BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015150
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 468 bits (1204), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/405 (56%), Positives = 309/405 (76%), Gaps = 4/405 (0%)
Query: 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
PMVRR+AA+ LG+FA +E ++KSEI+ +F L D+QDSVRLLAVE C + +LL +
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238
Query: 62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
D A ++P + ++DKSWRVRYMVA++ EL +AVGPE T++D+VPA+ L++D EAEV
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298
Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
R AA+ KV + C L+ + + + ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358
Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WR
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418
Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 419 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 478
Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
I+P+VL M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++F
Sbjct: 479 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 538
Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
NVAK LQ + PI+D S ++ ++P L +L++D DVDV++FA +AL
Sbjct: 539 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/392 (21%), Positives = 156/392 (39%), Gaps = 44/392 (11%)
Query: 9 ATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 68
A LG F V ++ E L ++ VR AVE A+ P D AH +
Sbjct: 70 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 129
Query: 69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGK 128
P++ + W A L+ +C ++++ + L D+ VR AAA K
Sbjct: 130 PLVKRLA-GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188
Query: 129 VTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 188
+ + ++L + I+P L+SD VR + +A +L ++ ++P
Sbjct: 189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248
Query: 189 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 248
+D+ VR + K ++ + +G ++ L+PA L
Sbjct: 249 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL------------------ 290
Query: 249 LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQ 304
+KD +R AA++ VK E D M I+P
Sbjct: 291 ---------------------MKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQILPC 329
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
+ E++++ + + + I L+P++G + T LLP+ + KD P ++ N+ L
Sbjct: 330 IKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLD 389
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRF 396
+ ++ + +S+ P +VEL+ED VR
Sbjct: 390 CVNEVIGIRQLSQSLLPAIVELAEDAKWRVRL 421
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 85/406 (20%), Positives = 153/406 (37%), Gaps = 37/406 (9%)
Query: 4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 63
+R ++ L A + +SE++ + T D+D V L E G L+ +
Sbjct: 27 LRLNSIKKLSTIALALGVERTRSELLPFLTD-TIYDEDEVLLALAEQLGTFTTLVGGPEY 85
Query: 64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 123
V +LP + + + + VR L + P + VP RL + R
Sbjct: 86 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 145
Query: 124 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 183
+A G + +C + + L SD + VR A A+ + A +L D +
Sbjct: 146 SACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 204
Query: 184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 243
++P+F +L DE VRL + + Q++ + L ++P + + AED+ WRVR +
Sbjct: 205 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 264
Query: 244 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 303
+ L +G L +KD +R AA++ VK E D I+
Sbjct: 265 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM- 323
Query: 304 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 363
+Q+LP + D ++K +A V+
Sbjct: 324 ----------------------------------TQILPCIKELVSDANQHVKSALASVI 349
Query: 364 QSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409
L PI+ + + + P + +D +VR L ++V+
Sbjct: 350 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 395
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 98/223 (43%)
Query: 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 87
++ +F +D+ VRL + + +++ + +LP IV ++D WRVR +
Sbjct: 365 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAII 424
Query: 88 NQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP 147
+ L +G E + + L D+ +R AA + K+ E A I+P
Sbjct: 425 EYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 484
Query: 148 CVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 207
V +S D + R I ++ + G+D T + +LP L + D +VR N+ L
Sbjct: 485 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSL 544
Query: 208 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 250
++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 545 QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 587
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 93/233 (39%), Gaps = 8/233 (3%)
Query: 171 MAPILGKDATIEQLLPI--FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 228
MA G D+ L PI + L++E +RLN I KL + +G++ LLP +
Sbjct: 1 MAAADGDDS----LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLT 56
Query: 229 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRL 288
+ D V LA+ E + + +G + L + +RD A +++ +
Sbjct: 57 DTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 115
Query: 289 AEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS 348
+ E P H VP V + + R + S+ P + S + ++L N
Sbjct: 116 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLC 174
Query: 349 KDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401
D P ++ A L +++ V+ I P L+ D VR A +A
Sbjct: 175 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 227
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 468 bits (1204), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/405 (56%), Positives = 309/405 (76%), Gaps = 4/405 (0%)
Query: 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
PMVRR+AA+ LG+FA +E ++KSEI+ +F L D+QDSVRLLAVE C + +LL +
Sbjct: 170 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 229
Query: 62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
