 Sum_probs=44.2
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHH
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAI 307 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~ 307 (412)
+.|-|.+.+.+..+. +..+|..| |+|.++.+...+...+|+|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~f--GeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASF--GEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhc--CCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 468899999776654 55588889 99999999977889999999999999985
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.54 E-value=0.00037 Score=51.93 Aligned_cols=70 Identities=24% Similarity=0.276 Sum_probs=52.6
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEE-------------eeccccEEEEEeCCHHHHHHHHHHcCCCeeCCee
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR-------------VQRDKGFGFVRYSTHPEAALAIQMGNARILCGKP 319 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~-------------i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~ 319 (412)
.-|.|-+.|+. ....+.+.|++| |.|.+.. .........|+|++..+|.+||.+ ||..|.|..
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~--G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSF--GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCC--S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhc--ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 56888899988 666788899999 9998885 344467889999999999999987 999998865
Q ss_pred e-EEEecC
Q 015149 320 I-KCSWGS 326 (412)
Q Consensus 320 l-~V~~a~ 326 (412)
| -|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4 477764
No 165
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.47 E-value=0.00015 Score=65.15 Aligned_cols=80 Identities=28% Similarity=0.377 Sum_probs=68.6
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEE--------Eeecc------ccEEEEEeCCHHHHHHHHHHcCCCe
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV--------RVQRD------KGFGFVRYSTHPEAALAIQMGNARI 314 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v--------~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~ 314 (412)
.....+|||.+|+..+++++|.++|.++ |.|..= .|.++ ||.|.|+|.+...|+.|+..+++..
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qc--g~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQC--GVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhc--ceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 4455789999999999999999999998 666532 23333 7999999999999999999999999
Q ss_pred eCCeeeEEEecCCCCC
Q 015149 315 LCGKPIKCSWGSKPTP 330 (412)
Q Consensus 315 l~g~~l~V~~a~~~~~ 330 (412)
|.|..|+|.++...+.
T Consensus 141 f~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRTG 156 (351)
T ss_pred ccCCCchhhhhhhccC
Confidence 9999999999987774
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.41 E-value=0.00036 Score=63.99 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=55.1
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-------------------ccEEEEEeCCHHHHHHHHHHc
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-------------------KGFGFVRYSTHPEAALAIQMG 310 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-------------------kg~afV~f~~~~~A~~A~~~l 310 (412)
-+.++|.+.|||.+-.-+.|.++|+.+ |.|+.|+|.+. +-+|+|+|.+.+.|.+|.+.|
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~--G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTV--GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcc--cceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 356999999999999889999999999 99999999754 457999999999999999988
Q ss_pred CCC
Q 015149 311 NAR 313 (412)
Q Consensus 311 ~g~ 313 (412)
+..
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 544
No 167
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.38 E-value=0.001 Score=49.64 Aligned_cols=74 Identities=20% Similarity=0.131 Sum_probs=53.1
Q ss_pred CCCEEEEcCCCccCCHHHHHHHhhccCCcceEE-E----------eecCCCCEEEEEecCHHHHHHHHHHhCCCccCCce
Q 015149 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCK-L----------IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~-~----------~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~ 114 (412)
..+.|.|-+.|.. ....|.+.|++||+|.+.. + ......++-.|.|.++.+|.+|| ..||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 3456899999988 5568899999999988764 0 11224569999999999999999 79999998864
Q ss_pred -eEEEecc
Q 015149 115 -IKVNWAY 121 (412)
Q Consensus 115 -l~v~~~~ 121 (412)
+-|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4466664
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.38 E-value=0.00012 Score=62.47 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=60.9
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCC--------CCcc----cEEEEEecCHHHHHHHHHHhCCce
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKT--------GRSR----GFGFVSFRNQEDAQSAINDLNGKW 198 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~--------~~~~----g~afV~f~~~~~A~~ai~~l~~~~ 198 (412)
....||+++||+.++...|+++|+.||.|-.|.+-....+ |.++ .-|.|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4467999999999999999999999999988877655433 2222 237899999999999999999999
Q ss_pred eCCeE
Q 015149 199 LGNRQ 203 (412)
Q Consensus 199 ~~g~~ 203 (412)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.27 E-value=0.00072 Score=57.98 Aligned_cols=83 Identities=27% Similarity=0.402 Sum_probs=72.0
Q ss_pred HHHHHHHHhCCceeCCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCC
Q 015149 186 DAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVT 265 (412)
Q Consensus 186 ~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t 265 (412)
-|..|...|++....|+.+.|.|+.. ..|+|.||...++
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-----------------------------------------a~l~V~nl~~~~s 44 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-----------------------------------------AELYVVNLMQGAS 44 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-----------------------------------------ceEEEEecchhhh
Confidence 46677777999999999999999843 4699999999999
Q ss_pred HHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcC
Q 015149 266 SVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGN 311 (412)
Q Consensus 266 ~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~ 311 (412)
.|.|.+.|+.| |.|....+..| .+-++|+|...-.|.+|+..++
T Consensus 45 ndll~~~f~~f--g~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 45 NDLLEQAFRRF--GPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred hHHHHHhhhhc--CccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 99999999999 99998777655 4678999999999999998764
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.23 E-value=0.0009 Score=58.33 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=53.1
Q ss_pred HHHHHHHhhccCCcceEEEeecCC-----CCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc
Q 015149 61 NALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (412)
Q Consensus 61 ~~~L~~~f~~~G~i~~v~~~~~~~-----~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~ 121 (412)
++++.+-+.+||.|..|.|+...+ .---||+|+..++|.+|+-.|||.+|+|+.++..|.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 467788999999999999887754 2368999999999999999999999999998888764
No 171
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.22 E-value=0.00022 Score=60.95 Aligned_cols=67 Identities=30% Similarity=0.432 Sum_probs=58.5
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC---------C-------CEEEEEecCHHHHHHHHHHhCCCccC
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK---------S-------SYGFVDYFDRRSAALAIVTLNGRHIF 111 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~---------~-------g~afV~f~~~~~A~~Al~~l~~~~~~ 111 (412)
-.||+++||+.+...-|+++|+.||.|-+|.+-+... + .-++|+|.+...|..+...||+..|.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 3599999999999999999999999999988865321 1 14899999999999999999999999
Q ss_pred Cce
Q 015149 112 GQP 114 (412)
Q Consensus 112 g~~ 114 (412)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 875
No 172
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.19 E-value=0.00048 Score=61.37 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=66.9
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCC--CeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFP--TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G--~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
....+||+||-|.++++||.+.+..-| .+.+++++.++.+|.+||||+|-..+....+..|+.|..+.|.|+.-.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 346799999999999999999887665 45677888888999999999999999999999999999999998765554
No 173
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.17 E-value=0.0006 Score=63.38 Aligned_cols=75 Identities=24% Similarity=0.362 Sum_probs=64.0
Q ss_pred ceEEEecCCCCC-CHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCC
Q 015149 253 TTVYVGNLSSEV-TSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 330 (412)
Q Consensus 253 ~~l~V~nL~~~~-t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~ 330 (412)
+.|-+.-.++.. +.++|...|.+| |+|..|.+..+.-.|.|+|.+..+|-+|.. .++..|++|.|+|.|-++...
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~f--G~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~~ 448 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQF--GEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSPV 448 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhc--CccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecCCcc
Confidence 455666666655 678999999999 999999998876789999999999988875 499999999999999987553
No 174
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.17 E-value=0.00021 Score=61.33 Aligned_cols=58 Identities=24% Similarity=0.431 Sum_probs=50.1
Q ss_pred HHHHHHHh-hcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 267 VDLHRHFH-ALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 267 ~~L~~~F~-~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
|++...|+ +| |+|+.+.+-.+ +|-++|.|...++|.+|++.||+..+.|++|...+..
T Consensus 83 Ed~f~E~~~ky--gEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKY--GEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHh--hhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555555 89 99999988766 7889999999999999999999999999999998764
No 175
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.13 E-value=0.0032 Score=49.87 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=54.7
Q ss_pred CCCCCCCCcceEEEecCCC-----CCCH----HHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCe
Q 015149 244 DAPENNPQYTTVYVGNLSS-----EVTS----VDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARI 314 (412)
Q Consensus 244 ~~~~~~~~~~~l~V~nL~~-----~~t~----~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~ 314 (412)
.....+|+..||.|+=+.+ ..-. .+|.+.|..| |.|.-+|+..+ .-.|+|.+-+.|.+|+. ++|..
T Consensus 19 Vi~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~--GevvLvRfv~~--~mwVTF~dg~sALaals-~dg~~ 93 (146)
T PF08952_consen 19 VISSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQY--GEVVLVRFVGD--TMWVTFRDGQSALAALS-LDGIQ 93 (146)
T ss_dssp -S-----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCC--S-ECEEEEETT--CEEEEESSCHHHHHHHH-GCCSE
T ss_pred HHHhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhC--CceEEEEEeCC--eEEEEECccHHHHHHHc-cCCcE
Confidence 3445566778888876661 1222 3677788888 99999988876 78999999999999997 59999
Q ss_pred eCCeeeEEEecCCCC
Q 015149 315 LCGKPIKCSWGSKPT 329 (412)
Q Consensus 315 l~g~~l~V~~a~~~~ 329 (412)
++|+.|+|+...+.-
T Consensus 94 v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 94 VNGRTLKIRLKTPDW 108 (146)
T ss_dssp ETTEEEEEEE-----
T ss_pred ECCEEEEEEeCCccH
Confidence 999999999876543
No 176
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.12 E-value=0.00033 Score=60.14 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=50.6
Q ss_pred HHHHHHhh-ccCCcceEEEeecCC---CCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc
Q 015149 62 ALLQEVFS-STGPLEGCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (412)
Q Consensus 62 ~~L~~~f~-~~G~i~~v~~~~~~~---~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~ 121 (412)
+||...|+ +||+|+++++..+.. .|-+||.|...++|.+|+..||+..+.|++|..+++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555555 899999998776543 6789999999999999999999999999999988764
No 177
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0031 Score=60.04 Aligned_cols=77 Identities=25% Similarity=0.266 Sum_probs=60.8
Q ss_pred CCCceEEECCCCcccc--H----HHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC-Ce
Q 015149 130 SGHFNVFVGDLSPEVT--D----ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG-NR 202 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~--~----~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~-g~ 202 (412)
.-...|+|.|+|---. - .-|..+|+++|++....+..+..+| ++||.|++|.+..+|..|++.|||..++ +.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 4456789999885321 2 2356789999999999888886555 9999999999999999999999999885 45
Q ss_pred EEEEE
Q 015149 203 QIRCN 207 (412)
Q Consensus 203 ~l~v~ 207 (412)
.+.|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 55554
No 178
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.04 E-value=0.0035 Score=57.71 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=59.6
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeec---CCCCC----------cccEEEEEecCHHHHHHHHHH
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD---QKTGR----------SRGFGFVSFRNQEDAQSAIND 193 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d---~~~~~----------~~g~afV~f~~~~~A~~ai~~ 193 (412)
++.-..++|.+.|||.+-..+.|.++|+.+|.|..|+|..- +.+.+ .+-+|+|+|...+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34457899999999999888999999999999999999865 32221 256799999999999999997
Q ss_pred hCCcee
Q 015149 194 LNGKWL 199 (412)
Q Consensus 194 l~~~~~ 199 (412)
++...-
T Consensus 306 ~~~e~~ 311 (484)
T KOG1855|consen 306 LNPEQN 311 (484)
T ss_pred hchhhh
Confidence 755433
No 179
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.03 E-value=0.00097 Score=63.74 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=65.7
Q ss_pred CCCCCCCCCEEEEcCCCccCCHHHHHHHhh-ccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccC---Ccee
Q 015149 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFS-STGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIF---GQPI 115 (412)
Q Consensus 40 ~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~-~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~---g~~l 115 (412)
++.....+..|+|.||-.-.|.-.|+.++. ..|.|++.+| ++-+..|||.|.+.++|......|||..|. ++.|
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 333566678899999999999999999999 5567888866 555668999999999999999999998875 4667
Q ss_pred EEEecc
Q 015149 116 KVNWAY 121 (412)
Q Consensus 116 ~v~~~~ 121 (412)
.+.|..
