Query 015150
Match_columns 412
No_of_seqs 228 out of 1490
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 03:35:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211 Protein phosphatase 2A 100.0 5.3E-37 1.1E-41 283.8 32.6 409 1-409 250-666 (759)
2 KOG0211 Protein phosphatase 2A 100.0 2E-30 4.4E-35 240.4 25.6 408 3-410 174-628 (759)
3 KOG2171 Karyopherin (importin) 100.0 3.1E-25 6.6E-30 207.9 39.1 410 1-411 93-553 (1075)
4 KOG2023 Nuclear transport rece 100.0 3E-26 6.6E-31 201.8 24.6 405 2-412 104-596 (885)
5 KOG2171 Karyopherin (importin) 99.9 1.1E-23 2.3E-28 197.7 40.1 410 1-411 50-508 (1075)
6 KOG2023 Nuclear transport rece 99.9 3E-24 6.4E-29 189.4 23.7 372 38-412 59-510 (885)
7 PRK13800 putative oxidoreducta 99.9 3.1E-22 6.7E-27 197.1 26.6 275 67-404 622-896 (897)
8 KOG1242 Protein containing ada 99.9 1.2E-19 2.5E-24 160.9 35.0 404 2-411 31-448 (569)
9 PRK09687 putative lyase; Provi 99.9 2.4E-21 5.2E-26 163.9 23.1 253 107-404 25-279 (280)
10 KOG1241 Karyopherin (importin) 99.9 2E-19 4.4E-24 161.6 32.3 409 2-411 104-715 (859)
11 KOG1241 Karyopherin (importin) 99.9 7.5E-19 1.6E-23 158.0 35.2 402 2-409 15-479 (859)
12 KOG0213 Splicing factor 3b, su 99.9 1.1E-19 2.4E-24 162.7 29.1 394 2-407 490-1065(1172)
13 PRK09687 putative lyase; Provi 99.9 2.2E-20 4.8E-25 158.0 22.9 254 67-365 24-279 (280)
14 PRK13800 putative oxidoreducta 99.9 6.2E-20 1.4E-24 181.0 27.1 275 28-365 622-896 (897)
15 PF01602 Adaptin_N: Adaptin N 99.9 1E-18 2.3E-23 165.3 29.8 390 2-406 93-523 (526)
16 KOG1242 Protein containing ada 99.9 5.9E-18 1.3E-22 150.2 31.3 378 1-385 109-499 (569)
17 COG5181 HSH155 U2 snRNP splice 99.8 2.3E-18 4.9E-23 151.5 25.2 393 2-407 295-870 (975)
18 KOG0213 Splicing factor 3b, su 99.8 2.5E-17 5.5E-22 147.8 31.7 383 13-405 706-1140(1172)
19 PF01602 Adaptin_N: Adaptin N 99.8 4.5E-17 9.8E-22 154.2 33.4 366 25-407 77-483 (526)
20 KOG0212 Uncharacterized conser 99.8 5.3E-17 1.2E-21 141.6 30.3 367 5-372 17-410 (675)
21 KOG1824 TATA-binding protein-i 99.8 5.4E-16 1.2E-20 142.8 36.7 410 1-411 60-603 (1233)
22 KOG1240 Protein kinase contain 99.8 4.1E-18 8.9E-23 160.2 21.9 309 28-349 423-745 (1431)
23 KOG0212 Uncharacterized conser 99.8 2.4E-17 5.2E-22 143.7 24.1 376 32-408 5-407 (675)
24 PLN03200 cellulose synthase-in 99.8 2.8E-16 6E-21 159.6 34.3 375 28-407 405-811 (2102)
25 PLN03200 cellulose synthase-in 99.8 3.6E-16 7.9E-21 158.8 33.1 401 2-407 418-860 (2102)
26 COG5181 HSH155 U2 snRNP splice 99.8 2E-16 4.4E-21 139.5 26.2 375 28-412 522-917 (975)
27 KOG1824 TATA-binding protein-i 99.8 2.5E-15 5.5E-20 138.5 34.2 402 3-407 189-722 (1233)
28 KOG1240 Protein kinase contain 99.8 1.4E-16 3.1E-21 150.1 23.1 279 119-410 437-728 (1431)
29 KOG0166 Karyopherin (importin) 99.7 2.2E-15 4.7E-20 133.3 26.2 342 68-409 68-438 (514)
30 KOG0915 Uncharacterized conser 99.7 8.6E-15 1.9E-19 141.3 31.5 391 1-392 831-1330(1702)
31 KOG0166 Karyopherin (importin) 99.7 2.2E-14 4.8E-19 127.1 30.5 377 29-405 68-484 (514)
32 COG5215 KAP95 Karyopherin (imp 99.7 1.8E-13 3.9E-18 120.1 34.8 409 2-411 108-715 (858)
33 PTZ00429 beta-adaptin; Provisi 99.7 3.6E-13 7.9E-18 127.7 38.8 307 28-350 106-416 (746)
34 COG5215 KAP95 Karyopherin (imp 99.7 8.2E-13 1.8E-17 116.1 36.4 366 2-372 19-441 (858)
35 PTZ00429 beta-adaptin; Provisi 99.7 3.7E-13 8.1E-18 127.7 36.3 345 27-389 68-416 (746)
36 PF10508 Proteasom_PSMB: Prote 99.7 2.2E-12 4.8E-17 119.4 35.7 377 30-406 41-461 (503)
37 PF10508 Proteasom_PSMB: Prote 99.6 2E-11 4.3E-16 113.1 35.0 358 6-364 56-461 (503)
38 KOG0915 Uncharacterized conser 99.6 9.6E-12 2.1E-16 120.8 31.9 400 4-408 973-1428(1702)
39 KOG4224 Armadillo repeat prote 99.5 2.2E-12 4.7E-17 107.5 20.4 380 26-406 84-492 (550)
40 KOG4224 Armadillo repeat prote 99.5 4.9E-13 1.1E-17 111.3 16.5 342 67-409 86-448 (550)
41 KOG1060 Vesicle coat complex A 99.5 2.5E-10 5.5E-15 104.4 30.7 169 32-212 40-209 (968)
42 KOG1060 Vesicle coat complex A 99.5 6.7E-11 1.5E-15 108.0 26.4 352 29-399 110-563 (968)
43 COG1413 FOG: HEAT repeat [Ener 99.5 5.4E-11 1.2E-15 105.8 25.0 278 66-405 43-333 (335)
44 COG1413 FOG: HEAT repeat [Ener 99.4 1.5E-10 3.2E-15 102.9 25.6 277 27-365 43-332 (335)
45 TIGR02270 conserved hypothetic 99.4 1.2E-10 2.6E-15 103.6 24.6 240 106-406 55-295 (410)
46 COG5064 SRP1 Karyopherin (impo 99.4 1.3E-10 2.9E-15 96.2 22.1 380 24-405 69-494 (526)
47 PF12348 CLASP_N: CLASP N term 99.4 2.9E-11 6.4E-16 101.1 18.4 186 223-411 8-210 (228)
48 KOG1943 Beta-tubulin folding c 99.4 8.1E-09 1.8E-13 98.0 35.4 384 23-409 337-839 (1133)
49 COG5064 SRP1 Karyopherin (impo 99.4 1.6E-11 3.6E-16 101.5 15.5 339 69-407 74-443 (526)
50 KOG2259 Uncharacterized conser 99.4 9.6E-10 2.1E-14 98.8 26.9 254 106-371 199-514 (823)
51 COG5240 SEC21 Vesicle coat com 99.4 6.3E-09 1.4E-13 92.3 30.6 220 181-406 262-554 (898)
52 KOG1243 Protein kinase [Genera 99.4 2.8E-11 6E-16 109.8 15.6 254 154-409 264-517 (690)
53 KOG1061 Vesicle coat complex A 99.3 8.9E-10 1.9E-14 101.2 24.7 356 29-399 88-520 (734)
54 TIGR02270 conserved hypothetic 99.3 1.7E-09 3.7E-14 96.4 23.3 240 28-328 55-295 (410)
55 KOG1243 Protein kinase [Genera 99.3 1.2E-10 2.6E-15 105.8 15.8 255 114-370 263-517 (690)
56 KOG1062 Vesicle coat complex A 99.3 1.6E-08 3.5E-13 93.1 29.0 370 27-410 107-547 (866)
57 PF12348 CLASP_N: CLASP N term 99.3 4.9E-10 1.1E-14 93.7 17.7 188 105-295 7-211 (228)
58 KOG1820 Microtubule-associated 99.2 1.5E-09 3.3E-14 103.3 19.6 189 220-412 251-448 (815)
59 KOG2259 Uncharacterized conser 99.2 1.4E-08 3.1E-13 91.5 23.4 242 116-366 169-473 (823)
60 KOG1059 Vesicle coat complex A 99.2 8.3E-07 1.8E-11 81.3 34.3 218 24-251 141-365 (877)
61 KOG1062 Vesicle coat complex A 99.2 1.1E-07 2.4E-12 87.9 27.6 290 69-372 110-418 (866)
62 KOG1020 Sister chromatid cohes 99.1 1.3E-06 2.8E-11 86.3 35.8 400 2-407 830-1405(1692)
63 KOG1943 Beta-tubulin folding c 99.1 1E-06 2.2E-11 84.3 34.1 403 2-407 355-881 (1133)
64 KOG1020 Sister chromatid cohes 99.1 5.2E-06 1.1E-10 82.2 37.8 377 25-404 814-1292(1692)
65 KOG1059 Vesicle coat complex A 99.1 1.5E-06 3.3E-11 79.6 31.5 217 63-290 141-365 (877)
66 KOG1061 Vesicle coat complex A 99.1 5.2E-08 1.1E-12 89.9 21.7 361 26-401 48-483 (734)
67 COG5096 Vesicle coat complex, 99.1 3.1E-06 6.6E-11 79.9 33.1 140 26-172 54-194 (757)
68 PF12460 MMS19_C: RNAPII trans 99.1 6.3E-06 1.4E-10 75.2 34.8 352 30-385 2-413 (415)
69 COG5240 SEC21 Vesicle coat com 99.0 1.9E-07 4E-12 83.3 22.5 293 23-327 260-553 (898)
70 KOG1248 Uncharacterized conser 99.0 2.1E-05 4.6E-10 76.5 37.1 349 25-376 516-906 (1176)
71 KOG1077 Vesicle coat complex A 99.0 3.4E-06 7.5E-11 77.2 29.5 114 24-139 108-221 (938)
72 KOG1248 Uncharacterized conser 99.0 4.3E-05 9.4E-10 74.4 38.5 345 64-411 516-902 (1176)
73 KOG1058 Vesicle coat complex C 99.0 2.4E-06 5.2E-11 78.7 28.4 357 30-408 102-464 (948)
74 KOG1077 Vesicle coat complex A 99.0 6.5E-06 1.4E-10 75.4 29.7 253 140-403 325-583 (938)
75 COG5096 Vesicle coat complex, 98.9 7.6E-06 1.6E-10 77.4 31.3 175 28-213 19-196 (757)
76 PF12755 Vac14_Fab1_bd: Vacuol 98.9 1.2E-08 2.5E-13 71.1 9.7 87 317-404 3-93 (97)
77 KOG2137 Protein kinase [Signal 98.9 2E-07 4.4E-12 85.6 19.4 239 156-397 285-527 (700)
78 KOG0567 HEAT repeat-containing 98.9 5.6E-07 1.2E-11 72.6 18.6 220 147-406 39-279 (289)
79 KOG1991 Nuclear transport rece 98.9 0.0001 2.2E-09 70.6 37.7 397 2-409 18-534 (1010)
80 PF12755 Vac14_Fab1_bd: Vacuol 98.9 1.8E-08 4E-13 70.1 8.3 83 43-125 2-88 (97)
81 PF13646 HEAT_2: HEAT repeats; 98.8 2.6E-08 5.5E-13 69.5 8.5 86 302-403 1-88 (88)
82 KOG1058 Vesicle coat complex C 98.8 3.5E-05 7.5E-10 71.4 30.3 360 25-408 55-426 (948)
83 PF05804 KAP: Kinesin-associat 98.8 3.3E-05 7.1E-10 73.6 30.8 369 32-408 255-650 (708)
84 KOG1820 Microtubule-associated 98.8 6.6E-07 1.4E-11 85.7 19.7 337 28-375 64-450 (815)
85 KOG2032 Uncharacterized conser 98.8 3.8E-05 8.3E-10 67.8 27.9 255 146-407 260-531 (533)
86 PF12460 MMS19_C: RNAPII trans 98.8 4.4E-05 9.6E-10 69.7 29.9 288 118-407 56-394 (415)
87 KOG2032 Uncharacterized conser 98.8 1.3E-05 2.7E-10 70.7 24.3 253 28-290 259-531 (533)
88 KOG4413 26S proteasome regulat 98.8 7.5E-05 1.6E-09 62.5 28.9 339 8-368 63-439 (524)
89 KOG1078 Vesicle coat complex C 98.8 3.9E-05 8.4E-10 71.4 28.1 251 144-406 245-531 (865)
90 KOG0413 Uncharacterized conser 98.8 2.3E-05 5.1E-10 74.4 27.0 129 275-408 945-1074(1529)
91 PF13646 HEAT_2: HEAT repeats; 98.7 5.2E-08 1.1E-12 67.9 7.8 85 69-169 2-88 (88)
92 PF12717 Cnd1: non-SMC mitotic 98.7 2.2E-06 4.7E-11 68.3 17.7 110 41-153 2-111 (178)
93 PF05804 KAP: Kinesin-associat 98.7 7.9E-05 1.7E-09 71.1 30.5 352 24-385 287-676 (708)
94 PF04826 Arm_2: Armadillo-like 98.7 3E-06 6.6E-11 70.7 18.6 189 106-294 13-209 (254)
95 KOG2137 Protein kinase [Signal 98.7 2E-06 4.4E-11 79.3 18.6 233 117-352 285-521 (700)
96 PF04826 Arm_2: Armadillo-like 98.7 2.6E-06 5.7E-11 71.1 17.2 213 186-398 15-253 (254)
97 PF12717 Cnd1: non-SMC mitotic 98.7 4E-06 8.7E-11 66.7 16.8 109 1-112 1-109 (178)
98 KOG4653 Uncharacterized conser 98.7 6E-06 1.3E-10 77.3 20.0 177 151-333 734-922 (982)
99 KOG4535 HEAT and armadillo rep 98.6 1.4E-05 3.1E-10 70.1 20.6 251 1-251 120-462 (728)
100 cd00020 ARM Armadillo/beta-cat 98.6 3.2E-07 6.9E-12 68.2 9.3 107 300-406 7-119 (120)
101 KOG2025 Chromosome condensatio 98.6 1.5E-05 3.3E-10 73.2 20.9 170 22-203 36-213 (892)
102 KOG1991 Nuclear transport rece 98.6 0.00074 1.6E-08 64.9 36.0 346 4-354 105-562 (1010)
103 KOG2025 Chromosome condensatio 98.6 7.8E-05 1.7E-09 68.7 24.9 203 182-404 84-291 (892)
104 KOG4413 26S proteasome regulat 98.6 6.6E-05 1.4E-09 62.9 22.4 283 46-331 62-379 (524)
105 PF05918 API5: Apoptosis inhib 98.6 0.00014 3E-09 66.9 26.6 260 2-270 36-315 (556)
106 cd00020 ARM Armadillo/beta-cat 98.6 8.8E-07 1.9E-11 65.8 10.2 107 261-367 7-119 (120)
107 KOG2956 CLIP-associating prote 98.6 9.4E-06 2E-10 71.0 17.3 191 67-262 288-488 (516)
108 KOG1992 Nuclear export recepto 98.5 0.00086 1.9E-08 63.2 30.4 360 2-368 19-527 (960)
109 KOG4535 HEAT and armadillo rep 98.5 2.8E-05 6.1E-10 68.3 19.7 406 2-407 10-559 (728)
110 KOG0414 Chromosome condensatio 98.5 0.0014 3.1E-08 64.2 34.8 144 258-407 916-1064(1251)
111 KOG1967 DNA repair/transcripti 98.4 0.00096 2.1E-08 63.7 28.6 147 221-367 866-1023(1030)
112 KOG0567 HEAT repeat-containing 98.4 3.2E-05 6.9E-10 62.7 16.0 89 262-366 188-278 (289)
113 KOG1293 Proteins containing ar 98.4 0.0015 3.3E-08 60.1 29.5 382 24-406 92-532 (678)
114 KOG1078 Vesicle coat complex C 98.4 0.0011 2.3E-08 62.3 27.2 288 64-367 243-531 (865)
115 KOG1992 Nuclear export recepto 98.4 0.0012 2.6E-08 62.3 27.6 341 28-372 362-754 (960)
116 KOG2062 26S proteasome regulat 98.4 6.4E-05 1.4E-09 69.6 19.3 156 107-276 521-680 (929)
117 KOG0168 Putative ubiquitin fus 98.4 0.0023 4.9E-08 60.8 29.0 189 27-215 168-367 (1051)
118 KOG0413 Uncharacterized conser 98.4 0.00039 8.4E-09 66.5 24.1 143 238-385 947-1090(1529)
119 PF05004 IFRD: Interferon-rela 98.3 0.00022 4.8E-09 61.9 20.7 178 232-409 53-259 (309)
120 PF05918 API5: Apoptosis inhib 98.3 0.00048 1.1E-08 63.5 23.6 259 108-374 26-303 (556)
121 KOG2062 26S proteasome regulat 98.3 0.00024 5.3E-09 65.9 21.1 156 145-314 520-679 (929)
122 PF13513 HEAT_EZ: HEAT-like re 98.3 1.6E-06 3.5E-11 54.0 5.2 52 314-365 1-54 (55)
123 PF05004 IFRD: Interferon-rela 98.3 0.00093 2E-08 58.1 23.8 183 109-292 47-259 (309)
124 KOG2956 CLIP-associating prote 98.3 0.00012 2.6E-09 64.3 18.1 189 27-219 287-484 (516)
125 KOG4653 Uncharacterized conser 98.3 0.00017 3.6E-09 68.1 19.5 183 68-256 729-923 (982)
126 KOG1822 Uncharacterized conser 98.3 0.0047 1E-07 63.7 30.2 212 2-213 890-1128(2067)
127 PF13001 Ecm29: Proteasome sta 98.2 0.00088 1.9E-08 62.6 23.8 370 25-404 21-485 (501)
128 PF13513 HEAT_EZ: HEAT-like re 98.2 2.7E-06 5.7E-11 53.0 4.8 53 353-405 1-55 (55)
129 KOG1949 Uncharacterized conser 98.2 0.00033 7.2E-09 64.7 19.2 145 107-251 176-331 (1005)
130 KOG1525 Sister chromatid cohes 98.2 0.0041 9E-08 63.2 28.2 327 74-408 58-406 (1266)
131 KOG0168 Putative ubiquitin fus 98.2 0.0015 3.3E-08 61.9 23.2 152 25-176 209-367 (1051)
132 COG5218 YCG1 Chromosome conden 98.2 0.0016 3.5E-08 59.2 22.4 172 181-366 89-264 (885)
133 KOG1949 Uncharacterized conser 98.1 0.0014 3.1E-08 60.8 21.7 145 184-328 175-330 (1005)
134 PF14500 MMS19_N: Dos2-interac 98.1 0.0024 5.2E-08 54.0 21.9 143 32-176 4-156 (262)
135 PF13001 Ecm29: Proteasome sta 98.1 0.0027 5.8E-08 59.5 23.8 342 65-410 22-446 (501)
136 KOG1525 Sister chromatid cohes 98.1 0.016 3.4E-07 59.2 29.7 351 6-369 20-406 (1266)
137 KOG1293 Proteins containing ar 98.0 0.0071 1.5E-07 55.9 24.1 303 67-369 182-534 (678)
138 PF14500 MMS19_N: Dos2-interac 98.0 0.0058 1.3E-07 51.6 22.3 222 152-378 7-247 (262)
139 PF02985 HEAT: HEAT repeat; I 98.0 1.1E-05 2.3E-10 43.1 3.9 28 68-95 2-29 (31)
140 PF02985 HEAT: HEAT repeat; I 98.0 1.1E-05 2.4E-10 43.1 3.9 30 106-135 1-30 (31)
141 COG5218 YCG1 Chromosome conden 98.0 0.011 2.5E-07 53.9 27.8 212 22-247 41-262 (885)
142 KOG1517 Guanine nucleotide bin 98.0 0.00081 1.8E-08 65.1 17.3 226 101-328 468-731 (1387)
143 PLN03076 ARF guanine nucleotid 98.0 0.027 5.8E-07 60.0 29.8 304 43-346 1108-1509(1780)
144 PF01347 Vitellogenin_N: Lipop 98.0 0.0015 3.2E-08 63.6 20.2 162 223-402 432-617 (618)
145 PF12719 Cnd3: Nuclear condens 97.9 0.0082 1.8E-07 52.3 22.1 213 192-407 36-285 (298)
146 PLN03076 ARF guanine nucleotid 97.9 0.036 7.8E-07 59.1 29.9 289 83-372 1109-1493(1780)
147 KOG2274 Predicted importin 9 [ 97.9 0.025 5.4E-07 54.4 34.8 74 24-98 87-160 (1005)
148 PF12719 Cnd3: Nuclear condens 97.9 0.0088 1.9E-07 52.1 22.1 163 69-233 30-208 (298)
149 KOG1967 DNA repair/transcripti 97.9 0.001 2.2E-08 63.5 16.7 141 144-284 867-1018(1030)
150 KOG0414 Chromosome condensatio 97.8 0.00075 1.6E-08 66.1 15.1 148 176-329 912-1064(1251)
151 KOG1517 Guanine nucleotide bin 97.8 0.0011 2.5E-08 64.1 15.9 207 5-212 487-732 (1387)
152 KOG2021 Nuclear mRNA export fa 97.8 0.033 7.1E-07 52.6 34.7 133 197-333 413-568 (980)
153 PF08506 Cse1: Cse1; InterPro 97.8 0.005 1.1E-07 54.9 18.7 126 274-402 224-370 (370)
154 smart00638 LPD_N Lipoprotein N 97.8 0.0068 1.5E-07 58.4 21.2 166 222-402 393-573 (574)
155 COG5116 RPN2 26S proteasome re 97.7 0.0044 9.6E-08 56.3 17.3 155 107-275 518-676 (926)
156 KOG2933 Uncharacterized conser 97.7 0.0033 7.2E-08 52.7 15.0 169 224-397 90-267 (334)
157 COG5098 Chromosome condensatio 97.7 0.048 1E-06 51.1 30.8 141 261-407 892-1037(1128)
158 COG5116 RPN2 26S proteasome re 97.7 0.00067 1.5E-08 61.3 11.6 155 29-197 518-676 (926)
159 PF11864 DUF3384: Domain of un 97.6 0.053 1.2E-06 50.5 31.4 391 4-405 6-464 (464)
160 PF01347 Vitellogenin_N: Lipop 97.6 0.015 3.3E-07 56.7 21.4 219 78-323 376-616 (618)
161 KOG0946 ER-Golgi vesicle-tethe 97.5 0.097 2.1E-06 49.9 29.8 255 104-360 121-429 (970)
162 KOG2933 Uncharacterized conser 97.5 0.0047 1E-07 51.8 12.9 172 105-281 88-268 (334)
163 KOG1851 Uncharacterized conser 97.4 0.2 4.3E-06 51.7 27.2 141 231-373 1536-1683(1710)
164 KOG1822 Uncharacterized conser 97.4 0.21 4.6E-06 52.4 25.7 287 4-291 800-1128(2067)
165 smart00638 LPD_N Lipoprotein N 97.3 0.073 1.6E-06 51.4 21.5 165 183-363 393-573 (574)
166 COG5656 SXM1 Importin, protein 97.3 0.18 3.9E-06 47.9 28.3 308 103-411 406-761 (970)
167 PF12054 DUF3535: Domain of un 97.2 0.067 1.5E-06 49.1 18.9 76 42-117 102-180 (441)
168 PF10363 DUF2435: Protein of u 97.2 0.0053 1.1E-07 42.4 8.8 80 32-116 8-88 (92)
169 KOG0392 SNF2 family DNA-depend 97.2 0.011 2.4E-07 58.8 14.0 172 197-369 143-326 (1549)
170 PF10363 DUF2435: Protein of u 97.2 0.0038 8.3E-08 43.1 7.9 84 67-155 4-88 (92)
171 PF11865 DUF3385: Domain of un 97.1 0.0036 7.8E-08 48.6 8.4 138 220-368 8-157 (160)
172 KOG2011 Sister chromatid cohes 97.1 0.12 2.5E-06 51.5 19.9 231 3-247 170-431 (1048)
173 cd00256 VATPase_H VATPase_H, r 97.1 0.23 4.9E-06 45.1 24.6 171 3-173 69-258 (429)
174 PF12530 DUF3730: Protein of u 97.0 0.16 3.6E-06 42.4 19.1 187 2-196 15-216 (234)
175 PF13251 DUF4042: Domain of un 97.0 0.035 7.5E-07 43.8 12.8 125 266-408 45-175 (182)
176 PF10274 ParcG: Parkin co-regu 96.9 0.021 4.5E-07 44.8 10.9 90 259-348 36-133 (183)
177 PF10274 ParcG: Parkin co-regu 96.9 0.038 8.2E-07 43.3 12.3 75 220-294 36-116 (183)
178 KOG2160 Armadillo/beta-catenin 96.9 0.12 2.5E-06 44.8 16.2 174 234-407 95-282 (342)
179 KOG1993 Nuclear transport rece 96.9 0.43 9.3E-06 45.8 30.9 223 182-407 430-685 (978)
180 PF08506 Cse1: Cse1; InterPro 96.9 0.3 6.5E-06 43.8 22.2 125 236-363 225-370 (370)
181 PF13251 DUF4042: Domain of un 96.9 0.015 3.3E-07 45.8 10.0 56 3-58 1-71 (182)
182 KOG2160 Armadillo/beta-catenin 96.9 0.26 5.7E-06 42.7 19.7 177 116-292 94-284 (342)
183 KOG2011 Sister chromatid cohes 96.9 0.38 8.3E-06 48.1 21.2 233 81-325 170-431 (1048)
184 PF10521 DUF2454: Protein of u 96.8 0.16 3.6E-06 43.8 16.9 132 220-351 117-277 (282)
185 COG5656 SXM1 Importin, protein 96.8 0.51 1.1E-05 45.1 28.3 289 43-334 432-762 (970)
186 PF14664 RICTOR_N: Rapamycin-i 96.8 0.37 8.1E-06 43.2 23.8 153 22-174 20-177 (371)
187 KOG2274 Predicted importin 9 [ 96.8 0.61 1.3E-05 45.5 30.2 233 115-349 460-718 (1005)
188 PF11865 DUF3385: Domain of un 96.7 0.014 3.1E-07 45.3 8.9 142 63-213 7-158 (160)
189 PF08713 DNA_alkylation: DNA a 96.7 0.067 1.5E-06 44.1 13.4 130 29-173 53-184 (213)
190 PF12054 DUF3535: Domain of un 96.7 0.17 3.6E-06 46.6 16.6 73 4-76 103-178 (441)
191 KOG0946 ER-Golgi vesicle-tethe 96.7 0.65 1.4E-05 44.7 24.7 266 119-406 37-345 (970)
192 KOG4524 Uncharacterized conser 96.7 0.78 1.7E-05 45.2 28.2 93 299-391 802-902 (1014)
193 KOG2213 Apoptosis inhibitor 5/ 96.5 0.48 1.1E-05 41.5 21.2 244 43-293 40-317 (460)
194 KOG0392 SNF2 family DNA-depend 96.5 0.96 2.1E-05 46.0 21.1 170 121-292 749-927 (1549)
195 cd00256 VATPase_H VATPase_H, r 96.5 0.61 1.3E-05 42.4 26.1 335 49-406 56-424 (429)
196 PF12074 DUF3554: Domain of un 96.5 0.18 3.8E-06 45.1 15.4 88 3-95 2-90 (339)
197 PF04118 Dopey_N: Dopey, N-ter 96.5 0.21 4.5E-06 43.3 14.8 166 197-368 69-254 (307)
198 PF11864 DUF3384: Domain of un 96.5 0.78 1.7E-05 42.9 29.1 244 2-255 43-335 (464)
199 PF12074 DUF3554: Domain of un 96.5 0.59 1.3E-05 41.7 18.4 106 43-153 3-112 (339)
200 KOG2973 Uncharacterized conser 96.4 0.48 1.1E-05 40.2 18.8 58 350-407 255-315 (353)
201 KOG0889 Histone acetyltransfer 96.4 0.31 6.7E-06 54.4 18.6 262 27-291 984-1307(3550)
202 KOG2081 Nuclear transport regu 96.4 0.77 1.7E-05 42.4 32.2 293 67-368 154-495 (559)
203 PF08389 Xpo1: Exportin 1-like 96.4 0.085 1.8E-06 40.5 11.4 141 2-168 2-148 (148)
204 PF10521 DUF2454: Protein of u 96.4 0.047 1E-06 47.1 10.8 75 61-135 114-204 (282)
205 KOG2022 Nuclear transport rece 96.3 1.3 2.8E-05 43.4 33.9 358 5-371 441-870 (982)
206 PF01603 B56: Protein phosphat 96.3 0.91 2E-05 41.6 22.7 253 153-407 99-370 (409)
207 PF12530 DUF3730: Protein of u 96.1 0.66 1.4E-05 38.8 22.2 200 191-399 9-224 (234)
208 KOG0891 DNA-dependent protein 96.1 2.7 5.8E-05 46.7 23.5 250 30-287 484-760 (2341)
209 KOG1993 Nuclear transport rece 96.1 1.5 3.2E-05 42.5 24.6 238 116-356 454-716 (978)
210 KOG2021 Nuclear mRNA export fa 96.0 1.5 3.3E-05 42.1 36.7 307 74-387 201-585 (980)
211 PF01603 B56: Protein phosphat 95.9 1.3 2.9E-05 40.5 23.1 251 75-329 99-370 (409)
212 PF11698 V-ATPase_H_C: V-ATPas 95.8 0.058 1.3E-06 38.9 7.1 68 28-95 44-115 (119)
213 PF05536 Neurochondrin: Neuroc 95.8 1.8 4E-05 41.2 29.0 178 117-297 69-268 (543)
214 cd08050 TAF6 TATA Binding Prot 95.8 0.3 6.5E-06 43.4 13.0 135 187-328 182-339 (343)
215 PF03378 CAS_CSE1: CAS/CSE pro 95.7 1.7 3.7E-05 40.0 18.1 217 38-256 41-277 (435)
216 COG5098 Chromosome condensatio 95.7 2.1 4.5E-05 40.9 25.9 103 70-172 303-414 (1128)
217 PF08161 NUC173: NUC173 domain 95.7 0.6 1.3E-05 37.7 13.1 160 242-405 20-197 (198)
218 PF08167 RIX1: rRNA processing 95.7 0.63 1.4E-05 36.5 13.0 112 259-372 23-147 (165)
219 PF08389 Xpo1: Exportin 1-like 95.5 0.8 1.7E-05 35.0 13.6 141 80-245 2-147 (148)
220 PF14664 RICTOR_N: Rapamycin-i 95.5 1.8 3.9E-05 39.0 20.4 221 145-367 26-268 (371)
221 KOG0889 Histone acetyltransfer 95.5 3.6 7.8E-05 46.8 21.3 281 105-386 984-1327(3550)
222 cd03568 VHS_STAM VHS domain fa 95.5 0.27 5.9E-06 37.4 10.0 98 231-334 13-115 (144)
223 PF03378 CAS_CSE1: CAS/CSE pro 95.3 2.3 5.1E-05 39.2 20.0 215 156-372 42-276 (435)
224 KOG1048 Neural adherens juncti 95.3 3.1 6.6E-05 40.3 23.6 367 29-407 235-684 (717)
225 PF11701 UNC45-central: Myosin 95.2 0.13 2.8E-06 39.9 7.7 130 1-131 18-156 (157)
226 PF08167 RIX1: rRNA processing 95.1 1.3 2.7E-05 34.8 13.2 111 221-333 24-147 (165)
227 PF12830 Nipped-B_C: Sister ch 95.0 1.5 3.3E-05 35.2 15.2 70 65-136 7-76 (187)
228 KOG1848 Uncharacterized conser 95.0 1.6 3.5E-05 44.9 15.9 209 3-211 857-1131(1610)
229 cd08050 TAF6 TATA Binding Prot 94.9 0.89 1.9E-05 40.5 13.0 133 149-288 183-338 (343)
230 PF03224 V-ATPase_H_N: V-ATPas 94.8 2.6 5.6E-05 37.1 20.0 172 225-396 108-303 (312)
231 PF04118 Dopey_N: Dopey, N-ter 94.8 2.5 5.4E-05 36.8 18.0 125 237-367 70-200 (307)
232 PF12765 Cohesin_HEAT: HEAT re 94.6 0.045 9.8E-07 31.4 2.8 25 104-128 17-41 (42)
233 PF11701 UNC45-central: Myosin 94.5 0.59 1.3E-05 36.3 9.8 126 116-242 16-150 (157)
234 KOG2549 Transcription initiati 94.5 1.9 4.1E-05 39.9 13.8 136 186-328 210-369 (576)
235 KOG2149 Uncharacterized conser 94.4 0.68 1.5E-05 40.9 10.6 108 266-373 63-175 (393)
236 PF07571 DUF1546: Protein of u 94.4 0.26 5.5E-06 34.2 6.6 69 272-344 17-89 (92)
237 KOG4500 Rho/Rac GTPase guanine 94.3 3.8 8.3E-05 36.8 30.2 147 260-406 314-474 (604)
238 KOG0803 Predicted E3 ubiquitin 94.3 8.4 0.00018 40.6 21.0 239 71-310 46-330 (1312)
239 KOG1848 Uncharacterized conser 94.2 8.2 0.00018 40.2 22.0 245 111-368 848-1132(1610)
240 KOG2213 Apoptosis inhibitor 5/ 94.2 3.8 8.3E-05 36.3 18.5 243 5-254 41-317 (460)
241 cd03567 VHS_GGA VHS domain fam 94.2 1.8 4E-05 32.6 11.4 97 231-333 14-120 (139)
242 PF11698 V-ATPase_H_C: V-ATPas 94.1 0.4 8.8E-06 34.7 7.4 68 223-290 44-115 (119)
243 PF07571 DUF1546: Protein of u 94.1 0.18 3.9E-06 34.9 5.5 70 311-384 17-90 (92)
244 PF08767 CRM1_C: CRM1 C termin 94.0 4 8.6E-05 36.0 15.8 136 3-138 42-198 (319)
245 PF08161 NUC173: NUC173 domain 94.0 2.7 5.9E-05 34.0 13.6 28 338-366 170-197 (198)
246 cd03569 VHS_Hrs_Vps27p VHS dom 94.0 1.8 3.8E-05 32.9 11.1 97 232-334 18-119 (142)
247 COG5537 IRR1 Cohesin [Cell div 94.0 5.5 0.00012 37.4 16.3 145 262-409 276-424 (740)
248 PF08713 DNA_alkylation: DNA a 94.0 3 6.4E-05 34.3 15.2 130 186-330 54-185 (213)
249 PF12830 Nipped-B_C: Sister ch 93.8 2.4 5.2E-05 34.0 12.3 72 220-293 6-77 (187)
250 PF00514 Arm: Armadillo/beta-c 93.8 0.13 2.9E-06 29.2 3.7 29 339-367 12-40 (41)
251 PF00514 Arm: Armadillo/beta-c 93.8 0.15 3.3E-06 29.0 4.0 32 375-406 9-40 (41)
252 KOG2549 Transcription initiati 93.7 3.7 8E-05 38.1 14.1 56 335-390 284-351 (576)
253 KOG2149 Uncharacterized conser 93.6 2.6 5.6E-05 37.5 12.7 112 107-218 60-176 (393)
254 PF08569 Mo25: Mo25-like; Int 93.6 4.9 0.00011 35.6 21.4 186 221-408 75-284 (335)
255 KOG2005 26S proteasome regulat 93.5 7.3 0.00016 37.2 19.2 249 104-371 451-707 (878)
256 PF12765 Cohesin_HEAT: HEAT re 93.4 0.15 3.3E-06 29.2 3.5 26 64-89 16-41 (42)
257 KOG0891 DNA-dependent protein 93.4 16 0.00036 41.1 23.2 253 110-366 486-761 (2341)
258 smart00288 VHS Domain present 93.4 1.5 3.2E-05 32.9 9.8 96 231-332 13-114 (133)
259 cd03568 VHS_STAM VHS domain fa 93.4 2.7 6E-05 31.9 11.4 74 65-138 36-114 (144)
260 cd03561 VHS VHS domain family; 93.3 2 4.3E-05 32.2 10.4 96 232-333 14-116 (133)
261 PF08623 TIP120: TATA-binding 93.2 0.52 1.1E-05 36.7 7.1 57 78-135 39-95 (169)
262 cd03567 VHS_GGA VHS domain fam 93.1 2.9 6.4E-05 31.5 11.2 74 299-372 37-120 (139)
263 PF12231 Rif1_N: Rap1-interact 93.1 6.6 0.00014 35.6 26.6 231 79-330 59-304 (372)
264 KOG0803 Predicted E3 ubiquitin 93.1 14 0.00029 39.1 18.9 198 194-391 52-289 (1312)
265 KOG1048 Neural adherens juncti 93.0 9.4 0.0002 37.1 21.1 97 310-406 529-640 (717)
266 COG5537 IRR1 Cohesin [Cell div 93.0 7.1 0.00015 36.8 14.8 129 109-241 279-412 (740)
267 KOG2022 Nuclear transport rece 92.9 10 0.00023 37.5 33.6 362 43-410 440-870 (982)
268 PF05536 Neurochondrin: Neuroc 92.7 9.5 0.00021 36.5 30.9 223 32-255 10-265 (543)
269 PF00790 VHS: VHS domain; Int 92.6 3.1 6.7E-05 31.6 10.7 75 298-372 40-122 (140)
270 KOG2005 26S proteasome regulat 92.5 4.7 0.0001 38.4 13.2 73 330-406 631-703 (878)
271 KOG2759 Vacuolar H+-ATPase V1 92.5 7.8 0.00017 34.8 28.2 69 339-407 366-438 (442)
272 KOG2081 Nuclear transport regu 92.4 9.3 0.0002 35.7 33.3 294 105-407 153-495 (559)
273 cd03561 VHS VHS domain family; 92.4 2.6 5.6E-05 31.6 9.9 95 310-410 14-115 (133)
274 cd03569 VHS_Hrs_Vps27p VHS dom 92.3 3.7 7.9E-05 31.2 10.6 75 299-373 40-119 (142)
275 PF03224 V-ATPase_H_N: V-ATPas 92.1 8 0.00017 34.1 19.6 61 73-133 112-178 (312)
276 KOG4500 Rho/Rac GTPase guanine 91.9 9.3 0.0002 34.5 30.6 366 2-368 56-475 (604)
277 PF08569 Mo25: Mo25-like; Int 91.2 10 0.00022 33.6 24.5 208 181-390 74-313 (335)
278 cd03565 VHS_Tom1 VHS domain fa 91.1 5.4 0.00012 30.3 10.6 98 231-334 14-120 (141)
279 PF08623 TIP120: TATA-binding 91.1 0.95 2.1E-05 35.3 6.4 58 38-96 38-95 (169)
280 cd07064 AlkD_like_1 A new stru 91.0 7.6 0.00016 31.8 17.1 133 27-174 46-180 (208)
281 cd03572 ENTH_epsin_related ENT 91.0 4.1 8.8E-05 29.9 9.1 70 337-406 36-118 (122)
282 KOG1851 Uncharacterized conser 91.0 24 0.00053 37.6 26.1 76 19-96 1192-1267(1710)
283 COG5095 TAF6 Transcription ini 91.0 6.3 0.00014 33.6 11.3 130 192-328 207-358 (450)
284 PF14868 DUF4487: Domain of un 90.8 15 0.00033 35.0 22.8 83 208-291 466-553 (559)
285 PF14225 MOR2-PAG1_C: Cell mor 90.8 9.4 0.0002 32.5 12.8 139 262-410 112-257 (262)
286 smart00288 VHS Domain present 90.7 2.6 5.6E-05 31.6 8.3 74 299-372 36-115 (133)
287 PF08767 CRM1_C: CRM1 C termin 90.7 11 0.00025 33.2 20.1 135 160-294 43-198 (319)
288 cd06561 AlkD_like A new struct 90.6 7.9 0.00017 31.3 16.5 64 108-174 108-171 (197)
289 PF12397 U3snoRNP10: U3 small 90.6 5.3 0.00012 29.3 11.3 71 220-292 4-76 (121)
290 COG5101 CRM1 Importin beta-rel 90.3 17 0.00038 34.7 18.8 152 142-293 479-651 (1053)
291 PF08064 UME: UME (NUC010) dom 90.2 4.7 0.0001 28.8 8.9 62 312-375 27-90 (107)
292 COG5234 CIN1 Beta-tubulin fold 90.1 19 0.00041 34.8 18.9 68 334-406 686-757 (993)
293 COG5234 CIN1 Beta-tubulin fold 90.0 19 0.00042 34.8 18.0 68 294-366 685-756 (993)
294 PF08064 UME: UME (NUC010) dom 89.8 5.7 0.00012 28.4 10.4 63 195-259 27-91 (107)
295 PF00790 VHS: VHS domain; Int 89.3 7.9 0.00017 29.3 12.0 75 260-334 41-123 (140)
296 cd00197 VHS_ENTH_ANTH VHS, ENT 88.9 6.9 0.00015 28.4 9.3 35 300-334 37-71 (115)
297 smart00567 EZ_HEAT E-Z type HE 88.8 0.55 1.2E-05 24.4 2.5 29 80-116 1-29 (30)
298 COG5095 TAF6 Transcription ini 88.1 14 0.0003 31.6 11.2 97 270-373 207-321 (450)
299 smart00567 EZ_HEAT E-Z type HE 87.8 1.1 2.3E-05 23.3 3.2 28 354-389 2-29 (30)
300 KOG4646 Uncharacterized conser 87.7 9.7 0.00021 28.4 10.0 136 271-406 27-169 (173)
301 KOG2973 Uncharacterized conser 87.6 18 0.00038 31.3 20.0 100 71-173 8-111 (353)
302 cd03572 ENTH_epsin_related ENT 87.5 5.8 0.00013 29.1 7.8 35 104-138 37-71 (122)
303 PF12612 TFCD_C: Tubulin foldi 87.3 7 0.00015 31.6 9.2 28 262-289 8-35 (193)
304 KOG2199 Signal transducing ada 87.2 5.8 0.00013 35.1 8.8 99 230-334 20-123 (462)
305 COG5101 CRM1 Importin beta-rel 87.1 29 0.00063 33.3 25.8 156 60-215 475-651 (1053)
306 KOG4524 Uncharacterized conser 87.0 36 0.00079 34.3 26.2 92 220-311 801-900 (1014)
307 KOG1837 Uncharacterized conser 87.0 11 0.00023 40.0 11.8 75 64-138 1539-1615(1621)
308 KOG3678 SARM protein (with ste 86.6 15 0.00034 33.5 11.3 146 262-407 181-336 (832)
309 PF14225 MOR2-PAG1_C: Cell mor 86.4 20 0.00043 30.6 18.1 166 64-237 62-243 (262)
310 PF09324 DUF1981: Domain of un 86.0 4.7 0.0001 27.5 6.4 67 298-364 15-84 (86)
311 PF12231 Rif1_N: Rap1-interact 85.9 27 0.00058 31.7 30.5 72 335-406 270-351 (372)
312 PF14222 MOR2-PAG1_N: Cell mor 85.4 36 0.00078 32.7 20.2 28 106-135 223-250 (552)
313 smart00185 ARM Armadillo/beta- 85.3 1.4 3E-05 24.7 3.1 28 340-367 13-40 (41)
314 COG2733 Predicted membrane pro 84.9 28 0.00061 31.1 23.5 238 2-253 77-332 (415)
315 KOG2759 Vacuolar H+-ATPase V1 84.5 31 0.00067 31.2 22.6 67 262-328 367-437 (442)
316 KOG3678 SARM protein (with ste 84.5 33 0.00071 31.5 17.6 165 2-173 162-336 (832)
317 PF09324 DUF1981: Domain of un 84.4 5 0.00011 27.4 5.9 64 66-129 17-83 (86)
318 COG5369 Uncharacterized conser 84.0 4.2 9.1E-05 37.7 6.8 109 260-368 430-545 (743)
319 smart00185 ARM Armadillo/beta- 83.5 2.1 4.5E-05 23.9 3.3 30 377-406 11-40 (41)
320 cd00197 VHS_ENTH_ANTH VHS, ENT 82.9 16 0.00034 26.5 9.9 36 221-256 36-71 (115)
321 COG5369 Uncharacterized conser 82.9 5.4 0.00012 37.0 7.0 106 67-172 432-544 (743)
322 cd03565 VHS_Tom1 VHS domain fa 81.8 20 0.00044 27.1 10.3 35 300-334 38-73 (141)
323 COG5110 RPN1 26S proteasome re 81.5 48 0.001 31.3 20.5 83 299-383 449-531 (881)
324 PF03130 HEAT_PBS: PBS lyase H 81.3 1 2.2E-05 22.8 1.2 14 355-368 1-14 (27)
325 KOG1087 Cytosolic sorting prot 81.1 18 0.0004 33.6 9.9 98 230-333 13-116 (470)
326 PF12397 U3snoRNP10: U3 small 80.7 20 0.00043 26.3 11.7 72 258-331 3-76 (121)
327 PF04078 Rcd1: Cell differenti 80.0 36 0.00077 28.8 11.8 72 63-134 92-168 (262)
328 PF07539 DRIM: Down-regulated 79.6 17 0.00036 27.6 7.7 30 104-133 16-45 (141)
329 smart00802 UME Domain in UVSB 77.9 23 0.00049 25.4 9.0 59 314-374 29-89 (107)
330 PF07539 DRIM: Down-regulated 77.5 29 0.00062 26.3 10.3 100 260-367 16-126 (141)
331 KOG3961 Uncharacterized conser 77.5 10 0.00022 30.7 6.1 87 260-346 113-206 (262)
332 smart00802 UME Domain in UVSB 76.7 25 0.00054 25.2 9.7 71 185-257 13-89 (107)
333 KOG2153 Protein involved in th 76.4 76 0.0016 30.6 23.5 108 106-213 211-354 (704)
334 KOG1837 Uncharacterized conser 76.0 1.2E+02 0.0026 32.8 32.1 92 318-411 1522-1615(1621)
335 KOG2199 Signal transducing ada 75.5 48 0.001 29.7 10.1 73 28-100 46-123 (462)
336 PF14868 DUF4487: Domain of un 75.4 80 0.0017 30.4 24.5 86 322-408 463-553 (559)
337 KOG1988 Uncharacterized conser 75.1 96 0.0021 31.2 19.5 137 26-164 23-159 (970)
338 PF14668 RICTOR_V: Rapamycin-i 75.1 18 0.0004 23.7 5.9 54 317-370 4-60 (73)
339 KOG3687 Tuberin - Rap/ran-GTPa 74.5 1.1E+02 0.0023 31.5 19.1 89 4-92 43-135 (1697)
340 PF14631 FancD2: Fanconi anaem 74.3 92 0.002 34.0 13.9 140 23-165 431-575 (1426)
341 PF14668 RICTOR_V: Rapamycin-i 74.0 16 0.00035 24.0 5.5 53 356-408 4-59 (73)
342 KOG1087 Cytosolic sorting prot 73.7 38 0.00082 31.6 9.7 97 308-410 13-115 (470)
343 KOG1222 Kinesin associated pro 72.6 83 0.0018 29.3 25.5 93 104-196 303-399 (791)
344 COG2733 Predicted membrane pro 71.9 76 0.0016 28.6 20.6 23 192-214 310-332 (415)
345 PF11935 DUF3453: Domain of un 71.4 61 0.0013 27.3 19.0 112 225-350 46-164 (239)
346 cd06561 AlkD_like A new struct 67.4 64 0.0014 25.9 14.5 65 69-136 108-172 (197)
347 PF11841 DUF3361: Domain of un 67.2 57 0.0012 25.3 9.6 114 260-373 10-136 (160)
348 PF11707 Npa1: Ribosome 60S bi 66.8 95 0.0021 27.7 15.0 147 263-409 58-239 (330)
349 cd07064 AlkD_like_1 A new stru 65.9 74 0.0016 26.1 16.0 134 104-252 45-180 (208)
350 PF12612 TFCD_C: Tubulin foldi 64.4 75 0.0016 25.6 8.9 104 183-290 7-116 (193)
351 KOG2122 Beta-catenin-binding p 64.0 2.3E+02 0.0049 31.0 22.4 69 339-407 530-601 (2195)
352 PF06371 Drf_GBD: Diaphanous G 63.4 63 0.0014 25.7 8.3 56 78-133 128-186 (187)
353 PF11935 DUF3453: Domain of un 63.3 91 0.002 26.2 18.8 20 113-132 1-20 (239)
354 COG4912 Predicted DNA alkylati 62.6 46 0.00099 27.3 7.0 68 103-173 116-183 (222)
355 KOG1789 Endocytosis protein RM 62.6 2.1E+02 0.0045 30.1 24.1 151 43-194 1741-1909(2235)
356 KOG0929 Guanine nucleotide exc 62.4 2.4E+02 0.0052 30.8 15.7 62 67-133 1038-1099(1514)
357 KOG3036 Protein involved in ce 61.2 99 0.0022 26.0 12.5 71 63-133 121-196 (293)
358 KOG3036 Protein involved in ce 61.2 99 0.0022 26.0 10.0 67 262-328 125-196 (293)
359 PF04869 Uso1_p115_head: Uso1 60.6 1.2E+02 0.0026 26.8 10.7 17 118-134 51-67 (312)
360 PF14631 FancD2: Fanconi anaem 60.3 2.7E+02 0.0059 30.7 26.4 149 259-409 433-585 (1426)
361 PF06371 Drf_GBD: Diaphanous G 60.1 61 0.0013 25.8 7.7 55 313-367 129-186 (187)
362 cd07920 Pumilio Pumilio-family 60.0 1.2E+02 0.0027 26.7 24.5 7 339-345 281-287 (322)
363 KOG2038 CAATT-binding transcri 58.8 2E+02 0.0043 28.7 23.0 66 67-134 305-370 (988)
364 COG5330 Uncharacterized protei 58.4 52 0.0011 29.3 7.2 64 303-366 10-74 (364)
365 KOG2229 Protein required for a 58.4 1.7E+02 0.0036 27.6 28.7 70 64-135 18-87 (616)
366 PF04388 Hamartin: Hamartin pr 57.9 2.1E+02 0.0045 28.6 12.3 87 104-192 69-161 (668)
367 KOG2153 Protein involved in th 56.7 2E+02 0.0043 28.0 31.0 52 123-174 303-354 (704)
368 COG4912 Predicted DNA alkylati 55.1 95 0.0021 25.5 7.6 74 63-139 115-188 (222)
369 KOG3961 Uncharacterized conser 54.8 94 0.002 25.4 7.4 88 299-386 113-207 (262)
370 PF11841 DUF3361: Domain of un 53.7 1E+02 0.0023 23.9 10.3 109 185-293 13-134 (160)
371 COG5330 Uncharacterized protei 53.5 84 0.0018 28.1 7.6 63 30-92 10-73 (364)
372 PF14663 RasGEF_N_2: Rapamycin 52.5 44 0.00094 24.3 5.0 31 299-329 7-37 (115)
373 PF14228 MOR2-PAG1_mid: Cell m 52.3 3.2E+02 0.007 29.2 14.6 167 41-214 484-651 (1120)
374 KOG1222 Kinesin associated pro 52.0 2.1E+02 0.0045 26.9 26.3 105 24-130 301-409 (791)
375 PF12783 Sec7_N: Guanine nucle 51.2 1.2E+02 0.0025 23.8 10.1 71 259-329 71-146 (168)
376 KOG2050 Puf family RNA-binding 51.1 2.3E+02 0.0051 27.2 21.9 114 196-312 294-409 (652)
377 KOG2038 CAATT-binding transcri 50.9 2.7E+02 0.0059 27.9 24.6 124 143-270 303-428 (988)
378 KOG1932 TATA binding protein a 50.7 3.2E+02 0.007 28.7 15.8 84 314-400 882-973 (1180)
379 PF11919 DUF3437: Domain of un 49.6 84 0.0018 21.7 6.3 57 315-372 4-62 (90)
380 KOG2229 Protein required for a 49.5 2.3E+02 0.0051 26.7 27.1 107 23-131 16-126 (616)
381 KOG1877 Putative transmembrane 47.2 3.2E+02 0.007 27.7 15.1 92 122-213 73-175 (819)
382 PF13764 E3_UbLigase_R4: E3 ub 47.0 1.9E+02 0.0042 29.4 9.9 180 48-229 123-317 (802)
383 PF10304 DUF2411: Domain of un 46.9 43 0.00094 18.4 3.2 28 379-406 6-34 (36)
384 PF14222 MOR2-PAG1_N: Cell mor 46.1 2.9E+02 0.0063 26.8 29.8 63 323-385 455-518 (552)
385 PF14663 RasGEF_N_2: Rapamycin 46.0 38 0.00082 24.6 3.9 34 335-368 4-37 (115)
386 COG5231 VMA13 Vacuolar H+-ATPa 43.5 2.3E+02 0.005 25.0 17.9 25 70-94 153-177 (432)
387 PF12333 Ipi1_N: Rix1 complex 43.2 1.2E+02 0.0025 21.5 6.3 51 260-310 10-63 (102)
388 PF01465 GRIP: GRIP domain; I 43.1 64 0.0014 18.9 3.8 32 338-369 6-37 (46)
389 KOG2374 Uncharacterized conser 42.5 1.6E+02 0.0034 27.5 7.7 107 106-216 8-129 (661)
390 PF08324 PUL: PUL domain; Int 42.2 2.2E+02 0.0047 24.3 8.9 97 37-133 120-230 (268)
391 KOG0905 Phosphoinositide 3-kin 42.0 3.8E+02 0.0083 28.6 10.8 87 155-255 901-991 (1639)
392 COG5110 RPN1 26S proteasome re 41.9 3.2E+02 0.007 26.2 24.2 84 282-369 623-706 (881)
393 KOG1789 Endocytosis protein RM 41.0 3E+02 0.0066 29.0 9.9 117 250-367 1760-1882(2235)
394 KOG2256 Predicted protein invo 40.9 3.6E+02 0.0078 26.4 19.6 20 314-333 442-461 (661)
395 KOG1932 TATA binding protein a 40.8 2.2E+02 0.0048 29.8 9.1 53 270-330 652-706 (1180)
396 KOG1988 Uncharacterized conser 40.8 4.1E+02 0.0089 27.1 17.6 63 192-254 72-134 (970)
397 KOG1086 Cytosolic sorting prot 40.5 3E+02 0.0065 25.4 9.2 25 382-406 177-201 (594)
398 KOG3687 Tuberin - Rap/ran-GTPa 40.2 1.3E+02 0.0029 30.8 7.4 80 267-347 435-522 (1697)
399 PF12333 Ipi1_N: Rix1 complex 39.9 1E+02 0.0022 21.8 5.2 54 298-351 9-65 (102)
400 PF04078 Rcd1: Cell differenti 38.0 2.6E+02 0.0055 23.9 14.8 72 24-95 92-168 (262)
401 PF09759 Atx10homo_assoc: Spin 37.2 1E+02 0.0022 21.9 4.7 56 83-138 3-63 (102)
402 PF08620 RPAP1_C: RPAP1-like, 36.3 58 0.0013 21.4 3.1 32 339-370 39-70 (73)
403 KOG1825 Fry-like conserved pro 36.1 4.7E+02 0.01 29.9 11.0 105 26-133 1167-1272(2206)
404 KOG2374 Uncharacterized conser 33.8 4.1E+02 0.0089 25.0 10.9 21 314-334 110-130 (661)
405 PF05997 Nop52: Nucleolar prot 33.0 2.8E+02 0.0061 22.9 18.7 31 372-402 183-213 (217)
406 KOG1566 Conserved protein Mo25 32.9 3.5E+02 0.0075 23.9 18.6 217 181-401 77-327 (342)
407 PF01417 ENTH: ENTH domain; I 32.8 2E+02 0.0043 21.1 8.2 61 306-369 9-72 (125)
408 PF08324 PUL: PUL domain; Int 32.2 3.2E+02 0.007 23.3 11.4 95 312-406 122-230 (268)
409 PF09268 Clathrin-link: Clathr 31.1 59 0.0013 16.0 1.9 17 106-122 4-20 (24)
410 PF12783 Sec7_N: Guanine nucle 30.7 2.6E+02 0.0056 21.8 9.5 71 337-407 71-146 (168)
411 cd07920 Pumilio Pumilio-family 29.9 3.8E+02 0.0083 23.5 23.7 8 305-312 270-277 (322)
412 KOG0267 Microtubule severing p 29.1 1.4E+02 0.003 29.4 5.5 75 64-139 674-748 (825)
413 KOG0267 Microtubule severing p 28.9 2.6E+02 0.0056 27.7 7.2 60 234-294 688-747 (825)
414 KOG1566 Conserved protein Mo25 27.5 4.3E+02 0.0094 23.3 18.3 185 221-409 78-288 (342)
415 COG5231 VMA13 Vacuolar H+-ATPa 26.6 4.6E+02 0.0099 23.3 19.0 69 339-407 356-428 (432)
416 KOG0929 Guanine nucleotide exc 26.2 9.4E+02 0.02 26.8 18.8 209 2-215 1051-1301(1514)
417 PF14961 BROMI: Broad-minded p 25.0 3.9E+02 0.0084 28.6 8.0 54 314-368 176-231 (1296)
418 PF08158 NUC130_3NT: NUC130/3N 24.7 1.4E+02 0.003 18.1 3.2 30 64-93 17-46 (52)
419 PF14726 RTTN_N: Rotatin, an a 24.7 2.6E+02 0.0055 19.7 6.6 27 340-366 31-57 (98)
420 PHA02855 anti-apoptotic membra 24.3 2.5E+02 0.0054 21.8 5.1 23 349-371 87-109 (180)
421 KOG3534 p53 inducible protein 24.1 3.4E+02 0.0073 26.8 7.0 76 137-212 920-997 (1253)
422 cd03562 CID CID (CTD-Interacti 23.6 2.8E+02 0.0061 19.8 9.1 70 337-406 35-107 (114)
423 PF04510 DUF577: Family of unk 23.6 3.7E+02 0.0081 21.3 11.8 54 99-156 40-96 (174)
424 KOG1823 DRIM (Down-regulated i 23.5 1E+03 0.022 26.2 28.8 344 28-387 808-1178(1364)
425 smart00582 RPR domain present 23.1 3E+02 0.0064 19.9 7.5 68 301-368 33-107 (121)
426 PF13925 Katanin_con80: con80 22.5 3.8E+02 0.0083 20.9 7.7 36 337-372 67-102 (164)
427 PF12243 CTK3: CTD kinase subu 22.3 3.5E+02 0.0077 20.5 8.5 70 299-368 39-119 (139)
428 PF11707 Npa1: Ribosome 60S bi 22.1 5.7E+02 0.012 22.8 18.3 145 224-368 58-237 (330)
429 KOG2122 Beta-catenin-binding p 21.3 1.2E+03 0.026 26.2 21.4 69 261-329 530-601 (2195)
430 COG1698 Uncharacterized protei 21.0 2.9E+02 0.0062 19.0 7.7 65 261-325 17-86 (93)
431 PF12726 SEN1_N: SEN1 N termin 21.0 8.8E+02 0.019 24.6 29.2 115 26-140 119-249 (727)
432 KOG3534 p53 inducible protein 20.8 8.5E+02 0.018 24.3 10.7 38 176-213 920-957 (1253)
433 cd00872 PI3Ka_I Phosphoinositi 20.7 4.3E+02 0.0094 20.9 10.0 33 157-194 84-116 (171)
No 1
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-37 Score=283.84 Aligned_cols=409 Identities=51% Similarity=0.754 Sum_probs=384.8
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch-hhhhhhHHHHHhhccCCC
Q 015150 1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-DCVAHILPVIVNFSQDKS 79 (412)
Q Consensus 1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~-~~~~~l~~~l~~l~~d~~ 79 (412)
+|+||.++++.++.+++.++.+.....++|.+..+..|+.+.||..|...+..+...+... +..+.+.+.+.+..+|++
T Consensus 250 ~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~ 329 (759)
T KOG0211|consen 250 TPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGS 329 (759)
T ss_pred chhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChh
Confidence 5899999999999999999988889999999999999999999999999999999998877 788889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC----HHHHHHhhhhhHHHhccC
Q 015150 80 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----PELAIQHILPCVKELSSD 155 (412)
Q Consensus 80 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~~~~d 155 (412)
|++|....+....+...++.+..+.+..+.+...++|+.+++|.++..-...++.+.. .+...+.++|.+..+..|
T Consensus 330 ~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d 409 (759)
T KOG0211|consen 330 WRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLD 409 (759)
T ss_pred HHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhc
Confidence 9999999999999999999988888999999999999999999999999999999887 556677789999999999
Q ss_pred CcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHH---HHHHHHHHhhchhhHHhhHHHHHHHHhc
Q 015150 156 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNII---SKLDQVNQVIGIDLLSQSLLPAIVELAE 232 (412)
Q Consensus 156 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~---~~l~~i~~~~~~~~~~~~~~~~l~~~~~ 232 (412)
.+..||.+.+..+..+...+|++...+.+.|.+...++|+.+.||.+.. ..+.......|.+...+..+|.+..+..
T Consensus 410 ~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~ 489 (759)
T KOG0211|consen 410 NALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAE 489 (759)
T ss_pred ccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhcc
Confidence 9999999999999999999998888889999999999999999999998 4555556666778888999999999999
Q ss_pred CCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCC
Q 015150 233 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 312 (412)
Q Consensus 233 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~ 312 (412)
|..|++|.++.+.++.++...|..++.+.+.+.+...+.|....+|.+|+.++..++..+|.+|....++|.++....++
T Consensus 490 d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~ 569 (759)
T KOG0211|consen 490 DLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQD 569 (759)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCc
Q 015150 313 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDV 392 (412)
Q Consensus 313 ~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~ 392 (412)
+|.+|.+.+.++..+++.+|.+.+.+.++|.+..+..|++++||..+++.+..+.+.+......+.+.|.+..+.+|++.
T Consensus 570 ~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~ 649 (759)
T KOG0211|consen 570 NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQEL 649 (759)
T ss_pred ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhHHhh
Q 015150 393 DVRFFATQALQSKDQVM 409 (412)
Q Consensus 393 ~vr~~a~~al~~~~~~~ 409 (412)
+||..|..|++.+....
T Consensus 650 dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 650 DVRYRAILAFGSIELSR 666 (759)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 99999999999987643
No 2
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.98 E-value=2e-30 Score=240.36 Aligned_cols=408 Identities=22% Similarity=0.296 Sum_probs=326.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHH
Q 015150 3 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRV 82 (412)
Q Consensus 3 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~v 82 (412)
.||+++++.+..++...+++...+.+.|++..+..+++-..|..++..++..+..++++..+..+.+...++++|.++.|
T Consensus 174 ~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~V 253 (759)
T KOG0211|consen 174 GVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMV 253 (759)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhh
Confidence 58999999999999988887778899999999999988778999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH-HHHHhhhhhHHHhccCCcHHHH
Q 015150 83 RYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSDSSQHVR 161 (412)
Q Consensus 83 R~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr 161 (412)
|..+++.++.++.....+.....++|.+.++..|....||.+|...+..+...+..+ ...+.+.+.+.+..+|.+|.+|
T Consensus 254 r~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~ 333 (759)
T KOG0211|consen 254 RRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVS 333 (759)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHH
Confidence 999999999999999988888899999999999999999999999999999998877 7888899999999999999999
Q ss_pred HHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc----hhhHHhhHHHHHHHHhcCCCch
Q 015150 162 SALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVELAEDRHWR 237 (412)
Q Consensus 162 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~----~~~~~~~~~~~l~~~~~d~~~~ 237 (412)
..+...+..+...+|.+.....+.+.+..+++|+..++|.+.+.....+...+. ++...+.++|.+..+..|.+..
T Consensus 334 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~ 413 (759)
T KOG0211|consen 334 YMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALH 413 (759)
T ss_pred HHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccch
Confidence 999999999998888866666788888899999989999888888888877766 3334455667777777776666
Q ss_pred HHHHHHHHhhHHHhhhChhhHH------------------------------------------HHHHHHHHHHhcCchh
Q 015150 238 VRLAIIEYIPLLASQLGVGFFD------------------------------------------DKLGALCMQWLKDKVY 275 (412)
Q Consensus 238 vr~~~~~~l~~l~~~~~~~~~~------------------------------------------~~l~~~l~~~l~d~~~ 275 (412)
+|.+.+..+..+...+|.+... +..+|.+..+-.|..|
T Consensus 414 vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~w 493 (759)
T KOG0211|consen 414 VRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLW 493 (759)
T ss_pred HHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhH
Confidence 6666655555554444443333 4444444444445555
Q ss_pred HHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchH
Q 015150 276 SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNI 355 (412)
Q Consensus 276 ~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~v 355 (412)
.+|.+....+..++...|..++.+.+-+.+...+.|.-+.+|.++...+..++..+|.+....++.|.++....++++.+
T Consensus 494 Rvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~ 573 (759)
T KOG0211|consen 494 RVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLV 573 (759)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccch
Confidence 55555555555555555555555555555555555555566666666666666666655666677777777777778888
Q ss_pred HHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150 356 KFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 356 R~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 410 (412)
|.+++.++..++..+|.+.+.++++|.+..+..|++++||.++++.+..+...+.
T Consensus 574 R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~ 628 (759)
T KOG0211|consen 574 RMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD 628 (759)
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc
Confidence 8888888888888889999999999999999999999999999999999987654
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.1e-25 Score=207.92 Aligned_cols=410 Identities=13% Similarity=0.173 Sum_probs=321.3
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch--hhhhhhHHHHHhhccCC
Q 015150 1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDK 78 (412)
Q Consensus 1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~d~ 78 (412)
.|.||++.+..+..+++...++ -|+++++.+....+++++..|.+|..++.++...++.. .....+.+++.+.+.|+
T Consensus 93 ~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~ 171 (1075)
T KOG2171|consen 93 EPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDP 171 (1075)
T ss_pred chHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCC
Confidence 3789999999999999987666 79999999999999999999999999999999988764 34567999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHH----HhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhh
Q 015150 79 SWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYV----RLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPC 148 (412)
Q Consensus 79 ~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~----~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~ 148 (412)
+..||..++++++.++.....+. ....++|.+. +.+.+.+...-..++++|..+++..++- .....++.+
T Consensus 172 s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~ 251 (1075)
T KOG2171|consen 172 SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQF 251 (1075)
T ss_pred cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 88899999999999999886322 1134555444 4556667777788888888887765542 344456666
Q ss_pred HHHhcc--CCcHHHHHHHHHHHHhcCcccChh-----HHHHhhHHHHHHhhccc---------------C-hHHHHHHHH
Q 015150 149 VKELSS--DSSQHVRSALATVIMGMAPILGKD-----ATIEQLLPIFLSLLKDE---------------F-PDVRLNIIS 205 (412)
Q Consensus 149 l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~---------------~-~~vr~~~~~ 205 (412)
...... +-+..+|..+.+.+..+++.-... .....++|.+..++.|. + ..--..+.+
T Consensus 252 ~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~ 331 (1075)
T KOG2171|consen 252 SLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQ 331 (1075)
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHH
Confidence 666654 457899999999888877652111 12345667666665321 1 224456788
Q ss_pred HHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchhHHHHHHHH
Q 015150 206 KLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAAN 283 (412)
Q Consensus 206 ~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~ 283 (412)
++..++..+|.+.+.+.+++.+..++.+++|+-|.+++.+++.+++..+... ..+.++|++++.++|+++.||.+|+.
T Consensus 332 ~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~n 411 (1075)
T KOG2171|consen 332 ALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALN 411 (1075)
T ss_pred HHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 9999999999888889999999999999999999999999999998876532 35779999999999999999999999
Q ss_pred HHHHHHHHhChhh---hhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchh---HHHHhhHH-HHHhhcCCCCchH
Q 015150 284 NVKRLAEEFGPDW---AMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE---ITCSQLLP-VVINASKDRVPNI 355 (412)
Q Consensus 284 ~l~~l~~~~~~~~---~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~---~~~~~il~-~l~~~l~d~~~~v 355 (412)
++|.+...+.++. ..+.+.|.+...+.++. .++...++.++-.+.+.+.++ +|.+.++. .+..+++.+.+.|
T Consensus 412 aigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v 491 (1075)
T KOG2171|consen 412 AIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYV 491 (1075)
T ss_pred HHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 9999999988753 34567778888777754 688888888888888877765 56777777 5555667778999
Q ss_pred HHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcCC----CCccHHHHHHHHHHHhHHhhhC
Q 015150 356 KFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED----PDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 356 R~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d----~~~~vr~~a~~al~~~~~~~~~ 411 (412)
|..+..+|+..+...+.. .|.+.++|.|++.+.. ....+|..+.+.++.++.++|.
T Consensus 492 ~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGk 553 (1075)
T KOG2171|consen 492 QEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGK 553 (1075)
T ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhh
Confidence 999999999999888775 4668899999885432 2345778888888888888874
No 4
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3e-26 Score=201.83 Aligned_cols=405 Identities=17% Similarity=0.173 Sum_probs=307.2
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch-------hhhhhhHHHHHhh
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-------DCVAHILPVIVNF 74 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~-------~~~~~l~~~l~~l 74 (412)
|.+|..+...+.++++..+... |++++|.+.+++.+++......|..+|..+++..... .-...++|.++++
T Consensus 104 ~lIr~tvGivITTI~s~~~~~~-wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f 182 (885)
T KOG2023|consen 104 PLIRATVGIVITTIASTGGLQH-WPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQF 182 (885)
T ss_pred HHHHhhhhheeeeeeccccccc-chhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHH
Confidence 5667777777777776665544 7999999999999999888999999999998864431 1234589999999
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHH
Q 015150 75 SQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVK 150 (412)
Q Consensus 75 ~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~ 150 (412)
.+++++.+|..++.++..+.-.-.... ..+..+..+..+.+|++++||+..+.++.-+.+..++. +....++.++.
