Query 015149
Match_columns 412
No_of_seqs 310 out of 2670
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 07:33:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 3.7E-47 1.2E-51 347.5 30.6 240 45-329 20-265 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 3.4E-46 1.2E-50 342.5 28.2 245 42-328 36-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 1.4E-34 4.7E-39 252.3 19.3 166 129-328 12-181 (213)
4 4f02_A Polyadenylate-binding p 100.0 4E-34 1.4E-38 249.4 18.1 169 41-212 9-181 (213)
5 3md3_A Nuclear and cytoplasmic 100.0 1.2E-33 4.2E-38 236.7 20.4 162 48-210 1-165 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 5E-33 1.7E-37 233.5 20.2 161 46-209 2-168 (168)
7 1b7f_A Protein (SXL-lethal pro 100.0 8.7E-33 3E-37 232.0 20.7 159 131-325 2-168 (168)
8 3md3_A Nuclear and cytoplasmic 100.0 1.2E-32 4E-37 230.7 20.9 160 133-327 1-166 (166)
9 1l3k_A Heterogeneous nuclear r 100.0 7.4E-33 2.5E-37 238.6 19.6 173 42-216 8-187 (196)
10 2qfj_A FBP-interacting repress 100.0 9.2E-33 3.2E-37 241.7 20.3 175 131-330 27-207 (216)
11 2qfj_A FBP-interacting repress 100.0 9E-33 3.1E-37 241.8 20.1 169 45-213 26-206 (216)
12 1fxl_A Paraneoplastic encephal 100.0 9.6E-33 3.3E-37 231.5 19.2 161 46-209 1-167 (167)
13 1l3k_A Heterogeneous nuclear r 100.0 1.6E-32 5.4E-37 236.5 20.8 173 127-331 8-186 (196)
14 1fxl_A Paraneoplastic encephal 100.0 2.2E-32 7.4E-37 229.3 21.1 158 132-325 2-167 (167)
15 2g4b_A Splicing factor U2AF 65 100.0 4.4E-32 1.5E-36 228.7 18.6 159 45-209 2-171 (172)
16 3nmr_A Cugbp ELAV-like family 100.0 8E-32 2.7E-36 227.7 20.2 161 131-326 2-175 (175)
17 3nmr_A Cugbp ELAV-like family 100.0 6.9E-32 2.4E-36 228.1 18.5 163 45-210 1-175 (175)
18 2adc_A Polypyrimidine tract-bi 100.0 2.3E-31 7.9E-36 234.6 22.2 195 127-328 29-228 (229)
19 2yh0_A Splicing factor U2AF 65 100.0 1.1E-31 3.8E-36 231.5 19.4 166 45-213 2-195 (198)
20 3pgw_A U1-A; protein-RNA compl 100.0 2.2E-31 7.4E-36 242.7 22.2 195 128-327 5-282 (282)
21 2cjk_A Nuclear polyadenylated 100.0 1.5E-32 5.1E-37 230.4 11.7 161 46-212 2-166 (167)
22 3tyt_A Heterogeneous nuclear r 100.0 1.4E-31 4.8E-36 230.7 17.9 162 45-209 2-204 (205)
23 2cjk_A Nuclear polyadenylated 100.0 2.6E-32 8.8E-37 228.9 12.8 159 131-328 2-166 (167)
24 1qm9_A Polypyrimidine tract-bi 100.0 3E-31 1E-35 228.8 19.2 191 131-328 2-197 (198)
25 3tyt_A Heterogeneous nuclear r 100.0 8.1E-31 2.8E-35 225.9 21.3 188 131-325 3-204 (205)
26 2adc_A Polypyrimidine tract-bi 100.0 7.3E-31 2.5E-35 231.4 20.3 164 43-212 30-228 (229)
27 1fje_B Nucleolin RBD12, protei 100.0 2.4E-31 8.3E-36 224.7 14.2 164 128-328 9-174 (175)
28 1fje_B Nucleolin RBD12, protei 100.0 1.5E-30 5.2E-35 219.8 17.7 164 42-212 8-174 (175)
29 2yh0_A Splicing factor U2AF 65 100.0 6.5E-30 2.2E-34 220.5 21.8 177 131-330 3-196 (198)
30 3smz_A Protein raver-1, ribonu 100.0 3.6E-30 1.2E-34 234.9 21.1 168 46-214 94-266 (284)
31 3pgw_A U1-A; protein-RNA compl 100.0 5.9E-30 2E-34 233.2 21.9 163 43-210 5-281 (282)
32 3sde_A Paraspeckle component 1 100.0 5.9E-30 2E-34 230.0 20.6 161 40-212 15-179 (261)
33 1qm9_A Polypyrimidine tract-bi 100.0 2.3E-30 7.7E-35 223.3 16.9 161 46-212 2-197 (198)
34 2g4b_A Splicing factor U2AF 65 100.0 5.2E-30 1.8E-34 215.9 18.6 153 131-326 3-172 (172)
35 2ghp_A U4/U6 snRNA-associated 100.0 5.3E-30 1.8E-34 234.7 18.2 167 45-212 115-291 (292)
36 3sde_A Paraspeckle component 1 100.0 1E-28 3.4E-33 222.0 20.2 154 128-329 18-180 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 3.2E-22 1.1E-26 165.5 15.1 146 161-331 2-153 (158)
38 2kn4_A Immunoglobulin G-bindin 99.9 2.3E-22 8E-27 166.3 14.2 138 77-214 3-152 (158)
39 2i2y_A Fusion protein consists 99.9 2.8E-22 9.5E-27 164.2 12.9 137 171-328 10-148 (150)
40 4f25_A Polyadenylate-binding p 99.9 1.1E-21 3.7E-26 152.8 10.6 109 132-268 5-113 (115)
41 4f25_A Polyadenylate-binding p 99.9 1.5E-21 5.2E-26 152.0 10.2 103 46-148 4-113 (115)
42 2i2y_A Fusion protein consists 99.9 2.6E-21 9E-26 158.4 10.9 123 84-212 12-148 (150)
43 4fxv_A ELAV-like protein 1; RN 99.8 3E-20 1E-24 140.1 11.2 81 131-211 18-98 (99)
44 1sjq_A Polypyrimidine tract-bi 99.8 8E-20 2.7E-24 137.4 10.8 81 249-331 13-95 (105)
45 3r27_A HnRNP L, heterogeneous 99.8 1E-19 3.4E-24 135.3 11.0 84 244-329 13-98 (100)
46 4fxv_A ELAV-like protein 1; RN 99.8 1.3E-19 4.5E-24 136.6 11.0 75 251-327 18-98 (99)
47 2wbr_A GW182, gawky, LD47780P; 99.8 2.3E-19 7.7E-24 128.3 11.0 73 252-326 7-79 (89)
48 3s8s_A Histone-lysine N-methyl 99.8 4.6E-19 1.6E-23 136.2 11.8 83 130-212 4-86 (110)
49 2lxi_A RNA-binding protein 10; 99.8 8.4E-20 2.9E-24 135.5 7.3 83 132-214 1-85 (91)
50 3lqv_A PRE-mRNA branch site pr 99.8 2.6E-19 8.9E-24 139.5 9.7 104 44-158 5-109 (115)
51 2cq1_A PTB-like protein L; RRM 99.8 1.6E-18 5.3E-23 130.6 13.3 80 249-330 12-93 (101)
52 2ad9_A Polypyrimidine tract-bi 99.8 6.3E-19 2.2E-23 136.0 11.2 82 248-331 27-110 (119)
53 1x4d_A Matrin 3; structural ge 99.8 5.2E-19 1.8E-23 133.0 10.2 77 251-329 14-93 (102)
54 2lea_A Serine/arginine-rich sp 99.8 1.5E-19 5.1E-24 144.6 7.7 125 87-215 6-130 (135)
55 2lkz_A RNA-binding protein 5; 99.8 3.1E-19 1.1E-23 132.9 7.9 81 131-211 8-94 (95)
56 2dgo_A Cytotoxic granule-assoc 99.8 6.4E-18 2.2E-22 131.6 15.6 83 250-334 13-101 (115)
57 1wex_A Hypothetical protein (r 99.8 2.2E-18 7.4E-23 130.6 12.3 81 248-330 11-93 (104)
58 2hvz_A Splicing factor, argini 99.8 6E-19 2.1E-23 134.0 9.2 93 48-141 1-100 (101)
59 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.7E-18 5.9E-23 127.7 10.7 83 130-212 4-86 (87)
60 2dgo_A Cytotoxic granule-assoc 99.8 5.4E-18 1.8E-22 132.0 14.1 92 125-216 8-99 (115)
61 1why_A Hypothetical protein ri 99.8 3.7E-18 1.3E-22 128.6 12.6 80 249-330 14-95 (97)
62 1x4d_A Matrin 3; structural ge 99.8 1.2E-18 4E-23 131.1 9.7 89 35-125 3-94 (102)
63 2do0_A HnRNP M, heterogeneous 99.8 8.2E-18 2.8E-22 130.8 15.0 82 250-333 13-99 (114)
64 3md1_A Nuclear and cytoplasmic 99.8 3.5E-18 1.2E-22 124.8 11.7 80 133-212 2-81 (83)
65 1sjq_A Polypyrimidine tract-bi 99.8 1.3E-18 4.3E-23 130.8 9.3 83 43-127 12-96 (105)
66 1whw_A Hypothetical protein ri 99.8 4.4E-18 1.5E-22 128.7 12.4 87 128-214 4-90 (99)
67 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.4E-18 1.8E-22 129.2 12.9 90 39-128 7-98 (103)
68 2cq0_A Eukaryotic translation 99.8 4.4E-18 1.5E-22 129.7 12.2 89 126-214 9-97 (103)
69 2dgx_A KIAA0430 protein; RRM d 99.8 5.6E-18 1.9E-22 127.2 12.4 78 251-330 8-92 (96)
70 2cqc_A Arginine/serine-rich sp 99.8 4.3E-18 1.5E-22 127.8 11.8 87 125-211 8-94 (95)
71 1x4g_A Nucleolysin TIAR; struc 99.8 6E-18 2E-22 130.3 12.9 80 250-331 23-102 (109)
72 2cpj_A Non-POU domain-containi 99.8 3.9E-18 1.3E-22 129.0 11.6 80 249-330 12-91 (99)
73 2cq1_A PTB-like protein L; RRM 99.8 5.7E-18 2E-22 127.5 12.3 85 41-127 9-95 (101)
74 3r27_A HnRNP L, heterogeneous 99.8 2.9E-18 9.8E-23 127.5 10.4 81 42-124 16-98 (100)
75 2ytc_A PRE-mRNA-splicing facto 99.8 4.3E-18 1.5E-22 124.9 11.3 76 249-326 9-85 (85)
76 3s8s_A Histone-lysine N-methyl 99.8 3.8E-18 1.3E-22 131.1 11.4 77 250-328 4-86 (110)
77 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.7E-18 9.3E-23 142.6 11.3 125 90-214 11-154 (165)
78 2lkz_A RNA-binding protein 5; 99.8 1.1E-18 3.6E-23 130.0 7.8 76 250-327 7-94 (95)
79 2lxi_A RNA-binding protein 10; 99.8 9.1E-19 3.1E-23 129.9 7.4 76 253-330 2-85 (91)
80 1x4a_A Splicing factor, argini 99.8 1.7E-17 5.7E-22 127.9 14.8 81 249-331 19-102 (109)
81 2cq3_A RNA-binding protein 9; 99.8 1.1E-17 3.6E-22 127.6 13.5 91 37-127 5-97 (103)
82 2lea_A Serine/arginine-rich sp 99.8 1.1E-18 3.8E-23 139.5 8.3 120 176-332 6-131 (135)
83 2dgs_A DAZ-associated protein 99.8 7.6E-18 2.6E-22 127.4 12.6 87 128-215 6-92 (99)
84 2cpz_A CUG triplet repeat RNA- 99.8 5.3E-18 1.8E-22 132.0 12.0 88 127-214 20-107 (115)
85 2dnz_A Probable RNA-binding pr 99.8 7E-18 2.4E-22 126.6 12.2 85 130-214 3-87 (95)
86 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.6E-18 1.2E-22 125.3 10.4 82 129-210 4-85 (85)
87 2x1f_A MRNA 3'-END-processing 99.8 4.3E-18 1.5E-22 128.0 11.0 82 132-213 2-83 (96)
88 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.7E-17 5.7E-22 126.5 14.4 81 249-331 12-96 (103)
89 2do4_A Squamous cell carcinoma 99.8 9.3E-18 3.2E-22 127.2 12.8 86 127-213 12-97 (100)
90 1x5t_A Splicing factor 3B subu 99.8 5.1E-18 1.7E-22 127.6 11.3 86 130-215 3-89 (96)
91 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6.2E-18 2.1E-22 128.7 11.8 88 128-215 8-95 (102)
92 1x5u_A Splicing factor 3B subu 99.8 6.4E-18 2.2E-22 129.3 11.9 89 126-214 9-97 (105)
93 2dnq_A RNA-binding protein 4B; 99.8 1.1E-17 3.6E-22 124.2 12.6 78 250-331 6-83 (90)
94 1whw_A Hypothetical protein ri 99.8 1.2E-17 4.1E-22 126.3 13.1 80 250-331 6-91 (99)
95 2cq3_A RNA-binding protein 9; 99.8 2.1E-17 7.3E-22 125.9 14.5 82 248-331 11-96 (103)
96 2d9p_A Polyadenylate-binding p 99.8 5.9E-18 2E-22 129.0 11.4 91 38-128 6-98 (103)
97 1p27_B RNA-binding protein 8A; 99.8 5E-18 1.7E-22 130.1 10.9 85 128-212 19-103 (106)
98 2dnz_A Probable RNA-binding pr 99.8 1.2E-17 4E-22 125.4 12.5 80 251-332 4-89 (95)
99 1x4f_A Matrin 3; structural ge 99.8 6.4E-18 2.2E-22 128.8 11.1 80 249-330 22-104 (112)
100 3p5t_L Cleavage and polyadenyl 99.8 8.7E-19 3E-23 130.0 6.1 81 133-213 2-84 (90)
101 2dnm_A SRP46 splicing factor; 99.8 4.7E-18 1.6E-22 129.5 10.4 88 127-214 8-95 (103)
102 1x5u_A Splicing factor 3B subu 99.8 8.8E-18 3E-22 128.5 11.9 89 39-127 7-99 (105)
103 2cpz_A CUG triplet repeat RNA- 99.8 1.4E-17 4.7E-22 129.7 13.2 83 247-331 20-108 (115)
104 2e5h_A Zinc finger CCHC-type a 99.7 8.8E-18 3E-22 125.8 11.5 83 128-210 12-94 (94)
105 1wex_A Hypothetical protein (r 99.7 9.6E-18 3.3E-22 127.1 11.7 83 43-127 11-95 (104)
106 2ad9_A Polypyrimidine tract-bi 99.7 8.3E-18 2.8E-22 129.7 11.5 85 43-129 27-113 (119)
107 2jrs_A RNA-binding protein 39; 99.7 6.9E-18 2.4E-22 129.5 11.1 87 126-212 20-106 (108)
108 2wbr_A GW182, gawky, LD47780P; 99.7 5.7E-18 1.9E-22 121.0 9.7 73 46-120 6-78 (89)
109 1x4h_A RNA-binding protein 28; 99.7 1.2E-17 4.3E-22 129.1 12.5 89 127-215 10-104 (111)
110 1x4a_A Splicing factor, argini 99.7 1.9E-17 6.5E-22 127.5 13.5 88 39-126 14-102 (109)
111 2cq0_A Eukaryotic translation 99.7 1.4E-17 4.7E-22 126.9 12.6 82 249-332 12-99 (103)
112 3ns6_A Eukaryotic translation 99.7 1.9E-18 6.6E-23 130.7 7.7 82 130-211 4-92 (100)
113 2cpf_A RNA binding motif prote 99.7 1.3E-17 4.4E-22 125.9 12.2 79 251-331 4-91 (98)
114 3mdf_A Peptidyl-prolyl CIS-tra 99.7 9.6E-18 3.3E-22 123.0 11.2 75 250-326 5-85 (85)
115 3bs9_A Nucleolysin TIA-1 isofo 99.7 7.6E-18 2.6E-22 124.2 10.5 76 251-328 5-86 (87)
116 2dgu_A Heterogeneous nuclear r 99.7 3.7E-17 1.3E-21 124.5 14.6 79 250-332 9-87 (103)
117 1x4c_A Splicing factor, argini 99.7 2.7E-17 9.1E-22 126.4 13.9 78 251-331 14-96 (108)
118 2la6_A RNA-binding protein FUS 99.7 1E-17 3.5E-22 126.7 11.4 85 126-210 7-99 (99)
119 1x5s_A Cold-inducible RNA-bind 99.7 7.6E-18 2.6E-22 128.2 10.6 88 128-215 8-95 (102)
120 3md1_A Nuclear and cytoplasmic 99.7 1.2E-17 4E-22 122.0 11.0 75 253-329 2-82 (83)
121 2do4_A Squamous cell carcinoma 99.7 2.1E-17 7.2E-22 125.2 12.8 80 249-330 14-98 (100)
122 2cph_A RNA binding motif prote 99.7 1.6E-17 5.3E-22 127.6 12.2 89 126-214 9-99 (107)
123 2dnh_A Bruno-like 5, RNA bindi 99.7 1.7E-17 6E-22 126.9 12.4 87 127-214 10-99 (105)
124 1x5s_A Cold-inducible RNA-bind 99.7 1.8E-17 6E-22 126.1 12.3 86 42-127 7-96 (102)
125 2dgs_A DAZ-associated protein 99.7 2.3E-17 8E-22 124.7 12.8 79 250-331 8-92 (99)
126 2d9p_A Polyadenylate-binding p 99.7 1.6E-17 5.6E-22 126.5 12.0 89 125-215 8-96 (103)
127 2e5j_A Methenyltetrahydrofolat 99.7 1.5E-17 5.1E-22 125.2 11.6 83 41-124 13-95 (97)
128 2cpf_A RNA binding motif prote 99.7 9.8E-18 3.3E-22 126.6 10.6 85 130-214 3-90 (98)
129 2la4_A Nuclear and cytoplasmic 99.7 5E-18 1.7E-22 128.9 9.0 76 251-328 26-101 (101)
130 2e5h_A Zinc finger CCHC-type a 99.7 1.8E-17 6.2E-22 124.0 12.0 76 249-326 13-94 (94)
131 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.2E-17 4E-22 127.1 11.1 80 250-331 10-95 (102)
132 2jvr_A Nucleolar protein 3; RN 99.7 5.8E-18 2E-22 129.6 9.3 76 252-329 28-106 (111)
133 2err_A Ataxin-2-binding protei 99.7 9.5E-18 3.3E-22 129.0 10.5 84 40-123 22-107 (109)
134 2fy1_A RNA-binding motif prote 99.7 1.5E-17 5E-22 129.4 11.7 85 129-214 4-88 (116)
135 2cqd_A RNA-binding region cont 99.7 5.8E-17 2E-21 126.3 15.1 82 248-332 13-100 (116)
136 2cpj_A Non-POU domain-containi 99.7 2E-17 6.7E-22 125.1 12.0 85 39-125 7-91 (99)
137 2khc_A Testis-specific RNP-typ 99.7 6.3E-18 2.2E-22 132.3 9.5 85 126-210 34-118 (118)
138 2cpe_A RNA-binding protein EWS 99.7 1.8E-17 6.2E-22 128.6 12.0 88 127-214 10-105 (113)
139 2cpd_A Apobec-1 stimulating pr 99.7 4.5E-17 1.6E-21 123.1 13.9 81 248-330 11-91 (99)
140 2dnh_A Bruno-like 5, RNA bindi 99.7 2.4E-17 8.3E-22 126.1 12.6 80 250-331 13-100 (105)
141 2dgv_A HnRNP M, heterogeneous 99.7 1.2E-17 4.1E-22 124.5 10.5 80 250-331 6-89 (92)
142 2cph_A RNA binding motif prote 99.7 2.7E-17 9.3E-22 126.3 12.9 81 249-331 12-100 (107)
143 2dgp_A Bruno-like 4, RNA bindi 99.7 1.2E-17 4.1E-22 128.0 10.8 89 126-214 7-98 (106)
144 2div_A TRNA selenocysteine ass 99.7 1.2E-17 4.1E-22 126.3 10.6 84 129-212 6-94 (99)
145 2cq2_A Hypothetical protein LO 99.7 1.4E-17 4.7E-22 127.0 10.8 79 250-330 23-108 (114)
146 2x1f_A MRNA 3'-END-processing 99.7 1.6E-17 5.6E-22 124.7 11.2 76 252-329 2-83 (96)
147 2dng_A Eukaryotic translation 99.7 3.1E-17 1.1E-21 124.9 12.7 86 127-214 10-95 (103)
148 3s7r_A Heterogeneous nuclear r 99.7 1.8E-17 6.3E-22 122.1 11.0 81 128-209 7-87 (87)
149 1oo0_B CG8781-PA, drosophila Y 99.7 1.5E-17 5E-22 128.4 10.9 86 128-213 22-107 (110)
150 2dnm_A SRP46 splicing factor; 99.7 2E-17 6.9E-22 126.0 11.5 80 250-331 11-96 (103)
151 1u6f_A Tcubp1, RNA-binding pro 99.7 2.4E-17 8.3E-22 132.9 12.6 89 127-215 37-125 (139)
152 2dnp_A RNA-binding protein 14; 99.7 3.6E-17 1.2E-21 121.3 12.5 77 250-330 7-83 (90)
153 2cqc_A Arginine/serine-rich sp 99.7 2.7E-17 9.1E-22 123.4 11.9 77 249-327 12-94 (95)
154 2dnq_A RNA-binding protein 4B; 99.7 2.5E-17 8.6E-22 122.1 11.5 81 43-127 4-84 (90)
155 2dgt_A RNA-binding protein 30; 99.7 4.1E-17 1.4E-21 121.5 12.7 77 250-330 8-84 (92)
156 1x5t_A Splicing factor 3B subu 99.7 1.5E-17 5.1E-22 125.1 10.2 79 251-331 4-89 (96)
157 1whx_A Hypothetical protein ri 99.7 1.3E-17 4.5E-22 128.6 10.1 76 252-329 10-85 (111)
158 2kxn_B Transformer-2 protein h 99.7 1.2E-17 4.2E-22 132.2 10.2 87 38-124 37-127 (129)
159 1x4h_A RNA-binding protein 28; 99.7 2.5E-17 8.5E-22 127.4 11.7 89 39-127 7-105 (111)
160 3lqv_A PRE-mRNA branch site pr 99.7 4.3E-18 1.5E-22 132.6 7.4 104 129-277 5-108 (115)
161 2kxn_B Transformer-2 protein h 99.7 1E-17 3.4E-22 132.7 9.6 87 126-212 40-126 (129)
162 2cqd_A RNA-binding region cont 99.7 3E-17 1E-21 127.9 12.2 89 126-215 11-99 (116)
163 1u6f_A Tcubp1, RNA-binding pro 99.7 1.4E-17 4.7E-22 134.4 10.6 84 43-126 38-125 (139)
164 1wi8_A EIF-4B, eukaryotic tran 99.7 3.1E-17 1.1E-21 125.2 11.9 87 127-215 10-97 (104)
165 2jrs_A RNA-binding protein 39; 99.7 3.5E-17 1.2E-21 125.5 12.1 82 246-329 20-107 (108)
166 2fy1_A RNA-binding motif prote 99.7 4E-17 1.4E-21 126.9 12.6 80 251-332 6-90 (116)
167 1p27_B RNA-binding protein 8A; 99.7 1.8E-17 6.3E-22 127.0 10.5 80 249-330 20-105 (106)
168 2ywk_A Putative RNA-binding pr 99.7 2.3E-17 7.8E-22 123.7 10.7 77 249-327 13-94 (95)
169 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.8E-17 6.2E-22 137.6 11.2 137 179-331 11-155 (165)
170 2cqh_A IGF-II mRNA-binding pro 99.7 1.3E-17 4.5E-22 124.5 9.4 79 250-331 6-86 (93)
171 2jwn_A Embryonic polyadenylate 99.7 1.5E-18 5.2E-23 137.1 4.4 81 131-212 35-115 (124)
172 2cqp_A RNA-binding protein 12; 99.7 1.9E-17 6.3E-22 125.0 10.2 84 129-212 12-95 (98)
173 2ywk_A Putative RNA-binding pr 99.7 1.9E-17 6.6E-22 124.1 10.2 83 128-211 12-94 (95)
174 4a8x_A RNA-binding protein wit 99.7 3.4E-17 1.1E-21 121.0 11.3 76 252-329 4-86 (88)
175 2err_A Ataxin-2-binding protei 99.7 1.6E-17 5.4E-22 127.8 9.7 80 247-328 24-107 (109)
176 2khc_A Testis-specific RNP-typ 99.7 2.1E-17 7.1E-22 129.3 10.6 80 42-121 35-118 (118)
177 2dhg_A TRNA selenocysteine ass 99.7 1.9E-17 6.4E-22 126.5 10.0 87 128-215 5-93 (104)
178 2dhg_A TRNA selenocysteine ass 99.7 2.8E-17 9.5E-22 125.5 10.9 80 251-332 8-94 (104)
179 1x4f_A Matrin 3; structural ge 99.7 3.1E-17 1.1E-21 125.0 11.0 81 43-125 21-104 (112)
180 2dh8_A DAZ-associated protein 99.7 1.9E-17 6.5E-22 126.7 9.9 88 127-215 11-98 (105)
181 3n9u_C Cleavage and polyadenyl 99.7 1.7E-17 5.7E-22 135.8 10.1 82 131-212 54-137 (156)
182 2cpe_A RNA-binding protein EWS 99.7 4.5E-17 1.5E-21 126.3 12.1 88 40-127 8-107 (113)
183 3p5t_L Cleavage and polyadenyl 99.7 3.2E-18 1.1E-22 126.9 5.3 76 253-330 2-85 (90)
184 1oo0_B CG8781-PA, drosophila Y 99.7 3.5E-17 1.2E-21 126.3 11.4 80 249-330 23-108 (110)
185 1s79_A Lupus LA protein; RRM, 99.7 1.6E-17 5.3E-22 125.9 9.2 82 128-211 7-88 (103)
186 3ulh_A THO complex subunit 4; 99.7 4E-17 1.4E-21 125.3 11.6 83 127-210 24-106 (107)
187 2rs2_A Musashi-1, RNA-binding 99.7 2.7E-17 9.4E-22 126.4 10.7 86 127-213 20-105 (109)
188 4a8x_A RNA-binding protein wit 99.7 2.5E-17 8.6E-22 121.7 10.1 82 131-212 3-85 (88)
189 2xnq_A Nuclear polyadenylated 99.7 5E-17 1.7E-21 122.1 11.8 77 248-328 18-95 (97)
190 1wi8_A EIF-4B, eukaryotic tran 99.7 3.3E-17 1.1E-21 125.0 11.1 89 37-127 5-98 (104)
191 2cqg_A TDP-43, TAR DNA-binding 99.7 8.1E-17 2.8E-21 122.6 13.1 88 126-215 9-96 (103)
192 3ucg_A Polyadenylate-binding p 99.7 3.1E-17 1.1E-21 121.4 10.4 80 132-212 6-85 (89)
193 2jvr_A Nucleolar protein 3; RN 99.7 1.4E-17 4.7E-22 127.5 8.7 79 46-124 27-106 (111)
194 3pgw_S U1-70K; protein-RNA com 99.7 4.3E-18 1.5E-22 162.6 7.2 149 64-213 9-183 (437)
195 1x4c_A Splicing factor, argini 99.7 6.4E-17 2.2E-21 124.2 12.3 80 44-126 12-96 (108)
196 1why_A Hypothetical protein ri 99.7 5.2E-17 1.8E-21 122.3 11.5 79 44-124 14-94 (97)
197 2jvo_A Nucleolar protein 3; nu 99.7 3E-17 1E-21 125.8 10.2 79 248-330 27-105 (108)
198 2do0_A HnRNP M, heterogeneous 99.7 1.2E-16 4.1E-21 124.1 13.7 85 128-213 11-95 (114)
199 2la6_A RNA-binding protein FUS 99.7 5.3E-17 1.8E-21 122.7 11.4 79 43-121 9-99 (99)
200 2m2b_A RNA-binding protein 10; 99.7 3.1E-17 1E-21 130.7 10.5 81 247-330 18-110 (131)
201 2dgp_A Bruno-like 4, RNA bindi 99.7 6.5E-17 2.2E-21 123.9 12.0 80 249-330 10-98 (106)
202 2dng_A Eukaryotic translation 99.7 9.6E-17 3.3E-21 122.2 12.8 78 250-331 13-96 (103)
203 1x5p_A Negative elongation fac 99.7 1.7E-16 5.7E-21 119.4 13.9 77 250-330 13-89 (97)
204 2dgv_A HnRNP M, heterogeneous 99.7 4.8E-17 1.6E-21 121.2 10.8 84 129-214 5-88 (92)
205 2xnq_A Nuclear polyadenylated 99.7 4.8E-17 1.7E-21 122.2 10.8 78 42-123 17-95 (97)
206 2a3j_A U1 small nuclear ribonu 99.7 4.5E-17 1.5E-21 128.0 11.0 79 249-329 26-111 (127)
207 2hvz_A Splicing factor, argini 99.7 3E-17 1E-21 124.5 9.8 77 253-331 1-78 (101)
208 2la4_A Nuclear and cytoplasmic 99.7 7.8E-18 2.7E-22 127.8 6.5 76 45-122 25-100 (101)
209 2ytc_A PRE-mRNA-splicing facto 99.7 3.8E-17 1.3E-21 119.8 10.0 78 42-121 7-85 (85)
210 2dgx_A KIAA0430 protein; RRM d 99.7 5.3E-17 1.8E-21 121.8 11.0 82 129-213 6-91 (96)
211 2div_A TRNA selenocysteine ass 99.7 3.8E-17 1.3E-21 123.5 10.2 79 250-330 7-96 (99)
212 2jvo_A Nucleolar protein 3; nu 99.7 3.8E-17 1.3E-21 125.3 10.2 79 43-125 27-105 (108)
213 2dgw_A Probable RNA-binding pr 99.7 1E-16 3.5E-21 119.1 12.1 83 128-213 6-88 (91)
214 2dgt_A RNA-binding protein 30; 99.7 8.2E-17 2.8E-21 119.9 11.6 82 42-127 5-86 (92)
215 2ek1_A RNA-binding protein 12; 99.7 2E-17 6.7E-22 124.1 8.2 81 130-210 13-93 (95)
216 1p1t_A Cleavage stimulation fa 99.7 2.4E-17 8.4E-22 125.8 8.9 83 131-213 7-89 (104)
217 2mss_A Protein (musashi1); RNA 99.7 1.1E-17 3.8E-22 119.5 6.5 75 134-209 1-75 (75)
218 2m2b_A RNA-binding protein 10; 99.7 1.7E-17 5.8E-22 132.2 7.9 86 127-213 18-109 (131)
219 1x4e_A RNA binding motif, sing 99.7 6.7E-18 2.3E-22 123.8 5.1 81 130-210 3-83 (85)
220 1x4g_A Nucleolysin TIAR; struc 99.7 6.5E-17 2.2E-21 124.5 10.9 83 43-127 21-103 (109)
221 3ucg_A Polyadenylate-binding p 99.7 6.9E-17 2.4E-21 119.5 10.5 75 252-329 6-86 (89)
222 2cpi_A CCR4-NOT transcription 99.7 8.2E-17 2.8E-21 124.2 11.3 78 251-330 14-103 (111)
223 2e5j_A Methenyltetrahydrofolat 99.7 6.1E-17 2.1E-21 121.8 10.3 78 249-329 16-95 (97)
224 1sjr_A Polypyrimidine tract-bi 99.7 7.8E-17 2.7E-21 130.5 11.5 82 44-125 43-126 (164)
225 2dnp_A RNA-binding protein 14; 99.7 7.6E-17 2.6E-21 119.5 10.6 80 43-126 5-84 (90)
226 3ex7_B RNA-binding protein 8A; 99.7 5.6E-17 1.9E-21 128.4 10.5 89 127-215 17-105 (126)
227 2kt5_A RNA and export factor-b 99.7 2.6E-16 8.9E-21 124.1 14.3 81 248-330 31-116 (124)
228 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.5E-17 5.1E-22 125.9 6.7 84 127-212 14-98 (100)
229 1nu4_A U1A RNA binding domain; 99.7 8.1E-17 2.8E-21 121.2 10.8 78 250-329 6-90 (97)
230 2kt5_A RNA and export factor-b 99.7 1.5E-16 5.1E-21 125.5 12.7 86 128-214 31-116 (124)
231 2dis_A Unnamed protein product 99.7 6.3E-17 2.1E-21 124.7 10.2 87 129-215 5-95 (109)
232 2dis_A Unnamed protein product 99.7 1.6E-16 5.3E-21 122.4 12.3 79 251-331 7-95 (109)
233 3ulh_A THO complex subunit 4; 99.7 9.7E-17 3.3E-21 123.1 11.1 77 248-326 25-106 (107)
234 2e44_A Insulin-like growth fac 99.7 8.1E-17 2.8E-21 121.0 10.5 82 43-124 11-93 (96)
235 3ex7_B RNA-binding protein 8A; 99.7 6.6E-17 2.2E-21 128.0 10.5 82 248-331 18-105 (126)
236 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.2E-16 4E-21 131.5 12.3 87 128-214 35-121 (156)
237 1wf1_A RNA-binding protein RAL 99.7 1.9E-16 6.4E-21 122.1 12.6 76 251-330 26-102 (110)
238 2a3j_A U1 small nuclear ribonu 99.7 7.9E-17 2.7E-21 126.5 10.4 82 44-125 26-112 (127)
239 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.7E-17 5.8E-22 125.6 6.3 83 40-124 12-99 (100)
240 3ns6_A Eukaryotic translation 99.7 2.8E-17 9.5E-22 124.3 7.3 74 252-327 6-92 (100)
241 2e5i_A Heterogeneous nuclear r 99.7 2.9E-16 1E-20 122.1 13.2 75 253-329 26-103 (124)
242 2cqp_A RNA-binding protein 12; 99.7 1E-16 3.6E-21 120.9 10.4 82 42-123 10-95 (98)
243 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.1E-17 7.1E-22 118.8 6.2 76 133-209 1-76 (77)
244 2kvi_A Nuclear polyadenylated 99.7 4.4E-17 1.5E-21 122.3 8.3 78 250-331 8-86 (96)
245 1x4b_A Heterogeneous nuclear r 99.7 1.2E-16 4E-21 124.6 10.9 83 131-214 26-108 (116)
246 2dh8_A DAZ-associated protein 99.7 8.9E-17 3E-21 122.9 10.1 79 249-330 13-97 (105)
247 2fc9_A NCL protein; structure 99.7 7.6E-17 2.6E-21 122.3 9.6 85 40-127 8-95 (101)
248 1wf1_A RNA-binding protein RAL 99.7 9.7E-17 3.3E-21 123.7 10.3 95 111-213 6-101 (110)
249 1p1t_A Cleavage stimulation fa 99.7 2.9E-17 9.8E-22 125.5 7.2 77 251-329 7-89 (104)
250 2dgu_A Heterogeneous nuclear r 99.7 1.6E-16 5.4E-21 121.0 11.2 79 44-126 8-86 (103)
251 2cpd_A Apobec-1 stimulating pr 99.7 2.9E-16 9.8E-21 118.6 12.6 80 42-125 10-91 (99)
252 1sjr_A Polypyrimidine tract-bi 99.7 1.4E-16 4.8E-21 129.1 11.3 76 252-329 46-125 (164)
253 2cpy_A RNA-binding protein 12; 99.7 7.5E-17 2.6E-21 125.1 9.4 83 128-212 11-94 (114)
254 2fc9_A NCL protein; structure 99.7 2.7E-16 9.1E-21 119.3 12.2 78 249-331 12-94 (101)
255 2diu_A KIAA0430 protein; struc 99.7 2.1E-16 7.3E-21 113.9 10.8 75 251-330 7-86 (96)
256 1s79_A Lupus LA protein; RRM, 99.7 6.4E-17 2.2E-21 122.5 8.6 74 251-327 10-88 (103)
257 2cpi_A CCR4-NOT transcription 99.7 9.7E-17 3.3E-21 123.8 9.6 85 129-213 12-102 (111)
258 2kvi_A Nuclear polyadenylated 99.7 1.1E-16 3.8E-21 120.1 9.7 79 43-125 6-85 (96)
259 2cq4_A RNA binding motif prote 99.7 7.6E-17 2.6E-21 125.2 9.0 81 131-212 24-104 (114)
260 1wg5_A Heterogeneous nuclear r 99.7 1.5E-16 5E-21 121.3 10.4 83 128-212 11-94 (104)
261 1x5p_A Negative elongation fac 99.7 3.4E-16 1.2E-20 117.7 12.2 87 37-127 5-91 (97)
262 2cpx_A Hypothetical protein FL 99.7 3E-16 1E-20 122.1 12.2 86 43-128 21-110 (115)
263 2ki2_A SS-DNA binding protein 99.7 1.1E-17 3.9E-22 124.0 3.9 80 133-213 2-81 (90)
264 3s7r_A Heterogeneous nuclear r 99.7 1.2E-16 4.1E-21 117.6 9.4 79 41-120 5-87 (87)
265 3n9u_C Cleavage and polyadenyl 99.7 7.1E-17 2.4E-21 132.1 8.8 79 45-123 53-137 (156)
266 2cqh_A IGF-II mRNA-binding pro 99.7 1.3E-16 4.5E-21 119.0 9.5 80 44-126 5-86 (93)
267 1x5o_A RNA binding motif, sing 99.7 2.1E-16 7.3E-21 122.7 11.0 84 128-212 21-112 (114)
268 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.5E-16 5.2E-21 128.4 10.5 83 127-209 58-140 (140)
269 2nlw_A Eukaryotic translation 99.7 1.1E-16 3.9E-21 122.1 9.2 83 128-212 11-100 (105)
270 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.3E-16 1.1E-20 128.8 12.5 79 250-330 37-121 (156)
271 2hgl_A HNRPF protein, heteroge 99.7 9.9E-17 3.4E-21 127.5 8.9 82 128-211 40-124 (136)
272 2db1_A Heterogeneous nuclear r 99.7 1.5E-16 5.2E-21 124.0 9.8 83 128-212 13-98 (118)
273 1wez_A HnRNP H', FTP-3, hetero 99.7 1.3E-16 4.3E-21 120.9 8.8 83 128-213 11-93 (102)
274 2rs2_A Musashi-1, RNA-binding 99.7 2.9E-16 9.8E-21 120.6 10.8 80 248-330 21-106 (109)
275 3zzy_A Polypyrimidine tract-bi 99.7 3.4E-16 1.2E-20 122.1 11.3 77 251-329 27-107 (130)
276 2cpx_A Hypothetical protein FL 99.7 4.6E-16 1.6E-20 121.0 12.0 81 249-331 22-108 (115)
277 1x4e_A RNA binding motif, sing 99.7 3.5E-17 1.2E-21 120.0 5.3 74 251-326 4-83 (85)
278 2cqg_A TDP-43, TAR DNA-binding 99.7 1.1E-15 3.6E-20 116.4 13.8 78 250-331 13-96 (103)
279 2cq4_A RNA binding motif prote 99.7 4.5E-17 1.5E-21 126.5 6.1 77 250-329 23-105 (114)
280 2diu_A KIAA0430 protein; struc 99.7 3.9E-16 1.3E-20 112.5 10.4 77 46-128 7-89 (96)
281 2ek1_A RNA-binding protein 12; 99.7 9.9E-17 3.4E-21 120.2 7.7 78 44-121 12-93 (95)
282 2nlw_A Eukaryotic translation 99.7 2.6E-16 8.7E-21 120.1 10.0 76 251-328 14-100 (105)
283 2jwn_A Embryonic polyadenylate 99.7 3.1E-16 1.1E-20 123.7 10.8 76 252-330 36-117 (124)
284 1whx_A Hypothetical protein ri 99.7 1.5E-16 5.1E-21 122.6 8.7 78 45-124 8-85 (111)
285 1x5o_A RNA binding motif, sing 99.7 6.2E-16 2.1E-20 120.1 12.2 78 249-328 22-112 (114)
286 2fc8_A NCL protein; structure 99.7 6E-16 2.1E-20 117.6 11.8 86 126-214 9-94 (102)
287 1wel_A RNA-binding protein 12; 99.7 7.2E-17 2.5E-21 127.3 6.8 84 128-212 21-104 (124)
288 2cpy_A RNA-binding protein 12; 99.7 1.9E-16 6.5E-21 122.8 9.1 81 42-123 10-94 (114)
289 2e5g_A U6 snRNA-specific termi 99.7 6E-16 2E-20 115.6 11.5 77 251-330 7-84 (94)
290 1wg5_A Heterogeneous nuclear r 99.7 4.1E-16 1.4E-20 118.7 10.7 83 41-124 9-95 (104)
291 1x4b_A Heterogeneous nuclear r 99.7 3E-16 1E-20 122.2 10.1 79 250-331 25-109 (116)
292 2fc8_A NCL protein; structure 99.7 7.3E-16 2.5E-20 117.1 12.0 81 249-331 12-95 (102)
293 1wg1_A KIAA1579 protein, homol 99.7 4E-16 1.4E-20 115.0 10.2 75 252-329 5-79 (88)
294 1iqt_A AUF1, heterogeneous nuc 99.7 4.6E-17 1.6E-21 116.3 4.9 75 134-209 1-75 (75)
295 2dgw_A Probable RNA-binding pr 99.7 5.2E-16 1.8E-20 115.2 10.8 80 43-124 6-88 (91)
296 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7.5E-16 2.6E-20 124.3 12.6 76 248-325 59-140 (140)
297 1nu4_A U1A RNA binding domain; 99.7 1.7E-16 5.9E-21 119.4 8.0 81 44-124 5-90 (97)
298 2dnn_A RNA-binding protein 12; 99.7 3E-16 1E-20 119.8 9.3 78 131-211 15-92 (109)
299 3beg_B Splicing factor, argini 99.7 3.5E-16 1.2E-20 121.4 9.8 77 251-330 15-96 (115)
300 1fjc_A Nucleolin RBD2, protein 99.7 4.2E-16 1.4E-20 117.0 9.9 80 249-330 13-93 (96)
301 1fj7_A Nucleolin RBD1, protein 99.7 3.8E-17 1.3E-21 124.0 4.1 84 128-213 13-96 (101)
302 3pgw_S U1-70K; protein-RNA com 99.7 6.2E-17 2.1E-21 154.5 6.5 79 250-330 100-184 (437)
303 2e44_A Insulin-like growth fac 99.7 8.1E-16 2.8E-20 115.4 11.3 77 251-329 14-93 (96)
304 2mss_A Protein (musashi1); RNA 99.7 1.3E-16 4.5E-21 113.9 6.6 69 254-325 1-75 (75)
305 2ki2_A SS-DNA binding protein 99.7 5E-17 1.7E-21 120.6 4.5 75 253-330 2-82 (90)
306 2krb_A Eukaryotic translation 99.7 1.1E-16 3.6E-21 116.2 6.1 72 133-206 2-80 (81)
307 1fj7_A Nucleolin RBD1, protein 99.7 2E-16 6.9E-21 120.0 8.0 77 250-330 15-97 (101)
308 2hzc_A Splicing factor U2AF 65 99.7 5.6E-16 1.9E-20 114.0 9.9 73 251-324 5-86 (87)
309 2lmi_A GRSF-1, G-rich sequence 99.7 1.1E-16 3.7E-21 122.7 6.2 83 127-211 6-91 (107)
310 2j8a_A Histone-lysine N-methyl 99.7 2.8E-16 9.5E-21 119.9 8.3 80 133-212 3-96 (136)
311 2db1_A Heterogeneous nuclear r 99.7 4.3E-16 1.5E-20 121.4 9.5 80 42-122 12-97 (118)
312 1wez_A HnRNP H', FTP-3, hetero 99.6 6.4E-16 2.2E-20 117.0 9.9 81 42-124 10-93 (102)
313 2cq2_A Hypothetical protein LO 99.6 5.4E-16 1.9E-20 118.2 9.4 78 44-123 22-106 (114)
314 1wg1_A KIAA1579 protein, homol 99.6 6.3E-16 2.2E-20 113.9 9.5 77 45-124 3-79 (88)
315 2hgn_A Heterogeneous nuclear r 99.6 7.3E-17 2.5E-21 128.7 4.6 123 86-213 2-124 (139)
316 3zzy_A Polypyrimidine tract-bi 99.6 9.8E-16 3.3E-20 119.5 10.9 79 46-125 27-108 (130)
317 3q2s_C Cleavage and polyadenyl 99.6 2.4E-16 8.3E-21 137.5 8.3 82 131-212 67-150 (229)
318 2e5i_A Heterogeneous nuclear r 99.6 2.1E-15 7.2E-20 117.2 12.6 76 48-125 26-104 (124)
319 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.4E-16 8.2E-21 113.2 6.8 72 48-120 1-76 (77)
320 1fjc_A Nucleolin RBD2, protein 99.6 2.8E-16 9.7E-21 118.0 7.4 82 43-125 12-93 (96)
321 2krb_A Eukaryotic translation 99.6 2.2E-16 7.6E-21 114.4 6.4 69 253-323 2-81 (81)
322 2e5g_A U6 snRNA-specific termi 99.6 9.2E-16 3.1E-20 114.6 9.5 79 44-125 5-84 (94)
323 2dha_A FLJ20171 protein; RRM d 99.6 4.4E-16 1.5E-20 121.5 7.8 80 130-211 21-104 (123)
324 2hgl_A HNRPF protein, heteroge 99.6 7.1E-16 2.4E-20 122.5 9.1 80 42-122 39-124 (136)
325 3d2w_A TAR DNA-binding protein 99.6 1.4E-15 4.7E-20 112.1 10.0 74 250-329 9-85 (89)
326 2bz2_A Negative elongation fac 99.6 8.1E-16 2.8E-20 120.2 9.2 77 250-330 37-113 (121)
327 2lcw_A RNA-binding protein FUS 99.4 2.2E-17 7.5E-22 128.7 0.0 86 129-214 4-97 (116)
328 2xs2_A Deleted in azoospermia- 99.6 3.4E-16 1.2E-20 118.9 6.0 81 130-213 7-87 (102)
329 2bz2_A Negative elongation fac 99.6 2.6E-15 8.8E-20 117.3 10.8 80 42-125 34-113 (121)
330 2lmi_A GRSF-1, G-rich sequence 99.6 5.8E-16 2E-20 118.6 7.0 80 42-122 6-91 (107)
331 3u1l_A PRE-mRNA-splicing facto 99.6 1E-15 3.5E-20 132.6 9.1 80 249-330 131-231 (240)
332 2f3j_A RNA and export factor b 99.6 1.6E-15 5.3E-20 126.9 9.7 83 129-212 85-167 (177)
333 2hgm_A HNRPF protein, heteroge 99.6 6.7E-16 2.3E-20 120.7 6.9 81 128-211 38-120 (126)
334 1wel_A RNA-binding protein 12; 99.6 1.3E-15 4.6E-20 119.9 8.7 79 43-122 21-103 (124)
335 3beg_B Splicing factor, argini 99.6 1.3E-15 4.6E-20 118.1 8.3 77 45-124 14-95 (115)
336 2dnn_A RNA-binding protein 12; 99.6 1.7E-15 5.7E-20 115.7 8.5 77 44-122 13-92 (109)
337 3d2w_A TAR DNA-binding protein 99.6 2E-15 6.7E-20 111.3 8.6 76 44-124 8-85 (89)
338 2lcw_A RNA-binding protein FUS 99.4 6.1E-17 2.1E-21 126.2 0.0 80 250-331 5-98 (116)
339 1wf0_A TDP-43, TAR DNA-binding 99.6 1.8E-15 6E-20 111.6 7.9 75 252-330 5-80 (88)
340 3q2s_C Cleavage and polyadenyl 99.6 1.4E-15 4.7E-20 132.8 8.4 75 251-327 67-149 (229)
341 2hzc_A Splicing factor U2AF 65 99.6 1.8E-15 6.2E-20 111.3 7.8 73 44-119 3-86 (87)
342 3egn_A RNA-binding protein 40; 99.6 2.2E-15 7.6E-20 121.9 8.8 80 249-330 42-132 (143)
343 1iqt_A AUF1, heterogeneous nuc 99.6 6.7E-16 2.3E-20 110.1 5.0 69 254-325 1-75 (75)
344 2f3j_A RNA and export factor b 99.6 4.6E-15 1.6E-19 124.0 10.6 82 43-124 84-168 (177)
345 1wf0_A TDP-43, TAR DNA-binding 99.6 1.5E-15 5E-20 112.0 6.5 80 45-127 3-82 (88)
346 3egn_A RNA-binding protein 40; 99.6 5.2E-15 1.8E-19 119.7 10.0 83 44-126 42-133 (143)
347 2xs2_A Deleted in azoospermia- 99.6 1.9E-15 6.4E-20 114.8 6.6 75 251-329 8-87 (102)
348 2voo_A Lupus LA protein; RNA-b 99.6 1E-14 3.4E-19 123.9 11.8 117 94-212 63-187 (193)
349 2hgn_A Heterogeneous nuclear r 99.6 1.3E-15 4.4E-20 121.4 4.8 80 43-124 42-124 (139)
350 2dha_A FLJ20171 protein; RRM d 99.6 2.8E-15 9.6E-20 116.9 6.6 76 45-121 21-103 (123)
351 2dit_A HIV TAT specific factor 99.6 3.9E-14 1.3E-18 109.3 12.5 85 41-125 9-104 (112)
352 2hgm_A HNRPF protein, heteroge 99.6 3.8E-15 1.3E-19 116.4 6.8 78 43-122 38-120 (126)
353 2pe8_A Splicing factor 45; RRM 99.6 2.3E-14 8E-19 108.6 11.0 82 130-211 6-93 (105)
354 2pe8_A Splicing factor 45; RRM 99.6 2E-14 6.9E-19 108.9 10.6 76 250-327 6-93 (105)
355 2dnl_A Cytoplasmic polyadenyla 99.6 1.4E-14 5E-19 112.1 9.9 78 129-209 5-85 (114)
356 2voo_A Lupus LA protein; RNA-b 99.5 9.2E-14 3.1E-18 117.9 13.4 74 252-328 109-187 (193)
357 3u1l_A PRE-mRNA-splicing facto 99.5 3.3E-14 1.1E-18 123.2 9.4 80 43-124 130-230 (240)
358 2dit_A HIV TAT specific factor 99.5 1.5E-13 5.1E-18 106.0 12.1 79 250-330 13-104 (112)
359 2dnl_A Cytoplasmic polyadenyla 99.5 5.3E-14 1.8E-18 108.9 9.5 74 44-120 5-85 (114)
360 2j8a_A Histone-lysine N-methyl 99.5 3.2E-14 1.1E-18 108.6 7.1 72 253-326 3-94 (136)
361 3v4m_A Splicing factor U2AF 65 99.5 1.1E-13 3.9E-18 104.8 9.5 75 250-326 3-95 (105)
362 2d9o_A DNAJ (HSP40) homolog, s 99.5 1E-12 3.5E-17 98.2 12.5 74 253-330 11-92 (100)
363 3v4m_A Splicing factor U2AF 65 99.5 2.7E-13 9.1E-18 102.8 9.4 82 130-211 3-96 (105)
364 3ue2_A Poly(U)-binding-splicin 99.4 3.4E-13 1.2E-17 104.2 9.5 80 131-210 19-107 (118)
365 3tht_A Alkylated DNA repair pr 99.4 3.1E-13 1.1E-17 123.5 10.9 79 246-326 12-97 (345)
366 1jmt_A Splicing factor U2AF 35 99.4 1.4E-13 4.7E-18 104.2 5.9 72 137-209 20-103 (104)
367 3ue2_A Poly(U)-binding-splicin 99.4 7.9E-13 2.7E-17 102.1 9.6 74 251-326 19-107 (118)
368 3s6e_A RNA-binding protein 39; 99.4 1.1E-12 3.6E-17 100.6 9.0 75 251-327 6-92 (114)
369 1jmt_A Splicing factor U2AF 35 99.4 2.1E-13 7.1E-18 103.2 4.8 67 257-325 20-103 (104)
370 2d9o_A DNAJ (HSP40) homolog, s 99.4 6.4E-12 2.2E-16 93.8 12.0 77 46-125 9-92 (100)
371 3s6e_A RNA-binding protein 39; 99.4 3.1E-12 1E-16 98.0 9.9 77 45-121 5-91 (114)
372 2dnr_A Synaptojanin-1; RRM dom 99.3 1.2E-11 4.1E-16 88.3 9.6 77 248-329 3-87 (91)
373 3tht_A Alkylated DNA repair pr 99.3 6.6E-12 2.3E-16 114.8 8.9 77 43-121 14-97 (345)
374 1owx_A Lupus LA protein, SS-B, 99.2 8E-11 2.7E-15 90.1 10.4 79 245-325 11-93 (121)
375 1ufw_A Synaptojanin 2; RNP dom 99.2 6.7E-11 2.3E-15 84.8 7.2 76 246-326 9-93 (95)
376 2dnr_A Synaptojanin-1; RRM dom 99.0 8.3E-10 2.9E-14 78.8 7.6 73 47-124 7-87 (91)
377 1owx_A Lupus LA protein, SS-B, 99.0 1.6E-09 5.4E-14 82.9 9.6 77 43-121 14-94 (121)
378 3dxb_A Thioredoxin N-terminall 98.9 8E-09 2.7E-13 89.7 11.9 67 144-210 141-211 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.9 3.1E-09 1E-13 76.2 5.8 71 46-121 14-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.8 1.4E-08 4.9E-13 88.1 7.6 61 264-326 141-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.7 6.9E-08 2.4E-12 70.5 9.3 71 253-323 22-95 (117)
382 2dhx_A Poly (ADP-ribose) polym 98.7 7.5E-07 2.6E-11 64.6 13.6 86 252-340 8-96 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.6 2.4E-07 8.1E-12 67.7 9.4 73 44-118 18-95 (117)
384 2dhx_A Poly (ADP-ribose) polym 98.5 1.1E-06 3.9E-11 63.7 10.5 89 45-145 6-99 (104)
385 1wey_A Calcipressin 1; structu 98.5 1.1E-06 3.7E-11 64.2 9.7 73 253-327 6-83 (104)
386 1wey_A Calcipressin 1; structu 98.0 2.9E-05 1E-09 56.7 7.6 75 46-122 4-83 (104)
387 1whv_A Poly(A)-specific ribonu 97.8 0.00013 4.3E-09 52.3 8.1 57 45-106 14-70 (100)
388 1uw4_A UPF3X; nonsense mediate 97.6 0.00017 5.9E-09 51.7 7.1 65 48-112 2-72 (91)
389 1uw4_A UPF3X; nonsense mediate 97.5 0.00039 1.3E-08 49.9 7.4 62 253-316 2-71 (91)
390 1wwh_A Nucleoporin 35, nucleop 97.4 0.001 3.4E-08 50.1 8.4 74 44-121 21-95 (119)
391 1wwh_A Nucleoporin 35, nucleop 97.4 0.0013 4.4E-08 49.5 9.0 71 252-326 24-95 (119)
392 3ctr_A Poly(A)-specific ribonu 97.3 0.00022 7.7E-09 51.2 3.8 53 49-106 8-60 (101)
393 1whv_A Poly(A)-specific ribonu 97.1 0.0029 9.9E-08 45.3 8.5 54 253-311 17-70 (100)
394 2l08_A Regulator of nonsense t 96.7 0.0012 4E-08 47.7 3.4 66 47-112 9-80 (97)
395 2l08_A Regulator of nonsense t 96.6 0.0024 8.1E-08 46.1 4.6 63 253-317 10-80 (97)
396 3ctr_A Poly(A)-specific ribonu 96.6 0.0032 1.1E-07 45.2 5.1 54 253-311 7-60 (101)
397 3p3d_A Nucleoporin 53; structu 96.6 0.0026 9E-08 48.4 4.7 72 48-121 8-97 (132)
398 3pq1_A Poly(A) RNA polymerase; 96.5 0.0013 4.6E-08 62.1 3.7 54 48-103 54-107 (464)
399 3p3d_A Nucleoporin 53; structu 96.3 0.0055 1.9E-07 46.7 4.9 70 253-326 8-97 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.7 0.0057 2E-07 57.8 3.4 54 253-309 54-108 (464)