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 776654
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.93 E-value=0.0051 Score=41.16 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=44.5
Q ss_pred CEEEEcCCCccCCHHHHHHHhhcc----CCcceEEEeecCCCCEEEEEecCHHHHHHHHHHh
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSST----GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL 105 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~----G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l 105 (412)
.+|+|+|+. +++.+||+.+|..| + ...|.++.+.+ |=|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDtS---cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDTS---CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCCc---EEEEECCHHHHHHHHHcC
Confidence 459999985 68889999999999 5 45688887764 889999999999999654
No 181
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.92 E-value=0.0026 Score=55.55 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=56.2
Q ss_pred ceEEEecCC--CCCC---HHHHHHHHhhcCcccEEEEEeeccc-------cEEEEEeCCHHHHHHHHHHcCCCeeCCeee
Q 015149 253 TTVYVGNLS--SEVT---SVDLHRHFHALCVGTIEDVRVQRDK-------GFGFVRYSTHPEAALAIQMGNARILCGKPI 320 (412)
Q Consensus 253 ~~l~V~nL~--~~~t---~~~L~~~F~~~~~G~v~~v~i~~~k-------g~afV~f~~~~~A~~A~~~l~g~~l~g~~l 320 (412)
+.|.++|.- ..++ ++++++.+++| |.|..|.|.... --.||+|...++|.+|+-.|||+.|+||.+
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKy--g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKY--GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhh--cceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 446666652 2343 46788899999 999999887552 236999999999999999999999999999
Q ss_pred EEEec
Q 015149 321 KCSWG 325 (412)
Q Consensus 321 ~V~~a 325 (412)
+-.|-
T Consensus 360 ~A~Fy 364 (378)
T KOG1996|consen 360 SACFY 364 (378)
T ss_pred eheec
Confidence 87663
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.87 E-value=0.0039 Score=44.00 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=41.3
Q ss_pred EEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCC
Q 015149 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG 107 (412)
Q Consensus 49 tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~ 107 (412)
..+|+ .|..+...||.++|+.||.|. |.++.+. .|||...+.+.|..++..+..
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 35555 999999999999999999876 5555554 699999999999999988764
No 183
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.66 E-value=0.0063 Score=48.27 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=45.7
Q ss_pred HHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCC
Q 015149 62 ALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (412)
Q Consensus 62 ~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~ 124 (412)
++|.+.|..||++.-|+++.+ .-+|.|.+.+.|.+|+ .++|..++|+.|+|+.-.+..
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCccH
Confidence 467889999998887776543 6899999999999999 799999999999999765443
No 184
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.62 E-value=0.0035 Score=56.04 Aligned_cols=72 Identities=17% Similarity=0.327 Sum_probs=59.2
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEE
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V 322 (412)
..-++||+||-..+|++||.+.+...|.-.+.++++..+ ||||+|...+....++.++.|-.++|+|..-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 346899999999999999999988774345555565544 899999999999999999999999999876554
No 185
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.0097 Score=56.82 Aligned_cols=70 Identities=23% Similarity=0.259 Sum_probs=57.5
Q ss_pred ceEEEecCCCCC--C----HHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeC-Ceee
Q 015149 253 TTVYVGNLSSEV--T----SVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILC-GKPI 320 (412)
Q Consensus 253 ~~l~V~nL~~~~--t----~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~-g~~l 320 (412)
.+|+|.|+|.-- . ..-|..+|+++ |+|....++.+ +|+.|++|.+..+|..|++.|||+.|. .+.+
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~--gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKA--GKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhh--ccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 789999998622 2 23456789999 99999998865 799999999999999999999999874 6777
Q ss_pred EEEe
Q 015149 321 KCSW 324 (412)
Q Consensus 321 ~V~~ 324 (412)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 7753
No 186
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.41 E-value=0.011 Score=49.65 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=49.7
Q ss_pred CHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcC--CCeeCCeeeEEEecCCCC
Q 015149 265 TSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGN--ARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 265 t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~--g~~l~g~~l~V~~a~~~~ 329 (412)
..+.|+++|..+ +.+..+..+++=+-..|.|.+.+.|.+|...|+ +..+.|..|+|.|+....
T Consensus 8 ~~~~l~~l~~~~--~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTY--DPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT---SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhc--CCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 458899999999 899999999887779999999999999999999 999999999999995443
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.16 E-value=0.037 Score=37.07 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=44.5
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcC-cccEEEEEeeccccEEEEEeCCHHHHHHHHHHc
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALC-VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMG 310 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~-~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l 310 (412)
..|+|++++ +++.++|+.+|..|. ......|..+-| ..|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 679999996 578899999999881 134556666666 36889999999999999864
No 188
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.99 E-value=0.0062 Score=56.88 Aligned_cols=77 Identities=19% Similarity=0.172 Sum_probs=65.1
Q ss_pred CCCCEEEEcCCCccCC-HHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccC
Q 015149 45 STCRSVYVGNIHPQVT-NALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t-~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~ 123 (412)
.+.+.|-+...|..++ .++|...|.+||.|..|.+-.. .-.|.|+|.+..+|.+|. ..++..|.|+.|+|.|.++.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 4556677778888765 5899999999999999888443 457999999999998888 68999999999999999876
Q ss_pred C
Q 015149 124 S 124 (412)
Q Consensus 124 ~ 124 (412)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 5
No 189
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.97 E-value=0.02 Score=54.71 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhCCCccCCceeEEEecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhc--CCCeeeEEEeecCCCCC
Q 015149 95 RRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSV--FPTCSDARVMWDQKTGR 172 (412)
Q Consensus 95 ~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~--~G~v~~~~~~~d~~~~~ 172 (412)
.+-..+++++..+..+..+-.+|+. ....+.|.++-||.++..++|+.+|+. +-.+.+|.+-.+.
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp---------~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---- 213 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRP---------NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---- 213 (684)
T ss_pred hHHHHHHHhcCCCceeccCcccccc---------CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----
Confidence 3344455555555555555555553 333456888999999999999999964 6778888776542
Q ss_pred cccEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEE
Q 015149 173 SRGFGFVSFRNQEDAQSAINDLNG--KWLGNRQIRC 206 (412)
Q Consensus 173 ~~g~afV~f~~~~~A~~ai~~l~~--~~~~g~~l~v 206 (412)
-.||+|++..||..|.+.|.. +.|-|+.|..
T Consensus 214 ---nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 214 ---NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ---ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 289999999999999987743 3466666543
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.85 E-value=0.022 Score=54.33 Aligned_cols=69 Identities=12% Similarity=0.197 Sum_probs=55.2
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCC--eeCCeeeEE
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNAR--ILCGKPIKC 322 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~--~l~g~~l~V 322 (412)
+.|.|+.||..+..|+++.+|..-.-.++++|.+-.+.+ =||+|.+..||..|.+.|... +|-||+|.-
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 778899999999999999999852116788888766543 489999999999999877654 678877743
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.71 E-value=0.12 Score=39.43 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=50.7
Q ss_pred CCCEEEEcCCCccCCHHHHHHHhhccC-CcceEEEeecCC--CCEEEEEecCHHHHHHHHHHhCCCccCC
Q 015149 46 TCRSVYVGNIHPQVTNALLQEVFSSTG-PLEGCKLIKKDK--SSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~~L~~~f~~~G-~i~~v~~~~~~~--~g~afV~f~~~~~A~~Al~~l~~~~~~g 112 (412)
....+.+...|+.++.++|..+.+.+- .|..++|+++.. +-.++++|.+.++|......+||+.|..
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344455555555666677877777664 577888988764 3478999999999999999999988764
No 192
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.70 E-value=0.045 Score=38.75 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=40.2
Q ss_pred ceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 015149 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~ 195 (412)
.+||--..|..+...||.++|+.||.|. |..+-| ..|||...+.+.|..++..+.
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 3455555999999999999999999974 334423 359999999999999998775
No 193
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.70 E-value=0.33 Score=43.01 Aligned_cols=157 Identities=14% Similarity=0.188 Sum_probs=105.2
Q ss_pred CCCCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC-----------CCCEEEEEecCHHHHHHHH----
Q 015149 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-----------KSSYGFVDYFDRRSAALAI---- 102 (412)
Q Consensus 38 ~~~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~-----------~~g~afV~f~~~~~A~~Al---- 102 (412)
+|.+.|.-..|.|.+.|+..+++--.+...|.+||+|++|.++.+. .....++-|-+.+.+....
T Consensus 6 LPkGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvL 85 (309)
T PF10567_consen 6 LPKGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVL 85 (309)
T ss_pred cCCCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHH
Confidence 5677788888999999999999999999999999999999999865 1357899999998876543
Q ss_pred HHhCC--CccCCceeEEEecccCCCC-----------------------cCCCCCceEEECCCCccccHHHH-HH---Hh
Q 015149 103 VTLNG--RHIFGQPIKVNWAYASSQR-----------------------EDTSGHFNVFVGDLSPEVTDATL-FA---CF 153 (412)
Q Consensus 103 ~~l~~--~~~~g~~l~v~~~~~~~~~-----------------------~~~~~~~~l~v~nlp~~~~~~~l-~~---~f 153 (412)
..|.. ..+....|.+.+..-+... ......|.|.|.= ...+.++++ .+ ++
T Consensus 86 QrLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL 164 (309)
T PF10567_consen 86 QRLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFL 164 (309)
T ss_pred HHHHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhh
Confidence 33332 3455667777765421110 1123345566642 233433333 22 22
Q ss_pred hcCCC----eeeEEEeecCCCC--CcccEEEEEecCHHHHHHHHHHhC
Q 015149 154 SVFPT----CSDARVMWDQKTG--RSRGFGFVSFRNQEDAQSAINDLN 195 (412)
Q Consensus 154 ~~~G~----v~~~~~~~d~~~~--~~~g~afV~f~~~~~A~~ai~~l~ 195 (412)
..-+. ++++.++-..... =++.||.+.|-+...|.+.++.+.