T Consensus 183 ~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML 262 (885)
T KOG2023|consen 183 FKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYML 262 (885)
T ss_pred HhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHH
Confidence 999999999999999887654322221 23567888888899999999999999999998876554 44566888889
Q ss_pred HhccCCcHHHHHHHHHHHHhcCcccChh----HHHHhhHHHHHHhh----------c-----------------------
Q 015150 151 ELSSDSSQHVRSALATVIMGMAPILGKD----ATIEQLLPIFLSLL----------K----------------------- 193 (412)
Q Consensus 151 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l----------~----------------------- 193 (412)
+..+|.++.|.-.||+.+..+++.--.. .+...++|.+.+-+ +
T Consensus 263 ~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk 342 (885)
T KOG2023|consen 263 QRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSK 342 (885)
T ss_pred HHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhch
Confidence 9999999999999999998888654222 12356667665422 2
Q ss_pred -------------c----------cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHH
Q 015150 194 -------------D----------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 250 (412)
Q Consensus 194 -------------d----------~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~ 250 (412)
| .++..|+-.+.+|..++..++.+.+ +.++|.+.+.+.++.|.+|.+.+-+++.++
T Consensus 343 ~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIA 421 (885)
T KOG2023|consen 343 EHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELL-PILLPLLKEHLSSEEWKVREAGVLALGAIA 421 (885)
T ss_pred hccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHH
Confidence 0 1267899889999999988886655 889999999999999999999999999999
Q ss_pred hhhCh--hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh---hhhhhHHHHHhhhcCCchHHHHHHHHHHH
Q 015150 251 SQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAIS 325 (412)
Q Consensus 251 ~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~l~~l~~~~~~~~~~~r~~~~~~l~ 325 (412)
+..-. -...+.++|.++.+|.|..+-||.-++.+|+++....-.+. +...++..+++.+-|.+-+|.++++.++.
T Consensus 422 EGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfA 501 (885)
T KOG2023|consen 422 EGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFA 501 (885)
T ss_pred HHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 98733 23456799999999999999999999999999988764332 23345555566667889999999999999
Q ss_pred Hhccccchh--HHHHhhHHHHHhhcC---CCCchHHHHHHHHHHHHhhhhch----HHHHhhHHHHH-Hh--hcCCCCcc
Q 015150 326 LLAPVMGSE--ITCSQLLPVVINASK---DRVPNIKFNVAKVLQSLIPIVDQ----SVVEKSIRPCL-VE--LSEDPDVD 393 (412)
Q Consensus 326 ~l~~~~~~~--~~~~~il~~l~~~l~---d~~~~vR~~~~~~l~~l~~~~~~----~~~~~~i~~~l-~~--l~~d~~~~ 393 (412)
.+-+.-|.+ +|...++..+...++ .++-. ....+++.++..+|. ..+.+.++|.| .+ +++|.|++
T Consensus 502 tleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLl---ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKd 578 (885)
T KOG2023|consen 502 TLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLL---ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKD 578 (885)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHhhccee---hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccch
Confidence 998777766 577777777766654 23322 345666666666654 33444455544 44 68999999
Q ss_pred HHHHHHHHHHHhHHhhhCC
Q 015150 394 VRFFATQALQSKDQVMMSG 412 (412)
Q Consensus 394 vr~~a~~al~~~~~~~~~~ 412 (412)
+ .-..+.+.+++.++|+|
T Consensus 579 L-fPLLEClSsia~AL~~g 596 (885)
T KOG2023|consen 579 L-FPLLECLSSIASALGVG 596 (885)
T ss_pred H-HHHHHHHHHHHHHHhcc
Confidence 7 56778888888888875
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-23 Score=197.68 Aligned_cols=410 Identities=19% Similarity=0.193 Sum_probs=316.0
Q ss_pred CchhHHHHHHHHHHHHHHhhh---hhhHHHHHHHHH-HhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhcc
Q 015150 1 MPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFE-ELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ 76 (412)
Q Consensus 1 ~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~-~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~ 76 (412)
+|.+|+-++-.+.+++...-. ....+.+...+. ...+...+.+|..-++.+..+++...++ .|+.+++++.+..+
T Consensus 50 ~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~ 128 (1075)
T KOG2171|consen 50 DPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTK 128 (1075)
T ss_pred ChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhc
Confidence 478888888888887765321 233444554443 3456667889999999999999998888 89999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC--HH--HHHHhhhhhHH
Q 015150 77 DKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--PE--LAIQHILPCVK 150 (412)
Q Consensus 77 d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~--~~~~~~~~~l~ 150 (412)
++++..|..+...|..+...++... +..++.+.+.+.+.|++..||..++++++.++...+ .. .....++|.+.
T Consensus 129 S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l 208 (1075)
T KOG2171|consen 129 SPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLL 208 (1075)
T ss_pred CCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHH
Confidence 9999999999999999999998765 446899999999999998899999999999999885 22 22233556444
Q ss_pred H----hccCCcHHHHHHHHHHHHhcCcccChh--HHHHhhHHHHHHhhccc--ChHHHHHHHHHHHHHHHhhch-----h
Q 015150 151 E----LSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGI-----D 217 (412)
Q Consensus 151 ~----~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~--~~~vr~~~~~~l~~i~~~~~~-----~ 217 (412)
. .+.+.+...-..+.+++.+++...++- .....++.......++. ++.+|..|+..+..+.+.-.. .
T Consensus 209 ~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~ 288 (1075)
T KOG2171|consen 209 NVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLA 288 (1075)
T ss_pred HHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhch
Confidence 3 456677777778888888887665542 12244555555555544 689999999999888776221 1
Q ss_pred hHHhhHHHHHHHHhcC----CC------------chHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHH
Q 015150 218 LLSQSLLPAIVELAED----RH------------WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAA 281 (412)
Q Consensus 218 ~~~~~~~~~l~~~~~d----~~------------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a 281 (412)
.+.+.+++.+..++.+ +. ......+..++..++..+|++...+.+++.+..++.+++|.-|.++
T Consensus 289 ~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~Aa 368 (1075)
T KOG2171|consen 289 LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAA 368 (1075)
T ss_pred hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHH
Confidence 1345667777665432 11 2246678889999999999988888899999999999999999999
Q ss_pred HHHHHHHHHHhChh--hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCC-CchH
Q 015150 282 ANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDR-VPNI 355 (412)
Q Consensus 282 ~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~-~~~v 355 (412)
+.+++.+.+..+.. ...+.++|.+.+.++|++++||.+++.++|+++.-++++ .+.+.+.|.+...+.|+ ++.|
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV 448 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRV 448 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHH
Confidence 99999999866532 124678889999999999999999999999999988875 46777888888888775 5688
Q ss_pred HHHHHHHHHHHhhhhchHH---HHhhHHH-HHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150 356 KFNVAKVLQSLIPIVDQSV---VEKSIRP-CLVELSEDPDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 356 R~~~~~~l~~l~~~~~~~~---~~~~i~~-~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 411 (412)
...++.++-.++.....+. |.+.++. .+..+...+.+.||..+..|+++++..+++
T Consensus 449 ~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 449 QAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 8888888888876655543 3334444 455567778889999999999999998875
No 6
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3e-24 Score=189.42 Aligned_cols=372 Identities=20% Similarity=0.197 Sum_probs=282.5
Q ss_pred CCchHHHHHHHHhHHHHhhccC---chhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc
Q 015150 38 DDQDSVRLLAVEGCGALGKLLE---PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL 114 (412)
Q Consensus 38 ~~~~~~r~~a~~~l~~i~~~~~---~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 114 (412)
+++..+|..|--.|.+-.+... +.....++-..+++.+.|+++.+|...-..++.++..-+ -..+++++|.+.+++
T Consensus 59 ~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~L 137 (885)
T KOG2023|consen 59 SEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGG-LQHWPELLPQLCELL 137 (885)
T ss_pred ccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccc-cccchhHHHHHHHHh
Confidence 3344567666555554333211 123445566667777889999888776666665554322 235789999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCHH-------HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHH--HHhhH
Q 015150 115 RDNEAEVRIAAAGKVTKICRILNPE-------LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQLL 185 (412)
Q Consensus 115 ~d~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~ 185 (412)
..++....+.|+.+|.++++-..+. ...+.++|-+....+++++.+|.-++.++..+.-....... .+..+
T Consensus 138 ~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fl 217 (885)
T KOG2023|consen 138 DSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFL 217 (885)
T ss_pred cCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHH
Confidence 9999999999999999998743221 23456899999999999999999999999887754433322 25666
Q ss_pred HHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH---HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC-hhh---H
Q 015150 186 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VGF---F 258 (412)
Q Consensus 186 ~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~---~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~~~---~ 258 (412)
..+..+-.|++++||+....++.-+.+.- ++.+ ...++..+.+...|.+..|-..+++.+..+++.-- ++. +
T Consensus 218 e~lFalanD~~~eVRk~vC~alv~Llevr-~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~ 296 (885)
T KOG2023|consen 218 EILFALANDEDPEVRKNVCRALVFLLEVR-PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPY 296 (885)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhc-HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHH
Confidence 77777789999999999999998887653 3333 34567777888899999999999999988887542 222 3
Q ss_pred HHHHHHHHHHHh----------c------------------------------------C----------chhHHHHHHH
Q 015150 259 DDKLGALCMQWL----------K------------------------------------D----------KVYSIRDAAA 282 (412)
Q Consensus 259 ~~~l~~~l~~~l----------~------------------------------------d----------~~~~vr~~a~ 282 (412)
.+.++|++++.+ + | .+|+.|+..+
T Consensus 297 l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSA 376 (885)
T KOG2023|consen 297 LDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSA 376 (885)
T ss_pred HHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccH
Confidence 466778877543 2 0 1388999999
Q ss_pred HHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHH
Q 015150 283 NNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVA 360 (412)
Q Consensus 283 ~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~ 360 (412)
.++..+...+|.+ +...++|.+.+.+.+..|.+|++++-++|++++.+-.. ++.+.++|.++.++.|+.+-||..++
T Consensus 377 AaLDVLanvf~~e-lL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 377 AALDVLANVFGDE-LLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred HHHHHHHHhhHHH-HHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeee
Confidence 9999999888765 56789999999999999999999999999999877543 56788999999999999999999999
Q ss_pred HHHHHHhhhhchH---HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhCC
Q 015150 361 KVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 412 (412)
Q Consensus 361 ~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~~ 412 (412)
++|+..++.+-.+ .+...++..+...+-|.+++|+.+|+.|+.++-+.+|++
T Consensus 456 WTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e 510 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE 510 (885)
T ss_pred eeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch
Confidence 9999998765433 333445555555568999999999999999999988763
No 7
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.91 E-value=3.1e-22 Score=197.14 Aligned_cols=275 Identities=22% Similarity=0.273 Sum_probs=221.6
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhh
Q 015150 67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL 146 (412)
Q Consensus 67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 146 (412)
-++.+...+.|+++.||..+++.|+.+.. ...++.+...++|+++.||..|+.+|..+.+..+..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~------- 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA------- 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch-------
Confidence 44567788899999999999999998752 557899999999999999999999999886544332
Q ss_pred hhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHH
Q 015150 147 PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 226 (412)
Q Consensus 147 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~ 226 (412)
+.+...+.++++.||.+++..|+.+.. +. .+.+...++|+++.||..++.+|+.+.. .+.
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~ 746 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES 746 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence 455667788999999999999988652 11 2346678999999999999999998632 133
Q ss_pred HHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHH
Q 015150 227 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL 306 (412)
Q Consensus 227 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~ 306 (412)
+..++.|+++.||..++..|+.+...-. ...+.+..+++|+++.||.+|+.+|+.+.. + ..+.+.+.
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~---~~~~~~l~ 813 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGGA------PAGDAVRALTGDPDPLVRAAALAALAELGC----P---PDDVAAAT 813 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhccccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c---chhHHHHH
Confidence 5678899999999999999987754321 135667888999999999999999987642 1 23446678
Q ss_pred hhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhh
Q 015150 307 EMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL 386 (412)
Q Consensus 307 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l 386 (412)
..+.|++|.+|.+++++|+.+.. +...+.+...++|+++.||..++.+|+.+. + .+...+.|...
T Consensus 814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~a 878 (897)
T PRK13800 814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTA 878 (897)
T ss_pred HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHH
Confidence 88999999999999999998652 345688999999999999999999999872 1 24578888899
Q ss_pred cCCCCccHHHHHHHHHHH
Q 015150 387 SEDPDVDVRFFATQALQS 404 (412)
Q Consensus 387 ~~d~~~~vr~~a~~al~~ 404 (412)
++|+|.+||..|..||..
T Consensus 879 l~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 879 LTDSDADVRAYARRALAH 896 (897)
T ss_pred HhCCCHHHHHHHHHHHhh
Confidence 999999999999999874
No 8
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.2e-19 Score=160.90 Aligned_cols=404 Identities=18% Similarity=0.181 Sum_probs=304.9
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhcc-CCchHHHHHHHHhHHHHhhccCchh-hhhhhHHHHHhhccCCC
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEPQD-CVAHILPVIVNFSQDKS 79 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~i~~~~~~~~-~~~~l~~~l~~l~~d~~ 79 (412)
+.||...+++.......-+.+. ...++|...+.++ +.++.+|.......+..+.++...+ ....+...+..-+..|+
T Consensus 31 ~~v~~~ml~a~~~~~~~~~~~~-v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps 109 (569)
T KOG1242|consen 31 IDVRGNMLEAGEAAINQHGDQN-VLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELDTPS 109 (569)
T ss_pred hhhHHhHHHHHHHHHHhhhHHH-HHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcCCCc
Confidence 4567777777766666555433 4557787766665 4467788888888888888865543 33446777777788899
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHH-HHhhhhhHHHhccCCcH
Q 015150 80 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-IQHILPCVKELSSDSSQ 158 (412)
Q Consensus 80 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~~~~d~~~ 158 (412)
..+|.+...++..+........ ..++.+.+.++++.....-|..+...+..+....+.+.+ ...++..+.+...|...
T Consensus 110 ~~~q~~~~~~l~~~~~~~~~~~-~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~ 188 (569)
T KOG1242|consen 110 KSVQRAVSTCLPPLVVLSKGLS-GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKS 188 (569)
T ss_pred HHHHHHHHHHhhhHHHHhhccC-HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccch
Confidence 9999999999998876544333 467888888999888888899999888888776655433 33477777788888665
Q ss_pred HHHH-HHHHHHHhcCcccCh--hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCC
Q 015150 159 HVRS-ALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 235 (412)
Q Consensus 159 ~vr~-~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~ 235 (412)
..+. .+.-++......+|. +.+.-.++|.+.....|..+.||.++..+...+...+..... +.++|.+..-+.+..
T Consensus 189 ~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~llpsll~~l~~~k 267 (569)
T KOG1242|consen 189 ALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLLPSLLGSLLEAK 267 (569)
T ss_pred hhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHhhhhhHHHHHHHh
Confidence 4444 444444444445553 233345667777777889999999999999999888876665 555666555555559
Q ss_pred chHHHHHHHHhhHHHhhhChh--hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCc
Q 015150 236 WRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH 313 (412)
Q Consensus 236 ~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~ 313 (412)
|+.+.++++.++.++...+.+ ...+.++|.+.+.|.|..++||.++..++..+.....+.. ...++|.+.+.+.|++
T Consensus 268 WrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 268 WRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPS 346 (569)
T ss_pred hhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCcc
Confidence 999999999999998887653 3568899999999999999999999999999998887665 4568899999999998
Q ss_pred hHHHHHHHHHHHHh--ccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH----HHHhhHHHHHHhhc
Q 015150 314 YLYRMTILQAISLL--APVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELS 387 (412)
Q Consensus 314 ~~~r~~~~~~l~~l--~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~l~ 387 (412)
..+.. +++.++.- ...... +....+.|.+...+.+.+...++.++..++.++.-..++ .+...++|.++..+
T Consensus 347 ~~~~e-~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~ 424 (569)
T KOG1242|consen 347 CYTPE-CLDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENL 424 (569)
T ss_pred cchHH-HHHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHh
Confidence 54333 33333332 222222 357789999999999999999999999999999888443 56788999999999
Q ss_pred CCCCccHHHHHHHHHHHhHHhhhC
Q 015150 388 EDPDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 388 ~d~~~~vr~~a~~al~~~~~~~~~ 411 (412)
.|++++||..+++|++.+.+-+|.
T Consensus 425 ~d~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 425 DDAVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988874
No 9
>PRK09687 putative lyase; Provisional
Probab=99.90 E-value=2.4e-21 Score=163.87 Aligned_cols=253 Identities=19% Similarity=0.172 Sum_probs=189.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHH
Q 015150 107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP 186 (412)
Q Consensus 107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 186 (412)
.+.+...+.|++..||..++..|..+.. ..+++.+..+++|+++.+|..++..|+.+...-.. ....+|
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~ 93 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFN 93 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHH
Confidence 4566677788888888888888876643 33566677777888888888888888887632110 224556
Q ss_pred HHHHh-hcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHH
Q 015150 187 IFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 265 (412)
Q Consensus 187 ~l~~~-l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 265 (412)
.+..+ ++|+++.||..++.+|+.+...- ......+++.+.....|++|+||..++..++.+. . +..++.
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~--~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----~----~~ai~~ 163 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKN--PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN----D----EAAIPL 163 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccccc--cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC----C----HHHHHH
Confidence 66665 67888888888888888875321 1112345666777788889999999888886442 1 336778
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHH
Q 015150 266 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI 345 (412)
Q Consensus 266 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~ 345 (412)
+..+++|+++.||..|+.+|+.+. .+ .+...+.|...+.|+++.+|..++..|+.+. ....+|.++
T Consensus 164 L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--------~~~av~~Li 229 (280)
T PRK09687 164 LINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK--------DKRVLSVLI 229 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC--------ChhHHHHHH
Confidence 888899999999999999998871 11 2457788888889999999999999998864 246788889
Q ss_pred hhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcC-CCCccHHHHHHHHHHH
Q 015150 346 NASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE-DPDVDVRFFATQALQS 404 (412)
Q Consensus 346 ~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~ 404 (412)
+.++++. +|..++.+++.+.. +..+|.|..+++ ++|..|+..+.+++..
T Consensus 230 ~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 230 KELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 9888865 78889999998875 478899988775 8899999999888864
No 10
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2e-19 Score=161.61 Aligned_cols=409 Identities=18% Similarity=0.182 Sum_probs=290.2
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchH-HHHHHHHhHHHHhhccCchhh---hhhhHHHHHhhc--
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDS-VRLLAVEGCGALGKLLEPQDC---VAHILPVIVNFS-- 75 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~-~r~~a~~~l~~i~~~~~~~~~---~~~l~~~l~~l~-- 75 (412)
|..+..|+++++.++..--+...|+.+++.+.....++.+. +|.++++++|.+++.+.++.. .+.++..+.+..
T Consensus 104 p~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk 183 (859)
T KOG1241|consen 104 PRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRK 183 (859)
T ss_pred CCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccc
Confidence 56677889999999986556677999999988888777766 899999999999999988633 344666666654
Q ss_pred cCCChHHHHHHHHHHHHHHHH----hCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH-------------
Q 015150 76 QDKSWRVRYMVANQLYELCEA----VGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP------------- 138 (412)
Q Consensus 76 ~d~~~~vR~~~~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------------- 138 (412)
..++..||.++.++|-.-.+. +..+...+.++....+..+.++.+||.+|+.||.++....-+
T Consensus 184 ~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfai 263 (859)
T KOG1241|consen 184 EETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAI 263 (859)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999998765543 334555567777777778888888888888888776532100
Q ss_pred --------------------------H------------------------HHHHhhhhhHHHhcc-------CCcHHHH
Q 015150 139 --------------------------E------------------------LAIQHILPCVKELSS-------DSSQHVR 161 (412)
Q Consensus 139 --------------------------~------------------------~~~~~~~~~l~~~~~-------d~~~~vr 161 (412)
+ ...+.++|.+.+++. |.+|..-
T Consensus 264 tl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~ 343 (859)
T KOG1241|consen 264 TLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPA 343 (859)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHH
Confidence 0 001246777777652 3578888
Q ss_pred HHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhh---HHhhHHHHHHHHhcCCCchH
Q 015150 162 SALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELAEDRHWRV 238 (412)
Q Consensus 162 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~---~~~~~~~~l~~~~~d~~~~v 238 (412)
.++..|+.-+++..|++.. +..+|++..-++.+++.-|.+++-+++++...-.++. +.+..+|.+..++.|++--+
T Consensus 344 kAAg~CL~l~A~~~~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~V 422 (859)
T KOG1241|consen 344 KAAGVCLMLFAQCVGDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWV 422 (859)
T ss_pred HHHHHHHHHHHHHhcccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhh
Confidence 8888888888877776643 3777888888888888899999989988877654443 24556778888888887777
Q ss_pred HHHHHHHhhHHHhhhC----hhhHHHHHHHHHHHHhcC------------------------------------------
Q 015150 239 RLAIIEYIPLLASQLG----VGFFDDKLGALCMQWLKD------------------------------------------ 272 (412)
Q Consensus 239 r~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d------------------------------------------ 272 (412)
|.++.++++.++..+. .+...+.+++.++..|+|
T Consensus 423 kdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~ 502 (859)
T KOG1241|consen 423 KDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGS 502 (859)
T ss_pred cchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHH
Confidence 7777777777766542 222222233333333322
Q ss_pred ----------chhHHHHHHHHHHHHHHHHhChhh----------------------------------------------
Q 015150 273 ----------KVYSIRDAAANNVKRLAEEFGPDW---------------------------------------------- 296 (412)
Q Consensus 273 ----------~~~~vr~~a~~~l~~l~~~~~~~~---------------------------------------------- 296 (412)
.....|.+|.++|+++++....+.
T Consensus 503 Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i 582 (859)
T KOG1241|consen 503 LLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSI 582 (859)
T ss_pred HHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHH
Confidence 234588888888888877543210
Q ss_pred ----------hhhhhHHHHHhhhcC-CchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhc-CCCCchHHHHHHHH
Q 015150 297 ----------AMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINAS-KDRVPNIKFNVAKV 362 (412)
Q Consensus 297 ----------~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l-~d~~~~vR~~~~~~ 362 (412)
..+.++..+++.++. ++..+.+.+..+++.++..+|+. .|.+.+.|++...+ +-.+..|=.++...
T Consensus 583 ~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVgl 662 (859)
T KOG1241|consen 583 IRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGL 662 (859)
T ss_pred HHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 123355555555555 34557777888888888888876 47888999999888 55677788888888
Q ss_pred HHHHhhhhchH--HHHhhHHHHHHhhcCCC--CccHHHHHHHHHHHhHHhhhC
Q 015150 363 LQSLIPIVDQS--VVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 363 l~~l~~~~~~~--~~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~~~~~~~~ 411 (412)
.|.++..++.+ .+.+.+...|.+.++.| +.+|+-...+++|.|+-+.|.
T Consensus 663 Vgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~ 715 (859)
T KOG1241|consen 663 VGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGA 715 (859)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHH
Confidence 88888888876 46677777777765554 446888888999998888774
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=7.5e-19 Score=158.04 Aligned_cols=402 Identities=16% Similarity=0.167 Sum_probs=301.4
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCc-hHHHHHHHHhHHHHhhccCc--------------hhhhhh
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEP--------------QDCVAH 66 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~r~~a~~~l~~i~~~~~~--------------~~~~~~ 66 (412)
+.+|++|-..|..++. +.+...+.-+-..+.++++ +..|..|.-.|.+-...-.+ .+.+..
T Consensus 15 ~n~~~~Ae~~l~~~~~----~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~req 90 (859)
T KOG1241|consen 15 QNVRKRAEKQLEQAQS----QNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQ 90 (859)
T ss_pred cchHHHHHHHHHHHHh----ccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHH
Confidence 5778888888877765 2333333334444555554 44687776666654432221 224566
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHH-HHHHHHHHHHHHHHhhCHHHHH---
Q 015150 67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE-VRIAAAGKVTKICRILNPELAI--- 142 (412)
Q Consensus 67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~--- 142 (412)
+-..+++.+..+.++.+..+.++++.++..--+...|+++++.+.....++.+. +|+.+++++|.+++.+.++...
T Consensus 91 VK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~s 170 (859)
T KOG1241|consen 91 VKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQS 170 (859)
T ss_pred HHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 777888888999999999999999999987666677889999999888887766 9999999999999999988443
Q ss_pred HhhhhhHHHhc--cCCcHHHHHHHHHHHHhcCc----ccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch
Q 015150 143 QHILPCVKELS--SDSSQHVRSALATVIMGMAP----ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 216 (412)
Q Consensus 143 ~~~~~~l~~~~--~d~~~~vr~~~~~~l~~l~~----~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~ 216 (412)
+.++..+.... ..++..||-++.+++..-.+ .|..+.-.+.++...++.-+.++.++|.++..+|.++....-.
T Consensus 171 N~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~ 250 (859)
T KOG1241|consen 171 NDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYE 250 (859)
T ss_pred hHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 33555555544 45788999999988876443 3344444556767777777778899999999999999765431
Q ss_pred ---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhh-h--------------Ch--h----hHHHHHHHHHHHHhc-
Q 015150 217 ---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ-L--------------GV--G----FFDDKLGALCMQWLK- 271 (412)
Q Consensus 217 ---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~-~--------------~~--~----~~~~~l~~~l~~~l~- 271 (412)
..+.+.+++.....+++++..|...+++.++.++.- + .+ . ...+.++|.++++|.
T Consensus 251 ~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~k 330 (859)
T KOG1241|consen 251 FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTK 330 (859)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHh
Confidence 112233555556677889999999999888866531 1 11 0 112478899998873
Q ss_pred ------CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHH
Q 015150 272 ------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLP 342 (412)
Q Consensus 272 ------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~ 342 (412)
|++|.+-.+|-.+|.-+.+..|.+ +.+.++|.+.+.+++++|+-|++++-++|.+.+.-... ++....+|
T Consensus 331 qde~~d~DdWnp~kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp 409 (859)
T KOG1241|consen 331 QDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP 409 (859)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHHHhccc-chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence 457889999999999999988876 45689999999999999999999999999998765543 56778999
Q ss_pred HHHhhcCCCCchHHHHHHHHHHHHhhhhch----HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150 343 VVINASKDRVPNIKFNVAKVLQSLIPIVDQ----SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409 (412)
Q Consensus 343 ~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~----~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~ 409 (412)
.+++...|+.-.||.+++++++.++..+.. ..+.+.+++.+.+-++|. +.|..++++++..+++..
T Consensus 410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~ 479 (859)
T KOG1241|consen 410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAA 479 (859)
T ss_pred HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999877643 455666777777766665 889999999999998754
No 12
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.88 E-value=1.1e-19 Score=162.74 Aligned_cols=394 Identities=19% Similarity=0.269 Sum_probs=288.4
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCC-chHHHHHHHHhHHHHhhccCch--hhhhhhHHHHHhhccCC
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDK 78 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~d~ 78 (412)
+-||...+++++.+++.++-+ .++|++...+.+. +..-|..++++...++...+-. .....++.++.+++.|.
T Consensus 490 eYVRnttarafavvasalgip----~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De 565 (1172)
T KOG0213|consen 490 EYVRNTTARAFAVVASALGIP----ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDE 565 (1172)
T ss_pred HHHHHHHHHHHHHHHHHhCcH----HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhccc
Confidence 458899999999999877744 4888888888877 6667888899999988876654 23444777888899999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCccc--c------------------------------------------hHHHHHHhc
Q 015150 79 SWRVRYMVANQLYELCEAVGPEPTRS--D------------------------------------------VVPAYVRLL 114 (412)
Q Consensus 79 ~~~vR~~~~~~l~~l~~~~~~~~~~~--~------------------------------------------l~~~l~~~l 114 (412)
+..||..++.+++.+++..++-.+.+ . ++-.+.+-.
T Consensus 566 ~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf 645 (1172)
T KOG0213|consen 566 QQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREF 645 (1172)
T ss_pred chhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhh
Confidence 99999999999999999888432210 0 111111122
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCH--------------------------------------------------------
Q 015150 115 RDNEAEVRIAAAGKVTKICRILNP-------------------------------------------------------- 138 (412)
Q Consensus 115 ~d~~~~vr~~a~~~l~~l~~~~~~-------------------------------------------------------- 138 (412)
..++.+.++..++.+.+.+...+-
T Consensus 646 ~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~l 725 (1172)
T KOG0213|consen 646 GSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDL 725 (1172)
T ss_pred CCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhh
Confidence 344545555444444433321110
Q ss_pred --------------------------------------------------------------------HHHHHhhhhhHH
Q 015150 139 --------------------------------------------------------------------ELAIQHILPCVK 150 (412)
Q Consensus 139 --------------------------------------------------------------------~~~~~~~~~~l~ 150 (412)
..+...+...++
T Consensus 726 kde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL 805 (1172)
T KOG0213|consen 726 KDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTIL 805 (1172)
T ss_pred ccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHH
Confidence 011122333444
Q ss_pred HhccCCcHHHHHHHHHHHHhcCccc---ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH---HhhHH
Q 015150 151 ELSSDSSQHVRSALATVIMGMAPIL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLL 224 (412)
Q Consensus 151 ~~~~d~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~---~~~~~ 224 (412)
..++++++.||..++..++.++..+ +.+.....+--.+.+.+..+.++|-...+.++..|....|-... .+.++
T Consensus 806 ~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dll 885 (1172)
T KOG0213|consen 806 WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLL 885 (1172)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhc
Confidence 5667778888888877777766443 44444555666667777777888888888888888777764332 36788
Q ss_pred HHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHH---HHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhh
Q 015150 225 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI 301 (412)
Q Consensus 225 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 301 (412)
|.+...+++...+|...++..++.++...+...-...++-+ ++.+|..-+.++|.+|..++|-+.+.+|+. .+
T Consensus 886 PrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq----dV 961 (1172)
T KOG0213|consen 886 PRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ----DV 961 (1172)
T ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH----HH
Confidence 88999999999999999999999998754332112223333 355677888999999999999999999985 46
Q ss_pred HHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--HHHhhH
Q 015150 302 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSI 379 (412)
Q Consensus 302 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i 379 (412)
+..|++.++....+.|.+.--+++.+++.+|.- .++|.+.+-..-|+.+|...++++++.+++..|.. .+.-.+
T Consensus 962 LatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav 1037 (1172)
T KOG0213|consen 962 LATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAV 1037 (1172)
T ss_pred HHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHh
Confidence 777888888888888998888899888888864 58899998889999999999999999999888763 455679
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 380 RPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 380 ~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
.|.|.-.+.|.|.-.|+.++.++..++-
T Consensus 1038 ~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1038 TPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred hHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988764
No 13
>PRK09687 putative lyase; Provisional
Probab=99.88 E-value=2.2e-20 Score=158.02 Aligned_cols=254 Identities=15% Similarity=0.091 Sum_probs=199.9
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhh
Q 015150 67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL 146 (412)
Q Consensus 67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 146 (412)
-.+.+..++.|++..||..++..|+.+.. ..+++.+..+++|+++.+|..++.+|+.+...-.. ....+
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~ 92 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVF 92 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHH
Confidence 44456777799999999999999987763 66788888999999999999999999987642111 22466
Q ss_pred hhHHHh-ccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHH
Q 015150 147 PCVKEL-SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 225 (412)
Q Consensus 147 ~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~ 225 (412)
|.+..+ .+|+++.||..++.++|.+...-. .....+++.+...+.|+++.||..++.+|+.+.. +..++
T Consensus 93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~ 162 (280)
T PRK09687 93 NILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAIP 162 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHHH
Confidence 777766 689999999999999998853211 1123456677778889999999999999976642 35778
Q ss_pred HHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHH
Q 015150 226 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 305 (412)
Q Consensus 226 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l 305 (412)
.+..+++|++|.||..++..|+.+. .+ .+...+.+...+.|+++.||..|+..|+.+-. ...+|.|
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~L 228 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVL 228 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHH
Confidence 9999999999999999999998872 11 23477788899999999999999999987432 4688999
Q ss_pred HhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcC-CCCchHHHHHHHHHHH
Q 015150 306 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK-DRVPNIKFNVAKVLQS 365 (412)
Q Consensus 306 ~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~-d~~~~vR~~~~~~l~~ 365 (412)
.+.+++++ +|..++.+++.+.. +..+|.+..+++ ++++.|+..+.+++.+
T Consensus 229 i~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 229 IKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 99999877 56778888888763 467888888886 7889999999888764
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.87 E-value=6.2e-20 Score=180.95 Aligned_cols=275 Identities=20% Similarity=0.192 Sum_probs=218.1
Q ss_pred HHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchH
Q 015150 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV 107 (412)
Q Consensus 28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 107 (412)
-++.+...+.|+++.+|..|+..|+.+.. ...++.+...+.|+++.||..++..|+.+...... .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence 34556667899999999999999987652 34677888888999999999999999988653221 2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHH
Q 015150 108 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI 187 (412)
Q Consensus 108 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 187 (412)
+.+...++|+++.||..++..|+.+... . .+.+...+.|+++.||..++.+++.+.. .+.
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~ 746 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRAG--D-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES 746 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccC--C-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence 4666788899999999999999886421 1 1345667899999999999999998632 134
Q ss_pred HHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHH
Q 015150 188 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 267 (412)
Q Consensus 188 l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 267 (412)
+..++.|++++||..++.+|+.+...- ....+.+..+++|+++.||.+++..|+.+... +.+.+.+.
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~ 813 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAAT 813 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHH
Confidence 567899999999999999999886531 12367788999999999999999998776421 12334577
Q ss_pred HHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhh
Q 015150 268 QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA 347 (412)
Q Consensus 268 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~ 347 (412)
..+.|+++.||..|+.+|+.+-. +..++.|...++|+++.||..++.+|+.+. + .+...+.+...
T Consensus 814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~a 878 (897)
T PRK13800 814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTA 878 (897)
T ss_pred HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHH
Confidence 88999999999999999986531 346688999999999999999999999962 1 23467777888
Q ss_pred cCCCCchHHHHHHHHHHH
Q 015150 348 SKDRVPNIKFNVAKVLQS 365 (412)
Q Consensus 348 l~d~~~~vR~~~~~~l~~ 365 (412)
++|+++.||..+.++|..
T Consensus 879 l~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 879 LTDSDADVRAYARRALAH 896 (897)
T ss_pred HhCCCHHHHHHHHHHHhh
Confidence 999999999999999864
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.86 E-value=1e-18 Score=165.34 Aligned_cols=390 Identities=16% Similarity=0.183 Sum_probs=235.4
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChH
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWR 81 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~ 81 (412)
|.+|-.|.++++.+.. ....+.+.+.+.+++.|+++.||+.|+.++..+.+..++..... +.+.+.+++.|+++.
T Consensus 93 ~~~~~lAL~~l~~i~~----~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~ 167 (526)
T PF01602_consen 93 PYIRGLALRTLSNIRT----PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPS 167 (526)
T ss_dssp HHHHHHHHHHHHHH-S----HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHH
T ss_pred HHHHHHHHhhhhhhcc----cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcch
Confidence 5677778888877663 45567788888888888888899988888888888754432222 788888888888888
Q ss_pred HHHHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcH
Q 015150 82 VRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ 158 (412)
Q Consensus 82 vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~ 158 (412)
|+.+++..+..+ + ..++ .....++..+.+.+.++++..+...+..+..++...........+++.+..++++.++
T Consensus 168 V~~~a~~~l~~i-~-~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~ 245 (526)
T PF01602_consen 168 VVSAALSLLSEI-K-CNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSP 245 (526)
T ss_dssp HHHHHHHHHHHH-H-CTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-c-cCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhcccc
Confidence 888888888887 1 1111 1122334444444466666666666655554433211111002344444444444444
Q ss_pred HHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhh--------------------
Q 015150 159 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-------------------- 218 (412)
Q Consensus 159 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~-------------------- 218 (412)
.|+..++.++..+.... .....+++.+..++.++++++|..+++.+..++....+..
T Consensus 246 ~V~~e~~~~i~~l~~~~---~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~ 322 (526)
T PF01602_consen 246 SVVYEAIRLIIKLSPSP---ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRK 322 (526)
T ss_dssp HHHHHHHHHHHHHSSSH---HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHH
T ss_pred HHHHHHHHHHHHhhcch---HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHH
Confidence 44444444444333211 1223444444455554445555555554444433321000
Q ss_pred -------------HHhhHHHHHHHHhcC-CCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 015150 219 -------------LSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANN 284 (412)
Q Consensus 219 -------------~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 284 (412)
-...+++.+.+.+.+ .+..+|..++..++.++...... .+..++.+++++......+...++..
T Consensus 323 ~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~ 400 (526)
T PF01602_consen 323 KALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINV 400 (526)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHH
T ss_pred HHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHH
Confidence 012344444444432 25556666666666666555321 23455556666666555666666666
Q ss_pred HHHHHHHhChhhhhhhhHHHHHhhhcC-CchHHHHHHHHHHHHhccccch-hHHHHhhHHHHHhhcCCCCchHHHHHHHH
Q 015150 285 VKRLAEEFGPDWAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASKDRVPNIKFNVAKV 362 (412)
Q Consensus 285 l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~~~~vR~~~~~~ 362 (412)
+..++..... .....+..+.+.+.+ .+...+..+++.+|..++.... + ....++..+.+.+.+..+.||..++.+
T Consensus 401 i~~ll~~~~~--~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~ 477 (526)
T PF01602_consen 401 IRDLLSNNPE--LREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTA 477 (526)
T ss_dssp HHHHHHHSTT--THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHhhcChh--hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 6666554322 133456666666665 4567899999999999887765 3 456777788888888888999999999
Q ss_pred HHHHhhhhchHHHHhhHHHHHHhhcC--CCCccHHHHHHHHHHHhH
Q 015150 363 LQSLIPIVDQSVVEKSIRPCLVELSE--DPDVDVRFFATQALQSKD 406 (412)
Q Consensus 363 l~~l~~~~~~~~~~~~i~~~l~~l~~--d~~~~vr~~a~~al~~~~ 406 (412)
+.++....+.....+.+.+.+..+.+ +.+.+||..|..-+.-+-
T Consensus 478 ~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 478 LAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence 99999876654455688889988877 889999999998776553
No 16
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=5.9e-18 Score=150.24 Aligned_cols=378 Identities=17% Similarity=0.169 Sum_probs=285.3
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhh-hhhhHHHHHhhccCCC
Q 015150 1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC-VAHILPVIVNFSQDKS 79 (412)
Q Consensus 1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~-~~~l~~~l~~l~~d~~ 79 (412)
++.+|+++..++..+...... .-...+.+.+.++++......|..+...+..+....+-+.. ...++..+....+|..
T Consensus 109 s~~~q~~~~~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~ 187 (569)
T KOG1242|consen 109 SKSVQRAVSTCLPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKK 187 (569)
T ss_pred cHHHHHHHHHHhhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccc
Confidence 467899999999988876543 33455777777778888888899999999888887665433 3447777788888865
Q ss_pred hH-HHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCC
Q 015150 80 WR-VRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS 156 (412)
Q Consensus 80 ~~-vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~ 156 (412)
.. .|+.+..+.......++... +.-.++|.+.....|....||.+|..+...+...++..-... ++|.+...+.+.
T Consensus 188 ~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-llpsll~~l~~~ 266 (569)
T KOG1242|consen 188 SALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL-LLPSLLGSLLEA 266 (569)
T ss_pred hhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH-hhhhhHHHHHHH
Confidence 54 45556667777777777432 334577788888899999999999999999988887765543 455555544445
Q ss_pred cHHHHHHHHHHHHhcCcccChh--HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCC
Q 015150 157 SQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR 234 (412)
Q Consensus 157 ~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~ 234 (412)
.|+-+.++++.++.++...++. .....++|.+.+.+.|..++||.++..++..++..+....+ ..++|.+.+.+.|+
T Consensus 267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ip~Lld~l~dp 345 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKIIPTLLDALADP 345 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHhcCc
Confidence 9999999999999888665543 33478999999999999999999999999999998876665 78899999999998
Q ss_pred CchHHHHHHHHhhH--HHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC-hh---hhhhhhHHHHHhh
Q 015150 235 HWRVRLAIIEYIPL--LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG-PD---WAMQHIVPQVLEM 308 (412)
Q Consensus 235 ~~~vr~~~~~~l~~--l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~---~~~~~~l~~l~~~ 308 (412)
..++.... ..++. ++..... .....++|++.+.+.+.+...++.++..++.++.... +. .+...++|.+...
T Consensus 346 ~~~~~e~~-~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~ 423 (569)
T KOG1242|consen 346 SCYTPECL-DSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKEN 423 (569)
T ss_pred ccchHHHH-Hhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHH
Confidence 86655432 22211 1111111 2346689999999999999999999999999998773 32 2456788888888
Q ss_pred hcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCc-hHHHHHHHHHHHHhhhhchHHHHhhHHHHHHh
Q 015150 309 INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE 385 (412)
Q Consensus 309 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~-~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~ 385 (412)
+.++.+.+|..+.++++.+.+..|...+ +...|.+.+.+++... .-|..+++.++.....++.+.+.+ ++|.+..
T Consensus 424 ~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~-~~~~~~a 499 (569)
T KOG1242|consen 424 LDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVED-ILPEILA 499 (569)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHH-HHHHHHH
Confidence 8899899999999999999999998866 8899999998876543 347888888988888777765543 4444333
No 17
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.84 E-value=2.3e-18 Score=151.52 Aligned_cols=393 Identities=19% Similarity=0.236 Sum_probs=274.5
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCC-chHHHHHHHHhHHHHhhccCchh--hhhhhHHHHHhhccCC
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQD--CVAHILPVIVNFSQDK 78 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~i~~~~~~~~--~~~~l~~~l~~l~~d~ 78 (412)
+-||....++.+.+++.++-++ ++|++..++.+. +..-|..++++...++..++-.. ....++..+.+++.|.
T Consensus 295 eYVRnvt~ra~~vva~algv~~----llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~ 370 (975)
T COG5181 295 EYVRNVTGRAVGVVADALGVEE----LLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDR 370 (975)
T ss_pred HHHHHHHHHHHHHHHHhhCcHH----HHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhcc
Confidence 4589999999999998877544 889998888877 56678899999999998877653 3455788888999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcc--cc------------------------------------------hHHHHHHhc
Q 015150 79 SWRVRYMVANQLYELCEAVGPEPTR--SD------------------------------------------VVPAYVRLL 114 (412)
Q Consensus 79 ~~~vR~~~~~~l~~l~~~~~~~~~~--~~------------------------------------------l~~~l~~~l 114 (412)
+..||..++.+++.+++..++-... +. ....+.+.+
T Consensus 371 ~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref 450 (975)
T COG5181 371 SRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREF 450 (975)
T ss_pred ceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHh
Confidence 9999999999999999988854321 00 111122222
Q ss_pred CCChHHHHHHHHHHH---------------------------------------------HHHHHhhCH-----------
Q 015150 115 RDNEAEVRIAAAGKV---------------------------------------------TKICRILNP----------- 138 (412)
Q Consensus 115 ~d~~~~vr~~a~~~l---------------------------------------------~~l~~~~~~----------- 138 (412)
+.++.+.+....... ..+++..+.
T Consensus 451 ~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~ 530 (975)
T COG5181 451 KSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYY 530 (975)
T ss_pred CCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhc
Confidence 222221111110000 000000000
Q ss_pred --------------------------------------------------------------------HHHHHhhhhhHH
Q 015150 139 --------------------------------------------------------------------ELAIQHILPCVK 150 (412)
Q Consensus 139 --------------------------------------------------------------------~~~~~~~~~~l~ 150 (412)
.++...++..++
T Consensus 531 ~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL 610 (975)
T COG5181 531 SDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTIL 610 (975)
T ss_pred cCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHH
Confidence 011222334445
Q ss_pred HhccCCcHHHHHHHHHHHHhcCcc---cChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH---HhhHH
Q 015150 151 ELSSDSSQHVRSALATVIMGMAPI---LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLL 224 (412)
Q Consensus 151 ~~~~d~~~~vr~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~---~~~~~ 224 (412)
+++.++.+.||..++..++.++.. .|.......+-..+.+-+..+.++|-...++++..+....+-... ...++
T Consensus 611 ~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~il 690 (975)
T COG5181 611 KLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGIL 690 (975)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhcc
Confidence 556666666666666655555433 344433445555556666666677666666666666555443321 24677
Q ss_pred HHHHHHhcCCCchHHHHHHHHhhHHHhhhC----hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhh
Q 015150 225 PAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300 (412)
Q Consensus 225 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 300 (412)
|.+...+.++..++....+..++.++...+ ...+.. +.--++.+|..-+.++|.+|..++|-+.+.+|+. .
T Consensus 691 P~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR-IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----d 765 (975)
T COG5181 691 PSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR-ICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ----D 765 (975)
T ss_pred ccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH-HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH----H
Confidence 888888888888898888888888876543 222322 2222455678889999999999999999999985 4
Q ss_pred hHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--HHHhh
Q 015150 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKS 378 (412)
Q Consensus 301 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~ 378 (412)
++..+++.++....+.|.+..-+++.+++.+|.- .++|.+..-...|+.+|...+++++..+++..|.. .+.-.
T Consensus 766 vL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~ 841 (975)
T COG5181 766 VLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYS 841 (975)
T ss_pred HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888889999999999999988875 57899998888999999999999999999988875 45568
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 379 IRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 379 i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
+.|.+.-.++|.|+-.|+.++..+..+.-
T Consensus 842 itPlleDAltDrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 842 ITPLLEDALTDRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred hhHHHHhhhcccchHHHHHHHHHHHHHhc
Confidence 99999999999999999999998887754
No 18
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.84 E-value=2.5e-17 Score=147.82 Aligned_cols=383 Identities=16% Similarity=0.167 Sum_probs=248.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch----hhhhhhHHHHHhhccCCChHHHHHHHH
Q 015150 13 GKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ----DCVAHILPVIVNFSQDKSWRVRYMVAN 88 (412)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~----~~~~~l~~~l~~l~~d~~~~vR~~~~~ 88 (412)
-.++..++.......++. -+.|+.+..|.+.+.....+...++.. .....++.-++..+++.+.... ..+.
T Consensus 706 v~ia~KvG~~~~v~R~v~----~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~ 780 (1172)
T KOG0213|consen 706 VEIAAKVGSDPIVSRVVL----DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLL 780 (1172)
T ss_pred HHHHHHhCchHHHHHHhh----hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhh
Confidence 345555554443333332 367888889999999999999887763 3344466656555554333333 5677
Q ss_pred HHHHHHHHhCC--CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHH---hhCHHHHHHhhhhhHHHhccCCcHHHHHH
Q 015150 89 QLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR---ILNPELAIQHILPCVKELSSDSSQHVRSA 163 (412)
Q Consensus 89 ~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~~~~d~~~~vr~~ 163 (412)
.++.++..++. ..+.+++...+...++++.+.||..|+..++.++. .++++..+.++--.+.+.+....++|--.
T Consensus 781 gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgs 860 (1172)
T KOG0213|consen 781 GFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGS 860 (1172)
T ss_pred hHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHH
Confidence 88888888876 55667888888999999999999999999988765 45677777777778888888889999988
Q ss_pred HHHHHHhcCcccChhHH---HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc----hhhHHhhHHHHHHHHhcCCCc
Q 015150 164 LATVIMGMAPILGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVELAEDRHW 236 (412)
Q Consensus 164 ~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~----~~~~~~~~~~~l~~~~~d~~~ 236 (412)
+..++..|....|-... .+.++|.+...+++.+.-|+.+++..++.|+..-. ..++ -.+.--++++++..+.
T Consensus 861 ILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREW-MRIcfeLlelLkahkK 939 (1172)
T KOG0213|consen 861 ILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREW-MRICFELLELLKAHKK 939 (1172)
T ss_pred HHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHH-HHHHHHHHHHHHHHHH
Confidence 88888877766543221 36889999999999999999999999999986632 2233 2344456677788888
Q ss_pred hHHHHHHHHhhHHHhhhChhhHHHHH-------------------------------HHHHHHHhcCchhHHHHHHHHHH
Q 015150 237 RVRLAIIEYIPLLASQLGVGFFDDKL-------------------------------GALCMQWLKDKVYSIRDAAANNV 285 (412)
Q Consensus 237 ~vr~~~~~~l~~l~~~~~~~~~~~~l-------------------------------~~~l~~~l~d~~~~vr~~a~~~l 285 (412)
.+|+++...++.+++.+|++.....+ +|.+++--.-++..|+...++++
T Consensus 940 ~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred HHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHH
Confidence 99999999999999999986433222 23333333344555555555555
Q ss_pred HHHHHHhChh--hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhcc---ccchhHHHHhhHHHHHhhcCCCCchHHHHHH
Q 015150 286 KRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP---VMGSEITCSQLLPVVINASKDRVPNIKFNVA 360 (412)
Q Consensus 286 ~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~---~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~ 360 (412)
.-+.+..|+- .+...+.|.+...+.|.+...|+.++.++..++- .+|.+...-+++..+....-+++|.|-.+..
T Consensus 1020 sf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~ 1099 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFD 1099 (1172)
T ss_pred HHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHH
Confidence 5555554431 1233455555555555555556666665555542 2233344445555555555555555555555
Q ss_pred HHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHh
Q 015150 361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK 405 (412)
Q Consensus 361 ~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~ 405 (412)
.++..+...+|+..+.++ +.+-+-+|...||..-...+..+
T Consensus 1100 e~~eg~r~~Lg~~~~~~Y----~~QGLFHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1100 EAMEGLRVALGPQAMLKY----CLQGLFHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred HHHHHHHHHhchHHHHHH----HHHhccCcHHHHHHHHHHHHHhH
Confidence 555555555555333222 22323345555555555444443
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.83 E-value=4.5e-17 Score=154.22 Aligned_cols=366 Identities=19% Similarity=0.232 Sum_probs=249.5
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCccc
Q 015150 25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS 104 (412)
Q Consensus 25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~ 104 (412)
.-.+.+.+.+-++++++.+|..|++.++.+. ..+..+.+.+.+.+++.|+++.||+.|+.++.++....++.....
T Consensus 77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~ 152 (526)
T PF01602_consen 77 LILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE 152 (526)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH
Confidence 4446677777788999999999999999887 334677899999999999999999999999999998754433223
Q ss_pred chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHH
Q 015150 105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 181 (412)
Q Consensus 105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 181 (412)
+++.+.+++.|+++.|+.+|+.++..+ ...++ .....+...+.+.+.+.++..+..+++.+..++..-......
T Consensus 153 -~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~ 229 (526)
T PF01602_consen 153 -LIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK 229 (526)
T ss_dssp -HHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH
T ss_pred -HHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH
Confidence 899999999999999999999999988 22333 234445566666668899999999999999887543332211
Q ss_pred HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHH
Q 015150 182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK 261 (412)
Q Consensus 182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 261 (412)
..+++.+..++++.++.|+..+++.+..+... ......+.+.+..++.++++.+|..++..+..++....+... .
T Consensus 230 ~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~ 304 (526)
T PF01602_consen 230 NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--N 304 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--T
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh--h
Confidence 56788888888888899998888888766543 224577889999999999999999999999888776533222 2
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcC-CchHHHHHHHHHHHHhccccchhH--H--
Q 015150 262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSEI--T-- 336 (412)
Q Consensus 262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~--~-- 336 (412)
....+..+..|++..+|..++..+..++..-. ...+++.+.+.+.+ .+..+|..++..++.++..+.... +
T Consensus 305 ~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n----~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~ 380 (526)
T PF01602_consen 305 QSLILFFLLYDDDPSIRKKALDLLYKLANESN----VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVD 380 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHH
T ss_pred hhhhhheecCCCChhHHHHHHHHHhhcccccc----hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHH
Confidence 22233344458888999999988888775332 34477777777743 366688888888888775553320 0
Q ss_pred -------------------------------HHhhHHHHHhhcCC-CCchHHHHHHHHHHHHhhhhch-HHHHhhHHHHH
Q 015150 337 -------------------------------CSQLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQ-SVVEKSIRPCL 383 (412)
Q Consensus 337 -------------------------------~~~il~~l~~~l~d-~~~~vR~~~~~~l~~l~~~~~~-~~~~~~i~~~l 383 (412)
...++..+...+.+ ..+.++..+++.+|+.+...+. . ....++..+
T Consensus 381 ~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l 459 (526)
T PF01602_consen 381 TLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSL 459 (526)
T ss_dssp HHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHH
T ss_pred HHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHH
Confidence 12233334444333 3344555555555555544433 2 333444444
Q ss_pred HhhcCCCCccHHHHHHHHHHHhHH
Q 015150 384 VELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 384 ~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
.....+.+.+||.....++.++..
T Consensus 460 ~~~~~~~~~~vk~~ilt~~~Kl~~ 483 (526)
T PF01602_consen 460 IENFIEESPEVKLQILTALAKLFK 483 (526)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHhhccccHHHHHHHHHHHHHHHh
Confidence 444445555555555555555543
No 20
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=5.3e-17 Score=141.55 Aligned_cols=367 Identities=16% Similarity=0.217 Sum_probs=285.0
Q ss_pred HHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch--hhhhhhHHHHHhhccCC
Q 015150 5 RRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDK 78 (412)
Q Consensus 5 R~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~d~ 78 (412)
|++++..+.++.+.+-. +.+...+-.+...+..+.+...|+.+..++..++-.++.+ .+...++|.+...++|+
T Consensus 17 RKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~ 96 (675)
T KOG0212|consen 17 RKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQ 96 (675)
T ss_pred HHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCc
Confidence 78888889988886432 2333333346677778888888888887777776666653 36777899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH----HHHHhhhhhHHHh
Q 015150 79 SWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKEL 152 (412)
Q Consensus 79 ~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~ 152 (412)
+.+||..+|+.+-+++.....+. +.++++..+.++..|.+..||.+| +.+..+.+-+..+ ...+.++|.+...
T Consensus 97 d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~er 175 (675)
T KOG0212|consen 97 DSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRER 175 (675)
T ss_pred cceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHHHH
Confidence 99999999999999998776554 457889999999999999998765 5555555433221 2346689999999
Q ss_pred ccCCcHHHHHHHHHHHHhcCcccChhHH--HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch--hh-HHhhHHHHH
Q 015150 153 SSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DL-LSQSLLPAI 227 (412)
Q Consensus 153 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~--~~-~~~~~~~~l 227 (412)
+.+.++..|...+.++..+-...+-+.+ ...+++.+.+++.|+.++||.-+-..++.+...+.. .. -.+..++.+
T Consensus 176 iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vl 255 (675)
T KOG0212|consen 176 IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVL 255 (675)
T ss_pred HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhc
Confidence 9999999999999999887655544432 367889999999999999999888888888777642 22 235677888
Q ss_pred HHHhcCCCchHHHHHHHHhhHHHhhhChhhH--HHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHhChhh-----hhh
Q 015150 228 VELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDW-----AMQ 299 (412)
Q Consensus 228 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~-----~~~ 299 (412)
..-+.++++.++..++.++..+.+..|...+ ...++..++.++.|... .++..+...=+.+.+.++.+. -..
T Consensus 256 v~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~ 335 (675)
T KOG0212|consen 256 VPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYG 335 (675)
T ss_pred cccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchH
Confidence 8888899999999999999999998887653 34566666777777766 577777666555555554332 234
Q ss_pred hhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150 300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 372 (412)
Q Consensus 300 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 372 (412)
.++..+.+.+.+.....|.+++..+..+-...+.+ .+...+.+.+++.+.|++..|-..++..+..++..-..
T Consensus 336 ~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 336 SIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 68888999999999999999999999998888776 36778999999999999999999999999999865443
No 21
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.82 E-value=5.4e-16 Score=142.83 Aligned_cols=410 Identities=16% Similarity=0.215 Sum_probs=280.0
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc-------hhhhhhhHHHHHh
Q 015150 1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-------QDCVAHILPVIVN 73 (412)
Q Consensus 1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~-------~~~~~~l~~~l~~ 73 (412)
+++|++-|++|+|.++++++++++...+-.+...++...+ ..|..+.-.+..+...++| ....+.+.|.+.+
T Consensus 60 ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~ke-q~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~ 138 (1233)
T KOG1824|consen 60 NGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKE-QLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQ 138 (1233)
T ss_pred CcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchh-hhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHH
Confidence 3789999999999999999887766655556555565554 4566555555555555554 1233456666665
Q ss_pred hc--cCCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhH
Q 015150 74 FS--QDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCV 149 (412)
Q Consensus 74 l~--~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l 149 (412)
.. +.+...++-.++..++.+...+|.-. +..-++..+.--+..+...||+.|+.+++.++..++.+.+...+-..+
T Consensus 139 ~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll 218 (1233)
T KOG1824|consen 139 AISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLL 218 (1233)
T ss_pred HhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 53 24556689999999988887776432 334566666667788889999999999999999998887765444444
Q ss_pred HHhccCCcHHHHHHHHHHHHhcCcccChhHH--HHhhHHHHHHhh---cccChHHHHHHHHHHHHHHHhhchhhH--Hhh
Q 015150 150 KELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDLL--SQS 222 (412)
Q Consensus 150 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l---~d~~~~vr~~~~~~l~~i~~~~~~~~~--~~~ 222 (412)
..+.+..+...-+..+++++.++...|.+.. ...++|.+.+.+ +.++++.|...+++++.+....+.+.. .+.
T Consensus 219 ~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pe 298 (1233)
T KOG1824|consen 219 KGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPE 298 (1233)
T ss_pred hccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchH
Confidence 4455445554555577888888877766543 367889998888 667899999999999999877654321 222
Q ss_pred HHHHHHHHh----------------------------------cCCCchHHHHHHHHhhHHHhhhCh--hhHHHHHHHHH
Q 015150 223 LLPAIVELA----------------------------------EDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALC 266 (412)
Q Consensus 223 ~~~~l~~~~----------------------------------~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l 266 (412)
++....+.+ +|-+|+||+++++++..+...... ..+.+.+.|.+
T Consensus 299 i~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~l 378 (1233)
T KOG1824|consen 299 IINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPAL 378 (1233)
T ss_pred HHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHH
Confidence 222222210 122599999999999887654321 23556678888
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHhCh----------------h---h-------------------------------
Q 015150 267 MQWLKDKVYSIRDAAANNVKRLAEEFGP----------------D---W------------------------------- 296 (412)
Q Consensus 267 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~----------------~---~------------------------------- 296 (412)
+..+++....|+...+.++-.+....++ . +
T Consensus 379 I~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~l 458 (1233)
T KOG1824|consen 379 ISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLL 458 (1233)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHH
Confidence 8888888888888877776666554321 0 0
Q ss_pred --------------hhhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhccccchhHH---HHhhHHHHHhhcCCCCchHHH
Q 015150 297 --------------AMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSEIT---CSQLLPVVINASKDRVPNIKF 357 (412)
Q Consensus 297 --------------~~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~---~~~il~~l~~~l~d~~~~vR~ 357 (412)
....++|.+...++|.+ ...+..++-.+..+....+++.| ...+.|.+.....|+.+.+-.
T Consensus 459 L~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisa 538 (1233)
T KOG1824|consen 459 LTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISA 538 (1233)
T ss_pred HHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhH
Confidence 01124444444555544 44566666666555555666533 445777888889999999999
Q ss_pred HHHHHHHHHhhhhch---------HHHHhhHHHHHHh-h-cCCCCccHHHHHHHHHHHhHHhhhC
Q 015150 358 NVAKVLQSLIPIVDQ---------SVVEKSIRPCLVE-L-SEDPDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 358 ~~~~~l~~l~~~~~~---------~~~~~~i~~~l~~-l-~~d~~~~vr~~a~~al~~~~~~~~~ 411 (412)
.++.+...+.+.+.+ ..+...+.....+ + .+|.|.+||.+|+.+++.+...+|+
T Consensus 539 EAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD 603 (1233)
T KOG1824|consen 539 EALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD 603 (1233)
T ss_pred HHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh
Confidence 999988888765433 2334445554444 2 6899999999999999999998885
No 22
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.81 E-value=4.1e-18 Score=160.22 Aligned_cols=309 Identities=19% Similarity=0.236 Sum_probs=228.3
Q ss_pred HHHHHHHhccC-CchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC------CC
Q 015150 28 IMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG------PE 100 (412)
Q Consensus 28 l~~~l~~l~~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~------~~ 100 (412)
+++++...+.. .....|..|++.+..++.+..++.....++|++..+.+|+...||..++..|..+..... ..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan 502 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN 502 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence 33444444332 234567788888888888888888888899999999999999999988888888766543 22
Q ss_pred CcccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHH--hccCCcHHHHHHHHHHHHhcCcccCh
Q 015150 101 PTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE--LSSDSSQHVRSALATVIMGMAPILGK 177 (412)
Q Consensus 101 ~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~--~~~d~~~~vr~~~~~~l~~l~~~~~~ 177 (412)
.+.++++|.+..++.| ....||.+-+.+|+.+++....- .+ .-..+.. +.+|++.+ ...+..+.
T Consensus 503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF--le-~~q~~~~~g~~n~~nse----------t~~~~~~~ 569 (1431)
T KOG1240|consen 503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF--LE-LTQELRQAGMLNDPNSE----------TAPEQNYN 569 (1431)
T ss_pred hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHH--HH-HHHHHHhcccccCcccc----------cccccccc
Confidence 3567888999888888 66788888888888887743211 00 0001111 12333332 00000000
Q ss_pred ---hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC
Q 015150 178 ---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 254 (412)
Q Consensus 178 ---~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 254 (412)
......+-..+..++.|+++.||.+.++++..++..+|.+.-.+.+++++..+++|++|+.|.++.+.+..++-..|
T Consensus 570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG 649 (1431)
T KOG1240|consen 570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG 649 (1431)
T ss_pred hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence 11112334566778999999999999999999999999887777899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC-hhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch
Q 015150 255 VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG-PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS 333 (412)
Q Consensus 255 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 333 (412)
.....+.++|++.+.|.|....|-..|+.++..+++.-- .+....+++..+..++.+|+..+|.+++..+..+...++.
T Consensus 650 ~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 650 WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 888889999999999999999999999999999987421 1223456777788889999988999999999999888887
Q ss_pred hHHHHhhHHHHHhhcC
Q 015150 334 EITCSQLLPVVINASK 349 (412)
Q Consensus 334 ~~~~~~il~~l~~~l~ 349 (412)
-...-.++|.+-.++.
T Consensus 730 advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 730 ADVYCKLMPLIRPFLE 745 (1431)
T ss_pred hhheEEeehhhHHhhh
Confidence 6555556665554444
No 23
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=2.4e-17 Score=143.68 Aligned_cols=376 Identities=17% Similarity=0.171 Sum_probs=286.9
Q ss_pred HHHhccCCchHHHHHHHHhHHHHhhccCchh---hhhhhHH-HHHhhccCCChHHHHHHHHHHHHHHHHhCCCC--cccc
Q 015150 32 FEELTQDDQDSVRLLAVEGCGALGKLLEPQD---CVAHILP-VIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSD 105 (412)
Q Consensus 32 l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~---~~~~l~~-~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~ 105 (412)
+.+-+.|+-.+-|++|+.-+..+.+.+-... ....++. +...+...++..-|+.+...++..+-.+|.+. +...
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 3445778888889999999999888754322 2222333 55566677788888899888888877777554 4567
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc----ChhH
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL----GKDA 179 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~----~~~~ 179 (412)
++|.+..+++|.+..||..|++.+..+++....+ .+.+.++..+.++..|++..||..+ +.+..+.... ....
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tF 163 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTF 163 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhcccccccc
Confidence 8999999999999999999999999999987665 4567788899999999999998854 5555444322 1123
Q ss_pred HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhh--HHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC--h
Q 015150 180 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--V 255 (412)
Q Consensus 180 ~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~ 255 (412)
..+.++|.+..-+.+.++.+|...++.+..+-..-+.+. +.+.+++.+.+++.|++..||..+-.+++.+...+. +
T Consensus 164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P 243 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP 243 (675)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 346889999999999999999999988887755544333 357789999999999999999887777777665542 2
Q ss_pred hh-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh--hhhhHHHHHhhhcCCch-HHHHHHHHHHHHhcccc
Q 015150 256 GF-FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINNPHY-LYRMTILQAISLLAPVM 331 (412)
Q Consensus 256 ~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~l~~l~~~~~~~~~-~~r~~~~~~l~~l~~~~ 331 (412)
.. -.+...+++...+..+++.++..|+..+.++++..|.+.+ ...++..++..+.++.. .++..+...-+.+...+
T Consensus 244 ~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 244 SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 22 2355788888889999999999999999999987776643 24566666666666655 36666655544454444
Q ss_pred chh-----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH--HHhhHHHHHHhhcCCCCccHHHHHHHHHHH
Q 015150 332 GSE-----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSEDPDVDVRFFATQALQS 404 (412)
Q Consensus 332 ~~~-----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~i~~~l~~l~~d~~~~vr~~a~~al~~ 404 (412)
+.+ .-...++..+.+.+.+.....|.++++++..+....+.+. +.+.+.+.|.+.++|++.+|-..+.+.+..
T Consensus 324 s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 324 SSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS 403 (675)
T ss_pred hhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 432 2345789999999999999999999999999999888873 557899999999999999999999988888
Q ss_pred hHHh
Q 015150 405 KDQV 408 (412)
Q Consensus 405 ~~~~ 408 (412)
++..
T Consensus 404 i~~s 407 (675)
T KOG0212|consen 404 ICSS 407 (675)
T ss_pred HhcC
Confidence 8763
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.80 E-value=2.8e-16 Score=159.62 Aligned_cols=375 Identities=13% Similarity=0.133 Sum_probs=285.7
Q ss_pred HHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC---CC
Q 015150 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EP 101 (412)
Q Consensus 28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~ 101 (412)
..+.+..++...+.+++..++.++..++..-.. .......+|.+.+++.+++..+|..++..++.++..... ..
T Consensus 405 aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aI 484 (2102)
T PLN03200 405 AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAI 484 (2102)
T ss_pred chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345566667777788999999999998866322 122344788999999999999999999999998752221 11
Q ss_pred cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH--HHH-HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh
Q 015150 102 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELA-IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD 178 (412)
Q Consensus 102 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 178 (412)
.....+|.+.+++.+++..+|+.|+.+++.++..-.+ ..+ ....+|.+.+++++.++.++..+++++..+...-..
T Consensus 485 ieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~- 563 (2102)
T PLN03200 485 TAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA- 563 (2102)
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-
Confidence 2346899999999999999999999999999874211 122 346889999999999999999999999998753222
Q ss_pred HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH------HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhh
Q 015150 179 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 252 (412)
Q Consensus 179 ~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 252 (412)
..++.+..++..+++.++..++..++.+....+.+.. ....+|.+.+++++++.+++..++..+..++..
T Consensus 564 ----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~ 639 (2102)
T PLN03200 564 ----ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS 639 (2102)
T ss_pred ----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 2346677778777888999899999888765543321 235789999999999999999999999888764
Q ss_pred hCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh----hhhhhHHHHHhhhcCCchHHHHHHHHHHH
Q 015150 253 LGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAIS 325 (412)
Q Consensus 253 ~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~~~~~~~~~r~~~~~~l~ 325 (412)
... .......+|.++.++++.+.++++.++.+|+.+......+. .....+|.|.+++++++..+++.++.++.
T Consensus 640 ~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALa 719 (2102)
T PLN03200 640 RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALA 719 (2102)
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence 322 22345568888999999999999999999999986433221 23458899999999999999999999999
Q ss_pred Hhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH-H-----HhhHHHHHHhhcCCCCccHHHH
Q 015150 326 LLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV-V-----EKSIRPCLVELSEDPDVDVRFF 397 (412)
Q Consensus 326 ~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~-~-----~~~i~~~l~~l~~d~~~~vr~~ 397 (412)
.++..-... ......+|.+..++++.++++|..++++|..++.....+. + ....+..|..+++-.|.+.-..
T Consensus 720 nLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~ 799 (2102)
T PLN03200 720 NLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSAT 799 (2102)
T ss_pred HHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhH
Confidence 998654322 3446789999999999999999999999999988766433 2 2345566666666677766555
Q ss_pred --HHHHHHHhHH
Q 015150 398 --ATQALQSKDQ 407 (412)
Q Consensus 398 --a~~al~~~~~ 407 (412)
+..++..+++
T Consensus 800 ~~al~~l~~l~~ 811 (2102)
T PLN03200 800 SEALEALALLAR 811 (2102)
T ss_pred HHHHHHHHHHHh
Confidence 7788777766
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.79 E-value=3.6e-16 Score=158.79 Aligned_cols=401 Identities=13% Similarity=0.089 Sum_probs=298.4
Q ss_pred chhHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhc
Q 015150 2 PMVRRSAATNLGKFAATVE---AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFS 75 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~ 75 (412)
+.+|..++.++..++..-. ........+|.+.+++.++++.++..|+..++.++..... .......+|.+.+++
T Consensus 418 ~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL 497 (2102)
T PLN03200 418 ADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLL 497 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 4577888888888775311 1122333678888889988889999999999999875432 122355899999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCC--CCc-ccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHh
Q 015150 76 QDKSWRVRYMVANQLYELCEAVGP--EPT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL 152 (412)
Q Consensus 76 ~d~~~~vR~~~~~~l~~l~~~~~~--~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ 152 (412)
.+++..+|+.++-+|++++..-.+ ... ....+|.+.+++++.++.++..|+.+|..+......+ .++.+..+
T Consensus 498 ~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~L 572 (2102)
T PLN03200 498 ETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTAL 572 (2102)
T ss_pred cCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHHH
Confidence 999999999999999999863110 011 2357889999999999999999999999998765444 33556677
Q ss_pred ccCCcHHHHHHHHHHHHhcCcccChhHH------HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhH
Q 015150 153 SSDSSQHVRSALATVIMGMAPILGKDAT------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSL 223 (412)
Q Consensus 153 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~ 223 (412)
+..+++.++..++..++.+......+.. ...-+|.+.++++.+++.+++.|+..+..++..-.. .......
T Consensus 573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~aga 652 (2102)
T PLN03200 573 LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI 652 (2102)
T ss_pred hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence 7777788888888888887654433221 235789999999999999999999999998764221 1234567
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh--hhh
Q 015150 224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--DWA 297 (412)
Q Consensus 224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~ 297 (412)
+|.+..++.+.+..++..++.++..+........ .....+|.+.+++++.+..++..|+.+|..++..-.. +..
T Consensus 653 IpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~ 732 (2102)
T PLN03200 653 INPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEAL 732 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHH
Confidence 8889999999999999999999999987443221 2244688899999999999999999999999875432 223
Q ss_pred hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH------HHHhhHHHHHhhcCCCCchHHHH--HHHHHHHHhhh
Q 015150 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI------TCSQLLPVVINASKDRVPNIKFN--VAKVLQSLIPI 369 (412)
Q Consensus 298 ~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~------~~~~il~~l~~~l~d~~~~vR~~--~~~~l~~l~~~ 369 (412)
....++.+.+++++.+...|+.++.++..++...+.+. -....+..+..+|+..+.+.-.. ++.++..+++.