401 3d45_A Poly(A)-specific ribonu 88.8 1.3 4.3E-05 42.7 8.3 56 47-107 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 76.3 8.4 0.00029 37.0 8.4 55 252-311 440-494 (507)
403 2g0c_A ATP-dependent RNA helic 66.2 6.5 0.00022 26.5 3.8 61 263-326 12-75 (76)
404 4eyt_A Telomerase associated p 58.2 43 0.0015 23.1 7.9 56 131-194 11-66 (129)
405 2g0c_A ATP-dependent RNA helic 53.8 21 0.00072 23.8 4.6 58 58-120 12-74 (76)
406 4e8u_A Putative uncharacterize 46.3 44 0.0015 26.6 5.9 49 253-301 13-73 (172)
407 4eyt_A Telomerase associated p 43.8 77 0.0026 21.8 8.4 68 45-118 10-77 (129)
408 4e8u_A Putative uncharacterize 42.0 45 0.0015 26.5 5.3 48 134-184 14-72 (172)
409 4a4j_A Pacszia, cation-transpo 30.8 82 0.0028 19.7 4.6 55 253-309 4-61 (69)
410 3ts2_A Protein LIN-28 homolog 28.2 19 0.00066 28.0 1.1 28 267-298 2-29 (148)
411 3dxs_X Copper-transporting ATP 27.5 1.2E+02 0.0041 19.2 6.7 55 253-309 4-62 (74)
412 2inr_A DNA topoisomerase 4 sub 26.6 2.3E+02 0.0077 27.0 8.2 95 47-155 275-375 (514)
413 3fry_A Probable copper-exporti 25.5 1.3E+02 0.0046 19.1 6.0 55 48-105 7-61 (73)
414 2cu1_A Mitogen-activated prote 20.8 2.3E+02 0.008 20.1 5.8 65 257-326 21-86 (103)
415 1x66_A Friend leukemia integra 20.7 45 0.0015 23.8 1.8 35 35-69 3-37 (98)
416 2w7a_A LINE-1 ORF1P; RNA-bindi 20.3 2.4E+02 0.0082 20.1 5.5 72 47-118 3-98 (100)
417 2ki0_A DS119; beta-alpha-beta, 20.1 22 0.00075 18.9 0.0 12 46-57 4-15 (36)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3.7e-47 Score=347.54 Aligned_cols=240 Identities=21% Similarity=0.329 Sum_probs=219.5
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCC
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~ 124 (412)
+++++|||+|||.++|+++|+++|+.|| |.+|.+ .+++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~--- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV--DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP--- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE--ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC---
Confidence 3578999999999999999999999999 998887 6678899999999999999999999999999999999864
Q ss_pred CCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 015149 125 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (412)
Q Consensus 125 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 204 (412)
...+|||+|||+++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|+..+++..++|+.|
T Consensus 94 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 ------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp ------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 33589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCC-CHHHHHHHHhhcCcccEEE
Q 015149 205 RCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEV-TSVDLHRHFHALCVGTIED 283 (412)
Q Consensus 205 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~-t~~~L~~~F~~~~~G~v~~ 283 (412)
.|.++.++.... .....++|||+|||..+ ++++|+++|+.| |.|.+
T Consensus 168 ~v~~a~~~~~~~-------------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~--G~i~~ 214 (284)
T 3smz_A 168 YVHWTDAGQLTP-------------------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAV--HSPTF 214 (284)
T ss_dssp EEEECCGGGCCT-------------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSS--SCCSE
T ss_pred EEEECCCCCCCc-------------------------------ccCCccEEEEecCCcccCCHHHHHHHhhCC--CCeEE
Confidence 999986542211 11334889999999995 999999999999 99999
Q ss_pred EEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 284 VRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 284 v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
+++.++ +|+|||+|.+.++|.+|+..|||..|+|++|+|.|++++.
T Consensus 215 v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 215 CQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp EEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred EEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 999886 8999999999999999999999999999999999986543
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.4e-46 Score=342.46 Aligned_cols=245 Identities=17% Similarity=0.234 Sum_probs=210.1
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC--CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEe
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~--~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~ 119 (412)
....+.++|||+|||+++|+++|+++|+.||+|.+|++++++ ++|||||+|.+.++|.+|+ .+++..+.|+.|.|.+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSH 114 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEE
Confidence 355778999999999999999999999999999999998864 4689999999999999999 5999999999999998
Q ss_pred cccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCC-CeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCce
Q 015149 120 AYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFP-TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (412)
Q Consensus 120 ~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G-~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~ 198 (412)
+ ..++|||+|||+++++++|+++|+.|| .|.+++++.++. |.++|||||+|.+.++|..|+..+++..
T Consensus 115 ~----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~ 183 (292)
T 2ghp_A 115 L----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLK 183 (292)
T ss_dssp C----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCE
T ss_pred C----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 6 356899999999999999999999999 999999998854 7899999999999999999999999999
Q ss_pred eCCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCC-CCHHHHHHHHhhcC
Q 015149 199 LGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSE-VTSVDLHRHFHALC 277 (412)
Q Consensus 199 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~-~t~~~L~~~F~~~~ 277 (412)
+.|+.|.|.++.+....... .....+.++|||+|||.. +++++|+++|+.|
T Consensus 184 ~~g~~l~v~~a~~~~~~~~~---------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~- 235 (292)
T 2ghp_A 184 IEGYTLVTKVSNPLEKSKRT---------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGF- 235 (292)
T ss_dssp ETTEECEEEECCCC------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGG-
T ss_pred eCCcEEEEEECCCCcccccc---------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhcc-
Confidence 99999999998755322211 112334589999999999 9999999999999
Q ss_pred cccEEEEEeecc-------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCC
Q 015149 278 VGTIEDVRVQRD-------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328 (412)
Q Consensus 278 ~G~v~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~ 328 (412)
|.|.+|++.++ +|+|||+|.+.++|.+|+ .|||..|+|+.|+|.|++++
T Consensus 236 -G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 236 -GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred -CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999999764 689999999999999999 99999999999999999865
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.4e-34 Score=252.31 Aligned_cols=166 Identities=28% Similarity=0.457 Sum_probs=149.3
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
..+.++|||+|||+++++++|+++|++||+|.+|++++|+.+++++|||||+|.+.++|.+|++.+++..+.|+.+++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeec
Q 015149 209 AAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR 288 (412)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~ 288 (412)
+....... .....+|||+|||..+|+++|+++|+.| |.|.+|+|++
T Consensus 92 ~~~~~~~~--------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~~~i~~ 137 (213)
T 4f02_A 92 SQRDPSLR--------------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAF--GNILSCKVVC 137 (213)
T ss_dssp CCCCTHHH--------------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEE
T ss_pred cccccccc--------------------------------ccccccceECCcccccHHHHHHHHHhhc--CCeEEEEeec
Confidence 75432110 0112689999999999999999999999 9999999987
Q ss_pred c----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCC
Q 015149 289 D----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328 (412)
Q Consensus 289 ~----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~ 328 (412)
| +|||||+|.+.++|.+|++.|||..|+|++|+|.|++++
T Consensus 138 d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 138 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp ETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred cCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 6 789999999999999999999999999999999999764
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4e-34 Score=249.40 Aligned_cols=169 Identities=30% Similarity=0.551 Sum_probs=148.5
Q ss_pred CCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeE
Q 015149 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (412)
Q Consensus 41 ~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~ 116 (412)
.....+.+||||+|||+++|+++|+++|++||+|.+|++++++ ++|||||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 9 ~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~ 88 (213)
T 4f02_A 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR 88 (213)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccc
Confidence 3334567899999999999999999999999999999999865 367999999999999999999999999999999
Q ss_pred EEecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 015149 117 VNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 196 (412)
Q Consensus 117 v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~ 196 (412)
+.++...... ......+|||+|||+++++++|+++|+.||.|.+++++.|+ +.++|||||+|.+.++|.+|++.|||
T Consensus 89 ~~~~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 89 IMWSQRDPSL-RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp EEECCCCTHH-HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cccccccccc-cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 9998654422 22345689999999999999999999999999999999885 45799999999999999999999999
Q ss_pred ceeCCeEEEEEEccCC
Q 015149 197 KWLGNRQIRCNWAAKG 212 (412)
Q Consensus 197 ~~~~g~~l~v~~~~~~ 212 (412)
..|+|+.|.|.++.++
T Consensus 166 ~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 166 MLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CEETTEECEEEECCCH
T ss_pred CEECCEEEEEEEcCCC
Confidence 9999999999998654
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=236.66 Aligned_cols=162 Identities=43% Similarity=0.812 Sum_probs=152.1
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC---CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCC
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~---~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~ 124 (412)
|+|||+|||.++|+++|+++|++||+|.+|.+.+++ ++|||||+|.+.++|.+|++.+++..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 689999999999999999999999999999998775 46899999999999999999999999999999999997665
Q ss_pred CCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 015149 125 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (412)
Q Consensus 125 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 204 (412)
. ......++|||+|||.++++++|+++|+.||.|.++.+..++.+|.++|+|||+|.+.++|.+|+..|+|..++|+.|
T Consensus 81 ~-~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 81 Q-SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp C-CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred C-CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 4 344567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcc
Q 015149 205 RCNWAA 210 (412)
Q Consensus 205 ~v~~~~ 210 (412)
.|.|+.
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999985
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=5e-33 Score=233.48 Aligned_cols=161 Identities=26% Similarity=0.476 Sum_probs=150.4
Q ss_pred CCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc
Q 015149 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~ 121 (412)
++++|||+|||+++++++|+++|+.||+|.+|.+++++ ++|||||+|.+.++|.+|++.+++..+.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999998875 36899999999999999999999999999999999997
Q ss_pred cCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 015149 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (412)
Q Consensus 122 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g 201 (412)
+.. .....++|||+|||.++++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|.+|++.|+|..+.|
T Consensus 82 ~~~---~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 82 PGG---ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp CCS---STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCc---ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 654 34556899999999999999999999999999999999998899999999999999999999999999999987
Q ss_pred --eEEEEEEc
Q 015149 202 --RQIRCNWA 209 (412)
Q Consensus 202 --~~l~v~~~ 209 (412)
++|.|+|+
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999885
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=8.7e-33 Score=232.01 Aligned_cols=159 Identities=34% Similarity=0.527 Sum_probs=147.3
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
++++|||+|||+++++++|+++|+.||+|.+++++.++.+|+++|||||+|.+.++|..|++.+++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46789999999999999999999999999999999999899999999999999999999999999999999999999986
Q ss_pred CCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-
Q 015149 211 KGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD- 289 (412)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~- 289 (412)
+... ..+.++|||+|||..+++++|+++|++| |.|.++++.++
T Consensus 82 ~~~~----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~ 125 (168)
T 1b7f_A 82 PGGE----------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKY--GSIVQKNILRDK 125 (168)
T ss_dssp CCSS----------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSS--SCEEEEEEEECT
T ss_pred CCcc----------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcC--CcEEEEEEEEcC
Confidence 5421 1223789999999999999999999999 99999999876
Q ss_pred -----ccEEEEEeCCHHHHHHHHHHcCCCeeCC--eeeEEEec
Q 015149 290 -----KGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWG 325 (412)
Q Consensus 290 -----kg~afV~f~~~~~A~~A~~~l~g~~l~g--~~l~V~~a 325 (412)
+|+|||+|.+.++|.+|++.|||..|.| ++|+|.||
T Consensus 126 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 126 LTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 4899999999999999999999999988 99999986
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=230.71 Aligned_cols=160 Identities=26% Similarity=0.523 Sum_probs=145.4
Q ss_pred ceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
++|||+|||+++++++|+++|+.||+|.+++++.++ +++++|||||+|.+.++|..|++.+++..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 579999999999999999999999999999999885 4789999999999999999999999999999999999998654
Q ss_pred CCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc---
Q 015149 213 ATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--- 289 (412)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~--- 289 (412)
... ...+..+|||+|||..+++++|+++|+.| |.|.++.+.++
T Consensus 80 ~~~--------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~ 125 (166)
T 3md3_A 80 QQS--------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQT 125 (166)
T ss_dssp CCC--------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTS--TTEEEEEEEECTTT
T ss_pred CCC--------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhcc--CCeeEEEEEecCCC
Confidence 221 12234799999999999999999999999 99999999866
Q ss_pred ---ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCC
Q 015149 290 ---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327 (412)
Q Consensus 290 ---kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~ 327 (412)
+|+|||+|.+.++|.+|++.|||..|+|+.|+|.|+++
T Consensus 126 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 126 GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 68999999999999999999999999999999999863
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=7.4e-33 Score=238.56 Aligned_cols=173 Identities=17% Similarity=0.346 Sum_probs=148.8
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC----CCEEEEEecCHHHHHHHHHHhCCCccCCceeEE
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~----~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v 117 (412)
.+..+.++|||+|||+++|+++|+++|+.||+|.+|.+++++. +|||||+|.+.++|.+|++ +++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeee
Confidence 3556789999999999999999999999999999999998753 6799999999999999995 5999999999999
Q ss_pred EecccCCCCc---CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh
Q 015149 118 NWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194 (412)
Q Consensus 118 ~~~~~~~~~~---~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l 194 (412)
.++....... .....++|||+|||+++++++|+++|+.||.|..++++.++.+|.++|||||+|.+.++|.+|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~- 165 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ- 165 (196)
T ss_dssp EECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-
T ss_pred ecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-
Confidence 9987654322 233458999999999999999999999999999999999988999999999999999999999995
Q ss_pred CCceeCCeEEEEEEccCCCCCC
Q 015149 195 NGKWLGNRQIRCNWAAKGATSG 216 (412)
Q Consensus 195 ~~~~~~g~~l~v~~~~~~~~~~ 216 (412)
++..++|+.|.|.++.++....
T Consensus 166 ~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp SCCEETTEECEEEECC------
T ss_pred CCcEECCEEEEEEecCChhHhc
Confidence 8999999999999998765443
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=9.2e-33 Score=241.73 Aligned_cols=175 Identities=25% Similarity=0.430 Sum_probs=148.7
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
..++|||+|||+++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 34689999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred CCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-
Q 015149 211 KGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD- 289 (412)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~- 289 (412)
......... .. ........++|||+|||.++++++|+++|+.| |.|.+|++.++
T Consensus 107 ~~~~~~~~~--------~~---------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~ 161 (216)
T 2qfj_A 107 NIGQAQPII--------DQ---------------LAEEARAFNRIYVASVHQDLSDDDIKSVFEAF--GKIKSATLARDP 161 (216)
T ss_dssp CCGGGHHHH--------HH---------------HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTS--SCEEEEEEEECT
T ss_pred Cccccchhh--------hh---------------hhcccCCCcEEEEeCCCCcCCHHHHHHHHhcc--CCeeEEEEEecC
Confidence 432110000 00 00011233799999999999999999999999 99999999876
Q ss_pred -----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCC
Q 015149 290 -----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 330 (412)
Q Consensus 290 -----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~ 330 (412)
+|+|||+|.+.++|.+|++.|||..|+|+.|+|.|++++..
T Consensus 162 ~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 162 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred CCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 78999999999999999999999999999999999987644
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=9e-33 Score=241.81 Aligned_cols=169 Identities=23% Similarity=0.432 Sum_probs=153.2
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
.+.++|||+|||.++|+++|+++|+.||+|.+|++++++ .+|||||+|.+.++|.+|++.|++..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 446889999999999999999999999999999998764 5889999999999999999999999999999999988
Q ss_pred ccCCCC--------cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 015149 121 YASSQR--------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192 (412)
Q Consensus 121 ~~~~~~--------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~ 192 (412)
...... ......++|||+|||.++++++|+++|++||.|..+++..++.+|+++|||||+|.+.++|.+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 655422 123456899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceeCCeEEEEEEccCCC
Q 015149 193 DLNGKWLGNRQIRCNWAAKGA 213 (412)
Q Consensus 193 ~l~~~~~~g~~l~v~~~~~~~ 213 (412)
.|++..|+|+.|.|.|+..+.
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCS
T ss_pred HccCCEeCCcEEEEEEecCCC
Confidence 999999999999999997664
No 12
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=9.6e-33 Score=231.46 Aligned_cols=161 Identities=34% Similarity=0.539 Sum_probs=148.7
Q ss_pred CCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC----CCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc
Q 015149 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~----~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~ 121 (412)
++++|||+|||+++++++|+++|+.||+|.+|.+++++. +|+|||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 368899999999999999999999999999999998762 4799999999999999999999999999999999997
Q ss_pred cCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 015149 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (412)
Q Consensus 122 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g 201 (412)
+... ....++|||+|||.++++++|+++|+.||.|.++++..++.+|.++|+|||+|.+.++|.+|++.|+|..+.|
T Consensus 81 ~~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 157 (167)
T 1fxl_A 81 PSSA---SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 157 (167)
T ss_dssp CCCG---GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCcc---cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 6543 3456789999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred eE--EEEEEc
Q 015149 202 RQ--IRCNWA 209 (412)
Q Consensus 202 ~~--l~v~~~ 209 (412)
+. |.|.|+
T Consensus 158 ~~~~i~v~~A 167 (167)
T 1fxl_A 158 ATEPITVKFA 167 (167)
T ss_dssp CSSCCEEEEC
T ss_pred CccceEEEeC
Confidence 65 888875
No 13
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.6e-32 Score=236.51 Aligned_cols=173 Identities=25% Similarity=0.418 Sum_probs=147.2
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
.+....++|||+|||+++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|..|++. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3455678999999999999999999999999999999999999999999999999999999999984 999999999999
Q ss_pred EEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEe
Q 015149 207 NWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV 286 (412)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i 286 (412)
.++........ +......++|||+|||.++|+++|+++|+.| |.|.+|++
T Consensus 87 ~~~~~~~~~~~----------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i 136 (196)
T 1l3k_A 87 KRAVSREDSQR----------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY--GKIEVIEI 136 (196)
T ss_dssp EECCC---------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTT--SCEEEEEE
T ss_pred ecccCcccccc----------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcC--CCeEEEEE
Confidence 99865422110 1122334899999999999999999999999 99999999
Q ss_pred ecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCCC
Q 015149 287 QRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPP 331 (412)
Q Consensus 287 ~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~~ 331 (412)
.++ +|||||+|.+.++|.+|+.. +|..|+|+.|.|.|+.++...
T Consensus 137 ~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 137 MTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred eecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 876 68999999999999999987 899999999999999877643
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2.2e-32 Score=229.31 Aligned_cols=158 Identities=29% Similarity=0.484 Sum_probs=145.4
Q ss_pred CceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 015149 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (412)
Q Consensus 132 ~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 211 (412)
+++|||+|||+++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|..|++.+++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999999999864
Q ss_pred CCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc--
Q 015149 212 GATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-- 289 (412)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-- 289 (412)
.... ....+|||+|||..+++++|+++|+.| |.|.++++.++
T Consensus 82 ~~~~----------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~ 125 (167)
T 1fxl_A 82 SSAS----------------------------------IRDANLYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQV 125 (167)
T ss_dssp CCGG----------------------------------GTTCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTT
T ss_pred Cccc----------------------------------CCCCcEEECCCCCcCCHHHHHHHHHhc--CCEeEEEEEecCC
Confidence 4211 123789999999999999999999999 99999999875
Q ss_pred ----ccEEEEEeCCHHHHHHHHHHcCCCeeCCee--eEEEec
Q 015149 290 ----KGFGFVRYSTHPEAALAIQMGNARILCGKP--IKCSWG 325 (412)
Q Consensus 290 ----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~--l~V~~a 325 (412)
+|+|||+|.+.++|.+|++.|||..|.|+. |+|+||
T Consensus 126 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 126 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 689999999999999999999999999965 899886
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=4.4e-32 Score=228.67 Aligned_cols=159 Identities=23% Similarity=0.446 Sum_probs=145.9
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhcc----C-------CcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCc
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSST----G-------PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQ 113 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~----G-------~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~ 113 (412)
+++++|||+|||+++|+++|+++|++| | .|.++.+. +++|||||+|.+.++|.+|+ .+++..+.|+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~--~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~ 78 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE--TTTTEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec--CCCCEEEEEeCCHHHHHHHH-HhCCcEecCc
Confidence 457899999999999999999999999 6 66666664 45789999999999999999 8999999999
Q ss_pred eeEEEecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 015149 114 PIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193 (412)
Q Consensus 114 ~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~ 193 (412)
.|+|.++.... .....++|||+|||+++++++|+++|++||.|.++++..++.+|.++|||||+|.+.++|.+|++.
T Consensus 79 ~i~v~~~~~~~---~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 79 SLKIRRPHDYQ---PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp ECEEECCSSCC---CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred eeeecCCcccC---CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 99999876543 334578899999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCceeCCeEEEEEEc
Q 015149 194 LNGKWLGNRQIRCNWA 209 (412)
Q Consensus 194 l~~~~~~g~~l~v~~~ 209 (412)
|+|..++|+.|.|+|+
T Consensus 156 l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred cCCCEECCeEEEEEeC
Confidence 9999999999999987
No 16
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=8e-32 Score=227.68 Aligned_cols=161 Identities=22% Similarity=0.381 Sum_probs=143.4
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCC--CcccEEEEEecCHHHHHHHHHHhCCceeC---CeEEE
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTG--RSRGFGFVSFRNQEDAQSAINDLNGKWLG---NRQIR 205 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~--~~~g~afV~f~~~~~A~~ai~~l~~~~~~---g~~l~ 205 (412)
+.++|||+|||+++++++|+++|++||+|.+++++.++.++ +++|||||+|.+.++|..|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46789999999999999999999999999999999998877 89999999999999999999999998775 57778
Q ss_pred EEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEE
Q 015149 206 CNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR 285 (412)
Q Consensus 206 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~ 285 (412)
+.++...... ....++|||+|||..+|+++|+++|++| |.|.+++
T Consensus 82 ~~~~~~~~~~---------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~v~ 126 (175)
T 3nmr_A 82 MKPADSEKNN---------------------------------AVEDRKLFIGMISKKCTENDIRVMFSSF--GQIEECR 126 (175)
T ss_dssp EEECGGGCCS---------------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEE
T ss_pred Eccccccccc---------------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhC--CCEEEEE
Confidence 8776543211 1133789999999999999999999999 9999999
Q ss_pred eecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeC---CeeeEEEecC
Q 015149 286 VQRD-----KGFGFVRYSTHPEAALAIQMGNARILC---GKPIKCSWGS 326 (412)
Q Consensus 286 i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~---g~~l~V~~a~ 326 (412)
+.++ +|+|||+|.+.++|.+|++.|||..+. |++|+|+||.
T Consensus 127 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 127 ILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9887 789999999999999999999998775 4999999973
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=6.9e-32 Score=228.06 Aligned_cols=163 Identities=22% Similarity=0.388 Sum_probs=145.9
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC------CCCEEEEEecCHHHHHHHHHHhCCCccC---Ccee
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD------KSSYGFVDYFDRRSAALAIVTLNGRHIF---GQPI 115 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~------~~g~afV~f~~~~~A~~Al~~l~~~~~~---g~~l 115 (412)
+++++|||+|||+++++++|+++|++||+|.+|++++++ ++|||||+|.+.++|.+|++.+++..+. ++.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 467899999999999999999999999999999999874 4579999999999999999999998776 6778
Q ss_pred EEEecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 015149 116 KVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (412)
Q Consensus 116 ~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~ 195 (412)
.+.++..... .....++|||+|||+++++++|+++|++||.|.++++..++ +|.++|||||+|.+.++|.+|++.|+
T Consensus 81 ~~~~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 81 QMKPADSEKN--NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp EEEECGGGCC--SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEcccccccc--ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 8887765443 34467889999999999999999999999999999999885 68999999999999999999999999
Q ss_pred CceeC---CeEEEEEEcc
Q 015149 196 GKWLG---NRQIRCNWAA 210 (412)
Q Consensus 196 ~~~~~---g~~l~v~~~~ 210 (412)
|..+. |++|.|.|+.
T Consensus 158 g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 158 QAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TSCCCTTCSSCCEEEECC
T ss_pred CCcccCCCCCCeEEEecC
Confidence 98775 4999999973
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=2.3e-31 Score=234.57 Aligned_cols=195 Identities=18% Similarity=0.295 Sum_probs=152.7
Q ss_pred cCCCCCceEEECCCCc-cccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 127 EDTSGHFNVFVGDLSP-EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
....++++|||+|||+ ++++++|+++|+.||.|.+++++.++ +|||||+|.+.++|.+|++.+++..+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3456678999999999 99999999999999999999999774 78999999999999999999999999999999
Q ss_pred EEEccCCCCCCCccccCCcccccccccCCC-CCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcc-cEEE
Q 015149 206 CNWAAKGATSGDEKQSSDSKSVVELTNGIS-DGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG-TIED 283 (412)
Q Consensus 206 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G-~v~~ 283 (412)
|.++.......................... ..............++.++|||+|||..+++++|+++|+.| | .|.+
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~~i~~ 181 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKG 181 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTT--SCCEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHc--CCCeeE
Confidence 999976533221111110000000000000 00000001111234557999999999999999999999999 9 9999
Q ss_pred EEeec-cccEEEEEeCCHHHHHHHHHHcCCCeeC-CeeeEEEecCCC
Q 015149 284 VRVQR-DKGFGFVRYSTHPEAALAIQMGNARILC-GKPIKCSWGSKP 328 (412)
Q Consensus 284 v~i~~-~kg~afV~f~~~~~A~~A~~~l~g~~l~-g~~l~V~~a~~~ 328 (412)
|++.+ ++|+|||+|.+.++|.+|++.|||..|+ |+.|+|.|++++
T Consensus 182 v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 182 FKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99955 7999999999999999999999999999 999999999864
No 19
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.98 E-value=1.1e-31 Score=231.53 Aligned_cols=166 Identities=22% Similarity=0.426 Sum_probs=147.3
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhcc----C-------CcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCc
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSST----G-------PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQ 113 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~----G-------~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~ 113 (412)
+.+++|||+|||+++++++|+++|+.| | .|.++.+ .+++|||||+|.+.++|.+|+ .|++..+.|+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~--~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~ 78 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE--ETTTTEEEEEESCSHHHHHHG-GGTTEEETTE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe--cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCc
Confidence 457899999999999999999999999 4 5555555 456889999999999999999 8999999999
Q ss_pred eeEEEecccCCCC-----------------cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccE
Q 015149 114 PIKVNWAYASSQR-----------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGF 176 (412)
Q Consensus 114 ~l~v~~~~~~~~~-----------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~ 176 (412)
.|+|.++...... ......++|||+|||+++++++|+++|++||.|.++++..++.+|.++||
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~ 158 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 158 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEE
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceE
Confidence 9999998754221 11245689999999999999999999999999999999999889999999
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 015149 177 GFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213 (412)
Q Consensus 177 afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~ 213 (412)
|||+|.+.++|.+|++.|+|..++|+.|.|.++.++.
T Consensus 159 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 159 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999999997653
No 20
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.98 E-value=2.2e-31 Score=242.70 Aligned_cols=195 Identities=19% Similarity=0.310 Sum_probs=151.4
Q ss_pred CCCCCceEEECCCCccccHHHHH----HHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLF----ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~----~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~ 203 (412)
+...+++|||+|||+++++++|+ ++|+.||.|.+|++.. +++++|||||+|.+.++|.+|++.+++..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45667899999999999999976 8999999999998884 6889999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCccccCCcccc-----------------ccc-----------ccCC---------------------
Q 015149 204 IRCNWAAKGATSGDEKQSSDSKSV-----------------VEL-----------TNGI--------------------- 234 (412)
Q Consensus 204 l~v~~~~~~~~~~~~~~~~~~~~~-----------------~~~-----------~~~~--------------------- 234 (412)
|.|.|+.................. ... ..+.
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 999999765431100000000000 000 0000
Q ss_pred --------------CCC---------C-----CCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEe
Q 015149 235 --------------SDG---------Q-----EKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV 286 (412)
Q Consensus 235 --------------~~~---------~-----~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i 286 (412)
... . ............+.++|||+|||..+++++|+++|+.| |.|.+|++
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~--G~i~~v~~ 239 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQF--PGFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhc--CCeEEEEE
Confidence 000 0 00000011234467899999999999999999999999 99999999
Q ss_pred eccc-cEEEEEeCCHHHHHHHHHHcCCCeeC-CeeeEEEecCC
Q 015149 287 QRDK-GFGFVRYSTHPEAALAIQMGNARILC-GKPIKCSWGSK 327 (412)
Q Consensus 287 ~~~k-g~afV~f~~~~~A~~A~~~l~g~~l~-g~~l~V~~a~~ 327 (412)
.+++ |+|||+|.+.++|.+|++.|||..|. |+.|+|.|++.