T Consensus 165 ~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 165 KNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred ccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 22233 4566666432222 357899999999999999999775
No 194
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.67 E-value=0.017 Score=41.73 Aligned_cols=74 Identities=12% Similarity=0.101 Sum_probs=47.5
Q ss_pred EEEEecCHHHHHHHHHHhC-CceeCCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceE
Q 015149 177 GFVSFRNQEDAQSAINDLN-GKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTV 255 (412)
Q Consensus 177 afV~f~~~~~A~~ai~~l~-~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 255 (412)
|+|+|.+.+-|.+.++.-. ...++++.+.|....-.......- ......+.++|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~-------------------------qv~~~vs~rtV 55 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKF-------------------------QVFSGVSKRTV 55 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEE-------------------------EEEEcccCCEE
Confidence 6899999999999998322 223567777665543221111100 00112233889
Q ss_pred EEecCCCCCCHHHHHHHHhh
Q 015149 256 YVGNLSSEVTSVDLHRHFHA 275 (412)
Q Consensus 256 ~V~nL~~~~t~~~L~~~F~~ 275 (412)
.|.|||...++++|++.++-
T Consensus 56 lvsgip~~l~ee~l~D~LeI 75 (88)
T PF07292_consen 56 LVSGIPDVLDEEELRDKLEI 75 (88)
T ss_pred EEeCCCCCCChhhheeeEEE
Confidence 99999999999999987653
No 195
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.52 E-value=0.16 Score=38.74 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=49.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc----ccEEEEEeCCHHHHHHHHHHcCCCeeCC
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCG 317 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~g 317 (412)
..+.+...|..++.++|..+.+.+. ..|..+++++| +=.++++|.+.++|..-....||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~-~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFR-EDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhccc-ccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4455555666667777876666663 67888999988 3368999999999999999999998754
No 196
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.45 E-value=0.083 Score=41.41 Aligned_cols=74 Identities=22% Similarity=0.375 Sum_probs=57.9
Q ss_pred CCCCcceEEEecCCCCC-CHHHHHH---HHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 248 NNPQYTTVYVGNLSSEV-TSVDLHR---HFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 248 ~~~~~~~l~V~nL~~~~-t~~~L~~---~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
.+++..+|.|+=|..++ ..+||+. .++.| |.|.+|.+. .+..|.|.|.+...|-+|+.+++. ...|..+.++
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~f--GpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVF--GPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhc--CCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 45667899998777665 3455554 56678 999999875 345799999999999999999776 6678889998
Q ss_pred ec
Q 015149 324 WG 325 (412)
Q Consensus 324 ~a 325 (412)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 85
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.19 E-value=0.019 Score=48.10 Aligned_cols=78 Identities=13% Similarity=0.079 Sum_probs=49.2
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhc-cCCc---ceEEEeecC------CCCEEEEEecCHHHHHHHHHHhCCCccCC--
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSS-TGPL---EGCKLIKKD------KSSYGFVDYFDRRSAALAIVTLNGRHIFG-- 112 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~-~G~i---~~v~~~~~~------~~g~afV~f~~~~~A~~Al~~l~~~~~~g-- 112 (412)
.+...|.|++||+.+|++++.+.++. ++.. ..+.-.... ...-|||.|.+.+++......++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45668999999999999999887776 5544 222211111 12379999999999999999999977753
Q ss_pred ---ceeEEEeccc
Q 015149 113 ---QPIKVNWAYA 122 (412)
Q Consensus 113 ---~~l~v~~~~~ 122 (412)
..-.|+++.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2445666543
No 198
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.14 E-value=0.092 Score=49.11 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=60.7
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccC-CcceEEEeecCC--CCEEEEEecCHHHHHHHHHHhCCCccCC
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTG-PLEGCKLIKKDK--SSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G-~i~~v~~~~~~~--~g~afV~f~~~~~A~~Al~~l~~~~~~g 112 (412)
+.+++.|.|-.+|..++-.||..|+..+- .|..+++++++. +-..+|.|.+.++|......+||..|..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 34488999999999999999999999765 699999999764 4479999999999999999999998874
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.12 E-value=0.0081 Score=53.99 Aligned_cols=80 Identities=16% Similarity=0.290 Sum_probs=61.7
Q ss_pred ceEEECCCCccccHHHHH---HHhhcCCCeeeEEEeecCC--CC-CcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 133 FNVFVGDLSPEVTDATLF---ACFSVFPTCSDARVMWDQK--TG-RSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~l~---~~f~~~G~v~~~~~~~d~~--~~-~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
+-+||-+|+..+..+++. +.|..||.|..+.+..+.. .+ ....-++|+|...++|..||...+|..++|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 458888999887666553 5888999999998887652 11 11223899999999999999999999999998777
Q ss_pred EEccCC
Q 015149 207 NWAAKG 212 (412)
Q Consensus 207 ~~~~~~ 212 (412)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 665444
No 200
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=94.81 E-value=0.065 Score=43.79 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=61.7
Q ss_pred ceEEEecCCCCCC-----HHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCe-eeEEEecC
Q 015149 253 TTVYVGNLSSEVT-----SVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGK-PIKCSWGS 326 (412)
Q Consensus 253 ~~l~V~nL~~~~t-----~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~-~l~V~~a~ 326 (412)
.++.+.+++..+- ......+|..| -+..-.++++..+...|.|.+.+.|..|..++++..|.|+ .++.-|+-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~--n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQI--NEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhh--CcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 4577778877552 23455677777 6667677788878888999999999999999999999998 89988887
Q ss_pred CCCCCCC
Q 015149 327 KPTPPGT 333 (412)
Q Consensus 327 ~~~~~~~ 333 (412)
+......
T Consensus 89 ~~~~~~~ 95 (193)
T KOG4019|consen 89 PGHPESN 95 (193)
T ss_pred CCCcccc
Confidence 6665443
No 201
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.81 E-value=0.12 Score=40.54 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=55.0
Q ss_pred CCCceEEECCCCccc----cHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 130 SGHFNVFVGDLSPEV----TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~----~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
.+-.+|.|+=|..++ +-..|...++.||+|.+|.+. | +-.|.|.|++..+|..|+..+.. ...|..+.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 344567776555443 334556667899999998776 2 45699999999999999998876 56778888
Q ss_pred EEEccCC
Q 015149 206 CNWAAKG 212 (412)
Q Consensus 206 v~~~~~~ 212 (412)
+.|-.+-
T Consensus 156 CsWqqrF 162 (166)
T PF15023_consen 156 CSWQQRF 162 (166)
T ss_pred eeccccc
Confidence 8886543
No 202
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.78 E-value=0.083 Score=44.40 Aligned_cols=61 Identities=25% Similarity=0.209 Sum_probs=45.7
Q ss_pred CHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhC--CCccCCceeEEEeccc
Q 015149 60 TNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN--GRHIFGQPIKVNWAYA 122 (412)
Q Consensus 60 t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~--~~~~~g~~l~v~~~~~ 122 (412)
..+.|+++|..|+++..+..++ +-+-..|.|.+.++|..|...|+ +..+.|..+++.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4588999999999888666554 55579999999999999999999 8999999999998843
No 203
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.58 E-value=0.051 Score=54.62 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=64.5
Q ss_pred eEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCee--CCeeeEEEecCCCC
Q 015149 254 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARIL--CGKPIKCSWGSKPT 329 (412)
Q Consensus 254 ~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l--~g~~l~V~~a~~~~ 329 (412)
+..+.|.+-..+-..|..+|..| |.|.++..+++-..|.|+|.+.+.|..|++.|+|+++ -|-+.+|.|++.-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~y--g~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDY--GSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhh--cchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 34455666667888899999999 9999999999999999999999999999999999975 68899999998644
No 204
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.50 E-value=0.02 Score=55.93 Aligned_cols=109 Identities=16% Similarity=0.194 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeccc
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~ 122 (412)
...+.-+|||+|+-..+..+.++.....+|-|.+++... |+|..|........|+..++...+.|..+.+.....
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q 110 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQ 110 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccchhh
Confidence 345567799999999999999999999999888765544 999999999999999999999999888777664211
Q ss_pred -----CCCC----------cCCCCCceEEECCCCccccHHHHHHHhhcC
Q 015149 123 -----SSQR----------EDTSGHFNVFVGDLSPEVTDATLFACFSVF 156 (412)
Q Consensus 123 -----~~~~----------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~ 156 (412)
+... ......+-.+|.++|..+.+......+.-.
T Consensus 111 ~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is 159 (668)
T KOG2253|consen 111 TIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQIS 159 (668)
T ss_pred hhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhcc
Confidence 0000 001113446677777766666555555433
No 205
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.46 E-value=0.051 Score=45.49 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=50.6
Q ss_pred CCceEEECCCCccccHHHHHHHhhc-CCCe---eeEEEeecC-CCC-CcccEEEEEecCHHHHHHHHHHhCCceeC---C
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSV-FPTC---SDARVMWDQ-KTG-RSRGFGFVSFRNQEDAQSAINDLNGKWLG---N 201 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~-~G~v---~~~~~~~d~-~~~-~~~g~afV~f~~~~~A~~ai~~l~~~~~~---g 201 (412)
...+|.|++||++++++++.+.++. ++.- ..+.-.... ... ..-..|||.|.+.++....++.++|..+. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4458999999999999999997776 5555 223211221 111 12345999999999999999999998762 2
Q ss_pred --eEEEEEEccC
Q 015149 202 --RQIRCNWAAK 211 (412)
Q Consensus 202 --~~l~v~~~~~ 211 (412)
..-.|+++.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3345666644
No 206
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.42 E-value=0.15 Score=45.10 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=56.2
Q ss_pred eEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeee-EEEecCCC
Q 015149 254 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPI-KCSWGSKP 328 (412)
Q Consensus 254 ~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l-~V~~a~~~ 328 (412)
=|-|.++++.- -..|..+|++| |.|.+.....+-.+.+|.|.+.-+|.+||.+ ||+.|+|-.+ -|+-+.++
T Consensus 199 WVTVfGFppg~-~s~vL~~F~~c--G~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPPGQ-VSIVLNLFSRC--GEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCccc-hhHHHHHHHhh--CeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 35666777653 45677889999 9999988886667999999999999999998 9999987554 46665443
No 207
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.14 E-value=0.19 Score=44.61 Aligned_cols=70 Identities=23% Similarity=0.261 Sum_probs=54.0
Q ss_pred EEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCce-eEEEecccC
Q 015149 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP-IKVNWAYAS 123 (412)
Q Consensus 50 l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~-l~v~~~~~~ 123 (412)
|-|-+.|.... ..|..+|++||+|++... ..+.++-+|.|.+.-+|.+|| ..||+.|.|.. |-|..+..+
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~--~~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVT--PSNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeec--CCCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecCCH
Confidence 56667776543 578899999999986544 356679999999999999999 78999888764 566665543
No 208
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.92 E-value=0.021 Score=51.35 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=60.5
Q ss_pred ceEEEecCCCCCCHHHHH---HHHhhcCcccEEEEEeeccc---------cEEEEEeCCHHHHHHHHHHcCCCeeCCeee
Q 015149 253 TTVYVGNLSSEVTSVDLH---RHFHALCVGTIEDVRVQRDK---------GFGFVRYSTHPEAALAIQMGNARILCGKPI 320 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~---~~F~~~~~G~v~~v~i~~~k---------g~afV~f~~~~~A~~A~~~l~g~~l~g~~l 320 (412)
+-+||-+|+..+..+.+. +.|..| |.|..|.+.++. -.++|+|...++|.+||...+|..+.|+.|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqy--gki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQY--GKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCccccccc--ccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 457788888877665554 478888 999999887752 237999999999999999999999999998
Q ss_pred EEEecCCC
Q 015149 321 KCSWGSKP 328 (412)
Q Consensus 321 ~V~~a~~~ 328 (412)
+..++..+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 88877654
No 209