T Consensus 733 ~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 733 AEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred hcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 46778999999999999999999999999998887554 12345667777887776666655 88888888764
Q ss_pred hch------HHH-H---hhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 370 VDQ------SVV-E---KSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 370 ~~~------~~~-~---~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
-+. .+. . ..=+..|..++.+..+.+...|.+.+..+++
T Consensus 813 ~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 813 KGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred cccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 211 111 1 1223334344488999999999999998875
No 26
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.79 E-value=2e-16 Score=139.46 Aligned_cols=375 Identities=16% Similarity=0.180 Sum_probs=254.4
Q ss_pred HHHHHHHhccCCchHHHHHHHHhHHHHhhccCc----hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC--CCC
Q 015150 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEP 101 (412)
Q Consensus 28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~----~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~--~~~ 101 (412)
+..-+.+..+|+.+..|.+++.....+...++. +.....++.-++..+++.+..+. ....+++.+....+ -..
T Consensus 522 v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~-~il~~f~tv~vsl~~r~kp 600 (975)
T COG5181 522 VSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVG-LILPCFSTVLVSLEFRGKP 600 (975)
T ss_pred HHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccccc-EEEecccceeeehhhccCc
Confidence 334444558888888999998888888877765 33445566666655554433222 12233333322222 223
Q ss_pred cccchHHHHHHhcCCChHHHHHHHHHHHHHHHH---hhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh
Q 015150 102 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR---ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD 178 (412)
Q Consensus 102 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 178 (412)
+...++..+...++++.+.||..|+...+.+++ .+++.....++-..+.+.+....++|--.+..++..+....+-.
T Consensus 601 ~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 601 HLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred chHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 456788888899999999999999998887765 45666666777777778888888999888888887776544332
Q ss_pred H---HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc----hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHh
Q 015150 179 A---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 251 (412)
Q Consensus 179 ~---~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~----~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 251 (412)
. -...++|.+...+++.+..|..+.+..++.++...+ ..++ -.+.--+.+.+++.+..+|+++.+.++.+++
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEW-MRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREW-MRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHH-HHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 1 135788999999999999999999999999986533 3333 2344456677888888999999999999999
Q ss_pred hhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhcccc
Q 015150 252 QLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM 331 (412)
Q Consensus 252 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 331 (412)
.+|++. ++..+++.|+-.+..-|....-+++-+.+..|+- .++|.++.-+..++..+....+.++..+-+..
T Consensus 760 aiGPqd----vL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyi 831 (975)
T COG5181 760 AIGPQD----VLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYI 831 (975)
T ss_pred hcCHHH----HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHH
Confidence 999864 4445555566565666666666666666666542 36677777666677667777777766666555
Q ss_pred chh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh---hchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 332 GSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI---VDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 332 ~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~---~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
|.. .|.-.+.|.+-..+.|.++.-|+.+...+.+++-. .|.+...-.++..+..-.-++.+.|.+...++++.+.
T Consensus 832 g~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~ 911 (975)
T COG5181 832 GQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFA 911 (975)
T ss_pred HHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHH
Confidence 543 35556777777777777777777777777776533 3333333445555555556777777777777777777
Q ss_pred HhhhCC
Q 015150 407 QVMMSG 412 (412)
Q Consensus 407 ~~~~~~ 412 (412)
.++|+|
T Consensus 912 ~~lg~g 917 (975)
T COG5181 912 TVLGSG 917 (975)
T ss_pred HHhccH
Confidence 777654
No 27
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.79 E-value=2.5e-15 Score=138.52 Aligned_cols=402 Identities=15% Similarity=0.199 Sum_probs=271.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch--hhhhhhHHHHHhhc---cC
Q 015150 3 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFS---QD 77 (412)
Q Consensus 3 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~---~d 77 (412)
.||++++-+++.++...+.+.+...+-.++..+-+..+...-+.-+++++.+++..+.. .....+.|++.+++ +.
T Consensus 189 aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~ 268 (1233)
T KOG1824|consen 189 AVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEE 268 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhccccc
Confidence 68999999999999988776666656666666666666555555678999999887663 34567999999998 66
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcC----------------------------------CChHHH
Q 015150 78 KSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLR----------------------------------DNEAEV 121 (412)
Q Consensus 78 ~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~----------------------------------d~~~~v 121 (412)
.+.+.|+.++++++.+.+.++.+. ++++++..+.+.+. |-.|.|
T Consensus 269 ~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkV 348 (1233)
T KOG1824|consen 269 DDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKV 348 (1233)
T ss_pred CcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHH
Confidence 789999999999999999887654 45666666665441 113899
Q ss_pred HHHHHHHHHHHHHhhCH--HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC----------------hh---HH
Q 015150 122 RIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG----------------KD---AT 180 (412)
Q Consensus 122 r~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----------------~~---~~ 180 (412)
|.+|++++..+...-.+ ..+.+.+-|.+..-+++.++.|+.-+..++..+....+ .. ..
T Consensus 349 RRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~ 428 (1233)
T KOG1824|consen 349 RRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSM 428 (1233)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHH
Confidence 99999999887653322 13455566777777777777777766665554332110 00 00
Q ss_pred H----HhhHHHHHHhhcccChHHHHHHHHHH-------------------------------------------HHHHHh
Q 015150 181 I----EQLLPIFLSLLKDEFPDVRLNIISKL-------------------------------------------DQVNQV 213 (412)
Q Consensus 181 ~----~~l~~~l~~~l~d~~~~vr~~~~~~l-------------------------------------------~~i~~~ 213 (412)
. ..++..+.+.+++.+-..|..+...| ......
T Consensus 429 L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s 508 (1233)
T KOG1824|consen 429 LSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALIS 508 (1233)
T ss_pred HHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhc
Confidence 0 11222222222222222333333333 333222
Q ss_pred hchhhH---HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---------hhHHHHHHHHHHHHh--cCchhHHHH
Q 015150 214 IGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--KDKVYSIRD 279 (412)
Q Consensus 214 ~~~~~~---~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l--~d~~~~vr~ 279 (412)
-+++.+ .+.+.|.+.....|+.+++-..++-....+.+.+-+ ..+...+....++.| +|.+.+||+
T Consensus 509 ~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVke 588 (1233)
T KOG1824|consen 509 HPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKE 588 (1233)
T ss_pred CChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHH
Confidence 233332 233455666677888888888888888877776521 223334455555554 478899999
Q ss_pred HHHHHHHHHHHHhChhhh---hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccc---cchhHHHHhhHHHHHhhcCCCCc
Q 015150 280 AAANNVKRLAEEFGPDWA---MQHIVPQVLEMINNPHYLYRMTILQAISLLAPV---MGSEITCSQLLPVVINASKDRVP 353 (412)
Q Consensus 280 ~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~---~~~~~~~~~il~~l~~~l~d~~~ 353 (412)
.|+.+++.++..+|. +. ....+|.+.+.++ +...|.+++.++..++.. +.......+++|.+..+++-...
T Consensus 589 raIscmgq~i~~fgD-~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r 665 (1233)
T KOG1824|consen 589 RAISCMGQIIANFGD-FLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQR 665 (1233)
T ss_pred HHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999983 32 2345555555554 456899999999888642 23345677899999999988888
Q ss_pred hHHHHHHHHHHHHhhhhchH---HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 354 NIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 354 ~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
..|.+++.++..+.+.++.. ...+.++..+-.+.++.|..+-+.|...+.++..
T Consensus 666 ~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 666 ALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI 722 (1233)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 89999999999998877653 4456777788888899999999999888877654
No 28
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=1.4e-16 Score=150.07 Aligned_cols=279 Identities=17% Similarity=0.225 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc------ChhHHHHhhHHHHHHhh
Q 015150 119 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL------GKDATIEQLLPIFLSLL 192 (412)
Q Consensus 119 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~------~~~~~~~~l~~~l~~~l 192 (412)
.+.|..|++.|..++.++..+.....++|++..++.|+...||..++.++.++...+ ....+.++|+|.+..++
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~ 516 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL 516 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence 567889999999999999999999999999999999999999999999988875443 23456789999999999
Q ss_pred cc-cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHH-----HhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHH
Q 015150 193 KD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE-----LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 266 (412)
Q Consensus 193 ~d-~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~-----~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l 266 (412)
.| ....||.+-+++|+.++...- .++..-.. +.++++.. ..+.--..-+...+...+-..+
T Consensus 517 ~d~~~~~vRiayAsnla~LA~tA~------rFle~~q~~~~~g~~n~~nse-------t~~~~~~~~~~~~L~~~V~~~v 583 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYASNLAQLAKTAY------RFLELTQELRQAGMLNDPNSE-------TAPEQNYNTELQALHHTVEQMV 583 (1431)
T ss_pred ccCccceehhhHHhhHHHHHHHHH------HHHHHHHHHHhcccccCcccc-------cccccccchHHHHHHHHHHHHH
Confidence 99 677899999999999876421 11111111 23444332 0000000011122334456667
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHh
Q 015150 267 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVIN 346 (412)
Q Consensus 267 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~ 346 (412)
..++.|+.+.||++.++++..++.-+|.+.-.+.+++.+..+++|++|+.|.++.+.+..++-..|.....+.++|.+.+
T Consensus 584 ~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q 663 (1431)
T KOG1240|consen 584 SSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQ 663 (1431)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHH
Confidence 78899999999999999999999999988778889999999999999999999999999998888887778899999999
Q ss_pred hcCCCCchHHHHHHHHHHHHhhhhc-hHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150 347 ASKDRVPNIKFNVAKVLQSLIPIVD-QSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 347 ~l~d~~~~vR~~~~~~l~~l~~~~~-~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 410 (412)
.+.|+.+.|-..++.++..+.+.-- .....-+++..+..++-.|+.-||..+...+..+++.++
T Consensus 664 ~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 664 GLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred hccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999988875321 223345677777777889999999999999999888765
No 29
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.2e-15 Score=133.32 Aligned_cols=342 Identities=17% Similarity=0.145 Sum_probs=257.9
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcC-CChHHHHHHHHHHHHHHHHhhCHH---
Q 015150 68 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE--- 139 (412)
Q Consensus 68 ~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~--- 139 (412)
.+.........+...+..+...+.++........ ...-++|.+.+++. +.++.++..|..+|..++....+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 4555555555566667777777776655433321 23468899999886 777999999999999998754443
Q ss_pred HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC---hhHHHHhhHHHHHHhhcccCh-HHHHHHHHHHHHHHHhhc
Q 015150 140 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIG 215 (412)
Q Consensus 140 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~~~~~l~~i~~~~~ 215 (412)
......+|.+.+++.+++..|+..+++++++++..-. .-......++.+..++...++ .....+..+|..+++...
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 3456688999999999999999999999999985432 122234567777777776654 555667788888887753
Q ss_pred h--h-hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 015150 216 I--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 289 (412)
Q Consensus 216 ~--~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 289 (412)
+ . .-...++|.+..++.+.++.|...+++++..++...... .....++|.+..+|......|+..|++++|.++
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 2 1 224778999999999999999999999999888655332 233557899999999999999999999999977
Q ss_pred HHhCh---hhhhhhhHHHHHhhhc-CCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHH
Q 015150 290 EEFGP---DWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKV 362 (412)
Q Consensus 290 ~~~~~---~~~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~ 362 (412)
..-+. ..+....+|.+..++. ++...+|..+++.++.+....... -+...++|.+++.++......|+.|+++
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 53221 1234568888998888 666779999999999998633322 2566799999999999999999999999
Q ss_pred HHHHhhhhchHH----HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150 363 LQSLIPIVDQSV----VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409 (412)
Q Consensus 363 l~~l~~~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~ 409 (412)
++++...-.++. +...+++.+-.++.-+|.++-..+..+++.+.+..
T Consensus 388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 999976655542 33568888888888888888888888888877653
No 30
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=8.6e-15 Score=141.31 Aligned_cols=391 Identities=17% Similarity=0.187 Sum_probs=278.9
Q ss_pred CchhHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch---h-----------
Q 015150 1 MPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---D----------- 62 (412)
Q Consensus 1 ~~~vR~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~---~----------- 62 (412)
.|++|++.+-++-.+..+.++. -...+|...+..++.|+++-+...|.+.++-+..--+.. .
T Consensus 831 nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~tl~~ 910 (1702)
T KOG0915|consen 831 NPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVNTLTG 910 (1702)
T ss_pred CHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHHHHhc
Confidence 3899999999999999988732 134667778888899999888888888887665432110 0
Q ss_pred ------------------------------------------hhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCC
Q 015150 63 ------------------------------------------CVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP 99 (412)
Q Consensus 63 ------------------------------------------~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~ 99 (412)
..++++=.++++.++ ..|.-|+.++..++.++...+.
T Consensus 911 Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~ 990 (1702)
T KOG0915|consen 911 GKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGE 990 (1702)
T ss_pred cccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHH
Confidence 011233335556554 5699999999999999987764
Q ss_pred C--CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh--CHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc
Q 015150 100 E--PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL--NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL 175 (412)
Q Consensus 100 ~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 175 (412)
. .+..+++|.+.++=.||+..|+.+.......+..-- --+.+.+.|+.-+...+.+..|+||.++|-++..+.+--
T Consensus 991 kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~ 1070 (1702)
T KOG0915|consen 991 KLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGR 1070 (1702)
T ss_pred hhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCC
Confidence 4 355789999999999999999999888887765421 123566677788888889999999999999999998765
Q ss_pred ChhHHHHhhHHHH---HHhhcccChHHHHHHHHHHHHHHHh---hc-------hhhHHhhHHHHHHH-HhcCCCchHHHH
Q 015150 176 GKDATIEQLLPIF---LSLLKDEFPDVRLNIISKLDQVNQV---IG-------IDLLSQSLLPAIVE-LAEDRHWRVRLA 241 (412)
Q Consensus 176 ~~~~~~~~l~~~l---~~~l~d~~~~vr~~~~~~l~~i~~~---~~-------~~~~~~~~~~~l~~-~~~d~~~~vr~~ 241 (412)
+.+.+.+.+...+ .+..+|-.+.||.++-++...+.+. .. .......++|.+.. -.-++-..+|..
T Consensus 1071 ~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~ 1150 (1702)
T KOG0915|consen 1071 PFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRF 1150 (1702)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHH
Confidence 5555555544444 3445666788998776554444332 11 12344667777664 223677899999
Q ss_pred HHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchhHH-------------------HHHHH------HHHHHHHHHhCh
Q 015150 242 IIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSI-------------------RDAAA------NNVKRLAEEFGP 294 (412)
Q Consensus 242 ~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~v-------------------r~~a~------~~l~~l~~~~~~ 294 (412)
++..+..+++..|... +.+.++|.++...+.-.+.| |..++ +++..++.+...
T Consensus 1151 si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~ 1230 (1702)
T KOG0915|consen 1151 SIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDI 1230 (1702)
T ss_pred HHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhH
Confidence 9999999999988753 34667888777665443332 22221 123333333322
Q ss_pred hhhhhhhHHHHHhhhcCC-chHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc
Q 015150 295 DWAMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 371 (412)
Q Consensus 295 ~~~~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 371 (412)
...++++|.+.++.+.. .-..|.++...+..+...+|.+ +|..+++..++..++|.++.+|+..+.++|.++..-.
T Consensus 1231 -~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1231 -SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred -HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC
Confidence 23567888888887754 3557888999999999888887 6888999999999999999999999999999998888
Q ss_pred hHHHHhhHHHHHHhhcCCCCc
Q 015150 372 QSVVEKSIRPCLVELSEDPDV 392 (412)
Q Consensus 372 ~~~~~~~i~~~l~~l~~d~~~ 392 (412)
++.....+-..+..++.+.++
T Consensus 1310 ~dq~qKLie~~l~~~l~k~es 1330 (1702)
T KOG0915|consen 1310 PDQMQKLIETLLADLLGKDES 1330 (1702)
T ss_pred hHHHHHHHHHHHHHHhccCCC
Confidence 877766666666666555444
No 31
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.2e-14 Score=127.07 Aligned_cols=377 Identities=14% Similarity=0.137 Sum_probs=272.3
Q ss_pred HHHHHHhccCCchHHHHHHHHhHHHHhhcc--Cc--hhhhhhhHHHHHhhc-cCCChHHHHHHHHHHHHHHHHhCC---C
Q 015150 29 MSIFEELTQDDQDSVRLLAVEGCGALGKLL--EP--QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGP---E 100 (412)
Q Consensus 29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~--~~--~~~~~~l~~~l~~l~-~d~~~~vR~~~~~~l~~l~~~~~~---~ 100 (412)
.+.......++++..+..+...+..+...- ++ +....-++|.+.+.+ .+.++.++..++-+|.+|+..... .
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 344444455555556666666666665442 22 233446788777766 477899999999999999974432 2
Q ss_pred CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC---HHHHHHhhhhhHHHhccCCcH-HHHHHHHHHHHhcCcccC
Q 015150 101 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---PELAIQHILPCVKELSSDSSQ-HVRSALATVIMGMAPILG 176 (412)
Q Consensus 101 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~ 176 (412)
......+|.+..++.+++..|+..|+.+|+.++...+ .-.....+++.+..++..... ...+.+.+++.+++....
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 3446789999999999999999999999999875432 223445577777777765554 667778999999987552
Q ss_pred hh---HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh---hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHH
Q 015150 177 KD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 250 (412)
Q Consensus 177 ~~---~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~ 250 (412)
+. .....++|.+..++.+.|++|...+..++..+.....+. .+.-.+.|.+..++......++..++.+++.++
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 21 234689999999999999999999999999887553211 123456899999999999999999999999876
Q ss_pred hhhChh---hHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHH
Q 015150 251 SQLGVG---FFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQA 323 (412)
Q Consensus 251 ~~~~~~---~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~ 323 (412)
...+.+ ......+|.+..++. .+...+|+.|+.+++.+...... ..+...++|.+...+....+++|..++++
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 543322 233457888888888 56666999999999998862211 12345789999999999999999999999
Q ss_pred HHHhccccchhH----HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch------HHH-----HhhHHHHHHhhcC
Q 015150 324 ISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------SVV-----EKSIRPCLVELSE 388 (412)
Q Consensus 324 l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~------~~~-----~~~i~~~l~~l~~ 388 (412)
++.++.....+. +...+++.+..+|.-++..+-..++.++..+.+.-+. +.+ ...-+..+..+.+
T Consensus 388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~ 467 (514)
T KOG0166|consen 388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQS 467 (514)
T ss_pred HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhc
Confidence 999987666552 3445888888888766777777788888877653221 111 1234556677777
Q ss_pred CCCccHHHHHHHHHHHh
Q 015150 389 DPDVDVRFFATQALQSK 405 (412)
Q Consensus 389 d~~~~vr~~a~~al~~~ 405 (412)
..+.++...|.+.+++.
T Consensus 468 hen~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 468 HENEEIYKKAYKIIDTY 484 (514)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 77778887777766654
No 32
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.73 E-value=1.8e-13 Score=120.14 Aligned_cols=409 Identities=15% Similarity=0.132 Sum_probs=268.1
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchH-HHHHHHHhHHHHhhccCchhhhh---h-hHHHHHh-hc
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDS-VRLLAVEGCGALGKLLEPQDCVA---H-ILPVIVN-FS 75 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~-~r~~a~~~l~~i~~~~~~~~~~~---~-l~~~l~~-l~ 75 (412)
|..-..|++.++.++..--+...|+.++........+++|. .+..++.+++.++....|+.... . +..++.. +-
T Consensus 108 pr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k 187 (858)
T COG5215 108 PRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALK 187 (858)
T ss_pred cHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcc
Confidence 44556788888888886656677899998888888888764 67888999999999988854332 2 3334433 34
Q ss_pred cCCChHHHHHHHHHHHH-HHH---HhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC--------------
Q 015150 76 QDKSWRVRYMVANQLYE-LCE---AVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-------------- 137 (412)
Q Consensus 76 ~d~~~~vR~~~~~~l~~-l~~---~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-------------- 137 (412)
+.++..||.+++++|.. +.. .+..+...++++....+..+.++.++..+++-|+.++....-
T Consensus 188 ~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~al 267 (858)
T COG5215 188 NETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAAL 267 (858)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999876 322 222333344555555555555556666665555554422100
Q ss_pred -------------------------HH----------------------HHHHhhhhhHHHhcc-------CCcHHHHHH
Q 015150 138 -------------------------PE----------------------LAIQHILPCVKELSS-------DSSQHVRSA 163 (412)
Q Consensus 138 -------------------------~~----------------------~~~~~~~~~l~~~~~-------d~~~~vr~~ 163 (412)
++ .....++|.+++++. +.+|.+..+
T Consensus 268 t~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sma 347 (858)
T COG5215 268 TGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMA 347 (858)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhh
Confidence 00 012336777777763 357888888
Q ss_pred HHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh---hHHhhHHHHHHHHhcCCCchHHH
Q 015150 164 LATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRL 240 (412)
Q Consensus 164 ~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~ 240 (412)
+..|+.-+++..|+.. .+..+.++.+-+..+++.-|.++.-+++++...-..+ .+.+..+|.+.....|+.-.++.
T Consensus 348 A~sCLqlfaq~~gd~i-~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ 426 (858)
T COG5215 348 ASSCLQLFAQLKGDKI-MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKS 426 (858)
T ss_pred HHHHHHHHHHHhhhHh-HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhh
Confidence 8888887777766553 3345666677788888999999999999987654332 34567788888888888888888
Q ss_pred HHHHHhhHHHhhhCh---------------------------------hh------------------HHHHHHHHHHHH
Q 015150 241 AIIEYIPLLASQLGV---------------------------------GF------------------FDDKLGALCMQW 269 (412)
Q Consensus 241 ~~~~~l~~l~~~~~~---------------------------------~~------------------~~~~l~~~l~~~ 269 (412)
..+++++.++..... .. ++..++..+++.
T Consensus 427 ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~ 506 (858)
T COG5215 427 TTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKG 506 (858)
T ss_pred HHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHH
Confidence 888888887754310 00 011111112111
Q ss_pred --hcCchhHHHHHHHHHHHHHHHHhChh----------h-----------------------------------------
Q 015150 270 --LKDKVYSIRDAAANNVKRLAEEFGPD----------W----------------------------------------- 296 (412)
Q Consensus 270 --l~d~~~~vr~~a~~~l~~l~~~~~~~----------~----------------------------------------- 296 (412)
+.+.+...|.++..+|+.++...+.. +
T Consensus 507 t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~ 586 (858)
T COG5215 507 TELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRT 586 (858)
T ss_pred HHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23556778999999988887643210 0
Q ss_pred -------hhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150 297 -------AMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 366 (412)
Q Consensus 297 -------~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 366 (412)
..+.++..+.+.+...+ ..+-.-...+++.++..++.. .|.+++.|.+.+.++..+..|-..+...++.+
T Consensus 587 ~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdl 666 (858)
T COG5215 587 RRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDL 666 (858)
T ss_pred cCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 01123333344443332 233444566677777766654 47888999999999888888889999999999
Q ss_pred hhhhchH--HHHhhHHHHHHhhcCC--CCccHHHHHHHHHHHhHHhhhC
Q 015150 367 IPIVDQS--VVEKSIRPCLVELSED--PDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 367 ~~~~~~~--~~~~~i~~~l~~l~~d--~~~~vr~~a~~al~~~~~~~~~ 411 (412)
+..++.+ .+...+...|.+.++. .+.+++-...+.++.|+-.+|.
T Consensus 667 antl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga 715 (858)
T COG5215 667 ANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGA 715 (858)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhh
Confidence 9988876 3556677777775444 4557888889999998887774
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=99.72 E-value=3.6e-13 Score=127.74 Aligned_cols=307 Identities=15% Similarity=0.138 Sum_probs=193.4
Q ss_pred HHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchH
Q 015150 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV 107 (412)
Q Consensus 28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 107 (412)
.++.+.+-++|+++.+|..|++.++.+.. ......+.+.+.+.+.|+++-||+.|+-++.++....++......++
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~----~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~ 181 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV----SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFK 181 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchH
Confidence 45667777889999999999888876553 33667788888999999999999999999999877555433345678
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH-HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHH
Q 015150 108 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP 186 (412)
Q Consensus 108 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 186 (412)
+.+.+++.|.++.|...|+.+|..+.+..+.. ......+..+...+.+-+++-+..+.+.+...... .+.....++.
T Consensus 182 ~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~--~~~e~~~il~ 259 (746)
T PTZ00429 182 KDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS--DKESAETLLT 259 (746)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC--CcHHHHHHHH
Confidence 88889999999999999999999887654322 11122233334444555666667777776553321 1112345666
Q ss_pred HHHHhhcccChHHHHHHHHHHHHHHHhhchhhH---HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHH
Q 015150 187 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 263 (412)
Q Consensus 187 ~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~---~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 263 (412)
.+...++..++.|...+++.+-.+.....++.. ...+-+.+..+ .+.++.+|..++..+..+.... +..+..+ .
T Consensus 260 ~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~~-~ 336 (746)
T PTZ00429 260 RVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRTN-L 336 (746)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHHH-H
Confidence 677777777888888888887777654432222 11222334444 4566788888888877776644 2233332 3
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHH
Q 015150 264 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPV 343 (412)
Q Consensus 264 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~ 343 (412)
..+....+|+.. ||...+..|..++..-. .+.++..|.++..+.+...+..++.+++.++..++. ..+.++..
T Consensus 337 ~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~N----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~ 409 (746)
T PTZ00429 337 DSFYVRYSDPPF-VKLEKLRLLLKLVTPSV----APEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANL 409 (746)
T ss_pred HhhhcccCCcHH-HHHHHHHHHHHHcCccc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHH
Confidence 344444556553 66666666655543211 234556666666666666667777777776654432 23444444
Q ss_pred HHhhcCC
Q 015150 344 VINASKD 350 (412)
Q Consensus 344 l~~~l~d 350 (412)
+++++++
T Consensus 410 Ll~ll~~ 416 (746)
T PTZ00429 410 LLQIVDR 416 (746)
T ss_pred HHHHhcC
Confidence 4444443
No 34
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.71 E-value=8.2e-13 Score=116.10 Aligned_cols=366 Identities=14% Similarity=0.126 Sum_probs=260.6
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCC-chHHHHHHHHhHHHHhhccCc--------------hhhhhh
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEP--------------QDCVAH 66 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~i~~~~~~--------------~~~~~~ 66 (412)
|.+|.++-..|.++.+ ..+.+.+-=+.+.+++++ ++..|..|.-+|.+-...-.+ .+.++.
T Consensus 19 ~n~rl~aE~ql~~l~~----~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~q 94 (858)
T COG5215 19 PNARLRAEAQLLELQS----GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQ 94 (858)
T ss_pred CCccccHHHHHHHhcc----ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHH
Confidence 6677777777766654 223332222233344433 466788777666544322211 124556
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChH-HHHHHHHHHHHHHHHhhCHHHHHH--
Q 015150 67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEA-EVRIAAAGKVTKICRILNPELAIQ-- 143 (412)
Q Consensus 67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~-- 143 (412)
+-...++.+..+.++.-..+++.++.|++.--+...++.++..+.....|+.+ .++..++..++..++...|+...+
T Consensus 95 vK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~s 174 (858)
T COG5215 95 VKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMS 174 (858)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHh
Confidence 77778888899999999999999999998766777788888888888887765 578888899999998887753322
Q ss_pred -hh-hhhHHHhc-cCCcHHHHHHHHHHHHhcC----cccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch
Q 015150 144 -HI-LPCVKELS-SDSSQHVRSALATVIMGMA----PILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 216 (412)
Q Consensus 144 -~~-~~~l~~~~-~d~~~~vr~~~~~~l~~l~----~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~ 216 (412)
.+ +....... +.++..||-++..++..-. ..+..+.-.+.++...++.-+.++.+++.++..++.++....-.
T Consensus 175 N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~ 254 (858)
T COG5215 175 NVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYK 254 (858)
T ss_pred hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 22 23333333 4578899999999887622 22333344456777777777788999999999999998755321
Q ss_pred --hhH-HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh-Ch------------h---h---HHHHHHHHHHHHhc---
Q 015150 217 --DLL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GV------------G---F---FDDKLGALCMQWLK--- 271 (412)
Q Consensus 217 --~~~-~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~------------~---~---~~~~l~~~l~~~l~--- 271 (412)
..+ .+.+.....+.+++++.+|...+++.++.+++-- .. + + ....++|.++++|.
T Consensus 255 fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ 334 (858)
T COG5215 255 FMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQG 334 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcC
Confidence 111 2233344456789999999999999887765421 00 0 0 12447888898874
Q ss_pred ----CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHH
Q 015150 272 ----DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVV 344 (412)
Q Consensus 272 ----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l 344 (412)
+++|.+-.+|..+|.-+.+..|... ...++..+.+.+..++|.-|++++-++|.+.+.-... ++....+|.+
T Consensus 335 ed~~~DdWn~smaA~sCLqlfaq~~gd~i-~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i 413 (858)
T COG5215 335 EDYYGDDWNPSMAASSCLQLFAQLKGDKI-MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGI 413 (858)
T ss_pred CCccccccchhhhHHHHHHHHHHHhhhHh-HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHH
Confidence 4678899999999999999887764 4447788888999999999999999999998654433 5778889999
Q ss_pred HhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150 345 INASKDRVPNIKFNVAKVLQSLIPIVDQ 372 (412)
Q Consensus 345 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 372 (412)
.+...|+.-.|+..++++++.++..+..
T Consensus 414 ~n~m~D~~l~vk~ttAwc~g~iad~va~ 441 (858)
T COG5215 414 ENEMSDSCLWVKSTTAWCFGAIADHVAM 441 (858)
T ss_pred HHhcccceeehhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876543
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.70 E-value=3.7e-13 Score=127.66 Aligned_cols=345 Identities=13% Similarity=0.096 Sum_probs=231.6
Q ss_pred HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccch
Q 015150 27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV 106 (412)
Q Consensus 27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l 106 (412)
.+.+-+.++..+++..+|+.....+...++..++ ..-...+.+.+-++|+++.+|..+++.++.+.. ....+.+
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pe--lalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~----~~i~e~l 141 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPE--KALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV----SSVLEYT 141 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc----HHHHHHH
Confidence 3455555567777888888777776666544322 223456777888889999999999998887653 1233567
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhH-HHHhhH
Q 015150 107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA-TIEQLL 185 (412)
Q Consensus 107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~ 185 (412)
.+.+.+++.|+++.||+.|+-++.++....++......+++.+.+++.|+++.|...++.++..+.+..+... .....+
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~ 221 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWV 221 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 7778888999999999999999998876544332233467778888899999999999998888865433211 112223
Q ss_pred HHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHH---HHH
Q 015150 186 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKL 262 (412)
Q Consensus 186 ~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l 262 (412)
..+...+.+-++.-+...+..|...... .+.....++..+...+.+.++.|-.++++++-.+.....++... ..+
T Consensus 222 ~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~--~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl 299 (746)
T PTZ00429 222 NRLVYHLPECNEWGQLYILELLAAQRPS--DKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRV 299 (746)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3344445555666666666666442211 11223467777778888899999999999887776544332222 224
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHH
Q 015150 263 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLP 342 (412)
Q Consensus 263 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~ 342 (412)
.+.++.+ ...++++|..++.++..+.... +..+.. -+..+.-.++|+.+ +|...++.+..++..-. ...++.
T Consensus 300 ~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~-~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~N----v~~IL~ 371 (746)
T PTZ00429 300 NTALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRT-NLDSFYVRYSDPPF-VKLEKLRLLLKLVTPSV----APEILK 371 (746)
T ss_pred HHHHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHH-HHHhhhcccCCcHH-HHHHHHHHHHHHcCccc----HHHHHH
Confidence 4555555 4567899999999998888754 343333 35556666788876 89999999999875433 345677
Q ss_pred HHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCC
Q 015150 343 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSED 389 (412)
Q Consensus 343 ~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d 389 (412)
.+.++..|.+...+..++++++.++..+.. ..+.++..|..++++
T Consensus 372 EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~ 416 (746)
T PTZ00429 372 ELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQIVDR 416 (746)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHhcC
Confidence 778888899999999999999999876543 223444444444433
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.66 E-value=2.2e-12 Score=119.38 Aligned_cols=377 Identities=16% Similarity=0.168 Sum_probs=257.1
Q ss_pred HHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC---CCcccch
Q 015150 30 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDV 106 (412)
Q Consensus 30 ~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l 106 (412)
+.+...+++.+.+.-..++.+|..+.....+....+.+.+.+...+.++++.||..+++.++.++..... -.....+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l 120 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNEL 120 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence 3355566666666667888999999998888777888999999999999999999999999888754321 1234679
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh---hHHH
Q 015150 107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATI 181 (412)
Q Consensus 107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~ 181 (412)
++.+..++.|++..|.+.|+.+|..++++-..- .+.+...+.+..++...+..+|..+.+.+..++..-.. ....
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~ 200 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN 200 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 999999999999999999999999998753222 22333477788888777888999899988888754322 1122
Q ss_pred HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch-hh-HHhhHHHHHHHHhcCC--CchHH----HHHHHHhhHHHhhh
Q 015150 182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-DL-LSQSLLPAIVELAEDR--HWRVR----LAIIEYIPLLASQL 253 (412)
Q Consensus 182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~-~~-~~~~~~~~l~~~~~d~--~~~vr----~~~~~~l~~l~~~~ 253 (412)
..+++.+...++++|.-+|.+++..+..++..-.. .. ....+++.+..++.+. +++.+ .+.+..++.++..-
T Consensus 201 sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~ 280 (503)
T PF10508_consen 201 SGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS 280 (503)
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC
Confidence 45888999999998899999999999999873221 11 1234666666665443 23111 12334555555542
Q ss_pred Chhh--HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh-hhh-------hhhhHHHHHhhhcCCchHHHHHHHHH
Q 015150 254 GVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-DWA-------MQHIVPQVLEMINNPHYLYRMTILQA 323 (412)
Q Consensus 254 ~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~-------~~~~l~~l~~~~~~~~~~~r~~~~~~ 323 (412)
+... ..+.++..+..++.+.+...+..|+.++|.+...... ..+ .+.++..+..........+|..++++
T Consensus 281 ~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~a 360 (503)
T PF10508_consen 281 PQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHA 360 (503)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 2221 2355666667778889999999999999988754422 222 12344455555556667899999999
Q ss_pred HHHhccccch---h--------HH---HHhhHH-HHHhhcCCCCchHHHHHHHHHHHHhhh-hchHH--HHhhHHHHHHh
Q 015150 324 ISLLAPVMGS---E--------IT---CSQLLP-VVINASKDRVPNIKFNVAKVLQSLIPI-VDQSV--VEKSIRPCLVE 385 (412)
Q Consensus 324 l~~l~~~~~~---~--------~~---~~~il~-~l~~~l~d~~~~vR~~~~~~l~~l~~~-~~~~~--~~~~i~~~l~~ 385 (412)
++.+...... + .| ...-.. .+...++.|.|++|.++.+.+..++.. .|... ..+.+++.+..
T Consensus 361 l~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 361 LASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 9999543332 1 01 111122 677888999999999999999988754 22222 22456666655
Q ss_pred hcCCCCccHHHHHHHHHHHhH
Q 015150 386 LSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 386 l~~d~~~~vr~~a~~al~~~~ 406 (412)
-..+++++.+..=-..+..+.
T Consensus 441 r~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 441 RSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 566677666555555544444
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.60 E-value=2e-11 Score=113.15 Aligned_cols=358 Identities=13% Similarity=0.149 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccCCChHH
Q 015150 6 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRV 82 (412)
Q Consensus 6 ~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d~~~~v 82 (412)
..++..|..+..........+.+.+.+...+.++++.+|..++..++.++..... -.....+++.+..++.|++..|
T Consensus 56 ~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~V 135 (503)
T PF10508_consen 56 ELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSV 135 (503)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHH
Confidence 3455667777666666666788889999999999999999999999988865422 1133569999999999999999
Q ss_pred HHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhccCCc
Q 015150 83 RYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSS 157 (412)
Q Consensus 83 R~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~ 157 (412)
...+++.|..++..-.. ..+...+.+.+..++..++..+|..+.+.+..+++.-+.. .....+++.+...+.+++
T Consensus 136 a~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dD 215 (503)
T PF10508_consen 136 AKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDD 215 (503)
T ss_pred HHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCcc
Confidence 99999999999864221 1223445788888888878899999999999887654332 223348888888888899
Q ss_pred HHHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHhhcccChHHHH------HHHHHHHHHHHhhchhhH---HhhHHHH
Q 015150 158 QHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRL------NIISKLDQVNQVIGIDLL---SQSLLPA 226 (412)
Q Consensus 158 ~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~------~~~~~l~~i~~~~~~~~~---~~~~~~~ 226 (412)
.-++..+++.+..++..-..-. ....+++.+.+++.+.+.+-|. +.++.++.+... ++..+ .+.++..
T Consensus 216 iLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~ 294 (503)
T PF10508_consen 216 ILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLER 294 (503)
T ss_pred HHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHH
Confidence 9999999999999987332211 1245777788877654222122 223445555543 33222 2455666
Q ss_pred HHHHhcCCCchHHHHHHHHhhHHHhhh-ChhhH-------HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh----
Q 015150 227 IVELAEDRHWRVRLAIIEYIPLLASQL-GVGFF-------DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---- 294 (412)
Q Consensus 227 l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~~-------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---- 294 (412)
+..+.++.++..+..++.+++.++... |...+ ...++..+.........++|..++.+++.+......
T Consensus 295 l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~ 374 (503)
T PF10508_consen 295 LFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDN 374 (503)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchH
Confidence 677788899999999999999998655 33322 133455555556677788999999999999754332
Q ss_pred -------hhh---hhhhHH-HHHhhhcCCchHHHHHHHHHHHHhccccchh-H--HHHhhHHHHHhhcCCCCchH---HH
Q 015150 295 -------DWA---MQHIVP-QVLEMINNPHYLYRMTILQAISLLAPVMGSE-I--TCSQLLPVVINASKDRVPNI---KF 357 (412)
Q Consensus 295 -------~~~---~~~~l~-~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~--~~~~il~~l~~~l~d~~~~v---R~ 357 (412)
.|+ .+.-.. .++.+++.|-+.+|.++...+..++..-..- . -.+.++..++..-.++++.. |.
T Consensus 375 ~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~ 454 (503)
T PF10508_consen 375 DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKY 454 (503)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHH
Confidence 111 111112 6777888898999999999999998643221 1 13345555555445555444 44
Q ss_pred HHHHHHH
Q 015150 358 NVAKVLQ 364 (412)
Q Consensus 358 ~~~~~l~ 364 (412)
.++++|.
T Consensus 455 ~ii~~l~ 461 (503)
T PF10508_consen 455 DIIKALA 461 (503)
T ss_pred HHHHHHH
Confidence 4555555
No 38
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=9.6e-12 Score=120.84 Aligned_cols=400 Identities=19% Similarity=0.234 Sum_probs=265.0
Q ss_pred hHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhccCCC
Q 015150 4 VRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKS 79 (412)
Q Consensus 4 vR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~d~~ 79 (412)
-|+.|+-.|+.+++..++ +.+...++|-+.++-=|++..++.+...+...+...-.. +.+.++|+.-++..+.+..
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ke 1052 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKE 1052 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchh
Confidence 366778888888887654 345666888888888899999998877777766654222 5567788888888889999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcc---cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC----------HHHHHHhhh
Q 015150 80 WRVRYMVANQLYELCEAVGPEPTR---SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----------PELAIQHIL 146 (412)
Q Consensus 80 ~~vR~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------~~~~~~~~~ 146 (412)
|+||.++|-+|..+.+.-+.+... ++++..+++..+|-.+.||.+|-.+...+++.+- ...+...++
T Consensus 1053 wRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iL 1132 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIIL 1132 (1702)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHH
Confidence 999999999999999875544432 3567777788899999999998777766665431 235667788
Q ss_pred hhHHH-hccCCcHHHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHhhcccChH-------------------HHHHHH
Q 015150 147 PCVKE-LSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPD-------------------VRLNII 204 (412)
Q Consensus 147 ~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~-------------------vr~~~~ 204 (412)
|++.. .+-+.-++||..+...+..+++.-|+.. ....|+|.+.+....-++. .|..++
T Consensus 1133 PfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~a 1212 (1702)
T KOG0915|consen 1133 PFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAA 1212 (1702)
T ss_pred HHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhh
Confidence 98875 2336788999999999999998877743 2356777777665443332 333333
Q ss_pred H------HHHHHHHhhchhhHHhhHHHHHHHHhcCC-CchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchh
Q 015150 205 S------KLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVY 275 (412)
Q Consensus 205 ~------~l~~i~~~~~~~~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~ 275 (412)
+ .++...++++... ...++|.+.+++... .-..|.+++..+..++..+|.+. +...++..++..++|.+.
T Consensus 1213 ksspmmeTi~~ci~~iD~~v-Leelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNe 1291 (1702)
T KOG0915|consen 1213 KSSPMMETINKCINYIDISV-LEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNE 1291 (1702)
T ss_pred cCCcHHHHHHHHHHhhhHHH-HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccH
Confidence 2 2233333333333 367888888877654 45678888888888888887654 456788889999999999
Q ss_pred HHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch--hHHHHhhHHHHHhhcCCC--
Q 015150 276 SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDR-- 351 (412)
Q Consensus 276 ~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~-- 351 (412)
.+|.+-..+++.+++.-.++...+-+-..+..++.+.+. .+..++..+..++..... +.+...++|..+-...+.
T Consensus 1292 sv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es-~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~K 1370 (1702)
T KOG0915|consen 1292 SVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES-LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEK 1370 (1702)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHH
Confidence 999999999999998766654444333334445554332 113333333333322211 135677888776555443
Q ss_pred -CchHHHHHHHHHHHHhhh-hchH--HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150 352 -VPNIKFNVAKVLQSLIPI-VDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 352 -~~~vR~~~~~~l~~l~~~-~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 408 (412)
+.+.+...+ ..+.+. .|.- ...+.+.+......++..+.+|..++.++..++.-
T Consensus 1371 a~q~Lw~dvW---~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~ 1428 (1702)
T KOG0915|consen 1371 ANQELWNDVW---AELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEG 1428 (1702)
T ss_pred HHHHHHHHHH---HHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccc
Confidence 111222221 111111 1111 23345566666677888899999999998877653
No 39
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2.2e-12 Score=107.51 Aligned_cols=380 Identities=17% Similarity=0.165 Sum_probs=254.6
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhh---hhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC-
Q 015150 26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV---AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP- 101 (412)
Q Consensus 26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~---~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~- 101 (412)
.+...-+..++++.++.+..++...+++++-........ .-+-+++.+...| ...+|..++.++.+++..-....
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~k 162 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVK 162 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhh
Confidence 334444556678888889999999999888765442221 2244566666655 56688888999998886522111
Q ss_pred -cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh
Q 015150 102 -TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD 178 (412)
Q Consensus 102 -~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 178 (412)
...--+..+.++-+.++..||..+..+|..+....... .....-+|++.++++..+..||..++.+++.++-.-...
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R 242 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR 242 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence 11223455666888999999999999998886644332 333457899999999999999999999999987432111
Q ss_pred H--HH--HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc--hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhh
Q 015150 179 A--TI--EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 252 (412)
Q Consensus 179 ~--~~--~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~--~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 252 (412)
. .. ..++|.+.+++.|.++.++-.+..+|..+..... .+.....-+|.+.+++.++.-..-.+.+.++..++-.
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 1 11 3589999999999999999999989888865422 2333345689999999887766655566666555544
Q ss_pred hChhhH--HHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHH
Q 015150 253 LGVGFF--DDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISL 326 (412)
Q Consensus 253 ~~~~~~--~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~ 326 (412)
-+.+.. ...++..+..+|.- ++.+++-.|..+|..++..... .++-...+|.+.+++.|..-.+|...--++..
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence 433322 22234445566654 4556999999999888763321 22234578999999999876666554445554
Q ss_pred h--ccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH--------HHhhHHHHHHhhcCCCCccHHH
Q 015150 327 L--APVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV--------VEKSIRPCLVELSEDPDVDVRF 396 (412)
Q Consensus 327 l--~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~--------~~~~i~~~l~~l~~d~~~~vr~ 396 (412)
+ .+..........++|.++.+..+.+.+||-.++.+|..++...+... -.+.|--.|...+...+..+|.
T Consensus 403 Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~h 482 (550)
T KOG4224|consen 403 LALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRH 482 (550)
T ss_pred HHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHH
Confidence 4 44333334455799999999999999999999999999987654310 0133444455555555566666
Q ss_pred HHHHHHHHhH
Q 015150 397 FATQALQSKD 406 (412)
Q Consensus 397 ~a~~al~~~~ 406 (412)
.+...+..+.
T Consensus 483 ia~wTI~qLl 492 (550)
T KOG4224|consen 483 IARWTIQQLL 492 (550)
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 40
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=4.9e-13 Score=111.32 Aligned_cols=342 Identities=15% Similarity=0.136 Sum_probs=244.6
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccch---HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHH--
Q 015150 67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV---VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-- 141 (412)
Q Consensus 67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l---~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-- 141 (412)
....++.+++++++.+..++..++|+++-..+.......+ =+.+.++..|. .+||..++.|+..++..-.....
T Consensus 86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~kiA 164 (550)
T KOG4224|consen 86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVKIA 164 (550)
T ss_pred hhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhhhh
Confidence 4445667788889999999999999998777665544433 33666777664 57899999999998876333321
Q ss_pred HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh--hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh--
Q 015150 142 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-- 217 (412)
Q Consensus 142 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~-- 217 (412)
....+..+.++.+.++..||..+..++..+...-.. ..+...-+|.+.++++..+..+|..+..+++.++-.--..
T Consensus 165 ~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred hccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 222444555588888999999999988887654321 2223456799999999999999999999998885321111
Q ss_pred --hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh--hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC
Q 015150 218 --LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 293 (412)
Q Consensus 218 --~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 293 (412)
...+.++|.+.+++.|++++++..+..++..++..... +.....-+|.+.++++++.-..-.+...++..+.-.-+
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL 324 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence 11356899999999999999999999999888765422 22334457899999998877666656666655443322
Q ss_pred hhhh--hhhhHHHHHhhhcCC-chHHHHHHHHHHHHhccccch---hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150 294 PDWA--MQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 367 (412)
Q Consensus 294 ~~~~--~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 367 (412)
++.. ...++..+..++.-. +..++..++..+..++..... ..+....+|.+..++.|...+||.....++..++
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 2211 123555566666543 466888999999988753332 2456678999999999999999988888888776
Q ss_pred hhhc--hHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150 368 PIVD--QSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409 (412)
Q Consensus 368 ~~~~--~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~ 409 (412)
..=. .......|+|.|.....|.+.+||-+++.|+..+..-.
T Consensus 405 l~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 405 LNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred hccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 4322 22345679999999999999999999999999987644
No 41
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=2.5e-10 Score=104.35 Aligned_cols=169 Identities=21% Similarity=0.238 Sum_probs=118.9
Q ss_pred HHHhccCCchHHHHHH-HHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 015150 32 FEELTQDDQDSVRLLA-VEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAY 110 (412)
Q Consensus 32 l~~l~~~~~~~~r~~a-~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l 110 (412)
+..+++++.+..+..| -++++.+++.. ..+.++|.+.+.....+.+||+..--.|-..++.-++.... =+..+
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~----dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--SIntf 113 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGK----DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--SINTF 113 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--eHHHH
Confidence 4445777766554444 45666666543 36678888888888888999988777777777643222211 16778
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHH
Q 015150 111 VRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLS 190 (412)
Q Consensus 111 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ 190 (412)
.+.++|+++.+|..|+..+..+-- ..+...++-.+.++..|.++.||..++.++..+-. ++++... +|+..+..
T Consensus 114 Qk~L~DpN~LiRasALRvlSsIRv----p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~-qL~e~I~~ 187 (968)
T KOG1060|consen 114 QKALKDPNQLIRASALRVLSSIRV----PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKD-QLEEVIKK 187 (968)
T ss_pred HhhhcCCcHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHH-HHHHHHHH
Confidence 889999999999999988876422 11223344555677889999999999999988864 3444333 88888999
Q ss_pred hhcccChHHHHHHHHHHHHHHH
Q 015150 191 LLKDEFPDVRLNIISKLDQVNQ 212 (412)
Q Consensus 191 ~l~d~~~~vr~~~~~~l~~i~~ 212 (412)
++.|.++-|-..|+-++..++.
T Consensus 188 LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 188 LLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred HhcCCCCcchhHHHHHHHHhch
Confidence 9999988888888887777653
No 42
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=6.7e-11 Score=108.00 Aligned_cols=352 Identities=17% Similarity=0.163 Sum_probs=229.5
Q ss_pred HHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHH
Q 015150 29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVP 108 (412)
Q Consensus 29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~ 108 (412)
++.+++-+.|+|+.+|..|++.+..+--.. ..+.++-.+.++..|+++.||+.++.++.++-. ++.+.. .++..
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIRvp~----IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k-~qL~e 183 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIRVPM----IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQK-DQLEE 183 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcchhh----HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhH-HHHHH
Confidence 356778899999999999998887775433 455677778889999999999999999999875 344433 48889
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHhh---------------CH-HHH-------------------------------
Q 015150 109 AYVRLLRDNEAEVRIAAAGKVTKICRIL---------------NP-ELA------------------------------- 141 (412)
Q Consensus 109 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~---------------~~-~~~------------------------------- 141 (412)
.+..++.|.++.|-.+|+-++..++..- .+ ++|
T Consensus 184 ~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~ 263 (968)
T KOG1060|consen 184 VIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNG 263 (968)
T ss_pred HHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCc
Confidence 9999999999888888877776554310 00 001
Q ss_pred ---------------------HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHH
Q 015150 142 ---------------------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVR 200 (412)
Q Consensus 142 ---------------------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 200 (412)
...++.....++...++.|-.++++.+..++... ....++..+..++.. ++++|
T Consensus 264 ~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs-~~~vq 338 (968)
T KOG1060|consen 264 RSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRS-NREVQ 338 (968)
T ss_pred ccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhc-CCcch
Confidence 0112223334556677777778888887777532 223455556666654 46677
Q ss_pred HHHHHHHHHHHHhhc----------------hh----------------hHHhhHHHHHHHHhcCCCchHHHHHHHHhhH
Q 015150 201 LNIISKLDQVNQVIG----------------ID----------------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 248 (412)
Q Consensus 201 ~~~~~~l~~i~~~~~----------------~~----------------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~ 248 (412)
...++++..+...-. +. .-...+++-+..+.++.+-++-.+++++++.
T Consensus 339 yvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGr 418 (968)
T KOG1060|consen 339 YVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGR 418 (968)
T ss_pred hhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 777777766643210 00 0013445556666777766777777888888
Q ss_pred HHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHh
Q 015150 249 LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLL 327 (412)
Q Consensus 249 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l 327 (412)
.+...+. +.++.+.-++.+++..+..|..++...+..+++.-..+ ...++-.+.+++..-. +.-|.+.++.+|..
T Consensus 419 CA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~--h~~ii~~La~lldti~vp~ARA~IiWLige~ 494 (968)
T KOG1060|consen 419 CASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE--HLEILFQLARLLDTILVPAARAGIIWLIGEY 494 (968)
T ss_pred HHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH--HHHHHHHHHHHhhhhhhhhhhceeeeeehhh
Confidence 8777654 34667777788888888888888888888888754333 2235555555553322 55677777877777
Q ss_pred ccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHh-hcCCCCccHHHHHH
Q 015150 328 APVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFAT 399 (412)
Q Consensus 328 ~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~-l~~d~~~~vr~~a~ 399 (412)
++... .+.+.++..+.+.+.|..+.||..++..-.++...-..+ ...+...+.. .--|+.-++|..+.
T Consensus 495 ~e~vp--ri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~--~kll~~Yv~~L~~yD~sYDiRDRaR 563 (968)
T KOG1060|consen 495 CEIVP--RIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ--TKLLVQYVFELARYDLSYDIRDRAR 563 (968)
T ss_pred hhhcc--hhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh--HHHHHHHHHHHhccCCCcchhHHHH
Confidence 65433 245667777788889999999999998887775432221 1222232323 23577777776654
No 43
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.47 E-value=5.4e-11 Score=105.77 Aligned_cols=278 Identities=23% Similarity=0.271 Sum_probs=204.8
Q ss_pred hhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 015150 66 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI 145 (412)
Q Consensus 66 ~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 145 (412)
...+.+.+.+.|+++.+|..++..++.+.. ...+|.+...+.|+++.||..+..+++.+.. ...
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence 467778888888899999999999877664 5788999999999999999999998887643 234
Q ss_pred hhhHHHhcc-CCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccC------------hHHHHHHHHHHHHHHH
Q 015150 146 LPCVKELSS-DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQ 212 (412)
Q Consensus 146 ~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~~~~~l~~i~~ 212 (412)
+|.+.++++ |.++.||..++.+++.+... .-++.+...++|+. ..+|..++..++.+..
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 566666665 89999999999999988742 22344445555533 2577777777776653
Q ss_pred hhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 015150 213 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 292 (412)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 292 (412)
+...+.+...+.+.+..+|..++..++.+.... ..+.+.+...+.|+++.+|..++..++..-.
T Consensus 179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-- 242 (335)
T COG1413 179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD-- 242 (335)
T ss_pred --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence 346677888888999999999999888776543 3466788888999999999999988876442
Q ss_pred ChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150 293 GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 372 (412)
Q Consensus 293 ~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 372 (412)
....+.+...+.+.++.++.......+.. ......+.+...+.|....+|......++.+..
T Consensus 243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~---- 304 (335)
T COG1413 243 ------EEAVDALAKALEDEDVILALLAAAALGAL--------DLAEAALPLLLLLIDEANAVRLEAALALGQIGQ---- 304 (335)
T ss_pred ------chhHHHHHHHHhccchHHHHHHHHHhccc--------CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcc----
Confidence 34556777777888887777666666521 122334556666788888999999999988875
Q ss_pred HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHh
Q 015150 373 SVVEKSIRPCLVELSEDPDVDVRFFATQALQSK 405 (412)
Q Consensus 373 ~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~ 405 (412)
............+.+..+|..+......+
T Consensus 305 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
T COG1413 305 ----EKAVAALLLALEDGDADVRKAALILLEGI 333 (335)
T ss_pred ----cchHHHHHHHhcCCchhhHHHHHHHHHhh
Confidence 34455555666777788888777766543
No 44
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.44 E-value=1.5e-10 Score=102.94 Aligned_cols=277 Identities=23% Similarity=0.262 Sum_probs=206.7
Q ss_pred HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccch
Q 015150 27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV 106 (412)
Q Consensus 27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l 106 (412)
...+.+.+.+.+++..+|..+...++.+. ....+|.+...+.|.++.+|..++.+|+.+.. ...
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence 35666777788888899999888865554 34688899999999999999999998887663 556
Q ss_pred HHHHHHhcC-CChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCc------------HHHHHHHHHHHHhcCc
Q 015150 107 VPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS------------QHVRSALATVIMGMAP 173 (412)
Q Consensus 107 ~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~------------~~vr~~~~~~l~~l~~ 173 (412)
++.+..+++ |++..||..+..+|+.+...- .+..+...++|.. +.+|..+...++.+..
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 777777777 899999999999999876521 2334444444433 4789999988888763
Q ss_pred ccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh
Q 015150 174 ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 253 (412)
Q Consensus 174 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 253 (412)
....+.+...+.|.+..||..++.+++.+.... ..+.+.+.....+.+|.+|..++..++.+..
T Consensus 179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-- 242 (335)
T COG1413 179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD-- 242 (335)
T ss_pred --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence 356688888999999999999999999997652 3567888899999999999999988865543
Q ss_pred ChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch
Q 015150 254 GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS 333 (412)
Q Consensus 254 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 333 (412)
....+.+...+.+.++.++..+...++. . -.....+.+...+.|..+.+|..+...++......
T Consensus 243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~----~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-- 306 (335)
T COG1413 243 ------EEAVDALAKALEDEDVILALLAAAALGA----L----DLAEAALPLLLLLIDEANAVRLEAALALGQIGQEK-- 306 (335)
T ss_pred ------chhHHHHHHHHhccchHHHHHHHHHhcc----c----CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccc--
Confidence 2245556777888888888877766651 1 11233455666778888999999999998876432
Q ss_pred hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHH
Q 015150 334 EITCSQLLPVVINASKDRVPNIKFNVAKVLQS 365 (412)
Q Consensus 334 ~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~ 365 (412)
..........+....+|.........
T Consensus 307 ------~~~a~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
T COG1413 307 ------AVAALLLALEDGDADVRKAALILLEG 332 (335)
T ss_pred ------hHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 23444555677778888777766554
No 45
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.43 E-value=1.2e-10 Score=103.61 Aligned_cols=240 Identities=14% Similarity=0.039 Sum_probs=130.1
Q ss_pred hHHHHHHhc-CCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhh
Q 015150 106 VVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL 184 (412)
Q Consensus 106 l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 184 (412)
.++.+...+ .|++.+++..++.++..... + ..+..+...+.|.++.||..++++++.+.. ...
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~---~-----~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a 118 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED---A-----LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQA 118 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC---h-----HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHH
Confidence 455555555 45556666655555542211 0 124555566666666677777777665542 344
Q ss_pred HHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHH
Q 015150 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 264 (412)
Q Consensus 185 ~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 264 (412)
.+.+..+++++++.||..++.+++.... .-.+.+...++|+++.||..++.+++.+... ...|
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--------~a~~ 181 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELPRR--------LSES 181 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--------cchH
Confidence 5566666666677777666655544221 1234455556677777777776666655432 1333
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHH
Q 015150 265 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV 344 (412)
Q Consensus 265 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l 344 (412)
.+...+.|.++.||..|+..++.+. . ....+.+..+..++....+......+... +. +..++.+
T Consensus 182 ~L~~al~d~~~~VR~aA~~al~~lG----~----~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L 245 (410)
T TIGR02270 182 TLRLYLRDSDPEVRFAALEAGLLAG----S----RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL 245 (410)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHcC----C----HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence 3445567777777777776665432 1 12223444434444433333333333322 11 2556666
Q ss_pred HhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 345 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 345 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
..+++|+. +|..++.+++.+.. ...++.|...++|+. ++..|.+++..|-
T Consensus 246 ~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 246 RELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 66666644 67777777776654 345666666555543 7777777666653
No 46
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.42 E-value=1.3e-10 Score=96.18 Aligned_cols=380 Identities=13% Similarity=0.112 Sum_probs=239.5
Q ss_pred hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhh-cc-Cc--hhhhhhhHHHHHhhc-cCCChHHHHHHHHHHHHHHHHhC
Q 015150 24 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGK-LL-EP--QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVG 98 (412)
Q Consensus 24 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~-~~-~~--~~~~~~l~~~l~~l~-~d~~~~vR~~~~~~l~~l~~~~~ 98 (412)
+..++-.+...+.+|+- +....|..-+..+.. .- ++ .....-+.|-+.+++ +.........++=+|.+++....
T Consensus 69 ~~~elp~lt~~l~SdDi-e~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 69 FYSELPQLTQQLFSDDI-EQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhhhhHHHHHHHhhhHH-HHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc
Confidence 44455444444555543 333334333333332 21 11 112233677777777 44556677888888998886544
Q ss_pred CCC---cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHh---hCHHHHHHhhhhhHHHhccCCc--HHHHHHHHHHHHh
Q 015150 99 PEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI---LNPELAIQHILPCVKELSSDSS--QHVRSALATVIMG 170 (412)
Q Consensus 99 ~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~~~~d~~--~~vr~~~~~~l~~ 170 (412)
... .....+|.+.+++.+++..||..++.+|+.++-- +.+-......+..++.++...- -..-+.+.+.+.+
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 332 3356899999999999999999999999998642 1122222334555555554332 3555667888888
Q ss_pred cCcccCh---hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH----HhhHHHHHHHHhcCCCchHHHHHH
Q 015150 171 MAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVELAEDRHWRVRLAII 243 (412)
Q Consensus 171 l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~~~ 243 (412)
++.--.+ .......+|.+.+++...++++-..|..+++-+...-. +.+ --.+.+.+.+++.+++..+...++
T Consensus 228 lcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~-E~i~avld~g~~~RLvElLs~~sa~iqtPal 306 (526)
T COG5064 228 LCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPN-EKIQAVLDVGIPGRLVELLSHESAKIQTPAL 306 (526)
T ss_pred hhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH-HHHHHHHhcCCcHHHHHHhcCccccccCHHH
Confidence 8754322 23446788999999999999999999988887765421 111 123456788999999988888888
Q ss_pred HHhhHHHhhhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh---hhhhhhHHHHHhhhcCCchHHH
Q 015150 244 EYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYR 317 (412)
Q Consensus 244 ~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~~r 317 (412)
..++.+......+ ...-..++.+..+|+++...+|+.|+.++..+....... .+...++|.|..++....+.+|
T Consensus 307 R~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~k 386 (526)
T COG5064 307 RSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIK 386 (526)
T ss_pred HhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 8887776543221 122335677788899999999999999998876432211 1234688999999999999999
Q ss_pred HHHHHHHHHhccccchh-H-----HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh-------chH--H---H--Hh
Q 015150 318 MTILQAISLLAPVMGSE-I-----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-------DQS--V---V--EK 377 (412)
Q Consensus 318 ~~~~~~l~~l~~~~~~~-~-----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~-------~~~--~---~--~~ 377 (412)
..+++++.......-.. . ..+-++..+..+|.-..-.+-..++.++..+.+.- |.. . + ..
T Consensus 387 KEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~A 466 (526)
T COG5064 387 KEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKA 466 (526)
T ss_pred HHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhc
Confidence 99999999886443221 1 12234444555554322234445566666664321 111 1 1 13
Q ss_pred hHHHHHHhhcCCCCccHHHHHHHHHHHh
Q 015150 378 SIRPCLVELSEDPDVDVRFFATQALQSK 405 (412)
Q Consensus 378 ~i~~~l~~l~~d~~~~vr~~a~~al~~~ 405 (412)
..+..+..+.+..+.++-..|.+.+..+
T Consensus 467 ggmd~I~~~Q~s~n~~iy~KAYsIIe~f 494 (526)
T COG5064 467 GGMDAIHGLQDSVNRTIYDKAYSIIEKF 494 (526)
T ss_pred ccHHHHHHhhhccccHHHHHHHHHHHHH
Confidence 4667777787777777777666655543
No 47
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.41 E-value=2.9e-11 Score=101.11 Aligned_cols=186 Identities=17% Similarity=0.239 Sum_probs=126.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh----hhHHHH---HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh
Q 015150 223 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----GFFDDK---LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 295 (412)
Q Consensus 223 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 295 (412)
+.+.+..--++.+|..|..++..+..+...... ..+.+. +.+.+...+.|....|...|+..+..++..++..
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~ 87 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH 87 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence 344444445678888888888888887765511 122222 3356667788888889999999999999888765
Q ss_pred h--hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhh-HHHHHhhcCCCCchHHHHHHHHHHHHhhhhc-
Q 015150 296 W--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQL-LPVVINASKDRVPNIKFNVAKVLQSLIPIVD- 371 (412)
Q Consensus 296 ~--~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~i-l~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~- 371 (412)
+ +.+.++|.+++.+.+++..+|..+..++..+...++ +...+ .+.+....+++++.+|..++..+..+....+
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 2 356788999999999888899999999999988776 22344 7778888899999999999999999888777
Q ss_pred --hH----HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150 372 --QS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 372 --~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 411 (412)
.. ...+.+.+.+.++++|++++||..|..++..+.+..|+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 11 22367888999999999999999999999998887663
No 48
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8.1e-09 Score=98.05 Aligned_cols=384 Identities=18% Similarity=0.159 Sum_probs=227.7
Q ss_pred hhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhC-CC
Q 015150 23 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVG-PE 100 (412)
Q Consensus 23 ~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~-~~ 100 (412)
.+.+.++..+.+.++|.+..+|.+|++.++.+..+++.+ ....++.-+..+.+- .++..=+.+|-+|++++..-- ..
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 345567777788889999999999999999999999864 333333333333221 123334689999999886321 11
Q ss_pred CcccchHHHHHHhcC--------CChHHHHHHHHHHHHHHHHhhCHHHHH---HhhhhhH-HHhccCCcHHHHHHHHHHH
Q 015150 101 PTRSDVVPAYVRLLR--------DNEAEVRIAAAGKVTKICRILNPELAI---QHILPCV-KELSSDSSQHVRSALATVI 168 (412)
Q Consensus 101 ~~~~~l~~~l~~~l~--------d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~~l-~~~~~d~~~~vr~~~~~~l 168 (412)
....+++|.+...+. .....||.+|+..+-+++....+.... +.+.+.+ ...+=|++-.+|++|..++
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 123578888887653 234689999999999999988776433 3333333 3345699999999998888
Q ss_pred HhcCcccCh-----hHH-------------------------HHhhHHHHHHhhcc----cChHHHHHHHHHHHHHHHhh
Q 015150 169 MGMAPILGK-----DAT-------------------------IEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVI 214 (412)
Q Consensus 169 ~~l~~~~~~-----~~~-------------------------~~~l~~~l~~~l~d----~~~~vr~~~~~~l~~i~~~~ 214 (412)
.+.....|. +.. ..+.-|.+..++.. =+..+|..++.+|..+...
T Consensus 496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~- 574 (1133)
T KOG1943|consen 496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT- 574 (1133)
T ss_pred HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh-
Confidence 765433211 110 11233444444443 2578899999999986544
Q ss_pred chhhHHhhHHHHHHHHhcCCCchHHHHHHHH-------------------------------------------------
Q 015150 215 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEY------------------------------------------------- 245 (412)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~------------------------------------------------- 245 (412)
.++......+|.+.......+...|......
T Consensus 575 ~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~ 654 (1133)
T KOG1943|consen 575 EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQA 654 (1133)
T ss_pred hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHH
Confidence 2222223333433333333333333222221
Q ss_pred ----hhHHHhhhC---hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh--ChhhhhhhhHHHHHhhhcCC-chH
Q 015150 246 ----IPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF--GPDWAMQHIVPQVLEMINNP-HYL 315 (412)
Q Consensus 246 ----l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~l~~l~~~~~~~-~~~ 315 (412)
+..+...-. .+.+.+...-++.+.+.+++ .+|.+|..+++.++..+ +.+.....++......+.+. +..
T Consensus 655 ~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~ 733 (1133)
T KOG1943|consen 655 TLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEER 733 (1133)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHH
Confidence 111111000 11222333344445555566 78888888888887654 11211123444444444444 577
Q ss_pred HHHHHHHHHHHhccccchhHHHHhhHHHHHhhcC-CCCchHHHHHHHHHHHHhhhhch-------HHHHhhHHHHHHhhc
Q 015150 316 YRMTILQAISLLAPVMGSEITCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ-------SVVEKSIRPCLVELS 387 (412)
Q Consensus 316 ~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~-------~~~~~~i~~~l~~l~ 387 (412)
+|....-+++.+...+=.-...+++...++...- |..+.-|...+.++.++...++. +.+.+.++..+....
T Consensus 734 ~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYt 813 (1133)
T KOG1943|consen 734 IRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYT 813 (1133)
T ss_pred HHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc
Confidence 8888777777765322222234455555555443 33677899999999999887773 234456666666666
Q ss_pred CCCCcc----HHHHHHHHHHHhHHhh
Q 015150 388 EDPDVD----VRFFATQALQSKDQVM 409 (412)
Q Consensus 388 ~d~~~~----vr~~a~~al~~~~~~~ 409 (412)
.|...| ||..|++++..+.-.+
T Consensus 814 td~rGDVGswVReaAm~al~~~~~~l 839 (1133)
T KOG1943|consen 814 TDSRGDVGSWVREAAMKALSSLLDTL 839 (1133)
T ss_pred cccCccHHHHHHHHHHHHHHhhhhhh
Confidence 665554 8999999998876543
No 49
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.40 E-value=1.6e-11 Score=101.48 Aligned_cols=339 Identities=15% Similarity=0.108 Sum_probs=224.9
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhc-CCChHHHHHHHHHHHHHHHHhhCHH---H
Q 015150 69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPE---L 140 (412)
Q Consensus 69 ~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~---~ 140 (412)
|.+.+.+.+.+-.....+..-+.++...-.... +..-++|.+.+++ +....-.+-.|..+|..++...... .
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 545444433344444444444433332211111 1234788899988 5555667778888998887754443 2
Q ss_pred HHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC-h-hHH-HHhhHHHHHHhhcccCh--HHHHHHHHHHHHHHHhhc
Q 015150 141 AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG-K-DAT-IEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIG 215 (412)
Q Consensus 141 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~-~~~-~~~l~~~l~~~l~d~~~--~vr~~~~~~l~~i~~~~~ 215 (412)
.....+|.+.+++.+++..||..+++++|+++..-. . +.+ ....+..+..++..+.. .+-..+...|+.+++.-.
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn 233 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence 234578999999999999999999999999984321 1 111 12333444455444333 333344556667765543
Q ss_pred h--h-hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 015150 216 I--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 289 (412)
Q Consensus 216 ~--~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 289 (412)
+ + ......+|.+.+++-..++.+-.-++.+++.++..-... .+...+.+-+..+|.+++..|..-|++.+|.++
T Consensus 234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV 313 (526)
T COG5064 234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV 313 (526)
T ss_pred CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence 2 1 223567899999999999999999999998887643221 122334566788899999999999999999887
Q ss_pred HHhChh---hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHH
Q 015150 290 EEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVL 363 (412)
Q Consensus 290 ~~~~~~---~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l 363 (412)
..-... .+.--.++.+..++.++...+|..+++.++.+....... -+...++|.++++++.-...+|+.+++++
T Consensus 314 TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAi 393 (526)
T COG5064 314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393 (526)
T ss_pred ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 533211 122346778888899999999999999999987544332 24557999999999999999999999999
Q ss_pred HHHhhhh-c-hHH----HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 364 QSLIPIV-D-QSV----VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 364 ~~l~~~~-~-~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
......- + |+. ..+.++..|..++.-.|..+-+.+..++..+..
T Consensus 394 sNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 394 SNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 8875432 1 121 235566667777766677677777777776654
No 50
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=9.6e-10 Score=98.78 Aligned_cols=254 Identities=14% Similarity=0.147 Sum_probs=150.2
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc-Ch-h-----
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL-GK-D----- 178 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~-~----- 178 (412)
+..-+..+.+|.+..||..|++.+..+.+.+. ..+.+.....++++|.+..||.++++.+...++.. ++ +
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFK---LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccccc---ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 33335555566666666666666655554211 11223444455556666666666655544443332 00 0
Q ss_pred -HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH----Hhh-------------------------------
Q 015150 179 -ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQS------------------------------- 222 (412)
Q Consensus 179 -~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~----~~~------------------------------- 222 (412)
...+..+..+++.+.|-+..||..|+++|+.+.+... +.+ .+.