D A ++P + ++DKSWRVRYMVA++ EL +AVGPE T++D+VPA+ L++D EAEV
Sbjct: 230 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 289
Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
R AA+ KV + C L+ + + + ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 290 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 349
Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WR
Sbjct: 350 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 409
Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 410 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 469
Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
I+P+VL M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++F
Sbjct: 470 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 529
Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
NVAK LQ + PI+D S ++ ++P L +L++D DVDV++FA +AL
Sbjct: 530 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 574
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/392 (21%), Positives = 156/392 (39%), Gaps = 44/392 (11%)
Query: 9 ATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 68
A LG F V ++ E L ++ VR AVE A+ P D AH +
Sbjct: 61 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 120
Query: 69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGK 128
P++ + W A L+ +C ++++ + L D+ VR AAA K
Sbjct: 121 PLVKRLA-GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 179
Query: 129 VTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 188
+ + ++L + I+P L+SD VR + +A +L ++ ++P
Sbjct: 180 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 239
Query: 189 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 248
+D+ VR + K ++ + +G ++ L+PA L
Sbjct: 240 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL------------------ 281
Query: 249 LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQ 304
+KD +R AA++ VK E D M I+P
Sbjct: 282 ---------------------MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC 320
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
+ E++++ + + + I L+P++G + T LLP+ + KD P ++ N+ L
Sbjct: 321 IKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLD 380
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRF 396
+ ++ + +S+ P +VEL+ED VR
Sbjct: 381 CVNEVIGIRQLSQSLLPAIVELAEDAKWRVRL 412
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/406 (21%), Positives = 153/406 (37%), Gaps = 37/406 (9%)
Query: 4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 63
+R ++ L A + +SE++ + T D+D V L E G L+ +
Sbjct: 18 LRLNSIKKLSTIALALGVERTRSELLPFLTD-TIYDEDEVLLALAEQLGTFTTLVGGPEY 76
Query: 64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 123
V +LP + + + + VR L + P + VP RL + R
Sbjct: 77 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 136
Query: 124 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 183
+A G + +C + + L SD + VR A A+ + A +L D +
Sbjct: 137 SACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 195
Query: 184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 243
++P+F +L DE VRL + + Q++ + L ++P + + AED+ WRVR +
Sbjct: 196 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 255
Query: 244 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 303
+ L +G L +KD +R AA++ VK E D I+
Sbjct: 256 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM- 314
Query: 304 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 363
SQ+LP + D ++K +A V+
Sbjct: 315 ----------------------------------SQILPCIKELVSDANQHVKSALASVI 340
Query: 364 QSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409
L PI+ + + + P + +D +VR L ++V+
Sbjct: 341 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 386
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 98/223 (43%)
Query: 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 87
++ +F +D+ VRL + + +++ + +LP IV ++D WRVR +
Sbjct: 356 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAII 415
Query: 88 NQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP 147
+ L +G E + + L D+ +R AA + K+ E A I+P
Sbjct: 416 EYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 475
Query: 148 CVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 207
V +S D + R I ++ + G+D T + +LP L + D +VR N+ L
Sbjct: 476 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSL 535
Query: 208 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 250
++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 536 QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 578
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 2/217 (0%)
Query: 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 244
+ + + L++E +RLN I KL + +G++ LLP + + D V LA+ E
Sbjct: 4 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 62
Query: 245 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 304
+ + +G + L + +RD A +++ ++ E P H VP
Sbjct: 63 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 122
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
V + + R + S+ P + S + ++L N D P ++ A L
Sbjct: 123 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 181
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401
+++ V+ I P L+ D VR A +A
Sbjct: 182 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 218
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 468 bits (1204), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/405 (56%), Positives = 309/405 (76%), Gaps = 4/405 (0%)
Query: 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
PMVRR+AA+ LG+FA +E ++KSEI+ +F L D+QDSVRLLAVE C + +LL +
Sbjct: 172 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 231
Query: 62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
D A ++P + ++DKSWRVRYMVA++ EL +AVGPE T++D+VPA+ L++D EAEV
Sbjct: 232 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 291
Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
R AA+ KV + C L+ + + + ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 292 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 351
Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WR
Sbjct: 352 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 411
Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 412 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 471
Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
I+P+VL M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++F
Sbjct: 472 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 531
Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
NVAK LQ + PI+D S ++ ++P L +L++D DVDV++FA +AL
Sbjct: 532 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 576
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/392 (21%), Positives = 156/392 (39%), Gaps = 44/392 (11%)
Query: 9 ATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 68
A LG F V ++ E L ++ VR AVE A+ P D AH +
Sbjct: 63 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 122
Query: 69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGK 128
P++ + W A L+ +C ++++ + L D+ VR AAA K
Sbjct: 123 PLVKRLA-GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 181
Query: 129 VTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 188
+ + ++L + I+P L+SD VR + +A +L ++ ++P
Sbjct: 182 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 241
Query: 189 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 248
+D+ VR + K ++ + +G ++ L+PA L
Sbjct: 242 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL------------------ 283
Query: 249 LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQ 304
+KD +R AA++ VK E D M I+P
Sbjct: 284 ---------------------MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC 322
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
+ E++++ + + + I L+P++G + T LLP+ + KD P ++ N+ L
Sbjct: 323 IKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLD 382
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRF 396
+ ++ + +S+ P +VEL+ED VR
Sbjct: 383 CVNEVIGIRQLSQSLLPAIVELAEDAKWRVRL 414
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/406 (21%), Positives = 153/406 (37%), Gaps = 37/406 (9%)
Query: 4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 63
+R ++ L A + +SE++ + T D+D V L E G L+ +
Sbjct: 20 LRLNSIKKLSTIALALGVERTRSELLPFLTD-TIYDEDEVLLALAEQLGTFTTLVGGPEY 78
Query: 64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 123
V +LP + + + + VR L + P + VP RL + R
Sbjct: 79 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 138
Query: 124 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 183
+A G + +C + + L SD + VR A A+ + A +L D +
Sbjct: 139 SACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 197
Query: 184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 243
++P+F +L DE VRL + + Q++ + L ++P + + AED+ WRVR +
Sbjct: 198 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 257
Query: 244 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 303
+ L +G L +KD +R AA++ VK E D I+
Sbjct: 258 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM- 316
Query: 304 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 363
SQ+LP + D ++K +A V+
Sbjct: 317 ----------------------------------SQILPCIKELVSDANQHVKSALASVI 342
Query: 364 QSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409
L PI+ + + + P + +D +VR L ++V+
Sbjct: 343 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 388
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 98/223 (43%)
Query: 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 87
++ +F +D+ VRL + + +++ + +LP IV ++D WRVR +
Sbjct: 358 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAII 417
Query: 88 NQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP 147
+ L +G E + + L D+ +R AA + K+ E A I+P
Sbjct: 418 EYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 477
Query: 148 CVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 207
V +S D + R I ++ + G+D T + +LP L + D +VR N+ L
Sbjct: 478 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSL 537
Query: 208 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 250
++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 538 QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 580
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 2/217 (0%)
Query: 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 244
+ + + L++E +RLN I KL + +G++ LLP + + D V LA+ E
Sbjct: 6 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 64
Query: 245 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 304
+ + +G + L + +RD A +++ ++ E P H VP
Sbjct: 65 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 124
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
V + + R + S+ P + S + ++L N D P ++ A L
Sbjct: 125 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 183
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401
+++ V+ I P L+ D VR A +A
Sbjct: 184 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 220
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 468 bits (1204), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/405 (56%), Positives = 309/405 (76%), Gaps = 4/405 (0%)
Query: 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
PMVRR+AA+ LG+FA +E ++KSEI+ +F L D+QDSVRLLAVE C + +LL +
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237
Query: 62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
D A ++P + ++DKSWRVRYMVA++ EL +AVGPE T++D+VPA+ L++D EAEV
Sbjct: 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
R AA+ KV + C L+ + + + ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WR
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 417
Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 418 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 477
Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
I+P+VL M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++F
Sbjct: 478 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 537
Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
NVAK LQ + PI+D S ++ ++P L +L++D DVDV++FA +AL
Sbjct: 538 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/392 (21%), Positives = 156/392 (39%), Gaps = 44/392 (11%)
Query: 9 ATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 68
A LG F V ++ E L ++ VR AVE A+ P D AH +