T Consensus 240 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 240 VPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred ecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 9886 99999999999999999999999999 99999999873
No 21
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=1.5e-32 Score=230.36 Aligned_cols=161 Identities=24% Similarity=0.398 Sum_probs=147.2
Q ss_pred CCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc
Q 015149 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~ 121 (412)
++++|||+|||+++|+++|+++|+.||+|.+|++++++ ++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 57899999999999999999999999999999998864 47899999999999999997 3678999999999886
Q ss_pred cCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 015149 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (412)
Q Consensus 122 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g 201 (412)
+... ....++|||+|||+++++++|+++|+.||.|.++++..++.+|.++|||||+|.+.++|.+|++ +++..++|
T Consensus 80 ~~~~---~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 80 PRDE---QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp CHHH---HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred chhh---ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 5432 2345789999999999999999999999999999999998899999999999999999999999 89999999
Q ss_pred eEEEEEEccCC
Q 015149 202 RQIRCNWAAKG 212 (412)
Q Consensus 202 ~~l~v~~~~~~ 212 (412)
+.|.|.|+.++
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999999764
No 22
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=1.4e-31 Score=230.70 Aligned_cols=162 Identities=18% Similarity=0.214 Sum_probs=141.2
Q ss_pred CCCCEEEEcCCC-ccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccC
Q 015149 45 STCRSVYVGNIH-PQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (412)
Q Consensus 45 ~~~~tl~V~nLp-~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~ 123 (412)
.++++|||+||| +++++++|+++|+.||.|.+|+++++ ++|||||+|.+.++|.+|++.|||..+.|+.|+|.+++..
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 357899999999 89999999999999999999999876 4799999999999999999999999999999999998632
Q ss_pred CCCc----------------------------------CCCCCceEEECCCCccccHHHHHHHhhcCCCe--eeEEEeec
Q 015149 124 SQRE----------------------------------DTSGHFNVFVGDLSPEVTDATLFACFSVFPTC--SDARVMWD 167 (412)
Q Consensus 124 ~~~~----------------------------------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v--~~~~~~~d 167 (412)
.... ...++++|||+|||+++++++|+++|+.||.| .+++++.+
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 81 AIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG 160 (205)
T ss_dssp CCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC
T ss_pred ccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC
Confidence 2100 01234689999999999999999999999999 88988877
Q ss_pred CCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCe----EEEEEEc
Q 015149 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR----QIRCNWA 209 (412)
Q Consensus 168 ~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~----~l~v~~~ 209 (412)
+ +.++|+|||+|.+.++|.+||..|||..+.|+ ++.|+++
T Consensus 161 ~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 161 K--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp C--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred C--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 4 55679999999999999999999999999876 5666664
No 23
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=2.6e-32 Score=228.93 Aligned_cols=159 Identities=26% Similarity=0.453 Sum_probs=143.8
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
++++|||+|||+++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|..|++ ++..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 35789999999999999999999999999999999999999999999999999999999999 4678999999998875
Q ss_pred CCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-
Q 015149 211 KGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD- 289 (412)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~- 289 (412)
+... ..+.++|||+|||..+++++|+++|+.| |.|.++++.++
T Consensus 80 ~~~~----------------------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~ 123 (167)
T 2cjk_A 80 PRDE----------------------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQW--GTIIDAQLMLDK 123 (167)
T ss_dssp CHHH----------------------------------HHHCEEEEEEEECTTCCHHHHHHHHHTT--SCCSEEECCCSS
T ss_pred chhh----------------------------------ccCCCeEEECCCCCCCCHHHHHHHHHhC--ccEEEEEEEEcC
Confidence 4210 0122689999999999999999999999 99999999876
Q ss_pred -----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCC
Q 015149 290 -----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328 (412)
Q Consensus 290 -----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~ 328 (412)
+|+|||+|.+.++|.+|++ ++|..|+|+.|+|.|++++
T Consensus 124 ~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 124 DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 5899999999999999998 8999999999999999765
No 24
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=3e-31 Score=228.79 Aligned_cols=191 Identities=19% Similarity=0.310 Sum_probs=150.3
Q ss_pred CCceEEECCCCc-cccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 131 GHFNVFVGDLSP-EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 131 ~~~~l~v~nlp~-~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
++++|||+|||+ ++++++|+++|+.||.|.+++++.++ +|||||+|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357899999999 99999999999999999999998764 789999999999999999999999999999999999
Q ss_pred cCCCCCCCccccCCcccccccccCC-CCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcc-cEEEEEee
Q 015149 210 AKGATSGDEKQSSDSKSVVELTNGI-SDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG-TIEDVRVQ 287 (412)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G-~v~~v~i~ 287 (412)
......................... ...............++.++|||+|||..+++++|+++|+.| | .|.++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~~v~~v~i~ 154 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKGFKFF 154 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHT--TSCCCEEEES
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHc--CCCceEEEEE
Confidence 7654322211111100000000000 000001111112233567999999999999999999999999 9 99999996
Q ss_pred c-cccEEEEEeCCHHHHHHHHHHcCCCeeC-CeeeEEEecCCC
Q 015149 288 R-DKGFGFVRYSTHPEAALAIQMGNARILC-GKPIKCSWGSKP 328 (412)
Q Consensus 288 ~-~kg~afV~f~~~~~A~~A~~~l~g~~l~-g~~l~V~~a~~~ 328 (412)
+ ++|+|||+|.+.++|.+|++.|||..++ |+.|+|.|++++
T Consensus 155 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 155 QKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp STTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred eCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 5 6999999999999999999999999999 999999999764
No 25
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=8.1e-31 Score=225.92 Aligned_cols=188 Identities=13% Similarity=0.171 Sum_probs=142.0
Q ss_pred CCceEEECCCC-ccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 131 GHFNVFVGDLS-PEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 131 ~~~~l~v~nlp-~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
++.+|||+||| +.+++++|+++|+.||.|.+++++.+ ++|||||+|.+.++|..||+.|||..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46789999999 89999999999999999999999865 3799999999999999999999999999999999998
Q ss_pred cCCCCCCCccccC-Cccc-ccccccCCCCCCCC-CCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccE--EEE
Q 015149 210 AKGATSGDEKQSS-DSKS-VVELTNGISDGQEK-SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI--EDV 284 (412)
Q Consensus 210 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v--~~v 284 (412)
............. .... .............. .........++.++|||+|||..+|+++|+++|++| |.| .++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~--G~v~~~~v 155 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDEL--GVKRPTSV 155 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHH--TCCCCSEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhc--CCcceEEE
Confidence 7554311100000 0000 00000000000000 000001123456899999999999999999999999 988 899
Q ss_pred Eeecc----ccEEEEEeCCHHHHHHHHHHcCCCeeCCe----eeEEEec
Q 015149 285 RVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGK----PIKCSWG 325 (412)
Q Consensus 285 ~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~g~----~l~V~~a 325 (412)
++..+ +|+|||+|.+.++|.+|+..|||..|.|+ ++.|+|+
T Consensus 156 ~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 156 KVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 98876 48999999999999999999999999886 5666664
No 26
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=7.3e-31 Score=231.37 Aligned_cols=164 Identities=21% Similarity=0.361 Sum_probs=146.2
Q ss_pred CCCCCCEEEEcCCCc-cCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc
Q 015149 43 DASTCRSVYVGNIHP-QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~-~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~ 121 (412)
...++++|||+|||+ ++++++|+++|++||+|.+|++++++ +|||||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 345689999999999 99999999999999999999998876 7899999999999999999999999999999999987
Q ss_pred cCCCC--------------------------------cCCCCCceEEECCCCccccHHHHHHHhhcCC-CeeeEEEeecC
Q 015149 122 ASSQR--------------------------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFP-TCSDARVMWDQ 168 (412)
Q Consensus 122 ~~~~~--------------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G-~v~~~~~~~d~ 168 (412)
..... ....+.++|||+|||.++++++|+++|+.|| .|.+++++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~- 187 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 187 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-
Confidence 54210 0112368899999999999999999999999 9999998743
Q ss_pred CCCCcccEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEccCC
Q 015149 169 KTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG-NRQIRCNWAAKG 212 (412)
Q Consensus 169 ~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~-g~~l~v~~~~~~ 212 (412)
.+|+|||+|.+.++|.+|+..|+|..+. |+.|.|.|+.+.
T Consensus 188 ----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 188 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred ----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3789999999999999999999999999 999999998653
No 27
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=2.4e-31 Score=224.74 Aligned_cols=164 Identities=23% Similarity=0.382 Sum_probs=143.1
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
+....++|||+|||+++++++|+++|+.||.+.. .++.+..+++++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4566789999999999999999999999998876 344555778999999999999999999995 99999999999999
Q ss_pred EccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEee
Q 015149 208 WAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ 287 (412)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~ 287 (412)
++...... ...+.++|||+|||..+++++|+++|+.| |.|..+ ..
T Consensus 87 ~~~~~~~~--------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~--g~v~~~-~~ 131 (175)
T 1fje_B 87 KPKGRDSK--------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDA--LEIRLV-SQ 131 (175)
T ss_dssp CCCCSSCS--------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTC--SEEEEE-CS
T ss_pred cCCCcccc--------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhc--CeEEEe-cC
Confidence 98654211 11234899999999999999999999999 999888 21
Q ss_pred --ccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCC
Q 015149 288 --RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328 (412)
Q Consensus 288 --~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~ 328 (412)
+.+|+|||+|.+.++|.+|++.|||..|+|+.|+|.|++++
T Consensus 132 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 132 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 23899999999999999999999999999999999999765
No 28
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.5e-30 Score=219.85 Aligned_cols=164 Identities=18% Similarity=0.348 Sum_probs=143.9
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEE---eecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL---IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~---~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
....+.++|||+|||.++++++|+++|+.||.+..+.+ ...+++|||||+|.+.++|.+|+ .|++..+.|+.|+|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 45677899999999999999999999999987665222 22356899999999999999999 699999999999999
Q ss_pred ecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCce
Q 015149 119 WAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (412)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~ 198 (412)
++..... ......++|||+|||+++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|+|..
T Consensus 87 ~~~~~~~-~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 1fje_B 87 KPKGRDS-KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 160 (175)
T ss_dssp CCCCSSC-STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEE
T ss_pred cCCCccc-cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 9976543 334467899999999999999999999999988655 4678999999999999999999999999999
Q ss_pred eCCeEEEEEEccCC
Q 015149 199 LGNRQIRCNWAAKG 212 (412)
Q Consensus 199 ~~g~~l~v~~~~~~ 212 (412)
++|+.|.|.|+.++
T Consensus 161 ~~g~~i~v~~a~~k 174 (175)
T 1fje_B 161 IDGRSVSLYYTGEK 174 (175)
T ss_dssp ETTEEEEEEECSSC
T ss_pred ECCeEEEEEecCCC
Confidence 99999999999764
No 29
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=6.5e-30 Score=220.46 Aligned_cols=177 Identities=14% Similarity=0.253 Sum_probs=143.3
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCC-----------CeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFP-----------TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL 199 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G-----------~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~ 199 (412)
..++|||+|||+++++++|+++|+.|| .|.++.+ ++++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 357899999999999999999999995 4444443 466999999999999999999 7999999
Q ss_pred CCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcc
Q 015149 200 GNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 279 (412)
Q Consensus 200 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G 279 (412)
.|+.|.|.++............... ............+.++|||+|||..+++++|+++|+.| |
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G 139 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSV--------------YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSF--G 139 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSC--------------CCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTB--S
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcC--------------CCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHc--C
Confidence 9999999998765332211100000 00001112223456899999999999999999999999 9
Q ss_pred cEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCC
Q 015149 280 TIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 330 (412)
Q Consensus 280 ~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~ 330 (412)
.|.++++.++ +|+|||+|.+.++|.+|++.|||..|+|+.|+|.|++++..
T Consensus 140 ~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 140 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999876 78999999999999999999999999999999999987654
No 30
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3.6e-30 Score=234.87 Aligned_cols=168 Identities=25% Similarity=0.405 Sum_probs=156.7
Q ss_pred CCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc
Q 015149 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~ 121 (412)
..++|||+|||+++++++|+++|+.||+|.+|.++.++ ++|||||+|.+.++|.+|+..+++..+.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45789999999999999999999999999999998765 36799999999999999999999999999999999999
Q ss_pred cCCCCcCCCCCceEEECCCCccc-cHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 015149 122 ASSQREDTSGHFNVFVGDLSPEV-TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (412)
Q Consensus 122 ~~~~~~~~~~~~~l~v~nlp~~~-~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~ 200 (412)
++.........++|||+|||+++ ++++|+++|+.||.|.++++..+. +|.++|+|||+|.+.++|.+|+..|+|..++
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 88777777788999999999995 999999999999999999999885 7899999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q 015149 201 NRQIRCNWAAKGAT 214 (412)
Q Consensus 201 g~~l~v~~~~~~~~ 214 (412)
|+.|.|.|+.++..
T Consensus 253 g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 253 GSHLRVSFCAPGPP 266 (284)
T ss_dssp TEECEEEECCSSSC
T ss_pred CeEEEEEEecCCCc
Confidence 99999999977643
No 31
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=5.9e-30 Score=233.22 Aligned_cols=163 Identities=20% Similarity=0.401 Sum_probs=145.3
Q ss_pred CCCCCCEEEEcCCCccCCHHHHH----HHhhccCCcceEEEeec-CCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEE
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQ----EVFSSTGPLEGCKLIKK-DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~----~~f~~~G~i~~v~~~~~-~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v 117 (412)
+..++++|||+|||+++++++|+ ++|+.||.|.+|++.+. +.+|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45668999999999999999976 89999999999998864 35789999999999999999999999999999999
Q ss_pred EecccCCCC-----------------------------------------------------------------------
Q 015149 118 NWAYASSQR----------------------------------------------------------------------- 126 (412)
Q Consensus 118 ~~~~~~~~~----------------------------------------------------------------------- 126 (412)
.|+......
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 998654320
Q ss_pred -------------------------------------cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCC
Q 015149 127 -------------------------------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQK 169 (412)
Q Consensus 127 -------------------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~ 169 (412)
......++|||+|||.++++++|+++|++||.|.+++++.++
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 122245789999999999999999999999999999998553
Q ss_pred CCCcccEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEcc
Q 015149 170 TGRSRGFGFVSFRNQEDAQSAINDLNGKWLG-NRQIRCNWAA 210 (412)
Q Consensus 170 ~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~-g~~l~v~~~~ 210 (412)
+|||||+|.+.++|.+|++.|+|..+. |+.|.|.|++
T Consensus 244 ----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 ----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 689999999999999999999999999 9999999985
No 32
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=5.9e-30 Score=230.05 Aligned_cols=161 Identities=24% Similarity=0.379 Sum_probs=146.7
Q ss_pred CCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEe
Q 015149 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (412)
Q Consensus 40 ~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~ 119 (412)
......+.++|||+|||+++|+++|+++|+.||+|.+|.+.+ ++|||||+|.+.++|.+|+..+++..+.|+.|+|.+
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 15 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp TCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 334556778999999999999999999999999999999854 578999999999999999999999999999999999
Q ss_pred cccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh-CCce
Q 015149 120 AYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL-NGKW 198 (412)
Q Consensus 120 ~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l-~~~~ 198 (412)
+.+ ..+|||+|||+.+++++|+++|+.||.|.++.++.| .+|+++|||||+|.+.++|.+|+..+ ++..
T Consensus 93 a~~---------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 162 (261)
T 3sde_A 93 ATH---------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAF 162 (261)
T ss_dssp CCC---------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred ccc---------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeE
Confidence 864 458999999999999999999999999999999999 68999999999999999999999999 4555
Q ss_pred eC---CeEEEEEEccCC
Q 015149 199 LG---NRQIRCNWAAKG 212 (412)
Q Consensus 199 ~~---g~~l~v~~~~~~ 212 (412)
+. +++|.|.++...
T Consensus 163 ~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 163 LLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp ESSSSCCBCEEEECCCE
T ss_pred EecCCCceEEEeecccc
Confidence 54 999999998754
No 33
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=2.3e-30 Score=223.32 Aligned_cols=161 Identities=22% Similarity=0.365 Sum_probs=144.2
Q ss_pred CCCEEEEcCCCc-cCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCC
Q 015149 46 TCRSVYVGNIHP-QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (412)
Q Consensus 46 ~~~tl~V~nLp~-~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~ 124 (412)
.+++|||+|||+ ++++++|+++|+.||+|.+|++.+++ +|||||+|.+.++|.+|++.|++..+.|+.|+|.++....
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 368899999999 99999999999999999999998875 7899999999999999999999999999999999987542
Q ss_pred CC--------------------------------cCCCCCceEEECCCCccccHHHHHHHhhcCC-CeeeEEEeecCCCC
Q 015149 125 QR--------------------------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFP-TCSDARVMWDQKTG 171 (412)
Q Consensus 125 ~~--------------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G-~v~~~~~~~d~~~~ 171 (412)
.. ....++++|||+|||..+++++|+++|+.|| .|.+++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~---- 156 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---- 156 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----
Confidence 10 0113368899999999999999999999999 9999998754
Q ss_pred CcccEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEccCC
Q 015149 172 RSRGFGFVSFRNQEDAQSAINDLNGKWLG-NRQIRCNWAAKG 212 (412)
Q Consensus 172 ~~~g~afV~f~~~~~A~~ai~~l~~~~~~-g~~l~v~~~~~~ 212 (412)
.+|+|||+|.+.++|.+|+..|+|..++ |+.|.|.|+.++
T Consensus 157 -~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 -DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp -TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred -CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3799999999999999999999999999 999999998653
No 34
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=5.2e-30 Score=215.93 Aligned_cols=153 Identities=16% Similarity=0.347 Sum_probs=136.2
Q ss_pred CCceEEECCCCccccHHHHHHHhhcC----C-------CeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVF----P-------TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL 199 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~----G-------~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~ 199 (412)
+.++|||+|||+++++++|+++|+.| | .|.++.+. +++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45789999999999999999999999 6 56666554 55899999999999999999 7999999
Q ss_pred CCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcc
Q 015149 200 GNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 279 (412)
Q Consensus 200 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G 279 (412)
.|+.|.|.++...... ...++|||+|||..+++++|+++|++| |
T Consensus 76 ~g~~i~v~~~~~~~~~----------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~--G 119 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL----------------------------------PGAHKLFIGGLPNYLNDDQVKELLTSF--G 119 (172)
T ss_dssp TTEECEEECCSSCCCC----------------------------------TTTTCEEEECCCTTCCHHHHHHHHHTT--S
T ss_pred cCceeeecCCcccCCC----------------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhc--C
Confidence 9999999986543211 113789999999999999999999999 9
Q ss_pred cEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 280 TIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 280 ~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
.|.++++.++ +|+|||+|.+.++|.+|++.|||..|+|+.|+|.||.
T Consensus 120 ~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 120 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999877 6899999999999999999999999999999999973
No 35
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=5.3e-30 Score=234.69 Aligned_cols=167 Identities=20% Similarity=0.310 Sum_probs=147.6
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccC-CcceEEEeecC---CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTG-PLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G-~i~~v~~~~~~---~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
.+.++|||+|||+++++++|+++|+.|| +|.+|.+.+++ .+|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3578999999999999999999999999 99999998765 5889999999999999999999999999999999999
Q ss_pred ccCCCCc----CCCCCceEEECCCCcc-ccHHHHHHHhhcCCCeeeEEEeecCC-CCCcccEEEEEecCHHHHHHHHHHh
Q 015149 121 YASSQRE----DTSGHFNVFVGDLSPE-VTDATLFACFSVFPTCSDARVMWDQK-TGRSRGFGFVSFRNQEDAQSAINDL 194 (412)
Q Consensus 121 ~~~~~~~----~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~v~~~~~~~d~~-~~~~~g~afV~f~~~~~A~~ai~~l 194 (412)
.+..... .....++|||+|||++ +++++|+++|+.||.|..++++.+.. ||.++|||||+|.+.++|.+|+ .|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 8665432 3456789999999999 99999999999999999999998865 5999999999999999999999 99
Q ss_pred CCceeCCeEEEEEEccCC
Q 015149 195 NGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 195 ~~~~~~g~~l~v~~~~~~ 212 (412)
+|..|+|+.|.|.|+.++
T Consensus 274 ~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 274 NRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTEEETTEEEEEEECCCC
T ss_pred cCCEECCcEEEEEEecCC
Confidence 999999999999999765
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=1e-28 Score=222.00 Aligned_cols=154 Identities=27% Similarity=0.453 Sum_probs=140.2
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
.....++|||+|||+++++++|+++|+.||.|.++.+. +++|||||+|.+.++|..|+..+++..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 34566899999999999999999999999999999986 347999999999999999999999999999999999
Q ss_pred EccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEee
Q 015149 208 WAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ 287 (412)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~ 287 (412)
++.+. .+|||+|||..+|+++|+++|+.| |.|.+|.+.
T Consensus 92 ~a~~~----------------------------------------~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~v~i~ 129 (261)
T 3sde_A 92 FATHG----------------------------------------AALTVKNLSPVVSNELLEQAFSQF--GPVEKAVVV 129 (261)
T ss_dssp ECCCS----------------------------------------SEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEE
T ss_pred ecccC----------------------------------------CcccccCCCCCCCHHHHHHHHHhc--CCeEEEEee
Confidence 98532 689999999999999999999999 999999998
Q ss_pred cc-----ccEEEEEeCCHHHHHHHHHHcC-CCeeC---CeeeEEEecCCCC
Q 015149 288 RD-----KGFGFVRYSTHPEAALAIQMGN-ARILC---GKPIKCSWGSKPT 329 (412)
Q Consensus 288 ~~-----kg~afV~f~~~~~A~~A~~~l~-g~~l~---g~~l~V~~a~~~~ 329 (412)
.+ +|+|||+|.+.++|.+|+..|| |..+. |++|.|.++....
T Consensus 130 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 130 VDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred eCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 77 7999999999999999999995 55554 9999999997653
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=3.2e-22 Score=165.54 Aligned_cols=146 Identities=20% Similarity=0.292 Sum_probs=108.2
Q ss_pred eEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCC
Q 015149 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEK 240 (412)
Q Consensus 161 ~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
.+.++.+.. +++||+||+|.+.++|++|+..+++....+..+.+.......... ...
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 58 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT---------------------EGS 58 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEE---------------------CCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccc---------------------ccc
Confidence 356666643 689999999999999999998877543322222222111000000 000
Q ss_pred CCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCe
Q 015149 241 SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARI 314 (412)
Q Consensus 241 ~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~ 314 (412)
.............+|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..
T Consensus 59 ~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~--G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 136 (158)
T 2kn4_A 59 HHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKY--GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 136 (158)
T ss_dssp CCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEE
T ss_pred cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 001112223445899999999999999999999999 99999999876 6899999999999999999999999
Q ss_pred eCCeeeEEEecCCCCCC
Q 015149 315 LCGKPIKCSWGSKPTPP 331 (412)
Q Consensus 315 l~g~~l~V~~a~~~~~~ 331 (412)
|+|++|+|.|+++..++
T Consensus 137 ~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 137 LDGRELRVQMARYGRPP 153 (158)
T ss_dssp SSSSEEEEEEECCSSCC
T ss_pred ECCeEEEEEECCCCCCC
Confidence 99999999999876543
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=2.3e-22 Score=166.34 Aligned_cols=138 Identities=22% Similarity=0.299 Sum_probs=111.6
Q ss_pred EEEeecC--CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEE-------Eeccc---CCCCcCCCCCceEEECCCCccc
Q 015149 77 CKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV-------NWAYA---SSQREDTSGHFNVFVGDLSPEV 144 (412)
Q Consensus 77 v~~~~~~--~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v-------~~~~~---~~~~~~~~~~~~l~v~nlp~~~ 144 (412)
++++.++ .+|||||+|.+.++|.+|+..+++....+..+.+ ..... ...........+|||+|||+++
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 82 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRT 82 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTC
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 4555553 5899999999999999999888754332222222 22111 1122333456899999999999
Q ss_pred cHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 015149 145 TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGAT 214 (412)
Q Consensus 145 ~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~ 214 (412)
++++|+++|+.||.|.++++..|+.+|+++|||||+|.+.++|..|++.|+|..+.|+.|.|.++.++..
T Consensus 83 ~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999999999998999999999999999999999999999999999999999976543
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=2.8e-22 Score=164.24 Aligned_cols=137 Identities=23% Similarity=0.339 Sum_probs=112.7
Q ss_pred CCcccEEEEEecCHHHHHHHHHHh-CCceeCCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCC
Q 015149 171 GRSRGFGFVSFRNQEDAQSAINDL-NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENN 249 (412)
Q Consensus 171 ~~~~g~afV~f~~~~~A~~ai~~l-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (412)
...+|+++|+|.+.++|++|++.+ ++..++| .+.+.++.......... ............
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~~~ 70 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS------------------HHHHHHMHRDSC 70 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS------------------SSCCCCSCSSSS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc------------------ccccccccccCC
Confidence 467899999999999999999999 9999999 99998775431110000 000011122233
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCC
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~ 328 (412)
.+.++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|++|+|.|++++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYY--GPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHH--SCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 455899999999999999999999999 99999999998 999999999999999999999999999999999999765
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1.1e-21 Score=152.79 Aligned_cols=109 Identities=28% Similarity=0.495 Sum_probs=74.7
Q ss_pred CceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 015149 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (412)
Q Consensus 132 ~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 211 (412)
..+|||+|||+++++++|+++|+.||.|.+++++.|+ +.++|||||+|.+.++|.+|++.|++..|+|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4679999999999999999999999999999999985 45899999999999999999999999999999999999875
Q ss_pred CCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHH
Q 015149 212 GATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVD 268 (412)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~ 268 (412)
+....... ........+|||+|||+++|++.
T Consensus 83 ~~~~~~~~--------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAEL--------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC------------------------------------------------------
T ss_pred cccccccc--------------------------ccccCCCCceEeCCCCCCccccc
Confidence 43221110 01112235799999999999863
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1.5e-21 Score=151.95 Aligned_cols=103 Identities=24% Similarity=0.460 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC--CCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccC
Q 015149 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK--SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~--~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~ 123 (412)
.+++|||+|||+++++++|+++|++||+|.+|++++++. +|||||+|.+.++|.+|++.|++..|.|+.|+|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 356799999999999999999999999999999998764 689999999999999999999999999999999999866
Q ss_pred CCCcC-----CCCCceEEECCCCccccHHH
Q 015149 124 SQRED-----TSGHFNVFVGDLSPEVTDAT 148 (412)
Q Consensus 124 ~~~~~-----~~~~~~l~v~nlp~~~~~~~ 148 (412)
..+.. .....+|||+|||+++|++-
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 54322 22345799999999998863
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=2.6e-21 Score=158.39 Aligned_cols=123 Identities=20% Similarity=0.297 Sum_probs=110.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHh-CCCccCCceeEEEecccC-------------CCCcCCCCCceEEECCCCccccHHHH
Q 015149 84 KSSYGFVDYFDRRSAALAIVTL-NGRHIFGQPIKVNWAYAS-------------SQREDTSGHFNVFVGDLSPEVTDATL 149 (412)
Q Consensus 84 ~~g~afV~f~~~~~A~~Al~~l-~~~~~~g~~l~v~~~~~~-------------~~~~~~~~~~~l~v~nlp~~~~~~~l 149 (412)
-+|+++|+|.+.++|.+|++.+ |+..+.| .+.+.++... .........++|||+|||+++++++|
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 4789999999999999999999 9999999 9999988652 12334456789999999999999999
Q ss_pred HHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 150 FACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 150 ~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
+++|+.||.|.+++++.+ ++|||||+|.+.++|..|+..|+|..+.|+.|.|.|+.++
T Consensus 91 ~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999865 5899999999999999999999999999999999998765
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=140.12 Aligned_cols=81 Identities=32% Similarity=0.514 Sum_probs=77.6
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
..++|||+|||+++++++|+++|++||+|.++++++|+.+|+++|||||+|.+.++|.+|++.|+|..++|+.|+|+|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 015149 211 K 211 (412)
Q Consensus 211 ~ 211 (412)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 44
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8e-20 Score=137.35 Aligned_cols=81 Identities=15% Similarity=0.234 Sum_probs=74.2
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcC--CCeeCCeeeEEEecC
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGN--ARILCGKPIKCSWGS 326 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~--g~~l~g~~l~V~~a~ 326 (412)
.++.++|||+|||+++|+++|+++|++| |.|.+|+++++||||||+|.+.++|.+|++.|+ +..|.|++|+|.|++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~f--G~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHH--CCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 3455899999999999999999999999 999999999999999999999999999999886 478999999999998
Q ss_pred CCCCC
Q 015149 327 KPTPP 331 (412)
Q Consensus 327 ~~~~~ 331 (412)
++...
T Consensus 91 ~~~~~ 95 (105)
T 1sjq_A 91 HKELK 95 (105)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76543
No 45
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=135.34 Aligned_cols=84 Identities=21% Similarity=0.330 Sum_probs=74.8
Q ss_pred CCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCe--eCCeeeE
Q 015149 244 DAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARI--LCGKPIK 321 (412)
Q Consensus 244 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~--l~g~~l~ 321 (412)
++....++.++|||+|||+++|+++|+++|++| |.|.+|+++++||+|||+|.+.++|.+|++.|+|.. |.|++|+
T Consensus 13 ~~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~f--G~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 13 DDPHKTPASPVVHIRGLIDGVVEADLVEALQEF--GPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp ----CCCCCSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cccccCCCCcEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 344455677999999999999999999999999 999999999999999999999999999999999885 7899999
Q ss_pred EEecCCCC
Q 015149 322 CSWGSKPT 329 (412)
Q Consensus 322 V~~a~~~~ 329 (412)
|.|++++.
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99998653
No 46
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=136.62 Aligned_cols=75 Identities=35% Similarity=0.498 Sum_probs=70.8
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
...+|||+|||.++|+++|+++|++| |.|.+|++.+| +|||||+|.+.++|.+|++.|||..|+|++|+|.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSI--GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34789999999999999999999999 99999999876 68999999999999999999999999999999999
Q ss_pred cCC
Q 015149 325 GSK 327 (412)
Q Consensus 325 a~~ 327 (412)
++|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 47
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=2.3e-19 Score=128.26 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=70.7
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
...|||+||++.+|+++|+++|.+| |+|.++++..+||||||+|.+.++|.+|++.|||..|.||.|+|.+|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~--G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQH--GPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHH--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhh--CCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4679999999999999999999999 999999999999999999999999999999999999999999999984
No 48
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=136.23 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=79.0
Q ss_pred CCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
.+.++|||+|||+++++++|+++|++||.|.+++++.|+.+++++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 015149 210 AKG 212 (412)
Q Consensus 210 ~~~ 212 (412)
..+
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 49
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=8.4e-20 Score=135.53 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=76.6
Q ss_pred CceEEECCCCccccHHHHHHHhhcCC-CeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh-CCceeCCeEEEEEEc
Q 015149 132 HFNVFVGDLSPEVTDATLFACFSVFP-TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL-NGKWLGNRQIRCNWA 209 (412)
Q Consensus 132 ~~~l~v~nlp~~~~~~~l~~~f~~~G-~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l-~~~~~~g~~l~v~~~ 209 (412)
+++|||+|||+++++++|+++|+.|| .|.++++++|+.+|.++|||||+|.+.++|.+|++.+ ++..++|+.|.|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999977 456799999999999
Q ss_pred cCCCC
Q 015149 210 AKGAT 214 (412)
Q Consensus 210 ~~~~~ 214 (412)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 77643
No 50
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=2.6e-19 Score=139.54 Aligned_cols=104 Identities=16% Similarity=0.222 Sum_probs=94.2
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC-CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeccc
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~-~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~ 122 (412)
+.++++|||+|||+++++++|+++|+.||.|.+|.+..++ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3457899999999999999999999999999999998764 478999999999999999999999999999999999976
Q ss_pred CCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCC
Q 015149 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPT 158 (412)
Q Consensus 123 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~ 158 (412)
.... .+++...++++|.++|++||.
T Consensus 85 ~~~~-----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF-----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT-----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh-----------hhhhHhHhHHHHHHHHHHhCC
Confidence 5532 578889999999999999985
No 51
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=130.59 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=73.8
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHc--CCCeeCCeeeEEEecC
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMG--NARILCGKPIKCSWGS 326 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l--~g~~l~g~~l~V~~a~ 326 (412)
.++.++|||+|||.++++++|+++|++| |.|.+|.++++||||||+|.+.++|.+|++.| ++..|.|++|+|.|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f--G~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPF--GKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 3456899999999999999999999999 99999999999999999999999999999976 5778999999999998
Q ss_pred CCCC
Q 015149 327 KPTP 330 (412)
Q Consensus 327 ~~~~ 330 (412)
.+..
T Consensus 90 ~~~~ 93 (101)
T 2cq1_A 90 HKEL 93 (101)
T ss_dssp CSSC
T ss_pred cccC
Confidence 7654
No 52
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.3e-19 Score=135.96 Aligned_cols=82 Identities=15% Similarity=0.232 Sum_probs=75.2
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCC--CeeCCeeeEEEec
Q 015149 248 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNA--RILCGKPIKCSWG 325 (412)
Q Consensus 248 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g--~~l~g~~l~V~~a 325 (412)
..++.++|||+|||+++++++|+++|++| |.|.+|+++++||||||+|.+.++|.+|++.|++ ..|.|++|+|.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~f--G~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTT--SCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 44566899999999999999999999999 9999999999999999999999999999998874 6899999999999
Q ss_pred CCCCCC
Q 015149 326 SKPTPP 331 (412)
Q Consensus 326 ~~~~~~ 331 (412)
+++...
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 876544
No 53
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.2e-19 Score=132.98 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=72.1
Q ss_pred CcceEEEecCCC-CCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCC--eeCCeeeEEEecCC
Q 015149 251 QYTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNAR--ILCGKPIKCSWGSK 327 (412)
Q Consensus 251 ~~~~l~V~nL~~-~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~--~l~g~~l~V~~a~~ 327 (412)
+.++|||+|||+ ++++++|+++|++| |.|.+|.+++++|||||+|.+.++|.+|++.||+. .|.|++|+|.|++.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~f--G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPF--GVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGG--SCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhc--CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 458999999999 99999999999999 99999999999999999999999999999998864 59999999999986
Q ss_pred CC
Q 015149 328 PT 329 (412)
Q Consensus 328 ~~ 329 (412)
..
T Consensus 92 ~~ 93 (102)
T 1x4d_A 92 YK 93 (102)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 54
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=1.5e-19 Score=144.58 Aligned_cols=125 Identities=22% Similarity=0.363 Sum_probs=83.6
Q ss_pred EEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEee
Q 015149 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMW 166 (412)
Q Consensus 87 ~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~ 166 (412)
++|.+|++...+..|+..+++....|+. .+.+.. ...+....++|||+|||+++++++|+++|+.||.|..++++.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~---~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 81 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGR---PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR 81 (135)
T ss_dssp ------------------------------CCSCC---SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCC---CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 6788999999999999999887766653 222222 233445567899999999999999999999999999999999
Q ss_pred cCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCC
Q 015149 167 DQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215 (412)
Q Consensus 167 d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~ 215 (412)
++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|.|+......
T Consensus 82 ~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 82 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9889999999999999999999999999999999999999999766433
No 55
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=3.1e-19 Score=132.92 Aligned_cols=81 Identities=19% Similarity=0.401 Sum_probs=74.9
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCC--eeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc----eeCCeEE
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPT--CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK----WLGNRQI 204 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~--v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~----~~~g~~l 204 (412)
.-.+|||+|||+++++++|+++|++||. +.+|++++|+.+|++||||||+|.+.++|.+|++.|++. .++|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3468999999999999999999999995 678999999999999999999999999999999999986 5899999
Q ss_pred EEEEccC
Q 015149 205 RCNWAAK 211 (412)
Q Consensus 205 ~v~~~~~ 211 (412)
.|+|++.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999853
No 56
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=6.4e-18 Score=131.60 Aligned_cols=83 Identities=36% Similarity=0.642 Sum_probs=76.2
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
.+.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345899999999999999999999999 99999999876 6899999999999999999999999999999999
Q ss_pred ecCCCCCCCCC
Q 015149 324 WGSKPTPPGTS 334 (412)
Q Consensus 324 ~a~~~~~~~~~ 334 (412)
|+++.......
T Consensus 91 ~a~~~~~~~~~ 101 (115)
T 2dgo_A 91 WATRKPPAPKS 101 (115)
T ss_dssp ESSCCCCCSCC
T ss_pred EccCCCCCCcc
Confidence 99987765443
No 57
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-18 Score=130.65 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=73.9
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCC--eeCCeeeEEEec
Q 015149 248 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNAR--ILCGKPIKCSWG 325 (412)
Q Consensus 248 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~--~l~g~~l~V~~a 325 (412)
..++.++|||+|||.++++++|+++|++| |.|.+|.++++||||||+|.+.++|.+|++.|++. .|.|++|+|.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~f--G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKF--GTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTT--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 34556899999999999999999999999 99999999999999999999999999999988764 599999999999
Q ss_pred CCCCC
Q 015149 326 SKPTP 330 (412)
Q Consensus 326 ~~~~~ 330 (412)
+.+..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87654
No 58
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=6e-19 Score=134.04 Aligned_cols=93 Identities=28% Similarity=0.443 Sum_probs=82.4
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCCCCc
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE 127 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~~~~ 127 (412)
++|||+|||+++++++|+++|++||+|.+|.+..+ .+|||||+|.+.++|.+|++.|++..+.|+.|+|.++.++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 79 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 79 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc
Confidence 47999999999999999999999999999999887 78999999999999999999999999999999999998765322
Q ss_pred C-------CCCCceEEECCCC
Q 015149 128 D-------TSGHFNVFVGDLS 141 (412)
Q Consensus 128 ~-------~~~~~~l~v~nlp 141 (412)
. .....+|||+||+
T Consensus 80 ~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 80 RFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCCSCCCSCCCCSCCCSCCCC
T ss_pred cCCCCCccccCCCceecCCCC
Confidence 1 2235679999986
No 59
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=127.67 Aligned_cols=83 Identities=57% Similarity=0.977 Sum_probs=77.0
Q ss_pred CCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
.+.++|||+|||.++++++|+++|+.||.|.++++..++.++.++|||||+|.+.++|.+|++.|++..++|+.|.|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCC
Q 015149 210 AKG 212 (412)
Q Consensus 210 ~~~ 212 (412)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 60
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=5.4e-18 Score=132.02 Aligned_cols=92 Identities=54% Similarity=0.923 Sum_probs=84.7
Q ss_pred CCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 015149 125 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (412)
Q Consensus 125 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 204 (412)
...+....++|||+|||+++++++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456678899999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEEccCCCCCC
Q 015149 205 RCNWAAKGATSG 216 (412)
Q Consensus 205 ~v~~~~~~~~~~ 216 (412)
.|.|+.++....
T Consensus 88 ~V~~a~~~~~~~ 99 (115)
T 2dgo_A 88 RTNWATRKPPAP 99 (115)
T ss_dssp EEEESSCCCCCS
T ss_pred EEEEccCCCCCC
Confidence 999998775443
No 61
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.7e-18 Score=128.58 Aligned_cols=80 Identities=18% Similarity=0.344 Sum_probs=75.2
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeC--CeeeEEEecC
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILC--GKPIKCSWGS 326 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~--g~~l~V~~a~ 326 (412)
..+.++|||+|||.++++++|+++|++| |.|.+|.+.+++|||||+|.+.++|.+|++.|||..|. |+.|+|.|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRF--GSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTT--SCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 3455899999999999999999999999 99999999999999999999999999999999999999 9999999998
Q ss_pred CCCC
Q 015149 327 KPTP 330 (412)
Q Consensus 327 ~~~~ 330 (412)
++..
T Consensus 92 ~~~~ 95 (97)
T 1why_A 92 SGPS 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 62
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=131.08 Aligned_cols=89 Identities=17% Similarity=0.249 Sum_probs=77.1
Q ss_pred CCCCCCCCCCCCCCEEEEcCCCc-cCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCC--ccC
Q 015149 35 SGNLPPRFDASTCRSVYVGNIHP-QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR--HIF 111 (412)
Q Consensus 35 s~~~~~~~~~~~~~tl~V~nLp~-~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~--~~~ 111 (412)
|++........++++|||+|||+ +++++||+++|++||.|.+|+++++ ++||||+|.+.++|..|++.|++. .|.
T Consensus 3 ~~~~~~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 3 SGSSGQKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK--INEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCCCCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS--SSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCCCCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 34444555667889999999999 9999999999999999999999865 479999999999999999998864 599
Q ss_pred CceeEEEecccCCC
Q 015149 112 GQPIKVNWAYASSQ 125 (412)
Q Consensus 112 g~~l~v~~~~~~~~ 125 (412)
|++|+|.|+.....
T Consensus 81 Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 81 GKPVRVHLSQKYKR 94 (102)
T ss_dssp TEECEEEEECCCTT
T ss_pred CcEEEEEECCCCCC
Confidence 99999999986543
No 63
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=8.2e-18 Score=130.77 Aligned_cols=82 Identities=28% Similarity=0.439 Sum_probs=75.2
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
.+.++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMA--GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 445899999999999999999999999 99999999886 78999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 015149 325 GSKPTPPGT 333 (412)
Q Consensus 325 a~~~~~~~~ 333 (412)
++...+...
T Consensus 91 a~~~~~~~~ 99 (114)
T 2do0_A 91 DERALPKGD 99 (114)
T ss_dssp CSCCCCCSC
T ss_pred cccCCCCCC
Confidence 987655443
No 64
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=3.5e-18 Score=124.81 Aligned_cols=80 Identities=53% Similarity=0.908 Sum_probs=77.3
Q ss_pred ceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
.+|||+|||+++++++|+++|+.||.|.++.+..++.++.++|||||+|.+.++|..|++.++|..++|+.|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999765
No 65
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=130.81 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=74.2
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCC--CccCCceeEEEec
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG--RHIFGQPIKVNWA 120 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~--~~~~g~~l~v~~~ 120 (412)
.+.+.++|||+|||+++|+++|+++|++||+|.+|+++++ +|||||+|.+.++|.+|++.+++ ..+.|++|+|.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 3456789999999999999999999999999999999875 68999999999999999998864 7899999999999
Q ss_pred ccCCCCc
Q 015149 121 YASSQRE 127 (412)
Q Consensus 121 ~~~~~~~ 127 (412)
..+....