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ 354 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN 354 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence 0112333444555556666666666666655543311 111 011
Q ss_pred --------------H-----HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHH
Q 015150 223 --------------L-----LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAAN 283 (412)
Q Consensus 223 --------------~-----~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 283 (412)
+ ...+..-++|+...||.+++..++.++.... .+...-+.++..+++|+...||..|+.
T Consensus 355 advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP--~FA~~aldfLvDMfNDE~~~VRL~ai~ 432 (823)
T KOG2259|consen 355 ADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP--GFAVRALDFLVDMFNDEIEVVRLKAIF 432 (823)
T ss_pred ccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1 1223444677778899999999999886543 345667888999999999999999999
Q ss_pred HHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHH
Q 015150 284 NVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 363 (412)
Q Consensus 284 ~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l 363 (412)
+|..+...+. +.+..++.+...+.|.+..+|++.-+.|+..- .-..+ .....+..+++.+. ..|.=|..+.+++
T Consensus 433 aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~~~-~~d~~-~i~m~v~~lL~~L~-kyPqDrd~i~~cm 506 (823)
T KOG2259|consen 433 ALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKNAR-VSDLE-CIDMCVAHLLKNLG-KYPQDRDEILRCM 506 (823)
T ss_pred HHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCcHH-HHHHHHHHHHHHhh-hCCCCcHHHHHHH
Confidence 9999988743 35778899999999999999999988887642 11111 22222333333332 2334456777888
Q ss_pred HHHhhhhc
Q 015150 364 QSLIPIVD 371 (412)
Q Consensus 364 ~~l~~~~~ 371 (412)
+.|.+..+
T Consensus 507 ~~iGqnH~ 514 (823)
T KOG2259|consen 507 GRIGQNHR 514 (823)
T ss_pred HHHhccCh
Confidence 88876544
No 51
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.37 E-value=6.3e-09 Score=92.32 Aligned_cols=220 Identities=15% Similarity=0.145 Sum_probs=131.8
Q ss_pred HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhh-chhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh----
Q 015150 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---- 255 (412)
Q Consensus 181 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~-~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---- 255 (412)
..++.|.+...++|....|...+++++..+.... +.+.+ +..+..+..+++.+....|-+++..+..++...+.
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v 340 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV 340 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee
Confidence 3567788888888888899999999999886543 54443 67778888888888888888888888887754321
Q ss_pred -----------------------------hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh----------
Q 015150 256 -----------------------------GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---------- 296 (412)
Q Consensus 256 -----------------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---------- 296 (412)
+...+.++..+-.++.|-+..-+.-++.++..+.-.+..++
T Consensus 341 cN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~ 420 (898)
T COG5240 341 CNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSS 420 (898)
T ss_pred cChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 11223334444444433333323333333333333333222
Q ss_pred --------hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch---------------------hHHHHhhHHHHHhh
Q 015150 297 --------AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---------------------EITCSQLLPVVINA 347 (412)
Q Consensus 297 --------~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---------------------~~~~~~il~~l~~~ 347 (412)
+.+..+..+....+. .++-|+.+++.++.+.+-+.- ..|..++...+.
T Consensus 421 L~~eGg~eFK~~~Vdaisd~~~~-~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i-- 497 (898)
T COG5240 421 LLQEGGLEFKKYMVDAISDAMEN-DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLI-- 497 (898)
T ss_pred HHhcccchHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH--
Confidence 111122222222221 133444444444444322210 012222222211
Q ss_pred cCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 348 SKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 348 l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
=.+.-||.+|..+|++++-...+....+.+...++.+++|.|.+||..|.-++..+-
T Consensus 498 --LEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 498 --LENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred --HhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 123349999999999999888777777788899999999999999999999887664
No 52
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.36 E-value=2.8e-11 Score=109.82 Aligned_cols=254 Identities=17% Similarity=0.209 Sum_probs=208.8
Q ss_pred cCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcC
Q 015150 154 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 233 (412)
Q Consensus 154 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d 233 (412)
.-.+..-|......+....+.+..+.....++|.+...+.-.+ --...+..+-.++..+..+.+...++|.+.++.+.
T Consensus 264 ~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~ 341 (690)
T KOG1243|consen 264 RLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKS 341 (690)
T ss_pred ccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcC
Confidence 4456666777777777777777888778888888877654332 11122333444555556566778899999999999
Q ss_pred CCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCc
Q 015150 234 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH 313 (412)
Q Consensus 234 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~ 313 (412)
.+-.+|...+..+......+.++.+.+.+.|.+...+.|.++.+|+.+++++..++..++...+..+++..+...-.|.+
T Consensus 342 ~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~ 421 (690)
T KOG1243|consen 342 PDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH 421 (690)
T ss_pred cchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999998888889988888888888
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCcc
Q 015150 314 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVD 393 (412)
Q Consensus 314 ~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~ 393 (412)
..+|....-+++.++..+........+.-.+...+.|+.+.-|.++...+....+.+........|+|.+..+.-|++..
T Consensus 422 ~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~ 501 (690)
T KOG1243|consen 422 GGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKT 501 (690)
T ss_pred CcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccc
Confidence 88999999999999887765532222333444568999999999999999988888888888899999999999999999
Q ss_pred HHHHHHHHHHHhHHhh
Q 015150 394 VRFFATQALQSKDQVM 409 (412)
Q Consensus 394 vr~~a~~al~~~~~~~ 409 (412)
||..+-+++..+....
T Consensus 502 vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 502 VRDTAEKAIRQFLEKL 517 (690)
T ss_pred hhhHHHHHHHHHHhhh
Confidence 9999999998887654
No 53
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=8.9e-10 Score=101.16 Aligned_cols=356 Identities=14% Similarity=0.146 Sum_probs=200.5
Q ss_pred HHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHH
Q 015150 29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVP 108 (412)
Q Consensus 29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~ 108 (412)
.+.+.+=..|+++.+|..|++..+.+- .+.....+...+....+|.++.+|+.++-+..++...-..-....-+++
T Consensus 88 vnt~~kD~~d~np~iR~lAlrtm~~l~----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~ 163 (734)
T KOG1061|consen 88 VNTFLKDCEDPNPLIRALALRTMGCLR----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVD 163 (734)
T ss_pred hhhhhccCCCCCHHHHHHHhhceeeEe----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhH
Confidence 344444456666666666655544332 2334555666666666666666666666666666554444444445566
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHhhC---------------------------------------HHH-HHHhhhhh
Q 015150 109 AYVRLLRDNEAEVRIAAAGKVTKICRILN---------------------------------------PEL-AIQHILPC 148 (412)
Q Consensus 109 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---------------------------------------~~~-~~~~~~~~ 148 (412)
.+..++.|+++.|-..|+.++..+.+.-+ ++. -...++..
T Consensus 164 ~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r 243 (734)
T KOG1061|consen 164 ALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICER 243 (734)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 66666666666666666666666654432 110 01112222
Q ss_pred HHHhccCCcHHHHHHHHHHHHhcCcccCh--hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh---------
Q 015150 149 VKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--------- 217 (412)
Q Consensus 149 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~--------- 217 (412)
+...+++.+..|-..+.+.+......+.. +.....+-|.+..++.. .+++..-+++.+..+....+.-
T Consensus 244 ~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~-~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff 322 (734)
T KOG1061|consen 244 LTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSS-ESEIQYVALRNINLILQKRPEILKVEIKVFF 322 (734)
T ss_pred hhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecc-cchhhHHHHhhHHHHHHhChHHHHhHhHeee
Confidence 22222333333333333333333222221 11112233333333333 3477777777776665442210
Q ss_pred -----------------------hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCch
Q 015150 218 -----------------------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKV 274 (412)
Q Consensus 218 -----------------------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 274 (412)
...+.+++-+.....+-+...-..++.+++.++...... ...++.++.+++-..
T Consensus 323 ~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~ 399 (734)
T KOG1061|consen 323 CKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKV 399 (734)
T ss_pred eecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhcc
Confidence 011334455555566666666666778888777665443 457778888888777
Q ss_pred hHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcC-CchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCc
Q 015150 275 YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP 353 (412)
Q Consensus 275 ~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~ 353 (412)
..|.+.+...+..+...+...+ +.+.+.+-..+.. .++..|.+.++.+|+-++.++.. .+++..+++...|...
T Consensus 400 ~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~elL~~f~en~~dE~~ 474 (734)
T KOG1061|consen 400 DYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LELLESFLENFKDETA 474 (734)
T ss_pred cceeeehhHHHHhhhhcCCCch--hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhcccchH
Confidence 7777778888888887775542 4555555544443 34678999999999999888764 5678888999999999
Q ss_pred hHHHHHHHHHHHHhhhhchHHHHhhHHHHH-HhhcCC-CCccHHHHHH
Q 015150 354 NIKFNVAKVLQSLIPIVDQSVVEKSIRPCL-VELSED-PDVDVRFFAT 399 (412)
Q Consensus 354 ~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l-~~l~~d-~~~~vr~~a~ 399 (412)
.|+...+.+.-+++-..++ -++.++..+ .....| .++|+|..+.
T Consensus 475 ~Vql~LLta~ik~Fl~~p~--~tq~~l~~vL~~~~~d~~~~dlrDr~l 520 (734)
T KOG1061|consen 475 EVQLELLTAAIKLFLKKPT--ETQELLQGVLPLATADTDNPDLRDRGL 520 (734)
T ss_pred HHHHHHHHHHHHHHhcCCc--cHHHHHHHHHhhhhccccChhhhhhHH
Confidence 9998888777666544443 223333333 334444 3347776654
No 54
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.30 E-value=1.7e-09 Score=96.38 Aligned_cols=240 Identities=15% Similarity=0.071 Sum_probs=163.5
Q ss_pred HHHHHHHhc-cCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccch
Q 015150 28 IMSIFEELT-QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV 106 (412)
Q Consensus 28 l~~~l~~l~-~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l 106 (412)
.++.+...+ .++++.++..++..+.... ....+..+...+.|++..||..++++|+.+.. ...
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a 118 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQE--------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQA 118 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccC--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHH
Confidence 445555556 5666777766555543211 11236777788888888899999999987653 567
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHH
Q 015150 107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP 186 (412)
Q Consensus 107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 186 (412)
.+.+..+++++++.||..++.+++.... .-.+.+..+++|+++.||..++.+++.+.. ....|
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~ 181 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELPR--------RLSES 181 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchH
Confidence 7888888899999999888877775221 123566677789999999999999988763 24556
Q ss_pred HHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHH
Q 015150 187 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 266 (412)
Q Consensus 187 ~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l 266 (412)
.+...+.|.++.||..++.++..+.. ....+.+..+..+..+..+..+...+... |. +..++.+
T Consensus 182 ~L~~al~d~~~~VR~aA~~al~~lG~--------~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L 245 (410)
T TIGR02270 182 TLRLYLRDSDPEVRFAALEAGLLAGS--------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL 245 (410)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence 67777889999999998888866643 12334455544555555544444333222 22 2466677
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhc
Q 015150 267 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 328 (412)
Q Consensus 267 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~ 328 (412)
..+++|+. +|..++.+++.+.. ...++.+...+.|+. ++..+-+++..+.
T Consensus 246 ~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 246 RELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 78888865 88889888886543 446777888787765 6777888887775
No 55
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.29 E-value=1.2e-10 Score=105.76 Aligned_cols=255 Identities=13% Similarity=0.196 Sum_probs=211.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhc
Q 015150 114 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK 193 (412)
Q Consensus 114 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 193 (412)
+.-.+.+-|..-...|....+.++++.....++|.+...+.-.+ --..+...+-.++..+..+.+...++|.+.++.+
T Consensus 263 l~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~ 340 (690)
T KOG1243|consen 263 LRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFK 340 (690)
T ss_pred cccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhc
Confidence 34445667888888888888888899888889999988764322 1112333344455555556677889999999999
Q ss_pred ccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCc
Q 015150 194 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK 273 (412)
Q Consensus 194 d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 273 (412)
..+..+|...++.+..+...+.++.+.+.++|.+...+.|.++.+|...+..+..++..++...+...++..+-.+-.|+
T Consensus 341 ~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~ 420 (690)
T KOG1243|consen 341 SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDE 420 (690)
T ss_pred CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888888888899
Q ss_pred hhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCc
Q 015150 274 VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP 353 (412)
Q Consensus 274 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~ 353 (412)
+..+|.....+++++.....+......+...+...++|+-..-|.+++..+....+.+.......+|+|.+.-+.-|++.
T Consensus 421 ~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~ 500 (690)
T KOG1243|consen 421 HGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEK 500 (690)
T ss_pred cCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCccc
Confidence 99999999999999887765443333444566667889888899999999999999888888899999999999999999
Q ss_pred hHHHHHHHHHHHHhhhh
Q 015150 354 NIKFNVAKVLQSLIPIV 370 (412)
Q Consensus 354 ~vR~~~~~~l~~l~~~~ 370 (412)
.||..+.+++.......
T Consensus 501 ~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 501 TVRDTAEKAIRQFLEKL 517 (690)
T ss_pred chhhHHHHHHHHHHhhh
Confidence 99999999988776543
No 56
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.6e-08 Score=93.14 Aligned_cols=370 Identities=15% Similarity=0.154 Sum_probs=187.2
Q ss_pred HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccch
Q 015150 27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV 106 (412)
Q Consensus 27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l 106 (412)
.+.+.+.+=+++.+.-+-..|+-+++.++ ++| ....+.|.+..+++++++.+|+.|+.|..++.+..++-. ..+
T Consensus 107 LltNslknDL~s~nq~vVglAL~alg~i~---s~E-mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~--e~f 180 (866)
T KOG1062|consen 107 LLTNSLKNDLNSSNQYVVGLALCALGNIC---SPE-MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV--EHF 180 (866)
T ss_pred HHHHHHHhhccCCCeeehHHHHHHhhccC---CHH-HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH--HHh
Confidence 34445555555656555555555555444 233 566677777777777777777777777777766544322 345
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH-HHH----HhhhhhHHHhcc-----------CCcHHHHHHHHHHHHh
Q 015150 107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAI----QHILPCVKELSS-----------DSSQHVRSALATVIMG 170 (412)
Q Consensus 107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~----~~~~~~l~~~~~-----------d~~~~vr~~~~~~l~~ 170 (412)
++...+++.+.+..|-.+++..+..+++.-++. ... ..++..+.++.. =++|..+..+...+.-
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri 260 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI 260 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH
Confidence 555666666666666555555555555543221 111 111222221111 1244444444433333
Q ss_pred cCcccCh-hHHH-------------------HhhHHHHHHhhc-ccChHHHHHHHHHHHHHHHhhchh------------
Q 015150 171 MAPILGK-DATI-------------------EQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGID------------ 217 (412)
Q Consensus 171 l~~~~~~-~~~~-------------------~~l~~~l~~~l~-d~~~~vr~~~~~~l~~i~~~~~~~------------ 217 (412)
+.+.-.+ ...+ .-|...+...+. ++++..|..+++.|++|...-+.+
T Consensus 261 LGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~ 340 (866)
T KOG1062|consen 261 LGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRV 340 (866)
T ss_pred hcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhh
Confidence 3221100 0000 112222222211 345666777777777665331111
Q ss_pred -----hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 015150 218 -----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 292 (412)
Q Consensus 218 -----~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 292 (412)
...+.--..+.++++|++..+|+-+++..-.+.....-.. ++.-++.+|...+.+.+...+..+..+++.+
T Consensus 341 V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~----mv~eLl~fL~~~d~~~k~~~as~I~~laEkf 416 (866)
T KOG1062|consen 341 VQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRV----MVKELLEFLESSDEDFKADIASKIAELAEKF 416 (866)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 1123445678889999999999999988877776544332 4444556666667888998888999999888
Q ss_pred Chh--hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHh-ccccchh--HHHHhhHHHHHh-hc-CCCCchHHHHHHHHHHH
Q 015150 293 GPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLL-APVMGSE--ITCSQLLPVVIN-AS-KDRVPNIKFNVAKVLQS 365 (412)
Q Consensus 293 ~~~--~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l-~~~~~~~--~~~~~il~~l~~-~l-~d~~~~vR~~~~~~l~~ 365 (412)
.++ |+.+..+..+. ....-+|.-++..+-.+ +..++.. +....+.-.+.. .+ .-+.+..-..+.|++|+
T Consensus 417 aP~k~W~idtml~Vl~----~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGE 492 (866)
T KOG1062|consen 417 APDKRWHIDTMLKVLK----TAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGE 492 (866)
T ss_pred CCcchhHHHHHHHHHH----hcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhh
Confidence 764 44443333332 22222333333333333 2222322 111112111111 11 11234445677788887
Q ss_pred Hhhhhch--------HHHHhhHHHHHHhhc--CCCCccHHHHHHHHHHHhHHhhh
Q 015150 366 LIPIVDQ--------SVVEKSIRPCLVELS--EDPDVDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 366 l~~~~~~--------~~~~~~i~~~l~~l~--~d~~~~vr~~a~~al~~~~~~~~ 410 (412)
...-+-+ .+..+++...+..++ ...+..++..+..|+-++...++
T Consensus 493 YGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~ 547 (866)
T KOG1062|consen 493 YGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFH 547 (866)
T ss_pred hhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcc
Confidence 7632211 122244555554432 12336677777777776665443
No 57
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.27 E-value=4.9e-10 Score=93.74 Aligned_cols=188 Identities=20% Similarity=0.231 Sum_probs=130.9
Q ss_pred chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH----HH---HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh
Q 015150 105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LA---IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177 (412)
Q Consensus 105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~---~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 177 (412)
.+.+.+..--++.+|..|..++..+..+.....+. .+ ...+++.+...++|....|...++.++..++..+|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 34444544456778888888888888877655111 12 123445666677787888889999999999988877
Q ss_pred hH--HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc-hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC
Q 015150 178 DA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 254 (412)
Q Consensus 178 ~~--~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~-~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 254 (412)
.. ..+.++|.+.+.+.|....+|..+..+|..++...+ ... .+.+.+....++++|.+|..++.++..+....+
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~---~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK---ILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H---HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 53 347889999999999999999999999999998876 222 237888889999999999999999999988887
Q ss_pred ---hh----hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh
Q 015150 255 ---VG----FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 295 (412)
Q Consensus 255 ---~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 295 (412)
.. ...+.+.+.+..++.|.+++||.+|-.++..+.+.+|..
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 21 123668999999999999999999999999999888764
No 58
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=99.22 E-value=1.5e-09 Score=103.30 Aligned_cols=189 Identities=20% Similarity=0.248 Sum_probs=156.2
Q ss_pred HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC---hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh
Q 015150 220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 296 (412)
Q Consensus 220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 296 (412)
.+.+-+.+..-+.+++|.-|..+++.+....+.-+ ...+...+...+-..+.|.|..|-..|+..+..++..++..+
T Consensus 251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence 45566777888899999999999998887776655 122334444555556889999999999999999999887653
Q ss_pred --hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch--
Q 015150 297 --AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-- 372 (412)
Q Consensus 297 --~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~-- 372 (412)
+...++|.+++.+++....+|.+++.++..++...+ ...+.+.+...+++++|.+|..+...+......+++
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 346788999999999999999999999999887544 456788888999999999999999999999888873
Q ss_pred --HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhCC
Q 015150 373 --SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 412 (412)
Q Consensus 373 --~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~~ 412 (412)
......+.|.+....+|.+.+||.++..+++.+..+.|++
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 2345789999999999999999999999999999998863
No 59
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=1.4e-08 Score=91.51 Aligned_cols=242 Identities=14% Similarity=0.160 Sum_probs=166.6
Q ss_pred CChHHHHHHHHHHHHHHHHhhCHH-HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcc
Q 015150 116 DNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD 194 (412)
Q Consensus 116 d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 194 (412)
+.....|..+......++..-..- ...++++.-+..+..|.+..||..+++.+-.+.+-+. ..+.+.....+.+.|
T Consensus 169 ~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L~~~~Y~~A~~~lsD 245 (823)
T KOG2259|consen 169 ISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK---LSKACYSRAVKHLSD 245 (823)
T ss_pred cccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc---ccHHHHHHHHHHhcc
Confidence 333445555555554443321111 1233455557778889999999999999888776221 124566777888999
Q ss_pred cChHHHHHHHHHHHHHHHhhc--------hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHH----H
Q 015150 195 EFPDVRLNIISKLDQVNQVIG--------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK----L 262 (412)
Q Consensus 195 ~~~~vr~~~~~~l~~i~~~~~--------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~----l 262 (412)
++..||.+|++.+.-+++... .....+..+..+...+.|-+|.||..+.+.++.+-.... +.+.+. +
T Consensus 246 ~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-e~i~QTLdKKl 324 (823)
T KOG2259|consen 246 DYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-EIIQQTLDKKL 324 (823)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-HHHHHHHHHHH
Confidence 999999999998888876651 112345677788888999999999999999987754321 111111 1
Q ss_pred H--------------------------------------------------HHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 015150 263 G--------------------------------------------------ALCMQWLKDKVYSIRDAAANNVKRLAEEF 292 (412)
Q Consensus 263 ~--------------------------------------------------~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 292 (412)
+ ..++..+.|+-.+||.+|...+..++..
T Consensus 325 ms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s- 403 (823)
T KOG2259|consen 325 MSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS- 403 (823)
T ss_pred hhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-
Confidence 1 2344456777888999998888887753
Q ss_pred ChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150 293 GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 366 (412)
Q Consensus 293 ~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 366 (412)
...+....+..+...++|.-..+|..++.++..++..+. ..+..++.++..+.|.+++||.+.-..|...
T Consensus 404 -sP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 404 -SPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred -CCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 223455677888888888888899999888888876533 4567788888888898889987776666543
No 60
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=8.3e-07 Score=81.25 Aligned_cols=218 Identities=14% Similarity=0.125 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcc
Q 015150 24 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR 103 (412)
Q Consensus 24 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~ 103 (412)
....+-+-+..++++..+.+|+.|+-++-.+.-..++. ...-+|-+..-+.|+|+.|..+++..+..+++..+....
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA--lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL- 217 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA--LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL- 217 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh--HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-
Confidence 34556666677788777888887777776666554332 345667777778888888888888888888876554432
Q ss_pred cchHHHHHHhcC-CChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc-----c-C
Q 015150 104 SDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI-----L-G 176 (412)
Q Consensus 104 ~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~-----~-~ 176 (412)
.+-|.+.+++. ..+..+-...++.++++...- | .....++|.+..++...+. -....+|+..+... . .
T Consensus 218 -~LAP~ffkllttSsNNWmLIKiiKLF~aLtplE-P-RLgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 218 -QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE-P-RLGKKLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred -cccHHHHHHHhccCCCeehHHHHHHHhhccccC-c-hhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCCCC
Confidence 35566666543 222334344444444443321 1 1233466666666543321 11222333332211 1 1
Q ss_pred hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHh
Q 015150 177 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 251 (412)
Q Consensus 177 ~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 251 (412)
.....+..+.-+..++.|+|+..+.-++-+++.+++.- +.. ....-..+.+++.|.++.+|.-++..+..+..
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH-p~~-Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH-PKA-VQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC-HHH-HHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 22233455666777788888888888887887776542 222 23445667788888888888887777766553
No 61
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.1e-07 Score=87.86 Aligned_cols=290 Identities=17% Similarity=0.180 Sum_probs=157.9
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhh
Q 015150 69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 148 (412)
Q Consensus 69 ~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 148 (412)
..+.+-+++++.-|--.|+-+++.++ +.+. ..++.|.+.++++..++.||+.|+.|..++....++- .+++++.
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~---s~Em-ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l--~e~f~~~ 183 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNIC---SPEM-ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL--VEHFVIA 183 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccC---CHHH-hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--HHHhhHH
Confidence 34444555566555555555555443 3444 3678999999999999999999999999988765543 4667888
Q ss_pred HHHhccCCcHHHHHHHHHHHHhcCcccChhH-HHHhhHHHHHHhhcc---------------cChHHHHHHHHHHHHHHH
Q 015150 149 VKELSSDSSQHVRSALATVIMGMAPILGKDA-TIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQ 212 (412)
Q Consensus 149 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d---------------~~~~vr~~~~~~l~~i~~ 212 (412)
..+++.+++..|-.+.+..+..++..-.... ..+.++|.|...+++ ++|..+...++.|.-+++
T Consensus 184 ~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq 263 (866)
T KOG1062|consen 184 FRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQ 263 (866)
T ss_pred HHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcC
Confidence 8889999998888888888777775432211 113455665555532 457777777766666654
Q ss_pred hhchhhHHhhHHHHHHHHhcCC--CchHHHH-HHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 015150 213 VIGIDLLSQSLLPAIVELAEDR--HWRVRLA-IIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 289 (412)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~d~--~~~vr~~-~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 289 (412)
.-. + ..+.+-..+.+..... +-.+-.+ ..+++..+........+...-..++-++|..++.++|.-|+..|...+
T Consensus 264 ~d~-d-aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V 341 (866)
T KOG1062|consen 264 NDA-D-ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVV 341 (866)
T ss_pred CCc-c-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhh
Confidence 411 1 1122222232322211 1111111 112222222222222233333444455555555555555555555544
Q ss_pred HHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh
Q 015150 290 EEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 369 (412)
Q Consensus 290 ~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 369 (412)
..= +...+.--..+.+.++|++..+|..+++..-.+...-...... ..++.++...++..|..++.-+..++..
T Consensus 342 ~~d--~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv----~eLl~fL~~~d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 342 QQD--PTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMV----KELLEFLESSDEDFKADIASKIAELAEK 415 (866)
T ss_pred cCC--cHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHH----HHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 321 1122334455666666666666666666666655433322223 3333333333455666666666666655
Q ss_pred hch
Q 015150 370 VDQ 372 (412)
Q Consensus 370 ~~~ 372 (412)
+.|
T Consensus 416 faP 418 (866)
T KOG1062|consen 416 FAP 418 (866)
T ss_pred cCC
Confidence 555
No 62
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.15 E-value=1.3e-06 Score=86.35 Aligned_cols=400 Identities=18% Similarity=0.224 Sum_probs=224.0
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChH
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWR 81 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~ 81 (412)
+.+|-.|.+|+..++..-+.=-....+...+-.-+.|....||.+|++.+|...-.. .+........+..-..|+...
T Consensus 830 ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~--~e~~~qyY~~i~erIlDtgvs 907 (1692)
T KOG1020|consen 830 IALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI--PELIFQYYDQIIERILDTGVS 907 (1692)
T ss_pred HHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc--HHHHHHHHHHHHhhcCCCchh
Confidence 578999999999888743221123334444555577888899999999998777553 234456677778888899999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHh-hCH-----H----------------
Q 015150 82 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI-LNP-----E---------------- 139 (412)
Q Consensus 82 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~~~-----~---------------- 139 (412)
||+.+++.+..++...++=....++.-.+....+|++..|++.+.+.+.++.-. .+. .
T Consensus 908 VRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~ 987 (1692)
T KOG1020|consen 908 VRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQV 987 (1692)
T ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHH
Confidence 999999999999986654333445555566667888887888888877765210 000 0
Q ss_pred ----HHHH----------------------------hhhhhHHHh------------ccCCcHHHHHHH-HHHHHhcCcc
Q 015150 140 ----LAIQ----------------------------HILPCVKEL------------SSDSSQHVRSAL-ATVIMGMAPI 174 (412)
Q Consensus 140 ----~~~~----------------------------~~~~~l~~~------------~~d~~~~vr~~~-~~~l~~l~~~ 174 (412)
.+.+ +.+..+.++ ..+.+..+|..+ +..+..++..
T Consensus 988 d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~Fski 1067 (1692)
T KOG1020|consen 988 DLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKI 1067 (1692)
T ss_pred HHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhc
Confidence 0000 011111111 112233344332 2223322211
Q ss_pred ----cChhHHHHhhHHHH-----------------------HHhhcc-------------------cChHHHHHHHHHHH
Q 015150 175 ----LGKDATIEQLLPIF-----------------------LSLLKD-------------------EFPDVRLNIISKLD 208 (412)
Q Consensus 175 ----~~~~~~~~~l~~~l-----------------------~~~l~d-------------------~~~~vr~~~~~~l~ 208 (412)
+.+. ....+.|++ ..++.. ..-..-..+..+++
T Consensus 1068 rP~Llt~k-hv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~ 1146 (1692)
T KOG1020|consen 1068 RPQLLTKK-HVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLG 1146 (1692)
T ss_pred CchhccHH-HHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 1100 011111111 111111 11112233445555
Q ss_pred HHHHhhchh-hHHhhHHHHHHHHh-------cCC----C-chHHHHHHHHhhHHHhhh--------Ch------hhHHHH
Q 015150 209 QVNQVIGID-LLSQSLLPAIVELA-------EDR----H-WRVRLAIIEYIPLLASQL--------GV------GFFDDK 261 (412)
Q Consensus 209 ~i~~~~~~~-~~~~~~~~~l~~~~-------~d~----~-~~vr~~~~~~l~~l~~~~--------~~------~~~~~~ 261 (412)
.+......+ .+...++..+.+.+ .+. + +..++ .+.+++.+++.+ |+ +...+.
T Consensus 1147 sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~R-siftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~ 1225 (1692)
T KOG1020|consen 1147 SLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQR-SIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEK 1225 (1692)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHH-HHHHHHHHHHhccCCCccCCCccchhhhhhHHHH
Confidence 555432211 11122222222211 111 1 33333 456777777754 22 234566
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCc-hHH-HHHHHHHHHHhc-----------
Q 015150 262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH-YLY-RMTILQAISLLA----------- 328 (412)
Q Consensus 262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~-~~~-r~~~~~~l~~l~----------- 328 (412)
++..++-+.++.+..+|..|+.++|.++-..+.=.....+...+.+.+.+.+ ... +.-++..+..+.
T Consensus 1226 v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~ 1305 (1692)
T KOG1020|consen 1226 VLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKG 1305 (1692)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7777777888999999999999999998754432333344444444444332 111 333332222211
Q ss_pred -------------------cccchh----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHh
Q 015150 329 -------------------PVMGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE 385 (412)
Q Consensus 329 -------------------~~~~~~----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~ 385 (412)
...|.. ...+.+++.++..+-|.+..+|..+++.+..+... |- ..--..+|.|..
T Consensus 1306 ~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~Q-GL-VhP~~cvPtLIA 1383 (1692)
T KOG1020|consen 1306 KNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQ-GL-VHPVHCVPTLIA 1383 (1692)
T ss_pred cchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHc-cC-CCccchhhhhee
Confidence 111111 24667777788888889999999999999877532 10 111367999999
Q ss_pred hcCCCCccHHHHHHHHHHHhHH
Q 015150 386 LSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 386 l~~d~~~~vr~~a~~al~~~~~ 407 (412)
+.+||....|..|-.-+..+-+
T Consensus 1384 L~Tdp~~~~r~~Ad~LL~eid~ 1405 (1692)
T KOG1020|consen 1384 LETDPSQAIRHVADELLKEIDE 1405 (1692)
T ss_pred ecCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999888877654
No 63
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1e-06 Score=84.28 Aligned_cols=403 Identities=16% Similarity=0.129 Sum_probs=223.9
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCC-chHHHHHHHHhHHHHhhc-cCchhhhhhhHHHHHhhcc---
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKL-LEPQDCVAHILPVIVNFSQ--- 76 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~i~~~-~~~~~~~~~l~~~l~~l~~--- 76 (412)
..||..|++.++.+.+..+.+- ....+.-+..+.+-- ++..=..||-+++.++.. +-......+++|++.+.+.
T Consensus 355 t~VrWSaAKg~grvt~rlp~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~ 433 (1133)
T KOG1943|consen 355 TVVRWSAAKGLGRVTSRLPPEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDV 433 (1133)
T ss_pred chhhHHHHHHHHHHHccCcHHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhh
Confidence 4689999999999999887533 333333322333222 234455788899888865 2223345678888876543
Q ss_pred -----CCChHHHHHHHHHHHHHHHHhCCCCccc---chHH-HHHHhcCCChHHHHHHHHHHHHHHHHhhCH---------
Q 015150 77 -----DKSWRVRYMVANQLYELCEAVGPEPTRS---DVVP-AYVRLLRDNEAEVRIAAAGKVTKICRILNP--------- 138 (412)
Q Consensus 77 -----d~~~~vR~~~~~~l~~l~~~~~~~~~~~---~l~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------- 138 (412)
.....||-++|-.+=.+++...+....+ .+.+ .+...+-|++-.+|.+|..++....-..++
T Consensus 434 ~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis 513 (1133)
T KOG1943|consen 434 RRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLIS 513 (1133)
T ss_pred hhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhh
Confidence 2346799999999888888766554333 2333 334467899999999999888654221111
Q ss_pred ---------------------HHHHHhhhhhHHHhcc----CCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhc
Q 015150 139 ---------------------ELAIQHILPCVKELSS----DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK 193 (412)
Q Consensus 139 ---------------------~~~~~~~~~~l~~~~~----d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 193 (412)
..+....-|.+.+++. +=+..+|..++.++..+...-.+. .....+|.+.....
T Consensus 514 ~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~-~a~~~L~~lld~~l 592 (1133)
T KOG1943|consen 514 TIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKY-LADYVLPPLLDSTL 592 (1133)
T ss_pred hcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHh-hcccchhhhhhhhc
Confidence 0122223344444443 346688999999999866433322 22233444444443
Q ss_pred ccChHHHHHHHHHHHHHHHhhc----------hh----------------------------------------------
Q 015150 194 DEFPDVRLNIISKLDQVNQVIG----------ID---------------------------------------------- 217 (412)
Q Consensus 194 d~~~~vr~~~~~~l~~i~~~~~----------~~---------------------------------------------- 217 (412)
..+...|.....+.+.+...+. ..
T Consensus 593 s~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~ 672 (1133)
T KOG1943|consen 593 SKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQD 672 (1133)
T ss_pred CCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHH
Confidence 4455666555544444322110 00
Q ss_pred hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC--hhhHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHhCh
Q 015150 218 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGP 294 (412)
Q Consensus 218 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~ 294 (412)
.........+.+...+++ .+|.++.+.++.++...- .+.....++.-++..+.++ +..+|.....+++.+-..+=.
T Consensus 673 ~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~ 751 (1133)
T KOG1943|consen 673 FVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIH 751 (1133)
T ss_pred HHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhc
Confidence 000001111112223334 567777777777665441 1111222444445555555 566777666666554422111
Q ss_pred hhhhhhhHHHHHhhhcCC-chHHHHHHHHHHHHhccccch-------hHHHHhhHHHHHhhcCCC----CchHHHHHHHH
Q 015150 295 DWAMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGS-------EITCSQLLPVVINASKDR----VPNIKFNVAKV 362 (412)
Q Consensus 295 ~~~~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~-------~~~~~~il~~l~~~l~d~----~~~vR~~~~~~ 362 (412)
-...+.+...++...... ...-|...+.++..++...+. +.+.+.++..+-.+..|. ...||.+++++
T Consensus 752 ~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~a 831 (1133)
T KOG1943|consen 752 RHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKA 831 (1133)
T ss_pred hHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHH
Confidence 111233444444433332 456788888888888766652 245556666666665554 36699999999
Q ss_pred HHHHhhhhc-hHHHH----hhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 363 LQSLIPIVD-QSVVE----KSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 363 l~~l~~~~~-~~~~~----~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
+..+..... ++.+. ..++-.+.+..-|.....|.+++.++..+.-
T Consensus 832 l~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~ 881 (1133)
T KOG1943|consen 832 LSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVV 881 (1133)
T ss_pred HHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceee
Confidence 999876554 22222 2233333344455666678888888877653
No 64
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.10 E-value=5.2e-06 Score=82.23 Aligned_cols=377 Identities=14% Similarity=0.114 Sum_probs=215.6
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCccc
Q 015150 25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS 104 (412)
Q Consensus 25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~ 104 (412)
....+..+...+..+...+|.-|++++..++.--+.--..+.+...+..-+.|.+..||.++++.+|..+-..+ ....
T Consensus 814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~--e~~~ 891 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP--ELIF 891 (1692)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH--HHHH
Confidence 44466667777888889999999999999997644444556677888888999999999999999998775322 2224
Q ss_pred chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcC--cccC---hhH
Q 015150 105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMA--PILG---KDA 179 (412)
Q Consensus 105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~--~~~~---~~~ 179 (412)
+....+.+.+.|+.-.||+.+++.+..++...+.-.....+.--+..-.+|.+..+...+.+.+..+= +.-+ ...
T Consensus 892 qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~ 971 (1692)
T KOG1020|consen 892 QYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPA 971 (1692)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHH
Confidence 56677778889999999999999999999877665444445555555667877778888877776541 1000 000
Q ss_pred H---------------------HHhhHHHHHHh-h----c-----------------------------------ccChH
Q 015150 180 T---------------------IEQLLPIFLSL-L----K-----------------------------------DEFPD 198 (412)
Q Consensus 180 ~---------------------~~~l~~~l~~~-l----~-----------------------------------d~~~~ 198 (412)
. .++++-.+.+. . . ++..+
T Consensus 972 ~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~ 1051 (1692)
T KOG1020|consen 972 KARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESE 1051 (1692)
T ss_pred HHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccch
Confidence 0 01111111110 0 0 00011
Q ss_pred HHH-HHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCC-----CchHHHHHHHHhhHHHhhhC--hhhHHHHHHHHHHHHh
Q 015150 199 VRL-NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-----HWRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQWL 270 (412)
Q Consensus 199 vr~-~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~-----~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l 270 (412)
+|. +.+..|..++.. .+..+.+...-.+..++... ..++-+.++..+..+.+... ++.+...+-..+++++
T Consensus 1052 ~~~~~~lstL~~Fski-rP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i 1130 (1692)
T KOG1020|consen 1052 VRLLAYLSTLFVFSKI-RPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRI 1130 (1692)
T ss_pred hHHHHHHHHHHHHHhc-CchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 111 111111111111 00001001111222222222 23344445555555444432 3344555666666666
Q ss_pred cCchhHHHHHHHHHHHHHHHHhChhh-hhhhhHHHHHh-------hhcCC----chHHHHHHHHHHHHhccccc------
Q 015150 271 KDKVYSIRDAAANNVKRLAEEFGPDW-AMQHIVPQVLE-------MINNP----HYLYRMTILQAISLLAPVMG------ 332 (412)
Q Consensus 271 ~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~l~~l~~-------~~~~~----~~~~r~~~~~~l~~l~~~~~------ 332 (412)
-.-+...-..+..+++.++......+ ....++..+.+ ...+. +...-...+.++|.++..+.
T Consensus 1131 ~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~ 1210 (1692)
T KOG1020|consen 1131 VKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSN 1210 (1692)
T ss_pred HhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccC
Confidence 55566666778888888887643221 11222222222 21122 23445566777777765332
Q ss_pred --h------hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccH--HHHHHHHH
Q 015150 333 --S------EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDV--RFFATQAL 402 (412)
Q Consensus 333 --~------~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~v--r~~a~~al 402 (412)
+ +...++++..+.-+.++..-.+|..++..||.++-.-..-.+...+...+...+.|...++ +..+.+.+
T Consensus 1211 ~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~ 1290 (1692)
T KOG1020|consen 1211 DGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNL 1290 (1692)
T ss_pred CCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 1 1345666776766777888999999999999997554443445566666666555544443 34444444
Q ss_pred HH
Q 015150 403 QS 404 (412)
Q Consensus 403 ~~ 404 (412)
..
T Consensus 1291 ~~ 1292 (1692)
T KOG1020|consen 1291 EL 1292 (1692)
T ss_pred HH
Confidence 33
No 65
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.5e-06 Score=79.58 Aligned_cols=217 Identities=15% Similarity=0.130 Sum_probs=152.0
Q ss_pred hhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHH
Q 015150 63 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI 142 (412)
Q Consensus 63 ~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 142 (412)
...++-+-+..++++.-+-+|+.++-.+-++....++.. ...+|.+.+-+.|+++.|..+|+..+..+++.-+....
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL- 217 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL- 217 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-
Confidence 556677888899999999999999999888876544332 34688899999999999999999999999987655422
Q ss_pred HhhhhhHHHhcc-CCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccCh-HHHHHHHHHHHHHHHh-----h-
Q 015150 143 QHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQV-----I- 214 (412)
Q Consensus 143 ~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~~~~~l~~i~~~-----~- 214 (412)
.+-|.+.+++. .+|.++-......|+.+...=+. .-..++|.+.+++..... .+-. .++..+... .
T Consensus 218 -~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR--LgKKLieplt~li~sT~AmSLlY---ECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 218 -QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR--LGKKLIEPITELMESTVAMSLLY---ECVNTVVAVSMSSGMS 291 (877)
T ss_pred -cccHHHHHHHhccCCCeehHHHHHHHhhccccCch--hhhhhhhHHHHHHHhhHHHHHHH---HHHHHheeehhccCCC
Confidence 26688888763 34445566677778777643111 124677888887765432 1111 122222211 1
Q ss_pred chhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 015150 215 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 290 (412)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 290 (412)
+.....+-.+.-+..+++|.++..|+..+-+++.+++.-... ...-..+++++|.|.+..+|..|+..+-.++.
T Consensus 292 d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~--Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 292 DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA--VQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH--HHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 112233455667778899999999999999999888765432 23356678999999999999999988877664
No 66
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=5.2e-08 Score=89.87 Aligned_cols=361 Identities=14% Similarity=0.095 Sum_probs=211.8
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 015150 26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD 105 (412)
Q Consensus 26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 105 (412)
..+.|-+.+...-.+-..++..-.=+..-+...+.. .-..++.+.+-+.|++|.+|..|++.++.+. .+....+
T Consensus 48 SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~--a~~avnt~~kD~~d~np~iR~lAlrtm~~l~----v~~i~ey 121 (734)
T KOG1061|consen 48 SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL--AILAVNTFLKDCEDPNPLIRALALRTMGCLR----VDKITEY 121 (734)
T ss_pred HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH--HHhhhhhhhccCCCCCHHHHHHHhhceeeEe----ehHHHHH
Confidence 446666666666666667776665555666554432 3457788899999999999999999887653 3345678
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh---hHHHH
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIE 182 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~ 182 (412)
+...+.++++|.++.||..+..+..++...-.+-.....+++.+..++.|+++.|-..+..++..+.+.-.. -....
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~ 201 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNP 201 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccH
Confidence 899999999999999999999999998766555555667889999999999999999999999988654321 11111
Q ss_pred hhHHHHHHhhcccChHHHHH-------------------------------------HHHHHHHHHHhhch--hhHHhhH
Q 015150 183 QLLPIFLSLLKDEFPDVRLN-------------------------------------IISKLDQVNQVIGI--DLLSQSL 223 (412)
Q Consensus 183 ~l~~~l~~~l~d~~~~vr~~-------------------------------------~~~~l~~i~~~~~~--~~~~~~~ 223 (412)
.++..+...+.+....-|.. +.+.+-........ +.+...+
T Consensus 202 ~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~ 281 (734)
T KOG1061|consen 202 QLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKV 281 (734)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222222222211111111 11111111111111 0111111
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh--------------------------------hHHHHHHHHHHHHhc
Q 015150 224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--------------------------------FFDDKLGALCMQWLK 271 (412)
Q Consensus 224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--------------------------------~~~~~l~~~l~~~l~ 271 (412)
-|.+..++.. .+.+...++..+..+......- ...+++++-+...-.
T Consensus 282 ~~pl~tlls~-~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYat 360 (734)
T KOG1061|consen 282 APPLVTLLSS-ESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYAT 360 (734)
T ss_pred cccceeeecc-cchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhh
Confidence 2222222222 2355665655555554433210 001122333333334
Q ss_pred CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCC-
Q 015150 272 DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD- 350 (412)
Q Consensus 272 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d- 350 (412)
+-+.+.-..++++++.+....... +..++.++++++-+...+-+.++..+..+...++.. .+.+.+.+...+..
T Consensus 361 evD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~--~~~vv~~l~~~~~sl 435 (734)
T KOG1061|consen 361 EVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK--YESVVAILCENLDSL 435 (734)
T ss_pred hhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc--hhhhhhhhccccccc
Confidence 455565566777777777655433 557777777777443334444445555555444443 24555555544433
Q ss_pred CCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHH
Q 015150 351 RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401 (412)
Q Consensus 351 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~a 401 (412)
.+|+.|.+.++.+|..+..+.+. .+++..+..-..|....|+.....|
T Consensus 436 ~epeak~amiWilg~y~~~i~~a---~elL~~f~en~~dE~~~Vql~LLta 483 (734)
T KOG1061|consen 436 QEPEAKAALIWILGEYAERIENA---LELLESFLENFKDETAEVQLELLTA 483 (734)
T ss_pred CChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhcccchHHHHHHHHHH
Confidence 36788999999999988877663 3455566665666666666554444
No 67
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=99.05 E-value=3.1e-06 Score=79.93 Aligned_cols=140 Identities=20% Similarity=0.155 Sum_probs=70.7
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 015150 26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD 105 (412)
Q Consensus 26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 105 (412)
..+.|-+.+.....+.++++..-.=+...++..+.+ --...+.+.+-++|+++.+|..+++.++.+-. .....+
T Consensus 54 ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~----~el~~~ 127 (757)
T COG5096 54 SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV----KELLGN 127 (757)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh----HHHHHH
Confidence 334444333333445555555444444444444321 22344555555666666666666666554322 233455
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHh-hhhhHHHhccCCcHHHHHHHHHHHHhcC
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH-ILPCVKELSSDSSQHVRSALATVIMGMA 172 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~~~~d~~~~vr~~~~~~l~~l~ 172 (412)
+++.+.++++|+++.||+.|+.++.++-+. +++.+.+. ....+..++.|++|.|...|..++..+-
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 566666666666666666666666655442 22222222 4444455555666666666655555544
No 68
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=99.05 E-value=6.3e-06 Score=75.20 Aligned_cols=352 Identities=16% Similarity=0.155 Sum_probs=207.7
Q ss_pred HHHHHhccCCch---HHHHHHHHhHHHHhhccCc-hhhhhhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHHhCCCC---
Q 015150 30 SIFEELTQDDQD---SVRLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP--- 101 (412)
Q Consensus 30 ~~l~~l~~~~~~---~~r~~a~~~l~~i~~~~~~-~~~~~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~~~--- 101 (412)
|.+...+.|.++ ........++..++..-.- +.....++..+...++ ..+...-...+.++..+.+....+.
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~ 81 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFE 81 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccc
Confidence 344444554443 3445556666666644211 1122233333333332 2356677777888888776654333
Q ss_pred ----ccc-chHHHHHHhcC-----CC--hHHHHHHHHHHHHHHHHhhCHHHH---HHhhhhhHHH-----hcc-CCc---
Q 015150 102 ----TRS-DVVPAYVRLLR-----DN--EAEVRIAAAGKVTKICRILNPELA---IQHILPCVKE-----LSS-DSS--- 157 (412)
Q Consensus 102 ----~~~-~l~~~l~~~l~-----d~--~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~~l~~-----~~~-d~~--- 157 (412)
+.+ .++|.+.+... +. ++.+-..+...+..+...++.+.. .+.+...+.. -+. +.+
T Consensus 82 ~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~ 161 (415)
T PF12460_consen 82 DNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTIS 161 (415)
T ss_pred hHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccc
Confidence 111 26666666542 22 256666677777777777776633 3333333330 000 111
Q ss_pred ---HHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhh-cccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHh-c
Q 015150 158 ---QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-E 232 (412)
Q Consensus 158 ---~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~-~ 232 (412)
...-......+..+-....-. ....++..+..+. +.+++..|..+.+.++.+......+...+.++..+.... .
T Consensus 162 ~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~ 240 (415)
T PF12460_consen 162 EQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISS 240 (415)
T ss_pred cccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcc
Confidence 111111222333332222111 1233555555553 344589999999999999887655544455555555444 4
Q ss_pred CCCchHHHHHHHHhhHHHhhh---ChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---------------
Q 015150 233 DRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--------------- 294 (412)
Q Consensus 233 d~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------------- 294 (412)
......|...+..+.-+.+.+ |.. ....+...+++++.| +++...|++.++.+....+.
T Consensus 241 ~~~~~~~~~~~~~~~Wi~KaLv~R~~~-~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLyk 317 (415)
T PF12460_consen 241 SEDSELRPQALEILIWITKALVMRGHP-LATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYK 317 (415)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHh
Confidence 455566666666665555543 222 234467777888888 77888899999888764211
Q ss_pred hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc
Q 015150 295 DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 371 (412)
Q Consensus 295 ~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 371 (412)
..+...++|.+.+.++..+...|...+.++..+....+.. ...+.++|.+++.+.-+++.+|.+++.++..+...-.
T Consensus 318 QR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 318 QRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 1233568889998888877678999999999999988876 3567899999999998999999999999998876542
Q ss_pred hH--HHHhhHHHHHHh
Q 015150 372 QS--VVEKSIRPCLVE 385 (412)
Q Consensus 372 ~~--~~~~~i~~~l~~ 385 (412)
+- .+.+.++|.+.+
T Consensus 398 ~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 398 ELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 21 233455555544
No 69
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.03 E-value=1.9e-07 Score=83.26 Aligned_cols=293 Identities=12% Similarity=0.086 Sum_probs=183.7
Q ss_pred hhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCc
Q 015150 23 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 102 (412)
Q Consensus 23 ~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~ 102 (412)
++...+-|++..-++|+-+.+-..+++.+..++...-..+.....+..+..++..+....|.++++.|..++...+....
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee
Confidence 45666778877788888788888888888887766533335566677777888888888999999999999876544332
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHH
Q 015150 103 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 182 (412)
Q Consensus 103 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 182 (412)
..-+-+..+++|.+-.+-. .++..+.+.-.++. ...++..+...+.|-+...+..++.++..++-.++.+. .
T Consensus 340 --vcN~evEsLIsd~Nr~Ist---yAITtLLKTGt~e~-idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~ 411 (898)
T COG5240 340 --VCNKEVESLISDENRTIST---YAITTLLKTGTEET-IDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--L 411 (898)
T ss_pred --ecChhHHHHhhcccccchH---HHHHHHHHcCchhh-HHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--H
Confidence 2235567788888755544 44444444443442 23455555555555555555556666666655554332 2
Q ss_pred hhHHHHHHhhc-ccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHH
Q 015150 183 QLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK 261 (412)
Q Consensus 183 ~l~~~l~~~l~-d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 261 (412)
..+..+.+.+. ...-+.+..++.++..+.++.+.. .+..+..+..+.+|..+ ...++..++.+.+-.+.......
T Consensus 412 s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s--kEraLe~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P~~ 487 (898)
T COG5240 412 SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS--KERALEVLCTFIEDCEY--HQITVRILGILGREGPRAKTPGK 487 (898)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCCcch
Confidence 33444444433 445677788888888887775422 24566777777776432 22233344444443322211222
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHh
Q 015150 262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLL 327 (412)
Q Consensus 262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l 327 (412)
.+-.+.+.+-=++.-||.+|..+|.++.-+.......+.+...+...++|.+..+|..|...+..+
T Consensus 488 yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 488 YVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 333344444445677899999999888876665555667777888888888888888887777665
No 70
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=2.1e-05 Score=76.49 Aligned_cols=349 Identities=12% Similarity=0.159 Sum_probs=221.6
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc-----------hhhhhhhHHHHHhhccC------CChHHHHHHH
Q 015150 25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-----------QDCVAHILPVIVNFSQD------KSWRVRYMVA 87 (412)
Q Consensus 25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~-----------~~~~~~l~~~l~~l~~d------~~~~vR~~~~ 87 (412)
...+-+.+...+... ++.|...|..|..+.+...+ .......+|.+.+.-.. +....|...+
T Consensus 516 F~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L 594 (1176)
T KOG1248|consen 516 FTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVL 594 (1176)
T ss_pred HHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHH
Confidence 344555554444443 37888888888888877521 11233356665554332 2234455444
Q ss_pred HHHH-HHHHHhCCCCcccchHHHHHHhcCCChHHHHHHH----HHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHH
Q 015150 88 NQLY-ELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA----AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS 162 (412)
Q Consensus 88 ~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a----~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~ 162 (412)
..+. .+....+.+ ....+...+.+...+.+..++..- +..+..++++.++..+.. +....-...+..+..++.
T Consensus 595 ~~i~~~~~~~t~~d-v~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~-l~~v~~~~e~~~~~~vQk 672 (1176)
T KOG1248|consen 595 EIIRVDYFTVTPTD-VVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSK-LFTVDPEFENSSSTKVQK 672 (1176)
T ss_pred HHHHHHHhhcccHH-HHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHH-HHHhhHHhhccccHHHHH
Confidence 4443 222211111 123455555566666655544333 333444455555554433 333333444556889999
Q ss_pred HHHHHHHhcCcccChhHHH----HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhh--HHhhHHHHHHHHhcCCCc
Q 015150 163 ALATVIMGMAPILGKDATI----EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHW 236 (412)
Q Consensus 163 ~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~~~~~l~~~~~d~~~ 236 (412)
-+...+..+......+... +.+...+.+.+++.....|....++|..+.+..+.+. +....+|-++-..++.+.
T Consensus 673 K~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~ 752 (1176)
T KOG1248|consen 673 KAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNV 752 (1176)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccH
Confidence 9999999888763222222 3455555556666778899999999999988877432 334555555555688888
Q ss_pred hHHHHHHHHhhHHH--hhh---Chhh---HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---hhhhhhhhHHHH
Q 015150 237 RVRLAIIEYIPLLA--SQL---GVGF---FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQV 305 (412)
Q Consensus 237 ~vr~~~~~~l~~l~--~~~---~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~l~~l 305 (412)
..|+.+..+|..++ ... |.+. ..+.+++.+...+-.+...++...+-++..++..++ .+.....++..+
T Consensus 753 ~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V 832 (1176)
T KOG1248|consen 753 KARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMV 832 (1176)
T ss_pred HHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 88998888888777 222 3222 334455555555544445555444556666655443 233456677788
Q ss_pred HhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHH
Q 015150 306 LEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 376 (412)
Q Consensus 306 ~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~ 376 (412)
.-++...+..++.+|+..+..+...++.. ++.+.++|.++.+.+|..-.+|..+-..+..+...+|.+...
T Consensus 833 ~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 833 CLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 88888999999999999999999988876 567889999999999999999999999999999999987543
No 71
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=3.4e-06 Score=77.15 Aligned_cols=114 Identities=15% Similarity=0.096 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcc
Q 015150 24 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR 103 (412)
Q Consensus 24 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~ 103 (412)
+...+.+.+.+=+.+.++..-..|+.++++++.+--.+.+..++-.++.. .+...-||+.++-+|-.+.+..++-...
T Consensus 108 l~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS--~~~~~~vkqkaALclL~L~r~spDl~~~ 185 (938)
T KOG1077|consen 108 LMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVS--GSSMDYVKQKAALCLLRLFRKSPDLVNP 185 (938)
T ss_pred HHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhC--CcchHHHHHHHHHHHHHHHhcCccccCh
Confidence 44445555666667777877888999999888663333333334333332 2345789999999999998876655555
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH
Q 015150 104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE 139 (412)
Q Consensus 104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 139 (412)
.+....+..+++|.+..|-.++...+..+++..+++
T Consensus 186 ~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~ 221 (938)
T KOG1077|consen 186 GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES 221 (938)
T ss_pred hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH
Confidence 677888999999999999999999998888877665
No 72
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=4.3e-05 Score=74.41 Aligned_cols=345 Identities=13% Similarity=0.122 Sum_probs=224.6
Q ss_pred hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCC-----------CcccchHHHHHHhcCCC------hHHHHHHHH
Q 015150 64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-----------PTRSDVVPAYVRLLRDN------EAEVRIAAA 126 (412)
Q Consensus 64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~-----------~~~~~l~~~l~~~l~d~------~~~vr~~a~ 126 (412)
...+.|.+...+... +..|...|.+|..+.+...+. .+....+|.++.....+ ....|...+
T Consensus 516 F~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L 594 (1176)
T KOG1248|consen 516 FTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVL 594 (1176)
T ss_pred HHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHH
Confidence 455667666655443 489999999999998864210 12235677777765432 234455555
Q ss_pred HHHH-HHHHhhCHHHHHHhhhhhHHHhccCCcHHHH----HHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHH
Q 015150 127 GKVT-KICRILNPELAIQHILPCVKELSSDSSQHVR----SALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRL 201 (412)
Q Consensus 127 ~~l~-~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr----~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~ 201 (412)
..+. ...+..+. .....+...+..+..+.+..++ ......+..++.......+. .+....-...+..+..+|+
T Consensus 595 ~~i~~~~~~~t~~-dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs-~l~~v~~~~e~~~~~~vQk 672 (1176)
T KOG1248|consen 595 EIIRVDYFTVTPT-DVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVS-KLFTVDPEFENSSSTKVQK 672 (1176)
T ss_pred HHHHHHHhhcccH-HHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHH-HHHHhhHHhhccccHHHHH
Confidence 4444 22222222 2333444555555555544343 33344444444444433333 2222222333444788999
Q ss_pred HHHHHHHHHHHhhch----hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchh
Q 015150 202 NIISKLDQVNQVIGI----DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVY 275 (412)
Q Consensus 202 ~~~~~l~~i~~~~~~----~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~ 275 (412)
.+.+-|..+.+.... +.....+...+.+-.++...-.|...+.++..+.+..+.+. +....+|-++-.+++.+.
T Consensus 673 K~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~ 752 (1176)
T KOG1248|consen 673 KAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNV 752 (1176)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccH
Confidence 999999988876221 22235566667777777788889999999999999888433 234444444444589999
Q ss_pred HHHHHHHHHHHHHH--HHh---Chhh---hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhcccc---chhHHHHhhHHHH
Q 015150 276 SIRDAAANNVKRLA--EEF---GPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM---GSEITCSQLLPVV 344 (412)
Q Consensus 276 ~vr~~a~~~l~~l~--~~~---~~~~---~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~---~~~~~~~~il~~l 344 (412)
.-|+.|+.+|..+. ... |.+. ..+.+++.+...+......++.+.+-++..+...+ ..+.+...++..+
T Consensus 753 ~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V 832 (1176)
T KOG1248|consen 753 KARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMV 832 (1176)
T ss_pred HHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999988887 322 3222 34566677766655555555555455666554332 2345788899999
Q ss_pred HhhcCCCCchHHHHHHHHHHHHhhhhchH---HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150 345 INASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 345 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 411 (412)
..++..+.+.++.+|+..+..+...+... .+.+.++|.+..++.|....+|..+..-+..+++..|-
T Consensus 833 ~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 833 CLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999999999999888775 45577999999999999999999999999999988763
No 73
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2.4e-06 Score=78.71 Aligned_cols=357 Identities=13% Similarity=0.119 Sum_probs=201.8
Q ss_pred HHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHH
Q 015150 30 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPA 109 (412)
Q Consensus 30 ~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~ 109 (412)
+.+.+=++++|+-+|...++.+..+ .+.+....+.|.+.+.++++..-||+.|.-++..|...+. ..+ ++.-..
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~-~L~-pDapeL 175 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-HLI-PDAPEL 175 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-hhc-CChHHH
Confidence 3445556777777777666555433 2344667788888888888888888888888888776522 111 222222
Q ss_pred HHH-hcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHH
Q 015150 110 YVR-LLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 188 (412)
Q Consensus 110 l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l 188 (412)
+.. +..+.++..+..|+-.|.. ..++...+++...+.+ +.+-+......+++.+...+..- ..-....+..+
T Consensus 176 i~~fL~~e~DpsCkRNAFi~L~~----~D~ErAl~Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~--p~~~~~~i~~i 248 (948)
T KOG1058|consen 176 IESFLLTEQDPSCKRNAFLMLFT----TDPERALNYLLSNIDQ-IPSFNDSLQLVIVELIRKVCLAN--PAEKARYIRCI 248 (948)
T ss_pred HHHHHHhccCchhHHHHHHHHHh----cCHHHHHHHHHhhHhh-ccCccHHHHHHHHHHHHHHHhcC--HHHhhHHHHHH
Confidence 222 3345667777777666642 3333333222222221 12223344444555555544311 11123556677
Q ss_pred HHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHH-hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHH
Q 015150 189 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 267 (412)
Q Consensus 189 ~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 267 (412)
..++..+++.|+-.++..+..+... +..+ +..-..+.++ .+.++-.++.....-+..+.. +.+...+.+.--++
T Consensus 249 ~~lL~stssaV~fEaa~tlv~lS~~--p~al-k~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvL 323 (948)
T KOG1058|consen 249 YNLLSSTSSAVIFEAAGTLVTLSND--PTAL-KAAASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVL 323 (948)
T ss_pred HHHHhcCCchhhhhhcceEEEccCC--HHHH-HHHHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHH
Confidence 7777777888887776666555432 2222 2222333333 334555666666666655552 22223344444457
Q ss_pred HHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhh---cCCchHHHHHHHHHHHHhccccchhHHHHhhHHHH
Q 015150 268 QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI---NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV 344 (412)
Q Consensus 268 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l 344 (412)
..|+.++-+||..++...-.+...-..+.....+-..+.+.- .+.+-..|+..++.+..++-.++. +...+.|.+
T Consensus 324 rvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~l 401 (948)
T KOG1058|consen 324 RVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLL 401 (948)
T ss_pred HHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHH
Confidence 788999999999998877777665443333332222333221 234466899999999888876654 577899999
Q ss_pred HhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHh-hcCCCCccHHHHHHHHHHHhHHh
Q 015150 345 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 345 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~-l~~d~~~~vr~~a~~al~~~~~~ 408 (412)
++.+.|.++.--..++..+.+..+.+..- ...++..+.. +-.=...++-..+.+.+|.-++.
T Consensus 402 l~fisD~N~~aas~vl~FvrE~iek~p~L--r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~ 464 (948)
T KOG1058|consen 402 LDFISDSNEAAASDVLMFVREAIEKFPNL--RASIIEKLLETFPQIRSSKICRGALWILGEYCEG 464 (948)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHhCchH--HHHHHHHHHHhhhhhcccccchhHHHHHHHHHhh
Confidence 99999998876666666666655544431 1122222222 21224455666666666665543
No 74
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=6.5e-06 Score=75.43 Aligned_cols=253 Identities=11% Similarity=0.120 Sum_probs=129.1
Q ss_pred HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc-ChhHHHHhhHHHHHHhhc-ccChHHHHHHHHHHHHHHHhhchh
Q 015150 140 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL-GKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGID 217 (412)
Q Consensus 140 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~~~~~l~~~l~~~l~-d~~~~vr~~~~~~l~~i~~~~~~~ 217 (412)
.........+-+++++.+..+|.-+.+.+..++..- ..+.+... ...+...++ +.|-.+|..++..|..++..-..
T Consensus 325 ~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Na- 402 (938)
T KOG1077|consen 325 ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA- 402 (938)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhH-
Confidence 344445566666777888888888888888776542 12222222 455666666 67788888888888888765333
Q ss_pred hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh
Q 015150 218 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297 (412)
Q Consensus 218 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 297 (412)
+.++.-+++++...++.+|...+--+.-+++.+..+. ...+.+++++++-....|-.....-+-.++- ..+.+
T Consensus 403 ---k~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy--~WyVdviLqLiriagd~vsdeVW~RvvQiVv--Nnedl 475 (938)
T KOG1077|consen 403 ---KQIVAELLQYLETADYSIREEIVLKVAILAEKYATDY--SWYVDVILQLIRIAGDYVSDEVWYRVVQIVV--NNEDL 475 (938)
T ss_pred ---HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCc--chhHHHHHHHHHHhcccccHHHHHHhheeEe--cchhh
Confidence 3455666667777888888888777777777664432 2233344444321101111111111111110 11111
Q ss_pred hhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhccccchhH--HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH
Q 015150 298 MQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 373 (412)
Q Consensus 298 ~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 373 (412)
..-.-..+.+.+..+. ...-.++...+|.+...+..++ --...+..+-+-+.-..+..|.-.+.++-++...+ |
T Consensus 476 q~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~-P- 553 (938)
T KOG1077|consen 476 QGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLF-P- 553 (938)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhC-h-
Confidence 1112222333333221 1111222333444433332211 11122333333344445566666666666666543 2
Q ss_pred HHHhhHHHHHHhhcCCCCccHHHHHHHHHH
Q 015150 374 VVEKSIRPCLVELSEDPDVDVRFFATQALQ 403 (412)
Q Consensus 374 ~~~~~i~~~l~~l~~d~~~~vr~~a~~al~ 403 (412)
.....+...+....+-.|.++++.|.+=+.
T Consensus 554 Ei~~~v~~vFq~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 554 EIKSNVQKVFQLYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred hhhHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 233455555666566678888888776554
No 75
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.95 E-value=7.6e-06 Score=77.35 Aligned_cols=175 Identities=17% Similarity=0.178 Sum_probs=131.4
Q ss_pred HHHHHHHh-ccCCchHHHHHHHH-hHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 015150 28 IMSIFEEL-TQDDQDSVRLLAVE-GCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD 105 (412)
Q Consensus 28 l~~~l~~l-~~~~~~~~r~~a~~-~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 105 (412)
.+..+... +.+.++..|..|++ ++..+... +..+.++|-+.+.....|.++++.+=-.+-.+++.-+.+. --
T Consensus 19 ~~~~~~sg~l~s~n~~~kidAmK~iIa~M~~G----~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lL 92 (757)
T COG5096 19 SVAALSSGRLESSNDYKKIDAMKKIIAQMSLG----EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LL 92 (757)
T ss_pred HHhhhccccccccChHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HH
Confidence 34444444 77777777766554 44444322 2356677777776667889999998888888887544221 13
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHh-h
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ-L 184 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~-l 184 (412)
.++.+.+-++|+++.+|..|+..++.+ +...+...+++.+.+++.|+++.||+.|+-++..+.+ .+++.+.+. +
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~-ld~~l~~~~g~ 167 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR-LDKDLYHELGL 167 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-cCHhhhhcccH
Confidence 577888889999999999999999864 4556677899999999999999999999999999874 444545544 7
Q ss_pred HHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQV 213 (412)
Q Consensus 185 ~~~l~~~l~d~~~~vr~~~~~~l~~i~~~ 213 (412)
...+..++.|++|.|..+|..++..+-+.
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 78888899999999999999999887655
No 76
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.94 E-value=1.2e-08 Score=71.11 Aligned_cols=87 Identities=23% Similarity=0.352 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH--HHhhHHHHHHhhcCCCCc
Q 015150 317 RMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSEDPDV 392 (412)
Q Consensus 317 r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~i~~~l~~l~~d~~~ 392 (412)
|.+++.++..++..++.. .+.+.++|.++..++|+++.||..++++|..+++..+++. +.+++++.|.++..|+|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 667777888887777764 5788899999999999999999999999999988877763 457899999999999999
Q ss_pred cHHHHHHHHHHH
Q 015150 393 DVRFFATQALQS 404 (412)
Q Consensus 393 ~vr~~a~~al~~ 404 (412)
+||..| +.+..
T Consensus 83 ~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 83 NVRSAA-ELLDR 93 (97)
T ss_pred hHHHHH-HHHHH
Confidence 998877 44443
No 77
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.92 E-value=2e-07 Score=85.64 Aligned_cols=239 Identities=17% Similarity=0.292 Sum_probs=180.6
Q ss_pred CcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhc-CC
Q 015150 156 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DR 234 (412)
Q Consensus 156 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~-d~ 234 (412)
.++.-+....+.|..+...++.......++|.+...+.+. ...-...-.+-.|.+..+...+...++|.+....+ ..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence 4555677788888888888888888889999998877542 22222233334445555556666788888888877 55
Q ss_pred CchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhh-cCCc
Q 015150 235 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI-NNPH 313 (412)
Q Consensus 235 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~-~~~~ 313 (412)
..+++.-+++.+..+.+....+.+.+.++|++...++|.+..++..+++.+..+.+.+...+..+.++|.+..+. +..+
T Consensus 363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence 567888888999999999999999999999999999999999999999999999999988888899999998864 4566
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh-c-hHHHHhhHHHHHHhhcCCCC
Q 015150 314 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-D-QSVVEKSIRPCLVELSEDPD 391 (412)
Q Consensus 314 ~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~-~-~~~~~~~i~~~l~~l~~d~~ 391 (412)
..++..++-+++.+++.+......+.++|.+... +..+|.+.....+....+.... + .+...+.++|.+..+...+.
T Consensus 443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 8899999999999998777766777777766554 4455677777777666554332 2 24455678888888766665
Q ss_pred ccHHHH
Q 015150 392 VDVRFF 397 (412)
Q Consensus 392 ~~vr~~ 397 (412)
-.+.+.
T Consensus 522 L~~~Qy 527 (700)
T KOG2137|consen 522 LNGEQY 527 (700)
T ss_pred ccHHHH
Confidence 555444
No 78
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.89 E-value=5.6e-07 Score=72.57 Aligned_cols=220 Identities=19% Similarity=0.227 Sum_probs=137.9
Q ss_pred hhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhccc--ChHHHHHHHHHHHHHHHhhchhhHHhhHH
Q 015150 147 PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLL 224 (412)
Q Consensus 147 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~~~~~l~~i~~~~~~~~~~~~~~ 224 (412)
..+.+...|.+...+...+.++++... ..-+|.+...+.|+ .+.||..+..+|+.++ . +...
T Consensus 39 ~~i~ka~~d~s~llkhe~ay~LgQ~~~--------~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-------~~~~ 102 (289)
T KOG0567|consen 39 KAITKAFIDDSALLKHELAYVLGQMQD--------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-------PESL 102 (289)
T ss_pred HHHHHhcccchhhhccchhhhhhhhcc--------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-------hhhH
Confidence 333444444455555555555655542 35567777777664 5778888888888886 2 3466
Q ss_pred HHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhH--------HHHHHHHHHHHHH-------
Q 015150 225 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYS--------IRDAAANNVKRLA------- 289 (412)
Q Consensus 225 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~--------vr~~a~~~l~~l~------- 289 (412)
+.+.++.+|+...||..+..++..+--.-+.... ....|. .+ .|+.+. +|......-..+.