Sbjct: 69 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 128
Query: 69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGK 128
P++ + W A L+ +C ++++ + L D+ VR AAA K
Sbjct: 129 PLVKRLA-GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 187
Query: 129 VTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 188
+ + ++L + I+P L+SD VR + +A +L ++ ++P
Sbjct: 188 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 247
Query: 189 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 248
+D+ VR + K ++ + +G ++ L+PA L
Sbjct: 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL------------------ 289
Query: 249 LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQ 304
+KD +R AA++ VK E D M I+P
Sbjct: 290 ---------------------MKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQILPC 328
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
+ E++++ + + + I L+P++G + T LLP+ + KD P ++ N+ L
Sbjct: 329 IKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLD 388
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRF 396
+ ++ + +S+ P +VEL+ED VR
Sbjct: 389 CVNEVIGIRQLSQSLLPAIVELAEDAKWRVRL 420
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 85/406 (20%), Positives = 153/406 (37%), Gaps = 37/406 (9%)
Query: 4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 63
+R ++ L A + +SE++ + T D+D V L E G L+ +
Sbjct: 26 LRLNSIKKLSTIALALGVERTRSELLPFLTD-TIYDEDEVLLALAEQLGTFTTLVGGPEY 84
Query: 64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 123
V +LP + + + + VR L + P + VP RL + R
Sbjct: 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 144
Query: 124 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 183
+A G + +C + + L SD + VR A A+ + A +L D +
Sbjct: 145 SACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203
Query: 184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 243
++P+F +L DE VRL + + Q++ + L ++P + + AED+ WRVR +
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263
Query: 244 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 303
+ L +G L +KD +R AA++ VK E D I+
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM- 322
Query: 304 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 363
+Q+LP + D ++K +A V+
Sbjct: 323 ----------------------------------TQILPCIKELVSDANQHVKSALASVI 348
Query: 364 QSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409
L PI+ + + + P + +D +VR L ++V+
Sbjct: 349 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 98/223 (43%)
Query: 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 87
++ +F +D+ VRL + + +++ + +LP IV ++D WRVR +
Sbjct: 364 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAII 423
Query: 88 NQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP 147
+ L +G E + + L D+ +R AA + K+ E A I+P
Sbjct: 424 EYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483
Query: 148 CVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 207
V +S D + R I ++ + G+D T + +LP L + D +VR N+ L
Sbjct: 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSL 543
Query: 208 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 250
++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 544 QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 2/217 (0%)
Query: 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 244
+ + + L++E +RLN I KL + +G++ LLP + + D V LA+ E
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 70
Query: 245 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 304
+ + +G + L + +RD A +++ ++ E P H VP
Sbjct: 71 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
V + + R + S+ P + S + ++L N D P ++ A L
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401
+++ V+ I P L+ D VR A +A
Sbjct: 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 226
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 468 bits (1203), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/405 (56%), Positives = 309/405 (76%), Gaps = 4/405 (0%)
Query: 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
PMVRR+AA+ LG+FA +E ++KSEI+ +F L D+QDSVRLLAVE C + +LL +
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237
Query: 62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
D A ++P + ++DKSWRVRYMVA++ EL +AVGPE T++D+VPA+ L++D EAEV
Sbjct: 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
R AA+ KV + C L+ + + + ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WR
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 417
Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 418 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 477
Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
I+P+VL M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++F
Sbjct: 478 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 537
Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
NVAK LQ + PI+D S ++ ++P L +L++D DVDV++FA +AL
Sbjct: 538 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/392 (21%), Positives = 156/392 (39%), Gaps = 44/392 (11%)
Query: 9 ATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 68
A LG F V ++ E L ++ VR AVE A+ P D AH +
Sbjct: 69 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 128
Query: 69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGK 128
P++ + W A L+ +C ++++ + L D+ VR AAA K
Sbjct: 129 PLVKRLA-GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 187
Query: 129 VTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 188
+ + ++L + I+P L+SD VR + +A +L ++ ++P
Sbjct: 188 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 247
Query: 189 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 248
+D+ VR + K ++ + +G ++ L+PA L
Sbjct: 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL------------------ 289
Query: 249 LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQ 304
+KD +R AA++ VK E D M I+P
Sbjct: 290 ---------------------MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC 328
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
+ E++++ + + + I L+P++G + T LLP+ + KD P ++ N+ L
Sbjct: 329 IKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLD 388
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRF 396