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.57 E-value=0.075 Score=38.49 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=45.8
Q ss_pred EEEEecCHHHHHHHHHHhC-CCccCCceeEEEecccC------CCCcCCCCCceEEECCCCccccHHHHHHHh
Q 015149 88 GFVDYFDRRSAALAIVTLN-GRHIFGQPIKVNWAYAS------SQREDTSGHFNVFVGDLSPEVTDATLFACF 153 (412)
Q Consensus 88 afV~f~~~~~A~~Al~~l~-~~~~~g~~l~v~~~~~~------~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f 153 (412)
|+|+|.+..-|.+.++.-. ...+.+..+.|.-..-. -.-....+.++|.|+|||..+++++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 6899999999999984322 23355666655543321 122345667899999999999999997744
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.15 E-value=0.45 Score=44.69 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=58.3
Q ss_pred CCceEEECCCCccccHHHHHHHhhcC-CCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVF-PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~-G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~ 200 (412)
.+..|+|-.+|..++..||..+...| -.|.++++++|. ..++=.++|.|.+.++|......+||+.|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 37889999999999999999998876 567889999863 245666899999999999999999999874
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.68 E-value=0.59 Score=31.88 Aligned_cols=55 Identities=13% Similarity=0.250 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEE
Q 015149 263 EVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322 (412)
Q Consensus 263 ~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V 322 (412)
.++-++++..+..| .-.+|. .|+.-=||.|.+.++|.++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y---~~~~I~--~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY---RWDRIR--DDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcC---CcceEE--ecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 67889999999999 234444 34434589999999999999999999988877764
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.43 E-value=0.8 Score=31.24 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=43.7
Q ss_pred cccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 143 EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 143 ~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
.++..|++..+..|+-. +|..| .+ | =||.|.+.++|+++....++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d-~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDD-RT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEec-CC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46788999999999752 44444 23 3 489999999999999999999988887765
No 213
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.36 E-value=0.1 Score=52.59 Aligned_cols=72 Identities=22% Similarity=0.319 Sum_probs=60.4
Q ss_pred EEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccC--CceeEEEecccC
Q 015149 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIF--GQPIKVNWAYAS 123 (412)
Q Consensus 50 l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~--g~~l~v~~~~~~ 123 (412)
..+.|.+-..+..-|..+|+.||.|.+.+..++-+ .|.|.|.+.+.|..|++.|+|+.+. |-+.+|.+++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 34445566778889999999999999998877654 8999999999999999999998754 888999988754
No 214
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.91 E-value=0.82 Score=32.11 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHhhcC---cccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 262 SEVTSVDLHRHFHALC---VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 262 ~~~t~~~L~~~F~~~~---~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
..++..+|..++...+ ...|-.|++..+ |+||+-.. +.|.++++.|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3678888888887651 135666777666 89999876 6889999999999999999999864
No 215
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=91.11 E-value=11 Score=33.78 Aligned_cols=189 Identities=10% Similarity=0.074 Sum_probs=107.5
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecC-------CCCCcccEEEEEecCHHHHHHHH----HHhCC-
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQ-------KTGRSRGFGFVSFRNQEDAQSAI----NDLNG- 196 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~-------~~~~~~g~afV~f~~~~~A~~ai----~~l~~- 196 (412)
.--+|.|...|+..+++-..+...|-+||+|++|.++.+. ..........+-|-+.+.+-... +.|..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3445779999999999999999999999999999998764 11234466889999998876653 33332
Q ss_pred -ceeCCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHH-HHH-
Q 015149 197 -KWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLH-RHF- 273 (412)
Q Consensus 197 -~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~-~~F- 273 (412)
..+....|.+.+..-+.................. .......-.....++.|.|.=- ..+.++++. +.+
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~--------~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~ 162 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYL--------VASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLP 162 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccchhhHH--------hhhhhheeecCCcceEEEEEec-CccchhHHHHHhhh
Confidence 3356677777765432221111000000000000 0000001112223467777533 444344432 222
Q ss_pred --hhcC--cccEEEEEeecc--------ccEEEEEeCCHHHHHHHHHHcC--CCeeC-CeeeEEEecC
Q 015149 274 --HALC--VGTIEDVRVQRD--------KGFGFVRYSTHPEAALAIQMGN--ARILC-GKPIKCSWGS 326 (412)
Q Consensus 274 --~~~~--~G~v~~v~i~~~--------kg~afV~f~~~~~A~~A~~~l~--g~~l~-g~~l~V~~a~ 326 (412)
..-+ --.+++|.++.- +.||.++|-+..-|...+..|. +...+ .++..|....
T Consensus 163 fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 163 FLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred hhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccC
Confidence 2110 014666777632 6799999999999999888665 33332 4666666543
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.83 E-value=0.23 Score=48.85 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=66.3
Q ss_pred CCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 244 DAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 244 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
+.....++..++||+|+-..+..+-++.+...+ |.|.++.... |||..|.......+|+..++-..++|+.+.+.
T Consensus 32 p~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~--g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 32 PVFQPLPPRDTVFVGNISYLVSQEFWKSILAKS--GFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred ccccCCCCCceeEecchhhhhhHHHHHHHHhhC--Ccchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 334455667899999999999999999999999 8888877655 99999999999999999999999999888775
Q ss_pred ec
Q 015149 324 WG 325 (412)
Q Consensus 324 ~a 325 (412)
-.
T Consensus 107 ~d 108 (668)
T KOG2253|consen 107 VD 108 (668)
T ss_pred ch
Confidence 43
No 217
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=90.50 E-value=0.39 Score=39.17 Aligned_cols=106 Identities=8% Similarity=-0.040 Sum_probs=71.6
Q ss_pred cCCHHHHHHHhhc-cCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCCCCcCC---CCCc
Q 015149 58 QVTNALLQEVFSS-TGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHF 133 (412)
Q Consensus 58 ~~t~~~L~~~f~~-~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~~~~~~---~~~~ 133 (412)
+.+-..|.+.+.+ ++....+.+..- ..++..+.|.+.+++.+++ ......+.|..+.+..-.+....... .-..
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-~~~~fl~~F~~~~d~~~vl-~~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~v 105 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-GDNLFLFQFESEEDRQRVL-KGGPWNFNGHFLILQRWSPDFNPSEVKFEHIPV 105 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-CCCeEEEEEEeccceeEEE-ecccccccccchhhhhhcccccccccceeccch
Confidence 3556666666654 233223333222 4579999999999999999 45556677887777766544332222 1234
Q ss_pred eEEECCCCcc-ccHHHHHHHhhcCCCeeeEEEe
Q 015149 134 NVFVGDLSPE-VTDATLFACFSVFPTCSDARVM 165 (412)
Q Consensus 134 ~l~v~nlp~~-~~~~~l~~~f~~~G~v~~~~~~ 165 (412)
.|.|.|||.. .+++-++.+-+.+|.+.++...
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 5788999998 6777889999999999877654
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.31 E-value=1 Score=43.72 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=30.8
Q ss_pred CCCceEEECCCCcc-ccHHHHHHHhhcC----CCeeeEEEeec
Q 015149 130 SGHFNVFVGDLSPE-VTDATLFACFSVF----PTCSDARVMWD 167 (412)
Q Consensus 130 ~~~~~l~v~nlp~~-~~~~~l~~~f~~~----G~v~~~~~~~d 167 (412)
..+++|-|-|+.|+ +...||.-+|+.| |.|.+|.|...
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS 214 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS 214 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh
Confidence 44678999999987 7888999999877 57888888755
No 219
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.66 E-value=1.1 Score=31.51 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=34.6
Q ss_pred cCCHHHHHHHhhccCCcc-----eEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 58 QVTNALLQEVFSSTGPLE-----GCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 58 ~~t~~~L~~~f~~~G~i~-----~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
.++..+|..++...+.|. .|.+ ...|+||+-... .|..++..|++..+.|++++|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I----~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDI----FDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEE----eeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 477888998888775444 4444 345899997655 799999999999999999999864
No 220
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=88.45 E-value=1.4 Score=38.77 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHH
Q 015149 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRR 96 (412)
Q Consensus 38 ~~~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~ 96 (412)
.++.....-..-|+++||+.++...||+..+.+.|.+ -..+......|.||+.|.+..
T Consensus 321 ~~~g~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 321 DQSGVEAGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred CCCcccCccccceeeccCccccchHHHHHHHHhcCCC-ceeEeeecCCcceeEecCCcc
Confidence 3333344444559999999999999999999988743 356667778889999997743
No 221
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.58 E-value=2.6 Score=41.11 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=62.1
Q ss_pred CCCCCEEEEcCCCcc-CCHHHHHHHhhcc----CCcceEEEeecC------------CC---------------------
Q 015149 44 ASTCRSVYVGNIHPQ-VTNALLQEVFSST----GPLEGCKLIKKD------------KS--------------------- 85 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~-~t~~~L~~~f~~~----G~i~~v~~~~~~------------~~--------------------- 85 (412)
..++++|-|.||.|+ +.-.||.-+|+.| |.|.+|.|.... ..
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456778999999997 7889999999876 578888886521 01
Q ss_pred ------------------CEEEEEecCHHHHHHHHHHhCCCccCC--ceeEEEecc
Q 015149 86 ------------------SYGFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAY 121 (412)
Q Consensus 86 ------------------g~afV~f~~~~~A~~Al~~l~~~~~~g--~~l~v~~~~ 121 (412)
-||.|+|.+++.|....+.++|..+.. ..+-++|-.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 289999999999999999999999874 556666554
No 222
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=82.51 E-value=0.9 Score=39.79 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=53.0
Q ss_pred cceEEEecCCCCC------------CHHHHHHHHhhcCcccEEEEEeecc----------------ccEE---------E
Q 015149 252 YTTVYVGNLSSEV------------TSVDLHRHFHALCVGTIEDVRVQRD----------------KGFG---------F 294 (412)
Q Consensus 252 ~~~l~V~nL~~~~------------t~~~L~~~F~~~~~G~v~~v~i~~~----------------kg~a---------f 294 (412)
..+|++.+||-.+ +++.|+..|+.| |.|..|.|+.- +||+ |
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eaf--g~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAF--GEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHh--ccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 3678888877543 678899999999 99999988521 3443 4
Q ss_pred EEeCCHHHHHHHHHHcCCCee----CC----eeeEEEecCCCC
Q 015149 295 VRYSTHPEAALAIQMGNARIL----CG----KPIKCSWGSKPT 329 (412)
Q Consensus 295 V~f~~~~~A~~A~~~l~g~~l----~g----~~l~V~~a~~~~ 329 (412)
|.|.....-..|+..|.|..+ .| -.++|.|.++..
T Consensus 227 vqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrh 269 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRH 269 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhh
Confidence 666666666777887777754 22 457788876554
No 223
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.44 E-value=5.7 Score=36.97 Aligned_cols=58 Identities=10% Similarity=0.036 Sum_probs=47.1
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCC-cceEEEeecCCCCEEEEEecCHHHHHHHH
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKDKSSYGFVDYFDRRSAALAI 102 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~-i~~v~~~~~~~~g~afV~f~~~~~A~~Al 102 (412)
.+..=.+.|-|.+.|.....+||...|+.|+. --+|+++-+. .||-.|.+...|..||
T Consensus 386 ~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaL 444 (528)
T KOG4483|consen 386 RESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEAL 444 (528)
T ss_pred CcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHh
Confidence 34445677999999999999999999999973 3345555544 7999999999999999
No 224
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.72 E-value=1.7 Score=40.32 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhcCcccccCCCCCCCcCCCCCCCCC
Q 015149 5 RLKQQTMMQQQSLYQYHPSLLAAPQIEPILSGNLPPRFD 43 (412)
Q Consensus 5 ~~~qq~~~~qq~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 43 (412)
++++++|.+|+|.++.+|.......+....+.+.||+..