T Consensus 103 ~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~-~~~~p~-~S--vdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF 178 (289)
T KOG0567|consen 103 EILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI-ANSSPY-IS--VDPAPPANLSSVHELRAELLDETKPLFERYRAMF 178 (289)
T ss_pred HHHHHHhcCCccccchHHHHHHHHHHHhhccccc-cccCcc-cc--CCCCCccccccHHHHHHHHHhcchhHHHHHhhhh
Confidence 7777777788888887766555544321111000 000010 11 232222 1111111000000
Q ss_pred --HHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCC--CchHHHHHHHHHHH
Q 015150 290 --EEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDR--VPNIKFNVAKVLQS 365 (412)
Q Consensus 290 --~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~--~~~vR~~~~~~l~~ 365 (412)
.+.| .+.-+..+.+.+.+++.-.|..+..++|++-. +.-+|.+.+.|.|. ++-||-.++.+||.
T Consensus 179 ~LRn~g----~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGa 246 (289)
T KOG0567|consen 179 YLRNIG----TEEAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGA 246 (289)
T ss_pred HhhccC----cHHHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHh
Confidence 1111 13456677777788888999999999999852 45577788877664 78899999999999
Q ss_pred HhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 366 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 366 l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
++. +..++.|++.++|+++-||..+.-+|...-
T Consensus 247 Ia~--------e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 247 IAD--------EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hcC--------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 986 688999999999999999999999988653
No 79
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=0.0001 Score=70.61 Aligned_cols=397 Identities=15% Similarity=0.126 Sum_probs=225.5
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCch-HHHHHHHHhHHH-HhhccCch-----------hhhhhhH
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD-SVRLLAVEGCGA-LGKLLEPQ-----------DCVAHIL 68 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~~r~~a~~~l~~-i~~~~~~~-----------~~~~~l~ 68 (412)
|.+|++|-..|..+-+.. ..+..++....+|..+ .||++|+-=+.+ +.+++++. +.+..+.
T Consensus 18 ~~~R~~AE~~L~q~~K~p------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~ir 91 (1010)
T KOG1991|consen 18 AKERKAAEQQLNQLEKQP------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIR 91 (1010)
T ss_pred hHHHHHHHHHHHHhhcCC------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHH
Confidence 567777777776655422 2233333334555543 468877655554 44555432 2223344
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH---------H
Q 015150 69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---------E 139 (412)
Q Consensus 69 ~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------~ 139 (412)
.-++..+-....-+|-....++..|...--+ ..|..+++.+..++.+++...-..++.++..+++...- .
T Consensus 92 enIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~ 170 (1010)
T KOG1991|consen 92 ENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLG 170 (1010)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHH
Confidence 4444443333566777777777666543222 45788999999999999999999999999999887541 1
Q ss_pred HHHHhhhhhHH----HhccCCcHH---HHHHHHHHHHhcCc-ccChhHHHH----hhHHHHHHhhcc--------cCh--
Q 015150 140 LAIQHILPCVK----ELSSDSSQH---VRSALATVIMGMAP-ILGKDATIE----QLLPIFLSLLKD--------EFP-- 197 (412)
Q Consensus 140 ~~~~~~~~~l~----~~~~d~~~~---vr~~~~~~l~~l~~-~~~~~~~~~----~l~~~l~~~l~d--------~~~-- 197 (412)
...+..+|.+. .++.+.+.. ....+++.+-.++. .++...... .-+..+...++- .++
T Consensus 171 ~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~ 250 (1010)
T KOG1991|consen 171 EAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPED 250 (1010)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhh
Confidence 33444555554 455555443 33334443333221 122222211 122223333321 122
Q ss_pred -------HHHHHHHHHHHHHHHhhchhh--------H----Hh----hHHHHHHHHh---cCC---CchHHHHHHHHhhH
Q 015150 198 -------DVRLNIISKLDQVNQVIGIDL--------L----SQ----SLLPAIVELA---EDR---HWRVRLAIIEYIPL 248 (412)
Q Consensus 198 -------~vr~~~~~~l~~i~~~~~~~~--------~----~~----~~~~~l~~~~---~d~---~~~vr~~~~~~l~~ 248 (412)
-+++-|+..+.++.+..|... + .+ .++..+.+.+ ... .+++-..++..+
T Consensus 251 R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl-- 328 (1010)
T KOG1991|consen 251 RSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFL-- 328 (1010)
T ss_pred cccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH--
Confidence 355677888888776655221 1 11 1222222221 112 233333333333
Q ss_pred HHhhhChhhHHHHHHHHHHHHh-------------------cCchhHHH-------------HHHHHHHHHHHHHhChhh
Q 015150 249 LASQLGVGFFDDKLGALCMQWL-------------------KDKVYSIR-------------DAAANNVKRLAEEFGPDW 296 (412)
Q Consensus 249 l~~~~~~~~~~~~l~~~l~~~l-------------------~d~~~~vr-------------~~a~~~l~~l~~~~~~~~ 296 (412)
............+.|.+.-.+ +|+..-+| .+|...+-.++.+-|.+.
T Consensus 329 -~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~ 407 (1010)
T KOG1991|consen 329 -EQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKET 407 (1010)
T ss_pred -HHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhh
Confidence 333333333333333322221 24444454 356666777777776664
Q ss_pred hhhhhHHHHHhhhc--------CCchHHHHHHHHHHHHhccccchh-H----HHHhhHHHHHhhcCCCCchHHHHHHHHH
Q 015150 297 AMQHIVPQVLEMIN--------NPHYLYRMTILQAISLLAPVMGSE-I----TCSQLLPVVINASKDRVPNIKFNVAKVL 363 (412)
Q Consensus 297 ~~~~~l~~l~~~~~--------~~~~~~r~~~~~~l~~l~~~~~~~-~----~~~~il~~l~~~l~d~~~~vR~~~~~~l 363 (412)
+ ..+++.+...++ ..+++-+..|++.++.++..+.++ . +..-+.+.+...++++.--.|..+++++
T Consensus 408 l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl 486 (1010)
T KOG1991|consen 408 L-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVL 486 (1010)
T ss_pred h-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHH
Confidence 4 335565555554 235788899999999998766543 1 2233555666667888888999999999
Q ss_pred HHHh-hhhchHHHHhhHHHHHHhhc-CCCCccHHHHHHHHHHHhHHhh
Q 015150 364 QSLI-PIVDQSVVEKSIRPCLVELS-EDPDVDVRFFATQALQSKDQVM 409 (412)
Q Consensus 364 ~~l~-~~~~~~~~~~~i~~~l~~l~-~d~~~~vr~~a~~al~~~~~~~ 409 (412)
+.++ -.+.+.......+.....++ +|++--||.-|+-|+..+...-
T Consensus 487 ~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~ 534 (1010)
T KOG1991|consen 487 SQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQ 534 (1010)
T ss_pred HHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcc
Confidence 9998 55666666677788777755 4999999999999999987653
No 80
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.86 E-value=1.8e-08 Score=70.10 Aligned_cols=83 Identities=27% Similarity=0.369 Sum_probs=62.6
Q ss_pred HHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCCh
Q 015150 43 VRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNE 118 (412)
Q Consensus 43 ~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~ 118 (412)
.|..++.++..++..++. ..+.+.++|.++..+.|++++||..++++|.++++..+.+. ...++++.+.+++.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 367777777777777665 34566788888888888888888888888888887766544 34567777788888888
Q ss_pred HHHHHHH
Q 015150 119 AEVRIAA 125 (412)
Q Consensus 119 ~~vr~~a 125 (412)
+.||.+|
T Consensus 82 ~~Vr~~a 88 (97)
T PF12755_consen 82 ENVRSAA 88 (97)
T ss_pred hhHHHHH
Confidence 8888877
No 81
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.83 E-value=2.6e-08 Score=69.51 Aligned_cols=86 Identities=28% Similarity=0.409 Sum_probs=65.9
Q ss_pred HHHHHhhh-cCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHH
Q 015150 302 VPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIR 380 (412)
Q Consensus 302 l~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~ 380 (412)
+|.+.+.+ +++++.+|..++.+++.+. .+..+|.+...++|+++.||..++.+|+.+.. +..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~ 64 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAI 64 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 35667766 7888999999999888543 34678888888899999999999999997742 4577
Q ss_pred HHHHhhcCC-CCccHHHHHHHHHH
Q 015150 381 PCLVELSED-PDVDVRFFATQALQ 403 (412)
Q Consensus 381 ~~l~~l~~d-~~~~vr~~a~~al~ 403 (412)
+.|.+++.| ++..||..|..+|+
T Consensus 65 ~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHhhcC
Confidence 777775544 55667888888875
No 82
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=3.5e-05 Score=71.38 Aligned_cols=360 Identities=13% Similarity=0.098 Sum_probs=199.9
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHH---HHhhccCCChHHHHHHHHHHHHHHHHhCCCC
Q 015150 25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPV---IVNFSQDKSWRVRYMVANQLYELCEAVGPEP 101 (412)
Q Consensus 25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~---l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~ 101 (412)
-+.++.++.-.+-+.+-..++.-..-+.-+-+.-++....++++-. +.+-+++|+.-+|-..++.|.++-+ ..
T Consensus 55 p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE----~E 130 (948)
T KOG1058|consen 55 PSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKE----PE 130 (948)
T ss_pred hHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCc----HH
Confidence 3344444444555555555543322222222222223444443333 3345677888888888887766432 23
Q ss_pred cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHH----H-hccCCcHHHHHHHHHHHHhcCcccC
Q 015150 102 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVK----E-LSSDSSQHVRSALATVIMGMAPILG 176 (412)
Q Consensus 102 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~----~-~~~d~~~~vr~~~~~~l~~l~~~~~ 176 (412)
....++|.+..+++.....||+.|+-++..+-+.. .+++|-.- + +..+.++..++.|.-.+....
T Consensus 131 Llepl~p~IracleHrhsYVRrNAilaifsIyk~~------~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D---- 200 (948)
T KOG1058|consen 131 LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF------EHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTD---- 200 (948)
T ss_pred HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh------hhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcC----
Confidence 34567888888899999999999988888776642 12222222 2 234566666666655554433
Q ss_pred hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh
Q 015150 177 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 256 (412)
Q Consensus 177 ~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 256 (412)
++...+++...+.+. .+=++..+...+..+...+..-+ . .....+..+..++...++.|+..++..+..++..- .
T Consensus 201 ~ErAl~Yl~~~idqi-~~~~~~LqlViVE~Irkv~~~~p-~-~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p--~ 275 (948)
T KOG1058|consen 201 PERALNYLLSNIDQI-PSFNDSLQLVIVELIRKVCLANP-A-EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDP--T 275 (948)
T ss_pred HHHHHHHHHhhHhhc-cCccHHHHHHHHHHHHHHHhcCH-H-HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCH--H
Confidence 222222222222111 11124455555555555554211 1 12456777778888888899988887776665431 1
Q ss_pred hHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH
Q 015150 257 FFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI 335 (412)
Q Consensus 257 ~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 335 (412)
.+.. -...++.++. .++..+..-.+.-|..+.. +.+...+.+.-.++..+..++..+|..++...-.+...-..+.
T Consensus 276 alk~-Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNved 352 (948)
T KOG1058|consen 276 ALKA-AASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVED 352 (948)
T ss_pred HHHH-HHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHH
Confidence 1111 2222333332 2233344333334444331 1222345566667788889999999999998888776555443
Q ss_pred HHHhhHHHHHhhc---CCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150 336 TCSQLLPVVINAS---KDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 336 ~~~~il~~l~~~l---~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 408 (412)
+...+...+.+.- +|.+-+.|+..++++...+-.+.. +...++|.+...+.|.++.-...+...+..+.+.
T Consensus 353 iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek 426 (948)
T KOG1058|consen 353 IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISDSNEAAASDVLMFVREAIEK 426 (948)
T ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 3333333333322 344566799999999988776654 4567888888888887776555555555444443
No 83
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.81 E-value=3.3e-05 Score=73.62 Aligned_cols=369 Identities=15% Similarity=0.191 Sum_probs=215.3
Q ss_pred HHHhccCCchHHHHHHHHhHHHHhhccCch--hhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC--CCCcccchH
Q 015150 32 FEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRSDVV 107 (412)
Q Consensus 32 l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l~ 107 (412)
+..++...+.-.| .+...|.+++.....+ -....+++.+.+.++..+..+...++..|.+++-... .......++
T Consensus 255 ~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV 333 (708)
T PF05804_consen 255 LQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIV 333 (708)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence 3344444444344 5567788887765432 2345588888888888889999999999988874322 222345689
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHh--hCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh--HHHHh
Q 015150 108 PAYVRLLRDNEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQ 183 (412)
Q Consensus 108 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~ 183 (412)
|.+.+++..++..++..++..|..++.. .........++|.+..++.|++ .+..+...+..++..-... .....
T Consensus 334 ~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~Td 411 (708)
T PF05804_consen 334 EKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTD 411 (708)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcc
Confidence 9999999999999999999999988643 2233455668899999998754 4556777777776422111 11235
Q ss_pred hHHHHHHhhcc-cChHHHHHHHHHHHHHHHhhc-hhhH-HhhHHHHHHHH-hcCCCchHHHHHHHHhhHHHhhhCh--hh
Q 015150 184 LLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIG-IDLL-SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV--GF 257 (412)
Q Consensus 184 l~~~l~~~l~d-~~~~vr~~~~~~l~~i~~~~~-~~~~-~~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~--~~ 257 (412)
.+|.+.+++-. +++.+...++..+..++..-. .+.+ ...-++.+.+. .+..+ ..+++.+..++.+-|+ ..
T Consensus 412 cIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~~ 487 (708)
T PF05804_consen 412 CIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKEL 487 (708)
T ss_pred hHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHHH
Confidence 67877776443 455555544433333322211 0111 11223333332 22222 1233455555555432 12
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh---h-hhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhcccc
Q 015150 258 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---A-MQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVM 331 (412)
Q Consensus 258 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~-~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~ 331 (412)
+.+.+.++.-..-..++.+....++.+++.+.- .+.+| + ...++|.+.+.+.... ..+...++..+|.++..-
T Consensus 488 f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~-~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~ 566 (708)
T PF05804_consen 488 FVDFIGDLAKIVSSGDSEEFVVECLGILANLTI-PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP 566 (708)
T ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc-CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence 334344433222233344444444444444331 11121 1 2368888888886543 456677777888776321
Q ss_pred chh--HHHHhhHHHHHhhcCCCC--chHHHHHHHHHHHHhhhhch-HH--HHhhHHHHHHhhcCCCCccHHHHHHHHHHH
Q 015150 332 GSE--ITCSQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQ-SV--VEKSIRPCLVELSEDPDVDVRFFATQALQS 404 (412)
Q Consensus 332 ~~~--~~~~~il~~l~~~l~d~~--~~vR~~~~~~l~~l~~~~~~-~~--~~~~i~~~l~~l~~d~~~~vr~~a~~al~~ 404 (412)
... -....+.+.+..+++++. .+.-..++-++..+...-.. +. ....+...+..++.|++.+||+.+-.+|..
T Consensus 567 ~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldi 646 (708)
T PF05804_consen 567 ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDI 646 (708)
T ss_pred HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 111 234567888888876543 45555666666666543111 11 224677888889999999999999999998
Q ss_pred hHHh
Q 015150 405 KDQV 408 (412)
Q Consensus 405 ~~~~ 408 (412)
+++.
T Consensus 647 i~e~ 650 (708)
T PF05804_consen 647 IAEY 650 (708)
T ss_pred HHHh
Confidence 8763
No 84
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.81 E-value=6.6e-07 Score=85.72 Aligned_cols=337 Identities=14% Similarity=0.136 Sum_probs=199.2
Q ss_pred HHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCccc-ch
Q 015150 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS-DV 106 (412)
Q Consensus 28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~-~l 106 (412)
+++....++.++...+|.....++..+... .........+..+..-..+..-..++.++..++...+...... -.
T Consensus 64 l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~----~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~ 139 (815)
T KOG1820|consen 64 LLSFGLKCLDSKRVNIRDTKTQSLLRIGKL----EDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAF 139 (815)
T ss_pred eccchhhhcccccccccCcchhHHHHHHHh----hhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccc
Confidence 344445555555555565555555555211 1223445555556665666666677777777777666443221 12
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHH--------------------------HHHhhhhhHHHhc---cCCc
Q 015150 107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--------------------------AIQHILPCVKELS---SDSS 157 (412)
Q Consensus 107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--------------------------~~~~~~~~l~~~~---~d~~ 157 (412)
++.+-.+. +..||..+...+..+.+..|... +...--+...... .+++
T Consensus 140 ~~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 216 (815)
T KOG1820|consen 140 IKHVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPN 216 (815)
T ss_pred cccCcccc---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCC
Confidence 22222222 34566666666666554443210 0000000001111 1122
Q ss_pred HHHHHHHHH--------HHH---hcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc--h-hhHHhhH
Q 015150 158 QHVRSALAT--------VIM---GMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--I-DLLSQSL 223 (412)
Q Consensus 158 ~~vr~~~~~--------~l~---~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~--~-~~~~~~~ 223 (412)
+.-+...-. ... .-...+........+.+.+..-+.+.++.-|..++..+..++..-+ . ......+
T Consensus 217 ~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll 296 (815)
T KOG1820|consen 217 VKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLL 296 (815)
T ss_pred hhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHH
Confidence 211111100 000 0111234455566777888888888888888888887777665544 2 2233445
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhh
Q 015150 224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI 301 (412)
Q Consensus 224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 301 (412)
...+.....|.+-.+-..++..+..++..++..+ +...+.|.++..+.+....+|..+..++..+..... ...+
T Consensus 297 ~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~ 372 (815)
T KOG1820|consen 297 GILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKM 372 (815)
T ss_pred HHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHH
Confidence 5555666778888888888888888888776543 335567777888888888888888877777776332 4557
Q ss_pred HHHHHhhhcCCchHHHHHHHHHHHHhccccc----hhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHH
Q 015150 302 VPQVLEMINNPHYLYRMTILQAISLLAPVMG----SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV 375 (412)
Q Consensus 302 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~----~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~ 375 (412)
.+.+...+++.++++|..+...+.......+ .......+.|.+....+|....||.++..+++.+...+|.+.+
T Consensus 373 ~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~ 450 (815)
T KOG1820|consen 373 SEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF 450 (815)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7778888888888888887777777765555 2345677888888888888888888888888888888777644
No 85
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=3.8e-05 Score=67.79 Aligned_cols=255 Identities=17% Similarity=0.121 Sum_probs=154.2
Q ss_pred hhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHH--HhhHH-HHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhh
Q 015150 146 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI--EQLLP-IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 222 (412)
Q Consensus 146 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~-~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~ 222 (412)
+-.+..-..|++..+|..++..++.++...+.+... ..++. .+..+.++.+.+|...++++|..+.+......+...
T Consensus 260 ~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~ 339 (533)
T KOG2032|consen 260 LLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESY 339 (533)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhh
Confidence 334444467899999999999999999875554322 33444 445556666789999999999999877665544444
Q ss_pred HHHH---HHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHH---HHHhcCchhHHHHHHHHHHHHHHHHhC
Q 015150 223 LLPA---IVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALC---MQWLKDKVYSIRDAAANNVKRLAEEFG 293 (412)
Q Consensus 223 ~~~~---l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l---~~~l~d~~~~vr~~a~~~l~~l~~~~~ 293 (412)
+++. +..+..+.+.+.|.++...++.++...|. +.+.+++..-+ .-.++|+++.|-.+.-..+..+..+++
T Consensus 340 ~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~ 419 (533)
T KOG2032|consen 340 LLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLV 419 (533)
T ss_pred chhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhH
Confidence 4443 55678999999999999999999998864 33444443222 223789988776543333333222222
Q ss_pred hhhhhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150 294 PDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 372 (412)
Q Consensus 294 ~~~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 372 (412)
-+. ...+++... |.. .+.+.-.-..+-.+...+. + ..-.+......+++..-+.||.++....+.....+.+
T Consensus 420 rke-~~~~~q~~l----d~~~~~~q~Fyn~~c~~L~~i~~-d-~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~ 492 (533)
T KOG2032|consen 420 RKE-LYHLFQESL----DTDMARFQAFYNQWCIQLNHIHP-D-ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVR 492 (533)
T ss_pred HHH-HHHHHhhhh----HHhHHHHHHHHHHHHHHHhhhCH-H-HHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHH
Confidence 221 112222211 211 1111111111111221111 0 1112233334455666668888888777766655544
Q ss_pred H----HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 373 S----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 373 ~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
. ....++...+..+..||-++|+..+.+|++.+..
T Consensus 493 ~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 493 AACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 3 2335677788889999999999999999998754
No 86
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.78 E-value=4.4e-05 Score=69.73 Aligned_cols=288 Identities=17% Similarity=0.184 Sum_probs=180.4
Q ss_pred hHHHHHHHHHHHHHHHHhhCHH-------HHHH-hhhhhHHHhcc-----CC--cHHHHHHHHHHHHhcCcccChhHHH-
Q 015150 118 EAEVRIAAAGKVTKICRILNPE-------LAIQ-HILPCVKELSS-----DS--SQHVRSALATVIMGMAPILGKDATI- 181 (412)
Q Consensus 118 ~~~vr~~a~~~l~~l~~~~~~~-------~~~~-~~~~~l~~~~~-----d~--~~~vr~~~~~~l~~l~~~~~~~~~~- 181 (412)
+...-...+.++..+.+....+ .+.+ .++|.+.+... +. ++.+-..+...+..+...++.+.-.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455566667776665543221 2222 26676666431 22 2566666666777666666654322
Q ss_pred --HhhHHHHHHh-----hc-ccC--hHHHHHHHHHHHHHHHhhchhhH---HhhHHHHHHHH-hcCCCchHHHHHHHHhh
Q 015150 182 --EQLLPIFLSL-----LK-DEF--PDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVEL-AEDRHWRVRLAIIEYIP 247 (412)
Q Consensus 182 --~~l~~~l~~~-----l~-d~~--~~vr~~~~~~l~~i~~~~~~~~~---~~~~~~~l~~~-~~d~~~~vr~~~~~~l~ 247 (412)
+.+...+... +. +.. .......+.-+..+...+.++.. ...++..+..+ ....++..|..+++.+.
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la 215 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLA 215 (415)
T ss_pred HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 2333333300 00 111 11233333444444444443322 12344444444 34456899999999999
Q ss_pred HHHhhhChhhHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHhC--hhhhhhhhHHHHHhhhcCCchHHHHHHHHHH
Q 015150 248 LLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFG--PDWAMQHIVPQVLEMINNPHYLYRMTILQAI 324 (412)
Q Consensus 248 ~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l 324 (412)
.++.........+.++..+.... .......|..++..+..+.+.+= .+.....++..+.+.+.+ ..+...+.+.+
T Consensus 216 ~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f 293 (415)
T PF12460_consen 216 SLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF 293 (415)
T ss_pred HHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence 99988755444444555555444 55566678888888877776541 122245677888888887 45667778888
Q ss_pred HHhcccc--------c-------hhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHH---HhhHHHHHHhh
Q 015150 325 SLLAPVM--------G-------SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV---EKSIRPCLVEL 386 (412)
Q Consensus 325 ~~l~~~~--------~-------~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~---~~~i~~~l~~l 386 (412)
+.+..-. + +..++..++|.+.+..++.....|..-+.+++.+.+.+....+ .+.++|.+.+.
T Consensus 294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqs 373 (415)
T PF12460_consen 294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQS 373 (415)
T ss_pred hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 7775331 1 2346778999999999888878999999999999998887643 46799999998
Q ss_pred cCCCCccHHHHHHHHHHHhHH
Q 015150 387 SEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 387 ~~d~~~~vr~~a~~al~~~~~ 407 (412)
++-+|.+++..+..++..+..
T Consensus 374 L~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 374 LSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred hCCCCHHHHHHHHHHHHHHHH
Confidence 888999999999999887765
No 87
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=1.3e-05 Score=70.73 Aligned_cols=253 Identities=16% Similarity=0.109 Sum_probs=153.0
Q ss_pred HHHHHHHhccCCchHHHHHHHHhHHHHhhccCchh--hhhh-hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCccc
Q 015150 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD--CVAH-ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS 104 (412)
Q Consensus 28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~--~~~~-l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~ 104 (412)
++..+..-..|++..+|..|+.+++.++...+++. ..+. +..++..+..+.+..|...++.+|..+...........
T Consensus 259 ~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~ 338 (533)
T KOG2032|consen 259 VLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLES 338 (533)
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhh
Confidence 33344444568888999999999999999966642 2233 44455567777788999999999999988877666555
Q ss_pred chHHH---HHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHH----hhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150 105 DVVPA---YVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQ----HILPCVKELSSDSSQHVRSALATVIMGMAPI 174 (412)
Q Consensus 105 ~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~----~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 174 (412)
.+++. +..+..|+++.+|.+++..++.+++..+.. .+.+ ...|++. .++|+++.|-.++-..+......
T Consensus 339 ~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lll-hl~d~~p~va~ACr~~~~~c~p~ 417 (533)
T KOG2032|consen 339 YLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLL-HLQDPNPYVARACRSELRTCYPN 417 (533)
T ss_pred hchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccccee-eeCCCChHHHHHHHHHHHhcCch
Confidence 55554 455788999999999999999999887542 2222 2333333 36899998876554444333333
Q ss_pred cChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhh---chhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHh
Q 015150 175 LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI---GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 251 (412)
Q Consensus 175 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~---~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 251 (412)
+ ..+.+...+.+.+ |.+-. |..+..+ .++..+ .++.. ..+......+++...+.+|.++...-..+..
T Consensus 418 l----~rke~~~~~q~~l-d~~~~-~~q~Fyn--~~c~~L~~i~~d~l-~~~~t~~~~~f~sswe~vr~aavl~t~~~vd 488 (533)
T KOG2032|consen 418 L----VRKELYHLFQESL-DTDMA-RFQAFYN--QWCIQLNHIHPDIL-MLLLTEDQHIFSSSWEQVREAAVLKTTRSVD 488 (533)
T ss_pred h----HHHHHHHHHhhhh-HHhHH-HHHHHHH--HHHHHHhhhCHHHH-HHHHHhchhheecchHHHHHHHHHHHHHHHH
Confidence 2 3333334444444 32221 3222211 111111 11111 2222333334444444788877766655554
Q ss_pred hhChhh----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 015150 252 QLGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 290 (412)
Q Consensus 252 ~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 290 (412)
...+.. ...++...+-.+..|+-++|+..+.++++.+..
T Consensus 489 ~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 489 SLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 443322 224455556667789999999999988877653
No 88
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=7.5e-05 Score=62.55 Aligned_cols=339 Identities=16% Similarity=0.172 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchh-------hhhhhHHHHHhhccCCCh
Q 015150 8 AATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD-------CVAHILPVIVNFSQDKSW 80 (412)
Q Consensus 8 a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~-------~~~~l~~~l~~l~~d~~~ 80 (412)
.+.++..+.+...+-++.+.++|.++.-+..++..++-.+|+.++.+.+...... ....+++.+..++...+.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 4566666666665666778889999888888888899999999999988876322 235588889999888899
Q ss_pred HHHHHHHHHHHHHHHHhC--CCCcccchHHHH--HHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhc
Q 015150 81 RVRYMVANQLYELCEAVG--PEPTRSDVVPAY--VRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELS 153 (412)
Q Consensus 81 ~vR~~~~~~l~~l~~~~~--~~~~~~~l~~~l--~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~ 153 (412)
.|-+++.+.+..++..-. ...+..++++-+ ..+.--.+.-+|....+.+..+....+.. --...++..+..-+
T Consensus 143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl 222 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL 222 (524)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence 999999999998875311 001111111111 11111123456666666666655433221 12334555555444
Q ss_pred cC-CcHHHHHHHHHHHHhcCccc-ChhHH-HHhhHHHHHHhhc--ccChHHHHHHHHHHHHHHHhhchhhHHh-------
Q 015150 154 SD-SSQHVRSALATVIMGMAPIL-GKDAT-IEQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQ------- 221 (412)
Q Consensus 154 ~d-~~~~vr~~~~~~l~~l~~~~-~~~~~-~~~l~~~l~~~l~--d~~~~vr~~~~~~l~~i~~~~~~~~~~~------- 221 (412)
+. .+.-|+..+.+....++..- |.+.. .+.++..+.+.+. |.+|.-. .+++..+++.+|.+.+.+
T Consensus 223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfek---fralmgfgkffgkeaimdvseeaic 299 (524)
T KOG4413|consen 223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEK---FRALMGFGKFFGKEAIMDVSEEAIC 299 (524)
T ss_pred cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHH---HHHHHHHHHHhcchHHhhcCHHHHH
Confidence 43 67788888888888776543 22222 2456666766654 4445433 334555555555433211
Q ss_pred ----hHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh-ChhhHHH----HHHHHHHHHhcCch-hHHHHHHHHHHHHHHHH
Q 015150 222 ----SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFFDD----KLGALCMQWLKDKV-YSIRDAAANNVKRLAEE 291 (412)
Q Consensus 222 ----~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~~~~----~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~ 291 (412)
..+.-..++.+..++....+++.+++.+.... |.+.+.. ..-.++.. ..|.+ ..-..+++++|..+...
T Consensus 300 ealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllar-afdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 300 EALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLAR-AFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred HHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHH-HhcccccchHHHHHHHHHHhhcc
Confidence 12222345567778888888888888887655 3322221 11112222 22333 23455666777666543
Q ss_pred hChhhhhhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150 292 FGPDWAMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 292 ~~~~~~~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~ 368 (412)
.-.+. + -..|.. .+.|.....+..+-.+ + .=+..++..++-|.|++|.++.+++..++.
T Consensus 379 lrlkp--e--------qitDgkaeerlrclifdaaaqstk-l-------dPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 379 LRLKP--E--------QITDGKAEERLRCLIFDAAAQSTK-L-------DPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred ccCCh--h--------hccccHHHHHHHHHHHHHHhhccC-C-------ChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 31110 0 112322 2233332222222111 1 113345666778889999999999888763
No 89
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=3.9e-05 Score=71.44 Aligned_cols=251 Identities=14% Similarity=0.151 Sum_probs=122.8
Q ss_pred hhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhH
Q 015150 144 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 223 (412)
Q Consensus 144 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~ 223 (412)
.+.+++..++.++...|-..++.++..+....+.+... -+..+..+++......|.++.+.|..++-..+.-. ...
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~~c 320 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--TVC 320 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--ccc
Confidence 35566666677777777777777766665444333211 34455556777777888888888877764422100 000
Q ss_pred HHHHHHHhcCCCchH-----------------------------------HHHHHHHhhHHHhhhChhhHHHHHHHHHHH
Q 015150 224 LPAIVELAEDRHWRV-----------------------------------RLAIIEYIPLLASQLGVGFFDDKLGALCMQ 268 (412)
Q Consensus 224 ~~~l~~~~~d~~~~v-----------------------------------r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ 268 (412)
-.-+..+..|.+-.+ +...+.++..++..++.. ...+++.+.+
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k--~~~~m~FL~~ 398 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRK--HTVMMNFLSN 398 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHH--HHHHHHHHHH
Confidence 011111222222111 111111111111111110 1223333333
Q ss_pred HhcC-chhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhh
Q 015150 269 WLKD-KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA 347 (412)
Q Consensus 269 ~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~ 347 (412)
+|.+ ...+-..+...++..+++.... ..+..+..+.+++.|.. .+.-+...+..+..-.+....-...+..+.+.
T Consensus 399 ~Lr~eGg~e~K~aivd~Ii~iie~~pd--sKe~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNR 474 (865)
T KOG1078|consen 399 MLREEGGFEFKRAIVDAIIDIIEENPD--SKERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNR 474 (865)
T ss_pred HHHhccCchHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhh
Confidence 3332 2233444444444444432211 12333344444444432 12233333333332222111111122222222
Q ss_pred cCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 348 SKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 348 l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
.-=.+..||.++..++.++. .+.+...+.|.-.++.+++|+|.+||..|..++..+.
T Consensus 475 viLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 475 VILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 22235679999999999998 4455555678888899999999999999999888775
No 90
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.75 E-value=2.3e-05 Score=74.35 Aligned_cols=129 Identities=12% Similarity=0.130 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcC-CchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCc
Q 015150 275 YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP 353 (412)
Q Consensus 275 ~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~ 353 (412)
+.||..+.-++++++-.- +.+.+..+|.+.+-+.- ....+|...+-+++.+|.... ...+..+|.+...|.|+.+
T Consensus 945 ~~vra~~vvTlakmcLah--~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT--am~d~YiP~I~~~L~Dp~~ 1020 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAH--DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT--AMTDRYIPMIAASLCDPSV 1020 (1529)
T ss_pred hHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH--HHHHHhhHHHHHHhcCchH
Confidence 346666666666666433 22455677777765543 335677777777666664332 2456789999999999999
Q ss_pred hHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150 354 NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 354 ~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 408 (412)
-||+.++..|..+.+.=--.+.-..++-++..+ -|.+.++|..+-..++.+.+.
T Consensus 1021 iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l-~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQFGIVKWNGELFIRFMLAL-LDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHH-cccCHHHHHHHHHHHHHHHhh
Confidence 999999999998875311111123445555554 488899999999888887654
No 91
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.75 E-value=5.2e-08 Score=67.93 Aligned_cols=85 Identities=31% Similarity=0.445 Sum_probs=51.3
Q ss_pred HHHHhhc-cCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Q 015150 69 PVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP 147 (412)
Q Consensus 69 ~~l~~l~-~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 147 (412)
|.+.+.+ +|+++.+|..++.+|+.+.. .+.+|.+.++++|+++.||..|+.+|+.+.. +..++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~ 65 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAIP 65 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence 3444444 66777777777777764332 3566777777777777777777777766532 23556
Q ss_pred hHHHhccC-CcHHHHHHHHHHHH
Q 015150 148 CVKELSSD-SSQHVRSALATVIM 169 (412)
Q Consensus 148 ~l~~~~~d-~~~~vr~~~~~~l~ 169 (412)
.+.+++.+ +++.||..++.+++
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 66665543 44556666666553
No 92
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.74 E-value=2.2e-06 Score=68.26 Aligned_cols=110 Identities=21% Similarity=0.205 Sum_probs=71.3
Q ss_pred hHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHH
Q 015150 41 DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120 (412)
Q Consensus 41 ~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~ 120 (412)
+.+|..++.+++.++...+. ......|.+...++|+++.||+.++..|..+... +--.....++..+..++.|++++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence 56777777777777766543 3345666677777777777777777777776642 11122344556666777888888
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhc
Q 015150 121 VRIAAAGKVTKICRILNPELAIQHILPCVKELS 153 (412)
Q Consensus 121 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~ 153 (412)
||..|...+..+.....++.+.+.+.+.+..+.
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 888888888777776555655555555555443
No 93
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.73 E-value=7.9e-05 Score=71.09 Aligned_cols=352 Identities=14% Similarity=0.149 Sum_probs=203.5
Q ss_pred hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC--C
Q 015150 24 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--P 99 (412)
Q Consensus 24 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~--~ 99 (412)
....+++.+.++++.++..+...+...+..+.-+... ......+++.+.+++..++..++..+++.|.+++..-. .
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 4556778888888888888888888888877755322 23445688899999988889999999999998874322 2
Q ss_pred CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcCcccC
Q 015150 100 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILG 176 (412)
Q Consensus 100 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~ 176 (412)
.....-++|.+..++.|++ .|..++..|..++..-... ......+|.+.+++ ..+++.+...++..+.+++..-.
T Consensus 367 ~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR 444 (708)
T ss_pred HHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence 2233457899999998754 5667777777765421111 22234678877754 44566666655555555553321
Q ss_pred hh-HHH-HhhHHHHH-HhhcccChHHHHHHHHHHHHHHHhhch--hhHHhhHHHHHHHHhcC-CCchHHHHHHHHhhHHH
Q 015150 177 KD-ATI-EQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLA 250 (412)
Q Consensus 177 ~~-~~~-~~l~~~l~-~~l~d~~~~vr~~~~~~l~~i~~~~~~--~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~ 250 (412)
.. ... ..-++.+. ..++..++- - ++.+-.+...-|+ ..+.+.+.+ +...+.. +++.. .+++++.++
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D~l-L---lKlIRNiS~h~~~~k~~f~~~i~~-L~~~v~~~~~ee~---~vE~LGiLa 516 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRDPL-L---LKLIRNISQHDGPLKELFVDFIGD-LAKIVSSGDSEEF---VVECLGILA 516 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhcccHH-H---HHHHHHHHhcCchHHHHHHHHHHH-HHHHhhcCCcHHH---HHHHHHHHH
Confidence 11 111 12233333 334443332 1 2233333333221 122222223 3333333 34444 444555554
Q ss_pred hhh----ChhhHH--HHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHhChh--hhhhhhHHHHHhhhcCCc--hHHHH
Q 015150 251 SQL----GVGFFD--DKLGALCMQWLKDK--VYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPH--YLYRM 318 (412)
Q Consensus 251 ~~~----~~~~~~--~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~--~~~r~ 318 (412)
... +-..+. ..++|.+.+.|... .+++...++..+|.++..-... .....+++.+.++++... ...-.
T Consensus 517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~Vl 596 (708)
T PF05804_consen 517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVL 596 (708)
T ss_pred hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHH
Confidence 432 111121 25788888888643 3467777888888776422111 113457777777776543 33444
Q ss_pred HHHHHHHHhccccch-hH--HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh-------hchH---HHHhhHHHHHHh
Q 015150 319 TILQAISLLAPVMGS-EI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI-------VDQS---VVEKSIRPCLVE 385 (412)
Q Consensus 319 ~~~~~l~~l~~~~~~-~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~-------~~~~---~~~~~i~~~l~~ 385 (412)
..+.++.++...-.. +. ....+...++.++.|+++.||..+=.+|.-++.. +..+ .+..+.+..+..
T Consensus 597 Qil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~~ 676 (708)
T PF05804_consen 597 QILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMVES 676 (708)
T ss_pred HHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 455566666533211 11 1245777899999999999999988888776542 1122 345677777755
No 94
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.72 E-value=3e-06 Score=70.67 Aligned_cols=189 Identities=8% Similarity=0.065 Sum_probs=130.3
Q ss_pred hHHHHHHhcC-CChHHHHHHHHHHHHHHHHhhCHHHH-H-HhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHH
Q 015150 106 VVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELA-I-QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 182 (412)
Q Consensus 106 l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~-~-~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 182 (412)
-+..+..+++ ..++.+++.+.-+++..+.+.....+ . -..++.+.+++.++++.+|..+++++..++.........+
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 3455666665 45788999999999887665433322 2 2478999999999999999999999998886554433334
Q ss_pred hhHHHHHHhhc-c-cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC--hhhH
Q 015150 183 QLLPIFLSLLK-D-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFF 258 (412)
Q Consensus 183 ~l~~~l~~~l~-d-~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~ 258 (412)
..++.+.+... + -+.+++.++++.|..+.-.-.........+|.+..++...+..+|..+++.+..++..-. .+.+
T Consensus 93 ~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll 172 (254)
T PF04826_consen 93 MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELL 172 (254)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHH
Confidence 44455544322 2 367888888999888853322223334567888899999999999999999988876542 3334
Q ss_pred HHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHhCh
Q 015150 259 DDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGP 294 (412)
Q Consensus 259 ~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~ 294 (412)
..+..+-++.++... ..++...++..+..+.+.+..
T Consensus 173 ~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 173 SAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred hccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 445666677777664 566777777777777666544
No 95
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.71 E-value=2e-06 Score=79.27 Aligned_cols=233 Identities=14% Similarity=0.220 Sum_probs=173.4
Q ss_pred ChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhc-cc
Q 015150 117 NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DE 195 (412)
Q Consensus 117 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~ 195 (412)
.++.-+..-.+.|..+...++...+.+.++|.+...+.+ ..+.-...-.+..|++.....++...++|.+...++ ..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence 345667777888888888899998999999999887632 122222333444455555666667788888888877 34
Q ss_pred ChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHH-hcCch
Q 015150 196 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LKDKV 274 (412)
Q Consensus 196 ~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~ 274 (412)
..+++.-.++.+..+.+.+..+.+.+.++|.+...+++.+.+++..++..++.+++.+......+.++|.+.++ +...+
T Consensus 363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence 56777788888999999999999999999999999999999999999999999999998878888899998775 56788
Q ss_pred hHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhcc--ccchhHHHHhhHHHHHhhcCCCC
Q 015150 275 YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP--VMGSEITCSQLLPVVINASKDRV 352 (412)
Q Consensus 275 ~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~--~~~~~~~~~~il~~l~~~l~d~~ 352 (412)
..|+..++.+++.+++.+..-...+.++|.+... +.+++.+....+.....+.- ..|.+...+.++|.+..+...+.
T Consensus 443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 8899999999999998876655566666555544 33445556666665555532 22235567788888877765544
No 96
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.68 E-value=2.6e-06 Score=71.05 Aligned_cols=213 Identities=13% Similarity=0.107 Sum_probs=131.6
Q ss_pred HHHHHhhc-ccChHHHHHHHHHHHHHHHhhch-hhHH-hhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHH
Q 015150 186 PIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI-DLLS-QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 262 (412)
Q Consensus 186 ~~l~~~l~-d~~~~vr~~~~~~l~~i~~~~~~-~~~~-~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 262 (412)
..+..+++ .++|.++..+.-+++..+.+-.. +.+. -..++.+..++.++++.+|..++.++..++.........+..
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 44445555 34677887777777776543221 2221 235777888888888888888887777766554333222333
Q ss_pred HHHHHH-HhcC-chhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccc--hhHHHH
Q 015150 263 GALCMQ-WLKD-KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG--SEITCS 338 (412)
Q Consensus 263 ~~~l~~-~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~--~~~~~~ 338 (412)
++.+.+ ...+ .+..++.++++.|..+.-...........+|.++.++...+..+|..++..+..++..-. .+-...
T Consensus 95 i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~ 174 (254)
T PF04826_consen 95 IPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSA 174 (254)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhc
Confidence 333333 2332 356788888888777653222223334567777888888787888888888888875322 233455
Q ss_pred hhHHHHHhhcCCC-CchHHHHHHHHHHHHhhhhchH-------HH-----------HhhHHHHHHhhcCCCCccHHHHH
Q 015150 339 QLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQS-------VV-----------EKSIRPCLVELSEDPDVDVRFFA 398 (412)
Q Consensus 339 ~il~~l~~~l~d~-~~~vR~~~~~~l~~l~~~~~~~-------~~-----------~~~i~~~l~~l~~d~~~~vr~~a 398 (412)
+.++.++.+++.+ ..++-..++..+..+...+..+ .+ .+.+...|..+..+||++||..+
T Consensus 175 q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 175 QVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred cchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 5666777777654 4666777777777776554332 00 13466677778899999999764
No 97
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.65 E-value=4e-06 Score=66.72 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=85.2
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCCh
Q 015150 1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSW 80 (412)
Q Consensus 1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~ 80 (412)
.|.||..++.++|+++..++ ...+..+|.+...+.|+++.+|+.|+.++..+...- --..+..++..+..++.|+++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-MIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-ceeehhhhhHHHHHHHcCCCH
Confidence 37899999999999998775 456667888889999999999999999999887541 223455676777788899999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccchHHHHHH
Q 015150 81 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVR 112 (412)
Q Consensus 81 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ 112 (412)
.||..|...+..+.....++.+.+.+.+.+..
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~ 109 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYNNFPELISS 109 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999876555544434444333
No 98
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=6e-06 Score=77.34 Aligned_cols=177 Identities=19% Similarity=0.190 Sum_probs=121.8
Q ss_pred HhccCCcHHHHHHHHHHHHhcCccc--ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHH
Q 015150 151 ELSSDSSQHVRSALATVIMGMAPIL--GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 228 (412)
Q Consensus 151 ~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~ 228 (412)
..+.|+...+|..+...+..+++.= ..-...+.++..+.+.++|+++.|-.++++.+..++...+ +.++|.+.
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL~ 808 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDLS 808 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHHH
Confidence 3456777788888888887777522 2222335778888999999999999999998888887754 33455554
Q ss_pred HH----hcCCCchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---hhhhhh
Q 015150 229 EL----AEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQ 299 (412)
Q Consensus 229 ~~----~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~ 299 (412)
+. -+...+..|.-+.+++..++...|.-. +.+.+...++...+|++..-|..++.++|.++.... .+++.+
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e 888 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE 888 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH
Confidence 42 222223445555578888888777633 446688888888899988889999999999887653 343333
Q ss_pred hhHHHHH-hhhcCCchHHHHHHHHHHHHhccccch
Q 015150 300 HIVPQVL-EMINNPHYLYRMTILQAISLLAPVMGS 333 (412)
Q Consensus 300 ~~l~~l~-~~~~~~~~~~r~~~~~~l~~l~~~~~~ 333 (412)
++-.+. -...|.+..+|.+|++.+..+....|.
T Consensus 889 -v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~ 922 (982)
T KOG4653|consen 889 -VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE 922 (982)
T ss_pred -HHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence 333333 333467788888888888888776664
No 99
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.63 E-value=1.4e-05 Score=70.13 Aligned_cols=251 Identities=11% Similarity=0.083 Sum_probs=132.7
Q ss_pred CchhHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc--h-------------
Q 015150 1 MPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--Q------------- 61 (412)
Q Consensus 1 ~~~vR~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~--~------------- 61 (412)
||.+--+..+++..+....+-+. +..++..-+..++.+.++.+|.+++-.++.+.....+ +
T Consensus 120 ~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n 199 (728)
T KOG4535|consen 120 SSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSN 199 (728)
T ss_pred CchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCcccc
Confidence 34555667777777776433211 2333445556668999999999999888877653210 0
Q ss_pred ---------hhhhh-----------------------hHHH-----------------HHhhccC--CChHHHHHHHHHH
Q 015150 62 ---------DCVAH-----------------------ILPV-----------------IVNFSQD--KSWRVRYMVANQL 90 (412)
Q Consensus 62 ---------~~~~~-----------------------l~~~-----------------l~~l~~d--~~~~vR~~~~~~l 90 (412)
+.+++ ++.. ....... ....+|..+.+.|
T Consensus 200 ~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl 279 (728)
T KOG4535|consen 200 SATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVL 279 (728)
T ss_pred ccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHH
Confidence 00000 0000 0001100 1134788888888
Q ss_pred HHHHHHhCC-CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH----HHHHh-----hhhhH-----HHhccC
Q 015150 91 YELCEAVGP-EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQH-----ILPCV-----KELSSD 155 (412)
Q Consensus 91 ~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~-----~~~~l-----~~~~~d 155 (412)
..++.+++- ..+..++...+...+.+..+.++..+..++..++.....+ .+... +...+ .....|
T Consensus 280 ~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YD 359 (728)
T KOG4535|consen 280 TLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYD 359 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhh
Confidence 888887763 2234566777777888999999999999998887765422 11111 11111 111222
Q ss_pred -CcHHHHHHHHHHHHhcCccc--ChhHHHHhhHHHHHHhhcccCh-HHHHHHHHHHHHHHHhhch--h-hHHhhHHHHHH
Q 015150 156 -SSQHVRSALATVIMGMAPIL--GKDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIV 228 (412)
Q Consensus 156 -~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~-~vr~~~~~~l~~i~~~~~~--~-~~~~~~~~~l~ 228 (412)
..+....+.|..+..+...- |-+...+...+.|..-+.|... -++.+|++++....-.-+- + .+.......+.
T Consensus 360 s~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il 439 (728)
T KOG4535|consen 360 SEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAIL 439 (728)
T ss_pred hcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHH
Confidence 22344556666666665331 1122224566777777776543 4566666665543222110 0 11122333344
Q ss_pred HHhcCCCchHHHHHHHHhhHHHh
Q 015150 229 ELAEDRHWRVRLAIIEYIPLLAS 251 (412)
Q Consensus 229 ~~~~d~~~~vr~~~~~~l~~l~~ 251 (412)
..+.|+.-.+|..+...++.+..
T Consensus 440 ~sl~d~~ln~r~KaawtlgnITd 462 (728)
T KOG4535|consen 440 MSLEDKSLNVRAKAAWSLGNITD 462 (728)
T ss_pred HHhhhHhHhHHHHHHHHhhhhHH
Confidence 44455555555555555554443
No 100
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.62 E-value=3.2e-07 Score=68.23 Aligned_cols=107 Identities=19% Similarity=0.172 Sum_probs=77.5
Q ss_pred hhHHHHHhhhcCCchHHHHHHHHHHHHhccccch---hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH---
Q 015150 300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--- 373 (412)
Q Consensus 300 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--- 373 (412)
.+++.+.+.+.++++.+|..++.+++.++..... ......++|.+.+++.|+++.+|..++.+++.++...+..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 4667777777777788888888888888754221 2233478888888888888888888888888887654321
Q ss_pred HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 374 VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 374 ~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
.....+++.+.+++++.+.++|..+..++..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 233457888888888888888888888887765
No 101
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=1.5e-05 Score=73.20 Aligned_cols=170 Identities=19% Similarity=0.189 Sum_probs=104.0
Q ss_pred hhhHHHHHHHHHH-hccCCchHHHHHHHHhHHHHhhccCc----hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHH
Q 015150 22 AHLKSEIMSIFEE-LTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 96 (412)
Q Consensus 22 ~~~~~~l~~~l~~-l~~~~~~~~r~~a~~~l~~i~~~~~~----~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~ 96 (412)
+.+...++..+.. +.--+.+..-...++.+..+...++. ++....++..++.....++-.||..+++.|..+...
T Consensus 36 ~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~ 115 (892)
T KOG2025|consen 36 HEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE 115 (892)
T ss_pred hhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc
Confidence 3455556665553 22222222333344555555555443 455666777777888889999999999999888762
Q ss_pred hC--CCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcCc
Q 015150 97 VG--PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAP 173 (412)
Q Consensus 97 ~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~ 173 (412)
.. ++...+.+...+...+.|..+.||..|+.+|..+-.--.++.. .+...+..++ +|++++||+++..++..=.
T Consensus 116 ~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~--~v~n~l~~liqnDpS~EVRRaaLsnI~vdn- 192 (892)
T KOG2025|consen 116 NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC--PVVNLLKDLIQNDPSDEVRRAALSNISVDN- 192 (892)
T ss_pred ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCCcHHHHHHHHHhhccCc-
Confidence 22 2223345666667778899999999999999887532222211 1334444444 6899999999887664322
Q ss_pred ccChhHHHHhhHHHHHHhhcccChHHHHHH
Q 015150 174 ILGKDATIEQLLPIFLSLLKDEFPDVRLNI 203 (412)
Q Consensus 174 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~ 203 (412)
.-.|.+..-..|-+..+|.-+
T Consensus 193 ---------sTlp~IveRarDV~~anRrlv 213 (892)
T KOG2025|consen 193 ---------STLPCIVERARDVSGANRRLV 213 (892)
T ss_pred ---------ccchhHHHHhhhhhHHHHHHH
Confidence 334555555555555555543
No 102
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00074 Score=64.95 Aligned_cols=346 Identities=13% Similarity=0.114 Sum_probs=198.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccC---c----------hhhhhhhHHH
Q 015150 4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE---P----------QDCVAHILPV 70 (412)
Q Consensus 4 vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~---~----------~~~~~~l~~~ 70 (412)
+|-....++..+.+.-.+ .-|+.+++.+..++++.+...-..|+-++..+++.-. + +...+.++..
T Consensus 105 iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~ 183 (1010)
T KOG1991|consen 105 IRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQI 183 (1010)
T ss_pred HHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Confidence 466666666666654333 4588899999999999988777888888887776421 1 1122334444
Q ss_pred HHhhccCCChH---HHHHHHHHHHHHHHH-hCCCCcc----cchHHHHHHhcC----------C-------ChHHHHHHH
Q 015150 71 IVNFSQDKSWR---VRYMVANQLYELCEA-VGPEPTR----SDVVPAYVRLLR----------D-------NEAEVRIAA 125 (412)
Q Consensus 71 l~~l~~d~~~~---vR~~~~~~l~~l~~~-~~~~~~~----~~l~~~l~~~l~----------d-------~~~~vr~~a 125 (412)
+..++.+++.. ..+..++.+-.++.. ++..... ...+..+...++ | +-|.+++-|
T Consensus 184 ~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa 263 (1010)
T KOG1991|consen 184 FNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWA 263 (1010)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHH
Confidence 45566665543 344444444444432 2222211 122233333332 2 225688999
Q ss_pred HHHHHHHHHhhCHH--------H--------HHHhhhhhHHHhcc---C---CcHHHHHHHHHHHHhcCcccChhHHHHh
Q 015150 126 AGKVTKICRILNPE--------L--------AIQHILPCVKELSS---D---SSQHVRSALATVIMGMAPILGKDATIEQ 183 (412)
Q Consensus 126 ~~~l~~l~~~~~~~--------~--------~~~~~~~~l~~~~~---d---~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 183 (412)
+..+.++.+..+.. . +...++..+.+.+. . -+++|-..+...+.+.... ...-+.
T Consensus 264 ~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~---~~twkl 340 (1010)
T KOG1991|consen 264 LHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSH---ASTWKL 340 (1010)
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccH---HHHHHH
Confidence 99999988766432 1 12223333333321 1 2334444444444433321 111122
Q ss_pred hHHHHHHhh-------------------cccChHHHH-------------HHHHHHHHHHHhhchhhHHhhHHHHHHHHh
Q 015150 184 LLPIFLSLL-------------------KDEFPDVRL-------------NIISKLDQVNQVIGIDLLSQSLLPAIVELA 231 (412)
Q Consensus 184 l~~~l~~~l-------------------~d~~~~vr~-------------~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~ 231 (412)
+-|++.-++ .|+...+|. ++...+..++..=|++.+ +.+++.+.+.+
T Consensus 341 l~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l-~k~l~F~~~Il 419 (1010)
T KOG1991|consen 341 LKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETL-PKILSFIVDIL 419 (1010)
T ss_pred hhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhh-hhHHHHHHHHH
Confidence 333332222 123344554 445555555555445554 66677666655
Q ss_pred c--------CCCchHHHHHHHHhhHHHhhhChh-----hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HHhChhhh
Q 015150 232 E--------DRHWRVRLAIIEYIPLLASQLGVG-----FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA-EEFGPDWA 297 (412)
Q Consensus 232 ~--------d~~~~vr~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~-~~~~~~~~ 297 (412)
. ..+++-+.+++..++.++..+.+. .....+.++++..++++.--.|..|+..++.+. ..+..+..
T Consensus 420 ~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~ 499 (1010)
T KOG1991|consen 420 TRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNN 499 (1010)
T ss_pred HhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHH
Confidence 4 346788889999999998776432 233446677777789999999999999999988 44554444
Q ss_pred hhhhHHHHHhhhc-CCchHHHHHHHHHHHHhccccch--hHH---HHhhHHHHHhhcCCCCch
Q 015150 298 MQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGS--EIT---CSQLLPVVINASKDRVPN 354 (412)
Q Consensus 298 ~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~--~~~---~~~il~~l~~~l~d~~~~ 354 (412)
...++....+.+. |+.-.||..++.++..+...... +.+ .+.++..++++.++-+-.
T Consensus 500 l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End 562 (1010)
T KOG1991|consen 500 LSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEND 562 (1010)
T ss_pred HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchh
Confidence 4556666666666 77788999999999998765542 223 334445556655554433
No 103
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=7.8e-05 Score=68.74 Aligned_cols=203 Identities=16% Similarity=0.120 Sum_probs=97.5
Q ss_pred HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc--hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHH
Q 015150 182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 259 (412)
Q Consensus 182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~--~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 259 (412)
+.++-++.+.....+..||..+.+-+..+....+ ++...+.+...+...+.|..+.||..++.++..+-..-+.+..
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~- 162 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC- 162 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc-
Confidence 3344444444445556666666666665554322 2333355555555566666666666666665554432222111
Q ss_pred HHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHH-HHHHHhccccchhHHH
Q 015150 260 DKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTIL-QAISLLAPVMGSEITC 337 (412)
Q Consensus 260 ~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~-~~l~~l~~~~~~~~~~ 337 (412)
.+...+..++ +|++++||.+|+.++.. ...-+|.+++...|-+..+|..+. .++..+ .....+ -
T Consensus 163 -~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anRrlvY~r~lpki-d~r~ls--i 228 (892)
T KOG2025|consen 163 -PVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANRRLVYERCLPKI-DLRSLS--I 228 (892)
T ss_pred -cHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhhhh--H
Confidence 1233333322 46666677766655432 233456666666665544444333 333333 111111 1
Q ss_pred HhhHHHHHhhcCCCCchHHHHHHHHHHH-HhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHH
Q 015150 338 SQLLPVVINASKDRVPNIKFNVAKVLQS-LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 404 (412)
Q Consensus 338 ~~il~~l~~~l~d~~~~vR~~~~~~l~~-l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~ 404 (412)
++-...+-.+++|....||.++.+++.. |..... ..+++.|.++--...++|+..+.+|+-.
T Consensus 229 ~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~d-----gni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 229 DKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSD-----GNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcc-----ccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1223344445666666666666665543 222111 2344555554333444566666666555
No 104
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=6.6e-05 Score=62.88 Aligned_cols=283 Identities=14% Similarity=0.122 Sum_probs=166.9
Q ss_pred HHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCc-------ccchHHHHHHhcCCCh
Q 015150 46 LAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-------RSDVVPAYVRLLRDNE 118 (412)
Q Consensus 46 ~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~-------~~~l~~~l~~~l~d~~ 118 (412)
.+..++..+.+.--+....+.+.|.+...+..++..|+..+++.++.+.+.++.... -..+++.+..++..++
T Consensus 62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged 141 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED 141 (524)
T ss_pred hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence 367777777776656667788899999999999999999999999999987764331 3568999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhH--HHhccCCcHHHHHHHHHHHHhcCcccC---hhHHHHhhHHHHHHh
Q 015150 119 AEVRIAAAGKVTKICRILNPE--LAIQHILPCV--KELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSL 191 (412)
Q Consensus 119 ~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l--~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~ 191 (412)
.+|-++|++.+..++.+...- .|...+...+ .++..-.+.-+|..+.+.+..+.+.-+ .++....++..+..-
T Consensus 142 deVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaE 221 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAE 221 (524)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHH
Confidence 999999999999887642211 1111122211 122223355667777777666654332 233345677777666
Q ss_pred hcc-cChHHHHHHHHHHHHHHHhhchhhH--HhhHHHHHHHHh--cCCCchHHHHHHHHhhHHHhhhChhhHH-------
Q 015150 192 LKD-EFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELA--EDRHWRVRLAIIEYIPLLASQLGVGFFD------- 259 (412)
Q Consensus 192 l~d-~~~~vr~~~~~~l~~i~~~~~~~~~--~~~~~~~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~~~~------- 259 (412)
++- ++.-|+.+++.....++..-....+ ...++..+.... .|.+|--+.-+ +....+.+|++...
T Consensus 222 lkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfra---lmgfgkffgkeaimdvseeai 298 (524)
T KOG4413|consen 222 LKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRA---LMGFGKFFGKEAIMDVSEEAI 298 (524)
T ss_pred hcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHH---HHHHHHHhcchHHhhcCHHHH
Confidence 654 5677888888777777543221111 123344444332 23333322212 22233333332221
Q ss_pred -HH---HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh-hhhhhhhHHHH---HhhhcCCc-hHHHHHHHHHHHHhccc
Q 015150 260 -DK---LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-DWAMQHIVPQV---LEMINNPH-YLYRMTILQAISLLAPV 330 (412)
Q Consensus 260 -~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~l~~l---~~~~~~~~-~~~r~~~~~~l~~l~~~ 330 (412)
+. .+.-.+.+....++....+|+.++|.+..+... +.+.+.--|.. +....|.+ ..-.+++++++..++..
T Consensus 299 cealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 299 CEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred HHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence 11 122223445566788889999999988765532 22222222222 22222333 33456788888888754
Q ss_pred c
Q 015150 331 M 331 (412)
Q Consensus 331 ~ 331 (412)
+
T Consensus 379 l 379 (524)
T KOG4413|consen 379 L 379 (524)
T ss_pred c
Confidence 3
No 105
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.58 E-value=0.00014 Score=66.91 Aligned_cols=260 Identities=17% Similarity=0.160 Sum_probs=120.0
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChH
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWR 81 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~ 81 (412)
+.+++-+++.|..+.+.++. ..+..+..+..++.|++..+|..|++.|..+++.. .+....+..++.++++..++.
T Consensus 36 ~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~QlL~tdd~~ 111 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQLLQTDDPV 111 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---HH
T ss_pred HHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHHHHhcccHH
Confidence 34555666666666665542 33445555555577777777777777776666552 224556666666776665655
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc--CCChHHHHHHHHHHHHHHHHhhC------HHHHHHhhhhhHHHhc
Q 015150 82 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL--RDNEAEVRIAAAGKVTKICRILN------PELAIQHILPCVKELS 153 (412)
Q Consensus 82 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~~~ 153 (412)
.+..+=++|..+...-. ...+-..+.... ...+..+|..++..|..-...++ .++....++..+.+.+
T Consensus 112 E~~~v~~sL~~ll~~d~----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL 187 (556)
T PF05918_consen 112 ELDAVKNSLMSLLKQDP----KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL 187 (556)
T ss_dssp HHHHHHHHHHHHHHH-H----HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCc----HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH
Confidence 55555555555443211 111222222332 13445677777766643222211 1344555667777777
Q ss_pred cCCcHHHHHHHHHHHHhcCccc--ChhHHHHhhHHHHHHhhc-c-----cChHHHHHHHHHHHHHHHhhch----hhHHh
Q 015150 154 SDSSQHVRSALATVIMGMAPIL--GKDATIEQLLPIFLSLLK-D-----EFPDVRLNIISKLDQVNQVIGI----DLLSQ 221 (412)
Q Consensus 154 ~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~-d-----~~~~vr~~~~~~l~~i~~~~~~----~~~~~ 221 (412)
.|-...-=..++..|..+-..- ......+.|++.+..... | .+++.-...+.++..-...+.. ..+..
T Consensus 188 ~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~ 267 (556)
T PF05918_consen 188 QDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVN 267 (556)
T ss_dssp TT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHH
T ss_pred HhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHH
Confidence 7744322233344444433211 112233567777665432 1 2344444455554444433332 22222
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHh
Q 015150 222 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 270 (412)
Q Consensus 222 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 270 (412)
.+...+...+.+-....|..+++.+..++...|... ...++|.+...|
T Consensus 268 y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L 315 (556)
T PF05918_consen 268 YMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLL 315 (556)
T ss_dssp HHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHH
T ss_pred HHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHH
Confidence 222222222333345677888999999999888655 444556666655
No 106
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.56 E-value=8.8e-07 Score=65.82 Aligned_cols=107 Identities=14% Similarity=0.065 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh---ChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---
Q 015150 261 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEF---GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--- 334 (412)
Q Consensus 261 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--- 334 (412)
.+++.+.+++.+.++.+|..++.+++.+.... ........++|.+.+.+.++++.++..++.+++.++...+..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 36777788888888889999999988887642 122233478888888889888999999999999998755332
Q ss_pred HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150 335 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 367 (412)
Q Consensus 335 ~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 367 (412)
.....+++.+.+.+.+.+..+|..++.++..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 233458889999999888999999999888765
No 107
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.55 E-value=9.4e-06 Score=71.03 Aligned_cols=191 Identities=14% Similarity=0.167 Sum_probs=132.0
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCHHHH-
Q 015150 67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELA- 141 (412)
Q Consensus 67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~- 141 (412)
+...+.+...+....-|+.+...|..+...-+. +.+..+++..+.+.+.| .+...|+.|+..|..+++..+...+
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 444555555565666778877766665542211 11235678888888888 8899999999999999987655422
Q ss_pred -HHhhhhhHHHhccCCcHHHHHHHHHHHH-hcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH
Q 015150 142 -IQHILPCVKELSSDSSQHVRSALATVIM-GMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 219 (412)
Q Consensus 142 -~~~~~~~l~~~~~d~~~~vr~~~~~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~ 219 (412)
.+..+.-+++...|....|-..+.+.+. .++.+.+-.+ ...+.|.+.. .+...-..+++.+..+.+.+..+.+
T Consensus 368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL 442 (516)
T KOG2956|consen 368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-IVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEEL 442 (516)
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-HHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHH
Confidence 2234555566677877766666666544 4444444433 2234444443 4455666788899999998887765
Q ss_pred ---HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHH
Q 015150 220 ---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 262 (412)
Q Consensus 220 ---~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 262 (412)
.+.+.|.+.+...+.+..||..++-++..+...+|.+.+.+++
T Consensus 443 ~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL 488 (516)
T KOG2956|consen 443 LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHL 488 (516)
T ss_pred HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHh
Confidence 4677899999999999999999999999999999976555543
No 108
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.00086 Score=63.23 Aligned_cols=360 Identities=17% Similarity=0.197 Sum_probs=193.1
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhh-ccCch---------hhhhhhHHHH
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGK-LLEPQ---------DCVAHILPVI 71 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~-~~~~~---------~~~~~l~~~l 71 (412)
|.+|+.+-++|..... ++.+.-.+++++.+-.. ++.+|.+|+-.+.+..+ .+.++ ..+..+...+
T Consensus 19 ps~rk~aEr~L~~~e~---q~~y~l~lL~Lv~~~~~--d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslI 93 (960)
T KOG1992|consen 19 PSVRKPAERALRSLEG---QQNYPLLLLNLVANGQQ--DPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLI 93 (960)
T ss_pred CccCchHHHHHHHhcc---CCCchHHHHHHHhccCc--ChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHH
Confidence 6777777777765443 23344445555433322 45678888877777776 34331 1233455566
Q ss_pred HhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC--------------
Q 015150 72 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-------------- 137 (412)
Q Consensus 72 ~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-------------- 137 (412)
..+.-+....+.....++++.+++.--+ ..|+.++|.+...++..|..+-.+....-..+.+...
T Consensus 94 v~lMl~s~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~ 172 (960)
T KOG1992|consen 94 VTLMLSSPFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKL 172 (960)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 6666666677777777777777753222 2356677777766664443222222222111111110
Q ss_pred ----------------------------------------------------HH---HHHHhhhhhHHHhcc--------
Q 015150 138 ----------------------------------------------------PE---LAIQHILPCVKELSS-------- 154 (412)
Q Consensus 138 ----------------------------------------------------~~---~~~~~~~~~l~~~~~-------- 154 (412)
++ ...+..++.+.++++
T Consensus 173 vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~ 252 (960)
T KOG1992|consen 173 VLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLES 252 (960)
T ss_pred HHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCccccc
Confidence 01 112334444444433
Q ss_pred C-C----cHHHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHhhcccChH-----HHHHHHHHHHHHHHhhch------
Q 015150 155 D-S----SQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPD-----VRLNIISKLDQVNQVIGI------ 216 (412)
Q Consensus 155 d-~----~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~-----vr~~~~~~l~~i~~~~~~------ 216 (412)
| . -..+|..+|+.+.-.+.....+. +..+++.....++.+..++ ....|++.|..+.+.-.-
T Consensus 253 ~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~ 332 (960)
T KOG1992|consen 253 DEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEG 332 (960)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcc
Confidence 1 1 12456666666655443332221 2234444455666554433 344455556555433110
Q ss_pred hh-----------------------HHhhHHHHHHHHhcCCCch-HHHHHHHHhhHHHhhhChhh---HHHHHHHHHHHH
Q 015150 217 DL-----------------------LSQSLLPAIVELAEDRHWR-VRLAIIEYIPLLASQLGVGF---FDDKLGALCMQW 269 (412)
Q Consensus 217 ~~-----------------------~~~~~~~~l~~~~~d~~~~-vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~ 269 (412)
+. +.+.-+..+.+-++-.|.. -|++++..+..+++.+.... +..++-..+-++
T Consensus 333 ~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y 412 (960)
T KOG1992|consen 333 ENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQY 412 (960)
T ss_pred hHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 11 1111222233333333333 36778888888888774322 222222333333
Q ss_pred hcC--chhHHHHHHHHHHHHHHHHh-----C----------hhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccc
Q 015150 270 LKD--KVYSIRDAAANNVKRLAEEF-----G----------PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG 332 (412)
Q Consensus 270 l~d--~~~~vr~~a~~~l~~l~~~~-----~----------~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 332 (412)
..+ .+|.-...|+..+..+...- | .+++...++|.|..--....+.+|..++..+-.+-..++
T Consensus 413 ~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~ 492 (960)
T KOG1992|consen 413 SKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLG 492 (960)
T ss_pred ccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCC
Confidence 333 34555555555544444321 1 245566777777764445667888888888877777777
Q ss_pred hhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150 333 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 333 ~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~ 368 (412)
++ ..-.++|.+...|..+..-|-.-|+.++.++..
T Consensus 493 ~~-~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 493 KE-HLMALLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred hH-HHHHHHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 76 455788999999999888899999999988854
No 109
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.53 E-value=2.8e-05 Score=68.33 Aligned_cols=406 Identities=12% Similarity=0.098 Sum_probs=232.0
Q ss_pred chhHHHHHHHHHHHHHHhhhh---hhHHHHHHH---------HHHhccCCchHHHHHHHHhHHHHhhc----------cC
Q 015150 2 PMVRRSAATNLGKFAATVEAA---HLKSEIMSI---------FEELTQDDQDSVRLLAVEGCGALGKL----------LE 59 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~---~~~~~l~~~---------l~~l~~~~~~~~r~~a~~~l~~i~~~----------~~ 59 (412)
..||+.+.-++....+.++.. .+|..++|- +.--++|+++..|..|++.+..+... .+
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~ 89 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTS 89 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence 468999999999998887754 356666653 22246899999999999888877653 12
Q ss_pred chhhhhh----------hHHH-HHhhccCCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCChHHHHHH
Q 015150 60 PQDCVAH----------ILPV-IVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIA 124 (412)
Q Consensus 60 ~~~~~~~----------l~~~-l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~ 124 (412)
+..+.+. +... +..+..+.++.+-..++++|+.+....+-+. +..+++..+..++.+.++.||..
T Consensus 90 ~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs 169 (728)
T KOG4535|consen 90 DHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVS 169 (728)
T ss_pred CcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhH
Confidence 2111111 1222 2234456667777888899988876544332 22356777788899999999999
Q ss_pred HHHHHHHHHHhh--CHH----------------------HHHHh------------------------------hhhhHH
Q 015150 125 AAGKVTKICRIL--NPE----------------------LAIQH------------------------------ILPCVK 150 (412)
Q Consensus 125 a~~~l~~l~~~~--~~~----------------------~~~~~------------------------------~~~~l~ 150 (412)
++..++.+...- .++ ++.+. +.|.+.