T Consensus 90 ~~~~~~~ 96 (105)
T 1sjq_A 90 NHKELKT 96 (105)
T ss_dssp SSSSCCC
T ss_pred CCCCCCc
Confidence 8765443
No 66
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.4e-18 Score=128.72 Aligned_cols=87 Identities=25% Similarity=0.341 Sum_probs=81.5
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
...+.++|||+|||+++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 015149 208 WAAKGAT 214 (412)
Q Consensus 208 ~~~~~~~ 214 (412)
++.++..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987644
No 67
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.4e-18 Score=129.22 Aligned_cols=90 Identities=38% Similarity=0.748 Sum_probs=80.3
Q ss_pred CCCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC--CCCEEEEEecCHHHHHHHHHHhCCCccCCceeE
Q 015149 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (412)
Q Consensus 39 ~~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~--~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~ 116 (412)
....+..+.++|||+|||+++++++|+++|++||+|.+|.+++++ ++|||||+|.+.++|.+|+..|++..|.|+.|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 7 GMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 344566778999999999999999999999999999999999864 468999999999999999999999999999999
Q ss_pred EEecccCCCCcC
Q 015149 117 VNWAYASSQRED 128 (412)
Q Consensus 117 v~~~~~~~~~~~ 128 (412)
|.|+.++.....
T Consensus 87 V~~a~~~~~~~~ 98 (103)
T 2cqi_A 87 VNWATTPSSQKS 98 (103)
T ss_dssp EEECCCTTCCCC
T ss_pred EEECCCCccccc
Confidence 999987665443
No 68
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.4e-18 Score=129.70 Aligned_cols=89 Identities=27% Similarity=0.446 Sum_probs=83.0
Q ss_pred CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
..+....++|||+|||+++++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 015149 206 CNWAAKGAT 214 (412)
Q Consensus 206 v~~~~~~~~ 214 (412)
|.++.++..
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999977643
No 69
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.6e-18 Score=127.19 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=73.3
Q ss_pred CcceEEEecCCCCCCHHHHH----HHHhhcCcccEEEEEeecc---ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 251 QYTTVYVGNLSSEVTSVDLH----RHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~----~~F~~~~~G~v~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
..++|||+|||.++++++|+ ++|++| |.|.+|++..+ +|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~--G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARH--GKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhcccc--CcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44799999999999999999 999999 99999999977 8999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 015149 324 WGSKPTP 330 (412)
Q Consensus 324 ~a~~~~~ 330 (412)
|+++...
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9976654
No 70
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=127.78 Aligned_cols=87 Identities=33% Similarity=0.454 Sum_probs=81.2
Q ss_pred CCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 015149 125 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (412)
Q Consensus 125 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 204 (412)
.+.+....++|||+|||+++++++|+++|+.||.|.++.+..++.+++++|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccC
Q 015149 205 RCNWAAK 211 (412)
Q Consensus 205 ~v~~~~~ 211 (412)
.|+++..
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999854
No 71
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6e-18 Score=130.34 Aligned_cols=80 Identities=38% Similarity=0.671 Sum_probs=75.4
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
...++|||+|||..+++++|+++|+.| |.|.+|++.+++|||||+|.+.++|.+|++.|||..|+|+.|+|.|+++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHH--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 345899999999999999999999999 999999999999999999999999999999999999999999999998776
Q ss_pred CC
Q 015149 330 PP 331 (412)
Q Consensus 330 ~~ 331 (412)
..
T Consensus 101 ~~ 102 (109)
T 1x4g_A 101 DM 102 (109)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 72
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.9e-18 Score=128.96 Aligned_cols=80 Identities=28% Similarity=0.508 Sum_probs=75.4
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCC
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~ 328 (412)
..+.++|||+|||..+++++|+++|+.| |.|.+|++.+++|||||+|.+.++|.+|++.|||..|+|+.|+|.|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKY--GKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTT--CCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhc--CCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 3455899999999999999999999999 99999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 015149 329 TP 330 (412)
Q Consensus 329 ~~ 330 (412)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 73
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.7e-18 Score=127.49 Aligned_cols=85 Identities=14% Similarity=0.238 Sum_probs=75.2
Q ss_pred CCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHh--CCCccCCceeEEE
Q 015149 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL--NGRHIFGQPIKVN 118 (412)
Q Consensus 41 ~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l--~~~~~~g~~l~v~ 118 (412)
.....++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+ ++..+.|++|+|.
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 445567899999999999999999999999999999988765 789999999999999999876 4678999999999
Q ss_pred ecccCCCCc
Q 015149 119 WAYASSQRE 127 (412)
Q Consensus 119 ~~~~~~~~~ 127 (412)
|+..+....
T Consensus 87 ~a~~~~~~~ 95 (101)
T 2cq1_A 87 YSNHKELKT 95 (101)
T ss_dssp ECSCSSCCC
T ss_pred EcCcccCcC
Confidence 998766543
No 74
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=127.48 Aligned_cols=81 Identities=21% Similarity=0.271 Sum_probs=72.7
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCc--cCCceeEEEe
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRH--IFGQPIKVNW 119 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~--~~g~~l~v~~ 119 (412)
....++++|||+|||+++|+++|+++|++||.|.+|++++ .+|+|||+|.+.++|.+|++.+++.. +.|++|+|.|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 3446789999999999999999999999999999999875 56899999999999999999999875 7899999999
Q ss_pred cccCC
Q 015149 120 AYASS 124 (412)
Q Consensus 120 ~~~~~ 124 (412)
++.+.
T Consensus 94 S~~k~ 98 (100)
T 3r27_A 94 STSQK 98 (100)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 97654
No 75
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.3e-18 Score=124.88 Aligned_cols=76 Identities=30% Similarity=0.618 Sum_probs=72.1
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHc-CCCeeCCeeeEEEecC
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMG-NARILCGKPIKCSWGS 326 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l-~g~~l~g~~l~V~~a~ 326 (412)
..+.++|||+|||..+++++|+++|++| |.|.+|++.+++|+|||+|.+.++|.+|++.| +|..++|++|+|.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~--G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQF--GEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTT--SCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhC--CCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3455899999999999999999999999 99999999999999999999999999999988 9999999999999985
No 76
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=131.11 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=71.9
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
++.++|||+||++++++++|+++|++| |.|.+|+|++| +|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~--G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKY--GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345899999999999999999999999 99999999865 6899999999999999999999999999999999
Q ss_pred ecCCC
Q 015149 324 WGSKP 328 (412)
Q Consensus 324 ~a~~~ 328 (412)
+++..
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 98654
No 77
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=2.7e-18 Score=142.59 Aligned_cols=125 Identities=17% Similarity=0.304 Sum_probs=80.3
Q ss_pred EEecCHHHHHHHHHHhCCCccC--CceeEEEecccC-----------------CCCcCCCCCceEEECCCCccccHHHHH
Q 015149 90 VDYFDRRSAALAIVTLNGRHIF--GQPIKVNWAYAS-----------------SQREDTSGHFNVFVGDLSPEVTDATLF 150 (412)
Q Consensus 90 V~f~~~~~A~~Al~~l~~~~~~--g~~l~v~~~~~~-----------------~~~~~~~~~~~l~v~nlp~~~~~~~l~ 150 (412)
.+|.+.++|..++..+++.... |+.+...+.... .........++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999887665 665655543211 011223456789999999999999999
Q ss_pred HHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 015149 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGAT 214 (412)
Q Consensus 151 ~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~ 214 (412)
++|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..|++..|.|+.|.|.|+..+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999976543
No 78
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=130.02 Aligned_cols=76 Identities=18% Similarity=0.381 Sum_probs=69.4
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcc--cEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCC----eeCC
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVG--TIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNAR----ILCG 317 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G--~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~----~l~g 317 (412)
...++|||+|||+.+|+++|+++|++| | .|.+|++++| ||||||+|.+.++|.+|++.|||. .|+|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~--G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPY--ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTT--CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhh--CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 345899999999999999999999999 7 5678999876 789999999999999999999997 5899
Q ss_pred eeeEEEecCC
Q 015149 318 KPIKCSWGSK 327 (412)
Q Consensus 318 ~~l~V~~a~~ 327 (412)
|+|+|+||++
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999985
No 79
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=9.1e-19 Score=129.93 Aligned_cols=76 Identities=20% Similarity=0.393 Sum_probs=69.5
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcc-cEEEEEeecc------ccEEEEEeCCHHHHHHHHHHc-CCCeeCCeeeEEEe
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVG-TIEDVRVQRD------KGFGFVRYSTHPEAALAIQMG-NARILCGKPIKCSW 324 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G-~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l-~g~~l~g~~l~V~~ 324 (412)
++|||+|||+++|+++|+++|+.| | .|.+|++++| ||||||+|.+.++|.+|++.+ |+..|+|++|+|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~--G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSH--GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHH--TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHh--CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 689999999999999999999999 8 8999999876 799999999999999999987 45689999999999
Q ss_pred cCCCCC
Q 015149 325 GSKPTP 330 (412)
Q Consensus 325 a~~~~~ 330 (412)
++++..
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 987654
No 80
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-17 Score=127.85 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=74.6
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc---ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
..+.++|||+|||.++++++|+++|+.| |.|.+|.+..+ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKY--GAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3455899999999999999999999999 99999999876 689999999999999999999999999999999999
Q ss_pred CCCCCC
Q 015149 326 SKPTPP 331 (412)
Q Consensus 326 ~~~~~~ 331 (412)
++....
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876543
No 81
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=127.58 Aligned_cols=91 Identities=24% Similarity=0.300 Sum_probs=80.7
Q ss_pred CCCCCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC--CCCEEEEEecCHHHHHHHHHHhCCCccCCce
Q 015149 37 NLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (412)
Q Consensus 37 ~~~~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~--~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~ 114 (412)
.........+.++|||+|||+++++++|+++|++||+|.+|.+..++ .++||||+|.+.++|.+|+..|++..|.|+.
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 5 SSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 33444566778999999999999999999999999999999998875 3789999999999999999999999999999
Q ss_pred eEEEecccCCCCc
Q 015149 115 IKVNWAYASSQRE 127 (412)
Q Consensus 115 l~v~~~~~~~~~~ 127 (412)
|+|.++.++....
T Consensus 85 l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 85 IEVNNATARVMTN 97 (103)
T ss_dssp CEEEECCSSCCCC
T ss_pred EEEEEcccCCCCC
Confidence 9999998776443
No 82
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=1.1e-18 Score=139.51 Aligned_cols=120 Identities=23% Similarity=0.366 Sum_probs=75.4
Q ss_pred EEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceE
Q 015149 176 FGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTV 255 (412)
Q Consensus 176 ~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 255 (412)
+.|++|++...+..|+..+++....|+.- +.+. ..+....+.++|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~----------------------------------~~~~~~~~~~~l 50 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYG----------------------------------RPPPDVEGMTSL 50 (135)
T ss_dssp ------------------------------CCSC----------------------------------CSCSSGGGCCCE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcC----------------------------------CCCCCCCCCCEE
Confidence 57888889999999999887765554421 0000 011122334789
Q ss_pred EEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 256 YVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 256 ~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|+.|+|.|+++..
T Consensus 51 ~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 51 KVDNLTYRTSPDTLRRVFEKY--GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp EEECCCSSCHHHHHHHHHGGG--SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred EEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 999999999999999999999 99999999865 6899999999999999999999999999999999998766
Q ss_pred CCC
Q 015149 330 PPG 332 (412)
Q Consensus 330 ~~~ 332 (412)
++.
T Consensus 129 ~~~ 131 (135)
T 2lea_A 129 PPD 131 (135)
T ss_dssp CCT
T ss_pred CCc
Confidence 543
No 83
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.6e-18 Score=127.38 Aligned_cols=87 Identities=21% Similarity=0.454 Sum_probs=80.9
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
.....++|||+|||.++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EccCCCCC
Q 015149 208 WAAKGATS 215 (412)
Q Consensus 208 ~~~~~~~~ 215 (412)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876443
No 84
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=5.3e-18 Score=132.01 Aligned_cols=88 Identities=30% Similarity=0.473 Sum_probs=81.8
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
......++|||+|||+++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456689999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 015149 207 NWAAKGAT 214 (412)
Q Consensus 207 ~~~~~~~~ 214 (412)
+|+.++..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99976643
No 85
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7e-18 Score=126.58 Aligned_cols=85 Identities=33% Similarity=0.555 Sum_probs=80.3
Q ss_pred CCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
.+.++|||+|||+++++++|+++|+.||.|.++++..++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 015149 210 AKGAT 214 (412)
Q Consensus 210 ~~~~~ 214 (412)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 77644
No 86
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=3.6e-18 Score=125.34 Aligned_cols=82 Identities=38% Similarity=0.546 Sum_probs=78.0
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
..+.++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|.+|++.+++..++|+.|.|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 015149 209 AA 210 (412)
Q Consensus 209 ~~ 210 (412)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 87
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=4.3e-18 Score=127.95 Aligned_cols=82 Identities=29% Similarity=0.622 Sum_probs=78.5
Q ss_pred CceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 015149 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (412)
Q Consensus 132 ~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 211 (412)
+++|||+|||.++++++|+++|+.||.|.++++..++.+|.++|||||+|.+.++|.+|++.++|..++|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CC
Q 015149 212 GA 213 (412)
Q Consensus 212 ~~ 213 (412)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 88
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-17 Score=126.50 Aligned_cols=81 Identities=32% Similarity=0.579 Sum_probs=74.9
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
..+.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQI--GPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhc--CCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3455899999999999999999999999 99999999985 68999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 015149 325 GSKPTPP 331 (412)
Q Consensus 325 a~~~~~~ 331 (412)
++++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9876543
No 89
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=9.3e-18 Score=127.16 Aligned_cols=86 Identities=19% Similarity=0.377 Sum_probs=80.0
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
......++|||+|||+++++++|+++|+.||.|.++++..++ +++++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567889999999999999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred EEccCCC
Q 015149 207 NWAAKGA 213 (412)
Q Consensus 207 ~~~~~~~ 213 (412)
.++.++.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9997654
No 90
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.1e-18 Score=127.62 Aligned_cols=86 Identities=34% Similarity=0.694 Sum_probs=80.6
Q ss_pred CCCceEEECCCCccccHHHHHHHhhcCCCeeeE-EEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~-~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
.+.++|||+|||+++++++|+++|+.||.|.++ +++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456799999999999999999999999999999 9999989999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 015149 209 AAKGATS 215 (412)
Q Consensus 209 ~~~~~~~ 215 (412)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9776433
No 91
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.2e-18 Score=128.68 Aligned_cols=88 Identities=35% Similarity=0.478 Sum_probs=81.9
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
.....++|||+|||+++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 015149 208 WAAKGATS 215 (412)
Q Consensus 208 ~~~~~~~~ 215 (412)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99776443
No 92
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.4e-18 Score=129.33 Aligned_cols=89 Identities=28% Similarity=0.406 Sum_probs=82.9
Q ss_pred CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
..+....++|||+|||+++++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556778999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 015149 206 CNWAAKGAT 214 (412)
Q Consensus 206 v~~~~~~~~ 214 (412)
|.++.++..
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999977644
No 93
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=124.16 Aligned_cols=78 Identities=22% Similarity=0.357 Sum_probs=73.0
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
.+.++|||+|||.++++++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|++.|||..|+|+.|+|.|++++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQY--GKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTS--SCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 445899999999999999999999999 999999998 7899999999999999999999999999999999998776
Q ss_pred CC
Q 015149 330 PP 331 (412)
Q Consensus 330 ~~ 331 (412)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 94
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=126.34 Aligned_cols=80 Identities=23% Similarity=0.338 Sum_probs=74.4
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
.+.++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAY--GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345899999999999999999999999 99999999876 5999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 015149 324 WGSKPTPP 331 (412)
Q Consensus 324 ~a~~~~~~ 331 (412)
|++++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99887654
No 95
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-17 Score=125.89 Aligned_cols=82 Identities=23% Similarity=0.367 Sum_probs=75.6
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 248 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 248 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
.....++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGT--SCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34455899999999999999999999999 99999999987 7999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 015149 324 WGSKPTPP 331 (412)
Q Consensus 324 ~a~~~~~~ 331 (412)
|++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99876543
No 96
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.9e-18 Score=128.99 Aligned_cols=91 Identities=23% Similarity=0.420 Sum_probs=80.9
Q ss_pred CCCCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeec--CCCCEEEEEecCHHHHHHHHHHhCCCccCCcee
Q 015149 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK--DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPI 115 (412)
Q Consensus 38 ~~~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~--~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l 115 (412)
........+.++|||+|||+++++++|+++|++||+|.+|.+..+ ..++||||+|.+.++|.+|+..||+..|.|+.|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 6 SGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 334455667899999999999999999999999999999999987 457899999999999999999999999999999
Q ss_pred EEEecccCCCCcC
Q 015149 116 KVNWAYASSQRED 128 (412)
Q Consensus 116 ~v~~~~~~~~~~~ 128 (412)
+|.++.++..+..
T Consensus 86 ~V~~a~~~~~~~~ 98 (103)
T 2d9p_A 86 YVALAQRKEERQS 98 (103)
T ss_dssp EEEECSSCCCCCC
T ss_pred EEEEecccccCCC
Confidence 9999987765443
No 97
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5e-18 Score=130.14 Aligned_cols=85 Identities=22% Similarity=0.436 Sum_probs=80.3
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
....+++|||+|||+++++++|+++|+.||.|.++.+..++.+|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCC
Q 015149 208 WAAKG 212 (412)
Q Consensus 208 ~~~~~ 212 (412)
++.++
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 98765
No 98
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=125.39 Aligned_cols=80 Identities=28% Similarity=0.493 Sum_probs=74.4
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
+.++|||+|||.++++++|+++|+.| |.|.+|++.++ +|+|||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPF--GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 44899999999999999999999999 99999999876 68999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 015149 325 GSKPTPPG 332 (412)
Q Consensus 325 a~~~~~~~ 332 (412)
++++....
T Consensus 82 a~~~~~~~ 89 (95)
T 2dnz_A 82 VTERLDGG 89 (95)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 98776543
No 99
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.4e-18 Score=128.81 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=73.1
Q ss_pred CCCcceEEEecCCCC-CCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcC--CCeeCCeeeEEEec
Q 015149 249 NPQYTTVYVGNLSSE-VTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGN--ARILCGKPIKCSWG 325 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~-~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~--g~~l~g~~l~V~~a 325 (412)
..+.++|||+|||++ +++++|+++|++| |.|.+|+++++||||||+|.+.++|.+|++.|| +..|.||+|+|.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~f--G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPY--GKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTT--SCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhc--CCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 445689999999998 9999999999999 999999999999999999999999999999886 45699999999999
Q ss_pred CCCCC
Q 015149 326 SKPTP 330 (412)
Q Consensus 326 ~~~~~ 330 (412)
+....
T Consensus 100 ~~~~~ 104 (112)
T 1x4f_A 100 EKYKK 104 (112)
T ss_dssp CSCSS
T ss_pred ccccc
Confidence 86654
No 100
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=8.7e-19 Score=130.01 Aligned_cols=81 Identities=16% Similarity=0.251 Sum_probs=72.8
Q ss_pred ceEEECCCCccccHHHHHHHhhcCC--CeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 133 FNVFVGDLSPEVTDATLFACFSVFP--TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~l~~~f~~~G--~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
.+|||+|||+++++++|+++|+.|| .|.+++++.|+.+|+++|||||+|.+.++|.+|++.++|..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4699999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 015149 211 KGA 213 (412)
Q Consensus 211 ~~~ 213 (412)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 101
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.7e-18 Score=129.54 Aligned_cols=88 Identities=27% Similarity=0.438 Sum_probs=82.1
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
.+....++|||+|||+++++++|+++|+.||.|.++.+..++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 015149 207 NWAAKGAT 214 (412)
Q Consensus 207 ~~~~~~~~ 214 (412)
+++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99976543
No 102
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.8e-18 Score=128.54 Aligned_cols=89 Identities=30% Similarity=0.555 Sum_probs=79.7
Q ss_pred CCCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCce
Q 015149 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (412)
Q Consensus 39 ~~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~ 114 (412)
++..+..+.++|||+|||+++++++|+++|++||+|.+|.+..++ .+|||||+|.+.++|.+|++.|++..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 7 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 344556778999999999999999999999999999999998865 4689999999999999999999999999999
Q ss_pred eEEEecccCCCCc
Q 015149 115 IKVNWAYASSQRE 127 (412)
Q Consensus 115 l~v~~~~~~~~~~ 127 (412)
|+|.++.++....
T Consensus 87 l~v~~a~~~~~~~ 99 (105)
T 1x5u_A 87 IRVNKASAHNKNL 99 (105)
T ss_dssp CEEEETTTTSCCC
T ss_pred EEEEECCCCCcCC
Confidence 9999998776543
No 103
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=1.4e-17 Score=129.65 Aligned_cols=83 Identities=27% Similarity=0.367 Sum_probs=75.5
Q ss_pred CCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeee
Q 015149 247 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPI 320 (412)
Q Consensus 247 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l 320 (412)
...++.++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|+.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPF--GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGG--SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 344556899999999999999999999999 99999999876 4899999999999999999999999999999
Q ss_pred EEEecCCCCCC
Q 015149 321 KCSWGSKPTPP 331 (412)
Q Consensus 321 ~V~~a~~~~~~ 331 (412)
+|.|++++...
T Consensus 98 ~V~~a~~~~~~ 108 (115)
T 2cpz_A 98 KVQLKRSKNDS 108 (115)
T ss_dssp EEECCCCSCCC
T ss_pred EEEEcCCCCcC
Confidence 99999877543
No 104
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.8e-18 Score=125.78 Aligned_cols=83 Identities=27% Similarity=0.424 Sum_probs=78.4
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
.....++|||+|||+++++++|+++|+.||.|.++.+..++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ecc
Q 015149 208 WAA 210 (412)
Q Consensus 208 ~~~ 210 (412)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 973
No 105
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=9.6e-18 Score=127.07 Aligned_cols=83 Identities=18% Similarity=0.145 Sum_probs=73.3
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCC--ccCCceeEEEec
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR--HIFGQPIKVNWA 120 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~--~~~g~~l~v~~~ 120 (412)
...++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .+.|++|+|.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 4456789999999999999999999999999999988764 689999999999999999988654 599999999999
Q ss_pred ccCCCCc
Q 015149 121 YASSQRE 127 (412)
Q Consensus 121 ~~~~~~~ 127 (412)
..+....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wex_A 89 TSKRITR 95 (104)
T ss_dssp SSSSCCC
T ss_pred cCccccC
Confidence 8765443
No 106
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.3e-18 Score=129.68 Aligned_cols=85 Identities=14% Similarity=0.219 Sum_probs=75.7
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhC--CCccCCceeEEEec
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN--GRHIFGQPIKVNWA 120 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~--~~~~~g~~l~v~~~ 120 (412)
...++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.++ +..+.|++|+|.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 4466899999999999999999999999999999999876 6899999999999999999887 46899999999999
Q ss_pred ccCCCCcCC
Q 015149 121 YASSQREDT 129 (412)
Q Consensus 121 ~~~~~~~~~ 129 (412)
..+......
T Consensus 105 ~~k~~~~~~ 113 (119)
T 2ad9_A 105 NHKELKTDS 113 (119)
T ss_dssp SSSSCCCCC
T ss_pred cCCCCCccc
Confidence 877654433
No 107
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=6.9e-18 Score=129.46 Aligned_cols=87 Identities=30% Similarity=0.583 Sum_probs=81.5
Q ss_pred CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
.......++|||+|||+.+++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|.+|++.++|..+.|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCC
Q 015149 206 CNWAAKG 212 (412)
Q Consensus 206 v~~~~~~ 212 (412)
|.++.++
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9998765
No 108
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=5.7e-18 Score=121.02 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
.+..|+|+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356799999999999999999999999999999866 6899999999999999999999999999999999977
No 109
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=129.10 Aligned_cols=89 Identities=26% Similarity=0.362 Sum_probs=82.4
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC------CceeC
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN------GKWLG 200 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~------~~~~~ 200 (412)
......++|||+|||+++++++|+++|+.||.|.+++++.|+.++.++|||||+|.+.++|.+|++.++ +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345567899999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CeEEEEEEccCCCCC
Q 015149 201 NRQIRCNWAAKGATS 215 (412)
Q Consensus 201 g~~l~v~~~~~~~~~ 215 (412)
|+.|.|.++.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999776433
No 110
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-17 Score=127.53 Aligned_cols=88 Identities=20% Similarity=0.367 Sum_probs=78.7
Q ss_pred CCCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC-CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEE
Q 015149 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (412)
Q Consensus 39 ~~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~-~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v 117 (412)
+......+.++|||+|||+++++++|+++|++||+|.+|.+..++ .++||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 14 IRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp SSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344456678999999999999999999999999999999997765 4789999999999999999999999999999999
Q ss_pred EecccCCCC
Q 015149 118 NWAYASSQR 126 (412)
Q Consensus 118 ~~~~~~~~~ 126 (412)
.|+.+....
T Consensus 94 ~~a~~~~~~ 102 (109)
T 1x4a_A 94 EFPRSGRGT 102 (109)
T ss_dssp ECCCCCCCC
T ss_pred EEcccCCCC
Confidence 999876543
No 111
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=126.93 Aligned_cols=82 Identities=27% Similarity=0.435 Sum_probs=75.2
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEE
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V 322 (412)
..+.++|||+|||..+++++|+++|+.| |.|.+|.+.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPF--GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTT--CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3455899999999999999999999999 99999999876 589999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 015149 323 SWGSKPTPPG 332 (412)
Q Consensus 323 ~~a~~~~~~~ 332 (412)
.|++++....
T Consensus 90 ~~a~~~~~~~ 99 (103)
T 2cq0_A 90 EWAKPSTNSG 99 (103)
T ss_dssp EESSCCCCSC
T ss_pred EECCCCCCCC
Confidence 9998776543
No 112
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=1.9e-18 Score=130.69 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=78.0
Q ss_pred CCCceEEECCCCc------cccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC-e
Q 015149 130 SGHFNVFVGDLSP------EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN-R 202 (412)
Q Consensus 130 ~~~~~l~v~nlp~------~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g-~ 202 (412)
..+++|||+|||+ ++++++|+++|++||.|.+++++.|+.||+++|||||+|.+.++|.+|++.|+|..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467899999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEEEccC
Q 015149 203 QIRCNWAAK 211 (412)
Q Consensus 203 ~l~v~~~~~ 211 (412)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999864
No 113
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=125.89 Aligned_cols=79 Identities=23% Similarity=0.435 Sum_probs=72.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc---------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeE
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 321 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~---------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~ 321 (412)
+.++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKV--GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 44899999999999999999999999 99999999853 57999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q 015149 322 CSWGSKPTPP 331 (412)
Q Consensus 322 V~~a~~~~~~ 331 (412)
|.|+++...+
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876654
No 114
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=9.6e-18 Score=123.03 Aligned_cols=75 Identities=33% Similarity=0.561 Sum_probs=70.7
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
.+.++|||+|||.++++++|+++|++| |.|.++.+.++ +|+|||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhcc--CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345899999999999999999999999 99999999765 7999999999999999999999999999999999
Q ss_pred ecC
Q 015149 324 WGS 326 (412)
Q Consensus 324 ~a~ 326 (412)
|++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 115
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=7.6e-18 Score=124.17 Aligned_cols=76 Identities=36% Similarity=0.639 Sum_probs=70.2
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
+.++|||+|||.++++++|+++|+.| |.|.++++.++ +|+|||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 44899999999999999999999999 99999999876 68999999999999999999999999999999999
Q ss_pred cCCC
Q 015149 325 GSKP 328 (412)
Q Consensus 325 a~~~ 328 (412)
++++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9765
No 116
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=3.7e-17 Score=124.49 Aligned_cols=79 Identities=24% Similarity=0.423 Sum_probs=72.7
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
.+.++|||+|||.++++++|+++|+.| |.|.+|++. ++||||+|.+.++|.+|++.|||..|.|+.|+|.|++++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQF--GKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHH--SCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 345899999999999999999999999 999999998 4599999999999999999999999999999999998776
Q ss_pred CCC
Q 015149 330 PPG 332 (412)
Q Consensus 330 ~~~ 332 (412)
...
T Consensus 85 ~~~ 87 (103)
T 2dgu_A 85 QKR 87 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 117
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-17 Score=126.38 Aligned_cols=78 Identities=21% Similarity=0.280 Sum_probs=73.8
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCC-----eeeEEEec
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCG-----KPIKCSWG 325 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g-----~~l~V~~a 325 (412)
..++|||+|||.++++++|+++|+.| |.|.+|.+..+ |||||+|.+.++|.+|++.|||..|.| +.|+|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 45899999999999999999999999 99999999998 999999999999999999999999999 99999999
Q ss_pred CCCCCC
Q 015149 326 SKPTPP 331 (412)
Q Consensus 326 ~~~~~~ 331 (412)
+++...
T Consensus 91 ~~~~~~ 96 (108)
T 1x4c_A 91 GPRSPS 96 (108)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 886653
No 118
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=126.66 Aligned_cols=85 Identities=25% Similarity=0.366 Sum_probs=79.5
Q ss_pred CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeee--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc
Q 015149 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD--------ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197 (412)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~--------~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~ 197 (412)
.......++|||+|||+++++++|+++|+.||.|.+ +++..++.+|+++|||||+|.+.++|.+|++.|+|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344566789999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred eeCCeEEEEEEcc
Q 015149 198 WLGNRQIRCNWAA 210 (412)
Q Consensus 198 ~~~g~~l~v~~~~ 210 (412)
.+.|+.|+|+++.
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999873
No 119
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.6e-18 Score=128.18 Aligned_cols=88 Identities=40% Similarity=0.585 Sum_probs=81.9
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
.....++|||+|||+++++++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 015149 208 WAAKGATS 215 (412)
Q Consensus 208 ~~~~~~~~ 215 (412)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99776443
No 120
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=1.2e-17 Score=121.98 Aligned_cols=75 Identities=25% Similarity=0.533 Sum_probs=71.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
.+|||+|||.++++++|+++|+.| |.|.++.+.++ +|+|||+|.+.++|.+|++.|||..|+|+.|+|.|++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS--TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 689999999999999999999999 99999999877 7999999999999999999999999999999999998
Q ss_pred CCC
Q 015149 327 KPT 329 (412)
Q Consensus 327 ~~~ 329 (412)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 121
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.1e-17 Score=125.18 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=73.9
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
..+.++|||+|||..+++++|+++|+.| |.|.+|++..+ +|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAH--GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3455899999999999999999999999 99999999876 5999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 015149 324 WGSKPTP 330 (412)
Q Consensus 324 ~a~~~~~ 330 (412)
|++++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987654
No 122
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=127.63 Aligned_cols=89 Identities=27% Similarity=0.434 Sum_probs=82.1
Q ss_pred CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeec-CCCCCcccEEEEEecCHHHHHHHHHHh-CCceeCCeE
Q 015149 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD-QKTGRSRGFGFVSFRNQEDAQSAINDL-NGKWLGNRQ 203 (412)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d-~~~~~~~g~afV~f~~~~~A~~ai~~l-~~~~~~g~~ 203 (412)
.......++|||+|||+++++++|+++|+.||.|..++++.+ +.++.++|||||+|.+.++|.+|+..| ++..|.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344566789999999999999999999999999999999998 789999999999999999999999999 999999999
Q ss_pred EEEEEccCCCC
Q 015149 204 IRCNWAAKGAT 214 (412)
Q Consensus 204 l~v~~~~~~~~ 214 (412)
|.|.|+.++..
T Consensus 89 l~v~~a~~~~~ 99 (107)
T 2cph_A 89 LVLEWADSEVT 99 (107)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99999977644
No 123
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=1.7e-17 Score=126.88 Aligned_cols=87 Identities=23% Similarity=0.399 Sum_probs=80.0
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC---eE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN---RQ 203 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g---~~ 203 (412)
......++|||+|||+++++++|+++|+.||.|.++++..++ ++.++|||||+|.+.++|.+|++.|++..+.| +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 344567899999999999999999999999999999999996 79999999999999999999999999999988 99
Q ss_pred EEEEEccCCCC
Q 015149 204 IRCNWAAKGAT 214 (412)
Q Consensus 204 l~v~~~~~~~~ 214 (412)
|.|.++..+..
T Consensus 89 l~V~~a~~~~~ 99 (105)
T 2dnh_A 89 LVVKFADTDKE 99 (105)
T ss_dssp CEEEESCSSCC
T ss_pred EEEEECccCcc
Confidence 99999977643
No 124
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=126.13 Aligned_cols=86 Identities=27% Similarity=0.414 Sum_probs=77.9
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEE
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v 117 (412)
....+.++|||+|||+++++++|+++|++||+|.+|.+++++ .+|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345678999999999999999999999999999999998864 4789999999999999999999999999999999
Q ss_pred EecccCCCCc
Q 015149 118 NWAYASSQRE 127 (412)
Q Consensus 118 ~~~~~~~~~~ 127 (412)
.++.++....
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 1x5s_A 87 DQAGKSSDNR 96 (102)
T ss_dssp EEEECCCCCC
T ss_pred EECCCCCCCC
Confidence 9998766543
No 125
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=124.68 Aligned_cols=79 Identities=18% Similarity=0.428 Sum_probs=73.0
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
.+.++|||+|||..+++++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|++ |||..|+|+.|+|.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKF--GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSS--SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 445899999999999999999999999 99999999875 6999999999999999998 89999999999999
Q ss_pred ecCCCCCC
Q 015149 324 WGSKPTPP 331 (412)
Q Consensus 324 ~a~~~~~~ 331 (412)
|++++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876543
No 126
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=126.51 Aligned_cols=89 Identities=31% Similarity=0.559 Sum_probs=81.4
Q ss_pred CCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 015149 125 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (412)
Q Consensus 125 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 204 (412)
........++|||+|||+++++++|+++|+.||.|.++++..+ ++.++|||||+|.+.++|..|+..|++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3445567789999999999999999999999999999999988 78999999999999999999999999999999999
Q ss_pred EEEEccCCCCC
Q 015149 205 RCNWAAKGATS 215 (412)
Q Consensus 205 ~v~~~~~~~~~ 215 (412)
.|.++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2d9p_A 86 YVALAQRKEER 96 (103)
T ss_dssp EEEECSSCCCC
T ss_pred EEEEecccccC
Confidence 99999876543
No 127
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=125.18 Aligned_cols=83 Identities=22% Similarity=0.292 Sum_probs=75.9
Q ss_pred CCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 41 ~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
.......++|||+|||+++++++|+++|++||+|. +.++.++.+|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 13 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 13 GEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34456678999999999999999999999999997 77888888999999999999999999999999999999999999
Q ss_pred ccCC
Q 015149 121 YASS 124 (412)
Q Consensus 121 ~~~~ 124 (412)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 128
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9.8e-18 Score=126.56 Aligned_cols=85 Identities=25% Similarity=0.417 Sum_probs=78.7
Q ss_pred CCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCC---CCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQK---TGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~---~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
.+.++|||+|||+++++++|+++|+.||.|..+++..++. ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4567899999999999999999999999999999998876 6689999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 015149 207 NWAAKGAT 214 (412)
Q Consensus 207 ~~~~~~~~ 214 (412)
+++.++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99976643
No 129
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=5e-18 Score=128.90 Aligned_cols=76 Identities=32% Similarity=0.545 Sum_probs=72.6
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCC
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~ 328 (412)
..++|||+|||.++++++|+++|+.| |.|.++++.+++|||||+|.+.++|.+|+..|||..|+|+.|+|.|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF--GFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT--SCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC--CCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 34899999999999999999999999 99999999999999999999999999999999999999999999999763
No 130
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=124.04 Aligned_cols=76 Identities=33% Similarity=0.475 Sum_probs=71.2
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEE
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V 322 (412)
.++.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|+|||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKY--GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTT--SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3455899999999999999999999999 99999999876 689999999999999999999999999999999
Q ss_pred EecC
Q 015149 323 SWGS 326 (412)
Q Consensus 323 ~~a~ 326 (412)
.|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 131
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=127.13 Aligned_cols=80 Identities=31% Similarity=0.500 Sum_probs=74.3
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
.+.++|||+|||..+++++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTT--SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 355899999999999999999999999 99999999876 7999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 015149 324 WGSKPTPP 331 (412)
Q Consensus 324 ~a~~~~~~ 331 (412)
|++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99876653
No 132
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=5.8e-18 Score=129.61 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=69.8
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcc-cEEEEEeec--cccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCC
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVG-TIEDVRVQR--DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G-~v~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~ 328 (412)
..+|||+|||+++++++|+++|+.| | .|..+.+.. .+|||||+|.+.++|.+|++.|||..|+|+.|+|.+++.+
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~--G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLAREN--SLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHH--TCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHh--CCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4799999999999999999999999 9 899999963 4899999999999999999999999999999999998755
Q ss_pred C
Q 015149 329 T 329 (412)
Q Consensus 329 ~ 329 (412)
.
T Consensus 106 p 106 (111)
T 2jvr_A 106 P 106 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 133
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.5e-18 Score=129.03 Aligned_cols=84 Identities=25% Similarity=0.338 Sum_probs=76.5
Q ss_pred CCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC--CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEE
Q 015149 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (412)
Q Consensus 40 ~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~--~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v 117 (412)
+.....+.++|||+|||.++++++|+++|++||+|.+|.+..++ .+|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33456678899999999999999999999999999999998764 4789999999999999999999999999999999
Q ss_pred EecccC
Q 015149 118 NWAYAS 123 (412)
Q Consensus 118 ~~~~~~ 123 (412)
+++.++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998765
No 134
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=129.38 Aligned_cols=85 Identities=33% Similarity=0.512 Sum_probs=79.6
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
....++|||+|||+++++++|+++|+.||.|.++.+..++ +|.++|||||+|.+.++|.+|++.|++..+.|+.|.|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4556899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015149 209 AAKGAT 214 (412)
Q Consensus 209 ~~~~~~ 214 (412)
+.+...
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 976643
No 135
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.8e-17 Score=126.29 Aligned_cols=82 Identities=27% Similarity=0.494 Sum_probs=74.2
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeE
Q 015149 248 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 321 (412)
Q Consensus 248 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~ 321 (412)
...+.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|++ .|.|+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGF--GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTT--SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34456899999999999999999999999 99999999876 68999999999999999999998 89999999
Q ss_pred EEecCCCCCCC
Q 015149 322 CSWGSKPTPPG 332 (412)
Q Consensus 322 V~~a~~~~~~~ 332 (412)
|.|++....+.
T Consensus 90 V~~a~~~~~~~ 100 (116)
T 2cqd_A 90 VNLAYLGAKPR 100 (116)
T ss_dssp EEESTTTCCCC
T ss_pred EEEcccCCCcc
Confidence 99998765443
No 136
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=125.09 Aligned_cols=85 Identities=22% Similarity=0.393 Sum_probs=76.7
Q ss_pred CCCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 39 ~~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
+......+.++|||+|||+++++++|+++|++||+|.+|.+.+ ++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 7 GGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3444556789999999999999999999999999999999875 46899999999999999999999999999999999
Q ss_pred ecccCCC
Q 015149 119 WAYASSQ 125 (412)
Q Consensus 119 ~~~~~~~ 125 (412)
|+.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpj_A 85 FACHSAS 91 (99)
T ss_dssp ESSCCSC
T ss_pred EcCCCCC
Confidence 9987654
No 137
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=6.3e-18 Score=132.28 Aligned_cols=85 Identities=33% Similarity=0.514 Sum_probs=79.3
Q ss_pred CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
..+....++|||+|||+++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|.+|++.|++..++|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcc
Q 015149 206 CNWAA 210 (412)
Q Consensus 206 v~~~~ 210 (412)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99873
No 138
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=128.58 Aligned_cols=88 Identities=22% Similarity=0.336 Sum_probs=82.0
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCee--------eEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCce
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCS--------DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~--------~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~ 198 (412)
.+....++|||+|||+++++++|+++|+.||.|. .++++.++.+++++|||||+|.+.++|.+|++.|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 4556778999999999999999999999999999 69999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEccCCCC
Q 015149 199 LGNRQIRCNWAAKGAT 214 (412)
Q Consensus 199 ~~g~~l~v~~~~~~~~ 214 (412)
|.|+.|.|.++..+..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999977644
No 139
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.5e-17 Score=123.06 Aligned_cols=81 Identities=22% Similarity=0.408 Sum_probs=73.5
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCC
Q 015149 248 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327 (412)
Q Consensus 248 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~ 327 (412)
...+.++|||+|||..+++++|+++|+.|+.|.|.+|++. +|||||+|.+.++|.+|+..|||..|+|+.|+|.|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 3445689999999999999999999999966789988876 67999999999999999999999999999999999987
Q ss_pred CCC
Q 015149 328 PTP 330 (412)
Q Consensus 328 ~~~ 330 (412)
...
T Consensus 89 ~~~ 91 (99)
T 2cpd_A 89 VDK 91 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 140
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=2.4e-17 Score=126.07 Aligned_cols=80 Identities=25% Similarity=0.431 Sum_probs=74.5
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCC---eeeE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCG---KPIK 321 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g---~~l~ 321 (412)
.+.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..+.| +.|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPF--GVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 456899999999999999999999999 99999999987 7999999999999999999999999988 9999
Q ss_pred EEecCCCCCC
Q 015149 322 CSWGSKPTPP 331 (412)
Q Consensus 322 V~~a~~~~~~ 331 (412)
|.|+++....
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999877654
No 141
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=1.2e-17 Score=124.51 Aligned_cols=80 Identities=24% Similarity=0.352 Sum_probs=74.1
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
.+.++|||+|||.++++++|+++|+.| |.|.++++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNEC--GHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTT--SCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 455899999999999999999999999 99999999874 799999999999999999999999999999999999
Q ss_pred CCCCCC
Q 015149 326 SKPTPP 331 (412)
Q Consensus 326 ~~~~~~ 331 (412)
++...+
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 876543
No 142
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-17 Score=126.28 Aligned_cols=81 Identities=21% Similarity=0.468 Sum_probs=74.9
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-------ccEEEEEeCCHHHHHHHHHHc-CCCeeCCeee
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-------KGFGFVRYSTHPEAALAIQMG-NARILCGKPI 320 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l-~g~~l~g~~l 320 (412)
....++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.| ||..|.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTF--GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHcc--CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 3455899999999999999999999999 99999999877 799999999999999999999 9999999999
Q ss_pred EEEecCCCCCC
Q 015149 321 KCSWGSKPTPP 331 (412)
Q Consensus 321 ~V~~a~~~~~~ 331 (412)
+|.|+++....
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876543
No 143
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=1.2e-17 Score=128.01 Aligned_cols=89 Identities=21% Similarity=0.326 Sum_probs=82.1
Q ss_pred CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee---CCe
Q 015149 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL---GNR 202 (412)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~---~g~ 202 (412)
.......++|||+|||.++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|.+|++.|++..+ .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999987 899
Q ss_pred EEEEEEccCCCC
Q 015149 203 QIRCNWAAKGAT 214 (412)
Q Consensus 203 ~l~v~~~~~~~~ 214 (412)
.|.|.++..+..