T Consensus 230 ~~~~~pQ~qq~q~q~~~pqqr~~~~~~r~~as~~~P~~~ 268 (505)
T COG5624 230 LVDRYPQFQQGQKQVLSPQQRFLHGMERYEASGMPPPAE 268 (505)
T ss_pred HHhhhHHHHHHHHHhhChHhhhhcchhhhhccCCCCCCc
Confidence 333444444444445555555555566666666666554
No 225
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=76.02 E-value=2.2 Score=34.68 Aligned_cols=85 Identities=12% Similarity=-0.017 Sum_probs=57.0
Q ss_pred ccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcc
Q 015149 174 RGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYT 253 (412)
Q Consensus 174 ~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (412)
.++..+.|.+.+++.++++ .....++|..+.+..-.+........ .....-
T Consensus 55 ~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~----------------------------~~~~~v 105 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVK----------------------------FEHIPV 105 (153)
T ss_pred CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccc----------------------------eeccch
Confidence 5789999999999999988 45556777766665433221111000 000012
Q ss_pred eEEEecCCCC-CCHHHHHHHHhhcCcccEEEEEeecc
Q 015149 254 TVYVGNLSSE-VTSVDLHRHFHALCVGTIEDVRVQRD 289 (412)
Q Consensus 254 ~l~V~nL~~~-~t~~~L~~~F~~~~~G~v~~v~i~~~ 289 (412)
=|.|.|||.. .+++-|+.+.+.+ |.+.++.....
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~i--G~~i~vD~~t~ 140 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKI--GEPIEVDENTL 140 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhc--CCeEEEEcCCC
Confidence 3668899986 5888999999999 99999887643
No 226
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=68.02 E-value=2.3 Score=37.35 Aligned_cols=67 Identities=13% Similarity=0.264 Sum_probs=46.5
Q ss_pred CCCCCEEEEcCCCccC------------CHHHHHHHhhccCCcceEEEee-c--------CC-----CC---------EE
Q 015149 44 ASTCRSVYVGNIHPQV------------TNALLQEVFSSTGPLEGCKLIK-K--------DK-----SS---------YG 88 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~------------t~~~L~~~f~~~G~i~~v~~~~-~--------~~-----~g---------~a 88 (412)
...+.||++.+||..+ +++.|+..|..||.|..|.|.. + +. .| -|
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 3445679999999743 6788999999999988776532 1 11 12 25
Q ss_pred EEEecCHHHHHHHHHHhCCCcc
Q 015149 89 FVDYFDRRSAALAIVTLNGRHI 110 (412)
Q Consensus 89 fV~f~~~~~A~~Al~~l~~~~~ 110 (412)
||+|..-..-..|+..|.|..+
T Consensus 226 yvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchH
Confidence 6777776677778877777654
No 227
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=67.39 E-value=17 Score=26.20 Aligned_cols=56 Identities=11% Similarity=0.073 Sum_probs=42.3
Q ss_pred EEEcCCCccCCHHHHHHHhhc-cC-CcceEEEeecCC-CCEEEEEecCHHHHHHHHHHh
Q 015149 50 VYVGNIHPQVTNALLQEVFSS-TG-PLEGCKLIKKDK-SSYGFVDYFDRRSAALAIVTL 105 (412)
Q Consensus 50 l~V~nLp~~~t~~~L~~~f~~-~G-~i~~v~~~~~~~-~g~afV~f~~~~~A~~Al~~l 105 (412)
-|.-..+.+++..+|++.++. || .|.+|.....+. ..-|||.+...++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 344456788999999999997 56 677777665443 358999999999998876544
No 228
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=65.06 E-value=8.4 Score=31.87 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=53.4
Q ss_pred CCEEEEcCCCccCCH-----HHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCc-eeEEEec
Q 015149 47 CRSVYVGNIHPQVTN-----ALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQ-PIKVNWA 120 (412)
Q Consensus 47 ~~tl~V~nLp~~~t~-----~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~-~l~v~~~ 120 (412)
..++.+++++..+-. ....++|..|.+.....+++ +.+..-|.|.+++.|..|...++...|.|+ .++..++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr--sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR--SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH--hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 456888888876432 33456677666555444443 455788999999999999999999999988 7777766
Q ss_pred cc
Q 015149 121 YA 122 (412)
Q Consensus 121 ~~ 122 (412)
.+
T Consensus 88 Q~ 89 (193)
T KOG4019|consen 88 QP 89 (193)
T ss_pred cC
Confidence 53
No 229
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.67 E-value=12 Score=28.93 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=24.7
Q ss_pred ceEEEecCCCC---------CCHHHHHHHHhhcCcccEEEEEeecc-ccEEEEEeCCHH
Q 015149 253 TTVYVGNLSSE---------VTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHP 301 (412)
Q Consensus 253 ~~l~V~nL~~~---------~t~~~L~~~F~~~~~G~v~~v~i~~~-kg~afV~f~~~~ 301 (412)
.++.|-|++.. .+.+.|++.|+.|++++|.-+.-... +|+++|+|...-
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCCh
Confidence 56778888653 35688999999995444443322222 689999997753
No 230
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.98 E-value=18 Score=33.90 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=44.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHH
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 309 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~ 309 (412)
..|-|.++|.....+||...|+.|+ +.=-+|.++.| ..+|-.|.+...|..|+-.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq-~kgfdIkWvDd-thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQ-NKGFDIKWVDD-THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhh-cCCceeEEeec-ceeEEeecchHHHHHHhhc
Confidence 6788999999999999999999994 33344555544 5899999999999999975
No 231
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=62.48 E-value=24 Score=31.40 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=39.3
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCH
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTH 300 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~ 300 (412)
...|++.||+.++.-.||+..+.+.+ ....++.+.-..|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~-~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRE-CTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcC-CCceeEeeecCCcceeEecCCc
Confidence 35699999999999999999999873 3455667767788999999764
No 232
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=59.65 E-value=31 Score=24.42 Aligned_cols=56 Identities=9% Similarity=0.051 Sum_probs=41.6
Q ss_pred EEEcCCCccCCHHHHHHHhhc-cC-CcceEEEeecC-CCCEEEEEecCHHHHHHHHHHh
Q 015149 50 VYVGNIHPQVTNALLQEVFSS-TG-PLEGCKLIKKD-KSSYGFVDYFDRRSAALAIVTL 105 (412)
Q Consensus 50 l~V~nLp~~~t~~~L~~~f~~-~G-~i~~v~~~~~~-~~g~afV~f~~~~~A~~Al~~l 105 (412)
-|+-.++.+++..+|++.++. || .|.+|....-+ +-.-|||.+...++|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 455557789999999999987 56 66666665543 3357999999998888866443
No 233
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.08 E-value=12 Score=28.92 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=28.8
Q ss_pred EEEEcCCCcc---------CCHHHHHHHhhccCCcceEEEeecCC--CCEEEEEecCH-HHHHHHH
Q 015149 49 SVYVGNIHPQ---------VTNALLQEVFSSTGPLEGCKLIKKDK--SSYGFVDYFDR-RSAALAI 102 (412)
Q Consensus 49 tl~V~nLp~~---------~t~~~L~~~f~~~G~i~~v~~~~~~~--~g~afV~f~~~-~~A~~Al 102 (412)
++.|-|++.. .+.++|++.|+.|.+++ ++.+.++. .++++|.|.+. ..-..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 4666677554 35588999999999875 56666543 68999999874 3334455
No 234
>PF06752 E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: IPR009607 This entry represents the C terminus of eukaryotic enhancer of polycomb proteins, which have roles in heterochromatin formation []. This family contains several conserved motifs.
Probab=57.06 E-value=14 Score=31.83 Aligned_cols=6 Identities=50% Similarity=0.711 Sum_probs=3.1
Q ss_pred hhHHHH
Q 015149 2 QQHRLK 7 (412)
Q Consensus 2 ~~~~~~ 7 (412)
||||||
T Consensus 8 QqHQqQ 13 (230)
T PF06752_consen 8 QQHQQQ 13 (230)
T ss_pred HHHHHH
Confidence 455553
No 235
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=56.03 E-value=53 Score=30.92 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=60.2
Q ss_pred CCCCCCcceEEEecCCC-CCCHHHHHHHHhhcC--cccEEEEEeecc---------------------------------
Q 015149 246 PENNPQYTTVYVGNLSS-EVTSVDLHRHFHALC--VGTIEDVRVQRD--------------------------------- 289 (412)
Q Consensus 246 ~~~~~~~~~l~V~nL~~-~~t~~~L~~~F~~~~--~G~v~~v~i~~~--------------------------------- 289 (412)
+..+.+.++|-|-|++. .+...+|...|+.|. .|.+..|.|.+.
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~ 219 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFG 219 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccC
Confidence 33466778999999997 678899999998773 288888887421
Q ss_pred -------------------cc-------------------EEEEEeCCHHHHHHHHHHcCCCeeCC--eeeEEEec
Q 015149 290 -------------------KG-------------------FGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWG 325 (412)
Q Consensus 290 -------------------kg-------------------~afV~f~~~~~A~~A~~~l~g~~l~g--~~l~V~~a 325 (412)
+| ||.|+|.+.+.+......++|.++.. ..+-+.|.
T Consensus 220 ~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 220 DDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred CccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 12 68899999999999999999998754 34444443
No 236
>PF14893 PNMA: PNMA
Probab=54.51 E-value=9.4 Score=35.42 Aligned_cols=52 Identities=15% Similarity=0.306 Sum_probs=34.3
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhc----cCCcc--eEEEeecCCCCEEEEEecCH
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSS----TGPLE--GCKLIKKDKSSYGFVDYFDR 95 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~----~G~i~--~v~~~~~~~~g~afV~f~~~ 95 (412)
-+..|.|.|.+||.++++++|.+.+.. .|... .-.+.+..+..-|+|+|...