T Consensus 170 ~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~ 249 (728)
T KOG4535|consen 170 SLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPK 249 (728)
T ss_pred HHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCC
Confidence 999998875431 111 00000 001100
Q ss_pred ----------HhccC--CcHHHHHHHHHHHHhcCcccChhH-HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc--
Q 015150 151 ----------ELSSD--SSQHVRSALATVIMGMAPILGKDA-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-- 215 (412)
Q Consensus 151 ----------~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~-- 215 (412)
..+.. ....+|-.+.+.+..++.++|--. ...++.-.+...+.+..+.+...+...+..++..++
T Consensus 250 ~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~ 329 (728)
T KOG4535|consen 250 EDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQ 329 (728)
T ss_pred ccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhh
Confidence 00100 112345555555555555554321 122344444555668889999999999888876655
Q ss_pred --hhhHHhhH-HHHH----------HHHhcCCCchHHHHHHHHhhHHHhhh--ChhhHHHHHHHHHHHHhcCch-hHHHH
Q 015150 216 --IDLLSQSL-LPAI----------VELAEDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLKDKV-YSIRD 279 (412)
Q Consensus 216 --~~~~~~~~-~~~l----------~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~-~~vr~ 279 (412)
++...... ...+ ........+..+.+.+..+..+.... +-..-.....+.+.....|.. .-|+.
T Consensus 330 ~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~ 409 (728)
T KOG4535|consen 330 YKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKA 409 (728)
T ss_pred cCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHH
Confidence 22111111 1101 11122234455666666665554322 111112345666666666543 44888
Q ss_pred HHHHHHHHHHHHhChh---hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccc----h-hHHHHhhHHH----HHhh
Q 015150 280 AAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG----S-EITCSQLLPV----VINA 347 (412)
Q Consensus 280 ~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~----~-~~~~~~il~~----l~~~ 347 (412)
+|.++++.++-.-+-. .+.......+...+.|.....|+.+...++.+...+- . +.+.+.+... ++..
T Consensus 410 aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~ 489 (728)
T KOG4535|consen 410 AASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRS 489 (728)
T ss_pred HHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHH
Confidence 8888877655333321 1233445566677788888899999999998865432 1 2233333222 2221
Q ss_pred ---cCCCCchHHHHHHHHHHHHhhhhchH-------HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 348 ---SKDRVPNIKFNVAKVLQSLIPIVDQS-------VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 348 ---l~d~~~~vR~~~~~~l~~l~~~~~~~-------~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
..-....||..+.++|+.+.+.+.+- .....+...+..-.......||.+++.+++.+.+
T Consensus 490 A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 490 AIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred HHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence 12235689999999999998876531 1112233333333445566899999999998865
No 110
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=0.0014 Score=64.24 Aligned_cols=144 Identities=14% Similarity=0.181 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHhc----CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhc-CCchHHHHHHHHHHHHhccccc
Q 015150 258 FDDKLGALCMQWLK----DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMG 332 (412)
Q Consensus 258 ~~~~l~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~ 332 (412)
+...+.|++....+ -.+++++.+|.-+++++.- ++.+ +...-+|.+...+. .+++.+|..++-+++.++-.++
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~-fces~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHH-HHHHHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 34456777777763 3468899999999999875 3344 35567788888776 7889999999999999986665
Q ss_pred hhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 333 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 333 ~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
. ..+..-+.+...+.|+++.||.+|.-+++.+.. .+-.-....++.+..++.||+..+|..|...+..+..
T Consensus 994 n--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLIL--ndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 994 N--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLIL--NDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred c--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHH--hhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 4 345566778889999999999999999998864 2223345678888889999999999999977766543
No 111
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.44 E-value=0.00096 Score=63.71 Aligned_cols=147 Identities=15% Similarity=0.143 Sum_probs=100.5
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhH---HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh--h
Q 015150 221 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--D 295 (412)
Q Consensus 221 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~ 295 (412)
..+.|.+.+......-..|......++.+....+.+.. .+.+.|++++.|+=++..||..+..++..+....+. .
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 45566666666655556677777777777666655443 355778888888777778888887777777665442 2
Q ss_pred hhhhhhHHHHHhhhcCCc---hHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150 296 WAMQHIVPQVLEMINNPH---YLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 367 (412)
Q Consensus 296 ~~~~~~l~~l~~~~~~~~---~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 367 (412)
...+.++|.++.+-.|++ -.+|+.|+++++.+.+..+.. .|.+.++..+.+.|.|+..-||..|.++=+.+.
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 234567777777766655 457888888888877755544 467777777788888887778887777666554
No 112
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.42 E-value=3.2e-05 Score=62.73 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCC--chHHHHHHHHHHHHhccccchhHHHHh
Q 015150 262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEITCSQ 339 (412)
Q Consensus 262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~~~~~~~ 339 (412)
-+..+...+.+++.-.|..++-.+|++-. +.-+|.+.+.+.|. ++.+|-.++++||.++ .+.
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa--------~e~ 251 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIA--------DED 251 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhc--------CHH
Confidence 44456777888888899999988887664 34567777766664 4789999999999987 357
Q ss_pred hHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150 340 LLPVVINASKDRVPNIKFNVAKVLQSL 366 (412)
Q Consensus 340 il~~l~~~l~d~~~~vR~~~~~~l~~l 366 (412)
.++.+.++++|+.+-||..+.-++.-.
T Consensus 252 ~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 252 CVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 888999999999999999998888644
No 113
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.42 E-value=0.0015 Score=60.06 Aligned_cols=382 Identities=14% Similarity=0.071 Sum_probs=198.7
Q ss_pred hHHHHHHHHHHhccCCc-hHHHHHHHHhHHHHhhccCchh-----hhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHh
Q 015150 24 LKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEPQD-----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 97 (412)
Q Consensus 24 ~~~~l~~~l~~l~~~~~-~~~r~~a~~~l~~i~~~~~~~~-----~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~ 97 (412)
.....++-+..++++.+ ..++...++++..+....+..+ ....+++.+..+...+...+-..-+......+..-
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~ 171 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK 171 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc
Confidence 44556677777787777 7789999999999988753321 22335555444443211111111111111111100
Q ss_pred CCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHH---HHHhhCHH-------HHHHhhhh--hHHHhccCCcHHHHHH
Q 015150 98 GPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTK---ICRILNPE-------LAIQHILP--CVKELSSDSSQHVRSA 163 (412)
Q Consensus 98 ~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~---l~~~~~~~-------~~~~~~~~--~l~~~~~d~~~~vr~~ 163 (412)
.... .-..+...+.-++.--+..+|.+|..++.. +...-+.. .....+.+ .+.++.+|++..-|..
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~ 251 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR 251 (678)
T ss_pred hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence 0000 011122222222222346789999999883 32221111 11122333 4556778888878887
Q ss_pred HHHHHHhcCccc-ChhH----------HHHhhHHHHHHhhcccChHHHHHHHH-----HHHHHHHhhchhhHHhhHHHHH
Q 015150 164 LATVIMGMAPIL-GKDA----------TIEQLLPIFLSLLKDEFPDVRLNIIS-----KLDQVNQVIGIDLLSQSLLPAI 227 (412)
Q Consensus 164 ~~~~l~~l~~~~-~~~~----------~~~~l~~~l~~~l~d~~~~vr~~~~~-----~l~~i~~~~~~~~~~~~~~~~l 227 (412)
.+.++..+...- ..+. -.+.++.+..-.+.. +|-++.-... -+.++.+.+.........++..
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~-~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~ 330 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMN-DPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT 330 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeec-CCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence 877776654221 0000 011222222222111 1222211111 1122222222111112222222
Q ss_pred HHH------hcCCCchHHHHHHHHh---hHHHhhhCh----hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh--
Q 015150 228 VEL------AEDRHWRVRLAIIEYI---PLLASQLGV----GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-- 292 (412)
Q Consensus 228 ~~~------~~d~~~~vr~~~~~~l---~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-- 292 (412)
.++ +....++.|.-++.-. .......+. +.........+.....-.+..++.+|+.++..+...+
T Consensus 331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~a 410 (678)
T KOG1293|consen 331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSA 410 (678)
T ss_pred HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 222 2334455555443321 112222221 1112223333333334456778888988877766543
Q ss_pred -ChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch---hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150 293 -GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 293 -~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~ 368 (412)
....-...+...+.+++.||+-.+..+++.++..+.-.+|. .+.....+..+.+++.++.+++|..+.++|.++.-
T Consensus 411 L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 411 LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 22222456777788888999999999999999998766664 25566788899999999999999999999998864
Q ss_pred hhchHH---HHhh-HHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 369 IVDQSV---VEKS-IRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 369 ~~~~~~---~~~~-i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
.-..+. +... -...+.-+.+|||+.|+..+...+..+.
T Consensus 491 ~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 491 NCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 333221 1122 2334455789999999998887776553
No 114
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.0011 Score=62.30 Aligned_cols=288 Identities=12% Similarity=0.146 Sum_probs=169.7
Q ss_pred hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHH
Q 015150 64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ 143 (412)
Q Consensus 64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 143 (412)
...+++++-.++.++...|-..+++++..+....+.+.. ..+..+.-+++.+....|.+|...|.+++...+....
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-- 318 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-- 318 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc--
Confidence 456888888889988888988888888776654443332 2566777789999999999999999998876554321
Q ss_pred hhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhH
Q 015150 144 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 223 (412)
Q Consensus 144 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~ 223 (412)
..-.-+..+++|.+..+-.-+...+-.-+ .+...+.++..+..+..|-+.+-..-+..++..++..++... ..+
T Consensus 319 ~cN~elE~lItd~NrsIat~AITtLLKTG----~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~--~~~ 392 (865)
T KOG1078|consen 319 VCNLDLESLITDSNRSIATLAITTLLKTG----TESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH--TVM 392 (865)
T ss_pred ccchhHHhhhcccccchhHHHHHHHHHhc----chhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH--HHH
Confidence 12344556777877666555554444333 333344454444444433333333333334444443333221 345
Q ss_pred HHHHHHHhc-CCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhH
Q 015150 224 LPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV 302 (412)
Q Consensus 224 ~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l 302 (412)
++.+..++. +....-+.+.++++..+++..... ....+..+..++.|... +.-+...|+.+.+......--...+
T Consensus 393 m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LCefIEDce~--~~i~~rILhlLG~EgP~a~~Pskyi 468 (865)
T KOG1078|consen 393 MNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLCEFIEDCEF--TQIAVRILHLLGKEGPKAPNPSKYI 468 (865)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHHHHHHhccc--hHHHHHHHHHHhccCCCCCCcchhh
Confidence 566655554 445677888888887777654322 12233333444444322 3334444444443221110011233
Q ss_pred HHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150 303 PQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 367 (412)
Q Consensus 303 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 367 (412)
-.+.+..-=.+..+|.+++.++..++ .+.+...+.+.-.+..++.|++.+||..|.-.+..+-
T Consensus 469 r~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 469 RFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 33333333356789999999999887 3444455667777788889999999988887777664
No 115
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.0012 Score=62.33 Aligned_cols=341 Identities=11% Similarity=0.100 Sum_probs=192.4
Q ss_pred HHHHHHHhcc-CCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccCC--ChHHHHHHHHHHHHHHHHhCCC-
Q 015150 28 IMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPE- 100 (412)
Q Consensus 28 l~~~l~~l~~-~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d~--~~~vR~~~~~~l~~l~~~~~~~- 100 (412)
-+.++.+-+. ++-+..|+.|+..+..+++.+.. .....++-..+.++..+| +|+-+..++..+..++-..+..
T Consensus 362 pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~ 441 (960)
T KOG1992|consen 362 PLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAK 441 (960)
T ss_pred HHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhh
Confidence 5555655554 33445678899999999998733 223344555556666664 5887888888777777543211
Q ss_pred --------------CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHH
Q 015150 101 --------------PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALAT 166 (412)
Q Consensus 101 --------------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~ 166 (412)
.+..+++|.+..-=.++.+-+|..+++-+..+-..++++..+ .++|.+...++..+.-|-..++.
T Consensus 442 ~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm-~~~p~li~~L~a~s~vvhsYAA~ 520 (960)
T KOG1992|consen 442 HGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLM-ALLPRLIRFLEAESRVVHSYAAI 520 (960)
T ss_pred cceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHH-HHHHHHHHhccCcchHHHHHHHH
Confidence 112234444433223567889999998888887777777554 46788888898888888888888
Q ss_pred HHHhcCcc--------cChhHHHHhhHHHHHHhh---cccChHHHHHHHHHHHHHHHhhchh------hHHhhHHHHHHH
Q 015150 167 VIMGMAPI--------LGKDATIEQLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGID------LLSQSLLPAIVE 229 (412)
Q Consensus 167 ~l~~l~~~--------~~~~~~~~~l~~~l~~~l---~d~~~~vr~~~~~~l~~i~~~~~~~------~~~~~~~~~l~~ 229 (412)
++..+... ++.+.....+.+.+..+. +-++..--.-.++++-++....... .....+...+.+
T Consensus 521 aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~ 600 (960)
T KOG1992|consen 521 AIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEE 600 (960)
T ss_pred HHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHH
Confidence 88876432 333322222233333333 1111111122334444444332211 112333344444
Q ss_pred HhcC-CCchHHHHHHHHhhHHHhhhChhh------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhH
Q 015150 230 LAED-RHWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV 302 (412)
Q Consensus 230 ~~~d-~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l 302 (412)
..++ .+|..-+...+.++.+....+... +...++|.+...+..+-.+.--.+++.++.+++..+. .+.+.+.
T Consensus 601 v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~-~ip~~~~ 679 (960)
T KOG1992|consen 601 VSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSG-TIPDSYS 679 (960)
T ss_pred HhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCchhHH
Confidence 5555 357777777888888777665433 6778999999988888777777888888888887654 2223333
Q ss_pred HHHHhhhcCCchHHHH---HHHHHHHHhccccchh----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150 303 PQVLEMINNPHYLYRM---TILQAISLLAPVMGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 372 (412)
Q Consensus 303 ~~l~~~~~~~~~~~r~---~~~~~l~~l~~~~~~~----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 372 (412)
|.+..++...-|..+. +.+..+..+.+.-+.. .....++..+.+++.++.... .....+..+...+.+
T Consensus 680 ~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh--~GF~LLn~i~~~~~~ 754 (960)
T KOG1992|consen 680 PLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDH--HGFYLLNTIIESIPP 754 (960)
T ss_pred HHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccch--hHHHHHHHHHhcCCH
Confidence 3333333333344332 3444444444332222 123345555555554433222 334444444444443
No 116
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=6.4e-05 Score=69.56 Aligned_cols=156 Identities=18% Similarity=0.134 Sum_probs=79.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHh-ccCCcHHHHHHHHHHHHhcCcccChhHHHHhhH
Q 015150 107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL-SSDSSQHVRSALATVIMGMAPILGKDATIEQLL 185 (412)
Q Consensus 107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 185 (412)
=|.+.+++.|.++-.|...+..++----..+.. ..+..+++. .+|.+..||++++.++|-+.-. .....
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn----kair~lLh~aVsD~nDDVrRaAVialGFVl~~------dp~~~ 590 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGNN----KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR------DPEQL 590 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccCch----hhHHHhhcccccccchHHHHHHHHHheeeEec------Chhhc
Confidence 355666666777777766666554321111222 122333332 4666777777777666655421 11233
Q ss_pred HHHHHhhccc-ChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhH--HHHH
Q 015150 186 PIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKL 262 (412)
Q Consensus 186 ~~l~~~l~d~-~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l 262 (412)
|...+++.+. ++.||..++-+|+-.+...|. +..+..+..+.+|+.--||+.++-.++.+.-+...+.. ...+
T Consensus 591 ~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~----~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~f 666 (929)
T KOG2062|consen 591 PSTVSLLSESYNPHVRYGAAMALGIACAGTGL----KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGF 666 (929)
T ss_pred hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc----HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHH
Confidence 4455554443 567777777777666655552 22344455555666666777666666655544332211 1223
Q ss_pred HHHHHHHhcCchhH
Q 015150 263 GALCMQWLKDKVYS 276 (412)
Q Consensus 263 ~~~l~~~l~d~~~~ 276 (412)
...+.+.+.|.+.+
T Consensus 667 rk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 667 RKQLEKVINDKHED 680 (929)
T ss_pred HHHHHHHhhhhhhH
Confidence 33444445555443
No 117
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=0.0023 Score=60.75 Aligned_cols=189 Identities=15% Similarity=0.187 Sum_probs=124.5
Q ss_pred HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc----hhhhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCCCC
Q 015150 27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP 101 (412)
Q Consensus 27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~----~~~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~~~ 101 (412)
.+-.++..+-...++.....|+.-+..+..--.. ..-.+.+.|.+..++++ .+..+...||++|..+++.++...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 3445555555554565555454444443332222 22345689999999887 578999999999999999887543
Q ss_pred ---cccchHHHHHH-hcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh
Q 015150 102 ---TRSDVVPAYVR-LLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177 (412)
Q Consensus 102 ---~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 177 (412)
.....+|.+.+ ++.=+.-.|-+.++++|..+...-+.......-+-.....+.--+..+++.|.....+++..+..
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 22346777765 55566778999999999998876666544333333333333333445566666666667766655
Q ss_pred hHH--HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc
Q 015150 178 DAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 215 (412)
Q Consensus 178 ~~~--~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~ 215 (412)
+.+ ....+|.+..++...+...-..+.-++..++..+.
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 433 35778999999998888888888888888876654
No 118
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.37 E-value=0.00039 Score=66.50 Aligned_cols=143 Identities=10% Similarity=0.152 Sum_probs=98.5
Q ss_pred HHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHH
Q 015150 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 316 (412)
Q Consensus 238 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 316 (412)
+|....-.++.++-. .+.+...++|++.+-|. .....+|.+..-+++.++..+.. ..+..+|.+...+.|++..+
T Consensus 947 vra~~vvTlakmcLa--h~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~iV 1022 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLA--HDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSVIV 1022 (1529)
T ss_pred HHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchHHH
Confidence 555555555555533 33455668899887665 45677999998889988865533 35779999999999999999
Q ss_pred HHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHh
Q 015150 317 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE 385 (412)
Q Consensus 317 r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~ 385 (412)
|..++..+.++.+. +--.+.-.++-.++..+-|.++.+|.-+=-.++.+.+.-.|..+...+++.+..
T Consensus 1023 Rrqt~ilL~rLLq~-~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ 1090 (1529)
T KOG0413|consen 1023 RRQTIILLARLLQF-GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIA 1090 (1529)
T ss_pred HHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHH
Confidence 99999999888642 111123334444444556889999999999999998776665444444444433
No 119
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.34 E-value=0.00022 Score=61.88 Aligned_cols=178 Identities=20% Similarity=0.192 Sum_probs=101.5
Q ss_pred cCCCchHHHHHHHHhhHHHhhh-ChhhH---HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC----hhhhhhhhHH
Q 015150 232 EDRHWRVRLAIIEYIPLLASQL-GVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG----PDWAMQHIVP 303 (412)
Q Consensus 232 ~d~~~~vr~~~~~~l~~l~~~~-~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~l~ 303 (412)
.++....|.+++..+..+.... -.+.+ ...+.+.+.+.++....+-+..|+++++-++-.+| .+.+.+.+.|
T Consensus 53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~ 132 (309)
T PF05004_consen 53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKP 132 (309)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Confidence 4445556666655554443221 11111 24456666666665555555566677776666655 2334556777
Q ss_pred HHHhhhcCCc--hHHHHHHHHHHHHhccccchhH-HHH---hhHHHHHh--hcC-C---------CCchHHHHHHHHHHH
Q 015150 304 QVLEMINNPH--YLYRMTILQAISLLAPVMGSEI-TCS---QLLPVVIN--ASK-D---------RVPNIKFNVAKVLQS 365 (412)
Q Consensus 304 ~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~-~~~---~il~~l~~--~l~-d---------~~~~vR~~~~~~l~~ 365 (412)
.|...+.|.+ ...|.+++.+++.++-..+.+. -.. ..+..++. ..+ | +++.+..+++.+.+-
T Consensus 133 ~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~l 212 (309)
T PF05004_consen 133 VLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWAL 212 (309)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHH
Confidence 7777777654 4566777777776654333321 111 22331111 111 1 134677777777777
Q ss_pred HhhhhchH---HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150 366 LIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409 (412)
Q Consensus 366 l~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~ 409 (412)
+...+++. ...+..+|.+..++..+|.+||..|.+++.-+.+..
T Consensus 213 Llt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 213 LLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 77766653 233456777777777778888888888888777654
No 120
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.34 E-value=0.00048 Score=63.49 Aligned_cols=259 Identities=12% Similarity=0.091 Sum_probs=120.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHH
Q 015150 108 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI 187 (412)
Q Consensus 108 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 187 (412)
..++...+- +..++..|...+.++.+.++.- .+..+..+..++.|.+..||..++..|..++..- ......+...
T Consensus 26 ~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l--~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~kvaDv 100 (556)
T PF05918_consen 26 KEILDGVKG-SPKEKRLAAQFIPKFFKHFPDL--QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVSKVADV 100 (556)
T ss_dssp HHHHHGGGS--HHHHHHHHHHHHHHHCC-GGG--HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHH
T ss_pred HHHHHHccC-CHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHhHHHHH
Confidence 334444442 4667777777777777665543 2335666777777777777777777777776532 1233456667
Q ss_pred HHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh------hhHHHH
Q 015150 188 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV------GFFDDK 261 (412)
Q Consensus 188 l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~------~~~~~~ 261 (412)
+.+++..+++.....+-++|..+...-....+ ..++..+..- ...+..+|.-+++.+..-...++. +.....
T Consensus 101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL-~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~ 178 (556)
T PF05918_consen 101 LVQLLQTDDPVELDAVKNSLMSLLKQDPKGTL-TGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEF 178 (556)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHH
Confidence 77777766666666666666666654222222 3333333211 234456777776666443333322 223455
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---hhhhhhhhHHHHHhhhc-----C-Cch----HHHHHHHHHHHHhc
Q 015150 262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQVLEMIN-----N-PHY----LYRMTILQAISLLA 328 (412)
Q Consensus 262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~l~~l~~~~~-----~-~~~----~~r~~~~~~l~~l~ 328 (412)
+...+.+.|.|-..+ -...+..+-...+.++ .......+++.+.+-.. + .+. ++..++-.++..++
T Consensus 179 i~~~ikkvL~DVTae-EF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs 257 (556)
T PF05918_consen 179 IVDEIKKVLQDVTAE-EFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFS 257 (556)
T ss_dssp HHHHHHHHCTT--HH-HHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-B
T ss_pred HHHHHHHHHHhccHH-HHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhc
Confidence 666666777763221 1111111111112211 11223445555554321 1 112 23333334444444
Q ss_pred cccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH
Q 015150 329 PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV 374 (412)
Q Consensus 329 ~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~ 374 (412)
.......|...+...++.-+++=....|...++++..++...++..
T Consensus 258 ~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d 303 (556)
T PF05918_consen 258 RGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD 303 (556)
T ss_dssp TTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T
T ss_pred CCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc
Confidence 4444444444444444445555466788899999999998877643
No 121
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=0.00024 Score=65.92 Aligned_cols=156 Identities=20% Similarity=0.149 Sum_probs=106.1
Q ss_pred hhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHh-hcccChHHHHHHHHHHHHHHHhhchhhHHhhH
Q 015150 145 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 223 (412)
Q Consensus 145 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~ 223 (412)
.-|++.+++.|.++-.|...+..+.---.--|.. ..+..+... .+|.+.+||.+|.-+|+-++-. + +..
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn----kair~lLh~aVsD~nDDVrRaAVialGFVl~~-d-----p~~ 589 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN----KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-D-----PEQ 589 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch----hhHHHhhcccccccchHHHHHHHHHheeeEec-C-----hhh
Confidence 4578888999999999998876654322112222 233334444 6788999999999999887643 2 234
Q ss_pred HHHHHH-HhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh--hhh
Q 015150 224 LPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQH 300 (412)
Q Consensus 224 ~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~ 300 (412)
+|.... +.++-++-||..++.+++-.+...|... .+.++..+.+|++.-||+.|+.+++-+.-...+... ...
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e----Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~ 665 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE----AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNG 665 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH----HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHH
Confidence 454444 4556789999999999998888777654 444556668899999999999999988765533211 234
Q ss_pred hHHHHHhhhcCCch
Q 015150 301 IVPQVLEMINNPHY 314 (412)
Q Consensus 301 ~l~~l~~~~~~~~~ 314 (412)
+...+.+.+.|++.
T Consensus 666 frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 666 FRKQLEKVINDKHE 679 (929)
T ss_pred HHHHHHHHhhhhhh
Confidence 55555666666553
No 122
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.31 E-value=1.6e-06 Score=53.95 Aligned_cols=52 Identities=21% Similarity=0.106 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHH
Q 015150 314 YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQS 365 (412)
Q Consensus 314 ~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~ 365 (412)
|.+|..++.+|+.++...+.. .+.+.++|.+..+++|+++.||..++.+|+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 456666666666655444332 3555566666666666666666666666554
No 123
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.31 E-value=0.00093 Score=58.05 Aligned_cols=183 Identities=17% Similarity=0.192 Sum_probs=123.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHH-hhCHHHH---HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC----hhHH
Q 015150 109 AYVRLLRDNEAEVRIAAAGKVTKICR-ILNPELA---IQHILPCVKELSSDSSQHVRSALATVIMGMAPILG----KDAT 180 (412)
Q Consensus 109 ~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~---~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~ 180 (412)
..+..+.+.....|..++..+..+.. ++..+.+ ...+++.+.+.++-....-+..++.+++-++-.+| .+.+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 34445567778889988888877653 3333322 34467777777765555566677788887777765 2445
Q ss_pred HHhhHHHHHHhhcccC--hHHHHHHHHHHHHHHHhhch--hhHHhhHHHHHH---H--Hh-c---------CCCchHHHH
Q 015150 181 IEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIV---E--LA-E---------DRHWRVRLA 241 (412)
Q Consensus 181 ~~~l~~~l~~~l~d~~--~~vr~~~~~~l~~i~~~~~~--~~~~~~~~~~l~---~--~~-~---------d~~~~vr~~ 241 (412)
.+.+.|.+.+.+.|.. ..+|..++.+|+-+.-..+. +.+ ...+..+. . .. . .+++.+..+
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~-~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEET-EELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHH-HHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 5788899999988864 46777888888776544332 222 21222222 1 11 1 124678999
Q ss_pred HHHHhhHHHhhhChhh---HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 015150 242 IIEYIPLLASQLGVGF---FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 292 (412)
Q Consensus 242 ~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 292 (412)
++..++.+...++... ..+..+|.+..+|..++.+||.+|-++++-+.+..
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999988776633 23557889999999999999999999999888754
No 124
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.31 E-value=0.00012 Score=64.32 Aligned_cols=189 Identities=13% Similarity=0.131 Sum_probs=128.7
Q ss_pred HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCCCCc
Q 015150 27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPT 102 (412)
Q Consensus 27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~~~~ 102 (412)
.+...+.++-.++..+-|..|..-|..+...-+- ++....++..+.+.+.| .+...|+.+++.|.+++..-....+
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~ 366 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLF 366 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhh
Confidence 3555666666776667788887756555543222 34456677777777777 8899999999999999875333221
Q ss_pred c--cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHH
Q 015150 103 R--SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180 (412)
Q Consensus 103 ~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 180 (412)
. ...+-.+.+...|.+++|-..|.+..........+..-...+-|.+.. .+...-.++++.+..+++.+..+..
T Consensus 367 DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL 442 (516)
T KOG2956|consen 367 DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEEL 442 (516)
T ss_pred chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHH
Confidence 1 223455556667777777666666655544433333233334455544 3444555677788888888877654
Q ss_pred H---HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH
Q 015150 181 I---EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 219 (412)
Q Consensus 181 ~---~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~ 219 (412)
. ..+.|.+.+..+..+..||+.++.+|-.+...+|.+.+
T Consensus 443 ~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~m 484 (516)
T KOG2956|consen 443 LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEM 484 (516)
T ss_pred HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhh
Confidence 3 57889999999999999999999999999999996554
No 125
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00017 Score=68.11 Aligned_cols=183 Identities=21% Similarity=0.257 Sum_probs=132.2
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHHHhCCC--CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 015150 68 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI 145 (412)
Q Consensus 68 ~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 145 (412)
+......+.|+.+-+|..++..+..+.+.-.+. .....++......+.|++..|--.|+..+..+++..+++ +
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~-----i 803 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED-----I 803 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh-----h
Confidence 444556677888889999999999999854322 234568889999999999999999999999998875544 5
Q ss_pred hhhHHHh-c--cC-CcHHHHHHHHHHHHhcCcccChhHH--HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc---h
Q 015150 146 LPCVKEL-S--SD-SSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---I 216 (412)
Q Consensus 146 ~~~l~~~-~--~d-~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~---~ 216 (412)
+|.+... . ++ ..++.|-.+.+++++++...|+-.+ ...++..+.+..+|++...|.....+++.++.... .
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vs 883 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVS 883 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhh
Confidence 5655542 1 12 2245566666888888877776432 35677778888888888889999999988887754 3
Q ss_pred hhHHhhHHHHHH-HHhcCCCchHHHHHHHHhhHHHhhhChh
Q 015150 217 DLLSQSLLPAIV-ELAEDRHWRVRLAIIEYIPLLASQLGVG 256 (412)
Q Consensus 217 ~~~~~~~~~~l~-~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 256 (412)
+.+ ..++..+. -...|..+-+|++++..+..+....|..
T Consensus 884 d~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d 923 (982)
T KOG4653|consen 884 DFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED 923 (982)
T ss_pred HHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh
Confidence 433 33333333 3446788899999999998888877753
No 126
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.0047 Score=63.74 Aligned_cols=212 Identities=19% Similarity=0.201 Sum_probs=138.4
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHH-HHhccCCchHHHHHHHHhHHHHhhccCch---hhhhhhHHHHHhhccC
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIF-EELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVNFSQD 77 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l-~~l~~~~~~~~r~~a~~~l~~i~~~~~~~---~~~~~l~~~l~~l~~d 77 (412)
|..|-+++++++.++...+...+...+.+.+ .++.+..++..|..-.-+++.+.++.+.. .....-+..++.+.+|
T Consensus 890 p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~D 969 (2067)
T KOG1822|consen 890 PKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATD 969 (2067)
T ss_pred hHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhc
Confidence 7789999999999999888776666666554 44555556666777788899999887653 3333344577888888
Q ss_pred CC-hHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHh-cCCC--hHHHHHHHHHHHH------HHHHhhCHHHH----
Q 015150 78 KS-WRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRL-LRDN--EAEVRIAAAGKVT------KICRILNPELA---- 141 (412)
Q Consensus 78 ~~-~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~-l~d~--~~~vr~~a~~~l~------~l~~~~~~~~~---- 141 (412)
+. +.|+..++.++.-+....++-. .....+..+..+ ++++ ..+++..--.++. .+...++++..
T Consensus 970 s~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~ 1049 (2067)
T KOG1822|consen 970 STSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGD 1049 (2067)
T ss_pred CCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccccCCCCc
Confidence 65 4999999999998887665433 112233333333 3333 3455555555554 55555555411
Q ss_pred -------HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150 142 -------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 213 (412)
Q Consensus 142 -------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~ 213 (412)
....+-.-.-++..+++.+...+..++.++.-+-+.....+.+++.+..++....--.|.+...++-++...
T Consensus 1050 ~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1050 KDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred ccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHH
Confidence 111111111134556888889999988887655555555678999999988887777777777777777554
No 127
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=98.24 E-value=0.00088 Score=62.64 Aligned_cols=370 Identities=13% Similarity=0.135 Sum_probs=198.8
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc-hhhhhhhHHHHHhhccCC-ChHHHHHHHHHHHHHHHHhCCCCc
Q 015150 25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPT 102 (412)
Q Consensus 25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~-~~~~~~l~~~l~~l~~d~-~~~vR~~~~~~l~~l~~~~~~~~~ 102 (412)
.+..++.+...+.++++.||...++.+..+-+++.. ....-.+-.++.++-+.. +..||..++-.+..-...++.+ .
T Consensus 21 L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~-e 99 (501)
T PF13001_consen 21 LDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDE-E 99 (501)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHH-H
Confidence 334444444445566778999999999999988765 333334555555555544 5888888776665444433322 2
Q ss_pred ccchHHHHHHhcCCCh---HHHHHHHHHHHHHHHHhhCH----------H------------HHHHhhhhhHHHhc----
Q 015150 103 RSDVVPAYVRLLRDNE---AEVRIAAAGKVTKICRILNP----------E------------LAIQHILPCVKELS---- 153 (412)
Q Consensus 103 ~~~l~~~l~~~l~d~~---~~vr~~a~~~l~~l~~~~~~----------~------------~~~~~~~~~l~~~~---- 153 (412)
..+++|.+.+.++... ..........+.-+++.... + .....+.+...+..
T Consensus 100 ~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~l~~ 179 (501)
T PF13001_consen 100 RRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDFCDDVFLAPWFSKFLLLQP 179 (501)
T ss_pred HHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcchHHHHHcchhhcccccccc
Confidence 4568888888776321 11222222222222222110 0 00001111111110
Q ss_pred -----------cC-----------------------CcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHH
Q 015150 154 -----------SD-----------------------SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDV 199 (412)
Q Consensus 154 -----------~d-----------------------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 199 (412)
.+ .-.++|..+++.+..-. +. .+..++.+.-...|+..+|
T Consensus 180 ~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~--f~----d~~~~~~~liAsad~~~~V 253 (501)
T PF13001_consen 180 NRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGF--FP----DEERFPPLLIASADSNSSV 253 (501)
T ss_pred ccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcC--CC----cHhHHhheeeEEeCCcchH
Confidence 00 00012222222221111 00 1123333333345666777
Q ss_pred HHHHHHHHHHHHHhhchhhHHhhHHHHHH--HHhc-----CCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC
Q 015150 200 RLNIISKLDQVNQVIGIDLLSQSLLPAIV--ELAE-----DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD 272 (412)
Q Consensus 200 r~~~~~~l~~i~~~~~~~~~~~~~~~~l~--~~~~-----d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 272 (412)
-..+-..|.++...+....+.+.++..+. ..-. -.++.+|..++..+ ++........+..+.++...+.+
T Consensus 254 ~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L---~kS~~Aa~~~~~~~~i~~~~l~~ 330 (501)
T PF13001_consen 254 SDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLL---SKSVIAATSFPNILQIVFDGLYS 330 (501)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHH---HHhHHHHhCCccHHHHHhccccC
Confidence 77777777777655554444445554444 1111 12456666555444 33332222335567777777777
Q ss_pred c--hhHHHHHHHHHH---HHHHHHhChhhh---hhhhHHHHHhhhc--------CCchHHHHHHHHHHHHhccccchhH-
Q 015150 273 K--VYSIRDAAANNV---KRLAEEFGPDWA---MQHIVPQVLEMIN--------NPHYLYRMTILQAISLLAPVMGSEI- 335 (412)
Q Consensus 273 ~--~~~vr~~a~~~l---~~l~~~~~~~~~---~~~~l~~l~~~~~--------~~~~~~r~~~~~~l~~l~~~~~~~~- 335 (412)
+ +..+|..+++.+ ......+++... .+.++..+..... ..+...|..+.+++|.++...+.-.
T Consensus 331 ~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~ 410 (501)
T PF13001_consen 331 DNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS 410 (501)
T ss_pred CccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccc
Confidence 7 678888888888 777776665432 2233333333332 2346799999999999998766542
Q ss_pred HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH-----HHhhHHH-HHHhhcCCCCccHHHHHHHHHHH
Q 015150 336 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV-----VEKSIRP-CLVELSEDPDVDVRFFATQALQS 404 (412)
Q Consensus 336 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~-----~~~~i~~-~l~~l~~d~~~~vr~~a~~al~~ 404 (412)
-.-.++..++..+.++.+++|.++-.+|+.+...+.... .....+. .+.....+....+|..|.+-...
T Consensus 411 ~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~ 485 (501)
T PF13001_consen 411 KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANA 485 (501)
T ss_pred ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 123567777777889999999999999999987765421 1112222 22234455666677777665443
No 128
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.22 E-value=2.7e-06 Score=52.99 Aligned_cols=53 Identities=26% Similarity=0.230 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHh
Q 015150 353 PNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSK 405 (412)
Q Consensus 353 ~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~ 405 (412)
|.||..++.+|+.+....+.. .+.+.++|.|..+++|++++||..|+.+|+.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 579999999999977554442 46789999999999999999999999999865
No 129
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.00033 Score=64.71 Aligned_cols=145 Identities=24% Similarity=0.221 Sum_probs=101.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH-------HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc----c
Q 015150 107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-------LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI----L 175 (412)
Q Consensus 107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~----~ 175 (412)
=|.+.+.++-++..||..|+..+..+....+++ ...+.=...+.++++|+.+.||..+..-+..+... +
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 355666778888899999888888776655554 22333445667788899999998887766655432 3
Q ss_pred ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHh
Q 015150 176 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 251 (412)
Q Consensus 176 ~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 251 (412)
++....+-+-..+-.+..|...+||.++.+.+..++..-......+.++|.+...+.|+..+||.+++..+..+-.
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 4444444444445556677778899888888888876644444557788888888888889999988887766543
No 130
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=0.0041 Score=63.16 Aligned_cols=327 Identities=14% Similarity=0.076 Sum_probs=165.4
Q ss_pred hccCCChHHHHHHHHHHHHHHHHhCCCCcc-----cchHHHHHH---hcCCC---hHHHHHHHHHHHHHHHH-----hhC
Q 015150 74 FSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVR---LLRDN---EAEVRIAAAGKVTKICR-----ILN 137 (412)
Q Consensus 74 l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~---~l~d~---~~~vr~~a~~~l~~l~~-----~~~ 137 (412)
+++++|..||...+-|++.|.+...++.-. .+++..+.. .+.|. ...-+..-++.+..+.- -..
T Consensus 58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d 137 (1266)
T KOG1525|consen 58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED 137 (1266)
T ss_pred HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence 567899999999999999999987765421 223333332 23443 22223333333333220 012
Q ss_pred HHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHH-HHHHhhc---ccChHHHHHHHHHHHHHHHh
Q 015150 138 PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP-IFLSLLK---DEFPDVRLNIISKLDQVNQV 213 (412)
Q Consensus 138 ~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~-~l~~~l~---d~~~~vr~~~~~~l~~i~~~ 213 (412)
.+.....++..+.....+..+.---.....+..+.... +.+...++. .|.+++. |..++-+.-+-..+...+..
T Consensus 138 ~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~ 215 (1266)
T KOG1525|consen 138 CQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADN 215 (1266)
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhh
Confidence 23444555566666664433321111222222222111 112223333 3334443 33334444444444444433
Q ss_pred hchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC
Q 015150 214 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 293 (412)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 293 (412)
+..+ +.+.+...+..... ..-.++...-+.+-.+.... ++ ..-.+.|.+..-|...+..+|..|...+|.+....+
T Consensus 216 ~~~~-i~~f~~~~~~~~~s-~~~~~~~~~he~i~~L~~~~-p~-ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~ 291 (1266)
T KOG1525|consen 216 LEDT-IANFLNSCLTEYKS-RQSSLKIKYHELILELWRIA-PQ-LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD 291 (1266)
T ss_pred hchh-HHHHHHHHHhhccc-cccchhhHHHHHHHHHHHhh-HH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch
Confidence 3211 11122222221111 11112222222222222211 11 223377888877888889999999999999887554
Q ss_pred hhhh--hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc
Q 015150 294 PDWA--MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 371 (412)
Q Consensus 294 ~~~~--~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 371 (412)
.... .+.+...++..+.|.+..+|..+++....+.-..+.- .......+.....|.++.+|....-++......--
T Consensus 292 ~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~--~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~ 369 (1266)
T KOG1525|consen 292 SQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI--AKASTILLALRERDLDEDVRVRTQVVIVACDVMKF 369 (1266)
T ss_pred hhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh--hhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHh
Confidence 4333 3557777888889999999999999998876443221 12222222222344445555333222211100000
Q ss_pred hHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150 372 QSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 372 ~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 408 (412)
.-.+.+.++..+...+.|.-+.||..|+..+..+.+.
T Consensus 370 ~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 370 KLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 0012223777777788999999999999999999884
No 131
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.0015 Score=61.86 Aligned_cols=152 Identities=13% Similarity=0.147 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhccCC-chHHHHHHHHhHHHHhhccCch---hhhhhhHHHHHh-hccCCChHHHHHHHHHHHHHHHHhCC
Q 015150 25 KSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGP 99 (412)
Q Consensus 25 ~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~i~~~~~~~---~~~~~l~~~l~~-l~~d~~~~vR~~~~~~l~~l~~~~~~ 99 (412)
.+.+.|.+..+++++ +.++-..||+++..+++-+|+. -.....+|.++. +..-.--.|-+.++++|..|.+..+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 456788888888766 6788899999999999998873 123347777765 34445567889999999999987665
Q ss_pred CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHH--HHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC
Q 015150 100 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG 176 (412)
Q Consensus 100 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 176 (412)
.....--+-.+..++.==.-.++..|+....+.++.+.++. +.-..+|.+..+++..+..+-..++-++..++..+.
T Consensus 289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 54443333334443332235678888888899999887763 345578999999988888888889999988887663
No 132
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.17 E-value=0.0016 Score=59.21 Aligned_cols=172 Identities=16% Similarity=0.119 Sum_probs=119.3
Q ss_pred HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch--hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhH
Q 015150 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 258 (412)
Q Consensus 181 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 258 (412)
.+.++-++.+.....+..||...++-+..+...+++ +.+.+.++..+.+.+-|..+.||..++.++..+-+.-+.+.
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee- 167 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE- 167 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH-
Confidence 344555556666777899999999999999888885 56667777888888889999999999999887776554432
Q ss_pred HHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHH-HHHHHHHHHHhccccchhHH
Q 015150 259 DDKLGALCMQW-LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY-RMTILQAISLLAPVMGSEIT 336 (412)
Q Consensus 259 ~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~-r~~~~~~l~~l~~~~~~~~~ 336 (412)
..+..++... -+|++.+||..|+..+.. .+.-.|.+++...|-+-.. |...-+++..+......+ .
T Consensus 168 -n~~~n~l~~~vqnDPS~EVRr~allni~v----------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls-i 235 (885)
T COG5218 168 -NRIVNLLKDIVQNDPSDEVRRLALLNISV----------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS-I 235 (885)
T ss_pred -HHHHHHHHHHHhcCcHHHHHHHHHHHeee----------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc-c
Confidence 1233333333 369999999998776532 2445688888888876444 445566777665433222 2
Q ss_pred HHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150 337 CSQLLPVVINASKDRVPNIKFNVAKVLQSL 366 (412)
Q Consensus 337 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 366 (412)
.++++ .+--.+.|....||.++..++..-
T Consensus 236 ~kri~-l~ewgl~dRe~sv~~a~~d~ia~~ 264 (885)
T COG5218 236 DKRIL-LMEWGLLDREFSVKGALVDAIASA 264 (885)
T ss_pred cceeh-hhhhcchhhhhhHHHHHHHHHHHH
Confidence 34444 445568899999999999888643
No 133
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.0014 Score=60.76 Aligned_cols=145 Identities=16% Similarity=0.133 Sum_probs=109.1
Q ss_pred hHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhh-------HHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhh----
Q 015150 184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-------LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ---- 252 (412)
Q Consensus 184 l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~-------~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~---- 252 (412)
.-|.+.+.++-.+.+||.+|+..+-.+.+..+++. +.+.-...+..+++|+.|.||..++..+..+...
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 34778888888899999998888777766655442 3445566778889999999999887766655443
Q ss_pred hChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhc
Q 015150 253 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 328 (412)
Q Consensus 253 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~ 328 (412)
+++....+-+..++-.+-.|...+||-+.+..+..++.+-......+.++|.+-..+.|++.+||.++++.+..+-
T Consensus 255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 3555555545555556667888899999999998888654444556788898888999999999999999887763
No 134
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.13 E-value=0.0024 Score=53.95 Aligned_cols=143 Identities=10% Similarity=0.031 Sum_probs=78.6
Q ss_pred HHHhccCCchHHHHHHHHhHHHHhhccCchhh----hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC-CCcccch
Q 015150 32 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDC----VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRSDV 106 (412)
Q Consensus 32 l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~----~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~-~~~~~~l 106 (412)
+...+.++++.+|..|+..|+.+...++++.. ...+..++..-+.| +..-..++.++..+...-.- ......+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~~~~~~~~~~~i 81 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKMKNFSPESAVKI 81 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhCcCCChhhHHHH
Confidence 34557888899999999999999999886433 34466677766654 33333447777777632110 1111223
Q ss_pred HHHHHHhcC--CChHHHHHHHHHHHHHHHHhhCHHH--HHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcCcccC
Q 015150 107 VPAYVRLLR--DNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILG 176 (412)
Q Consensus 107 ~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~ 176 (412)
+..+.+... .--...|..+.+.+..+.+...... ....++..+.+.+ ..++|+.-..+.+.+..+...+.
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 333333222 2235678888888877766543221 1122333333333 34566555555555555444433
No 135
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=98.10 E-value=0.0027 Score=59.47 Aligned_cols=342 Identities=15% Similarity=0.126 Sum_probs=180.2
Q ss_pred hhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh--HHHHHHHHHHHHHHHHhhCHHHHH
Q 015150 65 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE--AEVRIAAAGKVTKICRILNPELAI 142 (412)
Q Consensus 65 ~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~ 142 (412)
...+|.++..+.+++..||...++.+.++...+.......-=+..+.+..++++ ..||..++--+..-.+.++.++-
T Consensus 22 ~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e~- 100 (501)
T PF13001_consen 22 DKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEER- 100 (501)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHHH-
Confidence 334555555556678899999999999998887764433323444555555554 78888887666554455544433
Q ss_pred HhhhhhHHHhccCCcH---HH---HHHHHHHHHhcCcccCh-----h--------------HHHHhhHHHHHHhhc----
Q 015150 143 QHILPCVKELSSDSSQ---HV---RSALATVIMGMAPILGK-----D--------------ATIEQLLPIFLSLLK---- 193 (412)
Q Consensus 143 ~~~~~~l~~~~~d~~~---~v---r~~~~~~l~~l~~~~~~-----~--------------~~~~~l~~~l~~~l~---- 193 (412)
..++|.+.+.++.... .. ....+..+..+...... + .....+.+.+...+.
T Consensus 101 ~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~l~~~ 180 (501)
T PF13001_consen 101 RELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDFCDDVFLAPWFSKFLLLQPN 180 (501)
T ss_pred HHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcchHHHHHcchhhccccccccc
Confidence 3467777776653211 11 11111122222211100 0 001122222222210
Q ss_pred ----------ccChHHHHHHHH-------------HHH----HHHHhhchhhH-HhhHHHHHHHHhcCCCchHHHHHHHH
Q 015150 194 ----------DEFPDVRLNIIS-------------KLD----QVNQVIGIDLL-SQSLLPAIVELAEDRHWRVRLAIIEY 245 (412)
Q Consensus 194 ----------d~~~~vr~~~~~-------------~l~----~i~~~~~~~~~-~~~~~~~l~~~~~d~~~~vr~~~~~~ 245 (412)
.+.+-.-..... .+. .+.+.+....+ ....++.++-...|++.+|-..+-..
T Consensus 181 ~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsad~~~~V~~~ae~~ 260 (501)
T PF13001_consen 181 RAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERFPPLLIASADSNSSVSDRAEDL 260 (501)
T ss_pred cccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEeCCcchHHHHHHHH
Confidence 000000000000 000 00111111111 01233333334466777777777777
Q ss_pred hhHHHhhhChhhHHHHHHHHHHH--Hhc-----CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCC--chHH
Q 015150 246 IPLLASQLGVGFFDDKLGALCMQ--WLK-----DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP--HYLY 316 (412)
Q Consensus 246 l~~l~~~~~~~~~~~~l~~~l~~--~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~--~~~~ 316 (412)
+..+...+....+.+.+..++.. .-. --++.+|...+..|.+-.... ...+.++..+...+..+ +.+.
T Consensus 261 LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa---~~~~~~~~i~~~~l~~~~~~~kl 337 (501)
T PF13001_consen 261 LKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA---TSFPNILQIVFDGLYSDNTNSKL 337 (501)
T ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH---hCCccHHHHHhccccCCcccccc
Confidence 77666665555555556655552 110 124556666655555433211 11234555555555555 6789
Q ss_pred HHHHHHHH---HHhccccchh---HHHHhhHHHHHhhcC--------CCCchHHHHHHHHHHHHhhhhchHH-HHhhHHH
Q 015150 317 RMTILQAI---SLLAPVMGSE---ITCSQLLPVVINASK--------DRVPNIKFNVAKVLQSLIPIVDQSV-VEKSIRP 381 (412)
Q Consensus 317 r~~~~~~l---~~l~~~~~~~---~~~~~il~~l~~~l~--------d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~i~~ 381 (412)
|..+++.+ ......++.. .+.+.++......++ ......|..+..+||.+++....-. -.-.++.
T Consensus 338 k~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~ 417 (501)
T PF13001_consen 338 KSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIE 417 (501)
T ss_pred chhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHH
Confidence 99999999 7777766654 233344444444442 2356789999999999988755432 1123455
Q ss_pred HHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150 382 CLVELSEDPDVDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 382 ~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 410 (412)
.+-..+.++++++|....+|+..+..+..
T Consensus 418 ~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 418 FLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred HHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 55554588999999999999999988763
No 136
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=0.016 Score=59.16 Aligned_cols=351 Identities=13% Similarity=0.114 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHh---hh-hhhHHHHHHHHHH-----hccCCchHHHHHHHHhHHHHhhccCch-----hhhhhhHHHH
Q 015150 6 RSAATNLGKFAATV---EA-AHLKSEIMSIFEE-----LTQDDQDSVRLLAVEGCGALGKLLEPQ-----DCVAHILPVI 71 (412)
Q Consensus 6 ~~a~~~l~~~~~~~---~~-~~~~~~l~~~l~~-----l~~~~~~~~r~~a~~~l~~i~~~~~~~-----~~~~~l~~~l 71 (412)
...++-|..+...+ .+ +.....+.|+... ++++++-.+|...+-++..+.+-..|+ ....+++.++
T Consensus 20 ~ell~rLk~l~~~l~~~~qd~~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~ 99 (1266)
T KOG1525|consen 20 DELLKRLKKLANCLASLDQDNLDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLI 99 (1266)
T ss_pred HHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence 33444444444433 22 2344556665544 456777789998888888888766542 2334444444
Q ss_pred Hh---hccC---CChHHHHHHHHHHHHHHHHhC--CCCcccc----hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH
Q 015150 72 VN---FSQD---KSWRVRYMVANQLYELCEAVG--PEPTRSD----VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE 139 (412)
Q Consensus 72 ~~---l~~d---~~~~vR~~~~~~l~~l~~~~~--~~~~~~~----l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 139 (412)
.. .+.| |...-+...++.+..+. .+- .....++ ++..+...+.+..+.--......+..+... .+
T Consensus 100 ~~q~~gL~d~~sp~f~r~~~lletl~~~k-~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e--~d 176 (1266)
T KOG1525|consen 100 LSQFSGLGDVESPYFKRYFYLLETLAKVK-FCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITE--ED 176 (1266)
T ss_pred HHHHhhccCCCCcchhhHHHHHHHHHHhH-HHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh--hc
Confidence 43 2333 44455656666665554 211 1112233 444444444443332222222222222111 11
Q ss_pred HHHHhhhhhHHH-hc---cCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhh-ccc--ChHHHHHHHHHHHHHHH
Q 015150 140 LAIQHILPCVKE-LS---SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL-KDE--FPDVRLNIISKLDQVNQ 212 (412)
Q Consensus 140 ~~~~~~~~~l~~-~~---~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~--~~~vr~~~~~~l~~i~~ 212 (412)
.....++..++. ++ .|....-+..+-..+..++..+.. .+-..+.+.+ .+. ...++...-.-+-.+-.
T Consensus 177 ~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~-----~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~ 251 (1266)
T KOG1525|consen 177 TVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLED-----TIANFLNSCLTEYKSRQSSLKIKYHELILELWR 251 (1266)
T ss_pred cchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhch-----hHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 222233333332 22 333444444444444444433221 1112222221 111 11111111111111111
Q ss_pred hhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhH--HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 015150 213 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 290 (412)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 290 (412)
. .++. .-.++|.+..-+...+..+|..+++.++.+....+.... .+.++..++..+.|...+||...++....++.
T Consensus 252 ~-~p~l-l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~ 329 (1266)
T KOG1525|consen 252 I-APQL-LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLL 329 (1266)
T ss_pred h-hHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHh
Confidence 1 1222 256778888878888899999999999999876655444 56688888999999999999999999888876
Q ss_pred HhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhcc-ccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh
Q 015150 291 EFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP-VMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 369 (412)
Q Consensus 291 ~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~-~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 369 (412)
......-...+.-.+... |.++.+|....-.+..+.. .+....... ++..+.+.+.|+.+.||..|+..|..+++.
T Consensus 330 ~~~~~~~~~~~~~~l~~~--~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 330 NNPSIAKASTILLALRER--DLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred cCchhhhHHHHHHHHHhh--cCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 532211111222233333 3444444433322222110 011112233 777778889999999999999999999874
No 137
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.03 E-value=0.0071 Score=55.89 Aligned_cols=303 Identities=16% Similarity=0.092 Sum_probs=174.8
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC----------cccchHH--HHHHhcCCChHHHHHHHHHHHHHHHH
Q 015150 67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----------TRSDVVP--AYVRLLRDNEAEVRIAAAGKVTKICR 134 (412)
Q Consensus 67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----------~~~~l~~--~l~~~l~d~~~~vr~~a~~~l~~l~~ 134 (412)
+...+.-+...-+..+|.++..++......+.++. ....+.+ .+.++.+|++..-|..++.++..+..
T Consensus 182 i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~ 261 (678)
T KOG1293|consen 182 ILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLR 261 (678)
T ss_pred chhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHh
Confidence 34444444444567889999998884222221111 1123344 45678889999999888888877655
Q ss_pred hhCHH---HHHH--------hhhhh-HHHhccCCcHHHHHHHHHHHHh---cCcccChhHHHHhhHHHHHHh------hc
Q 015150 135 ILNPE---LAIQ--------HILPC-VKELSSDSSQHVRSALATVIMG---MAPILGKDATIEQLLPIFLSL------LK 193 (412)
Q Consensus 135 ~~~~~---~~~~--------~~~~~-l~~~~~d~~~~vr~~~~~~l~~---l~~~~~~~~~~~~l~~~l~~~------l~ 193 (412)
.-..+ .+.. .+..+ -..+..|+-+.--...+..+.. +++............+...++ ++
T Consensus 262 ~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~ 341 (678)
T KOG1293|consen 262 KSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLA 341 (678)
T ss_pred ccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHh
Confidence 33111 1100 11111 1122344444322222222222 222222221111222222222 23
Q ss_pred ccChHHHHHHHHHHHHH---HHhhchhh----HHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHH
Q 015150 194 DEFPDVRLNIISKLDQV---NQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLG 263 (412)
Q Consensus 194 d~~~~vr~~~~~~l~~i---~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~ 263 (412)
...+..|.-++...... +...+... ........+.......+...+.+++.++..+++.... ..-..++.
T Consensus 342 a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~ 421 (678)
T KOG1293|consen 342 ASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVA 421 (678)
T ss_pred hcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhH
Confidence 34455565554432222 11122111 1111122222233345677888888888887766521 12234566
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh----HH
Q 015150 264 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE----IT 336 (412)
Q Consensus 264 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~----~~ 336 (412)
..+++++.|++..|...++.++..++-.+++ .++....+..+.....++...+|..+++++..+.-....+ ++
T Consensus 422 ~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~ 501 (678)
T KOG1293|consen 422 QPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLL 501 (678)
T ss_pred HHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 6678888999999999999999999877764 4556778889999999999999999999999987554443 23
Q ss_pred HHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh
Q 015150 337 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 369 (412)
Q Consensus 337 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 369 (412)
.+.-...+..+.+|+.+.|...++..+.++...
T Consensus 502 ~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 502 AKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 334455677888999999999999999888643
No 138
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.02 E-value=0.0058 Score=51.64 Aligned_cols=222 Identities=14% Similarity=0.150 Sum_probs=127.0
Q ss_pred hccCCcHHHHHHHHHHHHhcCcccChhHH----HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc--hhhHHhhHHH
Q 015150 152 LSSDSSQHVRSALATVIMGMAPILGKDAT----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLP 225 (412)
Q Consensus 152 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~--~~~~~~~~~~ 225 (412)
.+.++++.+|..+...+..+...++++.. .+-++..+.+-+.| ...+. .++.++..+.+.-. .+. ...++.
T Consensus 7 ~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~-~~l~gl~~L~~~~~~~~~~-~~~i~~ 83 (262)
T PF14500_consen 7 YLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQ-PALKGLLALVKMKNFSPES-AVKILR 83 (262)
T ss_pred hhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHH-HHHHHHHHHHhCcCCChhh-HHHHHH
Confidence 34455555555555555555544443221 23455566666644 23333 33666666553322 222 123333
Q ss_pred HHHHHhc--CCCchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHhChhhhhhh
Q 015150 226 AIVELAE--DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300 (412)
Q Consensus 226 ~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 300 (412)
.+.+-.. .-....|..+.+.+..+........ ..+.++..+++.+ +..+|.--..+++.+..+...+....+.+.
T Consensus 84 ~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~ 163 (262)
T PF14500_consen 84 SLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAED 163 (262)
T ss_pred HHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 3332111 2234578888888877776543221 2233444555544 356777777888888888887765555566
Q ss_pred hHHHHHhhh--------cCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150 301 IVPQVLEMI--------NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 372 (412)
Q Consensus 301 ~l~~l~~~~--------~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 372 (412)
++..+..++ +|+.-..|+.....+..... +...|.+..+|.++.-|.+..+.+|.-++++|......+|.
T Consensus 164 lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 164 LFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 665555433 23322344444444433321 22347789999999999999999999999999999999988
Q ss_pred HHHHhh
Q 015150 373 SVVEKS 378 (412)
Q Consensus 373 ~~~~~~ 378 (412)
....+.
T Consensus 242 ~~~~~~ 247 (262)
T PF14500_consen 242 DSLSPH 247 (262)
T ss_pred HHHHHH
Confidence 644433
No 139
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=98.02 E-value=1.1e-05 Score=43.15 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=12.9
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHH
Q 015150 68 LPVIVNFSQDKSWRVRYMVANQLYELCE 95 (412)
Q Consensus 68 ~~~l~~l~~d~~~~vR~~~~~~l~~l~~ 95 (412)
+|.+.++++|++|+||.+++.+|+.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444443
No 140
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=98.01 E-value=1.1e-05 Score=43.07 Aligned_cols=30 Identities=37% Similarity=0.475 Sum_probs=21.2
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRI 135 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 135 (412)
++|.+.++++|++++||.+|+.+++.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467777777777777777777777777664
No 141
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.01 E-value=0.011 Score=53.93 Aligned_cols=212 Identities=17% Similarity=0.141 Sum_probs=130.1
Q ss_pred hhhHHHHHHHHHHhcc-CCchHHHHHHHHhHHHHhhccCc-----hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 015150 22 AHLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEP-----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 95 (412)
Q Consensus 22 ~~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~i~~~~~~-----~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~ 95 (412)
+.+...++..+...+. ..++.+-...++.+..+..+.-+ +......+..++.....++..||..+++.|+.+..
T Consensus 41 ~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d 120 (885)
T COG5218 41 HEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSD 120 (885)
T ss_pred HhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH
Confidence 3344445555444332 22233334445666666664322 23344455566677788999999999999999988
Q ss_pred HhCC--CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcC
Q 015150 96 AVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS-SDSSQHVRSALATVIMGMA 172 (412)
Q Consensus 96 ~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~ 172 (412)
..+. +...+-++..+.+.+-|.++.||..|+.+|..+-+--+.+. +.+...+...+ +|++.+||..+...+..
T Consensus 121 ~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~~n~l~~~vqnDPS~EVRr~allni~v-- 196 (885)
T COG5218 121 VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRIVNLLKDIVQNDPSDEVRRLALLNISV-- 196 (885)
T ss_pred hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHhcCcHHHHHHHHHHHeee--
Confidence 7765 33445567777778889999999999999988765444332 12333444444 68999999988654432
Q ss_pred cccChhHHHHhhHHHHHHhhcccChHHHHHHH-HHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhh
Q 015150 173 PILGKDATIEQLLPIFLSLLKDEFPDVRLNII-SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 247 (412)
Q Consensus 173 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~-~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~ 247 (412)
.+.-.|.+..-..|-+...|.-.. ..|++++.... ..+.+.++ .+.--+.|.+..+|.++...+.
T Consensus 197 --------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~-lsi~kri~-l~ewgl~dRe~sv~~a~~d~ia 262 (885)
T COG5218 197 --------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKS-LSIDKRIL-LMEWGLLDREFSVKGALVDAIA 262 (885)
T ss_pred --------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhh-ccccceeh-hhhhcchhhhhhHHHHHHHHHH
Confidence 234567788878887766665433 35555543311 11112222 3444567777788887776653
No 142
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.00081 Score=65.06 Aligned_cols=226 Identities=17% Similarity=0.171 Sum_probs=149.5
Q ss_pred CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHH---HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc--
Q 015150 101 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA---IQHILPCVKELSSDSSQHVRSALATVIMGMAPIL-- 175 (412)
Q Consensus 101 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-- 175 (412)
...++=+|.+.+.+-+ ...|-.|+..|++|...-+-... .-.|+|+++++++.+-.+.|...+-...+|...-
T Consensus 468 r~PPeQLPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~S 545 (1387)
T KOG1517|consen 468 RTPPEQLPIVLQVLLS--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPS 545 (1387)
T ss_pred CCChHhcchHHHHHHH--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCch
Confidence 3444556666665443 55688888888888765433321 2248999999999999999998887777765321
Q ss_pred -ChhHHHHhhHHHHHHhhcc-c--ChHHHHHHHHHHHHHHHhhc---hhhHHhhHHHHHHHHhcCC-CchHHHHHHHHhh
Q 015150 176 -GKDATIEQLLPIFLSLLKD-E--FPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIP 247 (412)
Q Consensus 176 -~~~~~~~~l~~~l~~~l~d-~--~~~vr~~~~~~l~~i~~~~~---~~~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~ 247 (412)
..+.+.+..-.++.+.+.+ . +++-|..++=.|..|...+. ..-+...++..-...++|+ .|=.|+=++-+|+
T Consensus 546 CQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG 625 (1387)
T KOG1517|consen 546 CQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLG 625 (1387)
T ss_pred hHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 1122222222344555555 2 35888888888888887754 2334556777777777884 7888998999999
Q ss_pred HHHhhhChhhH---HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh------------------hhhhhhHH---
Q 015150 248 LLASQLGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD------------------WAMQHIVP--- 303 (412)
Q Consensus 248 ~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------------------~~~~~~l~--- 303 (412)
.+-+.+....+ .......+...|.|+.++||.+|+-+|+.++.....+ ...+..++
T Consensus 626 ~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~ 705 (1387)
T KOG1517|consen 626 RLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGL 705 (1387)
T ss_pred HHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhH
Confidence 88665543222 1234455677799999999999999999999863110 00122333
Q ss_pred -HHHhhhcCCchHHHHHHHHHHHHhc
Q 015150 304 -QVLEMINNPHYLYRMTILQAISLLA 328 (412)
Q Consensus 304 -~l~~~~~~~~~~~r~~~~~~l~~l~ 328 (412)
.+....+|.+.-+|...+.++..+.
T Consensus 706 ~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 706 MSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHH
Confidence 4566778888888888888887765
No 143
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.95 E-value=0.027 Score=59.98 Aligned_cols=304 Identities=11% Similarity=0.104 Sum_probs=175.9
Q ss_pred HHHHHHHhHHHHhhccCc------hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC------cccchHHHH
Q 015150 43 VRLLAVEGCGALGKLLEP------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP------TRSDVVPAY 110 (412)
Q Consensus 43 ~r~~a~~~l~~i~~~~~~------~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~------~~~~l~~~l 110 (412)
-|..++.-+..++.+.-. ...+..+-+.+.+...+++..++..++..|..++..+-... +..+++..+
T Consensus 1108 pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1108 PRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred CchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 477777777777766433 12344455566666567778899999999988887655321 234566666
Q ss_pred HHhc-CCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc-cC---h--hHHH
Q 015150 111 VRLL-RDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI-LG---K--DATI 181 (412)
Q Consensus 111 ~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~-~~---~--~~~~ 181 (412)
...+ +..+.+||...++++..+....... .....++..+.....++++.+-..+.+.+..+... ++ . ....
T Consensus 1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F 1267 (1780)
T PLN03076 1188 VIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF 1267 (1780)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH
Confidence 5543 4567799999999999887765443 12233555555556677777777787777665432 21 1 1122
Q ss_pred HhhHHHHHHhhccc-ChHHHHHHHHHHHHHHHhhc-----------------------------------hhhHHhhHHH
Q 015150 182 EQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIG-----------------------------------IDLLSQSLLP 225 (412)
Q Consensus 182 ~~l~~~l~~~l~d~-~~~vr~~~~~~l~~i~~~~~-----------------------------------~~~~~~~~~~ 225 (412)
..++..+..+.+.. +.++-..++..|..++..+- .+......+|
T Consensus 1268 ~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p 1347 (1780)
T PLN03076 1268 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP 1347 (1780)
T ss_pred HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH
Confidence 35555665555432 24444445554443322220 0011122344
Q ss_pred HH---HHHhcCCCchHHHHHHHHhhHHHhhhChh----h----HHHHHHHHHHHHhc----------------------C
Q 015150 226 AI---VELAEDRHWRVRLAIIEYIPLLASQLGVG----F----FDDKLGALCMQWLK----------------------D 272 (412)
Q Consensus 226 ~l---~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~----~~~~l~~~l~~~l~----------------------d 272 (412)
.+ .++..|+...||..++..|-.+....|.. . +...+.|++-.+-. +
T Consensus 1348 LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e 1427 (1780)
T PLN03076 1348 LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELD 1427 (1780)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchh
Confidence 44 45578999999999999887777666643 2 22345555433210 1
Q ss_pred chhHHHHHHHHHHHHHHHHhCh-----hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHH
Q 015150 273 KVYSIRDAAANNVKRLAEEFGP-----DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVV 344 (412)
Q Consensus 273 ~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l 344 (412)
...++.+....++..++..+.. ....+.++..+......++..+-..+..++..+....|.. ..+..+...+
T Consensus 1428 ~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~ 1507 (1780)
T PLN03076 1428 QDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSL 1507 (1780)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 1223556666666655554432 1123445555556667778787788888888887665543 2344444444
Q ss_pred Hh
Q 015150 345 IN 346 (412)
Q Consensus 345 ~~ 346 (412)
.+
T Consensus 1508 ~~ 1509 (1780)
T PLN03076 1508 KE 1509 (1780)
T ss_pred HH
Confidence 33
No 144
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.95 E-value=0.0015 Score=63.60 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=95.0
Q ss_pred HHHHHHHHhcC----CCchHHHHHHHHhhHHHhhhChh----------------hHHHHHHHHHHHHhcCchhHHHHHHH
Q 015150 223 LLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVG----------------FFDDKLGALCMQWLKDKVYSIRDAAA 282 (412)
Q Consensus 223 ~~~~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~~~----------------~~~~~l~~~l~~~l~d~~~~vr~~a~ 282 (412)
++..+..+++. .++.++.+++-.++.+....... .+.+.+...+.......+.+-+..++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 34444444433 34567777777777766543211 12334444444445566677888888
Q ss_pred HHHHHHHHHhChhhhhhhhHHHHHhhhcCC---chHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHH
Q 015150 283 NNVKRLAEEFGPDWAMQHIVPQVLEMINNP---HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV 359 (412)
Q Consensus 283 ~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~---~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~ 359 (412)
++||.+.. ...++.+...+.+. ...+|.+|+.++..+...+... ..+.++|.+.+ ....+++|.+|
T Consensus 512 kaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-v~~~l~~I~~n--~~e~~EvRiaA 580 (618)
T PF01347_consen 512 KALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK-VREILLPIFMN--TTEDPEVRIAA 580 (618)
T ss_dssp HHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH-HHHHHHHHHH---TTS-HHHHHHH
T ss_pred HHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH-HHHHHHHHhcC--CCCChhHHHHH
Confidence 88887642 34667777777665 5789999999999886554332 45555555554 23457899999
Q ss_pred HHHHHHHhhhhchHHHHhhHHHHHHh-hcCCCCccHHHHHHHHH
Q 015150 360 AKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFATQAL 402 (412)
Q Consensus 360 ~~~l~~l~~~~~~~~~~~~i~~~l~~-l~~d~~~~vr~~a~~al 402 (412)
...|-..-+. ..++..+.. +-.+++..|+..+...|
T Consensus 581 ~~~lm~~~P~-------~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 581 YLILMRCNPS-------PSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHT----------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHhcCCC-------HHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 8877765331 223333333 56899999998887765
No 145
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.91 E-value=0.0082 Score=52.35 Aligned_cols=213 Identities=15% Similarity=0.127 Sum_probs=108.6
Q ss_pred hcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh-----------hHHH
Q 015150 192 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-----------FFDD 260 (412)
Q Consensus 192 l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-----------~~~~ 260 (412)
++..++.+|..+++++|-.+-. +. ......++.+...++..+..+|..+++++-.+....|.. ....
T Consensus 36 v~~~~~~vR~~al~cLGl~~Ll-d~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~ 113 (298)
T PF12719_consen 36 VQSSDPAVRELALKCLGLCCLL-DK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSK 113 (298)
T ss_pred hcCCCHHHHHHHHHHHHHHHHh-Ch-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHh
Confidence 3344445555555555444322 11 111233333433333334455555555444444443322 1234
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhc----CCchHHHHHHHHHHHHhccccch--h
Q 015150 261 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN----NPHYLYRMTILQAISLLAPVMGS--E 334 (412)
Q Consensus 261 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~----~~~~~~r~~~~~~l~~l~~~~~~--~ 334 (412)
.+..++.+.+.+.++++|..|++.+.++.-.-.... ...++..+.-.+- .++.++|++.-.++..++..-.. +
T Consensus 114 ~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~ 192 (298)
T PF12719_consen 114 SLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQE 192 (298)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHH
Confidence 577778888888888899999999888774321110 1234443333222 23467888777777777654332 2
Q ss_pred HHHHhhHHHHHhhcCCCCc----hHHHHHHHHHHHHhhhhch--------------HHHHhhHHHHHHhhcCCCCcc--H
Q 015150 335 ITCSQLLPVVINASKDRVP----NIKFNVAKVLQSLIPIVDQ--------------SVVEKSIRPCLVELSEDPDVD--V 394 (412)
Q Consensus 335 ~~~~~il~~l~~~l~d~~~----~vR~~~~~~l~~l~~~~~~--------------~~~~~~i~~~l~~l~~d~~~~--v 394 (412)
.+.+.++|.+....+.+.. .-.....+....+.....+ ..........+....+|+..+ .