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999977643
No 144
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=126.32 Aligned_cols=84 Identities=21% Similarity=0.432 Sum_probs=79.5
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCee-eEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeE----
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCS-DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ---- 203 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~-~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~---- 203 (412)
....++|||+|||+++++++|+++|+.||.|. +++++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45578999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEEccCC
Q 015149 204 IRCNWAAKG 212 (412)
Q Consensus 204 l~v~~~~~~ 212 (412)
|+|.|+.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998765
No 145
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=126.97 Aligned_cols=79 Identities=19% Similarity=0.218 Sum_probs=72.9
Q ss_pred CCcceEEE--ecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCee-----CCeeeEE
Q 015149 250 PQYTTVYV--GNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARIL-----CGKPIKC 322 (412)
Q Consensus 250 ~~~~~l~V--~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l-----~g~~l~V 322 (412)
.+.++||| +||+.++++++|+++|++| |.|.+|.+..+||||||+|.+.++|.+|++.|||.+| .|++|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~f--G~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHH--SCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhc--CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 45588999 6699999999999999999 9999999999999999999999999999999999998 7999999
Q ss_pred EecCCCCC
Q 015149 323 SWGSKPTP 330 (412)
Q Consensus 323 ~~a~~~~~ 330 (412)
.|++...-
T Consensus 101 ~~a~~~p~ 108 (114)
T 2cq2_A 101 NFVEKVQW 108 (114)
T ss_dssp EEESCCCC
T ss_pred EecccCcc
Confidence 99975543
No 146
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=1.6e-17 Score=124.74 Aligned_cols=76 Identities=21% Similarity=0.421 Sum_probs=72.2
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNV--GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 4799999999999999999999999 99999999876 799999999999999999999999999999999999
Q ss_pred CCCC
Q 015149 326 SKPT 329 (412)
Q Consensus 326 ~~~~ 329 (412)
+++.
T Consensus 80 ~~~~ 83 (96)
T 2x1f_A 80 SNSD 83 (96)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8765
No 147
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=3.1e-17 Score=124.94 Aligned_cols=86 Identities=23% Similarity=0.446 Sum_probs=79.5
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
......++|||+|||+++++++|+++|+.|| |.+++++.++.+++++|||||+|.+.++|.+|+ .+++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3445678999999999999999999999997 999999999999999999999999999999999 79999999999999
Q ss_pred EEccCCCC
Q 015149 207 NWAAKGAT 214 (412)
Q Consensus 207 ~~~~~~~~ 214 (412)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99976643
No 148
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=1.8e-17 Score=122.08 Aligned_cols=81 Identities=30% Similarity=0.482 Sum_probs=76.0
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
.....++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|.+|++ +++..++|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999997 68889999999998
Q ss_pred Ec
Q 015149 208 WA 209 (412)
Q Consensus 208 ~~ 209 (412)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 149
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=1.5e-17 Score=128.44 Aligned_cols=86 Identities=20% Similarity=0.395 Sum_probs=80.6
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
.....++|||+|||+++++++|+++|+.||.|.++.+..++.+|.++|||||+|.+.++|..|+..|+|..++|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCC
Q 015149 208 WAAKGA 213 (412)
Q Consensus 208 ~~~~~~ 213 (412)
|+.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 987653
No 150
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=126.01 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=73.9
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
.+.++|||+|||..+++++|+++|+.| |.|.+|.+.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKY--GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345899999999999999999999999 99999999875 6899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 015149 324 WGSKPTPP 331 (412)
Q Consensus 324 ~a~~~~~~ 331 (412)
|+++..+.
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99876543
No 151
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=132.92 Aligned_cols=89 Identities=28% Similarity=0.456 Sum_probs=82.6
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
.+....++|||+|||.++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 015149 207 NWAAKGATS 215 (412)
Q Consensus 207 ~~~~~~~~~ 215 (412)
.++..+...
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999876443
No 152
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.6e-17 Score=121.29 Aligned_cols=77 Identities=27% Similarity=0.406 Sum_probs=71.8
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
.+.++|||+|||.++++++|+++|+.| |.|.+|++.++ ||||+|.+.++|.+|++.|||..|+|+.|+|.|+++..
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERR--GRVIECDVVKD--YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHH--SCEEEEEECSS--CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcC--CCEEEEEEECC--EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 345899999999999999999999999 99999999855 99999999999999999999999999999999998765
Q ss_pred C
Q 015149 330 P 330 (412)
Q Consensus 330 ~ 330 (412)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 153
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.7e-17 Score=123.40 Aligned_cols=77 Identities=31% Similarity=0.336 Sum_probs=71.9
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEE
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V 322 (412)
..+.++|||+|||..+++++|+++|+.| |.|.+|.+.++ +|+|||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKY--GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTT--SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4456899999999999999999999999 99999999865 689999999999999999999999999999999
Q ss_pred EecCC
Q 015149 323 SWGSK 327 (412)
Q Consensus 323 ~~a~~ 327 (412)
.|+++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99874
No 154
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=122.14 Aligned_cols=81 Identities=26% Similarity=0.445 Sum_probs=74.5
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeccc
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~ 122 (412)
...+.++|||+|||+++++++|+++|++||+|.+|.+. ++||||+|.+.++|.+|++.|++..+.|+.|+|+++.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 34568999999999999999999999999999999987 57999999999999999999999999999999999987
Q ss_pred CCCCc
Q 015149 123 SSQRE 127 (412)
Q Consensus 123 ~~~~~ 127 (412)
+....
T Consensus 80 ~~~~~ 84 (90)
T 2dnq_A 80 KSKAS 84 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 155
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.1e-17 Score=121.53 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=72.0
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
.+.++|||+|||.++++++|+++|+.| |.|.+|.+.++ ||||+|.+.++|.+|++.|||..|.|+.|+|.|++++.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~v~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEY--GPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTT--SCCCEEEECSS--EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEECC--EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 445899999999999999999999999 99999999855 99999999999999999999999999999999998765
Q ss_pred C
Q 015149 330 P 330 (412)
Q Consensus 330 ~ 330 (412)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 4
No 156
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=125.05 Aligned_cols=79 Identities=29% Similarity=0.585 Sum_probs=73.6
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEE-Eeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV-RVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v-~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
+.++|||+|||..+++++|+++|+.| |.|.++ ++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAF--GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT--SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44899999999999999999999999 999999 99876 7999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 015149 324 WGSKPTPP 331 (412)
Q Consensus 324 ~a~~~~~~ 331 (412)
|++++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99877654
No 157
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=128.58 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=72.8
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
.++|||+|||.++++++|+++|++| |.|.+|.+.+++|+|||+|.+.++|.+|++.|||..|.|++|+|.|++...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRF--GSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 4799999999999999999999999 999999999999999999999999999999999999999999999997654
No 158
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=1.2e-17 Score=132.25 Aligned_cols=87 Identities=22% Similarity=0.307 Sum_probs=78.4
Q ss_pred CCCCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCc
Q 015149 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQ 113 (412)
Q Consensus 38 ~~~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~ 113 (412)
.....+..+.++|||+|||+++++++|+++|++||+|.+|++++++ .+|||||+|.+.++|.+|++.|++..|.|+
T Consensus 37 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 37 VGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CCCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3344566778899999999999999999999999999999998763 578999999999999999999999999999
Q ss_pred eeEEEecccCC
Q 015149 114 PIKVNWAYASS 124 (412)
Q Consensus 114 ~l~v~~~~~~~ 124 (412)
.|+|+|+.++.
T Consensus 117 ~l~V~~a~~~~ 127 (129)
T 2kxn_B 117 RIRVDFSITKR 127 (129)
T ss_dssp CCEESCCSSSS
T ss_pred EEEEEEecCCC
Confidence 99999997665
No 159
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=127.41 Aligned_cols=89 Identities=17% Similarity=0.315 Sum_probs=79.3
Q ss_pred CCCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhC------CC
Q 015149 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLN------GR 108 (412)
Q Consensus 39 ~~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~------~~ 108 (412)
+...+..+.++|||+|||+++++++|+++|+.||+|.+|.+++++ .+|||||+|.+.++|.+|++.++ +.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 7 GLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred CCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 344456778899999999999999999999999999999998764 47899999999999999999999 99
Q ss_pred ccCCceeEEEecccCCCCc
Q 015149 109 HIFGQPIKVNWAYASSQRE 127 (412)
Q Consensus 109 ~~~g~~l~v~~~~~~~~~~ 127 (412)
.|.|+.|+|.|+.++....
T Consensus 87 ~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 87 KLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp ESSSCEEEEECCCCCCCCC
T ss_pred EEcCEEEEEEECCCCccCC
Confidence 9999999999998765443
No 160
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=4.3e-18 Score=132.58 Aligned_cols=104 Identities=15% Similarity=0.243 Sum_probs=91.6
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
...+++|||+|||+++++++|+++|+.||.|.++.+..+ +.++|||||+|.+.++|..|+..|+|..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 445679999999999999999999999999999999865 45699999999999999999999999999999999999
Q ss_pred ccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEEEecCCCCCCHHHHHHHHhhcC
Q 015149 209 AAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALC 277 (412)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~ 277 (412)
+.+... -.+++...++++|.++|++||
T Consensus 82 a~~~~~------------------------------------------~~~~~~~~~~~~l~~~~~~~g 108 (115)
T 3lqv_A 82 YNANRA------------------------------------------FQKMDTKKKEEQLKLLKEKYG 108 (115)
T ss_dssp CCHHHH------------------------------------------TTTSCHHHHHHHHHHHHHHHC
T ss_pred ecCChh------------------------------------------hhhhhHhHhHHHHHHHHHHhC
Confidence 854311 046777889999999999993
No 161
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=1e-17 Score=132.73 Aligned_cols=87 Identities=33% Similarity=0.477 Sum_probs=81.5
Q ss_pred CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
.......++|||+|||+++++++|+++|+.||.|.+++++.|+.+++++|||||+|.+.++|.+|++.|++..|+|+.|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCC
Q 015149 206 CNWAAKG 212 (412)
Q Consensus 206 v~~~~~~ 212 (412)
|+|+.++
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 9998765
No 162
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3e-17 Score=127.93 Aligned_cols=89 Identities=34% Similarity=0.515 Sum_probs=81.4
Q ss_pred CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
.......++|||+|||+++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.+++ .|.|+.|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred EEEccCCCCC
Q 015149 206 CNWAAKGATS 215 (412)
Q Consensus 206 v~~~~~~~~~ 215 (412)
|+++......
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999765433
No 163
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=134.39 Aligned_cols=84 Identities=32% Similarity=0.526 Sum_probs=77.2
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC----CCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~----~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
+..+.++|||+|||.++++++|+++|+.||+|.+|++++++. +|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 456689999999999999999999999999999999998754 6899999999999999999999999999999999
Q ss_pred ecccCCCC
Q 015149 119 WAYASSQR 126 (412)
Q Consensus 119 ~~~~~~~~ 126 (412)
++.++..+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876654
No 164
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-17 Score=125.19 Aligned_cols=87 Identities=28% Similarity=0.482 Sum_probs=79.9
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCC-CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKT-GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~-~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
......++|||+|||+++++++|+++|+.|| |.+++++.++.+ ++++|||||+|.+.++|.+|+ .+++..|.|+.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3445678999999999999999999999999 999999999887 999999999999999999999 8999999999999
Q ss_pred EEEccCCCCC
Q 015149 206 CNWAAKGATS 215 (412)
Q Consensus 206 v~~~~~~~~~ 215 (412)
|+++.++...
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999776443
No 165
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=3.5e-17 Score=125.51 Aligned_cols=82 Identities=29% Similarity=0.474 Sum_probs=74.9
Q ss_pred CCCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCee
Q 015149 246 PENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKP 319 (412)
Q Consensus 246 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~ 319 (412)
+...++.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|+.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPF--GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTT--SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3344566899999999999999999999999 99999999866 689999999999999999999999999999
Q ss_pred eEEEecCCCC
Q 015149 320 IKCSWGSKPT 329 (412)
Q Consensus 320 l~V~~a~~~~ 329 (412)
|+|.|++++.
T Consensus 98 l~V~~a~~k~ 107 (108)
T 2jrs_A 98 MKVGHVTERT 107 (108)
T ss_dssp CEEECSCSSC
T ss_pred EEEEEcccCC
Confidence 9999998764
No 166
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=4e-17 Score=126.89 Aligned_cols=80 Identities=28% Similarity=0.450 Sum_probs=74.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
..++|||+|||.++++++|+++|+.| |.|.+|.+..+ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKH--GPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTS--SCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34899999999999999999999999 99999999987 499999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 015149 326 SKPTPPG 332 (412)
Q Consensus 326 ~~~~~~~ 332 (412)
+++....
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 8776443
No 167
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=126.98 Aligned_cols=80 Identities=30% Similarity=0.503 Sum_probs=73.8
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEE
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V 322 (412)
..+.++|||+|||..+++++|+++|+.| |.|.+|.+.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc--CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 3455899999999999999999999999 99999999866 699999999999999999999999999999999
Q ss_pred EecCCCCC
Q 015149 323 SWGSKPTP 330 (412)
Q Consensus 323 ~~a~~~~~ 330 (412)
.|++++.+
T Consensus 98 ~~a~~~~~ 105 (106)
T 1p27_B 98 DWCFVRGP 105 (106)
T ss_dssp EESEESSC
T ss_pred EeecCCCC
Confidence 99987653
No 168
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=123.75 Aligned_cols=77 Identities=34% Similarity=0.472 Sum_probs=72.3
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
..+.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|+|||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQA--GPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 3456899999999999999999999999 99999999876 7899999999999999999999999999999999
Q ss_pred ecCC
Q 015149 324 WGSK 327 (412)
Q Consensus 324 ~a~~ 327 (412)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 169
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.8e-17 Score=137.63 Aligned_cols=137 Identities=21% Similarity=0.358 Sum_probs=74.6
Q ss_pred EEecCHHHHHHHHHHhCCceeC--CeEEEEEEccCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCCcceEE
Q 015149 179 VSFRNQEDAQSAINDLNGKWLG--NRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISDGQEKSNEDAPENNPQYTTVY 256 (412)
Q Consensus 179 V~f~~~~~A~~ai~~l~~~~~~--g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 256 (412)
.+|.+.++|..++..+++.... |+.+...+........ ..... ..........+....+.++||
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~----------~~~~~----~s~~~~~~~~~~~~~~~~~l~ 76 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHS----------YERVR----NEDDDELEPGPQRSVEGWILF 76 (165)
T ss_dssp ---------------------------------------------------------------------CCCCC-CEEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccC----------ccccc----cCCCCCCCCCCCCCCCCCEEE
Confidence 7899999999999988876553 5555544422111000 00000 000000112233344568999
Q ss_pred EecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCC
Q 015149 257 VGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 330 (412)
Q Consensus 257 V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~ 330 (412)
|+|||..+++++|+++|+.| |.|..|.+..+ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+++..+
T Consensus 77 V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 77 VTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp EESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred EeCCCCCCCHHHHHHHhhcC--CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 99999999999999999999 99999999876 69999999999999999999999999999999999987654
Q ss_pred C
Q 015149 331 P 331 (412)
Q Consensus 331 ~ 331 (412)
.
T Consensus 155 ~ 155 (165)
T 1rk8_A 155 K 155 (165)
T ss_dssp -
T ss_pred C
Confidence 3
No 170
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=124.50 Aligned_cols=79 Identities=25% Similarity=0.349 Sum_probs=70.3
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCccc-EEEEEeeccccEEEEEeCCHHHHHHHHHHcCC-CeeCCeeeEEEecCC
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGT-IEDVRVQRDKGFGFVRYSTHPEAALAIQMGNA-RILCGKPIKCSWGSK 327 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~-v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g-~~l~g~~l~V~~a~~ 327 (412)
.+.++|||+|||.++++++|+++|+.| |. |..+.+ ..+|||||+|.+.++|.+|++.||| ..|+|+.|+|.|+++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDR--KLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHT--TCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc--CCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 345899999999999999999999999 88 554444 6799999999999999999999999 999999999999987
Q ss_pred CCCC
Q 015149 328 PTPP 331 (412)
Q Consensus 328 ~~~~ 331 (412)
+...
T Consensus 83 ~~~~ 86 (93)
T 2cqh_A 83 KKLR 86 (93)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6543
No 171
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=1.5e-18 Score=137.10 Aligned_cols=81 Identities=19% Similarity=0.368 Sum_probs=77.1
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
..++|||+|||.++++++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|.+|+ .+++..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4578999999999999999999999999999999999999999999999999999999999 699999999999999987
Q ss_pred CC
Q 015149 211 KG 212 (412)
Q Consensus 211 ~~ 212 (412)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 172
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=125.02 Aligned_cols=84 Identities=18% Similarity=0.302 Sum_probs=78.7
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
....++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|++.+++..|.|+.|.|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 015149 209 AAKG 212 (412)
Q Consensus 209 ~~~~ 212 (412)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8654
No 173
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=124.15 Aligned_cols=83 Identities=29% Similarity=0.468 Sum_probs=77.5
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
.....++|||+|||+++++++|+++|+.||+|.++++..++. ++++|||||+|.+.++|.+|++.|++..+.|+.|.|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 445678999999999999999999999999999999999975 8999999999999999999999999999999999999
Q ss_pred EccC
Q 015149 208 WAAK 211 (412)
Q Consensus 208 ~~~~ 211 (412)
++..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9853
No 174
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=3.4e-17 Score=120.96 Aligned_cols=76 Identities=24% Similarity=0.357 Sum_probs=71.0
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeec-------cccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR-------DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~-------~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
.++|||+|||.++++++|+++|+.| |.|.++.+.. .+|+|||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTY--GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3789999999999999999999999 9999999975 378999999999999999999999999999999999
Q ss_pred cCCCC
Q 015149 325 GSKPT 329 (412)
Q Consensus 325 a~~~~ 329 (412)
++++.
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 175
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=127.77 Aligned_cols=80 Identities=28% Similarity=0.424 Sum_probs=74.3
Q ss_pred CCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEE
Q 015149 247 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322 (412)
Q Consensus 247 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V 322 (412)
......++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGT--CCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhc--CCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344456899999999999999999999999 99999999877 799999999999999999999999999999999
Q ss_pred EecCCC
Q 015149 323 SWGSKP 328 (412)
Q Consensus 323 ~~a~~~ 328 (412)
.|++++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999765
No 176
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=2.1e-17 Score=129.30 Aligned_cols=80 Identities=20% Similarity=0.344 Sum_probs=73.3
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEE
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v 117 (412)
.+..+.++|||+|||+++++++|+++|++||+|.+|++++++ .+|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 455677999999999999999999999999999999998764 4789999999999999999999999999999999
Q ss_pred Eecc
Q 015149 118 NWAY 121 (412)
Q Consensus 118 ~~~~ 121 (412)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 177
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=126.45 Aligned_cols=87 Identities=34% Similarity=0.741 Sum_probs=80.3
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhc-CCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCce-eCCeEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSV-FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW-LGNRQIR 205 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~-~~g~~l~ 205 (412)
+....++|||+|||+++++++|+++|+. ||.|.+++++.++ ++.++|||||+|.+.++|.+|++.+++.. +.|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4456788999999999999999999999 9999999999998 99999999999999999999999999999 9999999
Q ss_pred EEEccCCCCC
Q 015149 206 CNWAAKGATS 215 (412)
Q Consensus 206 v~~~~~~~~~ 215 (412)
|.++.++...
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9998766433
No 178
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=125.50 Aligned_cols=80 Identities=24% Similarity=0.369 Sum_probs=74.2
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhh-cCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCe-eCCeeeEEE
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHA-LCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARI-LCGKPIKCS 323 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~-~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~-l~g~~l~V~ 323 (412)
+.++|||+|||.++++++|+++|+. | |.|.+|++.++ +|||||+|.+.++|.+|++.|||.. |+|+.|+|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~--G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVY--PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHC--TTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhC--CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 4489999999999999999999999 9 99999999876 7999999999999999999999999 999999999
Q ss_pred ecCCCCCCC
Q 015149 324 WGSKPTPPG 332 (412)
Q Consensus 324 ~a~~~~~~~ 332 (412)
|++++....
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998766543
No 179
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.1e-17 Score=125.04 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=72.6
Q ss_pred CCCCCCEEEEcCCCcc-CCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhC--CCccCCceeEEEe
Q 015149 43 DASTCRSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN--GRHIFGQPIKVNW 119 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~-~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~--~~~~~g~~l~v~~ 119 (412)
...++++|||+|||++ +++++|+++|++||+|.+|++++ .+|||||+|.+.++|.+|++.|+ +..|.|++|+|.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4567899999999998 99999999999999999999975 57899999999999999999886 4569999999999
Q ss_pred cccCCC
Q 015149 120 AYASSQ 125 (412)
Q Consensus 120 ~~~~~~ 125 (412)
+..+..
T Consensus 99 a~~~~~ 104 (112)
T 1x4f_A 99 SEKYKK 104 (112)
T ss_dssp ECSCSS
T ss_pred Cccccc
Confidence 976554
No 180
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=126.65 Aligned_cols=88 Identities=27% Similarity=0.381 Sum_probs=81.3
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
......++|||+|||+++++++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3456678999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred EEccCCCCC
Q 015149 207 NWAAKGATS 215 (412)
Q Consensus 207 ~~~~~~~~~ 215 (412)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 998766443
No 181
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=135.79 Aligned_cols=82 Identities=20% Similarity=0.290 Sum_probs=77.1
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCC--CeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFP--TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G--~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
..++|||+|||+++++++|+++|+.|| .|.+++++.|+.+|+++|||||+|.+.++|.+||+.|+|..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 015149 209 AAKG 212 (412)
Q Consensus 209 ~~~~ 212 (412)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8643
No 182
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-17 Score=126.32 Aligned_cols=88 Identities=20% Similarity=0.259 Sum_probs=78.4
Q ss_pred CCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcc--------eEEEeecC----CCCEEEEEecCHHHHHHHHHHhCC
Q 015149 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLE--------GCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNG 107 (412)
Q Consensus 40 ~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~--------~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~ 107 (412)
...+..+.++|||+|||+++++++|+++|++||.|. .|++..++ .+|||||+|.+.++|.+|++.||+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 344567789999999999999999999999999999 68988874 378999999999999999999999
Q ss_pred CccCCceeEEEecccCCCCc
Q 015149 108 RHIFGQPIKVNWAYASSQRE 127 (412)
Q Consensus 108 ~~~~g~~l~v~~~~~~~~~~ 127 (412)
..|.|+.|+|.++.++....
T Consensus 88 ~~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp CEETTEECEEECSSCCCCST
T ss_pred CccCCCEEEEEECCCCCCCC
Confidence 99999999999998776543
No 183
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=3.2e-18 Score=126.92 Aligned_cols=76 Identities=25% Similarity=0.370 Sum_probs=65.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcc--cEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVG--TIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G--~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
.+|||+|||.++++++|+++|+.| | .|.+++++++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~--G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL--GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT--TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh--CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEE
Confidence 579999999999999999999999 8 9999999876 68999999999999999999999999999999999
Q ss_pred cCCCCC
Q 015149 325 GSKPTP 330 (412)
Q Consensus 325 a~~~~~ 330 (412)
+.++.+
T Consensus 80 ~~~~~~ 85 (90)
T 3p5t_L 80 SNKLEH 85 (90)
T ss_dssp C-----
T ss_pred CCCCcc
Confidence 876644
No 184
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=3.5e-17 Score=126.29 Aligned_cols=80 Identities=24% Similarity=0.454 Sum_probs=74.1
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEE
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V 322 (412)
..+.++|||+|||..+++++|+++|+.| |.|.+|.+..+ +|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3455899999999999999999999999 99999999876 699999999999999999999999999999999
Q ss_pred EecCCCCC
Q 015149 323 SWGSKPTP 330 (412)
Q Consensus 323 ~~a~~~~~ 330 (412)
.|++++.+
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99987654
No 185
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=125.94 Aligned_cols=82 Identities=11% Similarity=0.121 Sum_probs=76.5
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
.....++|||+|||+++++++|+++|+.||+|.+++++.|+. |.++|||||+|.+.++|..|+. +++..+.|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 445568999999999999999999999999999999999977 9999999999999999999999 89999999999999
Q ss_pred EccC
Q 015149 208 WAAK 211 (412)
Q Consensus 208 ~~~~ 211 (412)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8754
No 186
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=4e-17 Score=125.33 Aligned_cols=83 Identities=29% Similarity=0.379 Sum_probs=78.4
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
......++|||+|||+.+++++|+++|+.||.|.++.++.++ +++++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 445667899999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred EEcc
Q 015149 207 NWAA 210 (412)
Q Consensus 207 ~~~~ 210 (412)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 187
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=2.7e-17 Score=126.38 Aligned_cols=86 Identities=30% Similarity=0.388 Sum_probs=75.9
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
......++|||+|||+++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|+..+ +..++|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 44556789999999999999999999999999999999999999999999999999999999999965 59999999999
Q ss_pred EEccCCC
Q 015149 207 NWAAKGA 213 (412)
Q Consensus 207 ~~~~~~~ 213 (412)
.++.++.
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9997654
No 188
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=121.65 Aligned_cols=82 Identities=20% Similarity=0.386 Sum_probs=76.7
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCC-cccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR-SRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~-~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
..++|||+|||+++++++|+++|+.||.|.++.+..++.++. ++|||||+|.+.++|.+|++.|+|..++|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 356899999999999999999999999999999999987766 8999999999999999999999999999999999998
Q ss_pred cCC
Q 015149 210 AKG 212 (412)
Q Consensus 210 ~~~ 212 (412)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 189
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=5e-17 Score=122.11 Aligned_cols=77 Identities=23% Similarity=0.434 Sum_probs=71.3
Q ss_pred CCCCcceEEEecCCC-CCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 248 NNPQYTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 248 ~~~~~~~l~V~nL~~-~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
..++.++|||+|||. ++++++|+++|+.| |.|.++++. +|||||+|.+.++|.+|++.|||..|+|+.|+|.|++
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~--G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGG--SCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 344568999999998 99999999999999 999999995 8899999999999999999999999999999999987
Q ss_pred CC
Q 015149 327 KP 328 (412)
Q Consensus 327 ~~ 328 (412)
+.
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 190
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.3e-17 Score=125.04 Aligned_cols=89 Identities=20% Similarity=0.365 Sum_probs=78.1
Q ss_pred CCCCCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC-----CCCEEEEEecCHHHHHHHHHHhCCCccC
Q 015149 37 NLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-----KSSYGFVDYFDRRSAALAIVTLNGRHIF 111 (412)
Q Consensus 37 ~~~~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~-----~~g~afV~f~~~~~A~~Al~~l~~~~~~ 111 (412)
...+.....+.++|||+|||+++++++|+++|+.|| |.+|.++.++ .+|||||+|.+.++|.+|+ .|++..|.
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 5 SSGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp CCCCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred CCCCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 334444556779999999999999999999999999 9999998764 3689999999999999999 99999999
Q ss_pred CceeEEEecccCCCCc
Q 015149 112 GQPIKVNWAYASSQRE 127 (412)
Q Consensus 112 g~~l~v~~~~~~~~~~ 127 (412)
|+.|+|.++.++....
T Consensus 83 g~~l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 83 NKRIRVDVADQAQDKD 98 (104)
T ss_dssp TEECEEEECCCCCCCC
T ss_pred CcEEEEEEccCCCCCC
Confidence 9999999998776543
No 191
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.1e-17 Score=122.65 Aligned_cols=88 Identities=25% Similarity=0.366 Sum_probs=80.3
Q ss_pred CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
.......++|||+|||+++++++|+++|+.||.|..++++.++.++.++|||||+|.+.++|.+|+. ++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 4455667899999999999999999999999999999999999999999999999999999999999 57899999999
Q ss_pred EEEccCCCCC
Q 015149 206 CNWAAKGATS 215 (412)
Q Consensus 206 v~~~~~~~~~ 215 (412)
|.++..+...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999776443
No 192
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=3.1e-17 Score=121.44 Aligned_cols=80 Identities=20% Similarity=0.408 Sum_probs=76.4
Q ss_pred CceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 015149 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (412)
Q Consensus 132 ~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 211 (412)
.++|||+|||+++++++|+++|+.||.|.++++..++.+++++|||||+|.+.++|.+|+ .+++..+.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 468999999999999999999999999999999999889999999999999999999999 8999999999999999865
Q ss_pred C
Q 015149 212 G 212 (412)
Q Consensus 212 ~ 212 (412)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 193
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1.4e-17 Score=127.51 Aligned_cols=79 Identities=13% Similarity=0.092 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCccCCHHHHHHHhhccC-CcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCC
Q 015149 46 TCRSVYVGNIHPQVTNALLQEVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~~L~~~f~~~G-~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~ 124 (412)
..++|||+|||+++++++|+++|++|| +|..+.+..++++|||||+|.+.++|.+|++.||+..+.|+.|+|+++....
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 467899999999999999999999999 8999988766789999999999999999999999999999999999986543
No 194
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=4.3e-18 Score=162.56 Aligned_cols=149 Identities=17% Similarity=0.380 Sum_probs=107.4
Q ss_pred HHHHhhccCCcceEEEeec------CCCCEE-----EEEecCHHHHHHHHHHhCCCccCCc---------------eeEE
Q 015149 64 LQEVFSSTGPLEGCKLIKK------DKSSYG-----FVDYFDRRSAALAIVTLNGRHIFGQ---------------PIKV 117 (412)
Q Consensus 64 L~~~f~~~G~i~~v~~~~~------~~~g~a-----fV~f~~~~~A~~Al~~l~~~~~~g~---------------~l~v 117 (412)
|..+|..+|+|..|..+.. ...+++ |+.|.+..++..++..++......+ .+.+
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6778999988887633321 123333 6777665544433322221111110 1111
Q ss_pred EecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc
Q 015149 118 NWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197 (412)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~ 197 (412)
|.............++|||+|||+.+++++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|+|.
T Consensus 89 -~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 89 -WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred -cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 1111112223445679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeEEEEEEccCCC
Q 015149 198 WLGNRQIRCNWAAKGA 213 (412)
Q Consensus 198 ~~~g~~l~v~~~~~~~ 213 (412)
.|.|+.|.|.|+....
T Consensus 168 ~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 168 KIDGRRVLVDVERGRT 183 (437)
T ss_pred EECCEEEEEEEeCCCC
Confidence 9999999999997654
No 195
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.4e-17 Score=124.24 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCC-----ceeEEE
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG-----QPIKVN 118 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g-----~~l~v~ 118 (412)
....++|||+|||+++++++|+++|++||+|..|.++.+ |||||+|.+.++|.+||+.||+..|.| +.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 355788999999999999999999999999999999887 899999999999999999999999999 999999
Q ss_pred ecccCCCC
Q 015149 119 WAYASSQR 126 (412)
Q Consensus 119 ~~~~~~~~ 126 (412)
++.++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99876543
No 196
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.2e-17 Score=122.25 Aligned_cols=79 Identities=20% Similarity=0.385 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccC--CceeEEEecc
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIF--GQPIKVNWAY 121 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~--g~~l~v~~~~ 121 (412)
..++++|||+|||+++++++|+++|++||+|.+|.+..+ ++||||+|.+.++|.+|++.||+..+. |+.|+|.|+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 455688999999999999999999999999999988765 789999999999999999999999999 9999999998
Q ss_pred cCC
Q 015149 122 ASS 124 (412)
Q Consensus 122 ~~~ 124 (412)
++.
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 197
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=3e-17 Score=125.83 Aligned_cols=79 Identities=22% Similarity=0.473 Sum_probs=72.8
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCC
Q 015149 248 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327 (412)
Q Consensus 248 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~ 327 (412)
...+.++|||+|||.++++++|+++|+.| |.|.+|.+. +|||||+|.+.++|.+|++.|||..|+|+.|+|.|+++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPF--GPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTT--SCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 44556899999999999999999999999 999999998 89999999999999999999999999999999999987
Q ss_pred CCC
Q 015149 328 PTP 330 (412)
Q Consensus 328 ~~~ 330 (412)
+..
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 653
No 198
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-16 Score=124.13 Aligned_cols=85 Identities=28% Similarity=0.364 Sum_probs=78.7
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
.....++|||+|||+++++++|+++|+.||.|.+++++.++ +++++|||||+|.+.++|.+|++.|++..|.|+.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 44557899999999999999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred EccCCC
Q 015149 208 WAAKGA 213 (412)
Q Consensus 208 ~~~~~~ 213 (412)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 986543
No 199
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=5.3e-17 Score=122.70 Aligned_cols=79 Identities=25% Similarity=0.364 Sum_probs=72.4
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcce--------EEEeecCC----CCEEEEEecCHHHHHHHHHHhCCCcc
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEG--------CKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHI 110 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~--------v~~~~~~~----~g~afV~f~~~~~A~~Al~~l~~~~~ 110 (412)
...+.++|||+|||+++++++|+++|++||.|.+ |++..++. +|||||+|.+.++|.+|++.||+..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3455788999999999999999999999999999 99988753 67999999999999999999999999
Q ss_pred CCceeEEEecc
Q 015149 111 FGQPIKVNWAY 121 (412)
Q Consensus 111 ~g~~l~v~~~~ 121 (412)
.|+.|+|++++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 200
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=130.70 Aligned_cols=81 Identities=26% Similarity=0.378 Sum_probs=73.4
Q ss_pred CCCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEE--EEeecc------ccEEEEEeCCHHHHHHHHHHcCCC----e
Q 015149 247 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED--VRVQRD------KGFGFVRYSTHPEAALAIQMGNAR----I 314 (412)
Q Consensus 247 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~--v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~----~ 314 (412)
....+.++|||+|||+++|+++|+++|++| |.|.. |+|++| ||||||+|.+. +|.+|++.|||. .
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~--G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPY--AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGG--CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 344556899999999999999999999999 99977 999876 69999999999 999999999999 9
Q ss_pred eCCeeeEEEecCCCCC
Q 015149 315 LCGKPIKCSWGSKPTP 330 (412)
Q Consensus 315 l~g~~l~V~~a~~~~~ 330 (412)
|+|+.|+|.|+++...
T Consensus 95 ~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKR 110 (131)
T ss_dssp GGGCCCCCEECCCSCC
T ss_pred CCCEEEEEEECCCCCC
Confidence 9999999999987654
No 201
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=6.5e-17 Score=123.88 Aligned_cols=80 Identities=20% Similarity=0.376 Sum_probs=73.7
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCee---CCee
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARIL---CGKP 319 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l---~g~~ 319 (412)
..+.++|||+|||..+++++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|++.|||..+ .|+.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEF--GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHH--SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3455899999999999999999999999 99999999875 68999999999999999999999987 8999
Q ss_pred eEEEecCCCCC
Q 015149 320 IKCSWGSKPTP 330 (412)
Q Consensus 320 l~V~~a~~~~~ 330 (412)
|+|.|+++...
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987654
No 202
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=9.6e-17 Score=122.22 Aligned_cols=78 Identities=26% Similarity=0.397 Sum_probs=71.8
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
.+.++|||+|||.++++++|+++|+.| | |.+|+++++ +|||||+|.+.++|.+|+ .|||..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDL--S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTS--C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC--C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445899999999999999999999999 8 999999876 689999999999999999 899999999999999
Q ss_pred ecCCCCCC
Q 015149 324 WGSKPTPP 331 (412)
Q Consensus 324 ~a~~~~~~ 331 (412)
|+++....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99876543
No 203
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-16 Score=119.43 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=72.1
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
.+.++|||+|| ++++++|+++|+.| |.|.+|.+.+.+|||||+|.+.++|.+|++.|||..|+|+.|+|.|++++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~--G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTT--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhC--CCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 34589999996 89999999999999 999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 015149 330 P 330 (412)
Q Consensus 330 ~ 330 (412)
.
T Consensus 89 ~ 89 (97)
T 1x5p_A 89 M 89 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 204
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=4.8e-17 Score=121.20 Aligned_cols=84 Identities=27% Similarity=0.356 Sum_probs=77.5
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
....++|||+|||+++++++|+++|+.||.|.++++..+ ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456689999999999999999999999999999999874 788999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015149 209 AAKGAT 214 (412)
Q Consensus 209 ~~~~~~ 214 (412)
+.+...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 976543
No 205
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=4.8e-17 Score=122.17 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=71.0
Q ss_pred CCCCCCCEEEEcCCCc-cCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 42 FDASTCRSVYVGNIHP-QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~-~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
....++++|||+|||+ ++++++|+++|++||.|.+|.+ .+|||||+|.+.++|.+|+..|++..+.|+.|+|+++
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 3445688999999998 9999999999999999999988 3789999999999999999999999999999999998
Q ss_pred ccC
Q 015149 121 YAS 123 (412)
Q Consensus 121 ~~~ 123 (412)
+.+
T Consensus 93 ~~~ 95 (97)
T 2xnq_A 93 SSN 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 206
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=127.98 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=71.6
Q ss_pred CCCcceEEEecCCCCCCHHHHH----HHHhhcCcccEEEEEeec---cccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeE
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLH----RHFHALCVGTIEDVRVQR---DKGFGFVRYSTHPEAALAIQMGNARILCGKPIK 321 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~----~~F~~~~~G~v~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~ 321 (412)
.++.++|||+|||+.+++++|+ ++|++| |.|.+|.+.+ .||||||+|.+.++|.+|++.|||..|.|++|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~--G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQ--GDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccC--CCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3456899999999999999876 699999 9999999875 389999999999999999999999999999999
Q ss_pred EEecCCCC
Q 015149 322 CSWGSKPT 329 (412)
Q Consensus 322 V~~a~~~~ 329 (412)
|.|++.+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998654
No 207
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=124.54 Aligned_cols=77 Identities=26% Similarity=0.524 Sum_probs=73.1
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCCC
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPP 331 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~~ 331 (412)
++|||+|||.++++++|+++|++| |.|.+|.+.++ +|+|||+|.+.++|.+|++.|||..|+|+.|+|.|+++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY--GPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH--CCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 479999999999999999999999 99999999997 999999999999999999999999999999999999887644
No 208
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=7.8e-18 Score=127.85 Aligned_cols=76 Identities=25% Similarity=0.390 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeccc
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~ 122 (412)
...++|||+|||.++++++|+++|++||.|.+|++. +++|||||+|.+.++|.+|+..||+..+.|+.|+|.|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 456899999999999999999999999999999987 4678999999999999999999999999999999999865
No 209
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=119.77 Aligned_cols=78 Identities=21% Similarity=0.416 Sum_probs=71.4
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHh-CCCccCCceeEEEec
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL-NGRHIFGQPIKVNWA 120 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l-~~~~~~g~~l~v~~~ 120 (412)
....+.++|||+|||.++++++|+++|++||+|.+|.+.++ +|||||+|.+.++|.+|++.| ++..+.|++|+|+|+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 34466788999999999999999999999999999999874 689999999999999999988 999999999999987
Q ss_pred c
Q 015149 121 Y 121 (412)
Q Consensus 121 ~ 121 (412)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 210
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.3e-17 Score=121.81 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=75.7
Q ss_pred CCCCceEEECCCCccccHHHHH----HHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLF----ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~----~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 204 (412)
..+..+|||+|||+++++++|+ ++|++||.|.+++++.|+.+ +|||||+|.+.++|.+|++.+++..+.|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4456789999999999999999 99999999999999988755 8999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 015149 205 RCNWAAKGA 213 (412)
Q Consensus 205 ~v~~~~~~~ 213 (412)
+|+++.+..
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999996653
No 211
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=123.54 Aligned_cols=79 Identities=20% Similarity=0.402 Sum_probs=73.1
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEE-EEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCee---
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIE-DVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKP--- 319 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~-~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~--- 319 (412)
.+.++|||+|||.++++++|+++|+.| |.|. +|++.++ +|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATM--GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHT--TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHh--CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345899999999999999999999999 9999 9999876 489999999999999999999999999999
Q ss_pred -eEEEecCCCCC
Q 015149 320 -IKCSWGSKPTP 330 (412)
Q Consensus 320 -l~V~~a~~~~~ 330 (412)
|+|.|+++..+
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999987654
No 212
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=3.8e-17 Score=125.27 Aligned_cols=79 Identities=24% Similarity=0.484 Sum_probs=72.6
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeccc
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~ 122 (412)
...+.++|||+|||+++++++|+++|++||+|.+|.+. +|||||+|.+.++|.+|+..|++..+.|+.|+|.|+.+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 45667899999999999999999999999999999997 78999999999999999999999999999999999976
Q ss_pred CCC
Q 015149 123 SSQ 125 (412)
Q Consensus 123 ~~~ 125 (412)
+..
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 653
No 213
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=119.13 Aligned_cols=83 Identities=20% Similarity=0.371 Sum_probs=77.4
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
.....++|||+|||+++++++|+++|+.| .|.+++++.+ .+|+++|||||+|.+.++|.+|+. +++..++|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34566899999999999999999999999 9999999999 789999999999999999999999 99999999999999
Q ss_pred EccCCC
Q 015149 208 WAAKGA 213 (412)
Q Consensus 208 ~~~~~~ 213 (412)
++..+.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 997653
No 214
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=8.2e-17 Score=119.87 Aligned_cols=82 Identities=27% Similarity=0.434 Sum_probs=74.2
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~ 121 (412)
....+.++|||+|||+++++++|+++|++||+|.+|.+.+ +||||+|.+.++|.+|+..||+..+.|+.|+|+++.
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 3456678999999999999999999999999999999864 499999999999999999999999999999999998
Q ss_pred cCCCCc
Q 015149 122 ASSQRE 127 (412)
Q Consensus 122 ~~~~~~ 127 (412)
++....
T Consensus 81 ~~~~~~ 86 (92)
T 2dgt_A 81 SRLRTA 86 (92)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 765433
No 215
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=2e-17 Score=124.14 Aligned_cols=81 Identities=19% Similarity=0.325 Sum_probs=76.0
Q ss_pred CCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
...++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 015149 210 A 210 (412)
Q Consensus 210 ~ 210 (412)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 216
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.4e-17 Score=125.83 Aligned_cols=83 Identities=34% Similarity=0.585 Sum_probs=78.8
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
..++|||+|||+++++++|+++|+.||.|.++.+..++.+|.++|||||+|.+.++|.+|++.+++..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45789999999999999999999999999999999999899999999999999999999999999999999999999997
Q ss_pred CCC
Q 015149 211 KGA 213 (412)
Q Consensus 211 ~~~ 213 (412)
+..
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 653
No 217
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=1.1e-17 Score=119.48 Aligned_cols=75 Identities=32% Similarity=0.577 Sum_probs=72.1
Q ss_pred eEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 134 ~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
+|||+|||+++++++|+++|+.||+|.++.+..++.+++++|||||+|.+.++|++|++ +++..++|+.|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999998 9999999999999875
No 218
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=132.17 Aligned_cols=86 Identities=19% Similarity=0.374 Sum_probs=79.6
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeee--EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc----eeC
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD--ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK----WLG 200 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~--~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~----~~~ 200 (412)
......++|||+|||+++++++|+++|++||.|.. |++++|+.+|++||||||+|.+. +|.+|+..|++. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34456789999999999999999999999999966 99999999999999999999999 999999999999 999
Q ss_pred CeEEEEEEccCCC
Q 015149 201 NRQIRCNWAAKGA 213 (412)
Q Consensus 201 g~~l~v~~~~~~~ 213 (412)
|+.|.|+++.+..