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 456788999999999999999887663 45322 11112222445788888543
No 237
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=52.77 E-value=64 Score=21.17 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=43.1
Q ss_pred eEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCH----HHHHHHHHH
Q 015149 254 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTH----PEAALAIQM 309 (412)
Q Consensus 254 ~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~----~~A~~A~~~ 309 (412)
++.|.|+.-.--...++..+... -.|.++.+....+.+-|+|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~--~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKL--PGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS--TTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcC--CCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 46777887777788899999998 7899999999889999999754 455566654
No 238
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=51.90 E-value=34 Score=23.50 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=43.1
Q ss_pred HHHHHHhhcCC-CeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 147 ATLFACFSVFP-TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 147 ~~l~~~f~~~G-~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
++|.+.|...| +|..+.-+..+.++..-..-||+.....+...+ ++=..++++.+.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 46777777776 466776666666667777888988877553332 3345678899999887554
No 239
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=49.69 E-value=31 Score=23.67 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=42.1
Q ss_pred HHHHHHhhcCC-CeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 147 ATLFACFSVFP-TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 147 ~~l~~~f~~~G-~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
++|.+.|...| ++..+.-+..+.++..-..-+|+.....+-.. -++=+.++|+.+.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46778888877 46777777666666666777888776543333 24445678999999876544
No 240
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=48.00 E-value=23 Score=33.10 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=46.1
Q ss_pred CCEEEEcCCCccCCHHHHHHHhhccCC-cceEEEeecC------CCCEEEEEecCHHHHHHHHHHhCCCccC
Q 015149 47 CRSVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD------KSSYGFVDYFDRRSAALAIVTLNGRHIF 111 (412)
Q Consensus 47 ~~tl~V~nLp~~~t~~~L~~~f~~~G~-i~~v~~~~~~------~~g~afV~f~~~~~A~~Al~~l~~~~~~ 111 (412)
...|.|..||+..++.+|.+-...+-+ +.-..+.... ..+.|||.|.+.++.......++|..|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 456999999999999999988887643 2211222111 1458999999999977777777776543
No 241
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=46.36 E-value=41 Score=31.20 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=40.0
Q ss_pred EEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhc
Q 015149 88 GFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSV 155 (412)
Q Consensus 88 afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~ 155 (412)
|||.|.+..+|..|.+.+.... ++.++++.+..+. .|.=.||..+..+..+|.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~---------DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD---------DIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc---------cccccccCCChHHHHHHHHHHH
Confidence 7999999999999997554433 3556777665444 2666788777777777766543
No 242
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=45.25 E-value=28 Score=32.53 Aligned_cols=62 Identities=10% Similarity=0.108 Sum_probs=47.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc--------ccEEEEEeCCHHHHHHHHHHcCCCee
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--------KGFGFVRYSTHPEAALAIQMGNARIL 315 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~--------kg~afV~f~~~~~A~~A~~~l~g~~l 315 (412)
..+.|.+||+..++++|.+-..++. -.|....+... .+.++|.|.+.++...-...++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~-~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFP-EHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCc-cccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 6789999999999999998888762 34444444422 46789999999997777778888865
No 243
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=42.32 E-value=30 Score=32.53 Aligned_cols=10 Identities=10% Similarity=0.202 Sum_probs=3.9
Q ss_pred HHHHHHHHhh
Q 015149 266 SVDLHRHFHA 275 (412)
Q Consensus 266 ~~~L~~~F~~ 275 (412)
.++|+--..+
T Consensus 460 ~d~I~~s~rk 469 (505)
T COG5624 460 DDIIHMSYRK 469 (505)
T ss_pred HHHHHHHHHh
Confidence 3344433333
No 244
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=42.15 E-value=1.9e+02 Score=27.52 Aligned_cols=39 Identities=26% Similarity=0.286 Sum_probs=30.5
Q ss_pred CCCCCEEEEcCCCcc-CCHHHHHHHhhcc----CCcceEEEeec
Q 015149 44 ASTCRSVYVGNIHPQ-VTNALLQEVFSST----GPLEGCKLIKK 82 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~-~t~~~L~~~f~~~----G~i~~v~~~~~ 82 (412)
..+...|-|-||.|+ +.-.||...|+.| |+|..|.|...
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 456677999999997 7778999888865 57887877554
No 245
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=40.50 E-value=66 Score=21.60 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=15.0
Q ss_pred HHHHHHHhhcCCCeeeEEE
Q 015149 146 DATLFACFSVFPTCSDARV 164 (412)
Q Consensus 146 ~~~l~~~f~~~G~v~~~~~ 164 (412)
..+||++|+..|+|.-+-+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999865443
No 246
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=40.00 E-value=1.2e+02 Score=30.39 Aligned_cols=79 Identities=10% Similarity=0.217 Sum_probs=54.1
Q ss_pred EEEEEecCHHHHHHHHHHhCCCccCCceeE---EEecc-----------cCCC----CcCCCCCceEEECCCCccccHHH
Q 015149 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIK---VNWAY-----------ASSQ----REDTSGHFNVFVGDLSPEVTDAT 148 (412)
Q Consensus 87 ~afV~f~~~~~A~~Al~~l~~~~~~g~~l~---v~~~~-----------~~~~----~~~~~~~~~l~v~nlp~~~~~~~ 148 (412)
-||+++.+...-.-..+.|+...+.+..|. -+||. .... ..+..+...+|+.+|+.++.++-
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dV 317 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDV 317 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHH
Confidence 699999999888777777887766553332 22332 1111 23344567899999999998876
Q ss_pred HHHHhhcCCCeeeEEEe
Q 015149 149 LFACFSVFPTCSDARVM 165 (412)
Q Consensus 149 l~~~f~~~G~v~~~~~~ 165 (412)
=.++....-.++.++|+
T Consensus 318 Q~~~irsipGlEna~i~ 334 (621)
T COG0445 318 QEQIIRSIPGLENAEIL 334 (621)
T ss_pred HHHHHHhCcccccceee
Confidence 67777777667777776
No 247
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=39.45 E-value=1.1e+02 Score=22.04 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=42.7
Q ss_pred eEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc---ccEEEEEeCCHHHHHHHHHHc
Q 015149 254 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMG 310 (412)
Q Consensus 254 ~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~---kg~afV~f~~~~~A~~A~~~l 310 (412)
.-|.-..+.+.+..+|+..++..-.-.|.+|+...- ..-|+|++..-+.|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 355666789999999999998752257888876543 345999999988888776553
No 248
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=38.66 E-value=75 Score=24.22 Aligned_cols=112 Identities=19% Similarity=0.254 Sum_probs=56.2
Q ss_pred CCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCC--ccCCceeEEEecccCCC-C-cCCC
Q 015149 55 IHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR--HIFGQPIKVNWAYASSQ-R-EDTS 130 (412)
Q Consensus 55 Lp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~--~~~g~~l~v~~~~~~~~-~-~~~~ 130 (412)
||+-+ +.|.++|+.=|+|.+|..+..-... .|+-.++|. .+.|. |++.-...... + ....
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtqypdn-------------dal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~gTP 74 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQYPDN-------------DALLYVHGTLEQVDGN-IRIGSGQTPASVRIQGTP 74 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEeccCCc-------------hhhheeeeehhhccCc-EEEccCCCcccEEEecCC
Confidence 55544 3588999999999988665432211 222233332 12233 33321111110 0 0111
Q ss_pred CCceEEECCCCccccHHHHHHHhhc---CCCeeeEEEeecCCCCCcccEEEEEecCH
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSV---FPTCSDARVMWDQKTGRSRGFGFVSFRNQ 184 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~---~G~v~~~~~~~d~~~~~~~g~afV~f~~~ 184 (412)
+.+.+.. -|+.++..+++++|+. |-.|..-.+.+|--...+-+.||..|...
T Consensus 75 sgnnv~F--~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 75 SGNNVIF--PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CCCceec--CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 1122221 3678999999999974 33333333444422223455788887654
No 249
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=38.43 E-value=1.3e+02 Score=20.97 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=31.4
Q ss_pred HHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhC
Q 015149 62 ALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN 106 (412)
Q Consensus 62 ~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~ 106 (412)
.++.+.+.++| +.-..+.-....++.|+-+.+.+.+.++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56777788888 444455333336788888889999998887663
No 250
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=38.26 E-value=6.1 Score=38.49 Aligned_cols=66 Identities=18% Similarity=0.155 Sum_probs=50.7
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcceEEEeec----CCCCEEEEEecCHHHHHHHHHHhCCCccCCc
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQ 113 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~----~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~ 113 (412)
++|+++|+++.++-++|..+|+.+--+..+.+... +-..+.+|.|.-.-.-..|+..||+..+...
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 56999999999999999999999865554433221 1245789999988888888888888766543
No 251
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=37.64 E-value=1.2e+02 Score=19.84 Aligned_cols=54 Identities=13% Similarity=0.047 Sum_probs=41.2
Q ss_pred EEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCH----HHHHHHHHH
Q 015149 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDR----RSAALAIVT 104 (412)
Q Consensus 49 tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~----~~A~~Al~~ 104 (412)
|+.|.||.-.--...|.+.+.+.-.|.++.+ +-..+.+-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~v--d~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKV--DLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEE--ETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEE--ECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 5788888888888999999999877888877 44556888888754 455555544
No 252
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=36.42 E-value=1.6e+02 Score=21.41 Aligned_cols=45 Identities=16% Similarity=0.017 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCcccEEEEEeecc--ccEEEEEeCCHHHHHHHHHHcC
Q 015149 266 SVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGN 311 (412)
Q Consensus 266 ~~~L~~~F~~~~~G~v~~v~i~~~--kg~afV~f~~~~~A~~A~~~l~ 311 (412)
.+.++++++.+| |+++++.+... --...+++.+.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~G-g~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALG-GKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcC-CEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 467788889987 89999888765 3457889999988887665443
No 253
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=35.63 E-value=1.3e+02 Score=21.91 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=36.1
Q ss_pred HHHHHHHhhccC-CcceEEEeecCCCCEEEEEecCHHHHHHHHHHhC
Q 015149 61 NALLQEVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN 106 (412)
Q Consensus 61 ~~~L~~~f~~~G-~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~ 106 (412)
.+.+++++++.| ++.++.+...+-.-...+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 356778888887 7888888887767789999999998888774443
No 254
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=35.31 E-value=1.5e+02 Score=20.93 Aligned_cols=56 Identities=14% Similarity=0.079 Sum_probs=41.7
Q ss_pred eEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc---ccEEEEEeCCHHHHHHHHHH
Q 015149 254 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQM 309 (412)
Q Consensus 254 ~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~---kg~afV~f~~~~~A~~A~~~ 309 (412)
.-|+-.++.+.+..+|+..++..-.-.|.+|+...- ..-|||++..-+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 356777899999999999988742257778776543 34599999888888776554
No 255
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=34.17 E-value=54 Score=30.41 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=5.7
Q ss_pred HHHHHHhhcc
Q 015149 62 ALLQEVFSST 71 (412)
Q Consensus 62 ~~L~~~f~~~ 71 (412)
..|.+++..+
T Consensus 99 rt~~~~laeh 108 (475)
T KOG3982|consen 99 RTVVEFLAEH 108 (475)
T ss_pred HHHHHHHHhC
Confidence 4456666655
No 256
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=33.88 E-value=80 Score=29.24 Aligned_cols=31 Identities=35% Similarity=0.367 Sum_probs=22.2
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 177 GFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 177 afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
|||+|.+..+|..+.+.+.... ++.+.++.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 7999999999999999554333 233455554
No 257
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.72 E-value=53 Score=22.75 Aligned_cols=29 Identities=7% Similarity=0.064 Sum_probs=22.9
Q ss_pred cEEEEEeCCHHHHHHHHHHcCCCeeCCee
Q 015149 291 GFGFVRYSTHPEAALAIQMGNARILCGKP 319 (412)
Q Consensus 291 g~afV~f~~~~~A~~A~~~l~g~~l~g~~ 319 (412)
.+.+|.|.+..+|.+|-+.|....+..+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 46899999999999999987766554433
No 258
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=33.51 E-value=53 Score=27.29 Aligned_cols=71 Identities=20% Similarity=0.067 Sum_probs=45.7
Q ss_pred CCCcCCCCCCCCC----CCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC-----CCEEEEEecCHHHHHHH
Q 015149 31 EPILSGNLPPRFD----ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALA 101 (412)
Q Consensus 31 ~~~~s~~~~~~~~----~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~-----~g~afV~f~~~~~A~~A 101 (412)
-..+|.++|.-.+ ..-.|++|.. +.+...++|.++-+ |.+..|.+-+... +|--||+|.+.+.|...