T Consensus 193 ~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~~~~~~~~~~~~h~~La~~il~~i~~~~~~~~~~ 272 (298)
T PF12719_consen 193 RLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVKESNQEIQNESVHVDLAIDILNEILSDPEKEKEE 272 (298)
T ss_pred HHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccCccccccccccHHHHHHHHHHHHHHhccccchHH
Confidence 3555666766665543322 1111122222222221111 122344555666667777766 8
Q ss_pred HHHHHHHHHHhHH
Q 015150 395 RFFATQALQSKDQ 407 (412)
Q Consensus 395 r~~a~~al~~~~~ 407 (412)
++.-.++++.+.-
T Consensus 273 ~k~~~~~L~~L~i 285 (298)
T PF12719_consen 273 RKALCKALSKLEI 285 (298)
T ss_pred HHHHHHHHhcccc
Confidence 8888888877653
No 146
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.91 E-value=0.036 Score=59.06 Aligned_cols=289 Identities=10% Similarity=0.078 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHhCCC--Ccccch----HHHHHHhcCCChHHHHHHHHHHHHHHHHhh-CHH-----HHHHhhhhhHH
Q 015150 83 RYMVANQLYELCEAVGPE--PTRSDV----VPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NPE-----LAIQHILPCVK 150 (412)
Q Consensus 83 R~~~~~~l~~l~~~~~~~--~~~~~l----~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~-----~~~~~~~~~l~ 150 (412)
|.-+++-|..++...... ..|..+ -+.+.+.-.+++..++..|+..|..++-.+ ..+ .+.+.++..+.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 455555555555443322 234443 444444444556789999999988877543 222 23344555555
Q ss_pred Hhc-cCCcHHHHHHHHHHHHhcCcccChhHHH--HhhHHHHHHhhcccChHHHHHHHHHHHHHHHh-hc------hhhHH
Q 015150 151 ELS-SDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV-IG------IDLLS 220 (412)
Q Consensus 151 ~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~-~~------~~~~~ 220 (412)
..+ +..+..||..+++++.++....+..... +.++..+.....++++.+-..+...+..+... ++ .+.+
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F- 1267 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF- 1267 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH-
Confidence 433 4567799999999999887654432211 24555555555677777777777777766543 11 1222
Q ss_pred hhHHHHHHHHhcCC-CchHHHHHHHHhhHHHhhh-----------------------------------ChhhHHHHHHH
Q 015150 221 QSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQL-----------------------------------GVGFFDDKLGA 264 (412)
Q Consensus 221 ~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~-----------------------------------~~~~~~~~l~~ 264 (412)
..++..+.++.+.. +..+-..++..+..++..+ +.+.....++|
T Consensus 1268 ~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p 1347 (1780)
T PLN03076 1268 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP 1347 (1780)
T ss_pred HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH
Confidence 45556666665433 2334334444333322111 01111234566
Q ss_pred HHHHH---hcCchhHHHHHHHHHHHHHHHHhChhh--------hhhhhHHHHHhhhc----------------------C
Q 015150 265 LCMQW---LKDKVYSIRDAAANNVKRLAEEFGPDW--------AMQHIVPQVLEMIN----------------------N 311 (412)
Q Consensus 265 ~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~--------~~~~~l~~l~~~~~----------------------~ 311 (412)
++..+ ..|+..+||..|+..|-.++...|..+ +...++|.+-.+-. +
T Consensus 1348 LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e 1427 (1780)
T PLN03076 1348 LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELD 1427 (1780)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchh
Confidence 66554 669999999999999998888877532 23345555433210 0
Q ss_pred CchHHHHHHHHHHHHhccccchh-----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150 312 PHYLYRMTILQAISLLAPVMGSE-----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 372 (412)
Q Consensus 312 ~~~~~r~~~~~~l~~l~~~~~~~-----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 372 (412)
.+....++...++..+...+..- ...+.++..+..+...++..+-.....++..+....|.
T Consensus 1428 ~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1428 QDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 11124677788888777666543 23444555556666667777777777788777665544
No 147
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.91 E-value=0.025 Score=54.44 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC
Q 015150 24 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 98 (412)
Q Consensus 24 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~ 98 (412)
....+...+..++.+++..+|.++..++..++..--|+ .+++++|.+.+++.+.+..--+.++++|..+.....
T Consensus 87 ~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd-~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~ 160 (1005)
T KOG2274|consen 87 VKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPD-EWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD 160 (1005)
T ss_pred HHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCch-hhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 34455566666677888889999999999999875454 588999999999998888888899999998887653
No 148
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.90 E-value=0.0088 Score=52.13 Aligned_cols=163 Identities=13% Similarity=0.209 Sum_probs=89.4
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHH--------
Q 015150 69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL-------- 140 (412)
Q Consensus 69 ~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-------- 140 (412)
.++....+++++.+|..++++||-.+-. +.+. ..+.++.+...++..+..||..|++++..+....|.+.
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Ll-d~~~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~ 107 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLL-DKEL-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDND 107 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHh-ChHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccC
Confidence 3444666677777788888777766532 2222 23445556665555577778877777777765554331
Q ss_pred ---HHHhhhhhHHHhccCCcHHHHHHHHHHHHhcC--cccCh-hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhh
Q 015150 141 ---AIQHILPCVKELSSDSSQHVRSALATVIMGMA--PILGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 214 (412)
Q Consensus 141 ---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~--~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~ 214 (412)
....+...+.+.+.+.++.+|..+++.+.++. ..+.. ......++-.+.+--..++..+|......+..++..-
T Consensus 108 ~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~ 187 (298)
T PF12719_consen 108 ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSS 187 (298)
T ss_pred ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCC
Confidence 12346666777777778888888888888753 33333 3333333332222222334555544444444443321
Q ss_pred c--hhhHHhhHHHHHHHHhcC
Q 015150 215 G--IDLLSQSLLPAIVELAED 233 (412)
Q Consensus 215 ~--~~~~~~~~~~~l~~~~~d 233 (412)
. ...+.+.++|.+..+.+.
T Consensus 188 ~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 188 PENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 1 233344556666665443
No 149
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.88 E-value=0.001 Score=63.52 Aligned_cols=141 Identities=17% Similarity=0.197 Sum_probs=59.4
Q ss_pred hhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHH---HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch--hh
Q 015150 144 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DL 218 (412)
Q Consensus 144 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~--~~ 218 (412)
.++|.+.+.+......+|.....++..+....+++.. ...++|.+.+.+.=+|..||..+.+.+..+....+. +.
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 3444444444433333344444444444333333222 134445555554444455554444444444333221 11
Q ss_pred HHhhHHHHHHHHhcCCC---chHHHHHHHHhhHHHhhhChhh---HHHHHHHHHHHHhcCchhHHHHHHHHH
Q 015150 219 LSQSLLPAIVELAEDRH---WRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLKDKVYSIRDAAANN 284 (412)
Q Consensus 219 ~~~~~~~~l~~~~~d~~---~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~ 284 (412)
....++|.+..+..|.+ -.||..++++++.+.+..+... +.+.++..+.+.|.|+..-||+.|..+
T Consensus 947 ~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 947 HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 12334444444444433 2345555555555444332211 233444444444555544455554444
No 150
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.00075 Score=66.12 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=110.4
Q ss_pred ChhHHHHhhHHHHHHhhcc----cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhc-CCCchHHHHHHHHhhHHH
Q 015150 176 GKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLA 250 (412)
Q Consensus 176 ~~~~~~~~l~~~l~~~l~d----~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~ 250 (412)
|.......+.|.+...++. .+|+++.+|.-+|+.+.-. +. .+...-+|.+...++ .+++++|..++-.++-++
T Consensus 912 gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa-~fces~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 912 GEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SA-EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred ChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hH-HHHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence 4344456778888888854 4699999999999999754 22 233556788777766 899999999999998888
Q ss_pred hhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q 015150 251 SQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 329 (412)
Q Consensus 251 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~ 329 (412)
-.++. +.+.+-+.+...|.|+++.||+.|+..+..++-+--.+ .+-.++.....+.|++..+|..|=..+..++.
T Consensus 990 v~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK--VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 990 VRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK--VKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred hhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH--hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 76643 34457778889999999999999999998877421111 24456666777889999888888766666654
No 151
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.0011 Score=64.09 Aligned_cols=207 Identities=16% Similarity=0.101 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHhhh---hh-hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccC
Q 015150 5 RRSAATNLGKFAATVEA---AH-LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQD 77 (412)
Q Consensus 5 R~~a~~~l~~~~~~~~~---~~-~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d 77 (412)
|-+|+..|+.+.. +++ +. .---|.|+..++++++-.+.|..-+-+...|...-+. +..+......+.+.+.+
T Consensus 487 RlRAL~LL~RFLD-lGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLD-LGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhc-cchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 6777777777765 222 11 1223889999999999888887666666666543211 22222222233333333
Q ss_pred ---CChHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCC-hHHHHHHHHHHHHHHHHhhCHHHHH---Hhhhh
Q 015150 78 ---KSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPELAI---QHILP 147 (412)
Q Consensus 78 ---~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~ 147 (412)
-+++-|..++-.|+.++..+. .......++..+.+.++|+ .+-.|+-++-+|+.+-+......+. .....
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE 645 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence 236889999999999988654 2234567899999999994 7999999999999998877665432 22456
Q ss_pred hHHHhccCCcHHHHHHHHHHHHhcCcccCh----h--------------HHHHhhHH----HHHHhhcccChHHHHHHHH
Q 015150 148 CVKELSSDSSQHVRSALATVIMGMAPILGK----D--------------ATIEQLLP----IFLSLLKDEFPDVRLNIIS 205 (412)
Q Consensus 148 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~--------------~~~~~l~~----~l~~~l~d~~~~vr~~~~~ 205 (412)
.+..+++|+.++||.+++-+++.+...... . ...+.+++ .+..+++|..+-||.....
T Consensus 646 kL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v 725 (1387)
T KOG1517|consen 646 KLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVV 725 (1387)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHH
Confidence 667788999999999999999988764211 0 01123333 3455667778888888777
Q ss_pred HHHHHHH
Q 015150 206 KLDQVNQ 212 (412)
Q Consensus 206 ~l~~i~~ 212 (412)
++..++.
T Consensus 726 ~ls~~~~ 732 (1387)
T KOG1517|consen 726 ALSHFVV 732 (1387)
T ss_pred HHHHHHH
Confidence 7776653
No 152
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.033 Score=52.62 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHhhHHHHH---HHHhcCCCchHHHHHHHHhhHHHhhhChh------------hHHHH
Q 015150 197 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAI---VELAEDRHWRVRLAIIEYIPLLASQLGVG------------FFDDK 261 (412)
Q Consensus 197 ~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l---~~~~~d~~~~vr~~~~~~l~~l~~~~~~~------------~~~~~ 261 (412)
.++|+..-.-+..++. ++++.+...+-..+ ...++.++|..-..++..+-.+++.+... .....
T Consensus 413 ~e~RkkLk~fqdti~~-idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~ 491 (980)
T KOG2021|consen 413 EEVRKKLKNFQDTIVV-IDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFL 491 (980)
T ss_pred HHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHH
Confidence 3466654433333333 34444333332222 23345667888787877777777765221 11223
Q ss_pred HHHHHHH--HhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhc------CCchHHHHHHHHHHHHhccccch
Q 015150 262 LGALCMQ--WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN------NPHYLYRMTILQAISLLAPVMGS 333 (412)
Q Consensus 262 l~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~------~~~~~~r~~~~~~l~~l~~~~~~ 333 (412)
..+.++. .+..++..|.-.-.+.+.+..+-+..+ ..-+|.++..+- +.+..||..+-..+.++.+.+.+
T Consensus 492 ~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkk 568 (980)
T KOG2021|consen 492 NELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKK 568 (980)
T ss_pred HHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHH
Confidence 3344332 345566666665555555544433322 234555555433 34566777666666666554433
No 153
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.79 E-value=0.005 Score=54.91 Aligned_cols=126 Identities=17% Similarity=0.227 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhc------CCchHHHHHHHHHHHHhccccc---------------
Q 015150 274 VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN------NPHYLYRMTILQAISLLAPVMG--------------- 332 (412)
Q Consensus 274 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~------~~~~~~r~~~~~~l~~l~~~~~--------------- 332 (412)
...-|.+|...+..+.+..+... .+.+...+...+. ..+|+-+.+|+..++.++....
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred cCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 34578888888888888765432 1222222222222 3569999999999999975441
Q ss_pred hhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHH
Q 015150 333 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402 (412)
Q Consensus 333 ~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al 402 (412)
.+++..+++|.+. .-.+..|-+|..|++.+..+...+..+.. ..++|.+..++.+++.-|+..|+.++
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l-~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQL-LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHH-HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2356778888887 33456788999999999999988776544 56999999999999999999998875
No 154
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.78 E-value=0.0068 Score=58.37 Aligned_cols=166 Identities=17% Similarity=0.196 Sum_probs=98.9
Q ss_pred hHHHHHHHHhcC----CCchHHHHHHHHhhHHHhhhCh------hhHHHHHHHHHHHH----hcCchhHHHHHHHHHHHH
Q 015150 222 SLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQW----LKDKVYSIRDAAANNVKR 287 (412)
Q Consensus 222 ~~~~~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~----l~d~~~~vr~~a~~~l~~ 287 (412)
.++..+..++++ +.+.+|..++-.++.+...... ......+.+.+... .++.+.+.+...+++||.
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 455566666654 3567888888888888764321 11223444444443 344556667778888876
Q ss_pred HHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150 288 LAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 367 (412)
Q Consensus 288 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 367 (412)
+.. ......+.|.+. .-.+.+..+|.+++.++..++...+.. ..+.+++.+.+ .+..++||.+|+..+...-
T Consensus 473 ~g~----~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t~ 544 (574)
T smart00638 473 AGH----PSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRK-VQEVLLPIYLN--RAEPPEVRMAAVLVLMETK 544 (574)
T ss_pred cCC----hhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHcC--CCCChHHHHHHHHHHHhcC
Confidence 443 222222333332 112334789999999999887655443 44555555543 3456889999998887664
Q ss_pred hhhchHHHHhhHHHHH-HhhcCCCCccHHHHHHHHH
Q 015150 368 PIVDQSVVEKSIRPCL-VELSEDPDVDVRFFATQAL 402 (412)
Q Consensus 368 ~~~~~~~~~~~i~~~l-~~l~~d~~~~vr~~a~~al 402 (412)
+. ..++..+ ..+..|++..|+..+...|
T Consensus 545 P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 545 PS-------VALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred CC-------HHHHHHHHHHHhhcCcHHHHHHhHHhh
Confidence 32 2233333 3356788899988876654
No 155
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0044 Score=56.26 Aligned_cols=155 Identities=15% Similarity=0.038 Sum_probs=102.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHh-ccCCcHHHHHHHHHHHHhcCcccChhHHHHhhH
Q 015150 107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL-SSDSSQHVRSALATVIMGMAPILGKDATIEQLL 185 (412)
Q Consensus 107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 185 (412)
-..+.+++.|.++-.|...+.+++----..+.. .++..+++. .+|.+..||++++-+++-++- . ...++
T Consensus 518 dd~I~ell~d~ds~lRy~G~fs~alAy~GTgn~----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~--~----D~~~l 587 (926)
T COG5116 518 DDYINELLYDKDSILRYNGVFSLALAYVGTGNL----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCC--D----DRDLL 587 (926)
T ss_pred HHHHHHHhcCchHHhhhccHHHHHHHHhcCCcc----hhHhhhheeecccCchHHHHHHHHheeeeEe--c----Ccchh
Confidence 346777888999999988877765321112222 233444443 688999999999988887662 1 23455
Q ss_pred HHHHHhhccc-ChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhH--HHHH
Q 015150 186 PIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKL 262 (412)
Q Consensus 186 ~~l~~~l~d~-~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l 262 (412)
+...+++.++ ++.||...+-+|+-.+...|. +..+..+..+..|++.-||++++-.++.+.-+..++.- ...+
T Consensus 588 v~tvelLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I 663 (926)
T COG5116 588 VGTVELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRI 663 (926)
T ss_pred hHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHH
Confidence 6666666554 689999999899888877663 33566677778899999999998888887766654321 1234
Q ss_pred HHHHHHHhcCchh
Q 015150 263 GALCMQWLKDKVY 275 (412)
Q Consensus 263 ~~~l~~~l~d~~~ 275 (412)
...+.+.+.|...
T Consensus 664 ~k~f~~vI~~Khe 676 (926)
T COG5116 664 IKKFNRVIVDKHE 676 (926)
T ss_pred HHHHHHHHhhhhH
Confidence 4555555656543
No 156
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.0033 Score=52.67 Aligned_cols=169 Identities=12% Similarity=0.116 Sum_probs=89.4
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHH---HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhh--
Q 015150 224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM-- 298 (412)
Q Consensus 224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-- 298 (412)
+......+.+.+|..+...+..+..++..-. +...+. ++..+.+-++.....|-.+|+.+++.+...++.....
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l 168 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL 168 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566677777777666666665443 222222 3333444566666667777777777777666543221
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH----H
Q 015150 299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----V 374 (412)
Q Consensus 299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~ 374 (412)
+.++-.|+.-....+.-+|+.+-.+|..+.....+. .+++.+...++..++.+|..++.+.......+|-. +
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~ 244 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQ 244 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhH
Confidence 122222222223344567777777777766555544 34444444455666677776666666555554421 2
Q ss_pred HHhhHHHHHHhhcCCCCccHHHH
Q 015150 375 VEKSIRPCLVELSEDPDVDVRFF 397 (412)
Q Consensus 375 ~~~~i~~~l~~l~~d~~~~vr~~ 397 (412)
+.....+.+..-+.|.-+.+|..
T Consensus 245 ~~~dl~~a~~~~~~d~Lp~~~~~ 267 (334)
T KOG2933|consen 245 GSCDLSRAAQEQGSDKLPELREA 267 (334)
T ss_pred hHHHHHHHHHhhhcccccccccc
Confidence 22333444444455555444433
No 157
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.69 E-value=0.048 Score=51.15 Aligned_cols=141 Identities=11% Similarity=0.109 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcC----chhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhc-CCchHHHHHHHHHHHHhccccchhH
Q 015150 261 KLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSEI 335 (412)
Q Consensus 261 ~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~ 335 (412)
.+-|++...... .++.++.+|.-+|.++.- ++.++..+ -+|.+...+. ++++++|..++-.++.+.-.+..
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMC-lS~~fc~e-hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~-- 967 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMC-LSFEFCSE-HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT-- 967 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHH-HhHHHHHH-HHHHHHHHHhhCCCcceeccceeeccccceehhh--
Confidence 345666555544 678888888888887763 44555444 5577776665 89999999999999988765543
Q ss_pred HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 336 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 336 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
+.+..-..+...+.|.+..||+.++-++..+.-. |. ......++.+..+++|+|.++...|...+-.++.
T Consensus 968 ~~de~t~yLyrrL~De~~~V~rtclmti~fLila-gq-~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 968 TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILA-GQ-LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc-cc-eeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 4566777888999999999999999888877531 11 1224567888899999999999999988877765
No 158
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00067 Score=61.30 Aligned_cols=155 Identities=15% Similarity=0.154 Sum_probs=107.5
Q ss_pred HHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhh-ccCCChHHHHHHHHHHHHHHHHhCCCCcccchH
Q 015150 29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV 107 (412)
Q Consensus 29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l-~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 107 (412)
-.++.+++.|.++..|...+-.++.-.-.-+. ..++..++.. .+|.+..||++++-+||-++.. ..+++
T Consensus 518 dd~I~ell~d~ds~lRy~G~fs~alAy~GTgn----~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~------D~~~l 587 (926)
T COG5116 518 DDYINELLYDKDSILRYNGVFSLALAYVGTGN----LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD------DRDLL 587 (926)
T ss_pred HHHHHHHhcCchHHhhhccHHHHHHHHhcCCc----chhHhhhheeecccCchHHHHHHHHheeeeEec------Ccchh
Confidence 34677889999998998776665544333222 2344445555 7889999999999998877642 23455
Q ss_pred HHHHHhc-CCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHH--HHhh
Q 015150 108 PAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQL 184 (412)
Q Consensus 108 ~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l 184 (412)
+...+++ ++.++.||....-+|+-.+...+.. ..+..+..+..|++..||+.++-+.+.+.....++.. ...+
T Consensus 588 v~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I 663 (926)
T COG5116 588 VGTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRI 663 (926)
T ss_pred hHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHH
Confidence 5555554 5678999999999999888766655 3456677788999999999999888877654443322 2466
Q ss_pred HHHHHHhhcccCh
Q 015150 185 LPIFLSLLKDEFP 197 (412)
Q Consensus 185 ~~~l~~~l~d~~~ 197 (412)
...|.+++.|...
T Consensus 664 ~k~f~~vI~~Khe 676 (926)
T COG5116 664 IKKFNRVIVDKHE 676 (926)
T ss_pred HHHHHHHHhhhhH
Confidence 6777777766543
No 159
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.64 E-value=0.053 Score=50.49 Aligned_cols=391 Identities=13% Similarity=0.094 Sum_probs=196.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCc-hHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhccCCCh
Q 015150 4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSW 80 (412)
Q Consensus 4 vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~d~~~ 80 (412)
.|..+++.+......++.+. ...+......++..+. .+.|..+.+.+....+.-.. ...+..++..+..-..+++-
T Consensus 6 ~R~~a~~~l~~~i~~~~~~~-i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~ 84 (464)
T PF11864_consen 6 ERIKAAEELCESIQKYPLSS-IEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDF 84 (464)
T ss_pred HHHHHHHHHHHHHHhCCchH-HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhH
Confidence 47788888888887766533 3334455555676654 45899999999998887543 34555666667666666667
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHH---------------------------HHHHHHHHHHHH
Q 015150 81 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV---------------------------RIAAAGKVTKIC 133 (412)
Q Consensus 81 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v---------------------------r~~a~~~l~~l~ 133 (412)
..|..++..|++=++.+ +.+..++.|.+..++..-...+ -...+..+..+.
T Consensus 85 ~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nvi 162 (464)
T PF11864_consen 85 DLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVI 162 (464)
T ss_pred HHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHH
Confidence 78888888777655544 2345667777777664322111 111112222222
Q ss_pred Hhh---CHHHHHHhhhhhHHHhcc-CCcHHHHHHHHHHHHhcCc--ccChhHHHHhhHHHHHHhhcccChHHHHHHHHHH
Q 015150 134 RIL---NPELAIQHILPCVKELSS-DSSQHVRSALATVIMGMAP--ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 207 (412)
Q Consensus 134 ~~~---~~~~~~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~--~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l 207 (412)
++- -++.....++..+..++. ..++..-..+...+..+.. .++.+. ...++..++....-. .....+.+.+
T Consensus 163 Kfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s-l~~~i~vLCsi~~~~--~l~~~~w~~m 239 (464)
T PF11864_consen 163 KFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES-LSPCIEVLCSIVNSV--SLCKPSWRTM 239 (464)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH-HHHHHHHHhhHhccc--ccchhHHHHH
Confidence 221 123344445555555542 2333333455555555543 223222 223344444432221 3444444444
Q ss_pred HHHHHhhchhhHHhhHHHHHHHHhc--C----CCchHHHHHHHHhhHHHhhhChhhH------HHHHHHHHHHHhcCchh
Q 015150 208 DQVNQVIGIDLLSQSLLPAIVELAE--D----RHWRVRLAIIEYIPLLASQLGVGFF------DDKLGALCMQWLKDKVY 275 (412)
Q Consensus 208 ~~i~~~~~~~~~~~~~~~~l~~~~~--d----~~~~vr~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~ 275 (412)
..++.. ......+..+...+. + .+..+-++++..++.+.-..|.+.. ...++|.+...++..+.
T Consensus 240 ~nL~~S----~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~ 315 (464)
T PF11864_consen 240 RNLLKS----HLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSP 315 (464)
T ss_pred HHHHcC----ccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCC
Confidence 444422 111334455555552 2 3455666788888877655533221 13488888888887777
Q ss_pred HHHHHHHHHHHHHH-HHhChhhhh---h---hhHHHHHhhhcC-Cc--------hHHHHHHHHH---HHHhccccchhHH
Q 015150 276 SIRDAAANNVKRLA-EEFGPDWAM---Q---HIVPQVLEMINN-PH--------YLYRMTILQA---ISLLAPVMGSEIT 336 (412)
Q Consensus 276 ~vr~~a~~~l~~l~-~~~~~~~~~---~---~~l~~l~~~~~~-~~--------~~~r~~~~~~---l~~l~~~~~~~~~ 336 (412)
.|-...+..+..++ +.++..... + .+++.+...... +. ..++...... +..+.+..+-.--
T Consensus 316 ~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~ 395 (464)
T PF11864_consen 316 RVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGP 395 (464)
T ss_pred eehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCcc
Confidence 77777777777777 555432110 1 122222222211 11 1222222222 2222221110001
Q ss_pred HHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhc-CCCCccHHHHHHHHHHHh
Q 015150 337 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELS-EDPDVDVRFFATQALQSK 405 (412)
Q Consensus 337 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~-~d~~~~vr~~a~~al~~~ 405 (412)
.+.++..+.+....-.++.....+..-........+++. +.....+.... .+++.+||..|.+++..|
T Consensus 396 ~~~~~~f~~~~~~~lp~s~~~~vl~~~~~~~~Ps~~~W~-~n~~~ll~~F~~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 396 KDKLFNFFERVHSYLPDSSALLVLFYEERSCSPSNPDWL-DNLQKLLDRFYNRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhcccCCCChHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHhhC
Confidence 345555555555444333333333111111112222222 33444444443 788889999999888654
No 160
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.63 E-value=0.015 Score=56.66 Aligned_cols=219 Identities=15% Similarity=0.166 Sum_probs=107.6
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh-CH-HHHHHhhhhhHHHhccC
Q 015150 78 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NP-ELAIQHILPCVKELSSD 155 (412)
Q Consensus 78 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~-~~~~~~~~~~l~~~~~d 155 (412)
.....|....++|+..+. ..-+..+.+++...+-. -..+...+..+.... .+ ....+.+.+++..-...
T Consensus 376 ~~~~~r~~~lDal~~aGT--------~~av~~i~~~I~~~~~~-~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~ 446 (618)
T PF01347_consen 376 KKEQARKIFLDALPQAGT--------NPAVKFIKDLIKSKKLT-DDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVK 446 (618)
T ss_dssp --HHHHHHHHHHHHHH-S--------HHHHHHHHHHHHTT-S--HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHH
T ss_pred cHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcccc
Confidence 457788888888877664 33344555555542221 122344454444433 22 23333333333322223
Q ss_pred CcHHHHHHHHHHHHhcCcccChh------------HHHHhhHHHHHHhhc----ccChHHHHHHHHHHHHHHHhhchhhH
Q 015150 156 SSQHVRSALATVIMGMAPILGKD------------ATIEQLLPIFLSLLK----DEFPDVRLNIISKLDQVNQVIGIDLL 219 (412)
Q Consensus 156 ~~~~vr~~~~~~l~~l~~~~~~~------------~~~~~l~~~l~~~l~----d~~~~vr~~~~~~l~~i~~~~~~~~~ 219 (412)
.++.++.+++-+++.++...-.. ...+.+++.+...+. ..+.+.+..++++|+.++.
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------- 519 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------- 519 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------
Confidence 56788888888888776433111 122344455444443 4456777778888887753
Q ss_pred HhhHHHHHHHHhcCC---CchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh
Q 015150 220 SQSLLPAIVELAEDR---HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 296 (412)
Q Consensus 220 ~~~~~~~l~~~~~d~---~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 296 (412)
+..++.+..++.+. ...+|.+++.++..++... +....+.++|++.+ ...+.+||.+|+..|-..- ..
T Consensus 520 -~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n--~~e~~EvRiaA~~~lm~~~---P~-- 590 (618)
T PF01347_consen 520 -PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMN--TTEDPEVRIAAYLILMRCN---PS-- 590 (618)
T ss_dssp -GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH---TTS-HHHHHHHHHHHHHT--------
T ss_pred -chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcC--CCCChhHHHHHHHHHHhcC---CC--
Confidence 23556666666555 5678888888888775443 22333444444433 1245668888876654321 11
Q ss_pred hhhhhHHHHHhhh-cCCchHHHHHHHHH
Q 015150 297 AMQHIVPQVLEMI-NNPHYLYRMTILQA 323 (412)
Q Consensus 297 ~~~~~l~~l~~~~-~~~~~~~r~~~~~~ 323 (412)
...+..+...+ .+++.+|+......
T Consensus 591 --~~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 591 --PSVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp --HHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhCchHHHHHHHHHh
Confidence 12333333333 45666666554443
No 161
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.097 Score=49.89 Aligned_cols=255 Identities=15% Similarity=0.168 Sum_probs=135.5
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHH-----HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh-
Q 015150 104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-----IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK- 177 (412)
Q Consensus 104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~- 177 (412)
++.+..+...++.-+-.||..+++.+..+....+.+.- .+.-+..++.++.|.-+.+|..++-.+..+...-+.
T Consensus 121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~I 200 (970)
T KOG0946|consen 121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSI 200 (970)
T ss_pred chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchH
Confidence 45667777777777888888888888888877766521 222445566677788888888888877777654322
Q ss_pred --hHHHHhhHHHHHHhhccc----ChHHHHHHHHHHHHHHHhhch--hhH-HhhHHHHHHHHh-----cCC---CchHHH
Q 015150 178 --DATIEQLLPIFLSLLKDE----FPDVRLNIISKLDQVNQVIGI--DLL-SQSLLPAIVELA-----EDR---HWRVRL 240 (412)
Q Consensus 178 --~~~~~~l~~~l~~~l~d~----~~~vr~~~~~~l~~i~~~~~~--~~~-~~~~~~~l~~~~-----~d~---~~~vr~ 240 (412)
-...+.++..+.+++..+ ..-|...++..+..+.+.-.. ..+ ....+|.+.+++ .|. .|...+
T Consensus 201 QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qr 280 (970)
T KOG0946|consen 201 QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQR 280 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHH
Confidence 112234444444444432 234555566666555544221 111 233456655443 232 454432
Q ss_pred -HHH-HHhhHHHhhhChh------------hHHHHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHhC--hhhh-----
Q 015150 241 -AII-EYIPLLASQLGVG------------FFDDKLGALCMQWLKDK--VYSIRDAAANNVKRLAEEFG--PDWA----- 297 (412)
Q Consensus 241 -~~~-~~l~~l~~~~~~~------------~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~--~~~~----- 297 (412)
..+ .++..+....++. ....+++..+...+..+ ..+|+..++.+++.++.... .+.|
T Consensus 281 v~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~ 360 (970)
T KOG0946|consen 281 VQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTA 360 (970)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccC
Confidence 222 2222222211110 11233455555544443 56699999999988886432 1112
Q ss_pred ------hhhhHHHHHhhhcCC-chHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCc-hHHHHHH
Q 015150 298 ------MQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP-NIKFNVA 360 (412)
Q Consensus 298 ------~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~-~vR~~~~ 360 (412)
+..+.-.++.+++.. .+..|.++..++..+.- ....-...++..++....+... ++....+
T Consensus 361 p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~--dN~~gq~~~l~tllp~~~nst~Nsl~ag~l 429 (970)
T KOG0946|consen 361 PSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLY--DNDDGQRKFLKTLLPSSTNSTSNSLSAGQL 429 (970)
T ss_pred CCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHh--cchhhHHHHHHHHhhhhccccccchhhhhH
Confidence 223444555555554 37899999999887752 2222233444444444444333 4443333
No 162
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.0047 Score=51.77 Aligned_cols=172 Identities=15% Similarity=0.138 Sum_probs=117.2
Q ss_pred chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHH
Q 015150 105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 182 (412)
Q Consensus 105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 182 (412)
..+......+.+.+|+..--++..+..++.+-.+. ...+.++..+.+-+++....|-.++|-+++.++...+.....
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34555666778889999999999998888766543 234446666667778888888889999999988877665433
Q ss_pred hhHHHHHHhh---cccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh--
Q 015150 183 QLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-- 257 (412)
Q Consensus 183 ~l~~~l~~~l---~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-- 257 (412)
.+-..+..++ .+++.-||..+-++|..+.....+... ++.+.......++++|..++.++......+|-..
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~----L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~ 242 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKL----LRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVL 242 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHH----HHHHHHHHhhhchhhhhhhhccccccceeccccchh
Confidence 3333333333 345678999999999999988776554 4555555778889999999888877776665211
Q ss_pred --HHHHHHHHHHHHhcCchhHHHHHH
Q 015150 258 --FDDKLGALCMQWLKDKVYSIRDAA 281 (412)
Q Consensus 258 --~~~~l~~~l~~~l~d~~~~vr~~a 281 (412)
+...+.+..-+-+.|.-+.+|++|
T Consensus 243 ~~~~~dl~~a~~~~~~d~Lp~~~~~a 268 (334)
T KOG2933|consen 243 LQGSCDLSRAAQEQGSDKLPELREAA 268 (334)
T ss_pred hHhHHHHHHHHHhhhcccccccccch
Confidence 122334444444556655555444
No 163
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.2 Score=51.67 Aligned_cols=141 Identities=13% Similarity=0.188 Sum_probs=91.4
Q ss_pred hcCCCchHHHHHHHHhhHHHhh--hC-hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHh
Q 015150 231 AEDRHWRVRLAIIEYIPLLASQ--LG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE 307 (412)
Q Consensus 231 ~~d~~~~vr~~~~~~l~~l~~~--~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~ 307 (412)
..+..|++|.+.++.+..+.-. ++ .+.-.+.+...+.+.+.|....||+.|+.++..+...-...... ........
T Consensus 1536 ~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~-~k~d~~~~ 1614 (1710)
T KOG1851|consen 1536 ADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFVS-DKRDTTSN 1614 (1710)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccch-Hhhhhhhh
Confidence 3457899999998888776533 23 33345678889999999999999999999999988643222111 11222222
Q ss_pred hhc--CCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH
Q 015150 308 MIN--NPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 373 (412)
Q Consensus 308 ~~~--~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 373 (412)
... ..+....-+++..++++.-.++-. .+..+.+..+....+++ ..++.++-+++..+.....++
T Consensus 1615 ~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~D~ 1683 (1710)
T KOG1851|consen 1615 ILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHADT 1683 (1710)
T ss_pred hhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhhhh
Confidence 222 223445667888888887666543 13333444444444555 678999999999998766654
No 164
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.21 Score=52.44 Aligned_cols=287 Identities=18% Similarity=0.153 Sum_probs=173.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhcc----CCchHHHHHHHH--hHHHHhhcc---------CchhhhhhhH
Q 015150 4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQ----DDQDSVRLLAVE--GCGALGKLL---------EPQDCVAHIL 68 (412)
Q Consensus 4 vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~----~~~~~~r~~a~~--~l~~i~~~~---------~~~~~~~~l~ 68 (412)
+-..+.+.++.+....+..+ .-.++..+..... -....|+..+.. ++....+++ +++.+...-+
T Consensus 800 ~Idta~~lfg~vfp~v~~k~-~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~ 878 (2067)
T KOG1822|consen 800 LIDTAVSLFGSVFPHVNNKI-RLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSAL 878 (2067)
T ss_pred HHHHHHHHHHHhccCccHHH-HHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHH
Confidence 34556666777666655432 3333333333322 223344444433 444444433 3345555566
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCH---HHHHHh
Q 015150 69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNP---ELAIQH 144 (412)
Q Consensus 69 ~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ 144 (412)
.++...+..+++..|-.+.++++.++...+...+...+...++.-+.+ .++..|..-..+++-+-++.+. ......
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t 958 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNT 958 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhccc
Confidence 677777888999999999999999999888877766666666655544 4566677777888888887654 333334
Q ss_pred hhhhHHHhccCCcH-HHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHh-hccc--ChHHHHHHHHHHH------HHHH
Q 015150 145 ILPCVKELSSDSSQ-HVRSALATVIMGMAPILGKDA--TIEQLLPIFLSL-LKDE--FPDVRLNIISKLD------QVNQ 212 (412)
Q Consensus 145 ~~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~-l~d~--~~~vr~~~~~~l~------~i~~ 212 (412)
-+..+..+.+|+.. .|+..+..++..+....|+-. ..+..+.....+ +.++ ..+++...-+.+. .+..
T Consensus 959 ~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alit 1038 (2067)
T KOG1822|consen 959 SVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALIT 1038 (2067)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHH
Confidence 45577777888665 999999888887776554422 122223333333 3332 2344444333333 3333
Q ss_pred hhchh----hH-------HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHH
Q 015150 213 VIGID----LL-------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAA 281 (412)
Q Consensus 213 ~~~~~----~~-------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a 281 (412)
.+|++ .. ....+-...-++..+++-+..++++++..+.-..+...-.+.+++-+..++.....-.|.++
T Consensus 1039 tlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~ 1118 (2067)
T KOG1822|consen 1039 TLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRAS 1118 (2067)
T ss_pred hcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhH
Confidence 33322 11 11112222223456688899999999888876666655567788888888888777778888
Q ss_pred HHHHHHHHHH
Q 015150 282 ANNVKRLAEE 291 (412)
Q Consensus 282 ~~~l~~l~~~ 291 (412)
+.++..+...
T Consensus 1119 ~~clrql~~R 1128 (2067)
T KOG1822|consen 1119 FSCLRQLVQR 1128 (2067)
T ss_pred HhhhhHHhHH
Confidence 8887776653
No 165
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.33 E-value=0.073 Score=51.37 Aligned_cols=165 Identities=13% Similarity=0.051 Sum_probs=93.9
Q ss_pred hhHHHHHHhhcc----cChHHHHHHHHHHHHHHHhhch------hhHHhhHHHHHHH----HhcCCCchHHHHHHHHhhH
Q 015150 183 QLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVE----LAEDRHWRVRLAIIEYIPL 248 (412)
Q Consensus 183 ~l~~~l~~~l~d----~~~~vr~~~~~~l~~i~~~~~~------~~~~~~~~~~l~~----~~~d~~~~vr~~~~~~l~~ 248 (412)
.++..+..++++ .++.++..++-+++.+...... ..+.+.+++.+.+ ..++.+...+..++++|+.
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 445555566554 3578899999888888764321 1122344554444 3445566667777777765
Q ss_pred HHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcC--CchHHHHHHHHHHHH
Q 015150 249 LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN--PHYLYRMTILQAISL 326 (412)
Q Consensus 249 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~--~~~~~r~~~~~~l~~ 326 (412)
+... .....+.|.+. .-.+....+|.+|+.+|..+..... + .+.+.++..+.+ .+..+|.+|+..+-.
T Consensus 473 ~g~~----~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p-~----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 473 AGHP----SSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDP-R----KVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred cCCh----hHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCc-h----HHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 5432 22233333332 1123356799999999998876442 2 344444554444 346799999988776
Q ss_pred hccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHH
Q 015150 327 LAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 363 (412)
Q Consensus 327 l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l 363 (412)
.- +.......+...+ -.|++..|+..+...|
T Consensus 543 t~---P~~~~l~~ia~~l---~~E~~~QV~sfv~S~l 573 (574)
T smart00638 543 TK---PSVALLQRIAELL---NKEPNLQVASFVYSHI 573 (574)
T ss_pred cC---CCHHHHHHHHHHH---hhcCcHHHHHHhHHhh
Confidence 42 2222223332222 3577888887665543
No 166
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.18 Score=47.90 Aligned_cols=308 Identities=10% Similarity=0.046 Sum_probs=169.1
Q ss_pred ccchHHHHHHhcC-----C---ChHHHHHHHHHHHHHHHHhhCHH-----HHHHhhhhhHHHhccCCcHHHHHHHHHHHH
Q 015150 103 RSDVVPAYVRLLR-----D---NEAEVRIAAAGKVTKICRILNPE-----LAIQHILPCVKELSSDSSQHVRSALATVIM 169 (412)
Q Consensus 103 ~~~l~~~l~~~l~-----d---~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~ 169 (412)
.+.+++.+...++ + .++.-...|+..+..+...+... .....+++.+...++++.-..|..+|+.+.
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 4567777777662 2 23455667777777776644332 223336677777778889999999999999
Q ss_pred hcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch-hhHHhhHHHHHHH---HhcCCCchHHHHHHHH
Q 015150 170 GMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-DLLSQSLLPAIVE---LAEDRHWRVRLAIIEY 245 (412)
Q Consensus 170 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~-~~~~~~~~~~l~~---~~~d~~~~vr~~~~~~ 245 (412)
.+...+........+.....+++++++-.|+..|+-++..+...... +.+..++-+.+.+ +.++-+-.+-..+.+.
T Consensus 486 ~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~ 565 (970)
T COG5656 486 TIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMES 565 (970)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHH
Confidence 99766776666667777888889998889999999999888766432 3333344344433 4444333333333222
Q ss_pred h-hHHHhhh---Chhh---HHHHHHHHHHHHhcCc---h---hHHHHHHH---HHHHHHHHHhChh-----hhhhhhHHH
Q 015150 246 I-PLLASQL---GVGF---FDDKLGALCMQWLKDK---V---YSIRDAAA---NNVKRLAEEFGPD-----WAMQHIVPQ 304 (412)
Q Consensus 246 l-~~l~~~~---~~~~---~~~~l~~~l~~~l~d~---~---~~vr~~a~---~~l~~l~~~~~~~-----~~~~~~l~~ 304 (412)
+ +.++..+ +++. +..+++.+...++..+ . .+=..+|. +++..++-.+.+. ..-..+.|.
T Consensus 566 fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypv 645 (970)
T COG5656 566 FVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPV 645 (970)
T ss_pred HHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 1 1222222 2221 1122233333333322 1 11122233 3333333333322 122345555
Q ss_pred HHhhhcCCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCc-hHHHHHHHHHHHHhhhhc-----hHHHH
Q 015150 305 VLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVD-----QSVVE 376 (412)
Q Consensus 305 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~-~vR~~~~~~l~~l~~~~~-----~~~~~ 376 (412)
+.-.+++.....-..+++.+....- +..+ +..-.++..+.+++.|+.. ..-..+..++..+...-+ .+.+.
T Consensus 646 i~Filkn~i~dfy~Ea~dildg~tf-~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~ 724 (970)
T COG5656 646 ISFILKNEISDFYQEALDILDGYTF-MSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYG 724 (970)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhhH-HHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchh
Confidence 5555666555555566666554331 1111 3444566677777777764 444566677777753221 22444
Q ss_pred hhHHHHHHhhcCCCCc--cHHHHHHHHHHHhHHhhhC
Q 015150 377 KSIRPCLVELSEDPDV--DVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 377 ~~i~~~l~~l~~d~~~--~vr~~a~~al~~~~~~~~~ 411 (412)
+-+.....+.++..+. +=+..+++....++-++++
T Consensus 725 ~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd 761 (970)
T COG5656 725 SICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRD 761 (970)
T ss_pred HHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccc
Confidence 5566666665544444 5556666666666655543
No 167
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=97.23 E-value=0.067 Score=49.15 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=56.7
Q ss_pred HHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcc---cchHHHHHHhcCCC
Q 015150 42 SVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR---SDVVPAYVRLLRDN 117 (412)
Q Consensus 42 ~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~ 117 (412)
..|..|+++||.+..+++.+......-+.+..++++++..-|..++-.+.+.+......... +.+.+.+...++++
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 45788999999999998766544445557888899988888999999999998876644332 35667777777744
No 168
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=97.19 E-value=0.0053 Score=42.38 Aligned_cols=80 Identities=18% Similarity=0.097 Sum_probs=48.8
Q ss_pred HHHhccCCchHHHHHHHHhHHHHhhccC-chhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 015150 32 FEELTQDDQDSVRLLAVEGCGALGKLLE-PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAY 110 (412)
Q Consensus 32 l~~l~~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l 110 (412)
....++|+.+.+|..++..|..+.+.-+ .....+.++.+++..++|+++-|=.+++++|..++...+ ..++|.+
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----~~vl~~L 82 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----DEVLPIL 82 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----HHHHHHH
Confidence 3444566666677777777777666655 434455566666777777777777777777777666432 3345555
Q ss_pred HHhcCC
Q 015150 111 VRLLRD 116 (412)
Q Consensus 111 ~~~l~d 116 (412)
.+...|
T Consensus 83 ~~~y~~ 88 (92)
T PF10363_consen 83 LDEYAD 88 (92)
T ss_pred HHHHhC
Confidence 554443
No 169
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.19 E-value=0.011 Score=58.78 Aligned_cols=172 Identities=11% Similarity=0.035 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh--ChhhHHHHHHHHHHHHhcCch
Q 015150 197 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLKDKV 274 (412)
Q Consensus 197 ~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~ 274 (412)
..||.+++++|+.+........+ ...+..+.+++..++|++|+..+..+....... +-..+...+++.+...+.|.+
T Consensus 143 apVre~caq~L~~~l~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ 221 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSD 221 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 57999999999999998776655 677788888888899999998776665544422 112344567888889999999
Q ss_pred hHHHHHHHHHHHHHHHHhChh------hhhhhhHHHHHhhhc--CCchHHHHHHHHHHHHh-ccccchh-HHHHhhHHHH
Q 015150 275 YSIRDAAANNVKRLAEEFGPD------WAMQHIVPQVLEMIN--NPHYLYRMTILQAISLL-APVMGSE-ITCSQLLPVV 344 (412)
Q Consensus 275 ~~vr~~a~~~l~~l~~~~~~~------~~~~~~l~~l~~~~~--~~~~~~r~~~~~~l~~l-~~~~~~~-~~~~~il~~l 344 (412)
.+||..|+..+.......-.. .+...+...+.++.. .....++......+... ...+... .....+.|.+
T Consensus 222 ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~ 301 (1549)
T KOG0392|consen 222 DDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRL 301 (1549)
T ss_pred hHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhh
Confidence 999999999888777655111 111112222222111 11122222222111111 0001111 1123456666
Q ss_pred HhhcCCCCchHHHHHHHHHHHHhhh
Q 015150 345 INASKDRVPNIKFNVAKVLQSLIPI 369 (412)
Q Consensus 345 ~~~l~d~~~~vR~~~~~~l~~l~~~ 369 (412)
+.++.+....+|.+++.++..+.+.
T Consensus 302 ~p~l~~~i~sv~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 302 WPFLRHTISSVRRAALETLAMLLEA 326 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6667777778999988888877543
No 170
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=97.17 E-value=0.0038 Score=43.07 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=64.2
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHHHHhC-CCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 015150 67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVG-PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI 145 (412)
Q Consensus 67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 145 (412)
.+...+..++|+.+-+|..++..|.++.+.-. .....+.++..+...++|+++.|=-.|++++..++...+.+ +
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~-----v 78 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE-----V 78 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-----H
Confidence 34556677788888999999999999988766 44455678888889999999999999999999998876554 4
Q ss_pred hhhHHHhccC
Q 015150 146 LPCVKELSSD 155 (412)
Q Consensus 146 ~~~l~~~~~d 155 (412)
+|.+.+...|
T Consensus 79 l~~L~~~y~~ 88 (92)
T PF10363_consen 79 LPILLDEYAD 88 (92)
T ss_pred HHHHHHHHhC
Confidence 4555554433
No 171
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.13 E-value=0.0036 Score=48.60 Aligned_cols=138 Identities=11% Similarity=0.159 Sum_probs=77.0
Q ss_pred HhhHHHHHHHHhcC-CCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHHh-
Q 015150 220 SQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-----DKVYSIRDAAANNVKRLAEEF- 292 (412)
Q Consensus 220 ~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~- 292 (412)
.+.+++.+..+++. .+|.+|.++++.+|.++..= +- .......... +.+........ .....
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALD-P~-----~~k~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~ 76 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALD-PY-----KHKSIQKSLDSKSSENSNDESTDISL-----PMMGIS 76 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccC-cH-----HHhcccccCCccccccccccchhhHH-----hhccCC
Confidence 35667777766654 45888888888877665321 11 1111111111 11111111111 11111
Q ss_pred --ChhhhhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150 293 --GPDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 367 (412)
Q Consensus 293 --~~~~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 367 (412)
..+++....+..++..++|++ ...+.++++++..+.+..|.. .|.+.++|.+++.++...++.|...+.-|+.+.
T Consensus 77 ~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 77 PSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred CchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 234445566777777888776 334456677766666555543 578888888888887766677777777777665
Q ss_pred h
Q 015150 368 P 368 (412)
Q Consensus 368 ~ 368 (412)
.
T Consensus 157 ~ 157 (160)
T PF11865_consen 157 S 157 (160)
T ss_pred H
Confidence 4
No 172
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.10 E-value=0.12 Score=51.55 Aligned_cols=231 Identities=15% Similarity=0.123 Sum_probs=134.6
Q ss_pred hhHHHHHHHHHHHHHHhhh------hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhcc
Q 015150 3 MVRRSAATNLGKFAATVEA------AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ 76 (412)
Q Consensus 3 ~vR~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~ 76 (412)
.+|...+..++.++....- ....+.++..+..+..++.-.+|.-|.-+...+-..+ .....++.+
T Consensus 170 ~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~L---------v~va~~Ls~ 240 (1048)
T KOG2011|consen 170 NFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTAL---------VSVALNLSS 240 (1048)
T ss_pred HHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Confidence 3567777778877775432 3355667788888888888788887655544444332 111112211
Q ss_pred -------------CCChHHH--HHHHHHHHHHHHHhCCCCcccchHHHHHH-----hcCCChHHHHHHHHHHHHHHHHhh
Q 015150 77 -------------DKSWRVR--YMVANQLYELCEAVGPEPTRSDVVPAYVR-----LLRDNEAEVRIAAAGKVTKICRIL 136 (412)
Q Consensus 77 -------------d~~~~vR--~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-----~l~d~~~~vr~~a~~~l~~l~~~~ 136 (412)
.+...-| ...+........ +.......++..+.. ...|-.+.+|..|++.|+.+.+.+
T Consensus 241 ~~~~tskQleaEr~k~r~~rarle~Ll~~r~etq--e~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~y 318 (1048)
T KOG2011|consen 241 HNDKTSKQLEAERNKSRGNRARLESLLMLRKETQ--EQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSY 318 (1048)
T ss_pred hhHHHHHHHHHHhcccccchHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhc
Confidence 1112222 222222111111 110111223333333 236889999999999999999998
Q ss_pred CHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc---cC-hhHHHHhhHHHHHHhh-cccChHHHHHHHHHHHHHH
Q 015150 137 NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI---LG-KDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVN 211 (412)
Q Consensus 137 ~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~---~~-~~~~~~~l~~~l~~~l-~d~~~~vr~~~~~~l~~i~ 211 (412)
+.-......+.++--.++|.+..||..++.++..+... .+ -+.+.+.+-..+.++. .|-+..||...+..+....
T Consensus 319 P~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~ 398 (1048)
T KOG2011|consen 319 PEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLS 398 (1048)
T ss_pred cHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHh
Confidence 88766666777788889999999999999999988765 11 1223344444555555 5667778866554333221
Q ss_pred HhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhh
Q 015150 212 QVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 247 (412)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~ 247 (412)
. ...+...=+..+..++-|.+++++.++...+.
T Consensus 399 ~---~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 399 S---SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred c---ccccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 1 11111222334455667778888877766543
No 173
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.06 E-value=0.23 Score=45.11 Aligned_cols=171 Identities=10% Similarity=0.018 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHHHhhh--hhhHH------HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHH
Q 015150 3 MVRRSAATNLGKFAATVEA--AHLKS------EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVI 71 (412)
Q Consensus 3 ~vR~~a~~~l~~~~~~~~~--~~~~~------~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l 71 (412)
.+.+++...+..+....+. +.+.+ .....+..+++.++..+...++..+..+...-+. ......+.+.+
T Consensus 69 d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l 148 (429)
T cd00256 69 DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWL 148 (429)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHH
Confidence 4555666666666654332 11111 1122222355556667788888888887754222 11223344455
Q ss_pred HhhccCC-ChHHHHHHHHHHHHHHHHhCCC--CcccchHHHHHHhcCCC--hHHHHHHHHHHHHHHHHhhC--HHHHHHh
Q 015150 72 VNFSQDK-SWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILN--PELAIQH 144 (412)
Q Consensus 72 ~~l~~d~-~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~--~~~~~~~ 144 (412)
...+..+ +......++.++..+...-.-. ......++.+...+... +.+....++.++--+.-.-. +......
T Consensus 149 ~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~ 228 (429)
T cd00256 149 KEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLS 228 (429)
T ss_pred HHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcccc
Confidence 5554432 3556667777777765421100 01122455555555432 34555656555544321111 1111234
Q ss_pred hhhhHHHhccCC-cHHHHHHHHHHHHhcCc
Q 015150 145 ILPCVKELSSDS-SQHVRSALATVIMGMAP 173 (412)
Q Consensus 145 ~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~ 173 (412)
++|.+.+.+++. -+.|-+.++.++-++..
T Consensus 229 ~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 229 LIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 777777777542 33444455556666554
No 174
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=96.99 E-value=0.16 Score=42.37 Aligned_cols=187 Identities=14% Similarity=0.188 Sum_probs=112.8
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHh--------
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN-------- 73 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-------- 73 (412)
|.......+.+..++..-. ...+.++..+..+.+.+....+..+.+.+..+...-+.- .+.+.+.+..
T Consensus 15 ~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f~~L~~~L~~~~~r~~~~ 90 (234)
T PF12530_consen 15 PELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--FPFLQPLLLLLILRIPSS 90 (234)
T ss_pred hHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--HHHHHHHHHHHHhhcccc
Confidence 4455566666666665321 344556667777777766666656666666665543221 1333333333
Q ss_pred -hccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc-CCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHH
Q 015150 74 -FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE 151 (412)
Q Consensus 74 -l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 151 (412)
.-.+..+....+.+..+..++...+. ...++++.+..++ ++.++.++..+++++..+++.---+ +. ..+..+.+
T Consensus 91 ~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd-~~-s~w~vl~~ 166 (234)
T PF12530_consen 91 FSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD-FY-SAWKVLQK 166 (234)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc-HH-HHHHHHHH
Confidence 12345677777777888888887666 5678999999999 7889999999999999998532221 11 12233332
Q ss_pred -hccCCcHHHHHHHHHHHHhcCccc-Ch---hHHHHhhHHHHHHhhcccC
Q 015150 152 -LSSDSSQHVRSALATVIMGMAPIL-GK---DATIEQLLPIFLSLLKDEF 196 (412)
Q Consensus 152 -~~~d~~~~vr~~~~~~l~~l~~~~-~~---~~~~~~l~~~l~~~l~d~~ 196 (412)
+-.+..+.|-...++.+.-+...- .. +.....++..+.++....+
T Consensus 167 ~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 167 KLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred hcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 345667777776666665443221 11 2233566677777666544
No 175
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.99 E-value=0.035 Score=43.83 Aligned_cols=125 Identities=19% Similarity=0.169 Sum_probs=67.8
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcC-CchHHHHHHHHHHHHhccccchhHHHHhhHHHH
Q 015150 266 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSEITCSQLLPVV 344 (412)
Q Consensus 266 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l 344 (412)
+-..+.|+++.||.+|+..+..+.+.. .. ++..-.+.-.. .++. ..-..++.+ ...+-..+
T Consensus 45 lt~il~Dp~~kvR~aA~~~l~~lL~gs-k~-----~L~~Ae~~~~~~~sFt---slS~tLa~~---------i~~lH~~L 106 (182)
T PF13251_consen 45 LTCILKDPSPKVRAAAASALAALLEGS-KP-----FLAQAEESKGPSGSFT---SLSSTLASM---------IMELHRGL 106 (182)
T ss_pred hHHHHcCCchhHHHHHHHHHHHHHHcc-HH-----HHHHHHhcCCCCCCcc---cHHHHHHHH---------HHHHHHHH
Confidence 344578999999999999999988753 11 11111111111 1110 000111111 11222222
Q ss_pred Hhhc-CCCCchHHHHHHHHHHHHhhhhc----hHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150 345 INAS-KDRVPNIKFNVAKVLQSLIPIVD----QSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 345 ~~~l-~d~~~~vR~~~~~~l~~l~~~~~----~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 408 (412)
+..+ .+.+..+-...++++..+.+... +..+...++..+..+..+.|.+||..+..+++.+...
T Consensus 107 l~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 107 LLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 2222 34566666777777777755422 1234556667777777778888888888888777654
No 176
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.94 E-value=0.021 Score=44.76 Aligned_cols=90 Identities=19% Similarity=0.181 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh---hhhhHHHHHhhhcCCchHHHHHHHHHHHHh---ccccc
Q 015150 259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVLEMINNPHYLYRMTILQAISLL---APVMG 332 (412)
Q Consensus 259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l---~~~~~ 332 (412)
.+.++|++...+.+....-|..|.+.+.++++.-+.+.+ ..++++.+...++.++..+..+++.++..+ ++..|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 466888888888888888888888888888877333322 345666677777778888888888888888 56666
Q ss_pred hh--HHHHhhHHHHHhhc
Q 015150 333 SE--ITCSQLLPVVINAS 348 (412)
Q Consensus 333 ~~--~~~~~il~~l~~~l 348 (412)
.. ++.+.++|.+--+.
T Consensus 116 ~aLvPyyrqLLp~ln~f~ 133 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFK 133 (183)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 54 46666666655433
No 177
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.94 E-value=0.038 Score=43.30 Aligned_cols=75 Identities=15% Similarity=0.064 Sum_probs=58.0
Q ss_pred HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhH---HHHHHHHHHHHhcCchhHHHHHHHHHHHHH---HHHhC
Q 015150 220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRL---AEEFG 293 (412)
Q Consensus 220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l---~~~~~ 293 (412)
.+.++|.+.+-+.+....-|..+.+.+..+....+.+.. .+++++.+-..|+..+++|...++.+|..+ ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 467888888888888888888888888888888444443 356666777888999999999999999998 44445
Q ss_pred h
Q 015150 294 P 294 (412)
Q Consensus 294 ~ 294 (412)
+
T Consensus 116 ~ 116 (183)
T PF10274_consen 116 E 116 (183)
T ss_pred H
Confidence 4
No 178
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.12 Score=44.81 Aligned_cols=174 Identities=13% Similarity=0.036 Sum_probs=96.8
Q ss_pred CCchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh--hhh-hhhhHHHHHhh
Q 015150 234 RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--DWA-MQHIVPQVLEM 308 (412)
Q Consensus 234 ~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~~l~~l~~~ 308 (412)
.+.+-|..+...+..++..+.... ..-..++.++.++++.+..+|..|+..++.+.++... +.+ -...++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 345566667777777766664321 1112233444488888888888888888888876532 111 12344555554
Q ss_pred hc-CCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCC--CCchHHHHHHHHHHHHhhhhch--HHHHhhHH
Q 015150 309 IN-NPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIR 380 (412)
Q Consensus 309 ~~-~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~--~~~~~~i~ 380 (412)
+. +.+-.+|..++.+++.+.....+. +..-.=...+...+++ .+...+..++..++.+.+.-.. +......+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 44 444667888888888887555432 1111223345555555 4555667777777777654322 22223333
Q ss_pred HHH-HhhcCCCCccHHHHHHHHHHHhHH
Q 015150 381 PCL-VELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 381 ~~l-~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
+.. ..+..--+.+++.++..++-+...
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 322 224444566677777666655443
No 179
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.43 Score=45.84 Aligned_cols=223 Identities=14% Similarity=0.208 Sum_probs=133.4
Q ss_pred HhhHHHHHHhhc------------ccChHHHHHHHHH-HHHH----HHhhchhh-HHhhHHHHHHHHhcCCCc-hHHHHH
Q 015150 182 EQLLPIFLSLLK------------DEFPDVRLNIISK-LDQV----NQVIGIDL-LSQSLLPAIVELAEDRHW-RVRLAI 242 (412)
Q Consensus 182 ~~l~~~l~~~l~------------d~~~~vr~~~~~~-l~~i----~~~~~~~~-~~~~~~~~l~~~~~d~~~-~vr~~~ 242 (412)
+-++|.+.+++. |-+.-+++.|+.+ .+.. ...++.+. +.+.++|-+. ....+. -+|+-+
T Consensus 430 qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpEl~--~~~~~~RiiRRRV 507 (978)
T KOG1993|consen 430 QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPELA--NDHGNSRIIRRRV 507 (978)
T ss_pred HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHHhh--hcccchhHHHHHH
Confidence 456777777662 2223455555543 2222 22233332 3344555555 122233 457788
Q ss_pred HHHhhHHHhhhChhhHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHhC--hhhhh---hhhHHHHHhhhcC-CchH
Q 015150 243 IEYIPLLASQLGVGFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFG--PDWAM---QHIVPQVLEMINN-PHYL 315 (412)
Q Consensus 243 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~--~~~~~---~~~l~~l~~~~~~-~~~~ 315 (412)
+..++..+..--+....+.+...+.+++.|. +..||-+++.++...++... ++.+. +.+...+..++.. ....
T Consensus 508 a~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~D 587 (978)
T KOG1993|consen 508 AWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECD 587 (978)
T ss_pred HHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhh
Confidence 8888888876555566677778888999998 67799999999999887542 33222 2222233333332 3356
Q ss_pred HHHHHHHHHHHhccccchh--HHHH---hhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcC
Q 015150 316 YRMTILQAISLLAPVMGSE--ITCS---QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSE 388 (412)
Q Consensus 316 ~r~~~~~~l~~l~~~~~~~--~~~~---~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~ 388 (412)
.|...+..++.+....+.- ++.. .++|.+.+.- .+++-.|.+.+.++.++...+|.. .+.+.++|.+....+
T Consensus 588 tk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s-~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D 666 (978)
T KOG1993|consen 588 TKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES-EEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTD 666 (978)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-ccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcC
Confidence 7778888888777655542 2222 3445555433 356789999999999999998875 345666676665544
Q ss_pred CCCccHHHHHHHHHHHhHH
Q 015150 389 DPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 389 d~~~~vr~~a~~al~~~~~ 407 (412)
-..++-......++.-+..
T Consensus 667 ~~sP~hv~L~EDgmeLW~~ 685 (978)
T KOG1993|consen 667 PSSPEHVYLLEDGMELWLT 685 (978)
T ss_pred CCCCceeehhhhHHHHHHH
Confidence 3444555555555554443
No 180
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.90 E-value=0.3 Score=43.82 Aligned_cols=125 Identities=17% Similarity=0.200 Sum_probs=85.7
Q ss_pred chHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc------CchhHHHHHHHHHHHHHHHHhC---------------h
Q 015150 236 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK------DKVYSIRDAAANNVKRLAEEFG---------------P 294 (412)
Q Consensus 236 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~---------------~ 294 (412)
...|.+++..+..+++..+... .+.+...+..+++ ..+|.-+.+|+..++.+..... .
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 4568888899988888765542 2223334444443 4567788888888888775431 1
Q ss_pred hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHH
Q 015150 295 DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 363 (412)
Q Consensus 295 ~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l 363 (412)
+++...++|.+. .-.+..+.+|..++..+..+...++++ ....++|.+.++|++++.-|+.-|+.++
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 345566778777 333455789999999999999888876 5667999999999999999998887664
No 181
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.89 E-value=0.015 Score=45.79 Aligned_cols=56 Identities=20% Similarity=0.159 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHhhhh---hhHHHHHHH------------HHHhccCCchHHHHHHHHhHHHHhhcc
Q 015150 3 MVRRSAATNLGKFAATVEAA---HLKSEIMSI------------FEELTQDDQDSVRLLAVEGCGALGKLL 58 (412)
Q Consensus 3 ~vR~~a~~~l~~~~~~~~~~---~~~~~l~~~------------l~~l~~~~~~~~r~~a~~~l~~i~~~~ 58 (412)
.||..|..+|..+++..++. .+|..++|- +.-++.|+++.+|..|+..+..+....
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs 71 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS 71 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc
Confidence 38999999999999985542 356666653 445678999999999999999888763
No 182
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.26 Score=42.73 Aligned_cols=177 Identities=12% Similarity=0.066 Sum_probs=111.9
Q ss_pred CChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh--HHH-HhhHHHHHH
Q 015150 116 DNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATI-EQLLPIFLS 190 (412)
Q Consensus 116 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~-~~l~~~l~~ 190 (412)
..+.+-|..|+..|..+++.+... ......++.+...+++++..+|..+++.++..++.-++. .+. ...++.+..
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 345677888888888888877654 222334555555888999999999999999887654321 111 223344444
Q ss_pred h-hcccChHHHHHHHHHHHHHHHhhchhh--H-HhhHHHHHHHHhcC--CCchHHHHHHHHhhHHHhhhCh--hhHHHHH
Q 015150 191 L-LKDEFPDVRLNIISKLDQVNQVIGIDL--L-SQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV--GFFDDKL 262 (412)
Q Consensus 191 ~-l~d~~~~vr~~~~~~l~~i~~~~~~~~--~-~~~~~~~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l 262 (412)
. -.|++.++|..++.+++.+++...+.. + .-.=...+...+++ .+.+.++-++..++.+...-.. +......
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 4 356677899999999999988755322 1 11114556677777 6677788888888877654321 2222333
Q ss_pred HHHH-HHHhcCchhHHHHHHHHHHHHHHHHh
Q 015150 263 GALC-MQWLKDKVYSIRDAAANNVKRLAEEF 292 (412)
Q Consensus 263 ~~~l-~~~l~d~~~~vr~~a~~~l~~l~~~~ 292 (412)
.+.. ..+....++++++.++..+-.+....
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 3333 33445566778888887776666544
No 183
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.38 Score=48.12 Aligned_cols=233 Identities=17% Similarity=0.135 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHhCCC-C-cc----cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhcc
Q 015150 81 RVRYMVANQLYELCEAVGPE-P-TR----SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS 154 (412)
Q Consensus 81 ~vR~~~~~~l~~l~~~~~~~-~-~~----~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 154 (412)
.+|...+..+..+...+..+ . +. ..++..+..+-..+--.+|..|..+...+...+ +....++.+
T Consensus 170 ~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~L---------v~va~~Ls~ 240 (1048)
T KOG2011|consen 170 NFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTAL---------VSVALNLSS 240 (1048)
T ss_pred HHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Confidence 57888888899888877652 2 22 334444444444555567877777666654432 111111111
Q ss_pred -------------CCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHH-----HHhhcccChHHHHHHHHHHHHHHHhhch
Q 015150 155 -------------DSSQHVRSALATVIMGMAPILGKDATIEQLLPIF-----LSLLKDEFPDVRLNIISKLDQVNQVIGI 216 (412)
Q Consensus 155 -------------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l-----~~~l~d~~~~vr~~~~~~l~~i~~~~~~ 216 (412)
..+..-|...-..+......-+.......++..+ ..--.|-++.+|..++..|+..+..++.
T Consensus 241 ~~~~tskQleaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~ 320 (1048)
T KOG2011|consen 241 HNDKTSKQLEAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPE 320 (1048)
T ss_pred hhHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccH
Confidence 1111122211111222111111111111222222 2234688999999999999999998887
Q ss_pred hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh---C-hhhHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHH
Q 015150 217 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---G-VGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEE 291 (412)
Q Consensus 217 ~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~-~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~ 291 (412)
..+...++..+-=.+.|.+..||..+++++..+...- + -+.+.+.+..-++.+. .|-+..||...+..+-...
T Consensus 321 ~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~-- 398 (1048)
T KOG2011|consen 321 IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLS-- 398 (1048)
T ss_pred HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHh--
Confidence 6666667777777789999999999999999988762 2 1223333444444544 6777788877766543332
Q ss_pred hChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHH
Q 015150 292 FGPDWAMQHIVPQVLEMINNPHYLYRMTILQAIS 325 (412)
Q Consensus 292 ~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~ 325 (412)
....+.+.=+..+..++-|.+.+++.++...+.
T Consensus 399 -~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 399 -SSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred -cccccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 222233334455666677777788887776664
No 184
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.83 E-value=0.16 Score=43.77 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=80.4
Q ss_pred HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh---H-----HHHHHHHHHHHhc--------CchhHHHHHHHH
Q 015150 220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---F-----DDKLGALCMQWLK--------DKVYSIRDAAAN 283 (412)
Q Consensus 220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~-----~~~l~~~l~~~l~--------d~~~~vr~~a~~ 283 (412)
.+.++|.+..++.|.++.+|...+.++..+....+... + .+.+.+.+..++. ++...+-..|..
T Consensus 117 ~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~ 196 (282)
T PF10521_consen 117 WPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYP 196 (282)
T ss_pred hhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Confidence 35678999999999999999999999988887665433 2 2334444555554 666777777888
Q ss_pred HHHHHHHHhCh-------hhhhhhhHHHHHhhhcC----CchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCC
Q 015150 284 NVKRLAEEFGP-------DWAMQHIVPQVLEMINN----PHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKD 350 (412)
Q Consensus 284 ~l~~l~~~~~~-------~~~~~~~l~~l~~~~~~----~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d 350 (412)
++-.++..... ..+.+.+...++..+.. +...++...++.+..+...+|.. .+.+.++|.+.+.+.+
T Consensus 197 ~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 197 ALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 87777664311 01111111112222211 23566677777777766666654 3566666666666665
Q ss_pred C
Q 015150 351 R 351 (412)
Q Consensus 351 ~ 351 (412)
+
T Consensus 277 p 277 (282)
T PF10521_consen 277 P 277 (282)
T ss_pred C
Confidence 5
No 185
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.51 Score=45.06 Aligned_cols=289 Identities=11% Similarity=0.023 Sum_probs=158.0
Q ss_pred HHHHHHHhHHHHhhccCc-----hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC
Q 015150 43 VRLLAVEGCGALGKLLEP-----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN 117 (412)
Q Consensus 43 ~r~~a~~~l~~i~~~~~~-----~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 117 (412)
....|.+.++.+...+.. ......+++.+....+++.--.|..+|+.++.+...+.+.....++......+++|.
T Consensus 432 q~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn 511 (970)
T COG5656 432 QAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNN 511 (970)
T ss_pred HHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcC
Confidence 345678888887774332 234555777778788888889999999999999777776666667778888889998
Q ss_pred hHHHHHHHHHHHHHHHHhhC-HHHHHHhhhhhHHHhc---cCCcHHHHHHHHHHHH-hcCcc---cChhHHHHhhHH---
Q 015150 118 EAEVRIAAAGKVTKICRILN-PELAIQHILPCVKELS---SDSSQHVRSALATVIM-GMAPI---LGKDATIEQLLP--- 186 (412)
Q Consensus 118 ~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~~~---~d~~~~vr~~~~~~l~-~l~~~---~~~~~~~~~l~~--- 186 (412)
+--|+-.|..++.-+..... .+.+.+++.+.+.+++ ++-+-++-..+.+.+. .+.+. ++++. ...++.