+ ++ + +S+ P +VEL+ED VR
Sbjct: 389 CVNEVIGIRQLSQSLLPAIVELAEDAKWRVRL 420
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/406 (21%), Positives = 153/406 (37%), Gaps = 37/406 (9%)
Query: 4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 63
+R ++ L A + +SE++ + T D+D V L E G L+ +
Sbjct: 26 LRLNSIKKLSTIALALGVERTRSELLPFLTD-TIYDEDEVLLALAEQLGTFTTLVGGPEY 84
Query: 64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 123
V +LP + + + + VR L + P + VP RL + R
Sbjct: 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 144
Query: 124 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 183
+A G + +C + + L SD + VR A A+ + A +L D +
Sbjct: 145 SACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203
Query: 184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 243
++P+F +L DE VRL + + Q++ + L ++P + + AED+ WRVR +
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263
Query: 244 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 303
+ L +G L +KD +R AA++ VK E D I+
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM- 322
Query: 304 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 363
SQ+LP + D ++K +A V+
Sbjct: 323 ----------------------------------SQILPCIKELVSDANQHVKSALASVI 348
Query: 364 QSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409
L PI+ + + + P + +D +VR L ++V+
Sbjct: 349 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 98/223 (43%)
Query: 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 87
++ +F +D+ VRL + + +++ + +LP IV ++D WRVR +
Sbjct: 364 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAII 423
Query: 88 NQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP 147
+ L +G E + + L D+ +R AA + K+ E A I+P
Sbjct: 424 EYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483
Query: 148 CVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 207
V +S D + R I ++ + G+D T + +LP L + D +VR N+ L
Sbjct: 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSL 543
Query: 208 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 250
++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 544 QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 2/217 (0%)
Query: 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 244
+ + + L++E +RLN I KL + +G++ LLP + + D V LA+ E
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 70
Query: 245 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 304
+ + +G + L + +RD A +++ ++ E P H VP
Sbjct: 71 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
V + + R + S+ P + S + ++L N D P ++ A L
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401
+++ V+ I P L+ D VR A +A
Sbjct: 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 226
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 468 bits (1203), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/405 (56%), Positives = 309/405 (76%), Gaps = 4/405 (0%)
Query: 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
PMVRR+AA+ LG+FA +E ++KSEI+ +F L D+QDSVRLLAVE C + +LL +
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238
Query: 62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
D A ++P + ++DKSWRVRYMVA++ EL +AVGPE T++D+VPA+ L++D EAEV
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298
Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
R AA+ KV + C L+ + + + ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358
Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WR
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418
Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 419 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 478
Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
I+P+VL M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++F
Sbjct: 479 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 538
Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
NVAK LQ + PI+D S ++ ++P L +L++D DVDV++FA +AL
Sbjct: 539 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/392 (21%), Positives = 156/392 (39%), Gaps = 44/392 (11%)
Query: 9 ATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 68
A LG F V ++ E L ++ VR AVE A+ P D AH +
Sbjct: 70 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 129
Query: 69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGK 128
P++ + W A L+ +C ++++ + L D+ VR AAA K
Sbjct: 130 PLVKRLA-GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188
Query: 129 VTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 188
+ + ++L + I+P L+SD VR + +A +L ++ ++P
Sbjct: 189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248
Query: 189 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 248
+D+ VR + K ++ + +G ++ L+PA L
Sbjct: 249 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL------------------ 290
Query: 249 LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQ 304
+KD +R AA++ VK E D M I+P
Sbjct: 291 ---------------------MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC 329
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
+ E++++ + + + I L+P++G + T LLP+ + KD P ++ N+ L
Sbjct: 330 IKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLD 389
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRF 396
+ ++ + +S+ P +VEL+ED VR
Sbjct: 390 CVNEVIGIRQLSQSLLPAIVELAEDAKWRVRL 421
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/406 (21%), Positives = 153/406 (37%), Gaps = 37/406 (9%)
Query: 4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 63
+R ++ L A + +SE++ + T D+D V L E G L+ +
Sbjct: 27 LRLNSIKKLSTIALALGVERTRSELLPFLTD-TIYDEDEVLLALAEQLGTFTTLVGGPEY 85
Query: 64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 123
V +LP + + + + VR L + P + VP RL + R
Sbjct: 86 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 145
Query: 124 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 183
+A G + +C + + L SD + VR A A+ + A +L D +
Sbjct: 146 SACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 204
Query: 184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 243
++P+F +L DE VRL + + Q++ + L ++P + + AED+ WRVR +
Sbjct: 205 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 264