T Consensus 97 gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 GKTINVEFAKGSK 109 (131)
T ss_dssp GCCCCCEECCCSC
T ss_pred CEEEEEEECCCCC
Confidence 9999999997653
No 219
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.7e-18 Score=123.84 Aligned_cols=81 Identities=22% Similarity=0.423 Sum_probs=75.9
Q ss_pred CCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
.+.++|||+|||+++++++|+++|+.||.|.++++..++.++.++|||||+|.+.++|..|++.|++..+.|+.+++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred c
Q 015149 210 A 210 (412)
Q Consensus 210 ~ 210 (412)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 220
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.5e-17 Score=124.49 Aligned_cols=83 Identities=30% Similarity=0.527 Sum_probs=75.9
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeccc
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~ 122 (412)
.....++|||+|||.++++++|+++|++||+|.+|.+.++ +|||||+|.+.++|.+|+..|++..|.|+.|+|.|+.+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 3456789999999999999999999999999999999876 78999999999999999999999999999999999987
Q ss_pred CCCCc
Q 015149 123 SSQRE 127 (412)
Q Consensus 123 ~~~~~ 127 (412)
+....
T Consensus 99 ~~~~~ 103 (109)
T 1x4g_A 99 SPDMT 103 (109)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76543
No 221
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=6.9e-17 Score=119.54 Aligned_cols=75 Identities=25% Similarity=0.494 Sum_probs=70.6
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
.++|||+|||.++++++|+++|+.| |.|.++++.++ +|+|||+|.+.++|.+|+ .|||..|.|+.|+|.++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC--GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG--CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 3799999999999999999999999 99999999876 789999999999999999 99999999999999999
Q ss_pred CCCC
Q 015149 326 SKPT 329 (412)
Q Consensus 326 ~~~~ 329 (412)
++..
T Consensus 83 ~~~~ 86 (89)
T 3ucg_A 83 RTNR 86 (89)
T ss_dssp TTTS
T ss_pred cCCC
Confidence 7654
No 222
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.2e-17 Score=124.24 Aligned_cols=78 Identities=26% Similarity=0.359 Sum_probs=72.5
Q ss_pred CcceEEEecCCCCCCHHHHH---HHHhhcCcccEEEEEeeccc---------cEEEEEeCCHHHHHHHHHHcCCCeeCCe
Q 015149 251 QYTTVYVGNLSSEVTSVDLH---RHFHALCVGTIEDVRVQRDK---------GFGFVRYSTHPEAALAIQMGNARILCGK 318 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~---~~F~~~~~G~v~~v~i~~~k---------g~afV~f~~~~~A~~A~~~l~g~~l~g~ 318 (412)
..++|||+|||.++++++|+ ++|++| |.|.+|.+.+++ |||||+|.+.++|.+|++.|||..|+|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~--G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKF--GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTT--SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhcc--CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 34799999999999999999 999999 999999998763 7999999999999999999999999999
Q ss_pred eeEEEecCCCCC
Q 015149 319 PIKCSWGSKPTP 330 (412)
Q Consensus 319 ~l~V~~a~~~~~ 330 (412)
.|+|.|++++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999987753
No 223
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.1e-17 Score=121.84 Aligned_cols=78 Identities=23% Similarity=0.403 Sum_probs=69.8
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEee--ccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ--RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~--~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
....++|||+|||.++++++|+++|+.| |.|. ++++ +.+|||||+|.+.++|.+|++.|||..|+|+.|+|.|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~--G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALREL--GSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHT--TCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhc--CCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3445899999999999999999999999 8885 5555 448999999999999999999999999999999999998
Q ss_pred CCC
Q 015149 327 KPT 329 (412)
Q Consensus 327 ~~~ 329 (412)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 224
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=7.8e-17 Score=130.54 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCC--ceeEEEecc
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAY 121 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g--~~l~v~~~~ 121 (412)
++...+|||+||++++|+++|+++|++||+|.+|++..+++++||||+|.+.++|.+|++.|||..|.| ++|+|+|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 344567999999999999999999999999999999877678899999999999999999999999966 999999998
Q ss_pred cCCC
Q 015149 122 ASSQ 125 (412)
Q Consensus 122 ~~~~ 125 (412)
++..
T Consensus 123 ~~~l 126 (164)
T 1sjr_A 123 LTSL 126 (164)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 7653
No 225
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.6e-17 Score=119.50 Aligned_cols=80 Identities=26% Similarity=0.519 Sum_probs=73.1
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeccc
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~ 122 (412)
...+.++|||+|||+++++++|+++|++||+|.+|.+.+ +||||+|.+.++|.+|++.|++..+.|+.|+|.++.+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 445678899999999999999999999999999999964 4999999999999999999999999999999999987
Q ss_pred CCCC
Q 015149 123 SSQR 126 (412)
Q Consensus 123 ~~~~ 126 (412)
...+
T Consensus 81 ~~~~ 84 (90)
T 2dnp_A 81 GQKK 84 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 226
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=5.6e-17 Score=128.44 Aligned_cols=89 Identities=21% Similarity=0.427 Sum_probs=82.2
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
......++|||+|||+++++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|..|++.|++..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 015149 207 NWAAKGATS 215 (412)
Q Consensus 207 ~~~~~~~~~ 215 (412)
.|+..+...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999766443
No 227
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=2.6e-16 Score=124.12 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=74.3
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEE
Q 015149 248 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322 (412)
Q Consensus 248 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V 322 (412)
.....++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTT--SCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456899999999999999999999999 99999999875 699999999999999999999999999999999
Q ss_pred EecCCCCC
Q 015149 323 SWGSKPTP 330 (412)
Q Consensus 323 ~~a~~~~~ 330 (412)
.|+.+...
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99976543
No 228
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=125.89 Aligned_cols=84 Identities=30% Similarity=0.508 Sum_probs=74.6
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecC-CCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQ-KTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~-~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
......++|||+|||+++++++|+++|+.|| |.++++..++ .+|+++|||||+|.+.++|.+|+ .+++..++|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3445678999999999999999999999999 9999999998 68999999999999999999999 7999999999999
Q ss_pred EEEccCC
Q 015149 206 CNWAAKG 212 (412)
Q Consensus 206 v~~~~~~ 212 (412)
|+++.++
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998764
No 229
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=8.1e-17 Score=121.25 Aligned_cols=78 Identities=23% Similarity=0.405 Sum_probs=72.6
Q ss_pred CCcceEEEecCCCCCCHHHHH----HHHhhcCcccEEEEEeec---cccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLH----RHFHALCVGTIEDVRVQR---DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~----~~F~~~~~G~v~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V 322 (412)
++.++|||+|||.++++++|+ ++|+.| |.|.+|.+.+ .+|+|||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~--G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRF--GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG--SCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC--CCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 355899999999999999999 999999 9999999984 4899999999999999999999999999999999
Q ss_pred EecCCCC
Q 015149 323 SWGSKPT 329 (412)
Q Consensus 323 ~~a~~~~ 329 (412)
.|++++.
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998754
No 230
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=1.5e-16 Score=125.51 Aligned_cols=86 Identities=28% Similarity=0.357 Sum_probs=80.0
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
.....++|||+|||+++++++|+++|+.||.|.++++..++ +|+++|||||+|.+.++|.+|++.+++..+.|+.|.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 015149 208 WAAKGAT 214 (412)
Q Consensus 208 ~~~~~~~ 214 (412)
++.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9976543
No 231
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.3e-17 Score=124.66 Aligned_cols=87 Identities=22% Similarity=0.340 Sum_probs=79.4
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCC-eeeEEEe-ecCCCCCcccEEEEEecCHHHHHHHHHHhC--CceeCCeEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPT-CSDARVM-WDQKTGRSRGFGFVSFRNQEDAQSAINDLN--GKWLGNRQI 204 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-v~~~~~~-~d~~~~~~~g~afV~f~~~~~A~~ai~~l~--~~~~~g~~l 204 (412)
....++|||+|||+++++++|+++|+.||. |.++.++ .++.+|+++|||||+|.+.++|..|++.|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEEEccCCCCC
Q 015149 205 RCNWAAKGATS 215 (412)
Q Consensus 205 ~v~~~~~~~~~ 215 (412)
.|.|+.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876543
No 232
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-16 Score=122.43 Aligned_cols=79 Identities=22% Similarity=0.390 Sum_probs=72.2
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCccc-EEEEEee-------ccccEEEEEeCCHHHHHHHHHHcC--CCeeCCeee
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGT-IEDVRVQ-------RDKGFGFVRYSTHPEAALAIQMGN--ARILCGKPI 320 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~-v~~v~i~-------~~kg~afV~f~~~~~A~~A~~~l~--g~~l~g~~l 320 (412)
+.++|||+|||.++++++|+++|+.| |. |.+|.++ +.+|||||+|.+.++|.+|++.|| +..|+|+.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~--G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKV--TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH--STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHh--cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 44899999999999999999999999 88 9999998 348999999999999999999996 589999999
Q ss_pred EEEecCCCCCC
Q 015149 321 KCSWGSKPTPP 331 (412)
Q Consensus 321 ~V~~a~~~~~~ 331 (412)
+|.|+++...+
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999877654
No 233
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=9.7e-17 Score=123.14 Aligned_cols=77 Identities=23% Similarity=0.319 Sum_probs=71.9
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEE
Q 015149 248 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322 (412)
Q Consensus 248 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V 322 (412)
...+.++|||+|||..+++++|+++|+.| |.|.+|.+..+ +|+|||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 33456899999999999999999999999 99999999966 799999999999999999999999999999999
Q ss_pred EecC
Q 015149 323 SWGS 326 (412)
Q Consensus 323 ~~a~ 326 (412)
.|++
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 234
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.1e-17 Score=120.95 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=74.9
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceE-EEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGC-KLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v-~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~ 121 (412)
.....++|||+|||+++++++|+++|++||+|.+| .++.++..+.|||+|.+.++|.+|+..||+..+.|++|+|.++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34557889999999999999999999999999999 58888777789999999999999999999999999999999997
Q ss_pred cCC
Q 015149 122 ASS 124 (412)
Q Consensus 122 ~~~ 124 (412)
++.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 663
No 235
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=6.6e-17 Score=128.01 Aligned_cols=82 Identities=30% Similarity=0.523 Sum_probs=75.3
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeE
Q 015149 248 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 321 (412)
Q Consensus 248 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~ 321 (412)
.....++|||+|||..+++++|+++|+.| |.|.+|.++.+ +|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34455899999999999999999999999 99999999877 79999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q 015149 322 CSWGSKPTPP 331 (412)
Q Consensus 322 V~~a~~~~~~ 331 (412)
|.|+++...+
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999876554
No 236
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=1.2e-16 Score=131.51 Aligned_cols=87 Identities=26% Similarity=0.398 Sum_probs=81.5
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 015149 208 WAAKGAT 214 (412)
Q Consensus 208 ~~~~~~~ 214 (412)
|+.+...
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9976543
No 237
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.70 E-value=1.9e-16 Score=122.14 Aligned_cols=76 Identities=30% Similarity=0.594 Sum_probs=71.2
Q ss_pred CcceEEEecCCCC-CCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 251 QYTTVYVGNLSSE-VTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 251 ~~~~l~V~nL~~~-~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
..++|||+|||.. +++++|+++|++| |.|.+|.+ .+|||||+|.+.++|.+|++.|||..|+|+.|+|.|++++.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~--G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKY--GRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGG--SCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhC--CCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 4489999999999 9999999999999 99999999 68999999999999999999999999999999999998654
Q ss_pred C
Q 015149 330 P 330 (412)
Q Consensus 330 ~ 330 (412)
+
T Consensus 102 ~ 102 (110)
T 1wf1_A 102 P 102 (110)
T ss_dssp S
T ss_pred C
Confidence 4
No 238
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=7.9e-17 Score=126.55 Aligned_cols=82 Identities=21% Similarity=0.344 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCccCCHHHHH----HHhhccCCcceEEEeec-CCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQ----EVFSSTGPLEGCKLIKK-DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~----~~f~~~G~i~~v~~~~~-~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
..++++|||+|||+++++++|+ ++|++||+|.+|.+.+. +++|||||+|.+.++|..|+..|||..|.|++|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3457899999999999999876 79999999999988654 468999999999999999999999999999999999
Q ss_pred ecccCCC
Q 015149 119 WAYASSQ 125 (412)
Q Consensus 119 ~~~~~~~ 125 (412)
|+..+..
T Consensus 106 ~a~~~~~ 112 (127)
T 2a3j_A 106 FSETPQS 112 (127)
T ss_dssp ECCCCCH
T ss_pred EccCcch
Confidence 9986643
No 239
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=125.58 Aligned_cols=83 Identities=22% Similarity=0.377 Sum_probs=70.2
Q ss_pred CCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC-----CCCEEEEEecCHHHHHHHHHHhCCCccCCce
Q 015149 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (412)
Q Consensus 40 ~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~-----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~ 114 (412)
+.......++|||+|||+++++++|+++|++|| |.+|.+.+++ .+|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 12 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 12 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp --------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 334456679999999999999999999999999 9999998765 3789999999999999999 99999999999
Q ss_pred eEEEecccCC
Q 015149 115 IKVNWAYASS 124 (412)
Q Consensus 115 l~v~~~~~~~ 124 (412)
|+|+++.++.
T Consensus 90 l~V~~a~~~~ 99 (100)
T 2j76_E 90 IRVDVADQAQ 99 (100)
T ss_dssp CCCEECCCSC
T ss_pred EEEEeccCCC
Confidence 9999987653
No 240
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=2.8e-17 Score=124.29 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=70.0
Q ss_pred cceEEEecCCC------CCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCC-e
Q 015149 252 YTTVYVGNLSS------EVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCG-K 318 (412)
Q Consensus 252 ~~~l~V~nL~~------~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g-~ 318 (412)
.++|||+|||. ++++++|+++|++| |.|.+|+++++ +|||||+|.+.++|.+|++.|||..|.| +
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~--G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKA--GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTT--SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhc--CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 47999999999 99999999999999 99999999865 6999999999999999999999999999 9
Q ss_pred eeEEEecCC
Q 015149 319 PIKCSWGSK 327 (412)
Q Consensus 319 ~l~V~~a~~ 327 (412)
.|+|.++++
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999864
No 241
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2.9e-16 Score=122.06 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=69.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccE-EEEEeCCHHHHHHHHHHcCCCeeCC--eeeEEEecCCCC
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGF-GFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGSKPT 329 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~-afV~f~~~~~A~~A~~~l~g~~l~g--~~l~V~~a~~~~ 329 (412)
..|||+||++.+++++|+++|++| |.|.+|++...+|+ |||+|.+.++|.+|++.|||..|.| +.|+|.|++++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~y--G~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPV--GKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTT--SCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 456799999999999999999999 99999999776796 9999999999999999999999987 699999998775
No 242
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=120.87 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=73.5
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEE
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v 117 (412)
......++|||+|||+++++++|+++|++||.|..+.++.++ .+|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 345567889999999999999999999999999988777764 3689999999999999999999999999999999
Q ss_pred EecccC
Q 015149 118 NWAYAS 123 (412)
Q Consensus 118 ~~~~~~ 123 (412)
+++..+
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998654
No 243
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-17 Score=118.75 Aligned_cols=76 Identities=33% Similarity=0.475 Sum_probs=72.9
Q ss_pred ceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
++|||+|||+++++++|+++|++||+|.++.+..++.+|+++|||||+|.+.++|.+|++.++ ..++|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 369999999999999999999999999999999999899999999999999999999999888 9999999999986
No 244
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.4e-17 Score=122.30 Aligned_cols=78 Identities=26% Similarity=0.501 Sum_probs=71.5
Q ss_pred CCcceEEEecCCC-CCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCC
Q 015149 250 PQYTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328 (412)
Q Consensus 250 ~~~~~l~V~nL~~-~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~ 328 (412)
++.++|||+|||. .+++++|+++|+.| |.|.+|.+. +|||||+|.+.++|.+|++.|||..+.|+.|+|.|+++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~--G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTT--CCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 4558999999998 99999999999999 999999996 789999999999999999999999999999999999876
Q ss_pred CCC
Q 015149 329 TPP 331 (412)
Q Consensus 329 ~~~ 331 (412)
..+
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 245
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=124.60 Aligned_cols=83 Identities=28% Similarity=0.443 Sum_probs=78.2
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
..++|||+|||+++++++|+++|+.||.|..++++.++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 357899999999999999999999999999999999999999999999999999999999997 9999999999999997
Q ss_pred CCCC
Q 015149 211 KGAT 214 (412)
Q Consensus 211 ~~~~ 214 (412)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7644
No 246
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.9e-17 Score=122.89 Aligned_cols=79 Identities=22% Similarity=0.359 Sum_probs=73.0
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEE
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V 322 (412)
....++|||+|||..+++++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|++. ||..|+|+.|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQY--GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3455899999999999999999999999 99999999876 58999999999999999999 999999999999
Q ss_pred EecCCCCC
Q 015149 323 SWGSKPTP 330 (412)
Q Consensus 323 ~~a~~~~~ 330 (412)
.|++++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99987654
No 247
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.6e-17 Score=122.32 Aligned_cols=85 Identities=19% Similarity=0.295 Sum_probs=73.2
Q ss_pred CCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeec---CCCCEEEEEecCHHHHHHHHHHhCCCccCCceeE
Q 015149 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (412)
Q Consensus 40 ~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~---~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~ 116 (412)
......+.++|||+|||+++++++|+++|++||.|. ++.+ +.+|||||+|.+.++|.+|+..|++..|.|+.|+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~---~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE---CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE---EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 334566789999999999999999999999999773 4433 3578999999999999999999999999999999
Q ss_pred EEecccCCCCc
Q 015149 117 VNWAYASSQRE 127 (412)
Q Consensus 117 v~~~~~~~~~~ 127 (412)
|.++.++....
T Consensus 85 v~~a~~~~~~~ 95 (101)
T 2fc9_A 85 LELQGPRGSPN 95 (101)
T ss_dssp EEECSSCCCCC
T ss_pred EEEcCCCCCCC
Confidence 99998775443
No 248
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=9.7e-17 Score=123.72 Aligned_cols=95 Identities=23% Similarity=0.424 Sum_probs=84.1
Q ss_pred CCceeEEEecccCCCCcCCCCCceEEECCCCcc-ccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHH
Q 015149 111 FGQPIKVNWAYASSQREDTSGHFNVFVGDLSPE-VTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQS 189 (412)
Q Consensus 111 ~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ 189 (412)
.|..|.+..+............++|||+|||++ +++++|+++|++||.|.++.+ ++|||||+|.+.++|..
T Consensus 6 ~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~ 77 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARA 77 (110)
T ss_dssp CSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHH
T ss_pred CCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHH
Confidence 466777777766666666667789999999999 999999999999999999988 48999999999999999
Q ss_pred HHHHhCCceeCCeEEEEEEccCCC
Q 015149 190 AINDLNGKWLGNRQIRCNWAAKGA 213 (412)
Q Consensus 190 ai~~l~~~~~~g~~l~v~~~~~~~ 213 (412)
|++.|++..+.|+.|.|+++....
T Consensus 78 A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 78 AVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHHHHTTCEETTEECCEEESCCCC
T ss_pred HHHHcCCCEECCeEEEEEECCCCC
Confidence 999999999999999999997543
No 249
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.9e-17 Score=125.45 Aligned_cols=77 Identities=27% Similarity=0.502 Sum_probs=72.5
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
+.++|||+|||..+++++|+++|+.| |.|.++++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEV--GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTT--SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhc--CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 45899999999999999999999999 99999999876 69999999999999999999999999999999999
Q ss_pred cCCCC
Q 015149 325 GSKPT 329 (412)
Q Consensus 325 a~~~~ 329 (412)
+++..
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 98665
No 250
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=1.6e-16 Score=120.97 Aligned_cols=79 Identities=28% Similarity=0.535 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccC
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~ 123 (412)
..+.++|||+|||+++++++|+++|++||+|.+|.+. ++||||+|.+.++|.+|++.|++..|.|+.|+|.++.++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 4567889999999999999999999999999999886 459999999999999999999999999999999999876
Q ss_pred CCC
Q 015149 124 SQR 126 (412)
Q Consensus 124 ~~~ 126 (412)
...
T Consensus 84 ~~~ 86 (103)
T 2dgu_A 84 DQK 86 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 251
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.9e-16 Score=118.62 Aligned_cols=80 Identities=29% Similarity=0.497 Sum_probs=72.5
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhcc--CCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEe
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSST--GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~--G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~ 119 (412)
....+.++|||+|||+++++++|+++|++| |.|.+|.+. ++||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 344667899999999999999999999999 889988764 57999999999999999999999999999999999
Q ss_pred cccCCC
Q 015149 120 AYASSQ 125 (412)
Q Consensus 120 ~~~~~~ 125 (412)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987654
No 252
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=1.4e-16 Score=129.07 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=70.2
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc--ccEEEEEeCCHHHHHHHHHHcCCCeeCC--eeeEEEecCC
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGSK 327 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~--kg~afV~f~~~~~A~~A~~~l~g~~l~g--~~l~V~~a~~ 327 (412)
..+|||+||++.+|+++|+++|++| |.|++|.+..+ +|||||+|.+.++|.+|++.|||..|.| +.|+|.|+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~f--G~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKF--GTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHH--SCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 4679999999999999999999999 99999999744 6799999999999999999999999965 9999999997
Q ss_pred CC
Q 015149 328 PT 329 (412)
Q Consensus 328 ~~ 329 (412)
+.
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 253
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.5e-17 Score=125.10 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=77.2
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCe-eeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTC-SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v-~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
.....++|||+|||+++++++|+++|+.||.| .+++|+.|+ +|+++|||||+|.+.++|.+|++. ++..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 44567899999999999999999999999999 899999997 999999999999999999999996 999999999999
Q ss_pred EEccCC
Q 015149 207 NWAAKG 212 (412)
Q Consensus 207 ~~~~~~ 212 (412)
.++..+
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 254
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=119.29 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=69.3
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
..+.++|||+|||.++++++|+++|+.| |.| +++.+ +|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKA--TFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSC--SEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 3455899999999999999999999999 887 34433 7999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 015149 324 WGSKPTPP 331 (412)
Q Consensus 324 ~a~~~~~~ 331 (412)
|++++..+
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 99877543
No 255
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=113.88 Aligned_cols=75 Identities=20% Similarity=0.206 Sum_probs=66.6
Q ss_pred Ccce-EEEecCCCCCCHHH----HHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 251 QYTT-VYVGNLSSEVTSVD----LHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 251 ~~~~-l~V~nL~~~~t~~~----L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
++.+ |||+|||+++++++ |+++|+.|| |+|.+|. .|+|||+|.+.++|.+|++.|+|..|.||+|+|.|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG-G~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCG-GKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTT-CCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcC-CeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 3455 99999999999988 558999993 3999993 399999999999999999999999999999999999
Q ss_pred CCCCC
Q 015149 326 SKPTP 330 (412)
Q Consensus 326 ~~~~~ 330 (412)
+....
T Consensus 82 ~~~sd 86 (96)
T 2diu_A 82 PKNRE 86 (96)
T ss_dssp CCSCC
T ss_pred CCCcc
Confidence 87764
No 256
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.4e-17 Score=122.53 Aligned_cols=74 Identities=15% Similarity=0.276 Sum_probs=69.2
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
..++|||+|||.++|+++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|+. ++|..|+|+.|+|.|+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~--G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTS--SCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhc--CCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 34899999999999999999999999 99999999875 7999999999999999999 8999999999999987
Q ss_pred CC
Q 015149 326 SK 327 (412)
Q Consensus 326 ~~ 327 (412)
+.
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 257
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9.7e-17 Score=123.84 Aligned_cols=85 Identities=19% Similarity=0.242 Sum_probs=77.5
Q ss_pred CCCCceEEECCCCccccHHHHH---HHhhcCCCeeeEEEeecCCCC---CcccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 015149 129 TSGHFNVFVGDLSPEVTDATLF---ACFSVFPTCSDARVMWDQKTG---RSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~---~~f~~~G~v~~~~~~~d~~~~---~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~ 202 (412)
....++|||+|||+++++++|+ ++|++||+|.++.+..++.++ +++|||||+|.+.++|.+|++.|++..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456789999999999999999 999999999999999887654 5669999999999999999999999999999
Q ss_pred EEEEEEccCCC
Q 015149 203 QIRCNWAAKGA 213 (412)
Q Consensus 203 ~l~v~~~~~~~ 213 (412)
.|.|.++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999997764
No 258
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.1e-16 Score=120.09 Aligned_cols=79 Identities=18% Similarity=0.345 Sum_probs=71.3
Q ss_pred CCCCCCEEEEcCCCc-cCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc
Q 015149 43 DASTCRSVYVGNIHP-QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~-~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~ 121 (412)
+..+.++|||+|||+ ++++++|+++|++||+|.+|.+. +|||||+|.+.++|.+|+..|++..+.|+.|+|+++.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 345688999999998 99999999999999999999884 6899999999999999999999999999999999997
Q ss_pred cCCC
Q 015149 122 ASSQ 125 (412)
Q Consensus 122 ~~~~ 125 (412)
+...
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6654
No 259
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.6e-17 Score=125.22 Aligned_cols=81 Identities=25% Similarity=0.338 Sum_probs=76.8
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
..++|||+|||.++++++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|.+|+ .+++..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3478999999999999999999999999999999999999999999999999999999999 899999999999999986
Q ss_pred CC
Q 015149 211 KG 212 (412)
Q Consensus 211 ~~ 212 (412)
.+
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 260
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=121.27 Aligned_cols=83 Identities=25% Similarity=0.304 Sum_probs=76.3
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeee-EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD-ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~-~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
.....++|||+|||+++++++|+++|+.||.|.+ +++..+ .+|+++|||||+|.+.++|.+|+.. ++..++|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999987 888888 7899999999999999999999996 999999999999
Q ss_pred EEccCC
Q 015149 207 NWAAKG 212 (412)
Q Consensus 207 ~~~~~~ 212 (412)
.++...
T Consensus 89 ~~~~~~ 94 (104)
T 1wg5_A 89 FKSSRA 94 (104)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 998654
No 261
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.4e-16 Score=117.71 Aligned_cols=87 Identities=25% Similarity=0.289 Sum_probs=75.9
Q ss_pred CCCCCCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeE
Q 015149 37 NLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (412)
Q Consensus 37 ~~~~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~ 116 (412)
..+......+.++|||+|| ++++++|+++|++||+|.+|.+. +.+|||||+|.+.++|.+|+..|++..|.|+.|+
T Consensus 5 s~~~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 5 SSGERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CSSCCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3344455667899999996 89999999999999999999884 5778999999999999999999999999999999
Q ss_pred EEecccCCCCc
Q 015149 117 VNWAYASSQRE 127 (412)
Q Consensus 117 v~~~~~~~~~~ 127 (412)
|.|+.++....
T Consensus 81 v~~a~~~~~~~ 91 (97)
T 1x5p_A 81 VNIARKQPMLD 91 (97)
T ss_dssp EECCSSCCCCC
T ss_pred EEECCCCCCCC
Confidence 99998765443
No 262
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3e-16 Score=122.10 Aligned_cols=86 Identities=17% Similarity=0.342 Sum_probs=75.8
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCc----ceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPL----EGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i----~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
...+.++|||+|||+++++++|+++|+.||.| ..+.+...+.+|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999998 55666656678999999999999999999999999999999999
Q ss_pred ecccCCCCcC
Q 015149 119 WAYASSQRED 128 (412)
Q Consensus 119 ~~~~~~~~~~ 128 (412)
|+.++..+..
T Consensus 101 ~a~~~~~~~~ 110 (115)
T 2cpx_A 101 FGKNKKQRSS 110 (115)
T ss_dssp ECCCCSCCCC
T ss_pred EccCCCCCCC
Confidence 9987765443
No 263
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=1.1e-17 Score=124.03 Aligned_cols=80 Identities=28% Similarity=0.473 Sum_probs=74.0
Q ss_pred ceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 133 ~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
++|||+|||+++++++|+++|+.||.|.++++..++.+|+++|||||+|.+.+ |.+|+..+++..++|+.|.|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999999999999999999999999999 99999999999999999999998765
Q ss_pred C
Q 015149 213 A 213 (412)
Q Consensus 213 ~ 213 (412)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 264
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=1.2e-16 Score=117.63 Aligned_cols=79 Identities=16% Similarity=0.323 Sum_probs=70.4
Q ss_pred CCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC----CCEEEEEecCHHHHHHHHHHhCCCccCCceeE
Q 015149 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (412)
Q Consensus 41 ~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~----~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~ 116 (412)
.....+.++|||+|||+++++++|+++|++||+|.+|.++.++. +|||||+|.+.++|.+|+ .+++..+.|+.|.
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~ 83 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVID 83 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEE
Confidence 34556788999999999999999999999999999999988753 679999999999999999 5688889999999
Q ss_pred EEec
Q 015149 117 VNWA 120 (412)
Q Consensus 117 v~~~ 120 (412)
|+++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 265
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.68 E-value=7.1e-17 Score=132.06 Aligned_cols=79 Identities=23% Similarity=0.245 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccC--CcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTG--PLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G--~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
.+.++|||+|||+++++++|+++|+.|| .|.+|+++.++ ++|||||+|.+.++|.+||+.||+..|.|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999875 36799999999999999999999999999999999
Q ss_pred ecccC
Q 015149 119 WAYAS 123 (412)
Q Consensus 119 ~~~~~ 123 (412)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98643
No 266
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=119.03 Aligned_cols=80 Identities=36% Similarity=0.590 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCC-cceEEEeecCCCCEEEEEecCHHHHHHHHHHhCC-CccCCceeEEEecc
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG-RHIFGQPIKVNWAY 121 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~-i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~-~~~~g~~l~v~~~~ 121 (412)
..+.++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..+.|+.|+|.|+.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 355788999999999999999999999999 6666653 468999999999999999999999 99999999999998
Q ss_pred cCCCC
Q 015149 122 ASSQR 126 (412)
Q Consensus 122 ~~~~~ 126 (412)
++..+
T Consensus 82 ~~~~~ 86 (93)
T 2cqh_A 82 SKKLR 86 (93)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76543
No 267
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.1e-16 Score=122.71 Aligned_cols=84 Identities=21% Similarity=0.507 Sum_probs=77.5
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee--------
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL-------- 199 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~-------- 199 (412)
.....++|||+|||+++++++|+++|+.||.|.+++++.++ ++.++|||||+|.+.++|.+|++.|+|..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34566899999999999999999999999999999999997 899999999999999999999999999999
Q ss_pred CCeEEEEEEccCC
Q 015149 200 GNRQIRCNWAAKG 212 (412)
Q Consensus 200 ~g~~l~v~~~~~~ 212 (412)
.+++|.|.|+.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999998754
No 268
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=128.43 Aligned_cols=83 Identities=37% Similarity=0.540 Sum_probs=77.6
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 206 (412)
......++|||+|||+++++++|+++|+.||.|.++++..++.+++++|||||+|.+.++|.+|++.+++..++|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEc
Q 015149 207 NWA 209 (412)
Q Consensus 207 ~~~ 209 (412)
+++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 269
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=122.11 Aligned_cols=83 Identities=16% Similarity=0.260 Sum_probs=75.7
Q ss_pred CCCCCceEEECCCCccc------cHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 015149 128 DTSGHFNVFVGDLSPEV------TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~------~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g 201 (412)
.....++|||+|||+.+ ++++|+++|++||.|.++.+. +.+|+++|||||+|.+.++|..|+..|+|..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34456899999999999 789999999999999999888 4789999999999999999999999999999999
Q ss_pred e-EEEEEEccCC
Q 015149 202 R-QIRCNWAAKG 212 (412)
Q Consensus 202 ~-~l~v~~~~~~ 212 (412)
+ .|.|.++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999998654
No 270
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=3.3e-16 Score=128.80 Aligned_cols=79 Identities=29% Similarity=0.413 Sum_probs=73.4
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
.+.++|||+|||..+++++|+++|+.| |.|.+|.|+.+ +|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKS--GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 455899999999999999999999999 99999999866 5899999999999999999999999999999999
Q ss_pred ecCCCCC
Q 015149 324 WGSKPTP 330 (412)
Q Consensus 324 ~a~~~~~ 330 (412)
|+++..+
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987554
No 271
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=9.9e-17 Score=127.49 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=76.4
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCC---eeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPT---CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~---v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 204 (412)
+....++|||+|||++++++||+++|+.||. |.++++++|+. |+++|||||+|.+.++|++|++ +++..++|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3455688999999999999999999999999 89999999976 9999999999999999999999 99999999999
Q ss_pred EEEEccC
Q 015149 205 RCNWAAK 211 (412)
Q Consensus 205 ~v~~~~~ 211 (412)
.|.++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9999854
No 272
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=1.5e-16 Score=124.02 Aligned_cols=83 Identities=16% Similarity=0.258 Sum_probs=76.5
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCC---eeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPT---CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~---v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 204 (412)
.....++|||+|||+++++++|+++|+.||. |..++++.++. |+++|||||+|.+.++|++|++ +++..|+|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3455688999999999999999999999999 89999999976 9999999999999999999999 99999999999
Q ss_pred EEEEccCC
Q 015149 205 RCNWAAKG 212 (412)
Q Consensus 205 ~v~~~~~~ 212 (412)
.|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998543
No 273
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=120.91 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=75.1
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
.....++|||+|||++++++||+++|+.||.+ ++++++|+ +++++|||||+|.+.++|++||+ +++..++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34556789999999999999999999999955 99999997 89999999999999999999996 79999999999999
Q ss_pred EccCCC
Q 015149 208 WAAKGA 213 (412)
Q Consensus 208 ~~~~~~ 213 (412)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 886553
No 274
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=2.9e-16 Score=120.65 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=69.9
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeE
Q 015149 248 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 321 (412)
Q Consensus 248 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~ 321 (412)
.....++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.+ |..|+|+.|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQF--GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHcc--CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 34456899999999999999999999999 99999999876 689999999999999999986 5999999999
Q ss_pred EEecCCCCC
Q 015149 322 CSWGSKPTP 330 (412)
Q Consensus 322 V~~a~~~~~ 330 (412)
|.++.++..
T Consensus 98 V~~a~~~~~ 106 (109)
T 2rs2_A 98 PKVAFPRRA 106 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999986654
No 275
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=3.4e-16 Score=122.10 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=70.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-ccE-EEEEeCCHHHHHHHHHHcCCCeeCC--eeeEEEecC
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGF-GFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGS 326 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-kg~-afV~f~~~~~A~~A~~~l~g~~l~g--~~l~V~~a~ 326 (412)
..-.|||+||++.+|+++|+++|++| |.|.+|++..+ +|+ |||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~y--G~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKF--GTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTS--SCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCc--CCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 33678899999999999999999999 99999998765 677 9999999999999999999999988 999999998
Q ss_pred CCC
Q 015149 327 KPT 329 (412)
Q Consensus 327 ~~~ 329 (412)
+..
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 765
No 276
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.6e-16 Score=120.99 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=71.7
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccE----EEEEeec--cccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEE
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI----EDVRVQR--DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v----~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V 322 (412)
..+.++|||+|||.++++++|+++|+.| |.| ..+++.. .+|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARF--QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHH--HHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 888 5555553 3799999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 015149 323 SWGSKPTPP 331 (412)
Q Consensus 323 ~~a~~~~~~ 331 (412)
.|+++....
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpx_A 100 EFGKNKKQR 108 (115)
T ss_dssp EECCCCSCC
T ss_pred EEccCCCCC
Confidence 999876653
No 277
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.5e-17 Score=120.00 Aligned_cols=74 Identities=26% Similarity=0.319 Sum_probs=69.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
+.++|||+|||.++++++|+++|+.| |.|.++++..+ +|||||+|.+.++|.+|++.|||..|.|+.|+|+|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPY--GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTT--SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45899999999999999999999999 99999999876 68999999999999999999999999999999987
Q ss_pred cC
Q 015149 325 GS 326 (412)
Q Consensus 325 a~ 326 (412)
.+
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 278
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-15 Score=116.39 Aligned_cols=78 Identities=24% Similarity=0.437 Sum_probs=70.9
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
.+.++|||+|||..+++++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|++ ++..|+|+.|+|.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTF--GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhc--CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 445899999999999999999999999 99999999876 6899999999999999998 4789999999999
Q ss_pred ecCCCCCC
Q 015149 324 WGSKPTPP 331 (412)
Q Consensus 324 ~a~~~~~~ 331 (412)
|++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99876543
No 279
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.5e-17 Score=126.54 Aligned_cols=77 Identities=29% Similarity=0.440 Sum_probs=71.1
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
...++|||+|||.++++++|+++|+.| |.|.+|+++.+ +|||||+|.+.++|.+|+ .|||..|+|+.|+|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAV--GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 345899999999999999999999999 99999999865 689999999999999999 999999999999999
Q ss_pred ecCCCC
Q 015149 324 WGSKPT 329 (412)
Q Consensus 324 ~a~~~~ 329 (412)
|+++..
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 987643
No 280
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.9e-16 Score=112.51 Aligned_cols=77 Identities=17% Similarity=0.325 Sum_probs=67.9
Q ss_pred CCCE-EEEcCCCccCCHHH----HHHHhhccC-CcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEe
Q 015149 46 TCRS-VYVGNIHPQVTNAL----LQEVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (412)
Q Consensus 46 ~~~t-l~V~nLp~~~t~~~----L~~~f~~~G-~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~ 119 (412)
++.| |||+|||+++++++ |+++|++|| +|.+| ..|+|||.|.+.++|.+|++.|+|..+.||+|+|.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 4666 99999999999988 558999995 99987 239999999999999999999999999999999999
Q ss_pred cccCCCCcC
Q 015149 120 AYASSQRED 128 (412)
Q Consensus 120 ~~~~~~~~~ 128 (412)
++.++.-..
T Consensus 81 A~~~sd~~~ 89 (96)
T 2diu_A 81 TPKNRELCE 89 (96)
T ss_dssp SCCSCCCCC
T ss_pred cCCCcceeE
Confidence 987765433
No 281
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.67 E-value=9.9e-17 Score=120.25 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=69.7
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEe
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~ 119 (412)
...+++|||+|||+++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|++.||+..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3446899999999999999999999999999988888754 358999999999999999999999999999999998
Q ss_pred cc
Q 015149 120 AY 121 (412)
Q Consensus 120 ~~ 121 (412)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 282
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=120.15 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=70.3
Q ss_pred CcceEEEecCCCCC------CHHHHHHHHhhcCcccEEEEEeecc----ccEEEEEeCCHHHHHHHHHHcCCCeeCCe-e
Q 015149 251 QYTTVYVGNLSSEV------TSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGK-P 319 (412)
Q Consensus 251 ~~~~l~V~nL~~~~------t~~~L~~~F~~~~~G~v~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~g~-~ 319 (412)
..++|||+|||..+ ++++|+++|++| |.|.+|.+.+. +|||||+|.+.++|.+|+..|||..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35899999999999 789999999999 99999999843 79999999999999999999999999998 9
Q ss_pred eEEEecCCC
Q 015149 320 IKCSWGSKP 328 (412)
Q Consensus 320 l~V~~a~~~ 328 (412)
|+|.|++..
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998754
No 283
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=3.1e-16 Score=123.71 Aligned_cols=76 Identities=26% Similarity=0.503 Sum_probs=71.2
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
.++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|+ .|||..|+|+.|+|.|+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSC--GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTT--SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 4799999999999999999999999 99999999876 789999999999999999 79999999999999999
Q ss_pred CCCCC
Q 015149 326 SKPTP 330 (412)
Q Consensus 326 ~~~~~ 330 (412)
++..+
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 86544
No 284
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=122.61 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCC
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~ 124 (412)
++.++|||+|||+++++++|+++|++||+|.+|.+.+ .++||||+|.+.++|.+|+..||+..+.|+.|+|.|+....
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 4568899999999999999999999999999988864 67899999999999999999999999999999999997543
No 285
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.2e-16 Score=120.06 Aligned_cols=78 Identities=22% Similarity=0.483 Sum_probs=71.7
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCee--------
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARIL-------- 315 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l-------- 315 (412)
....++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPF--GQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 3455899999999999999999999999 99999999876 78999999999999999999999999
Q ss_pred CCeeeEEEecCCC
Q 015149 316 CGKPIKCSWGSKP 328 (412)
Q Consensus 316 ~g~~l~V~~a~~~ 328 (412)
.+++|+|.|++++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 6888999999854
No 286
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=6e-16 Score=117.56 Aligned_cols=86 Identities=30% Similarity=0.509 Sum_probs=77.3
Q ss_pred CcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 126 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
.......++|||+|||+++++++|+++|+.|+ .+.++.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34456678999999999999999999999774 678888888999999999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 015149 206 CNWAAKGAT 214 (412)
Q Consensus 206 v~~~~~~~~ 214 (412)
|.++.++..
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999977643
No 287
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.2e-17 Score=127.26 Aligned_cols=84 Identities=25% Similarity=0.406 Sum_probs=77.0
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
.....++|||+|||+++++++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|.+||. +++..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34556899999999999999999999999999987777777899999999999999999999999 99999999999999
Q ss_pred EccCC
Q 015149 208 WAAKG 212 (412)
Q Consensus 208 ~~~~~ 212 (412)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 288
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=122.82 Aligned_cols=81 Identities=10% Similarity=0.031 Sum_probs=73.2
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCCc-ceEEEeecC---CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEE
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPL-EGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i-~~v~~~~~~---~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v 117 (412)
....+.++|||+|||+++++++|+++|+.||.| .+|+++.++ .+|||||+|.+.++|.+||+. ++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 345677899999999999999999999999999 889998865 578999999999999999965 999999999999
Q ss_pred EecccC
Q 015149 118 NWAYAS 123 (412)
Q Consensus 118 ~~~~~~ 123 (412)
.++..+
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998644
No 289
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=6e-16 Score=115.62 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=68.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecccc-EEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKG-FGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg-~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
..++|||+|||.++++++|+++|+.| |.|.+|.+.+..| ||||+|.+.++|.+|++ |||..|+|+.|+|.++.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAF--GPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGT--SCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 34799999999999999999999999 9999984444333 99999999999999999 99999999999999987654
Q ss_pred C
Q 015149 330 P 330 (412)
Q Consensus 330 ~ 330 (412)
.