T Consensus 91 rr~~skplpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~ 166 (205)
T KOG4213|consen 91 RRSPSKPLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFAN 166 (205)
T ss_pred hcCcCCCCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhh
Confidence 3445555555432 2344667777 44445556666665 6788777755332 57899999999999998
Q ss_pred HHHh
Q 015149 102 IVTL 105 (412)
Q Consensus 102 l~~l 105 (412)
++.-
T Consensus 167 ~~~~ 170 (205)
T KOG4213|consen 167 DDTH 170 (205)
T ss_pred hhhh
Confidence 8543
No 259
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=33.12 E-value=18 Score=34.75 Aligned_cols=9 Identities=11% Similarity=0.017 Sum_probs=3.8
Q ss_pred ECCCCcccc
Q 015149 137 VGDLSPEVT 145 (412)
Q Consensus 137 v~nlp~~~~ 145 (412)
+-++|..++
T Consensus 393 rpeep~~lt 401 (775)
T KOG1151|consen 393 RPEEPETLT 401 (775)
T ss_pred CCCCccccc
Confidence 344444443
No 260
>PF03249 TSA: Type specific antigen; InterPro: IPR004933 There are several antigenic variants in Rickettsia tsutsugamushi, and a type-specific antigen (TSA) of 56-kilodaltons located on the rickettsial surface is responsible for the variation [, ]. TSA proteins are probably integral membrane proteins. ; GO: 0016021 integral to membrane
Probab=31.22 E-value=23 Score=32.82 Aligned_cols=9 Identities=0% Similarity=0.316 Sum_probs=5.0
Q ss_pred HHHHHHhhc
Q 015149 62 ALLQEVFSS 70 (412)
Q Consensus 62 ~~L~~~f~~ 70 (412)
+.|.++++.
T Consensus 342 ~qi~qlykd 350 (503)
T PF03249_consen 342 EQIIQLYKD 350 (503)
T ss_pred HHHHHHHHH
Confidence 555556554
No 261
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=30.50 E-value=31 Score=31.94 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=10.1
Q ss_pred eeEEEeecCCCCCcccE--EEEEecCH
Q 015149 160 SDARVMWDQKTGRSRGF--GFVSFRNQ 184 (412)
Q Consensus 160 ~~~~~~~d~~~~~~~g~--afV~f~~~ 184 (412)
.+++++-. +|+.|.| -++.|.+.
T Consensus 182 NDLRFVGR--SGRGKsFtLTIti~TnP 206 (475)
T KOG3982|consen 182 NDLRFVGR--SGRGKSFTLTITIFTNP 206 (475)
T ss_pred ccceeecc--cCCCcceEEEEEEecCC
Confidence 34455533 4444444 33444443
No 262
>PF14893 PNMA: PNMA
Probab=30.35 E-value=39 Score=31.48 Aligned_cols=53 Identities=9% Similarity=0.151 Sum_probs=34.1
Q ss_pred CCCceEEECCCCccccHHHHHHHhh----cCCCeeeEEEeecCCCCCcccEEEEEecCH
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFS----VFPTCSDARVMWDQKTGRSRGFGFVSFRNQ 184 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~----~~G~v~~~~~~~d~~~~~~~g~afV~f~~~ 184 (412)
+..+.|.|.+||.++++++|.+.+. ..|...-.--++.+.. ...-++|+|...
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~--~~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE--NAKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc--ccceeeeecccc
Confidence 4456799999999999999988775 3454322211222222 245688888765
No 263
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=29.87 E-value=1.5e+02 Score=18.77 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=29.6
Q ss_pred HHHHHHhhccC-CcceEEEeecC-CCCEEEEEecCHHHHHHHH
Q 015149 62 ALLQEVFSSTG-PLEGCKLIKKD-KSSYGFVDYFDRRSAALAI 102 (412)
Q Consensus 62 ~~L~~~f~~~G-~i~~v~~~~~~-~~g~afV~f~~~~~A~~Al 102 (412)
.++.+.+.+.| .|..+.+.... ..+...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 56777888877 67777766654 4567777888887777765
No 264
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=29.72 E-value=1e+02 Score=22.04 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=24.7
Q ss_pred cEEEEEeecc-ccEEEEEeCCHHHHHHHHHHcCCCe
Q 015149 280 TIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARI 314 (412)
Q Consensus 280 ~v~~v~i~~~-kg~afV~f~~~~~A~~A~~~l~g~~ 314 (412)
.|.++-...+ +||-|||=.+..+..+|++.+.+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 5666666655 9999999999999999998765543
No 265
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=28.70 E-value=28 Score=32.74 Aligned_cols=61 Identities=25% Similarity=0.211 Sum_probs=50.1
Q ss_pred CceEEECCCCccccHH--------HHHHHhhc--CCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 015149 132 HFNVFVGDLSPEVTDA--------TLFACFSV--FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192 (412)
Q Consensus 132 ~~~l~v~nlp~~~~~~--------~l~~~f~~--~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~ 192 (412)
.+.+|+.+++.....+ ++...|.. .+++..+++.+|.....++|..|++|...+.+.+...
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3568888887765555 89999988 6888888888887667889999999999999999874
No 266
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=27.54 E-value=1.5e+02 Score=20.33 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=42.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCH----HHHHHHHHH
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTH----PEAALAIQM 309 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~----~~A~~A~~~ 309 (412)
.++.|.++.-.--...+...++.. ..|.++.+..+++.++|+|.+. ++-..|++.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v--~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~ 62 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEV--DGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIED 62 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcC--CCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHH
Confidence 467788877777778888888888 6799999999999999999883 344455544
No 267
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=27.24 E-value=2.2e+02 Score=19.80 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCcccEEEEEeecc--ccEEEEEeCCHHHHHHHHHHc
Q 015149 267 VDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMG 310 (412)
Q Consensus 267 ~~L~~~F~~~~~G~v~~v~i~~~--kg~afV~f~~~~~A~~A~~~l 310 (412)
+++.+.+..+ | +....+.-. -++.|+-+.+.+.+.++.+.+
T Consensus 37 ~~~~~~~~~~--G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEEN--G-ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHT--T-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHC--C-CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 5667777788 6 666677666 678888888999988887765
No 268
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=26.71 E-value=39 Score=34.01 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=50.6
Q ss_pred eEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 134 ~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
+|++.+--..-+..-+...+..++++...+++.....+..-+-++++|.....+..|.. +.++.+....++
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~k 583 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLK 583 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-ccccccccccee
Confidence 56666666666666777778888888887777766666555579999999998877665 566665555443
No 269
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=26.60 E-value=3.8e+02 Score=23.70 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=59.7
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEe--ecCC--------------CCEEEEEecCHHHHHH--HHHHhC
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDK--------------SSYGFVDYFDRRSAAL--AIVTLN 106 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~--~~~~--------------~g~afV~f~~~~~A~~--Al~~l~ 106 (412)
..+|+.|++ |...++++-|.-|+..+|- +.+.+. ++.+ ..||.|-|....+-++ +++.|.
T Consensus 156 h~nr~aY~~-lS~Rad~~lLe~fc~~~gy-~~vvf~qT~de~g~PiYHTNVmMaige~favic~~~i~~~~R~~vir~L~ 233 (318)
T COG4874 156 HPNRTAYAG-LSQRADRELLEVFCEQIGY-SRVVFFQTRDESGSPIYHTNVMMAIGEHFAVICDEAIPEYERRFVIRSLA 233 (318)
T ss_pred ccchhhhhh-hhcccCHHHHHHHHHHcCC-ceeeeeeeccccCCcceehhHHHHhhhheeeeeccccccHHHHHHHHHHH
Confidence 456667765 7888898888888888872 333332 1211 2488887776544433 555543
Q ss_pred C--Cc-----------cCCceeEEEecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEe
Q 015149 107 G--RH-----------IFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVM 165 (412)
Q Consensus 107 ~--~~-----------~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~ 165 (412)
. +. |.|..|.+.-. ++.+.+-.+--.+..-.+.-+.+.+++|.|.-+.+.
T Consensus 234 ~dgkeiv~is~~Q~~hF~GN~ieL~~~---------~n~~v~aMSa~Ay~~lTd~Q~niie~~~~ivp~~Vp 296 (318)
T COG4874 234 KDGKEIVSISIEQMNHFCGNIIELETA---------DNQKVIAMSASAYEALTDTQLNIIETHGKIVPFAVP 296 (318)
T ss_pred hCCCeEEEeeHHHHHHhhccceEeecc---------CCceEEEeehhHHHHhhHHHHHHHHhhCeeeeeccc
Confidence 2 21 23444433321 122223333333333344556788888888766554
No 270
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=26.58 E-value=86 Score=21.16 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=24.3
Q ss_pred CCHHHHHHHhhccCCcceEEEeecC--CCCEEEE
Q 015149 59 VTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFV 90 (412)
Q Consensus 59 ~t~~~L~~~f~~~G~i~~v~~~~~~--~~g~afV 90 (412)
.-+.+|.++|-+-..|.++.+..++ .+|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 3456788888888889999887765 3677877
No 271
>PRK11901 hypothetical protein; Reviewed
Probab=26.54 E-value=2.6e+02 Score=25.88 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=40.5
Q ss_pred CCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEE--EecCHHHHHHHHHHhCCc
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFV--SFRNQEDAQSAINDLNGK 197 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV--~f~~~~~A~~ai~~l~~~ 197 (412)
..+++|-|..+ ..++.|..+.+.++ +..+++......|+ ..|..| .|.+.++|..|+..|...
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 34556666554 34777888887775 45566665433333 334433 589999999999988643
No 272
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=26.40 E-value=9.4 Score=37.25 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=47.4
Q ss_pred ceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 015149 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~ 200 (412)
++|+++|++++++-.+|..+++.+..+..+-+..+..-.....+..|+|...-.-..|+..|++..+.