Query: 244 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 303
+ L +G L +KD +R AA++ VK E D I+
Sbjct: 265 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM- 323
Query: 304 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 363
SQ+LP + D ++K +A V+
Sbjct: 324 ----------------------------------SQILPCIKELVSDANQHVKSALASVI 349
Query: 364 QSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409
L PI+ + + + P + +D +VR L ++V+
Sbjct: 350 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 395
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 98/223 (43%)
Query: 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 87
++ +F +D+ VRL + + +++ + +LP IV ++D WRVR +
Sbjct: 365 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAII 424
Query: 88 NQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP 147
+ L +G E + + L D+ +R AA + K+ E A I+P
Sbjct: 425 EYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 484
Query: 148 CVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 207
V +S D + R I ++ + G+D T + +LP L + D +VR N+ L
Sbjct: 485 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSL 544
Query: 208 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 250
++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 545 QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 587
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 93/233 (39%), Gaps = 8/233 (3%)
Query: 171 MAPILGKDATIEQLLPI--FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 228
MA G D+ L PI + L++E +RLN I KL + +G++ LLP +
Sbjct: 1 MAAADGDDS----LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLT 56
Query: 229 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRL 288
+ D V LA+ E + + +G + L + +RD A +++ +
Sbjct: 57 DTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 115
Query: 289 AEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS 348
+ E P H VP V + + R + S+ P + S + ++L N
Sbjct: 116 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLC 174
Query: 349 KDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401
D P ++ A L +++ V+ I P L+ D VR A +A
Sbjct: 175 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 227
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/405 (55%), Positives = 297/405 (73%), Gaps = 4/405 (0%)
Query: 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
P VRR+AA+ LG+FA +E ++KSEI+ F L D+QDSVRLLAVE C + +LL +
Sbjct: 172 PXVRRAAASKLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQE 231
Query: 62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
D A + P + ++DKSWRVRY VA++ EL +AVGPE T++D+VPA+ L +D EAEV
Sbjct: 232 DLEALVXPTLRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEV 291
Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
R AA+ KV + C L+ + + ILPC+KEL SD++QHV+SALA+VI G++PILGK
Sbjct: 292 RAAASHKVKEFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGK 351
Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WR
Sbjct: 352 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 411
Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
VRLAIIEY PLLA QLGV FFD+KL +LC WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 412 VRLAIIEYXPLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKEWA 471
Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
I+P+VL +P+YL+R T L I++L+ V G +IT LP V+ + D V N++F
Sbjct: 472 HATIIPKVLAXSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVANVRF 531
Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
NVAK LQ + PI+D S ++ ++P L +L++D DVDV++FA +AL
Sbjct: 532 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 576
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/392 (21%), Positives = 153/392 (39%), Gaps = 44/392 (11%)
Query: 9 ATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 68
A LG F V ++ E L ++ VR AVE A+ P D AH +
Sbjct: 63 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 122
Query: 69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGK 128
P++ + W A L+ +C ++++ + L D+ VR AAA K
Sbjct: 123 PLVKRLA-GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAASK 181
Query: 129 VTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 188
+ + ++L + I+P L+SD VR + +A +L ++ + P
Sbjct: 182 LGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPTL 241
Query: 189 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 248
+D+ VR + K ++ + +G ++ L+PA L
Sbjct: 242 RQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLX----------------- 284
Query: 249 LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQ 304
KD +R AA++ VK E D I+P
Sbjct: 285 ----------------------KDCEAEVRAAASHKVKEFCENLSADCRENVIXSQILPC 322
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
+ E++++ + + + I L+P++G + T LLP+ + KD P ++ N+ L
Sbjct: 323 IKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLD 382
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRF 396
+ ++ + +S+ P +VEL+ED VR
Sbjct: 383 CVNEVIGIRQLSQSLLPAIVELAEDAKWRVRL 414
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/406 (20%), Positives = 149/406 (36%), Gaps = 37/406 (9%)
Query: 4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 63
+R ++ L A + +SE++ + T D+D V L E G L+ +
Sbjct: 20 LRLNSIKKLSTIALALGVERTRSELLPFLTD-TIYDEDEVLLALAEQLGTFTTLVGGPEY 78
Query: 64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 123
V +LP + + + + VR L + P + VP RL + R
Sbjct: 79 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 138
Query: 124 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 183
+A G + +C + + L SD + VR A A+ + A +L D +
Sbjct: 139 SACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAASKLGEFAKVLELDNVKSE 197
Query: 184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 243
++P F +L DE VRL + + Q++ + L + P + + AED+ WRVR +
Sbjct: 198 IIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPTLRQAAEDKSWRVRYXVA 257
Query: 244 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 303
+ L +G L KD +R AA++ VK E D
Sbjct: 258 DKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVKEFCENLSAD-------- 309
Query: 304 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 363