T Consensus 84 ~ 84 (94)
T 2e5g_A 84 F 84 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 290
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.1e-16 Score=118.75 Aligned_cols=83 Identities=13% Similarity=0.086 Sum_probs=72.7
Q ss_pred CCCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcce-EEEeec---CCCCEEEEEecCHHHHHHHHHHhCCCccCCceeE
Q 015149 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEG-CKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (412)
Q Consensus 41 ~~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~-v~~~~~---~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~ 116 (412)
..+..+.++|||+|||+++++++|+++|+.||.|.+ |.++.+ +.+|||||+|.+.++|.+|+.. ++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 344567789999999999999999999999999987 777765 3478999999999999999976 99999999999
Q ss_pred EEecccCC
Q 015149 117 VNWAYASS 124 (412)
Q Consensus 117 v~~~~~~~ 124 (412)
|.++....
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99987554
No 291
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=122.23 Aligned_cols=79 Identities=27% Similarity=0.486 Sum_probs=72.9
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
...++|||+|||.++++++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|++. +|..|+|+.|+|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQW--GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSS--CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 345899999999999999999999999 99999999876 68999999999999999998 9999999999999
Q ss_pred ecCCCCCC
Q 015149 324 WGSKPTPP 331 (412)
Q Consensus 324 ~a~~~~~~ 331 (412)
|++++...
T Consensus 102 ~a~~~~~~ 109 (116)
T 1x4b_A 102 RAVAREES 109 (116)
T ss_dssp CCSSCCCC
T ss_pred ECCCCccC
Confidence 99877653
No 292
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7.3e-16 Score=117.09 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=68.9
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeec---cccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR---DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
..+.++|||+|||.++++++|+++|+.| +.|.-+.-.. .+|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS--VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC--SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC--eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3455899999999999999999999988 6554443221 2699999999999999999999999999999999999
Q ss_pred CCCCCC
Q 015149 326 SKPTPP 331 (412)
Q Consensus 326 ~~~~~~ 331 (412)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 877654
No 293
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=4e-16 Score=114.99 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=69.9
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
.++|||+|||.++++++|+++|++| .|.++++.+.+|+|||+|.+.++|.+|++.|||..++|++|+|.|+....
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~---~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY---DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS---CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC---CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 3789999999999999999999998 58888888889999999999999999999999999999999999986544
No 294
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.66 E-value=4.6e-17 Score=116.26 Aligned_cols=75 Identities=25% Similarity=0.473 Sum_probs=71.5
Q ss_pred eEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 134 ~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
+|||+|||+++++++|+++|+.||+|.++.+..++.++.++|||||+|.+.++|.+|++ +++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999999 5889999999999874
No 295
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.2e-16 Score=115.22 Aligned_cols=80 Identities=20% Similarity=0.288 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC---CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEe
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~---~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~ 119 (412)
...+.++|||+|||+++++++|+++|+.| .|.+|.++++. .+|||||+|.+.++|.+|+. +|+..|.|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34567899999999999999999999999 89999999874 36799999999999999998 999999999999999
Q ss_pred cccCC
Q 015149 120 AYASS 124 (412)
Q Consensus 120 ~~~~~ 124 (412)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 97664
No 296
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=7.5e-16 Score=124.34 Aligned_cols=76 Identities=33% Similarity=0.556 Sum_probs=70.5
Q ss_pred CCCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeE
Q 015149 248 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 321 (412)
Q Consensus 248 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~ 321 (412)
...+.++|||+|||..+++++|+++|+.| |.|.++++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhc--CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456899999999999999999999999 99999999876 79999999999999999999999999999999
Q ss_pred EEec
Q 015149 322 CSWG 325 (412)
Q Consensus 322 V~~a 325 (412)
|.||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9985
No 297
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=1.7e-16 Score=119.42 Aligned_cols=81 Identities=19% Similarity=0.405 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCccCCHHHHH----HHhhccCCcceEEEeec-CCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQ----EVFSSTGPLEGCKLIKK-DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~----~~f~~~G~i~~v~~~~~-~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
..++++|||+|||.++++++|+ ++|++||+|.+|.+.+. +.+|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999 99999999999988743 347899999999999999999999999999999999
Q ss_pred ecccCC
Q 015149 119 WAYASS 124 (412)
Q Consensus 119 ~~~~~~ 124 (412)
|+.++.
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 998654
No 298
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=119.78 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=72.3
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
...+|||+|||++++++||+++|+.| .|.+++|+.|+. |+++|||||+|.+.++|.+|+ .+++..++||.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35789999999999999999999999 899999999965 999999999999999999999 499999999999998874
Q ss_pred C
Q 015149 211 K 211 (412)
Q Consensus 211 ~ 211 (412)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 299
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=3.5e-16 Score=121.39 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=68.0
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCee-----eEEEec
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKP-----IKCSWG 325 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~-----l~V~~a 325 (412)
..++|||+|||.++++++|+++|+.| |.|.+|.+..+ |||||+|.+.++|.+|++.|||..|+|+. |+|..+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGG--SCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 34889999999999999999999999 99999999988 99999999999999999999999999998 777777
Q ss_pred CCCCC
Q 015149 326 SKPTP 330 (412)
Q Consensus 326 ~~~~~ 330 (412)
++..+
T Consensus 92 ~~~~~ 96 (115)
T 3beg_B 92 GPRSP 96 (115)
T ss_dssp C----
T ss_pred CCCCC
Confidence 65443
No 300
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=4.2e-16 Score=117.00 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=70.5
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEe-eccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCC
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV-QRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~ 327 (412)
..+.++|||+|||..+++++|+++|+.| |.|..+.. .+.+|||||+|.+.++|.+|++.|||..|+|+.|+|.|+++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~--g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDA--LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSE--EEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC--CcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 3456899999999999999999999999 98887711 12389999999999999999999999999999999999987
Q ss_pred CCC
Q 015149 328 PTP 330 (412)
Q Consensus 328 ~~~ 330 (412)
+..
T Consensus 91 ~~~ 93 (96)
T 1fjc_A 91 KGG 93 (96)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 301
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=3.8e-17 Score=124.00 Aligned_cols=84 Identities=29% Similarity=0.470 Sum_probs=76.8
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 207 (412)
.....++|||+|||+++++++|+++|+.||.|.. .++.++.+++++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3446789999999999999999999999999988 677777889999999999999999999999 99999999999999
Q ss_pred EccCCC
Q 015149 208 WAAKGA 213 (412)
Q Consensus 208 ~~~~~~ 213 (412)
++.++.
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 997654
No 302
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=6.2e-17 Score=154.50 Aligned_cols=79 Identities=18% Similarity=0.410 Sum_probs=73.3
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
.+.++|||+|||..+|+++|+++|+.| |.|+.|.|+.+ +|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVY--GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345899999999999999999999999 99999999876 7999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 015149 324 WGSKPTP 330 (412)
Q Consensus 324 ~a~~~~~ 330 (412)
|++....
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9986543
No 303
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=8.1e-16 Score=115.43 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=70.6
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEE-eecc--ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCC
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR-VQRD--KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~-i~~~--kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~ 327 (412)
..++|||+|||.++++++|+++|+.| |.|.+|+ ++.+ .|.|||+|.+.++|.+|++.|||..|+|+.|+|.|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQY--GVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHH--SCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34899999999999999999999999 9999994 7776 45699999999999999999999999999999999987
Q ss_pred CC
Q 015149 328 PT 329 (412)
Q Consensus 328 ~~ 329 (412)
..
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 304
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.66 E-value=1.3e-16 Score=113.88 Aligned_cols=69 Identities=25% Similarity=0.484 Sum_probs=65.2
Q ss_pred eEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 254 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 254 ~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
+|||+|||.++++++|+++|+.| |.|.++++.++ +|+|||+|.+.++|.+|++ |||..|+|+.|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF--GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT--SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999 99999999876 5899999999999999998 8999999999999985
No 305
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=5e-17 Score=120.56 Aligned_cols=75 Identities=28% Similarity=0.460 Sum_probs=67.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
++|||+|||.++++++|+++|+.| |.|.++++.++ +|+|||+|.+.+ |.+|+..|||..++|+.|+|.|+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF--GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH--TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc--CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 689999999999999999999999 99999999866 789999999999 999999999999999999999997
Q ss_pred CCCC
Q 015149 327 KPTP 330 (412)
Q Consensus 327 ~~~~ 330 (412)
+...
T Consensus 79 ~~~~ 82 (90)
T 2ki2_A 79 PKKS 82 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6654
No 306
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=116.17 Aligned_cols=72 Identities=17% Similarity=0.333 Sum_probs=67.2
Q ss_pred ceEEECCCCccc------cHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCe-EEE
Q 015149 133 FNVFVGDLSPEV------TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR-QIR 205 (412)
Q Consensus 133 ~~l~v~nlp~~~------~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~-~l~ 205 (412)
++|||+|||..+ ++++|+++|++||.|.++.+. +.+|+++|||||+|.+.++|.+|++.|+|..++|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999999999887 46889999999999999999999999999999999 886
Q ss_pred E
Q 015149 206 C 206 (412)
Q Consensus 206 v 206 (412)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 5
No 307
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=119.97 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=68.1
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeec------cccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR------DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
.+.++|||+|||.++++++|+++|+.| |.|.. .++. .+|||||+|.+.++|.+|++ |||..|.|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISEL--FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHH--HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 345899999999999999999999999 87766 3333 38999999999999999998 99999999999999
Q ss_pred ecCCCCC
Q 015149 324 WGSKPTP 330 (412)
Q Consensus 324 ~a~~~~~ 330 (412)
|++++..
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9987654
No 308
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=5.6e-16 Score=114.04 Aligned_cols=73 Identities=25% Similarity=0.428 Sum_probs=67.3
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcC--cc-------cEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeE
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALC--VG-------TIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIK 321 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~--~G-------~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~ 321 (412)
+.++|||+|||.++++++|+++|+.|+ .| .|.++++.+++|||||+|.+.++|.+|+ .|||..|+|+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 458999999999999999999999991 02 7999999999999999999999999999 9999999999999
Q ss_pred EEe
Q 015149 322 CSW 324 (412)
Q Consensus 322 V~~ 324 (412)
|+.
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 974
No 309
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=122.70 Aligned_cols=83 Identities=17% Similarity=0.287 Sum_probs=76.7
Q ss_pred cCCCCCceEEECCCCccccHHHHHHHhhcCCC---eeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 015149 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPT---CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203 (412)
Q Consensus 127 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~---v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~ 203 (412)
.+....++|||+|||+++++++|+++|+.||. |.+++++.|+. |+++|||||+|.+.++|.+|++ +++..++|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34556788999999999999999999999988 89999999976 9999999999999999999999 9999999999
Q ss_pred EEEEEccC
Q 015149 204 IRCNWAAK 211 (412)
Q Consensus 204 l~v~~~~~ 211 (412)
|.|.++.+
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99999864
No 310
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.8e-16 Score=119.91 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=72.1
Q ss_pred ceEEECCC----CccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecC----HHH----HHHHHH--HhCCce
Q 015149 133 FNVFVGDL----SPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRN----QED----AQSAIN--DLNGKW 198 (412)
Q Consensus 133 ~~l~v~nl----p~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~----~~~----A~~ai~--~l~~~~ 198 (412)
..|||+|| |+.+++.+|+++|+.||+|.++.++.|+.||+++|||||+|.+ .++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 9999999999999999999999999999999999999999996 333 888988 789999
Q ss_pred eCCeEEEEEEccCC
Q 015149 199 LGNRQIRCNWAAKG 212 (412)
Q Consensus 199 ~~g~~l~v~~~~~~ 212 (412)
|+|+.|+|.+-...
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987544
No 311
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=4.3e-16 Score=121.43 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=72.3
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCC---cceEEEeecCC---CCEEEEEecCHHHHHHHHHHhCCCccCCcee
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGP---LEGCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFGQPI 115 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~---i~~v~~~~~~~---~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l 115 (412)
....+.++|||+|||+++|+++|+++|+.||. |.+|+++.++. +|||||+|.+.++|.+||+ +++..|.|+.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 34566789999999999999999999999998 89999988753 6799999999999999997 99999999999
Q ss_pred EEEeccc
Q 015149 116 KVNWAYA 122 (412)
Q Consensus 116 ~v~~~~~ 122 (412)
+|.++..
T Consensus 91 ~V~~a~~ 97 (118)
T 2db1_A 91 EVFKSHR 97 (118)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9998853
No 312
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.4e-16 Score=116.98 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=71.7
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC---CCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~---~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
....+.++|||+|||+++|++||+++|++||.+ +|+++.++. +|||||+|.+.++|.+|| .+|+..|.|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 345667899999999999999999999999954 899988753 679999999999999999 689999999999999
Q ss_pred ecccCC
Q 015149 119 WAYASS 124 (412)
Q Consensus 119 ~~~~~~ 124 (412)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 887554
No 313
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.4e-16 Score=118.16 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=69.3
Q ss_pred CCCCCEEEE--cCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCcc-----CCceeE
Q 015149 44 ASTCRSVYV--GNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHI-----FGQPIK 116 (412)
Q Consensus 44 ~~~~~tl~V--~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~-----~g~~l~ 116 (412)
..++++||| +||++++++++|+++|++||+|.+|.+.. .+|||||+|.+.++|.+|++.|||..+ .|++|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 345788999 77999999999999999999999988764 478999999999999999999999988 688999
Q ss_pred EEecccC
Q 015149 117 VNWAYAS 123 (412)
Q Consensus 117 v~~~~~~ 123 (412)
|.|+...
T Consensus 100 v~~a~~~ 106 (114)
T 2cq2_A 100 LNFVEKV 106 (114)
T ss_dssp EEEESCC
T ss_pred EEecccC
Confidence 9988643
No 314
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=6.3e-16 Score=113.91 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCC
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~ 124 (412)
+.+++|||+|||+++++++|+++|++| +|.+|.+. +++|||||+|.+.++|.+|++.||+..+.|++|+|+++....
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 457889999999999999999999999 99999884 678899999999999999999999999999999999986554
No 315
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=7.3e-17 Score=128.66 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=73.8
Q ss_pred CEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCCCCcCCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEe
Q 015149 86 SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVM 165 (412)
Q Consensus 86 g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~ 165 (412)
++|+..|.-++.+..++...... ..|....-... ...........++|||+|||++++++||+++|+.|| |.+|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g-~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~ 78 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSG-DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIE 78 (139)
T ss_dssp ---------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCC-CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEE
Confidence 46777777777666666443322 22222211111 111123344567899999999999999999999999 6799999
Q ss_pred ecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 015149 166 WDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213 (412)
Q Consensus 166 ~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~ 213 (412)
+|+. ++++|||||+|.+.++|++|| .+++..|.|+.|.|.++....
T Consensus 79 ~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 79 IGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred ECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 9975 999999999999999999999 689999999999999886653
No 316
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=9.8e-16 Score=119.51 Aligned_cols=79 Identities=23% Similarity=0.405 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCE-EEEEecCHHHHHHHHHHhCCCccCC--ceeEEEeccc
Q 015149 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY-GFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAYA 122 (412)
Q Consensus 46 ~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~-afV~f~~~~~A~~Al~~l~~~~~~g--~~l~v~~~~~ 122 (412)
.-..|||+||++.+|+++|+++|++||+|.+|++..+. +|+ |||+|.+.++|.+|++.|||..|.| +.|+|.|++.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 34557899999999999999999999999999888754 576 9999999999999999999999998 8999999987
Q ss_pred CCC
Q 015149 123 SSQ 125 (412)
Q Consensus 123 ~~~ 125 (412)
...
T Consensus 106 ~~l 108 (130)
T 3zzy_A 106 TSL 108 (130)
T ss_dssp SSC
T ss_pred Cce
Confidence 654
No 317
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=2.4e-16 Score=137.54 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=77.0
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCC--CeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFP--TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G--~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
..++|||+||++++++++|+++|+.|| .|.+|+|+.|+.++++||||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 015149 209 AAKG 212 (412)
Q Consensus 209 ~~~~ 212 (412)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8643
No 318
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=2.1e-15 Score=117.24 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=68.5
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCE-EEEEecCHHHHHHHHHHhCCCccCC--ceeEEEecccCC
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY-GFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAYASS 124 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~-afV~f~~~~~A~~Al~~l~~~~~~g--~~l~v~~~~~~~ 124 (412)
..|||+||++.+++++|+++|++||.|.+|+++.. .|| |||+|.+.++|..|++.|||..|.| +.|+|.+++++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 34679999999999999999999999999999764 486 9999999999999999999999987 689999998765
Q ss_pred C
Q 015149 125 Q 125 (412)
Q Consensus 125 ~ 125 (412)
.
T Consensus 104 l 104 (124)
T 2e5i_A 104 L 104 (124)
T ss_dssp C
T ss_pred c
Confidence 3
No 319
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.4e-16 Score=113.15 Aligned_cols=72 Identities=19% Similarity=0.419 Sum_probs=67.4
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
++|||+|||+++++++|+++|++||+|.+|.+.+++ ++|+|||+|.+.++|.+|++.++ ..+.|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999998865 37899999999999999999888 9999999999986
No 320
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=2.8e-16 Score=117.97 Aligned_cols=82 Identities=13% Similarity=0.235 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeccc
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~ 122 (412)
...+.++|||+|||+++++++|+++|+.||.|..+ ....+.+|||||+|.+.++|.+|+..|++..+.|+.|+|.++.+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 34567899999999999999999999999998876 33334578999999999999999999999999999999999976
Q ss_pred CCC
Q 015149 123 SSQ 125 (412)
Q Consensus 123 ~~~ 125 (412)
+..
T Consensus 91 ~~~ 93 (96)
T 1fjc_A 91 KGG 93 (96)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 321
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=114.44 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=64.4
Q ss_pred ceEEEecCCCCC------CHHHHHHHHhhcCcccEEEEEeecc----ccEEEEEeCCHHHHHHHHHHcCCCeeCCe-eeE
Q 015149 253 TTVYVGNLSSEV------TSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGK-PIK 321 (412)
Q Consensus 253 ~~l~V~nL~~~~------t~~~L~~~F~~~~~G~v~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~g~-~l~ 321 (412)
++|||+|||..+ ++++|+++|++| |.|.+|.+.++ +|||||+|.+.++|.+|++.|||..|+|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999 99999999854 79999999999999999999999999999 888
Q ss_pred EE
Q 015149 322 CS 323 (412)
Q Consensus 322 V~ 323 (412)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 73
No 322
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9.2e-16 Score=114.59 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=68.6
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC-CCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEeccc
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~-~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~ 122 (412)
....++|||+|||+++++++|+++|++||+|.+| +.++. ..||||+|.+.++|.+|+. |++..|.|+.|.|+++..
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 4567899999999999999999999999999987 33332 2299999999999999998 999999999999998875
Q ss_pred CCC
Q 015149 123 SSQ 125 (412)
Q Consensus 123 ~~~ 125 (412)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 323
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.4e-16 Score=121.45 Aligned_cols=80 Identities=24% Similarity=0.232 Sum_probs=72.9
Q ss_pred CCCceEEECCCCccccHHHHHHHhhcCCCe----eeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTC----SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v----~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
....+|||+|||++++++||+++|+.||.| .+|+|+.| .+|+++|||||+|.+.++|.+|++. ++..++|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 345789999999999999999999999985 68999988 5899999999999999999999995 99999999999
Q ss_pred EEEccC
Q 015149 206 CNWAAK 211 (412)
Q Consensus 206 v~~~~~ 211 (412)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 324
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=7.1e-16 Score=122.54 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=72.3
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCC---cceEEEeecC---CCCEEEEEecCHHHHHHHHHHhCCCccCCcee
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGP---LEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPI 115 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~---i~~v~~~~~~---~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l 115 (412)
.+..+.++|||+|||+++|+++|+++|+.||. |.+|++++++ ++|||||+|.+.++|.+|++ +|+..|.|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34566789999999999999999999999999 8999999875 36799999999999999997 99999999999
Q ss_pred EEEeccc
Q 015149 116 KVNWAYA 122 (412)
Q Consensus 116 ~v~~~~~ 122 (412)
+|.++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9998753
No 325
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=1.4e-15 Score=112.09 Aligned_cols=74 Identities=20% Similarity=0.345 Sum_probs=62.9
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-ccEEEEEeCCHHHHHHHHHHcCCCe--eCCeeeEEEecC
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARI--LCGKPIKCSWGS 326 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-kg~afV~f~~~~~A~~A~~~l~g~~--l~g~~l~V~~a~ 326 (412)
.+..+|||+|||+++|+++|+++|++| |.|.+|+++++ ||||||+|.+.++|.+ |+|.. +.|+.|.|.+++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~--G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQY--GEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 445899999999999999999999999 99999999986 9999999999999883 45664 569999999998
Q ss_pred CCC
Q 015149 327 KPT 329 (412)
Q Consensus 327 ~~~ 329 (412)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 326
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=8.1e-16 Score=120.20 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=71.7
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCC
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 329 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~ 329 (412)
.+.++|||+|+ ++++++|+++|+.| |.|.+|.+.+.+|||||+|.+.++|.+|++.|||..|+|+.|+|.|++++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~--G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTT--CCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHcc--CCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 34589999996 69999999999999 999999999999999999999999999999999999999999999998764
Q ss_pred C
Q 015149 330 P 330 (412)
Q Consensus 330 ~ 330 (412)
.
T Consensus 113 ~ 113 (121)
T 2bz2_A 113 M 113 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 327
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2.2e-17 Score=128.70 Aligned_cols=86 Identities=26% Similarity=0.375 Sum_probs=80.1
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeee--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD--------ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~--------~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~ 200 (412)
..+.++|||+|||+++++++|+++|+.||.|.. ++++.++.+++++|||||+|.+.++|.+|+..|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456678999999999999999999999999998 899999889999999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q 015149 201 NRQIRCNWAAKGAT 214 (412)
Q Consensus 201 g~~l~v~~~~~~~~ 214 (412)
|+.|.|.++.++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999976643
No 328
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.62 E-value=3.4e-16 Score=118.92 Aligned_cols=81 Identities=23% Similarity=0.440 Sum_probs=75.7
Q ss_pred CCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 015149 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (412)
Q Consensus 130 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 209 (412)
...++|||+|||+++++++|+++|+.||.|.++++..++ +|+++|||||+|.+.++|.+|+. ++..+.|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345789999999999999999999999999999999997 99999999999999999999999 999999999999998
Q ss_pred cCCC
Q 015149 210 AKGA 213 (412)
Q Consensus 210 ~~~~ 213 (412)
..+.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7653
No 329
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=2.6e-15 Score=117.33 Aligned_cols=80 Identities=26% Similarity=0.306 Sum_probs=72.0
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecc
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~ 121 (412)
....+.++|||+|| ++++++|+++|++||+|.+|.+. +.+|||||+|.+.++|.+|++.|++..+.|+.|+|.|+.
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 34466889999996 69999999999999999999985 577899999999999999999999999999999999998
Q ss_pred cCCC
Q 015149 122 ASSQ 125 (412)
Q Consensus 122 ~~~~ 125 (412)
++..
T Consensus 110 ~~~~ 113 (121)
T 2bz2_A 110 KQPM 113 (121)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7654
No 330
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=5.8e-16 Score=118.59 Aligned_cols=80 Identities=8% Similarity=-0.002 Sum_probs=72.5
Q ss_pred CCCCCCCEEEEcCCCccCCHHHHHHHhhccCC---cceEEEeecC---CCCEEEEEecCHHHHHHHHHHhCCCccCCcee
Q 015149 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGP---LEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPI 115 (412)
Q Consensus 42 ~~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~---i~~v~~~~~~---~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l 115 (412)
....+.++|||+|||+++|+++|+++|+.||. |.+|.++.++ .+|||||+|.+.++|.+|+. +++..+.|+.|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 34567889999999999999999999999988 8999998764 47899999999999999997 99999999999
Q ss_pred EEEeccc
Q 015149 116 KVNWAYA 122 (412)
Q Consensus 116 ~v~~~~~ 122 (412)
+|.++.+
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9998864
No 331
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=1e-15 Score=132.63 Aligned_cols=80 Identities=23% Similarity=0.451 Sum_probs=72.4
Q ss_pred CCCcceEEEecCCCCC---------CHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCee----
Q 015149 249 NPQYTTVYVGNLSSEV---------TSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARIL---- 315 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~---------t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l---- 315 (412)
....++|||+||+..+ ++++|+++|++| |.|++|+++.+||||||+|.+.++|..|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 3456899999999998 799999999999 9999999999999999999999999999999999999
Q ss_pred --------CCeeeEEEecCCCCC
Q 015149 316 --------CGKPIKCSWGSKPTP 330 (412)
Q Consensus 316 --------~g~~l~V~~a~~~~~ 330 (412)
.|+.|.|.||++...
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp STTGGGGGGSCCCEEEECC----
T ss_pred cccccccCCCCEEEEEEccCCCC
Confidence 899999999987643
No 332
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=1.6e-15 Score=126.90 Aligned_cols=83 Identities=29% Similarity=0.373 Sum_probs=78.1
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 208 (412)
....++|||+|||+.+++++|+++|+.||.|.+|.+..++ ++.++|||||+|.+.++|..|++.+++..|.|+.|.|+|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ccCC
Q 015149 209 AAKG 212 (412)
Q Consensus 209 ~~~~ 212 (412)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8654
No 333
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.61 E-value=6.7e-16 Score=120.66 Aligned_cols=81 Identities=23% Similarity=0.273 Sum_probs=72.8
Q ss_pred CCCCCceEEECCCCccccHHHHHHHhhcCCCee--eEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCS--DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 128 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~--~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
.....++|||+|||+++++++|+++|+.| .|. +|+|+.|+. |+++|||||+|.+.++|.+|++ +++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34456789999999999999999999999 676 899999976 9999999999999999999999 577999999999
Q ss_pred EEEccC
Q 015149 206 CNWAAK 211 (412)
Q Consensus 206 v~~~~~ 211 (412)
|.++..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 334
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=119.93 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=69.4
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC----CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~----~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
...+.++|||+|||+++++++|+++|+.||.|.++.++.+. .+|||||+|.+.++|.+||. +|+..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999999885554432 36899999999999999997 99999999999999
Q ss_pred eccc
Q 015149 119 WAYA 122 (412)
Q Consensus 119 ~~~~ 122 (412)
++..
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9864
No 335
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=1.3e-15 Score=118.11 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=66.8
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCce-----eEEEe
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP-----IKVNW 119 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~-----l~v~~ 119 (412)
...++|||+|||+++++++|+++|++||+|..|.++.+ |||||+|.+.++|.+||+.||+..|.|+. |+|..
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 45678999999999999999999999999999999776 89999999999999999999999999988 77777
Q ss_pred cccCC
Q 015149 120 AYASS 124 (412)
Q Consensus 120 ~~~~~ 124 (412)
..+..
T Consensus 91 ~~~~~ 95 (115)
T 3beg_B 91 DGPRS 95 (115)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 66543
No 336
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=115.68 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC---CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~---~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
..+.++|||+|||++++++||+++|+.| .|.+|.|+.++ .+|||||+|.+.++|.+|| .+|+..|.|+.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3445789999999999999999999999 89999998764 4789999999999999999 79999999999999877
Q ss_pred cc
Q 015149 121 YA 122 (412)
Q Consensus 121 ~~ 122 (412)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 337
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=2e-15 Score=111.26 Aligned_cols=76 Identities=24% Similarity=0.339 Sum_probs=62.7
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCc--cCCceeEEEecc
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRH--IFGQPIKVNWAY 121 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~--~~g~~l~v~~~~ 121 (412)
..+..+|||+|||+++|+++|+++|++||+|.+|.++++ ++|||||+|.+.++|.+ +++.. +.|+.|.|.++.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 455788999999999999999999999999999999875 78999999999999983 45554 459999999987
Q ss_pred cCC
Q 015149 122 ASS 124 (412)
Q Consensus 122 ~~~ 124 (412)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 338
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=6.1e-17 Score=126.17 Aligned_cols=80 Identities=26% Similarity=0.436 Sum_probs=73.0
Q ss_pred CCcceEEEecCCCCCCHHHHHHHHhhcCcccEEE--------EEeecc------ccEEEEEeCCHHHHHHHHHHcCCCee
Q 015149 250 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED--------VRVQRD------KGFGFVRYSTHPEAALAIQMGNARIL 315 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~--------v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l 315 (412)
.+.++|||+|||..+++++|+++|+.| |.|.+ |++..+ +|||||+|.+.++|.+|++.|||..|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQI--GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 345899999999999999999999999 99998 888765 68999999999999999999999999
Q ss_pred CCeeeEEEecCCCCCC
Q 015149 316 CGKPIKCSWGSKPTPP 331 (412)
Q Consensus 316 ~g~~l~V~~a~~~~~~ 331 (412)
.|+.|+|.|++++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999876543
No 339
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=111.55 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=65.4
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCCCC
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 330 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~~~ 330 (412)
.++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|... +..+.|+.|+|.+++++..
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQY--GDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTT--SCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 4899999999999999999999999 99999999877 99999999999999754321 3356999999999987654
No 340
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.60 E-value=1.4e-15 Score=132.77 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=69.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcc--cEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEE
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVG--TIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 322 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G--~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V 322 (412)
..++|||+||++++|+++|+++|+.| | .|++|+|++| ||||||+|.+.++|.+||+.|||..|.|+.|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~--G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL--GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT--TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH--CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEE
Confidence 34789999999999999999999999 9 9999999876 689999999999999999999999999999999
Q ss_pred EecCC
Q 015149 323 SWGSK 327 (412)
Q Consensus 323 ~~a~~ 327 (412)
.|+++
T Consensus 145 ~~a~~ 149 (229)
T 3q2s_C 145 TPVNK 149 (229)
T ss_dssp EECCH
T ss_pred EECCC
Confidence 99864
No 341
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=1.8e-15 Score=111.29 Aligned_cols=73 Identities=22% Similarity=0.498 Sum_probs=67.3
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhcc----C-------CcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCC
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSST----G-------PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~----G-------~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g 112 (412)
..+.++|||+|||+++++++|+++|++| | +|.++.+.++ +|||||+|.+.++|.+|+ .||+..+.|
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 3567899999999999999999999999 8 8998888654 789999999999999999 999999999
Q ss_pred ceeEEEe
Q 015149 113 QPIKVNW 119 (412)
Q Consensus 113 ~~l~v~~ 119 (412)
+.|+|+.
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999984
No 342
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=121.91 Aligned_cols=80 Identities=28% Similarity=0.440 Sum_probs=69.8
Q ss_pred CCCcceEEEecCCCCCCHHHHHHHHhhcCcccEEE--------EEee---ccccEEEEEeCCHHHHHHHHHHcCCCeeCC
Q 015149 249 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED--------VRVQ---RDKGFGFVRYSTHPEAALAIQMGNARILCG 317 (412)
Q Consensus 249 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~--------v~i~---~~kg~afV~f~~~~~A~~A~~~l~g~~l~g 317 (412)
..+.++|||+|||..+|+++|+++|+.| |.|.. +++. +.+|||||+|.+.++|.+|+..|||..|.|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRY--VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGG--CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3455899999999999999999999999 87765 3333 348999999999999999999999999999
Q ss_pred eeeEEEecCCCCC
Q 015149 318 KPIKCSWGSKPTP 330 (412)
Q Consensus 318 ~~l~V~~a~~~~~ 330 (412)
+.|+|.|+++..+
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999986543
No 343
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.60 E-value=6.7e-16 Score=110.14 Aligned_cols=69 Identities=16% Similarity=0.364 Sum_probs=64.8
Q ss_pred eEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 254 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 254 ~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
+|||+|||.++++++|+++|+.| |.|.++.+.++ +|+|||+|.+.++|.+|++. ++..++|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF--GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH--SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 58999999999999999999999 99999999765 78999999999999999985 999999999999875
No 344
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.59 E-value=4.6e-15 Score=124.02 Aligned_cols=82 Identities=21% Similarity=0.260 Sum_probs=74.9
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC---CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEe
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~---~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~ 119 (412)
...+.++|||+|||+++++++|+++|+.||+|.+|.+..++ .+|||||+|.+.++|.+|++.|++..|.|+.|+|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999998864 478999999999999999999999999999999999
Q ss_pred cccCC
Q 015149 120 AYASS 124 (412)
Q Consensus 120 ~~~~~ 124 (412)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 87554
No 345
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-15 Score=112.00 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEecccCC
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~~~~~ 124 (412)
.++++|||+|||+++++++|+++|++||+|.+|.+.++ ++|||||+|.+.++|.+++. ....+.|+.|.|.++.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCC
Confidence 45789999999999999999999999999999998875 78999999999999976432 1344589999999998765
Q ss_pred CCc
Q 015149 125 QRE 127 (412)
Q Consensus 125 ~~~ 127 (412)
...
T Consensus 80 ~~~ 82 (88)
T 1wf0_A 80 NSN 82 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 346
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=5.2e-15 Score=119.74 Aligned_cols=83 Identities=23% Similarity=0.384 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCCcceE--------EEee-cCCCCEEEEEecCHHHHHHHHHHhCCCccCCce
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGC--------KLIK-KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v--------~~~~-~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~ 114 (412)
..++++|||+|||+++|+++|+++|+.||.|..| .+.. .+.+|||||+|.+.++|.+|+..||+..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4567899999999999999999999999998874 3332 356899999999999999999999999999999
Q ss_pred eEEEecccCCCC
Q 015149 115 IKVNWAYASSQR 126 (412)
Q Consensus 115 l~v~~~~~~~~~ 126 (412)
|.|.++.+...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999876543
No 347
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.58 E-value=1.9e-15 Score=114.81 Aligned_cols=75 Identities=21% Similarity=0.468 Sum_probs=69.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEec
Q 015149 251 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 325 (412)
Q Consensus 251 ~~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a 325 (412)
..++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++ +|..|+|+.|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARY--GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 45899999999999999999999999 99999999875 6999999999999999998 999999999999998
Q ss_pred CCCC
Q 015149 326 SKPT 329 (412)
Q Consensus 326 ~~~~ 329 (412)
.+..
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7654
No 348
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=1e-14 Score=123.86 Aligned_cols=117 Identities=12% Similarity=0.073 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHh--CCCccCCceeEEEecccCCCCc------CCCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEe
Q 015149 94 DRRSAALAIVTL--NGRHIFGQPIKVNWAYASSQRE------DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVM 165 (412)
Q Consensus 94 ~~~~A~~Al~~l--~~~~~~g~~l~v~~~~~~~~~~------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~ 165 (412)
+.+.+..|+... ....+.+....|+......... .....++|||+|||+++++++|+++|+.||.|.++++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 677888888766 4555666666676653221111 11235789999999999999999999999999999999
Q ss_pred ecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 015149 166 WDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (412)
Q Consensus 166 ~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 212 (412)
++. ++.++|||||+|.+.++|..|+..+ +..+.|+.|.|.+....
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 885 5899999999999999999999855 56999999999997654
No 349
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.57 E-value=1.3e-15 Score=121.43 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=70.2
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC---CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEe
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~---~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~ 119 (412)
.....++|||+|||+++|++||+++|++|| |.+|.|+.++ ++|||||+|.+.++|.+|| .+|+..|.|+.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 445678899999999999999999999999 6799998764 4789999999999999999 8999999999999998
Q ss_pred cccCC
Q 015149 120 AYASS 124 (412)
Q Consensus 120 ~~~~~ 124 (412)
+....
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87654
No 350
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.8e-15 Score=116.88 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=67.7
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCc----ceEEEeecC---CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEE
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPL----EGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i----~~v~~~~~~---~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v 117 (412)
.+.++|||+|||+++|++||+++|++||+| .+|.|+.++ .+|||||+|.+.++|.+||+. ++..|.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 457889999999999999999999999975 689998764 368999999999999999964 999999999998
Q ss_pred Eecc
Q 015149 118 NWAY 121 (412)
Q Consensus 118 ~~~~ 121 (412)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 351
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.9e-14 Score=109.29 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=72.6
Q ss_pred CCCCCCCCEEEEcCCCccC-----------CHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCc
Q 015149 41 RFDASTCRSVYVGNIHPQV-----------TNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRH 109 (412)
Q Consensus 41 ~~~~~~~~tl~V~nLp~~~-----------t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~ 109 (412)
...+.++++|+|.||.... ++++|+++|++||+|.+|.|.....+|||||+|.+.++|.+|+..|||..
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3456778999999994433 26899999999999999977544568999999999999999999999999
Q ss_pred cCCceeEEEecccCCC
Q 015149 110 IFGQPIKVNWAYASSQ 125 (412)
Q Consensus 110 ~~g~~l~v~~~~~~~~ 125 (412)
|.|+.|+|.++.++..
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999876543
No 352
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.56 E-value=3.8e-15 Score=116.38 Aligned_cols=78 Identities=18% Similarity=0.120 Sum_probs=68.6
Q ss_pred CCCCCCEEEEcCCCccCCHHHHHHHhhccCCcc--eEEEeecC---CCCEEEEEecCHHHHHHHHHHhCCCccCCceeEE
Q 015149 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLE--GCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~--~v~~~~~~---~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v 117 (412)
+..+.++|||+|||+++|+++|+++|+.| .|. +|+|+.++ .+|||||+|.+.++|.+|++ +++..|.|+.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 44567889999999999999999999999 576 88888764 47899999999999999996 5789999999999
Q ss_pred Eeccc
Q 015149 118 NWAYA 122 (412)
Q Consensus 118 ~~~~~ 122 (412)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 353
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=2.3e-14 Score=108.57 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=72.3
Q ss_pred CCCceEEECCCCc-----cccHHHHHHHhhcCCCeeeEEEeecCCC-CCcccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 015149 130 SGHFNVFVGDLSP-----EVTDATLFACFSVFPTCSDARVMWDQKT-GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203 (412)
Q Consensus 130 ~~~~~l~v~nlp~-----~~~~~~l~~~f~~~G~v~~~~~~~d~~~-~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~ 203 (412)
.++++|+|.||.. +-.+++|++.|++||.|.++.+..++.+ ++++|+|||+|.+.++|.+|++.|||..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567899999963 2368999999999999999999988654 689999999999999999999999999999999
Q ss_pred EEEEEccC
Q 015149 204 IRCNWAAK 211 (412)
Q Consensus 204 l~v~~~~~ 211 (412)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999853
No 354
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=2e-14 Score=108.91 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=67.4
Q ss_pred CCcceEEEecCCC-----CCCHHHHHHHHhhcCcccEEEEEeecc-------ccEEEEEeCCHHHHHHHHHHcCCCeeCC
Q 015149 250 PQYTTVYVGNLSS-----EVTSVDLHRHFHALCVGTIEDVRVQRD-------KGFGFVRYSTHPEAALAIQMGNARILCG 317 (412)
Q Consensus 250 ~~~~~l~V~nL~~-----~~t~~~L~~~F~~~~~G~v~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l~g~~l~g 317 (412)
.++++|+|.||.. +-++++|+++|++| |.|.+|.+.++ +|+|||+|.+.++|.+|++.|||+.|+|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 3458999999963 23789999999999 99999999864 6999999999999999999999999999
Q ss_pred eeeEEEecCC
Q 015149 318 KPIKCSWGSK 327 (412)
Q Consensus 318 ~~l~V~~a~~ 327 (412)
|.|+|.|+..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999853
No 355
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=112.12 Aligned_cols=78 Identities=22% Similarity=0.372 Sum_probs=68.2
Q ss_pred CCCCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCC---CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 015149 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKT---GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (412)
Q Consensus 129 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~---~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 205 (412)
....++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|.+|++.++ .++|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34567899999999999999999999999999 888888777 7999999999999999999999883 46777777
Q ss_pred EEEc
Q 015149 206 CNWA 209 (412)
Q Consensus 206 v~~~ 209 (412)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6654
No 356
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=9.2e-14 Score=117.89 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=67.8
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
.++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|+..+ +..|+|+.|+|.|++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTS--CCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcC--CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 3789999999999999999999999 99999999874 799999999999999999865 459999999999987
Q ss_pred CC
Q 015149 327 KP 328 (412)
Q Consensus 327 ~~ 328 (412)
.-
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 54
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=3.3e-14 Score=123.22 Aligned_cols=80 Identities=21% Similarity=0.424 Sum_probs=71.5
Q ss_pred CCCCCCEEEEcCCCccC---------CHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCcc---
Q 015149 43 DASTCRSVYVGNIHPQV---------TNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHI--- 110 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~~---------t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~--- 110 (412)
...++++|||+||+.++ ++++|+++|++||+|.+|+++. ++|||||+|.+.++|..|++.|++..+
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 35678999999999998 7999999999999999999986 468999999999999999999999999
Q ss_pred ---------CCceeEEEecccCC
Q 015149 111 ---------FGQPIKVNWAYASS 124 (412)
Q Consensus 111 ---------~g~~l~v~~~~~~~ 124 (412)
.|+.|.|+|++...
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccCCCCEEEEEEccCCC
Confidence 89999999998654
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.5e-13 Score=105.98 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=68.2
Q ss_pred CCcceEEEecCCCCCC-----------HHHHHHHHhhcCcccEEEEEeec--cccEEEEEeCCHHHHHHHHHHcCCCeeC
Q 015149 250 PQYTTVYVGNLSSEVT-----------SVDLHRHFHALCVGTIEDVRVQR--DKGFGFVRYSTHPEAALAIQMGNARILC 316 (412)
Q Consensus 250 ~~~~~l~V~nL~~~~t-----------~~~L~~~F~~~~~G~v~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~l~ 316 (412)
.+.++|+|.||....+ +++|+++|++| |.|.+|.|.. .+|||||+|.+.++|.+|++.|||..|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4568999999944332 58999999999 9999997742 2799999999999999999999999999
Q ss_pred CeeeEEEecCCCCC
Q 015149 317 GKPIKCSWGSKPTP 330 (412)
Q Consensus 317 g~~l~V~~a~~~~~ 330 (412)
|+.|+|.|+.+...