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 56999999999999999999998865554433322222234567889998666666666666665553
No 273
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=25.69 E-value=1e+02 Score=25.74 Aligned_cols=57 Identities=14% Similarity=0.063 Sum_probs=37.7
Q ss_pred CceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCC--CcccEEEEEecCHHHHHHHHHH
Q 015149 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTG--RSRGFGFVSFRNQEDAQSAIND 193 (412)
Q Consensus 132 ~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~--~~~g~afV~f~~~~~A~~ai~~ 193 (412)
++++|.. +.+...++|..+-+ |.+..+.+-... .+ ..+|-.||+|.+.+.|..+++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4566666 44444455555555 677766655332 22 5689999999999999998873
No 274
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=25.21 E-value=1.4e+02 Score=21.36 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=23.9
Q ss_pred CcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCC
Q 015149 73 PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG 107 (412)
Q Consensus 73 ~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~ 107 (412)
.|.++ +.++.-+||-||+=.+..+...|++.+.+
T Consensus 33 ~I~Si-~~~~~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSI-FAPDSLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EE-EE-TTSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEE-EEeCCCceEEEEEeCCHHHHHHHHhcccc
Confidence 45554 44555799999999999999999976654
No 275
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=25.21 E-value=4.4e+02 Score=25.88 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=52.8
Q ss_pred CCEEEEcCCCccCCHHHHHHHhhc---cCC---cceEEEeecCCCCEEEE-EecCHHHHHHHHHHhCCCccCCceeEEEe
Q 015149 47 CRSVYVGNIHPQVTNALLQEVFSS---TGP---LEGCKLIKKDKSSYGFV-DYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (412)
Q Consensus 47 ~~tl~V~nLp~~~t~~~L~~~f~~---~G~---i~~v~~~~~~~~g~afV-~f~~~~~A~~Al~~l~~~~~~g~~l~v~~ 119 (412)
.++|.|+.||+.++.+++.+.... -+. |.+++=..++ .+..|| ++.....+...+..|-.. ..|...+
T Consensus 225 ~~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~-~~vrivI~lk~~~~~~~~~~~L~k~----t~L~~s~ 299 (445)
T cd00187 225 RNTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDR-EGIRFVIELKRGAMAEVVLNGLYKV----TKLQTTF 299 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCC-CceEEEEEECCCccHHHHHHHHHHh----cCCceee
Confidence 367999999999998888776553 232 3333332222 355554 455444454444433322 2233332
Q ss_pred cccCCCCcCCCCCceEEE-CCCCccccHHHHHHHhhc
Q 015149 120 AYASSQREDTSGHFNVFV-GDLSPEVTDATLFACFSV 155 (412)
Q Consensus 120 ~~~~~~~~~~~~~~~l~v-~nlp~~~~~~~l~~~f~~ 155 (412)
+. +..++. .|-|...+-.+|.+.|-.
T Consensus 300 ~~----------Nm~~~~~~g~p~~~~l~~iL~~f~~ 326 (445)
T cd00187 300 GI----------NMVAFDPNGRPKKLNLKEILQEFLD 326 (445)
T ss_pred ee----------eEEEEecCCeeEEeCHHHHHHHHHH
Confidence 21 234666 677877777777766644
No 276
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=24.87 E-value=3.4e+02 Score=21.28 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=45.5
Q ss_pred CCEEEEcCCCcc---CCHHHHHHHhhccC-CcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 47 CRSVYVGNIHPQ---VTNALLQEVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 47 ~~tl~V~nLp~~---~t~~~L~~~f~~~G-~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
...|.|+..... .+-..+.+.+..-| .++++.. ..+...|.|.+.++-.+|.+-|....=.+..+.+.
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~----~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAln 106 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITP----ENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQ 106 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEe----eCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 344777766433 56678889999887 4555444 23479999999999999887776544333344333
No 277
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=24.83 E-value=2e+02 Score=22.13 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=25.4
Q ss_pred ccccHHHHHHHhhcC----CCeeeE-EEeecCCCCCcccEEEEEecCHHHHH
Q 015149 142 PEVTDATLFACFSVF----PTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQ 188 (412)
Q Consensus 142 ~~~~~~~l~~~f~~~----G~v~~~-~~~~d~~~~~~~g~afV~f~~~~~A~ 188 (412)
.+++.+||++-++.. -.+..+ .+-.....|++.|||.| |.+.+.|.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 456677777766532 222222 22233456788888887 55555544
No 278
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=24.28 E-value=2.2e+02 Score=18.84 Aligned_cols=48 Identities=10% Similarity=-0.020 Sum_probs=32.7
Q ss_pred CHHHHHHHHhhcCcccEEEEEeecc--ccEEEEEeCCHHHHHHHHHHcCCCe
Q 015149 265 TSVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGNARI 314 (412)
Q Consensus 265 t~~~L~~~F~~~~~G~v~~v~i~~~--kg~afV~f~~~~~A~~A~~~l~g~~ 314 (412)
.-.++.++|...+ ..|.++..... ++.-.+.+.+.+.|.++++. +|+.
T Consensus 14 ~La~v~~~l~~~~-inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAG-INIRALSIADTSEFGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCC-CCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH-CCCE
Confidence 4567888888875 67888776544 44445566777777777765 5554
No 279
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=23.26 E-value=2.1e+02 Score=23.06 Aligned_cols=53 Identities=4% Similarity=-0.006 Sum_probs=36.6
Q ss_pred EEEcCCCccCCHHHHHHHhhc-cC-CcceEEEeecCC-CCEEEEEecCHHHHHHHH
Q 015149 50 VYVGNIHPQVTNALLQEVFSS-TG-PLEGCKLIKKDK-SSYGFVDYFDRRSAALAI 102 (412)
Q Consensus 50 l~V~nLp~~~t~~~L~~~f~~-~G-~i~~v~~~~~~~-~g~afV~f~~~~~A~~Al 102 (412)
-|+--+....+..+|.+.++. |+ .|..|..+..+. ..-|||.+...++|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 344446678999999999987 55 566666554432 347999998877766544
No 280
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=23.14 E-value=2.2e+02 Score=19.34 Aligned_cols=31 Identities=26% Similarity=0.548 Sum_probs=22.9
Q ss_pred HHHHHHHhh--cCcccEEEEEeeccccEE-EEEeCC
Q 015149 267 VDLHRHFHA--LCVGTIEDVRVQRDKGFG-FVRYST 299 (412)
Q Consensus 267 ~~L~~~F~~--~~~G~v~~v~i~~~kg~a-fV~f~~ 299 (412)
++|.+.+.. . |.|...++...+|.+ +|+|.+
T Consensus 18 ~~l~~~l~~~~~--g~I~~fKmtDG~giG~vv~~~n 51 (64)
T PF11061_consen 18 KELVDKLGKNPI--GTIKGFKMTDGSGIGVVVEFSN 51 (64)
T ss_pred HHHHHHhccCCc--EEEEEEEEecCCcEEEEEEecC
Confidence 345555555 5 999999999889976 567765
No 281
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=22.78 E-value=2.1e+02 Score=21.08 Aligned_cols=45 Identities=16% Similarity=0.010 Sum_probs=27.1
Q ss_pred HHHHHhhcCCCeee---EEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 015149 148 TLFACFSVFPTCSD---ARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192 (412)
Q Consensus 148 ~l~~~f~~~G~v~~---~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~ 192 (412)
.+...|++||.--- -.+..-...........|+|.+.+.|..+..
T Consensus 24 ~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 24 KAKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred HhHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHhc
Confidence 34567777764211 1111111224456789999999999988864
No 282
>PRK11901 hypothetical protein; Reviewed
Probab=22.10 E-value=1.6e+02 Score=27.27 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=36.1
Q ss_pred cCCHHHHHHHhhccCCcceEEEeecCCCC---EE--EEEecCHHHHHHHHHHhCCCc
Q 015149 58 QVTNALLQEVFSSTGPLEGCKLIKKDKSS---YG--FVDYFDRRSAALAIVTLNGRH 109 (412)
Q Consensus 58 ~~t~~~L~~~f~~~G~i~~v~~~~~~~~g---~a--fV~f~~~~~A~~Al~~l~~~~ 109 (412)
.-+++.|..|.++++ +..+++.+...+| |. |=.|.+.++|..|+..|....
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 346788999988886 4566666544333 33 336999999999999887543
No 283
>PRK10927 essential cell division protein FtsN; Provisional
Probab=22.05 E-value=2.5e+02 Score=25.88 Aligned_cols=61 Identities=10% Similarity=0.014 Sum_probs=38.5
Q ss_pred EEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEE---EecCHHHHHHHHHHhCCCccCCc
Q 015149 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFV---DYFDRRSAALAIVTLNGRHIFGQ 113 (412)
Q Consensus 49 tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV---~f~~~~~A~~Al~~l~~~~~~g~ 113 (412)
.|-++.+-....-+.|+.-+..-|--..| .. +.++--| -|.+.++|.+++..|...-+.|.
T Consensus 249 ~VQvGSF~n~~nAE~LrAkLa~~G~~A~I--~~--~g~~~RVrVGPf~sr~eAe~a~~rLk~aGis~c 312 (319)
T PRK10927 249 MVQCGSFRGAEQAETVRAQLAFEGFDSKI--TT--NNGWNRVVIGPVKGKENADSTLNRLKMAGHTNC 312 (319)
T ss_pred EEEeCccCCHHHHHHHHHHHHHcCCeeEE--cc--CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCce
Confidence 46667666666667777777777733322 21 2222222 37899999999998887655444
No 284
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=21.56 E-value=86 Score=27.33 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=28.0
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEe
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV 286 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i 286 (412)
..+||+-|+|..+|++.|..+.+.. |.+..+.+
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsql--g~vq~~~y 72 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQL--GHVQELLY 72 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHh--hhhhheec
Confidence 3789999999999999999999999 75555544
No 285
>PHA01632 hypothetical protein
Probab=21.43 E-value=83 Score=20.38 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=17.3
Q ss_pred EEEcCCCccCCHHHHHHHhhc
Q 015149 50 VYVGNIHPQVTNALLQEVFSS 70 (412)
Q Consensus 50 l~V~nLp~~~t~~~L~~~f~~ 70 (412)
|.|..+|..-|+++|++.+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 456689999999999987765
No 286
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=21.19 E-value=76 Score=18.70 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=10.4
Q ss_pred ccCCHHHHHHHhhccC
Q 015149 57 PQVTNALLQEVFSSTG 72 (412)
Q Consensus 57 ~~~t~~~L~~~f~~~G 72 (412)
.+++++.|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4688999999999765
No 287
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.03 E-value=2.7e+02 Score=18.57 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=26.7
Q ss_pred CHHHHHHHhhccC-CcceEEEeecCCCCEE--EEEec--CHHHHHHHHH
Q 015149 60 TNALLQEVFSSTG-PLEGCKLIKKDKSSYG--FVDYF--DRRSAALAIV 103 (412)
Q Consensus 60 t~~~L~~~f~~~G-~i~~v~~~~~~~~g~a--fV~f~--~~~~A~~Al~ 103 (412)
.-..|.++|.++| .|.++........+.+ ++.+. +.+++.++++
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~ 62 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLR 62 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHH
Confidence 4467888999988 6777665554344455 44443 4555555553
No 288
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=20.78 E-value=96 Score=27.05 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=29.0
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceE
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGC 77 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v 77 (412)
...+.+++|+-|+|...+++.|.++.+.+|-+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34456779999999999999999999999955543
No 289
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=20.69 E-value=2.6e+02 Score=19.39 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=27.6
Q ss_pred HHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCcc
Q 015149 66 EVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHI 110 (412)
Q Consensus 66 ~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~ 110 (412)
.-+.+||.|.-+ ++...|+.+ |.|.+++...++.+....|
T Consensus 15 r~L~kfG~i~Y~----Skk~kYvvl-Yvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 15 RQLRKFGDIHYV----SKKMKYVVL-YVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred HhHhhcccEEEE----ECCccEEEE-EECHHHHHHHHHHHhcCCC
Confidence 356789976633 334446655 7889999999988876554
No 290
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=20.61 E-value=3e+02 Score=22.22 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=39.8
Q ss_pred eEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-cc--EEEEEeCCHHHHHHHHHH
Q 015149 254 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KG--FGFVRYSTHPEAALAIQM 309 (412)
Q Consensus 254 ~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-kg--~afV~f~~~~~A~~A~~~ 309 (412)
.-|+-.++...+..+|++.++..-...|..|+.+.- .| -|||++....+|......
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 456667899999999999998742257788776543 33 599999877766554443
Done!