+ SQ+LP + D ++K +A V+
Sbjct: 310 ---------------------------CRENVIXSQILPCIKELVSDANQHVKSALASVI 342
Query: 364 QSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409
L PI+ + + + P + +D +VR L ++V+
Sbjct: 343 XGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 388
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 93/223 (41%)
Query: 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 87
++ +F +D+ VRL + + +++ + +LP IV ++D WRVR +
Sbjct: 358 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAII 417
Query: 88 NQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP 147
L +G E + L D+ +R AA + K+ E A I+P
Sbjct: 418 EYXPLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 477
Query: 148 CVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 207
V S D + R I ++ + G+D T + LP L D +VR N+ L
Sbjct: 478 KVLAXSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSL 537
Query: 208 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 250
++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 538 QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 580
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 2/217 (0%)
Query: 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 244
+ + + L++E +RLN I KL + +G++ LLP + + D V LA+ E
Sbjct: 6 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 64
Query: 245 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 304
+ + +G + L + +RD A +++ ++ E P H VP
Sbjct: 65 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 124
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
V + + R + S+ P + S + ++L N D P ++ A L
Sbjct: 125 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPXVRRAAASKLG 183
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401
+++ V+ I P L+ D VR A +A
Sbjct: 184 EFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEA 220
>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 232
Score = 241 bits (614), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 160/218 (73%)
Query: 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 244
+ + + L++E +RLN I KL + +G++ LSQSLLPAIVELAED WRVRLAIIE
Sbjct: 9 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIE 68
Query: 245 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 304
Y+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA I+P+
Sbjct: 69 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 128
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
VL M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ
Sbjct: 129 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 188
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
+ PI+D S ++ ++P L +L++D DVDV++FA +AL
Sbjct: 189 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 226
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 1/223 (0%)
Query: 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 87
I + +EL +D +RL +++ + L + +LP IV ++D WRVR +
Sbjct: 9 IAVLIDELRNEDV-QLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAII 67
Query: 88 NQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP 147
+ L +G E + + L D+ +R AA + K+ E A I+P
Sbjct: 68 EYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 127
Query: 148 CVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 207
V +S D + R I ++ + G+D T + +LP L + D +VR N+ L
Sbjct: 128 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSL 187
Query: 208 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 250
++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 188 QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 230
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALG 55
VR + A +L K ++ + L+SE+ I E+LTQD V+ A E L
Sbjct: 179 VRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 230
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 116
D V H+LP I ++ W RY A + C GPEP++ +P + L++D
Sbjct: 237 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 294
Query: 117 NEAEVRIAAAGKVTKICRILNPELAIQHI 145
VR AA V +IC +L PE AI +
Sbjct: 295 PSVVVRDTAAWTVGRICELL-PEAAINDV 322
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA 347
H++P + E I NP + YR + A + + G E SQL P+VI A
Sbjct: 241 HVLPFIKEHIKNPDWRYRDAAVMAFGCI--LEGPEP--SQLKPLVIQA 284
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 116
D V H+LP I ++ W RY A + C GPEP++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 117 NEAEVRIAAAGKVTKICRILNPELAIQHI 145
VR AA V +IC +L PE AI +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA 347
H++P + E I NP + YR + A + + G E SQL P+VI A
Sbjct: 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCI--LEGPEP--SQLKPLVIQA 409
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 116
D V H+LP I ++ W RY A + C GPEP++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 117 NEAEVRIAAAGKVTKICRILNPELAIQHI 145
VR AA V +IC +L PE AI +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA 347
H++P + E I NP + YR + A + + G E SQL P+VI A
Sbjct: 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCI--LEGPEP--SQLKPLVIQA 409
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 116
D V H+LP I ++ W RY A + C GPEP++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 117 NEAEVRIAAAGKVTKICRILNPELAIQHI 145
VR AA V +IC +L PE AI +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA 347
H++P + E I NP + YR + A + + G E SQL P+VI A
Sbjct: 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCI--LEGPEP--SQLKPLVIQA 409
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 116
D V H+LP I ++ W RY A + C GPEP++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 117 NEAEVRIAAAGKVTKICRILNPELAIQHI 145
VR AA V +IC +L PE AI +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA 347
H++P + E I NP + YR + A + + G E SQL P+VI A
Sbjct: 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCI--LEGPEP--SQLKPLVIQA 409
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 116
D V H+LP I ++ WR R + E GPEP + +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILE--GPEPNQLKPLVIQAMPTLIELMKD 419
Query: 117 NEAEVRIAAAGKVTKICRILNPELAIQHI 145
VR A V +IC +L PE AI +
Sbjct: 420 PSVVVRDTTAWTVGRICELL-PEAAINDV 447