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999977543
No 359
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=5.3e-14 Score=108.93 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=62.1
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeec-------CCCCEEEEEecCHHHHHHHHHHhCCCccCCceeE
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK-------DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~-------~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~ 116 (412)
....++|||+|||+++++++|+++|++||+|. +.++.+ +.+|||||+|.+.++|.+|++.++ .+.|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 45678899999999999999999999999999 777654 347899999999999999999884 35666666
Q ss_pred EEec
Q 015149 117 VNWA 120 (412)
Q Consensus 117 v~~~ 120 (412)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6543
No 360
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.2e-14 Score=108.56 Aligned_cols=72 Identities=13% Similarity=0.240 Sum_probs=64.8
Q ss_pred ceEEEecC----CCCCCHHHHHHHHhhcCcccEEEEEeecc------ccEEEEEeCC----HHH----HHHHHH--HcCC
Q 015149 253 TTVYVGNL----SSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYST----HPE----AALAIQ--MGNA 312 (412)
Q Consensus 253 ~~l~V~nL----~~~~t~~~L~~~F~~~~~G~v~~v~i~~~------kg~afV~f~~----~~~----A~~A~~--~l~g 312 (412)
..|||+|| |+.+++++|+++|+.| |+|.+|.++.| +|||||+|.+ +++ |.+|+. .|||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f--GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY--GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT--SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 68999999 9999999999999999 99999999977 7999999996 433 889988 7899
Q ss_pred CeeCCeeeEEEecC
Q 015149 313 RILCGKPIKCSWGS 326 (412)
Q Consensus 313 ~~l~g~~l~V~~a~ 326 (412)
..|+|+.|+|.+.+
T Consensus 81 ~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 81 CFIMGFKFEVILNK 94 (136)
T ss_dssp EEETTEEEEEEECC
T ss_pred CeecCcEEEEEECc
Confidence 99999999999865
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=1.1e-13 Score=104.82 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=66.2
Q ss_pred CCcceEEEecC--CCCCC--------HHHHHHHHhhcCcccEEEEEeecc--------ccEEEEEeCCHHHHHHHHHHcC
Q 015149 250 PQYTTVYVGNL--SSEVT--------SVDLHRHFHALCVGTIEDVRVQRD--------KGFGFVRYSTHPEAALAIQMGN 311 (412)
Q Consensus 250 ~~~~~l~V~nL--~~~~t--------~~~L~~~F~~~~~G~v~~v~i~~~--------kg~afV~f~~~~~A~~A~~~l~ 311 (412)
.++++|.|.|+ +.++. +++|++.|++| |.|.+|.|+++ +|++||+|.+.++|.+|++.||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 45689999998 33443 37999999999 99999999865 6999999999999999999999
Q ss_pred CCeeCCeeeEEEecC
Q 015149 312 ARILCGKPIKCSWGS 326 (412)
Q Consensus 312 g~~l~g~~l~V~~a~ 326 (412)
|+.|+||.|+|.|..
T Consensus 81 G~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 81 GRKFANRVVVTKYCD 95 (105)
T ss_dssp TCEETTEECEEEEEC
T ss_pred CCEeCCCEEEEEEeC
Confidence 999999999999864
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1e-12 Score=98.16 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=63.3
Q ss_pred ceEEEecCC-------CCCCHHHHHHHHhhcCcccEEEEEee-ccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEe
Q 015149 253 TTVYVGNLS-------SEVTSVDLHRHFHALCVGTIEDVRVQ-RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 324 (412)
Q Consensus 253 ~~l~V~nL~-------~~~t~~~L~~~F~~~~~G~v~~v~i~-~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~ 324 (412)
++|.|.-.. ..+++++|+++|++| |.|.+|.++ +.+|||||+|.+.++|.+|++.+++ +.|++|+|.|
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~--G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~ 86 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKY--GEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISW 86 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTT--SCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEEC
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhc--CCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEE
Confidence 566666554 468999999999999 999999998 4589999999999999999998555 6899999999
Q ss_pred cCCCCC
Q 015149 325 GSKPTP 330 (412)
Q Consensus 325 a~~~~~ 330 (412)
++++..
T Consensus 87 a~~~~~ 92 (100)
T 2d9o_A 87 LEGQPQ 92 (100)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 987653
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=2.7e-13 Score=102.77 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=70.3
Q ss_pred CCCceEEECCC--Ccccc--------HHHHHHHhhcCCCeeeEEEeecCCC--CCcccEEEEEecCHHHHHHHHHHhCCc
Q 015149 130 SGHFNVFVGDL--SPEVT--------DATLFACFSVFPTCSDARVMWDQKT--GRSRGFGFVSFRNQEDAQSAINDLNGK 197 (412)
Q Consensus 130 ~~~~~l~v~nl--p~~~~--------~~~l~~~f~~~G~v~~~~~~~d~~~--~~~~g~afV~f~~~~~A~~ai~~l~~~ 197 (412)
.+++.|.|.|+ |..+. ++||++.|++||.|.+++|..++.+ ++++|++||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678888888 33333 4699999999999999999988654 468999999999999999999999999
Q ss_pred eeCCeEEEEEEccC
Q 015149 198 WLGNRQIRCNWAAK 211 (412)
Q Consensus 198 ~~~g~~l~v~~~~~ 211 (412)
.++||.|.|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998743
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=3.4e-13 Score=104.16 Aligned_cols=80 Identities=14% Similarity=0.260 Sum_probs=69.5
Q ss_pred CCceEEECCCCc--cc---cHHHHHHHhhcCCCeeeEEEeecCC----CCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 015149 131 GHFNVFVGDLSP--EV---TDATLFACFSVFPTCSDARVMWDQK----TGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (412)
Q Consensus 131 ~~~~l~v~nlp~--~~---~~~~l~~~f~~~G~v~~~~~~~d~~----~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g 201 (412)
++++|+|.|+-. ++ .++||++.|++||.|.+++|..++. +++++|++||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 456788888832 22 3689999999999999999998864 45788999999999999999999999999999
Q ss_pred eEEEEEEcc
Q 015149 202 RQIRCNWAA 210 (412)
Q Consensus 202 ~~l~v~~~~ 210 (412)
|.|.|.+..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999874
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.45 E-value=3.1e-13 Score=123.48 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=70.5
Q ss_pred CCCCCCcceEEEec--CCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCee---CCe--
Q 015149 246 PENNPQYTTVYVGN--LSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARIL---CGK-- 318 (412)
Q Consensus 246 ~~~~~~~~~l~V~n--L~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l---~g~-- 318 (412)
.....++++|||+| |+..+|+++|+++|++| |.|++|.+.++||||||+|.+.++|.+|++.|||.++ .|+
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~--G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTT--SCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhc--CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 33456779999999 57899999999999999 9999999999999999999999999999999999987 344
Q ss_pred eeEEEecC
Q 015149 319 PIKCSWGS 326 (412)
Q Consensus 319 ~l~V~~a~ 326 (412)
.|.|.|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 68889985
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.43 E-value=1.4e-13 Score=104.23 Aligned_cols=72 Identities=24% Similarity=0.436 Sum_probs=64.2
Q ss_pred ECCCCccccHHHHHHHh------------hcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 015149 137 VGDLSPEVTDATLFACF------------SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (412)
Q Consensus 137 v~nlp~~~~~~~l~~~f------------~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 204 (412)
+.||+..+++++|++.| ++||.|.++++..++ +++++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888887777666 999999999999875 47899999999999999999999999999999999
Q ss_pred EEEEc
Q 015149 205 RCNWA 209 (412)
Q Consensus 205 ~v~~~ 209 (412)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.41 E-value=7.9e-13 Score=102.07 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=65.5
Q ss_pred CcceEEEecCCC--CC---CHHHHHHHHhhcCcccEEEEEeecc----------ccEEEEEeCCHHHHHHHHHHcCCCee
Q 015149 251 QYTTVYVGNLSS--EV---TSVDLHRHFHALCVGTIEDVRVQRD----------KGFGFVRYSTHPEAALAIQMGNARIL 315 (412)
Q Consensus 251 ~~~~l~V~nL~~--~~---t~~~L~~~F~~~~~G~v~~v~i~~~----------kg~afV~f~~~~~A~~A~~~l~g~~l 315 (412)
++++|+|.|+-. ++ .++||++.|++| |.|.+|.|+++ +|++||+|.+.++|.+|++.|||+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 458999999943 22 368999999999 99999999875 38999999999999999999999999
Q ss_pred CCeeeEEEecC
Q 015149 316 CGKPIKCSWGS 326 (412)
Q Consensus 316 ~g~~l~V~~a~ 326 (412)
+||.|+|.|..
T Consensus 97 ~GR~i~v~~~~ 107 (118)
T 3ue2_A 97 AGRKVVAEVYD 107 (118)
T ss_dssp TTEECEEEEEC
T ss_pred CCcEEEEEEcC
Confidence 99999999864
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.39 E-value=1.1e-12 Score=100.61 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=65.8
Q ss_pred CcceEEEecCCCCC----------CHHHHHHHHhhcCcccEEEEEeecc--ccEEEEEeCCHHHHHHHHHHcCCCeeCCe
Q 015149 251 QYTTVYVGNLSSEV----------TSVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGNARILCGK 318 (412)
Q Consensus 251 ~~~~l~V~nL~~~~----------t~~~L~~~F~~~~~G~v~~v~i~~~--kg~afV~f~~~~~A~~A~~~l~g~~l~g~ 318 (412)
++++|.|.|+-..- .++||++.|++| |.|.+|.+.++ +|++||+|.+.++|.+|++.|||+.|+||
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf--G~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH--GGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT--TCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc--CCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45789999984322 246889999999 99999999887 79999999999999999999999999999
Q ss_pred eeEEEecCC
Q 015149 319 PIKCSWGSK 327 (412)
Q Consensus 319 ~l~V~~a~~ 327 (412)
.|+|.|...
T Consensus 84 ~i~v~~~~~ 92 (114)
T 3s6e_A 84 MITAAYVPL 92 (114)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEEcH
Confidence 999999853
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.39 E-value=2.1e-13 Score=103.23 Aligned_cols=67 Identities=25% Similarity=0.474 Sum_probs=58.6
Q ss_pred EecCCCCCCHHHHHHHH------------hhcCcccEEEEEeecc-----ccEEEEEeCCHHHHHHHHHHcCCCeeCCee
Q 015149 257 VGNLSSEVTSVDLHRHF------------HALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKP 319 (412)
Q Consensus 257 V~nL~~~~t~~~L~~~F------------~~~~~G~v~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g~~ 319 (412)
+.||+..+++++|++.| ++| |.|.+|.+.++ +|+|||+|.+.++|.+|++.|||+.|+||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~--G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY--GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC--CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 45666667777666655 999 99999999876 799999999999999999999999999999
Q ss_pred eEEEec
Q 015149 320 IKCSWG 325 (412)
Q Consensus 320 l~V~~a 325 (412)
|+|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=6.4e-12 Score=93.81 Aligned_cols=77 Identities=17% Similarity=0.272 Sum_probs=64.8
Q ss_pred CCCEEEEcCCC-------ccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 46 TCRSVYVGNIH-------PQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 46 ~~~tl~V~nLp-------~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
..++|.|.-.+ .++++++|+++|++||+|.+|.++ .+.+|||||+|.+.++|..|++.+++ +.|++|+|.
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~ 85 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKIS 85 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEE
Confidence 35567777655 458999999999999999999987 46789999999999999999987544 679999999
Q ss_pred ecccCCC
Q 015149 119 WAYASSQ 125 (412)
Q Consensus 119 ~~~~~~~ 125 (412)
|+.++..
T Consensus 86 ~a~~~~~ 92 (100)
T 2d9o_A 86 WLEGQPQ 92 (100)
T ss_dssp CSSCCCC
T ss_pred EccCCCC
Confidence 9876653
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=3.1e-12 Score=98.03 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=67.6
Q ss_pred CCCCEEEEcCCCccC----------CHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCce
Q 015149 45 STCRSVYVGNIHPQV----------TNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~----------t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~ 114 (412)
.+++.|.|.|+=... -++||++.|++||.|.+|.+.++..+|++||+|.+.++|.+|++.|||..|.||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 457789999874422 2468899999999999999988777899999999999999999999999999999
Q ss_pred eEEEecc
Q 015149 115 IKVNWAY 121 (412)
Q Consensus 115 l~v~~~~ 121 (412)
|+|.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999985
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-11 Score=88.32 Aligned_cols=77 Identities=22% Similarity=0.228 Sum_probs=66.2
Q ss_pred CCCCcceEEEecCCC----CCCH----HHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCee
Q 015149 248 NNPQYTTVYVGNLSS----EVTS----VDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKP 319 (412)
Q Consensus 248 ~~~~~~~l~V~nL~~----~~t~----~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~ 319 (412)
.+++..||+|.-.+. ..-. .+|.+.|..| |.|..+++..++ +||+|.+.++|.+|++ |||..++||.
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF--GEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT--CCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC--CCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 456678999988762 3333 6789999999 999999999986 8999999999999998 9999999999
Q ss_pred eEEEecCCCC
Q 015149 320 IKCSWGSKPT 329 (412)
Q Consensus 320 l~V~~a~~~~ 329 (412)
|+|.++++.-
T Consensus 78 LkV~lkt~dW 87 (91)
T 2dnr_A 78 ITIALKSPSG 87 (91)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeCCCCc
Confidence 9999987653
No 373
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.28 E-value=6.6e-12 Score=114.75 Aligned_cols=77 Identities=25% Similarity=0.384 Sum_probs=66.8
Q ss_pred CCCCCCEEEEcC--CCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccC---Cc--ee
Q 015149 43 DASTCRSVYVGN--IHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIF---GQ--PI 115 (412)
Q Consensus 43 ~~~~~~tl~V~n--Lp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~---g~--~l 115 (412)
...++++|||+| |++.+|+++|+++|++||+|.+|.+.. ++|||||+|.+.++|.+|++.|||..+. |+ .|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 456688999999 588999999999999999999887754 6789999999999999999999998873 45 67
Q ss_pred EEEecc
Q 015149 116 KVNWAY 121 (412)
Q Consensus 116 ~v~~~~ 121 (412)
.|.|..
T Consensus 92 y~~~~~ 97 (345)
T 3tht_A 92 YLNFVE 97 (345)
T ss_dssp EEEECS
T ss_pred EEEEee
Confidence 888774
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=8e-11 Score=90.07 Aligned_cols=79 Identities=16% Similarity=0.083 Sum_probs=70.5
Q ss_pred CCCCCCCcceEEEecCCCC-CCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCC-HHHHHHHHHHcC--CCeeCCeee
Q 015149 245 APENNPQYTTVYVGNLSSE-VTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYST-HPEAALAIQMGN--ARILCGKPI 320 (412)
Q Consensus 245 ~~~~~~~~~~l~V~nL~~~-~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~-~~~A~~A~~~l~--g~~l~g~~l 320 (412)
.....++...|+|+||+.. +++++|+++|+.| |.|.+|.+.++...|||+|.+ .++|..|+..|| |..|+|..+
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~--G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNH--GEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSS--CCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhc--CCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 3445566789999999999 9999999999999 999999999999999999999 899999999995 778999988
Q ss_pred EEEec
Q 015149 321 KCSWG 325 (412)
Q Consensus 321 ~V~~a 325 (412)
++...
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88754
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=6.7e-11 Score=84.84 Aligned_cols=76 Identities=22% Similarity=0.232 Sum_probs=65.5
Q ss_pred CCCCCCcceEEEecCCCC-----CCH----HHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeC
Q 015149 246 PENNPQYTTVYVGNLSSE-----VTS----VDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILC 316 (412)
Q Consensus 246 ~~~~~~~~~l~V~nL~~~-----~t~----~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~ 316 (412)
...+|+..||+|.-++.. +-. .+|.+.|..| |.|..+++..++ +||+|.+.++|.+|++ |||..++
T Consensus 9 ~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY--GTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH--SCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEET
T ss_pred eecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC--CCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeC
Confidence 345677789999988742 322 5688999999 999999999997 9999999999999998 9999999
Q ss_pred CeeeEEEecC
Q 015149 317 GKPIKCSWGS 326 (412)
Q Consensus 317 g~~l~V~~a~ 326 (412)
||.|+|.+..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998854
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=8.3e-10 Score=78.83 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=62.3
Q ss_pred CCEEEEcCCCc----cCCH----HHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 47 CRSVYVGNIHP----QVTN----ALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 47 ~~tl~V~nLp~----~~t~----~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
--||+|.-++. ++-. .+|.+.|++||+|..++++.++ +||+|.+.++|.+|++ |||..+.||.|+|+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 45788887762 3333 6789999999999999998865 9999999999999996 99999999999999
Q ss_pred ecccCC
Q 015149 119 WAYASS 124 (412)
Q Consensus 119 ~~~~~~ 124 (412)
..++.-
T Consensus 82 lkt~dW 87 (91)
T 2dnr_A 82 LKSPSG 87 (91)
T ss_dssp ECCCSS
T ss_pred eCCCCc
Confidence 987654
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=1.6e-09 Score=82.88 Aligned_cols=77 Identities=10% Similarity=0.083 Sum_probs=67.4
Q ss_pred CCCCCCEEEEcCCCcc-CCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecC-HHHHHHHHHHhC--CCccCCceeEEE
Q 015149 43 DASTCRSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFD-RRSAALAIVTLN--GRHIFGQPIKVN 118 (412)
Q Consensus 43 ~~~~~~tl~V~nLp~~-~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~-~~~A~~Al~~l~--~~~~~g~~l~v~ 118 (412)
.-...+.|+|+||+++ ++.++|+++|+.||+|..|.+.++.. .|||.|.+ .++|..|+..++ +..|.|..++++
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 4455788999999999 99999999999999999999977655 79999999 899999999995 678889888887
Q ss_pred ecc
Q 015149 119 WAY 121 (412)
Q Consensus 119 ~~~ 121 (412)
...
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.92 E-value=8e-09 Score=89.72 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=60.5
Q ss_pred ccHHHHHHHhhcCCCeeeEEEeecC----CCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 015149 144 VTDATLFACFSVFPTCSDARVMWDQ----KTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (412)
Q Consensus 144 ~~~~~l~~~f~~~G~v~~~~~~~d~----~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 210 (412)
-.+++|++.|++||.|.++.+..+. .+++++|++||+|.+.++|.+|++.|+|..+.||.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3567999999999999999998554 445899999999999999999999999999999999999974
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=3.1e-09 Score=76.24 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=60.9
Q ss_pred CCCEEEEcCCCcc-----CCH----HHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeE
Q 015149 46 TCRSVYVGNIHPQ-----VTN----ALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (412)
Q Consensus 46 ~~~tl~V~nLp~~-----~t~----~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~ 116 (412)
+--||+|.-++.+ +-. .+|.+.|+.||.|..++++.++ +||+|.+.++|.+||+ |+|..+.||.|+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 3567999988743 322 5689999999999999998876 9999999999999997 999999999999
Q ss_pred EEecc
Q 015149 117 VNWAY 121 (412)
Q Consensus 117 v~~~~ 121 (412)
|++..
T Consensus 89 V~~k~ 93 (95)
T 1ufw_A 89 ISGPS 93 (95)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 98653
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.75 E-value=1.4e-08 Score=88.10 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=55.8
Q ss_pred CCHHHHHHHHhhcCcccEEEEEeec----------cccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 264 VTSVDLHRHFHALCVGTIEDVRVQR----------DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 264 ~t~~~L~~~F~~~~~G~v~~v~i~~----------~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
-.+++|++.|++| |.|.++.+.+ .+|++||+|.+.++|.+|+..|||+.|+||.|++.|..
T Consensus 141 e~~~dl~~e~~~~--G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKF--GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTT--SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHcc--CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3568999999999 9999999973 36899999999999999999999999999999999864
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.73 E-value=6.9e-08 Score=70.48 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=66.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhc---CcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEE
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHAL---CVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 323 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~---~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~ 323 (412)
++|-|-|||..+++..|+.+.+++ ..|.++.+.+..|.+-|+|+|.+...|.+|.-.|+|.+|.||.|+|.
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 789999999999999999999988 34789999999999999999999999999999999999999999995
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=7.5e-07 Score=64.65 Aligned_cols=86 Identities=17% Similarity=0.137 Sum_probs=70.6
Q ss_pred cceEEEecCCCCCCHHHHHHHHhh---cCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCCC
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHA---LCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 328 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~---~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~~ 328 (412)
.++|.|.|||+.++++.|.-+|+. -|.|.|.++.... +-|+|+|.+.+.|.+.+++ ..+.|+|..|.|.-..+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~~ 84 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPPR 84 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCCC
Confidence 379999999999999999999998 4679999999987 6899999999999999874 578899999999766555
Q ss_pred CCCCCCCCCCCC
Q 015149 329 TPPGTSSTPLPP 340 (412)
Q Consensus 329 ~~~~~~~~~~~~ 340 (412)
.+....-...++
T Consensus 85 ~~~r~ll~gl~~ 96 (104)
T 2dhx_A 85 APARLLLQGLPP 96 (104)
T ss_dssp CCCCCCCCSCCC
T ss_pred CcceEeeecCCC
Confidence 554444444433
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.62 E-value=2.4e-07 Score=67.67 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=65.9
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhcc-----CCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSST-----GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~-----G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
....|+|-|-+||..+++..|+.++.++ |.|+.|.+..+. +-|+|+|.+...|.+|.-.|+|..|.|++|++.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH--~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF--NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT--TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC--CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 3457889999999999999999999999 999988776653 469999999999999999999999999999886
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=1.1e-06 Score=63.70 Aligned_cols=89 Identities=18% Similarity=0.296 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhc---c--CCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEe
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSS---T--GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~---~--G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~ 119 (412)
+-.++|.|.|||.+++++.|.-+|++ - |+|.++.... +-|+|.|.+.+.|+++| ....+.+.+.+|.|..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL-~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVL-AQADHELHGAQLSLRP 80 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHH-TCSCCBSSSSBCEEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHh-cCCcceecCeEEEEEc
Confidence 45678999999999999999999997 2 4888877744 57999999999999999 4557788999999987
Q ss_pred cccCCCCcCCCCCceEEECCCCcccc
Q 015149 120 AYASSQREDTSGHFNVFVGDLSPEVT 145 (412)
Q Consensus 120 ~~~~~~~~~~~~~~~l~v~nlp~~~~ 145 (412)
..+.. ..+|++.+|++.++
T Consensus 81 ~~~~~-------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 81 APPRA-------PARLLLQGLPPGTS 99 (104)
T ss_dssp CCCCC-------CCCCCCCSCCCCCC
T ss_pred CCCCC-------cceEeeecCCCCCC
Confidence 64433 45799999998765
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=1.1e-06 Score=64.18 Aligned_cols=73 Identities=12% Similarity=0.061 Sum_probs=65.1
Q ss_pred ceEEEecCCCCC-C----HHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecCC
Q 015149 253 TTVYVGNLSSEV-T----SVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 327 (412)
Q Consensus 253 ~~l~V~nL~~~~-t----~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~~ 327 (412)
++|+|.||+.++ . .+.++++|..| +++......++=.-..|.|.+.++|.+|...||+..|.|+.|+|-|+.+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~--~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTY--DKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTT--CSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhh--CcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 789999998876 2 25778999999 8888899998855689999999999999999999999999999999983
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.95 E-value=2.9e-05 Score=56.66 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=63.7
Q ss_pred CCCEEEEcCCCccC-C----HHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 46 TCRSVYVGNIHPQV-T----NALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 46 ~~~tl~V~nLp~~~-t----~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
-..+|+|+||+.++ . .+.++++|..|+++......+ +-+-..|.|.++++|.+|...|++..+.|+.++|.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk--SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFg 81 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK--SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA 81 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET--TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC--cceEEEEEeCChHHHHHHHHHhccceecCceeEEEec
Confidence 35689999999876 2 257799999999988766655 4446899999999999999999999999999999998
Q ss_pred cc
Q 015149 121 YA 122 (412)
Q Consensus 121 ~~ 122 (412)
.+
T Consensus 82 q~ 83 (104)
T 1wey_A 82 QT 83 (104)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.77 E-value=0.00013 Score=52.30 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=47.2
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhC
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN 106 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~ 106 (412)
...+.++| +.|+++...||.++|+.||.|. |+++.+. .|||.|.+++.|..|+..+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 33444666 9999999999999999999655 6777664 69999999999999997663
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.62 E-value=0.00017 Score=51.74 Aligned_cols=65 Identities=14% Similarity=0.263 Sum_probs=54.5
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCC------CCEEEEEecCHHHHHHHHHHhCCCccCC
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK------SSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~------~g~afV~f~~~~~A~~Al~~l~~~~~~g 112 (412)
++|.|++||+.+|++++.+.++.+..+.-...+..+. ..-|||.|.+.+++....+.++|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4799999999999999999999988766555555431 3479999999999999999999988753
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.49 E-value=0.00039 Score=49.91 Aligned_cols=62 Identities=10% Similarity=0.205 Sum_probs=54.1
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc--------ccEEEEEeCCHHHHHHHHHHcCCCeeC
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--------KGFGFVRYSTHPEAALAIQMGNARILC 316 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~--------kg~afV~f~~~~~A~~A~~~l~g~~l~ 316 (412)
.+|.|++||+.+|++++.+.++.. ..+........ -.-|+|.|.+.++...-.+.++|+.|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~--~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC--CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc--ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 479999999999999999999999 77777776543 256999999999999999999999874
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.35 E-value=0.001 Score=50.05 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=60.6
Q ss_pred CCCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCC-ceeEEEecc
Q 015149 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG-QPIKVNWAY 121 (412)
Q Consensus 44 ~~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g-~~l~v~~~~ 121 (412)
....+-|.|-+.|... .+.|.+.|++||+|.+... ....++-.|.|.+..+|.+|| ..||..+.| --|-|.+..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEECC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEECC
Confidence 3446779999999885 5688899999999997765 445679999999999999999 789999975 557777654
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.35 E-value=0.0013 Score=49.46 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=60.5
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCC-eeeEEEecC
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCG-KPIKCSWGS 326 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g-~~l~V~~a~ 326 (412)
...|.|.+.|+.. ...+...|+.| |.|.+...........|+|.+..+|.+||.+ ||..|+| -.|-|....
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~--G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQY--GNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTT--SCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhh--CcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 4778899999885 67788899999 9999999866678999999999999999986 9999985 667777654
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.26 E-value=0.00022 Score=51.20 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=44.8
Q ss_pred EEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhC
Q 015149 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN 106 (412)
Q Consensus 49 tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~ 106 (412)
.++| +.|+++...||.++|+.||.|. |.++.+. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 3555 9999999999999999999544 6666654 69999999999999998765
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.14 E-value=0.0029 Score=45.32 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=42.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcC
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGN 311 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~ 311 (412)
..++| ++|..+...||.++|+.||... |+.+.| ..|||.|.+++.|..|++.+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~---I~WidD-TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDD-TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC---CEEEET-TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE---EEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 44555 9999999999999999994223 333333 589999999999999998763
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.70 E-value=0.0012 Score=47.68 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=48.3
Q ss_pred CCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecC------CCCEEEEEecCHHHHHHHHHHhCCCccCC
Q 015149 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD------KSSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (412)
Q Consensus 47 ~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~------~~g~afV~f~~~~~A~~Al~~l~~~~~~g 112 (412)
+-+|.|+.||+.+||+++.+.++.+-++.-...+..+ ...-|||.|.+.++.....+..+|..|.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4569999999999999987777765332211111111 12369999999999999999999988753
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.63 E-value=0.0024 Score=46.06 Aligned_cols=63 Identities=11% Similarity=0.135 Sum_probs=50.8
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecc--------ccEEEEEeCCHHHHHHHHHHcCCCeeCC
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--------KGFGFVRYSTHPEAALAIQMGNARILCG 317 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~--------kg~afV~f~~~~~A~~A~~~l~g~~l~g 317 (412)
-+|.|+.||+.+|++++.+.++.. -.+........ -.-|+|.|.+.++...-.+..+|+.|-+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~--~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPL--PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCC--SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCc--CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 579999999999999999999887 45544443322 2458999999999999999999998743
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.59 E-value=0.0032 Score=45.22 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=44.2
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcC
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGN 311 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~ 311 (412)
..++| ++|..+...||.++|+.| | =..|+.+-| ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~f--g-gv~I~WidD-TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAF--G-NIQISWIDD-TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTS--E-EEEEEEEET-TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhcc--C-CEEEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 45556 999999999999999999 6 334555544 589999999999999999764
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.56 E-value=0.0026 Score=48.43 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=55.2
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcce-EEEee------------c--C---CCCEEEEEecCHHHHHHHHHHhCCCc
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEG-CKLIK------------K--D---KSSYGFVDYFDRRSAALAIVTLNGRH 109 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~-v~~~~------------~--~---~~g~afV~f~~~~~A~~Al~~l~~~~ 109 (412)
..|.|-+.|.+.+ ..+.+.|++||.|.+ +...+ . + ..++-.|+|.+..+|.+|| ..||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE
Confidence 4478888876665 478889999999876 21111 0 0 2468899999999999999 799999
Q ss_pred cCCceeEEEecc
Q 015149 110 IFGQPIKVNWAY 121 (412)
Q Consensus 110 ~~g~~l~v~~~~ 121 (412)
|.|.-|-|.+.+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999888888764
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.54 E-value=0.0013 Score=62.10 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=41.4
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHH
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIV 103 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~ 103 (412)
|+|+|. .|..+++.+|.++|++||+|.++.+-++ .+-||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-SSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-CCeEEEEEeCCHHHHHHHHh
Confidence 789998 7999999999999999999999877553 34599999999999997763
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.26 E-value=0.0055 Score=46.68 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=53.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEE-EEeec-------------------cccEEEEEeCCHHHHHHHHHHcCC
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIED-VRVQR-------------------DKGFGFVRYSTHPEAALAIQMGNA 312 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~-v~i~~-------------------~kg~afV~f~~~~~A~~A~~~l~g 312 (412)
.-|.|.+.|+..+. .+.+.|++| |.|.+ +...+ ......|+|++..+|.+|+.. ||
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~--G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEF--GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGG--SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred eEEEEEecCHHHHH-HHHHHHHhh--ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 45778888766544 566789999 88877 32211 245679999999999999987 99
Q ss_pred CeeCCeeeEEEecC
Q 015149 313 RILCGKPIKCSWGS 326 (412)
Q Consensus 313 ~~l~g~~l~V~~a~ 326 (412)
..|+|.-|-|...+
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988887664
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.69 E-value=0.0057 Score=57.80 Aligned_cols=54 Identities=11% Similarity=0.205 Sum_probs=43.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeecccc-EEEEEeCCHHHHHHHHHH
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKG-FGFVRYSTHPEAALAIQM 309 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg-~afV~f~~~~~A~~A~~~ 309 (412)
++|+|. .+..+++.+|.++|+.| |.|.++.+.+++| |+.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~--g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQF--GPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGG--SCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhc--CCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 789998 69999999999999999 9999999999976 899999999988876543
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.76 E-value=1.3 Score=42.74 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=45.1
Q ss_pred CCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCC
Q 015149 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG 107 (412)
Q Consensus 47 ~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~ 107 (412)
...++|+ +|..+...+|.+.|+.||.|. |+++.+ ..|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~widd---t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWIDD---TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEECSS---SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEEcC---CeEEEEECCHHHHHHHHHHHHh
Confidence 3456665 999999999999999999643 554443 4799999999999999988854
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=76.26 E-value=8.4 Score=36.98 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=44.1
Q ss_pred cceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcC
Q 015149 252 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGN 311 (412)
Q Consensus 252 ~~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~ 311 (412)
...++|+ +|..+...+|.++|+.| |. .+|+.+ |...|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~f--g~-v~V~wi-ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAF--GN-IQISWI-DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGG--CC-CEEEEC-SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhc--CC-EEEEEE-cCCeEEEEECCHHHHHHHHHHHH
Confidence 3456665 99999999999999999 64 345544 34579999999999999999875
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=66.21 E-value=6.5 Score=26.51 Aligned_cols=61 Identities=11% Similarity=0.202 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHhhcC---cccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 263 EVTSVDLHRHFHALC---VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 263 ~~t~~~L~~~F~~~~---~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
.++..+|..++..-+ ...|-.+++..+ |.||+-.. +.+.++++.|++..+.|+.++|..++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 556677777776441 135666666555 89999876 56788999999999999999998764
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=58.19 E-value=43 Score=23.12 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=45.5
Q ss_pred CCceEEECCCCccccHHHHHHHhhcCCCeeeEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh
Q 015149 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194 (412)
Q Consensus 131 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~~~A~~ai~~l 194 (412)
.+.-+.|-|+|..+-..++.-.....|--..|..+ .|.|.|.|.+.++-..|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 34557889999999888888777777766666665 356999999999999999976
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=53.81 E-value=21 Score=23.84 Aligned_cols=58 Identities=10% Similarity=0.201 Sum_probs=37.9
Q ss_pred cCCHHHHHHHhhccCCcc-----eEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 58 QVTNALLQEVFSSTGPLE-----GCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 58 ~~t~~~L~~~f~~~G~i~-----~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
.+...+|..++..-+.|. .|.+ ...|.||+-... .+..++..|++..+.|+.+.|+.+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i----~d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITI----MDNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEE----CSSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEE----eCCcEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 356677777777655433 3333 345899997665 688999999999999999988865
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=46.34 E-value=44 Score=26.63 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=32.8
Q ss_pred ceEEEecCCC-C--------CCHHHHHHHH--hhcCcccEEEEEeecc-ccEEEEEeCCHH
Q 015149 253 TTVYVGNLSS-E--------VTSVDLHRHF--HALCVGTIEDVRVQRD-KGFGFVRYSTHP 301 (412)
Q Consensus 253 ~~l~V~nL~~-~--------~t~~~L~~~F--~~~~~G~v~~v~i~~~-kg~afV~f~~~~ 301 (412)
+.+.|-|+|. . .+..+|++.| ..|.+..|..+--... +|++.|.|.+--
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCCh
Confidence 5677889887 2 2447899977 8895444444433333 688999998743
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=43.79 E-value=77 Score=21.85 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=50.7
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEE
Q 015149 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (412)
Q Consensus 45 ~~~~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~ 118 (412)
..++-|.|-|+|..+-..++.-.....|----| +--.|.|.+.|.+.++-..|+..|-+. .+.++.++
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefyc----dyidgqamirfqnsdeqrlaiqkllnh--nnnklqie 77 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYC----DYIDGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIE 77 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEE----EECSSCEEEEESSHHHHHHHHHHHEET--TTTEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEee----eeecCeeEEEecCChHHHHHHHHHHhc--CCCEEEEE
Confidence 457889999999999999988888888743333 334578999999999999999876432 23444444
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=42.00 E-value=45 Score=26.54 Aligned_cols=48 Identities=17% Similarity=0.307 Sum_probs=33.9
Q ss_pred eEEECCCCc-c--------ccHHHHHHHh--hcCCCeeeEEEeecCCCCCcccEEEEEecCH
Q 015149 134 NVFVGDLSP-E--------VTDATLFACF--SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQ 184 (412)
Q Consensus 134 ~l~v~nlp~-~--------~~~~~l~~~f--~~~G~v~~~~~~~d~~~~~~~g~afV~f~~~ 184 (412)
.+.|.|+|. . ....+|++.| +.|.++. ++.++.+ ..++|++.|+|...
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCC
Confidence 356667776 2 2346899977 9999876 5555553 35789999999963
No 409
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=30.84 E-value=82 Score=19.70 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=42.5
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeCC---HHHHHHHHHH
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYST---HPEAALAIQM 309 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~~---~~~A~~A~~~ 309 (412)
.++.|.++.-.--...+...+... ..|..+.+....+.+.|+|.+ .++..++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~--~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKV--PGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTS--TTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcC--CCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 467788888776778889999988 779999988888889999843 4455666654
No 410
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.19 E-value=19 Score=27.99 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=18.2
Q ss_pred HHHHHHHhhcCcccEEEEEeeccccEEEEEeC
Q 015149 267 VDLHRHFHALCVGTIEDVRVQRDKGFGFVRYS 298 (412)
Q Consensus 267 ~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~ 298 (412)
+|+.++|... |.|+... .+|||+||+..
T Consensus 2 ~~~~~l~~~~--G~Vkwfn--~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGA--GICKWFN--VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEE--EEEEEEE--TTTTEEEEEEE
T ss_pred Ccccccccce--eEEEEEE--CCCCeeEEeeC
Confidence 4566777777 8888665 35889999875
No 411
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=27.51 E-value=1.2e+02 Score=19.21 Aligned_cols=55 Identities=11% Similarity=0.051 Sum_probs=43.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHhhcCcccEEEEEeeccccEEEEEeC----CHHHHHHHHHH
Q 015149 253 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYS----THPEAALAIQM 309 (412)
Q Consensus 253 ~~l~V~nL~~~~t~~~L~~~F~~~~~G~v~~v~i~~~kg~afV~f~----~~~~A~~A~~~ 309 (412)
.++.|.++.-.--...+...+... ..|..+.+....+.+.|+|. +.++...+++.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~--~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNV--NGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTS--TTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcC--CCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 467788888766678888999988 77888988888889999995 45667777775
No 412
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=26.55 E-value=2.3e+02 Score=27.00 Aligned_cols=95 Identities=4% Similarity=0.019 Sum_probs=51.0
Q ss_pred CCEEEEcCCCccCCHHHHHHHhhcc---CC---cceEEEeecCCCCEEEEEecCHHHHHHHHHHhCCCccCCceeEEEec
Q 015149 47 CRSVYVGNIHPQVTNALLQEVFSST---GP---LEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (412)
Q Consensus 47 ~~tl~V~nLp~~~t~~~L~~~f~~~---G~---i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l~~~~~~g~~l~v~~~ 120 (412)
..+|.|+-||+.++.+.|.+..... +. |.+++=..++..-.-.|++....++...+..|-.. ..|...++
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gvrivIelk~~~~~e~vl~~L~k~----t~Lq~s~~ 350 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKN----SDLQISYN 350 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBTTBCCEEEEC------CHHHHHHTTS----STTEEEEE
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCCCCceEEEEEECCCcCHHHHHHHHHHh----cCceeeee
Confidence 3679999999999988876655432 33 44444333332223445566555555555544332 23333333
Q ss_pred ccCCCCcCCCCCceEEECCCCccccHHHHHHHhhc
Q 015149 121 YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSV 155 (412)
Q Consensus 121 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~ 155 (412)
. +..+++.|.|...+-.+|.+.|-.
T Consensus 351 ~----------Nm~al~~g~p~~~~l~~iL~~f~~ 375 (514)
T 2inr_A 351 F----------NMVAISDGRPKLMGIRQIIDSYLN 375 (514)
T ss_dssp E----------ECEEEETTEEEECCHHHHHHHHHH
T ss_pred e----------eEEEeeCCEEEECCHHHHHHHHHH
Confidence 2 123567888888888887776643
No 413
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=25.50 E-value=1.3e+02 Score=19.07 Aligned_cols=55 Identities=7% Similarity=-0.092 Sum_probs=42.1
Q ss_pred CEEEEcCCCccCCHHHHHHHhhccCCcceEEEeecCCCCEEEEEecCHHHHHHHHHHh
Q 015149 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL 105 (412)
Q Consensus 48 ~tl~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~g~afV~f~~~~~A~~Al~~l 105 (412)
.++.|.++...--...|++.+.. ..|..+.+ +-..+.+.|.|.+.++...+++.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v--~~~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKV--DLNEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEE--CSSEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEE--EccCCEEEEEECCHHHHHHHHHHc
Confidence 56889999888888999999999 77887776 334457888888666677777543
No 414
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=20.77 E-value=2.3e+02 Score=20.11 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=43.8
Q ss_pred EecCCCCCCHHHHHHHHh-hcCcccEEEEEeeccccEEEEEeCCHHHHHHHHHHcCCCeeCCeeeEEEecC
Q 015149 257 VGNLSSEVTSVDLHRHFH-ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 326 (412)
Q Consensus 257 V~nL~~~~t~~~L~~~F~-~~~~G~v~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g~~l~V~~a~ 326 (412)
|-.++..+.-++|..-.. .| |.-.+++.. .....|-..+.+|-.+|++.|+-. -.-+.|+|-...
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~f--Gq~ldL~y~--n~EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~ 86 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAF--GQSMDLHYT--NNELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVI 86 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHH--SSCEEEEEC--SSSSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEE
T ss_pred EEeccCCccHHHHHHHHHHHh--CCeeeEEEe--cceEEEeccCHHHHHHHHHHHccC-CcccceEEEEec
Confidence 445677888888876554 45 766666665 235789999999999999987654 233445554433
No 415
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.72 E-value=45 Score=23.80 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCCCCEEEEcCCCccCCHHHHHHHhh
Q 015149 35 SGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFS 69 (412)
Q Consensus 35 s~~~~~~~~~~~~~tl~V~nLp~~~t~~~L~~~f~ 69 (412)
++..|++.-..+.++|+|..-|..+|+++|.+.+.
T Consensus 3 ~~~~~pp~~~~e~~rl~ip~DP~~Ws~~~V~~WL~ 37 (98)
T 1x66_A 3 SGSSGPPNMTTNERRVIVPADPTLWTQEHVRQWLE 37 (98)
T ss_dssp SCCCCCCCCCCSSSCCCCCSSGGGCCTTHHHHHHH
T ss_pred CCCCCCCCccccceecCCCCChhhcCHHHHHHHHH
Confidence 34445666667778899999999999999988554
No 416
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=20.34 E-value=2.4e+02 Score=20.07 Aligned_cols=72 Identities=8% Similarity=0.074 Sum_probs=41.6
Q ss_pred CCEEEEcCCCccCCHHH--HHHHhhc--------cC---C--cceEEEeecC------CCCEEEEEecCHHHHH---HHH
Q 015149 47 CRSVYVGNIHPQVTNAL--LQEVFSS--------TG---P--LEGCKLIKKD------KSSYGFVDYFDRRSAA---LAI 102 (412)
Q Consensus 47 ~~tl~V~nLp~~~t~~~--L~~~f~~--------~G---~--i~~v~~~~~~------~~g~afV~f~~~~~A~---~Al 102 (412)
++.|.|.++|..-.+.. +..+|.. .+ . |.++.-..++ ....-.|.|....+-. +|.
T Consensus 3 r~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 3 MGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHH
T ss_pred ccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 46699999999733222 4455443 22 1 2322222111 2457778887765544 444
Q ss_pred HHhCCCccCCceeEEE
Q 015149 103 VTLNGRHIFGQPIKVN 118 (412)
Q Consensus 103 ~~l~~~~~~g~~l~v~ 118 (412)
.+.....+.|.+|++.
T Consensus 83 r~k~~vtykg~pirls 98 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHCCEEETTEEEEEE
T ss_pred HHhCceeeCCcceeec
Confidence 5555677889998875
No 417
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=20.13 E-value=22 Score=18.92 Aligned_cols=12 Identities=25% Similarity=0.601 Sum_probs=9.0
Q ss_pred CCCEEEEcCCCc
Q 015149 46 TCRSVYVGNIHP 57 (412)
Q Consensus 46 ~~~tl~V~nLp~ 57 (412)
.-|+|||++-|.
T Consensus 4 qvrtiwvggtpe 15 (36)
T 2ki0_A 4 QVRTIWVGGTPE 15 (36)
T ss_dssp SCCCCCBCCCHH
T ss_pred eeEEEEecCCHH
Confidence 457899998763
Done!