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 116
D V H+LP I ++ WR R + E GPEP + P + L +D
Sbjct: 368 DIVPHVLPFIKEHIKNPDWRYRDAAVXAFGSILE--GPEPNQLKPLVIQAXPTLIELXKD 425
Query: 117 NEAEVRIAAAGKVTKICRILNPELAIQHI 145
VR A V +IC +L PE AI +
Sbjct: 426 PSVVVRDTTAWTVGRICELL-PEAAINDV 453
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 116
D V H+LP I ++ W RY A + C GPEP++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 117 NEAEVRIAAAGKVTKICRILNPE 139
VR AA V +IC +L PE
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PE 441
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA 347
H++P + E I NP + YR + A + + G E SQL P+VI A
Sbjct: 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCI--LEGPEP--SQLKPLVIQA 409
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 33/167 (19%)
Query: 114 LRDNEAEVRIAAAGKVTKICR---ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMG 170
L D A VR A + C+ I +P++ Q + D S +VR A A I
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF-----DKSTNVRRATAFAI-- 152
Query: 171 MAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 230
++ ATI P+ ++LLKD DVR N + +N+ D+ VE
Sbjct: 153 --SVINDKATI----PLLINLLKDPNGDVR-NWAAFAININKYDNSDIRD-----CFVEX 200
Query: 231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDK--LGALCMQWLKDKVY 275
+D++ VR+ I +G+ + DK L LC + K+ VY
Sbjct: 201 LQDKNEEVRIEAI---------IGLSYRKDKRVLSVLCDELKKNTVY 238
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 211
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 26/143 (18%)
Query: 101 PTRSD--VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ 158
P R+D V Y++ L+D+ VR AAA + KI E A++ ++ +K D
Sbjct: 13 PLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKI----GDERAVEPLIKALK----DEDA 64
Query: 159 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 218
VR A A + +G + +E L + LKDE VR + L Q+ ++
Sbjct: 65 WVRRAAADAL----GQIGDERAVEPL----IKALKDEDGWVRQSAAVALGQIGDERAVEP 116
Query: 219 LSQSLLPAIVELAEDRHWRVRLA 241
L ++L +D W VR+A
Sbjct: 117 LIKAL--------KDEDWFVRIA 131
>pdb|1YVH|A Chain A, Crystal Structure Of The C-Cbl Tkb Domain In Complex With
The Aps Ptyr-618 Phosphopeptide
pdb|3BUM|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty2
pdb|3BUN|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty4
pdb|3BUO|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUO|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUW|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUW|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUX|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3BUX|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3OB1|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Spry2 Peptide
pdb|3OB2|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Egfr Peptide
pdb|3PLF|B Chain B, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
pdb|3PLF|D Chain D, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
Length = 329
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 128 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALA 165
KV ++C+ NP+LA+++ P + +L D+ QH+R+ L+
Sbjct: 43 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTILS 78
>pdb|1B47|A Chain A, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|B Chain B, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|C Chain C, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
Length = 304
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 128 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD 178
KV ++C+ NP+LA+++ P + +L D+ QH+R+ L+ G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTILSRY-EGKMETLGEN 66
>pdb|2CBL|A Chain A, N-Terminal Domain Of Cbl In Complex With Its Binding Site
On Zap-70
Length = 305
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 128 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALA 165
KV ++C+ NP+LA+++ P + +L D+ QH+R+ L+
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTILS 54
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 128 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD 178
KV ++C+ NP+LA+++ P + +L D+ QH+R+ L+ G LG++
Sbjct: 21 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTILSRY-EGKMETLGEN 68
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 128 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD 178
KV ++C+ NP+LA+++ P + +L D+ QH+R+ L+ G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTILSRY-EGKMETLGEN 66
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 128 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD 178
KV ++C+ NP+LA+++ P + +L D+ QH+R+ L+ G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTILSRY-EGKMETLGEN 66
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 128 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD 178
KV ++C+ NP+LA+++ P + +L D+ QH+R+ L+ G LG++
Sbjct: 21 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTILSRY-EGKMETLGEN 68
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 201
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 24/140 (17%)
Query: 102 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVR 161
T + V Y++ L+D+ VR AAA + KI E A++ ++ +K D VR
Sbjct: 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKI----GDERAVEPLIKALK----DEDAWVR 62
Query: 162 SALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ 221
A A + +G + +E L + LKDE VR + L Q+ ++ L +
Sbjct: 63 RAAADAL----GQIGDERAVEPL----IKALKDEDGWVRQSAAVALGQIGDERAVEPLIK 114
Query: 222 SLLPAIVELAEDRHWRVRLA 241
+L +D W VR+A
Sbjct: 115 AL--------KDEDWFVRIA 126
>pdb|4DB5|A Chain A, Crystal Structure Of Rabbit Gitrl
Length = 125
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEA 119
P VN D W+++ ++ N LY + V P+PT P V+L ++ EA
Sbjct: 24 PSCVNKISD--WKLK-ILQNGLYIIYGQVAPDPTYKGFAPFEVQLCKNKEA 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,802,944
Number of Sequences: 62578
Number of extensions: 425361
Number of successful extensions: 1480
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1211
Number of HSP's gapped (non-prelim): 95
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)