T Consensus 512 ~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eL-a~~Lv~qFl 590 (970)
T COG5656 512 HLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPEL-AGSLVRQFL 590 (970)
T ss_pred CcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHH-HHHHHHHHH
Confidence 88899999999987765432 2345555555555544 4444444444443332 22222 22222 223333
Q ss_pred -HHHHhhccc---C---hHHHHHHH---HHHHHHHHhhchhh-----HHhhHHHHHHHHhcCCCchHHHHHHHHhhHHH-
Q 015150 187 -IFLSLLKDE---F---PDVRLNII---SKLDQVNQVIGIDL-----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA- 250 (412)
Q Consensus 187 -~l~~~l~d~---~---~~vr~~~~---~~l~~i~~~~~~~~-----~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~- 250 (412)
....++.++ + ++-+.+|. +.+..+.-.+.... +...+.|.+.-.+++.....-..+++.+....
T Consensus 591 kiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf 670 (970)
T COG5656 591 KIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTF 670 (970)
T ss_pred HHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhH
Confidence 333333322 1 12222222 33333332222111 23455666666666666666666666554432
Q ss_pred --hhhChhhHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHhChhhh-----hhhhHHHHHhhhcCCc--hHHHHHH
Q 015150 251 --SQLGVGFFDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDWA-----MQHIVPQVLEMINNPH--YLYRMTI 320 (412)
Q Consensus 251 --~~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~-----~~~~l~~l~~~~~~~~--~~~r~~~ 320 (412)
+.+.+ ..-.+...+.+++.|+.. .--+.+..++..++..-+.++. ...+.......+.+.. -.-+..+
T Consensus 671 ~skeI~p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~v 748 (970)
T COG5656 671 MSKEIEP--IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGV 748 (970)
T ss_pred HHHHhhh--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHH
Confidence 22211 122355555666666653 4455666677777764333221 1222222233333332 2445667
Q ss_pred HHHHHHhccccchh
Q 015150 321 LQAISLLAPVMGSE 334 (412)
Q Consensus 321 ~~~l~~l~~~~~~~ 334 (412)
++.+..+.-.++.+
T Consensus 749 c~i~e~l~Ln~rd~ 762 (970)
T COG5656 749 CRIIESLILNIRDE 762 (970)
T ss_pred HHHHHHHHHHccch
Confidence 77777776555553
No 186
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.78 E-value=0.37 Score=43.23 Aligned_cols=153 Identities=16% Similarity=0.077 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc-hhhhh-hhHHH-HHhhccC-CChHHHHHHHHHHHHHHHHh
Q 015150 22 AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDCVA-HILPV-IVNFSQD-KSWRVRYMVANQLYELCEAV 97 (412)
Q Consensus 22 ~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~-~~~~~-~l~~~-l~~l~~d-~~~~vR~~~~~~l~~l~~~~ 97 (412)
+..+....+-++.++-+++..+|.++.+++..+...... ....+ .+--+ +..+..| ++..-|..|.+.+..+.+.-
T Consensus 20 ~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~ 99 (371)
T PF14664_consen 20 DLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK 99 (371)
T ss_pred hhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc
Confidence 445666666666544444489999999999877754321 11111 11112 2234444 45667999999999888763
Q ss_pred -CCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150 98 -GPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 174 (412)
Q Consensus 98 -~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 174 (412)
+.+....-++..+....+++++..|..|++.+..++-.-++-......+..+.+.+.|....+...++.++-.+...
T Consensus 100 ~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~ 177 (371)
T PF14664_consen 100 KGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS 177 (371)
T ss_pred CCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence 23344566788888899999999999999999998876555555555667777776665545555666655555443
No 187
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.77 E-value=0.61 Score=45.50 Aligned_cols=233 Identities=12% Similarity=0.094 Sum_probs=137.9
Q ss_pred CCChHHHHHHHHHHHHHHHHh--hCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhh
Q 015150 115 RDNEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 192 (412)
Q Consensus 115 ~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 192 (412)
..+.|..-..++..++.+.+. ..+......+--.+..+..|..+.+|..++..+...+..---......++..+.++.
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qla 539 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLA 539 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHc
Confidence 455566666778888877765 333333222333333455688889999999988776632111122345666677777
Q ss_pred cccChHHHHHHHHHHHHHHHhhch--hhHHhhHHHHHHHHh--cCCCchHHHHHHHHhhHHHh---hhChhhHHHHHHHH
Q 015150 193 KDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELA--EDRHWRVRLAIIEYIPLLAS---QLGVGFFDDKLGAL 265 (412)
Q Consensus 193 ~d~~~~vr~~~~~~l~~i~~~~~~--~~~~~~~~~~l~~~~--~d~~~~vr~~~~~~l~~l~~---~~~~~~~~~~l~~~ 265 (412)
.+.+.++-...+.+|+.+++.=.+ ......+.|....+. ..++|.+-..+-..+..+.. ..|+ .....+|-
T Consensus 540 s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~--m~e~~iPs 617 (1005)
T KOG2274|consen 540 SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP--MQERLIPS 617 (1005)
T ss_pred ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHH
Confidence 788899999999999998876321 122334555444321 22344555555455544443 3343 34557888
Q ss_pred HHHHhcCch----hHHHHHHHHHHHHHHHHhChh---hhhhhhHHHHHhhhcCC-chHHHHHHHHHHHHhccccc-----
Q 015150 266 CMQWLKDKV----YSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMG----- 332 (412)
Q Consensus 266 l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~----- 332 (412)
+++.+.-++ ......++..|..++++-.++ .+....+|.+.+..-+. +...-+.+-+++..+...-.
T Consensus 618 lisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t 697 (1005)
T KOG2274|consen 618 LISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLT 697 (1005)
T ss_pred HHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHh
Confidence 888777655 446666777788788765543 33456777777655443 35566777777777654311
Q ss_pred ----hhHHHHhhHHHHHhhcC
Q 015150 333 ----SEITCSQLLPVVINASK 349 (412)
Q Consensus 333 ----~~~~~~~il~~l~~~l~ 349 (412)
...-...++..+-.+|+
T Consensus 698 ~~~e~g~~~~yImqV~sqLLd 718 (1005)
T KOG2274|consen 698 WHDEPGHNLWYIMQVLSQLLD 718 (1005)
T ss_pred hccCCCccHHHHHHHHHHHcC
Confidence 11123466776666654
No 188
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.75 E-value=0.014 Score=45.28 Aligned_cols=142 Identities=17% Similarity=0.194 Sum_probs=77.2
Q ss_pred hhhhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcC-----CChHHHHHHHHHHHHHHHHh-
Q 015150 63 CVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR-----DNEAEVRIAAAGKVTKICRI- 135 (412)
Q Consensus 63 ~~~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~- 135 (412)
.-+.+++.+.+.++ +.++.+|.++++.+|.++.-- + .-...+..... +.+....... +......
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALD-P-----~~~k~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~ 77 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALD-P-----YKHKSIQKSLDSKSSENSNDESTDIS---LPMMGISP 77 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccC-c-----HHHhcccccCCccccccccccchhhH---HhhccCCC
Confidence 34567777777654 356889999999998887521 0 00010111111 1111111111 1100000
Q ss_pred hCHHHHHHhhhhhHHHhccCCcH-HHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHH
Q 015150 136 LNPELAIQHILPCVKELSSDSSQ-HVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 212 (412)
Q Consensus 136 ~~~~~~~~~~~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~ 212 (412)
..++.+....+..+.+.++|++- .-+.+++.++..+....|..+ +..+++|.+.+.++..++..|....+.|+.+..
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 12334444455666666666442 334456666666665555443 346888888888887777888888877777765
Q ss_pred h
Q 015150 213 V 213 (412)
Q Consensus 213 ~ 213 (412)
.
T Consensus 158 i 158 (160)
T PF11865_consen 158 I 158 (160)
T ss_pred H
Confidence 4
No 189
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=96.72 E-value=0.067 Score=44.11 Aligned_cols=130 Identities=17% Similarity=0.176 Sum_probs=59.9
Q ss_pred HHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccC-CChHHHHHH-HHHHHHHHHHhCCCCcccch
Q 015150 29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMV-ANQLYELCEAVGPEPTRSDV 106 (412)
Q Consensus 29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~~-~~~l~~l~~~~~~~~~~~~l 106 (412)
..++..+..++..+.|..|+..+........ ...++.+...+.+ .+|.+--.. ...++.+.... +..
T Consensus 53 ~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~~ 121 (213)
T PF08713_consen 53 YELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PEA 121 (213)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GGH
T ss_pred HHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HHH
Confidence 3344445555555555555555544332211 1133344444333 345444333 22234333211 345
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCc
Q 015150 107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 173 (412)
Q Consensus 107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 173 (412)
.+.+.+.+++++.-+|..++..+...... .....++..+...+.|++..||.++..+|..++.
T Consensus 122 ~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~ 184 (213)
T PF08713_consen 122 LELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK 184 (213)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 55556666666666666665555443332 1122344445555556666666666666655553
No 190
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=96.69 E-value=0.17 Score=46.63 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhh---hhhHHHHHhhcc
Q 015150 4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV---AHILPVIVNFSQ 76 (412)
Q Consensus 4 vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~---~~l~~~l~~l~~ 76 (412)
.|..++++||.++..++.+......-+++..++++.....|..|+-++...+......... ..+.+.+...++
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~ 178 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE 178 (441)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Confidence 4889999999999998766655555567888899999989999999999998876543222 244444554444
No 191
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.65 Score=44.67 Aligned_cols=266 Identities=16% Similarity=0.135 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccC-CcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccCh
Q 015150 119 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFP 197 (412)
Q Consensus 119 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 197 (412)
.+=|..|+..|..+++.+..+.....+-|++..+-.| .+++.-..+...+..+... |+.|
T Consensus 37 ~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~-------------------dd~~ 97 (970)
T KOG0946|consen 37 LEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSH-------------------DDSP 97 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhc-------------------Ccch
Confidence 5668999999999999887776666555555555455 3445444455444433321 2122
Q ss_pred HHHHHH--HHHHHH-HHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhH-----HHHHHHHHHHH
Q 015150 198 DVRLNI--ISKLDQ-VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQW 269 (412)
Q Consensus 198 ~vr~~~--~~~l~~-i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~ 269 (412)
+|-..- ...++. ++..+- -.+..+..++..++..+..||..+++.+..+....|.+.- .+.-+.-++.+
T Consensus 98 ~v~dds~qsdd~g~~iae~fi---k~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFI---KNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred hhcccchhhhHHHHHHHHHHH---cCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 221111 111111 111111 0245677888888899999999999999999988876532 13345567888
Q ss_pred hcCchhHHHHHHHHHHHHHHHHhChh-h--hhhhhHHHHHhhhcC----CchHHHHHHHHHHHHhccccch-h-HH-HHh
Q 015150 270 LKDKVYSIRDAAANNVKRLAEEFGPD-W--AMQHIVPQVLEMINN----PHYLYRMTILQAISLLAPVMGS-E-IT-CSQ 339 (412)
Q Consensus 270 l~d~~~~vr~~a~~~l~~l~~~~~~~-~--~~~~~l~~l~~~~~~----~~~~~r~~~~~~l~~l~~~~~~-~-~~-~~~ 339 (412)
|.|....||..++-.|..+.+..+.- . ..+.++..+...+.. ..-.|-+-++..+..+.+.... . +| ...
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~ 254 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGS 254 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccc
Confidence 99999999999999998888755421 0 012233333333332 2234555666666666543332 2 22 224
Q ss_pred hHHHHHhhc-----CCC---Cch-HHHHHHHH-HHHHhhhhch---H---------HHHhhHHHHHHhhcCCC--CccHH
Q 015150 340 LLPVVINAS-----KDR---VPN-IKFNVAKV-LQSLIPIVDQ---S---------VVEKSIRPCLVELSEDP--DVDVR 395 (412)
Q Consensus 340 il~~l~~~l-----~d~---~~~-vR~~~~~~-l~~l~~~~~~---~---------~~~~~i~~~l~~l~~d~--~~~vr 395 (412)
.+|.+.++| .|. .|+ -|...+.. |.-+...+.| . .....++..|...+..+ ..+|+
T Consensus 255 ~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIl 334 (970)
T KOG0946|consen 255 YIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADIL 334 (970)
T ss_pred cHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHH
Confidence 667666554 232 222 23332222 2222211211 0 12345666666655444 44677
Q ss_pred HHHHHHHHHhH
Q 015150 396 FFATQALQSKD 406 (412)
Q Consensus 396 ~~a~~al~~~~ 406 (412)
..+.-+++.+.
T Consensus 335 tesiitvAevV 345 (970)
T KOG0946|consen 335 TESIITVAEVV 345 (970)
T ss_pred HHHHHHHHHHH
Confidence 76666665544
No 192
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.78 Score=45.19 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=72.6
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh-----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH
Q 015150 299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 373 (412)
Q Consensus 299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 373 (412)
.+++.....++.+++-++|..++.++......+... +.....+|.+.+.+.+++|-+-..|++++..++...|+-
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 346666677888999999999999998766554432 234467888899999999999999999999998887773
Q ss_pred ---HHHhhHHHHHHhhcCCCC
Q 015150 374 ---VVEKSIRPCLVELSEDPD 391 (412)
Q Consensus 374 ---~~~~~i~~~l~~l~~d~~ 391 (412)
.+.+.++|-+++++.|.-
T Consensus 882 v~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466889999998765543
No 193
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=96.55 E-value=0.48 Score=41.53 Aligned_cols=244 Identities=14% Similarity=0.110 Sum_probs=134.9
Q ss_pred HHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC------
Q 015150 43 VRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD------ 116 (412)
Q Consensus 43 ~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d------ 116 (412)
-++.|.+.++...+++++ .....+..-+.++.|.+..||..+++.|..++.. .....+.+.+.++++.
T Consensus 40 ~k~lasq~ip~~fk~fp~--la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLnk~sl~~L 113 (460)
T KOG2213|consen 40 EKRLASQFIPRFFKHFPS--LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLNKASLTGL 113 (460)
T ss_pred HHHHHHHHHHHHHhhCch--hhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHHHHHHHHH
Confidence 466788899999988865 2345667778899999999999999999988864 2223444555555432
Q ss_pred ------ChHHHHHHHHHHHHHHHHhhCH----HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh--hHHHHhh
Q 015150 117 ------NEAEVRIAAAGKVTKICRILNP----ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQL 184 (412)
Q Consensus 117 ------~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l 184 (412)
.+..+|..+..-+..=...++. .+...+++..+.+.+.|-..+-=......++.+...-++ +.-.+.|
T Consensus 114 f~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeL 193 (460)
T KOG2213|consen 114 FGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQEL 193 (460)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHH
Confidence 2566777666655432211222 345556777777777776555444455555554433222 2223444
Q ss_pred HHHHHHh-----hcccChHHHHHHHHHHHHHHHhhch----hhHHhhHHHHHHHHhcCCC-chHHHHHHHHhhHHHhhhC
Q 015150 185 LPIFLSL-----LKDEFPDVRLNIISKLDQVNQVIGI----DLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLG 254 (412)
Q Consensus 185 ~~~l~~~-----l~d~~~~vr~~~~~~l~~i~~~~~~----~~~~~~~~~~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~ 254 (412)
+...... ..-.|++.....++++..-.+.+.. ..+...+-..+...-.|.. ...+..+++.+..++....
T Consensus 194 a~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~tt 273 (460)
T KOG2213|consen 194 AEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTT 273 (460)
T ss_pred HHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccch
Confidence 4444333 2224566667777776666555442 2222222222211112222 3455667778877777664
Q ss_pred hhhHHHHHHHHHHHHhc------CchhHHHHHHHHHHHHHHHHhC
Q 015150 255 VGFFDDKLGALCMQWLK------DKVYSIRDAAANNVKRLAEEFG 293 (412)
Q Consensus 255 ~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~ 293 (412)
.+. ..+.+|-+.++|. |.-++....-+.++-.....+|
T Consensus 274 aq~-a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 274 AQA-ARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG 317 (460)
T ss_pred HHH-HHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence 332 3335555555442 3344445555555555555554
No 194
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.53 E-value=0.96 Score=45.99 Aligned_cols=170 Identities=18% Similarity=0.199 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHhhCHHHHH--HhhhhhHHHhcc---CCcHHHHHHHHHHHHhcCcccChhHH-HHhhHHHHHHhhcc
Q 015150 121 VRIAAAGKVTKICRILNPELAI--QHILPCVKELSS---DSSQHVRSALATVIMGMAPILGKDAT-IEQLLPIFLSLLKD 194 (412)
Q Consensus 121 vr~~a~~~l~~l~~~~~~~~~~--~~~~~~l~~~~~---d~~~~vr~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d 194 (412)
-|..|-..|..+++.++...+. .++..++..-++ |.+. --....+.+..+....+.... .-..+|.+..+...
T Consensus 749 errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~~~~~l~~l~~~~~s 827 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHPLGSLLPRLFFFVRS 827 (1549)
T ss_pred HhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHhccc
Confidence 3777777888888888776332 223333333322 1110 000111111111211121110 12456777888888
Q ss_pred cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHH-HhhHHHhhhCh--hhHHHHHHHHHHHHhc
Q 015150 195 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE-YIPLLASQLGV--GFFDDKLGALCMQWLK 271 (412)
Q Consensus 195 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~-~l~~l~~~~~~--~~~~~~l~~~l~~~l~ 271 (412)
.+..+|.+++++++.+......+.. ..++..+..++++.+.-+|+..+. .+..+....+. ..+..-++|.++.++.
T Consensus 828 ~~~a~r~~~ar~i~~~~k~~~~e~m-~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms 906 (1549)
T KOG0392|consen 828 IHIAVRYAAARCIGTMFKSATRETM-ATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS 906 (1549)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence 9999999999999999877554443 445566666777776666665554 44444444332 2245667888899999
Q ss_pred CchhHHHHHHHHHHHHHHHHh
Q 015150 272 DKVYSIRDAAANNVKRLAEEF 292 (412)
Q Consensus 272 d~~~~vr~~a~~~l~~l~~~~ 292 (412)
|....||.+|.+++..++..+
T Consensus 907 d~~d~vR~aat~~fa~lip~~ 927 (1549)
T KOG0392|consen 907 DQIDSVREAATKVFAKLIPLL 927 (1549)
T ss_pred cchHHHHHHHHHHHHHHhccc
Confidence 999999999999999988755
No 195
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.53 E-value=0.61 Score=42.44 Aligned_cols=335 Identities=13% Similarity=0.098 Sum_probs=154.8
Q ss_pred HhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHH
Q 015150 49 EGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGK 128 (412)
Q Consensus 49 ~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 128 (412)
..+-.+....+.++...+++.++-.++++....++ .+...+. . ..+....+..+++.+++-+...++..
T Consensus 56 ~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~-----~f~~~~~-~-----~~~~~~~fl~lL~~~d~~i~~~a~~i 124 (429)
T cd00256 56 KTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVK-----LFHDDAL-L-----KKKTWEPFFNLLNRQDQFIVHMSFSI 124 (429)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHH-----HHHHHhh-c-----cccchHHHHHHHcCCchhHHHHHHHH
Confidence 44444555555566666677777666665322222 1111111 0 12223334447777788899999999
Q ss_pred HHHHHHhhCH---HHHHHhhhhhHHHhccCC-cHHHHHHHHHHHHhcCcccChh--HHHHhhHHHHHHhhcccC--hHHH
Q 015150 129 VTKICRILNP---ELAIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEF--PDVR 200 (412)
Q Consensus 129 l~~l~~~~~~---~~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~--~~vr 200 (412)
+..+...-.. ......+...+...++.. +......++.++..+...-.-. ......++.+.++++... .+..
T Consensus 125 Lt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 125 LAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHH
Confidence 8888654221 122333444555555432 3455566667777765432211 122334566666665422 2344
Q ss_pred HHHHHHHHHHH--HhhchhhHHhhHHHHHHHHhcCC-CchHHHHHHHHhhHHHhhhC----hhhHH-----HHHHHHHHH
Q 015150 201 LNIISKLDQVN--QVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLG----VGFFD-----DKLGALCMQ 268 (412)
Q Consensus 201 ~~~~~~l~~i~--~~~~~~~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~----~~~~~-----~~l~~~l~~ 268 (412)
-.++-++..+. ...........++|.+.+++++. ..++-+.++..+..+..... ...+. ..+.+. ++
T Consensus 205 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~-l~ 283 (429)
T cd00256 205 YQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKT-LQ 283 (429)
T ss_pred HHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHH-HH
Confidence 34433333221 11001111235677777766553 33444444455555544321 11111 122222 22
Q ss_pred HhcC---chhHHHHHHHHHHHHHHHHhChh-hhhhhhHHHHHh-hhc----CCc-hHHHHHHHHHHHHhccccchhHHHH
Q 015150 269 WLKD---KVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLE-MIN----NPH-YLYRMTILQAISLLAPVMGSEITCS 338 (412)
Q Consensus 269 ~l~d---~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~-~~~----~~~-~~~r~~~~~~l~~l~~~~~~~~~~~ 338 (412)
.|.. .++++.+ .+..+...++..-.+ .-.+.....+.. .+. |.+ ---|+.+-..- .+ .-
T Consensus 284 ~L~~rk~~DedL~e-dl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~--------~~--~~ 352 (429)
T cd00256 284 SLEQRKYDDEDLTD-DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLN--------EK--NY 352 (429)
T ss_pred HHhcCCCCcHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHH--------hc--ch
Confidence 2322 1233333 222222222211000 000111111111 111 111 11122222211 11 11
Q ss_pred hhHHHHHhhcC-CCCchHHHHHHHHHHHHhhhhch--HHHH-hhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 339 QLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ--SVVE-KSIRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 339 ~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~--~~~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
.++..+.+.+. +.++.+-..|+.=+|.++..+.. .... -..-..+..+++++|++||..|..|+..+.
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34555566653 34556666777788888877632 2221 235667888899999999999999998774
No 196
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=96.51 E-value=0.18 Score=45.06 Aligned_cols=88 Identities=16% Similarity=0.030 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhc-cCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChH
Q 015150 3 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT-QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWR 81 (412)
Q Consensus 3 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~-~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~ 81 (412)
.-|-..++.+..+.. ...-..+...+..++ ++.++......+.++..-+..+ .....+.+...+.+.++|+.+.
T Consensus 2 d~r~~~~~~L~~l~~----~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~ 76 (339)
T PF12074_consen 2 DQRVLHASMLSSLPS----SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPP 76 (339)
T ss_pred cHHHHHHHHHHhCCC----cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCc
Confidence 345555666665544 113333444444444 4557777888888888888777 3446678999999999999888
Q ss_pred HHHHHHHHHHHHHH
Q 015150 82 VRYMVANQLYELCE 95 (412)
Q Consensus 82 vR~~~~~~l~~l~~ 95 (412)
+|+.-+..++....
T Consensus 77 vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 77 VRRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999876
No 197
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.47 E-value=0.21 Score=43.27 Aligned_cols=166 Identities=18% Similarity=0.179 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHhh---HHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHH---Hh
Q 015150 197 PDVRLNIISKLDQVNQVIGIDLLSQS---LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ---WL 270 (412)
Q Consensus 197 ~~vr~~~~~~l~~i~~~~~~~~~~~~---~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~---~l 270 (412)
..|-..|+.....+.+.+|++.+.++ ..|-+..++....-.||-..+..+....-.+|. .+.+.+.+++.. .+
T Consensus 69 sGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGL 147 (307)
T PF04118_consen 69 SGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGL 147 (307)
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccc
Confidence 35666777777888888777665433 356667777777778998888888887777777 555555555544 46
Q ss_pred cCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccc------h-h---HH----
Q 015150 271 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG------S-E---IT---- 336 (412)
Q Consensus 271 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~------~-~---~~---- 336 (412)
.|++.++-..+...+..+...+|.+.+...+.-.+. .++.+|..++..+..-..... . + ..
T Consensus 148 ede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 222 (307)
T PF04118_consen 148 EDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPD 222 (307)
T ss_pred ccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCC
Confidence 788999999999999999999988866554444433 456688888888766544433 0 0 00
Q ss_pred HHhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150 337 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 337 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~ 368 (412)
..-++..+...++|++.-|++.++..|-.-.+
T Consensus 223 ~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 223 PGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred ccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 22366678888999999999999988876554
No 198
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.45 E-value=0.78 Score=42.87 Aligned_cols=244 Identities=14% Similarity=0.110 Sum_probs=123.2
Q ss_pred chhHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCC-
Q 015150 2 PMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDK- 78 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~- 78 (412)
+.+|+++.+.+..+++.-.. ......+...+..-..+++-..|..|+..|..=++.+.. +...+.|.+...+..-
T Consensus 43 ~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~--~~~~i~~~L~~wl~~~~ 120 (464)
T PF11864_consen 43 SEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLRLEALIALTDNGRDIDF--FEYEIGPFLLSWLEPSY 120 (464)
T ss_pred HHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCchh--cccchHHHHHHHHHHHH
Confidence 46899999999998885433 223444445544444455556677777777665555522 3444555554433210
Q ss_pred --------------------------ChHHHHHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCC-hHHHHHHHHHH
Q 015150 79 --------------------------SWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDN-EAEVRIAAAGK 128 (412)
Q Consensus 79 --------------------------~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~vr~~a~~~ 128 (412)
+...-....+.+..+.+.-..- .....++..+..++... ....=..++..
T Consensus 121 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~v 200 (464)
T PF11864_consen 121 QAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSV 200 (464)
T ss_pred HHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 1111122222333333322111 11223444444444322 23333677777
Q ss_pred HHHHHHh--hCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCc-ccChhHHHHhhHHHHHHhhc--c----cChHH
Q 015150 129 VTKICRI--LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP-ILGKDATIEQLLPIFLSLLK--D----EFPDV 199 (412)
Q Consensus 129 l~~l~~~--~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~-~~~~~~~~~~l~~~l~~~l~--d----~~~~v 199 (412)
+..+..+ ++.+.+ ..++..+.....-. .....+-+++..++. +.|. ..+-.+...+. | ++..+
T Consensus 201 ldaii~y~~iP~~sl-~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-----~~i~~L~~iL~~~~~~~~~~~~~ 272 (464)
T PF11864_consen 201 LDAIITYGDIPSESL-SPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-----SAIRTLCDILRSPDPQNKRDINV 272 (464)
T ss_pred HHHHHHcCcCChHHH-HHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-----HHHHHHHHHHcccCccccccHHH
Confidence 7777663 343322 23334443332211 233333444444442 2232 33445555552 2 23344
Q ss_pred HHHHHHHHHHHHHhhchhhH------HhhHHHHHHHHhcCCCchHHHHHHHHhhHHH-hhhCh
Q 015150 200 RLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA-SQLGV 255 (412)
Q Consensus 200 r~~~~~~l~~i~~~~~~~~~------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~-~~~~~ 255 (412)
-.+|+..+..+.-..+.+.+ ...++|.+...++.++.++-..++..+..+. +.++.
T Consensus 273 lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 273 LRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGR 335 (464)
T ss_pred HhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhh
Confidence 44667777766544432221 1238899999999888888888888777777 54444
No 199
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=96.45 E-value=0.59 Score=41.72 Aligned_cols=106 Identities=14% Similarity=0.075 Sum_probs=70.4
Q ss_pred HHHHHHHhHHHHhhccCchhhhhhhHHHHHhhc-cCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHH
Q 015150 43 VRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121 (412)
Q Consensus 43 ~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~-~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 121 (412)
.|...++++..+.. ......+...+..+. ++.+......++.+++.-...+ .....+.++..+.+.++|..+.+
T Consensus 3 ~r~~~~~~L~~l~~----~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~v 77 (339)
T PF12074_consen 3 QRVLHASMLSSLPS----SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPV 77 (339)
T ss_pred HHHHHHHHHHhCCC----cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcH
Confidence 45555555554443 224455555555554 4567788889999998888777 34445789999999999999999
Q ss_pred HHHHHHHHHHHHH---hhCHHHHHHhhhhhHHHhc
Q 015150 122 RIAAAGKVTKICR---ILNPELAIQHILPCVKELS 153 (412)
Q Consensus 122 r~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~~~ 153 (412)
|+.-+.+++.... ......+...++|.+.+.+
T Consensus 78 R~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 78 RRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSL 112 (339)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHH
Confidence 9999999998776 1112233344555555443
No 200
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.48 Score=40.21 Aligned_cols=58 Identities=26% Similarity=0.306 Sum_probs=42.9
Q ss_pred CCCchHHHHHHHHHHHHhhh-hchHHH-HhhHHHHHHhh-cCCCCccHHHHHHHHHHHhHH
Q 015150 350 DRVPNIKFNVAKVLQSLIPI-VDQSVV-EKSIRPCLVEL-SEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 350 d~~~~vR~~~~~~l~~l~~~-~~~~~~-~~~i~~~l~~l-~~d~~~~vr~~a~~al~~~~~ 407 (412)
++++.+|...+.+|-.++.. .|.+.+ ...+.|.+..+ ...+++++|..+......+..
T Consensus 255 epdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 255 EPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred CCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 66788999999999888644 455544 35677777774 566888999888877766654
No 201
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.43 E-value=0.31 Score=54.42 Aligned_cols=262 Identities=15% Similarity=0.198 Sum_probs=149.2
Q ss_pred HHHHHHHHhccCCchHHHHHHHHhHHHHhhcc----Cc-h-----hhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHH
Q 015150 27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLL----EP-Q-----DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 96 (412)
Q Consensus 27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~----~~-~-----~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~ 96 (412)
.+++.+...+..++..++..+..++..+.... +. + .....+++.+.++|.++.|.-|..++..++.+...
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 46677778888888889998888888776542 21 1 23455888889999999999999999999988887
Q ss_pred hCCCC---cccchHHHHHHhcCCChHHHHH----HHHHHHHHHHHhh----CHH----HHHHhhhhhHHHhccCCcHHHH
Q 015150 97 VGPEP---TRSDVVPAYVRLLRDNEAEVRI----AAAGKVTKICRIL----NPE----LAIQHILPCVKELSSDSSQHVR 161 (412)
Q Consensus 97 ~~~~~---~~~~l~~~l~~~l~d~~~~vr~----~a~~~l~~l~~~~----~~~----~~~~~~~~~l~~~~~d~~~~vr 161 (412)
+.... +..+++..+...+.|...++.. .+-..+..+...+ ..+ .....++..+..-+.+++..||
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 66221 1223455555555554433332 2222222222221 111 2233344455555677888999
Q ss_pred HHHHHHHHhcCcccChhHHHHhhHHHHHHhh---------cccChHHHHHHHHHHHHHHHhhchhhH--------HhhHH
Q 015150 162 SALATVIMGMAPILGKDATIEQLLPIFLSLL---------KDEFPDVRLNIISKLDQVNQVIGIDLL--------SQSLL 224 (412)
Q Consensus 162 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l---------~d~~~~vr~~~~~~l~~i~~~~~~~~~--------~~~~~ 224 (412)
..+...+..+++..|.+. ..++..+.+++ ..-.-.++..-+.++.-.. .++++.+ ....+
T Consensus 1144 ~~~~~~L~~i~~~s~~~v--~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~-~l~p~~f~~~~~l~~l~~~~ 1220 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKSV--VKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCL-SLGPCLFDFTEELYRLKRFL 1220 (3550)
T ss_pred HHHHHHHHHHHHHcCCcH--HHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHH-HcCCcccCchHHHHHHHHHH
Confidence 999999999988776543 22333333332 2222233333332222222 1222211 00111
Q ss_pred HHHHH-----------Hhc----CCCchHHHHHHHHhhHHHhhhCh-----hhHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 015150 225 PAIVE-----------LAE----DRHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLKDKVYSIRDAAANN 284 (412)
Q Consensus 225 ~~l~~-----------~~~----d~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 284 (412)
..+.. ... ...-+.|.++.+.+........- ..+.+.++.++.+.+..+.+++.+.+...
T Consensus 1221 ~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~ 1300 (3550)
T KOG0889|consen 1221 IALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEG 1300 (3550)
T ss_pred HHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11111 111 11234577777777665543321 22456788888888888899999999888
Q ss_pred HHHHHHH
Q 015150 285 VKRLAEE 291 (412)
Q Consensus 285 l~~l~~~ 291 (412)
+..+...
T Consensus 1301 l~~v~~~ 1307 (3550)
T KOG0889|consen 1301 LRKVLAQ 1307 (3550)
T ss_pred HHhhhhc
Confidence 8776653
No 202
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.77 Score=42.38 Aligned_cols=293 Identities=13% Similarity=0.116 Sum_probs=159.5
Q ss_pred hHHHHHhhccCCC---hHHHHHHHHHHHHHHH--HhCCCCcc--cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH-
Q 015150 67 ILPVIVNFSQDKS---WRVRYMVANQLYELCE--AVGPEPTR--SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP- 138 (412)
Q Consensus 67 l~~~l~~l~~d~~---~~vR~~~~~~l~~l~~--~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~- 138 (412)
++..+..++++++ ..+-..+.+++++... .+..+... .-++...+..+++ ...-..|..++..+......
T Consensus 154 ~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~--~~lhe~At~cic~ll~~~~~~ 231 (559)
T KOG2081|consen 154 VLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSD--DELHEEATECICALLYCSLDR 231 (559)
T ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHccc--chhhHHHHHHHHHHHHHhhhh
Confidence 4444555554432 4444555555555443 22222111 1345555666663 34455566666554432211
Q ss_pred HH---HH------HhhhhhHHHh-ccCCcHHHHHHHHHHHHhcCcccChhHHH--HhhHHHHHH---hhcccChHHHHHH
Q 015150 139 EL---AI------QHILPCVKEL-SSDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLS---LLKDEFPDVRLNI 203 (412)
Q Consensus 139 ~~---~~------~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~---~l~d~~~~vr~~~ 203 (412)
+. +. ..+++...++ ....+..-+.+.+..+..+++.+-..... +..++.+.. .-...+.+|-...
T Consensus 232 ~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~S 311 (559)
T KOG2081|consen 232 SEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEAS 311 (559)
T ss_pred hccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhh
Confidence 10 11 1123333333 23445556677777777776654221111 233333322 2334455666665
Q ss_pred HHHHHHHHHhhch---hhHHhhHHHHHHHH-------h------------cCCCchHHHHHHHHhhHHHhhhChhhHHHH
Q 015150 204 ISKLDQVNQVIGI---DLLSQSLLPAIVEL-------A------------EDRHWRVRLAIIEYIPLLASQLGVGFFDDK 261 (412)
Q Consensus 204 ~~~l~~i~~~~~~---~~~~~~~~~~l~~~-------~------------~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 261 (412)
......+.+.+.. +.....+-|.+.++ + +++..+.|......+.-++-.+|......
T Consensus 312 F~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk- 390 (559)
T KOG2081|consen 312 FNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLK- 390 (559)
T ss_pred HHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHH-
Confidence 5555555444321 11111122222222 1 11123578888888888888888754332
Q ss_pred HHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCC--chHHHHHHHHHHHHhccccchhH-HH
Q 015150 262 LGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEI-TC 337 (412)
Q Consensus 262 l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~~~-~~ 337 (412)
..+..+.. ...|+.-++++-.+..+++++.++ .+.++|.+++.+.+- ...+|.+++..+|.+++.....+ ..
T Consensus 391 --~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~--e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~l 466 (559)
T KOG2081|consen 391 --QMYIRLKENNASWEEVEAALFILRAVAKNVSPE--ENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELL 466 (559)
T ss_pred --HHHHHHccCCCchHHHHHHHHHHHHHhccCCcc--ccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHH
Confidence 33344333 678999999999999999988766 467888888877653 35599999999999998887653 44
Q ss_pred HhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150 338 SQLLPVVINASKDRVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 338 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~ 368 (412)
+-++..+...+.+.. .-..++.+...+..
T Consensus 467 e~v~~~~~~~~~~~~--~as~~a~~~~~i~~ 495 (559)
T KOG2081|consen 467 EPVLRYIRQGLQLKR--LASAAALAFHRICS 495 (559)
T ss_pred HHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence 455566666676655 44455555555543
No 203
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=96.42 E-value=0.085 Score=40.51 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=85.2
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhc-cCCCh
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS-QDKSW 80 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~-~d~~~ 80 (412)
|.||.+.+.++..++...-++. |+.+++.+..+.+.+ +......+..+..+.+.+.+ .. .+.+.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~-Wp~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~ 66 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQ-WPDFLEDLLQLLQSS-PQHLELVLRILRILPEEITD-------------FRRSSLSQ 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHT-------------SHCCHSHH
T ss_pred hhHHHHHHHHHHHHHHHHChhh-CchHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHh-------------hhchhhhH
Confidence 4689999999999998765444 666777776666663 45555666666666554321 10 11122
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC----hHHHHHHHHHHHHHHHHhhCHHHHHHh-hhhhHHHhccC
Q 015150 81 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN----EAEVRIAAAGKVTKICRILNPELAIQH-ILPCVKELSSD 155 (412)
Q Consensus 81 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~~~~d 155 (412)
..|...-+.+..-. +.++..+.+.++.. ..++...+++++..+.+..+.+...+. +++.+.+++.+
T Consensus 67 ~r~~~l~~~l~~~~---------~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~ 137 (148)
T PF08389_consen 67 ERRRELKDALRSNS---------PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQS 137 (148)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCC
Confidence 33444333443332 33445554444322 378889999999998887777765553 77778777754
Q ss_pred CcHHHHHHHHHHH
Q 015150 156 SSQHVRSALATVI 168 (412)
Q Consensus 156 ~~~~vr~~~~~~l 168 (412)
++ .+..|++++
T Consensus 138 ~~--~~~~A~~cl 148 (148)
T PF08389_consen 138 PE--LREAAAECL 148 (148)
T ss_dssp CC--CHHHHHHHH
T ss_pred HH--HHHHHHHhC
Confidence 43 367776654
No 204
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.42 E-value=0.047 Score=47.09 Aligned_cols=75 Identities=23% Similarity=0.152 Sum_probs=52.0
Q ss_pred hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC---c-----ccchHHHHHHhcC--------CChHHHHHH
Q 015150 61 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---T-----RSDVVPAYVRLLR--------DNEAEVRIA 124 (412)
Q Consensus 61 ~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~---~-----~~~l~~~l~~~l~--------d~~~~vr~~ 124 (412)
+.....++|.++.++.|.++.+|..++++|..+....+... . .+.+.+.+..++. ++...+-..
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ 193 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA 193 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence 34566789999999999999999999999999988766444 1 1223444444444 555666667
Q ss_pred HHHHHHHHHHh
Q 015150 125 AAGKVTKICRI 135 (412)
Q Consensus 125 a~~~l~~l~~~ 135 (412)
+..++..+.+.
T Consensus 194 ay~~L~~L~~~ 204 (282)
T PF10521_consen 194 AYPALLSLLKT 204 (282)
T ss_pred HHHHHHHHHHh
Confidence 77777666554
No 205
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=1.3 Score=43.35 Aligned_cols=358 Identities=11% Similarity=0.071 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCc-----hHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhc----
Q 015150 5 RRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ-----DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS---- 75 (412)
Q Consensus 5 R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~-----~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~---- 75 (412)
|+.....+...-..++ +...+.+...+.+++.+.+ -..-.+++..+..++.+.+..+ ..-+|-+.+.+
T Consensus 441 R~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asik 517 (982)
T KOG2022|consen 441 RKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASIK 517 (982)
T ss_pred HHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccccc
Confidence 3333333333333334 3445555556666665443 2234566788889998887643 22244444332
Q ss_pred -cCCChHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHH
Q 015150 76 -QDKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKE 151 (412)
Q Consensus 76 -~d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~ 151 (412)
+-.++..-..+...+|.++..+++.. ..+..+|.+.+.+..+.. -..+...+..+++.+..+ ++...++.....
T Consensus 518 ~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e 595 (982)
T KOG2022|consen 518 LSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCYE 595 (982)
T ss_pred cccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHHH
Confidence 22477888889999999999888765 456789999998875443 344555688888877654 333334444333
Q ss_pred hc--cCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHh-------hcc--cChHHHHHHHH---HHHHHHHhhc-h
Q 015150 152 LS--SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL-------LKD--EFPDVRLNIIS---KLDQVNQVIG-I 216 (412)
Q Consensus 152 ~~--~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-------l~d--~~~~vr~~~~~---~l~~i~~~~~-~ 216 (412)
.+ ..-....|..+..++|.+.+....+...+++...+... +.. ++++-+...+- ++..+...+. +
T Consensus 596 ~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~ 675 (982)
T KOG2022|consen 596 VLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINK 675 (982)
T ss_pred HhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 33 23345678889999999888777665554433322221 111 12222222221 2222222211 0
Q ss_pred ---------------------hhHHhhHHHHHHHHhcC--CCchHHHHHHHHhhHHHhhhChhh---HHHHHHHHHHHHh
Q 015150 217 ---------------------DLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWL 270 (412)
Q Consensus 217 ---------------------~~~~~~~~~~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l 270 (412)
-.+...++|.+.+.++- .+..+-.+++..+..=....+..+ ..+.+.+++..+.
T Consensus 676 ~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~ 755 (982)
T KOG2022|consen 676 KDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFL 755 (982)
T ss_pred CccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhc
Confidence 01234556666555431 222333333333332222333331 2244555555533
Q ss_pred cCchhHHHHHHHHHHHHHH-HHhChhhh-------hhhhHHHHHhhhc----CCchHHHHHHHHHHHHhccccch-----
Q 015150 271 KDKVYSIRDAAANNVKRLA-EEFGPDWA-------MQHIVPQVLEMIN----NPHYLYRMTILQAISLLAPVMGS----- 333 (412)
Q Consensus 271 ~d~~~~vr~~a~~~l~~l~-~~~~~~~~-------~~~~l~~l~~~~~----~~~~~~r~~~~~~l~~l~~~~~~----- 333 (412)
..+.... +.....++ ...+.+.. ....+.....++. .++.++-...+.++..+.+..+.
T Consensus 756 ~~~~a~t----l~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~ 831 (982)
T KOG2022|consen 756 TSCLAVT----LSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPS 831 (982)
T ss_pred cchHHHH----HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccc
Confidence 3322111 11111111 11111100 0111111111222 23456667777777777654432
Q ss_pred -hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc
Q 015150 334 -EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 371 (412)
Q Consensus 334 -~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 371 (412)
..|..-+++..+.+++.+++-.-+++.+.+..+...-+
T Consensus 832 ~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~ 870 (982)
T KOG2022|consen 832 MLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYAT 870 (982)
T ss_pred hHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcc
Confidence 24666788888899999988877788888887765433
No 206
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.26 E-value=0.91 Score=41.58 Aligned_cols=253 Identities=11% Similarity=0.080 Sum_probs=130.2
Q ss_pred ccCCcHHHHHHHHHHHHhcCcccChhH----HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhh-c-hhhHHhhHHHH
Q 015150 153 SSDSSQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-G-IDLLSQSLLPA 226 (412)
Q Consensus 153 ~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~-~-~~~~~~~~~~~ 226 (412)
..|++|.--..+.+.+..+......+. +...++-.+..+++.+|+.-|......+..+-... + ...+.+.+...
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~ 178 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI 178 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345666655556666655544433222 34566666777777777877777766666654332 2 12233444444
Q ss_pred HHHHhcC-CCchHHHHHHHHhhHHHhhhC---hhhHHHHHHHHHHHHhcCchhH-HHHHHHHHHHHHHHHhChhhhhhhh
Q 015150 227 IVELAED-RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQHI 301 (412)
Q Consensus 227 l~~~~~d-~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~ 301 (412)
+.++..+ ....-=..+++.++.+...+. ++.....+...++.+.+.+... -......++..+++.- ..+...+
T Consensus 179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd--p~l~~~~ 256 (409)
T PF01603_consen 179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD--PSLAEPV 256 (409)
T ss_dssp HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--chhHHHH
Confidence 4444432 222233345556666665543 1222333344444444544333 2344444555444421 1223445
Q ss_pred HHHHHhhhcCCchHHHHHHHHHHHHhccccchhHH---HHhhHHHHHhhcCCCCchHHHHHHHHHHH--Hhhhhc--hHH
Q 015150 302 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT---CSQLLPVVINASKDRVPNIKFNVAKVLQS--LIPIVD--QSV 374 (412)
Q Consensus 302 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~---~~~il~~l~~~l~d~~~~vR~~~~~~l~~--l~~~~~--~~~ 374 (412)
+..+++..--.+..-...++.-+..+.+.++.+.+ ...++..+..++++++..|-..|+..+.. +...+. ...
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~ 336 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRV 336 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHH
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHH
Confidence 55555555556666677888888888887776543 44566667777888888887777654421 122111 122
Q ss_pred HHhhHHHHHHhh-cCCCCccHHHHHHHHHHHhHH
Q 015150 375 VEKSIRPCLVEL-SEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 375 ~~~~i~~~l~~l-~~d~~~~vr~~a~~al~~~~~ 407 (412)
..+.+.|.|.+. .++=+..||..+..++..+.+
T Consensus 337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334555555553 344466788888888887765
No 207
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=96.13 E-value=0.66 Score=38.78 Aligned_cols=200 Identities=17% Similarity=0.146 Sum_probs=106.6
Q ss_pred hhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHH--
Q 015150 191 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-- 268 (412)
Q Consensus 191 ~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-- 268 (412)
+-+..++++....++.|+.++..-. ...+.++..+..+.+.+....+..+...+..+-+.-... .+.+.+++..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f~~L~~~L~~~~ 84 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--FPFLQPLLLLLI 84 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--HHHHHHHHHHHH
Confidence 4555667777777777777765521 222445555566666665555444544444444332221 1223333222
Q ss_pred -------HhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhh-cCCchHHHHHHHHHHHHhccccchh--HHHH
Q 015150 269 -------WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSE--ITCS 338 (412)
Q Consensus 269 -------~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~ 338 (412)
.-.+..+++..+...++..++...+. ....+++.+...+ ++.+...+..+++.+..+++.--.+ ..+.
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~ 162 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWK 162 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 01244555666656677777765543 3456778888888 6777788888888888887322222 2333
Q ss_pred hhHHHHHhhcCCCCchHHHHHHHHHHHHhhh-hch---HHHHhhHHHHHHhhcCCCCccHHHHHH
Q 015150 339 QLLPVVINASKDRVPNIKFNVAKVLQSLIPI-VDQ---SVVEKSIRPCLVELSEDPDVDVRFFAT 399 (412)
Q Consensus 339 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~-~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~ 399 (412)
.+.+.+ -.|..|.|-...+..+..+... ++. +.+...++..+.+..+..+.++...+.
T Consensus 163 vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~ 224 (234)
T PF12530_consen 163 VLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWT 224 (234)
T ss_pred HHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHH
Confidence 343433 2334444444333333322211 111 245677888888887777755333333
No 208
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=96.12 E-value=2.7 Score=46.73 Aligned_cols=250 Identities=17% Similarity=0.212 Sum_probs=148.5
Q ss_pred HHHHHhccCCchHHHHHHHHhHHHHhhccCc--------hhhhhhhHHHHHhh-ccCCChHHHHHHHHHHHHHHHHhCCC
Q 015150 30 SIFEELTQDDQDSVRLLAVEGCGALGKLLEP--------QDCVAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPE 100 (412)
Q Consensus 30 ~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~--------~~~~~~l~~~l~~l-~~d~~~~vR~~~~~~l~~l~~~~~~~ 100 (412)
..+...+..+++++|..+...+..+..+... -.....++..+..+ ..|+++.+|......+. ..+...
T Consensus 484 ~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~ 560 (2341)
T KOG0891|consen 484 QCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQ 560 (2341)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhh
Confidence 3355567888889999987777766665432 11244455555544 56888888888777665 222233
Q ss_pred CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHH----hcc----CCcHHHHHHHHHHHHhcC
Q 015150 101 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE----LSS----DSSQHVRSALATVIMGMA 172 (412)
Q Consensus 101 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~----~~~----d~~~~vr~~~~~~l~~l~ 172 (412)
...+..+......+.|+.-.++.++...++.++..-+ .+++|.+.. +.+ +.-..+....+.-+..+.
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i 635 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELI 635 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHH
Confidence 3445677778888899999999999999998766432 223444432 111 111112222222222111
Q ss_pred cc--cChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh--hHHhhHHHHHHHHhcC-CCchHHHHHHHHhh
Q 015150 173 PI--LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED-RHWRVRLAIIEYIP 247 (412)
Q Consensus 173 ~~--~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~ 247 (412)
.. .....+...++-.+...+.|.++.+-..+...++.++...|.+ ...+.+++.+.+.+.| .+..-|.++.++++
T Consensus 636 ~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~ 715 (2341)
T KOG0891|consen 636 ISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALG 715 (2341)
T ss_pred HHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhh
Confidence 10 1111222344455556677888888889999999999888832 3334566666665554 45667788888888
Q ss_pred HHHhhhCh----hhHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Q 015150 248 LLASQLGV----GFFDDKLGALCMQWLKD-KVYSIRDAAANNVKR 287 (412)
Q Consensus 248 ~l~~~~~~----~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~ 287 (412)
.+....|- ....+.++..+..-+.. ....+|.++...++.
T Consensus 716 ~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~ 760 (2341)
T KOG0891|consen 716 QLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGL 760 (2341)
T ss_pred hhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhh
Confidence 88776542 22234455554444433 345588888888774
No 209
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=1.5 Score=42.45 Aligned_cols=238 Identities=15% Similarity=0.145 Sum_probs=128.1
Q ss_pred CChHHHHHHHHHHHHHHH-Hh----hCHH-HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHH
Q 015150 116 DNEAEVRIAAAGKVTKIC-RI----LNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFL 189 (412)
Q Consensus 116 d~~~~vr~~a~~~l~~l~-~~----~~~~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 189 (412)
|-+.-+++-|+.+-..++ .. ++-+ .+.+.++|-+. ...+...-.|+.++..++.-...--+......+...+.
T Consensus 454 ~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~l 532 (978)
T KOG1993|consen 454 DLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFL 532 (978)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHH
Confidence 344555655554433322 22 2222 23344555555 22334557788899888877665444555556677788
Q ss_pred Hhhccc-ChHHHHHHHHHHHHHHHhhc--hhhHH---hhHHHHHHHHhcC-CCchHHHHHHHHhhHHHhhhChhh--HHH
Q 015150 190 SLLKDE-FPDVRLNIISKLDQVNQVIG--IDLLS---QSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FDD 260 (412)
Q Consensus 190 ~~l~d~-~~~vr~~~~~~l~~i~~~~~--~~~~~---~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~--~~~ 260 (412)
++++|+ |-.||.++++.+........ ++.+. +.+...+.++++. .....|..++..++.+....+... +..
T Consensus 533 nLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~ 612 (978)
T KOG1993|consen 533 NLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYAS 612 (978)
T ss_pred HhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 899998 77899999999998876643 33332 2223333333332 334567777777777766655422 122
Q ss_pred HHHHHHHHHh--cCchhHHHHHHHHHHHHHHHHhChhhh-hhhhHHHHHhhhcCCc-h---HHHHHHHHHHHHhc---cc
Q 015150 261 KLGALCMQWL--KDKVYSIRDAAANNVKRLAEEFGPDWA-MQHIVPQVLEMINNPH-Y---LYRMTILQAISLLA---PV 330 (412)
Q Consensus 261 ~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~l~~l~~~~~~~~-~---~~r~~~~~~l~~l~---~~ 330 (412)
.++..+-.+- ..+.+-.|.+.+.++..++..+|.+.. ...++=.+.++..|++ + -.-+-+++.-+.+. ..
T Consensus 613 ~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~ 692 (978)
T KOG1993|consen 613 TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQK 692 (978)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccc
Confidence 2222222221 234566888899999999999986532 2233333444555543 1 12233333333332 22
Q ss_pred cchhHHHHhhHHHHHhhcCCCCchHH
Q 015150 331 MGSEITCSQLLPVVINASKDRVPNIK 356 (412)
Q Consensus 331 ~~~~~~~~~il~~l~~~l~d~~~~vR 356 (412)
+.++ .-.+.|.+...+.-...+.|
T Consensus 693 l~p~--ll~L~p~l~~~iE~ste~L~ 716 (978)
T KOG1993|consen 693 LTPE--LLLLFPHLLYIIEQSTENLP 716 (978)
T ss_pred cCHH--HHHHHHHHHHHHHhhhhhHH
Confidence 3333 23455666555554444444
No 210
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=1.5 Score=42.13 Aligned_cols=307 Identities=15% Similarity=0.201 Sum_probs=169.2
Q ss_pred hccCCChHHHHHHHHHHHHHHHHhCCCCcc-cchHHHHHHhcCCChHHHHHHHHHHHHHHHH-hhCHHHHHHhhhhhH--
Q 015150 74 FSQDKSWRVRYMVANQLYELCEAVGPEPTR-SDVVPAYVRLLRDNEAEVRIAAAGKVTKICR-ILNPELAIQHILPCV-- 149 (412)
Q Consensus 74 l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~~l-- 149 (412)
+.+..++.+-..++++++....-.+-.... +..++.+.++++ -.++|.+|+.|+.++.. ...|.+-. .++..+
T Consensus 201 y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL-~lln~L~q 277 (980)
T KOG2021|consen 201 YENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKL-ALLNMLNQ 277 (980)
T ss_pred HhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHH-HHHHHHHH
Confidence 334457888889999998888766544432 346788888877 57899999999987654 34443221 122222
Q ss_pred -HH----hccC--CcHHHHHHHHHHHHhcCccc-----------ChhH------HHHhhHHHHHHhhcccChHHHHHHHH
Q 015150 150 -KE----LSSD--SSQHVRSALATVIMGMAPIL-----------GKDA------TIEQLLPIFLSLLKDEFPDVRLNIIS 205 (412)
Q Consensus 150 -~~----~~~d--~~~~vr~~~~~~l~~l~~~~-----------~~~~------~~~~l~~~l~~~l~d~~~~vr~~~~~ 205 (412)
.+ ...| .+.++-..+.+.+...+..+ .... ....++|++.+.+.+++.++-.+...
T Consensus 278 ~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifp 357 (980)
T KOG2021|consen 278 TLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFP 357 (980)
T ss_pred HHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 11 1122 44555555544444433211 1110 11246788899988888777766666
Q ss_pred HHHHHHHhhchh---------hHHhhHHHHHHHHh------cCCC----------chHHHHHHHHhhHHHhhhChhhHHH
Q 015150 206 KLDQVNQVIGID---------LLSQSLLPAIVELA------EDRH----------WRVRLAIIEYIPLLASQLGVGFFDD 260 (412)
Q Consensus 206 ~l~~i~~~~~~~---------~~~~~~~~~l~~~~------~d~~----------~~vr~~~~~~l~~l~~~~~~~~~~~ 260 (412)
-+......+... .+...+...+.+++ +|.+ ..+|... +.+......+.++.+..
T Consensus 358 Flsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkL-k~fqdti~~idpsl~l~ 436 (980)
T KOG2021|consen 358 FLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKL-KNFQDTIVVIDPSLFLN 436 (980)
T ss_pred HHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHH-HHHHHHHHhcCHHHHHH
Confidence 555544333221 11122223333332 2222 1244433 23333333344554444
Q ss_pred HHHHHHHHH---hcCchhHHHHHHHHHHHHHHHHhChhhh------------hhhhHHHHHh--hhcCCchHHHHHHHHH
Q 015150 261 KLGALCMQW---LKDKVYSIRDAAANNVKRLAEEFGPDWA------------MQHIVPQVLE--MINNPHYLYRMTILQA 323 (412)
Q Consensus 261 ~l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~~------------~~~~l~~l~~--~~~~~~~~~r~~~~~~ 323 (412)
.+...+-.. ....+|..-+.|+..+-.+.+.+..+.+ ....++.++. ...+++..+....++.
T Consensus 437 ~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ 516 (980)
T KOG2021|consen 437 NIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMEL 516 (980)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHH
Confidence 444333332 3456777888888877777766543211 1234444442 4556778888888888
Q ss_pred HHHhccccchhHHHHhhHHHHHhh------cCCCCchHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhc
Q 015150 324 ISLLAPVMGSEITCSQLLPVVINA------SKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELS 387 (412)
Q Consensus 324 l~~l~~~~~~~~~~~~il~~l~~~------l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~ 387 (412)
+.+-...++.+ ..-+|.++.. +.+++.+||..+.-....+.+.+... .+.+.++..+..++
T Consensus 517 ivRY~kff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 517 IVRYNKFFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred HHHHHHHHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88766555543 2344544443 45668899999998888887765543 23344444444433
No 211
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.93 E-value=1.3 Score=40.55 Aligned_cols=251 Identities=11% Similarity=0.111 Sum_probs=141.2
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh-CHH-HHHHhhhhh
Q 015150 75 SQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NPE-LAIQHILPC 148 (412)
Q Consensus 75 ~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~-~~~~~~~~~ 148 (412)
..|++|..-..+-+.|..+......+. .....+..+..++.++++.-|......+..+-... +.. .+...+...
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~ 178 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI 178 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456778877777777777776555433 44567888889999999999999999998865433 322 334444455
Q ss_pred HHHhcc-CCcHHHHHHHHHHHHhcCcccC---hhHHHHhhHHHHHHhhcccC-hHHHHHHHHHHHHHHHhhchhhHHhhH
Q 015150 149 VKELSS-DSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQSL 223 (412)
Q Consensus 149 l~~~~~-d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~~~~~l~~i~~~~~~~~~~~~~ 223 (412)
+.+.+. +....--..+.+.++.+...+. ++.....+...+..+.+... ..--.....++..+... + ..+...+
T Consensus 179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k-d-p~l~~~~ 256 (409)
T PF01603_consen 179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK-D-PSLAEPV 256 (409)
T ss_dssp HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-C-chhHHHH
Confidence 554443 2333334445666666655433 22222233333444444332 22233344455555433 1 2233556
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHH---HHHHHHHHHhcCchhHHHHHHHHHHHH--HHHHhChhhhh
Q 015150 224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLKDKVYSIRDAAANNVKR--LAEEFGPDWAM 298 (412)
Q Consensus 224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~--l~~~~~~~~~~ 298 (412)
+..+.+.+--.+..-....+..+..+...+++..+.. .+...+..++++++..|-+.|+..+.. +...+.. ..
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~--~~ 334 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ--NS 334 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC--TH
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh--Ch
Confidence 6777777776777777778888888888877665543 345556677899999999998876532 1222211 12
Q ss_pred hhhHHHHHhhh-----cCCchHHHHHHHHHHHHhcc
Q 015150 299 QHIVPQVLEMI-----NNPHYLYRMTILQAISLLAP 329 (412)
Q Consensus 299 ~~~l~~l~~~~-----~~~~~~~r~~~~~~l~~l~~ 329 (412)
+.++|.+...+ ++.+..+|..+..++..+.+
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33445444433 24456788888888888765
No 212
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.85 E-value=0.058 Score=38.91 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=45.0
Q ss_pred HHHHHHHhc-cCCchHHHHHHHHhHHHHhhccCchhh---hhhhHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 015150 28 IMSIFEELT-QDDQDSVRLLAVEGCGALGKLLEPQDC---VAHILPVIVNFSQDKSWRVRYMVANQLYELCE 95 (412)
Q Consensus 28 l~~~l~~l~-~~~~~~~r~~a~~~l~~i~~~~~~~~~---~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~ 95 (412)
++..+..++ .+.++.+-..||.-++.++++.|.... .-..-..++++++++++.||..|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 555566666 444666677788888888888755311 12255667788888888888888888877654
No 213
>PF05536 Neurochondrin: Neurochondrin
Probab=95.80 E-value=1.8 Score=41.17 Aligned_cols=178 Identities=19% Similarity=0.245 Sum_probs=114.0
Q ss_pred ChHHHHHHHHHHHHHHHHhhCHH----HHHHhhhhhHHHhccCCcH-HHHHHHHHHHHhcCccc-ChhHHH-HhhHHHHH
Q 015150 117 NEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQ-HVRSALATVIMGMAPIL-GKDATI-EQLLPIFL 189 (412)
Q Consensus 117 ~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~-~~~~~~-~~l~~~l~ 189 (412)
+....+..|+..|..|+. .++ +-.-.-+|.+.+.+...+. .+-.-+.+++..++..- |..... ..-+|.+.
T Consensus 69 ~~~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ 146 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALC 146 (543)
T ss_pred CHHHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHH
Confidence 345677888888888776 232 2233467888888766555 77777888888877432 333322 34566666
Q ss_pred HhhcccChHHHHHHHHHHHHHHHhhchhhH------HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC--------h
Q 015150 190 SLLKDEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--------V 255 (412)
Q Consensus 190 ~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--------~ 255 (412)
+.+.+ .+.....++..+..+....+.+.+ ...+++.+........-..+..++..++.+....+ .
T Consensus 147 ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~ 225 (543)
T PF05536_consen 147 EIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPS 225 (543)
T ss_pred HHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCCh
Confidence 66655 556667777777777665553222 23455556655555555667777777777665552 1
Q ss_pred hhHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHhChhhh
Q 015150 256 GFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWA 297 (412)
Q Consensus 256 ~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~ 297 (412)
..+...+...+...++. ..+.-|..++...+.+.+.+|.+|.
T Consensus 226 ~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl 268 (543)
T PF05536_consen 226 PKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWL 268 (543)
T ss_pred hhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhh
Confidence 23455666666666665 4566899999999999998888764
No 214
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.79 E-value=0.3 Score=43.39 Aligned_cols=135 Identities=17% Similarity=0.238 Sum_probs=74.4
Q ss_pred HHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCC-------CchHHHHHHHHhhHHHhhh--Chhh
Q 015150 187 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQL--GVGF 257 (412)
Q Consensus 187 ~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~-------~~~vr~~~~~~l~~l~~~~--~~~~ 257 (412)
.+.+.+.+++...|..++..|. ...| ...++|.+..++.+. +...-...+..+..+...- .-+.
T Consensus 182 ~It~a~~~~~~~~r~~aL~sL~---tD~g----l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~ 254 (343)
T cd08050 182 EITEALVGSNEEKRREALQSLR---TDPG----LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEP 254 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHHhc---cCCC----chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHH
Confidence 3344444555666655544432 2222 245566666554332 2333333333333333221 2244
Q ss_pred HHHHHHHHHHHHh----------cCchhHHHHHHHHHHHHHHHHhChh--hhhhhhHHHHHhhhcCCc--hHHHHHHHHH
Q 015150 258 FDDKLGALCMQWL----------KDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPH--YLYRMTILQA 323 (412)
Q Consensus 258 ~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~--~~~r~~~~~~ 323 (412)
+...++|.++.++ .+..|.+|..|+..++.+++.++.. .+...++..+.+.+.|++ ...+-.++..
T Consensus 255 Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~G 334 (343)
T cd08050 255 YLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVG 334 (343)
T ss_pred hHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHH
Confidence 5566788877765 3466889999999999999888764 234556656666666554 3345666666
Q ss_pred HHHhc
Q 015150 324 ISLLA 328 (412)
Q Consensus 324 l~~l~ 328 (412)
+..+.
T Consensus 335 L~~lG 339 (343)
T cd08050 335 LSALG 339 (343)
T ss_pred HHHhC
Confidence 66553
No 215
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.69 E-value=1.7 Score=40.02 Aligned_cols=217 Identities=12% Similarity=0.165 Sum_probs=116.6
Q ss_pred CCchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCCC------CcccchHH
Q 015150 38 DDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE------PTRSDVVP 108 (412)
Q Consensus 38 ~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~~------~~~~~l~~ 108 (412)
.+|+.+=++.++.+...-+...+ ......+...+...+++ ++|..-+...++++.+.+..... .+.+.++|
T Consensus 41 ~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 41 AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 44554544555555554444433 23445566666666666 46889999999999998875532 23567899
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHH---HHHHHHHhcCcccCh----hHHH
Q 015150 109 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS---ALATVIMGMAPILGK----DATI 181 (412)
Q Consensus 109 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~---~~~~~l~~l~~~~~~----~~~~ 181 (412)
.+...+...-.+.--.+++.+..+.+..+.....+.....+..++...-|+-|. +.+..+..+...-+. ....
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l 200 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQL 200 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhH
Confidence 999988876666677778888888877663323233333333344433443222 122222222211111 1223
Q ss_pred HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHH---hhHHHHHH-HHhcCCCchHHHHHHHHhhHHHhhhChh
Q 015150 182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIV-ELAEDRHWRVRLAIIEYIPLLASQLGVG 256 (412)
Q Consensus 182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~---~~~~~~l~-~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 256 (412)
+.++..+.+++.....+ ..+..-|..+...++.+.+. +.++..+. ++-+.+.++....++..++.++...|..
T Consensus 201 ~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~ 277 (435)
T PF03378_consen 201 EPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPD 277 (435)
T ss_dssp HHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHH
Confidence 46677777888765433 23667788888887765542 23333333 3334556666666666666665555554
No 216
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.67 E-value=2.1 Score=40.87 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=82.8
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHHHHhCCCC--------cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH-H
Q 015150 70 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--------TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-L 140 (412)
Q Consensus 70 ~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~--------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~ 140 (412)
.+..++.+.+...|-..++.+++++..+..+. ..+.++..+.+.+.|.++.+|..|+..+..+...-..- .
T Consensus 303 ~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~ 382 (1128)
T COG5098 303 HFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVG 382 (1128)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccc
Confidence 45567888899999999999999998876554 22468888899999999999999999999887643222 1
Q ss_pred HHHhhhhhHHHhccCCcHHHHHHHHHHHHhcC
Q 015150 141 AIQHILPCVKELSSDSSQHVRSALATVIMGMA 172 (412)
Q Consensus 141 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~ 172 (412)
-.+.+...+...++|.+..||+.++..+..+.
T Consensus 383 ~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 383 RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 23457788888999999999999999888764
No 217
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=95.66 E-value=0.6 Score=37.68 Aligned_cols=160 Identities=15% Similarity=0.151 Sum_probs=83.9
Q ss_pred HHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHH
Q 015150 242 IIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMT 319 (412)
Q Consensus 242 ~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~ 319 (412)
+...++.+...+|... ....++..+-++-.+++...|.++-.+++..++.+|++.+.+ ++|.-... .+....-|.-
T Consensus 20 vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~~~~~raW 97 (198)
T PF08161_consen 20 VLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADDSQPGRAW 97 (198)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCcCCcccch
Confidence 3344444444444321 122233344455556667788999999999999999886654 44533322 1111222333
Q ss_pred HHHHHHHhccccchhHHHHhhHHHHHhhcC------CCCchHHHHHHHHH--------HHHhhhh-ch-HHHHhhHHHHH
Q 015150 320 ILQAISLLAPVMGSEITCSQLLPVVINASK------DRVPNIKFNVAKVL--------QSLIPIV-DQ-SVVEKSIRPCL 383 (412)
Q Consensus 320 ~~~~l~~l~~~~~~~~~~~~il~~l~~~l~------d~~~~vR~~~~~~l--------~~l~~~~-~~-~~~~~~i~~~l 383 (412)
.+-.+..-.....-.+|.++++|....+-+ .....+-....+++ ..++..- +. +.| ..+-+.|
T Consensus 98 LLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F-~~~a~~L 176 (198)
T PF08161_consen 98 LLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESF-PSFAKLL 176 (198)
T ss_pred hHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHH-HHHHHHH
Confidence 344444433333445778888886544321 12222222222222 2222110 11 123 5667777
Q ss_pred HhhcCCCCccHHHHHHHHHHHh
Q 015150 384 VELSEDPDVDVRFFATQALQSK 405 (412)
Q Consensus 384 ~~l~~d~~~~vr~~a~~al~~~ 405 (412)
.+.+.|. ++.|...+.|+..+
T Consensus 177 ~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 177 GNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred HHHHhcC-cchHHHHHHHHHHH
Confidence 7777775 89999999998875
No 218
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.66 E-value=0.63 Score=36.48 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhh---hhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchh
Q 015150 259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM---QHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE 334 (412)
Q Consensus 259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~ 334 (412)
.+.+..-+.++++++++.-|..++..++..++..+.+.+. ...+..+...++.++ ..++..++.++..+....+..
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3445556666777777777777777777777665554442 345555555555443 456677777777665433321
Q ss_pred ---------HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150 335 ---------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 372 (412)
Q Consensus 335 ---------~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 372 (412)
+....+++.+++.+++ ..+...++.++..+...+..
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 1233455566666665 45666777777777665443
No 219
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=95.51 E-value=0.8 Score=35.00 Aligned_cols=141 Identities=19% Similarity=0.197 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHH
Q 015150 80 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQH 159 (412)
Q Consensus 80 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~ 159 (412)
+-||...+.++..++....++. ++++++.+.+.++. ++......+..|..+.+.+.. .. -.+.+..
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~-Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~----------~~--~~~~~~~ 67 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQ-WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD----------FR--RSSLSQE 67 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT----------SH--CCHSHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhh-CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh----------hh--chhhhHH
Confidence 3578888899999988776554 67788888888777 355666666666655442211 00 0111222
Q ss_pred HHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccC----hHHHHHHHHHHHHHHHhhchhhHHh-hHHHHHHHHhcCC
Q 015150 160 VRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF----PDVRLNIISKLDQVNQVIGIDLLSQ-SLLPAIVELAEDR 234 (412)
Q Consensus 160 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~----~~vr~~~~~~l~~i~~~~~~~~~~~-~~~~~l~~~~~d~ 234 (412)
.|...-..+..- ...++..+.+.+.... .++...+++++..+....+.+.+.+ .+++.+.+++.++
T Consensus 68 r~~~l~~~l~~~---------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~ 138 (148)
T PF08389_consen 68 RRRELKDALRSN---------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP 138 (148)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH
Confidence 233333333222 2345555555554432 7788888888888887766555433 4777777777444
Q ss_pred CchHHHHHHHH
Q 015150 235 HWRVRLAIIEY 245 (412)
Q Consensus 235 ~~~vr~~~~~~ 245 (412)
+ .+..++++
T Consensus 139 ~--~~~~A~~c 147 (148)
T PF08389_consen 139 E--LREAAAEC 147 (148)
T ss_dssp C--CHHHHHHH
T ss_pred H--HHHHHHHh
Confidence 3 36666554
No 220
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.50 E-value=1.8 Score=38.97 Aligned_cols=221 Identities=16% Similarity=0.137 Sum_probs=121.6
Q ss_pred hhhhHHHhccCCcHHHHHHHHHHHHhcCcccC-hhHHHHhhHHHH-H-Hhhcc-cChHHHHHHHHHHHHHHHhh-chhhH
Q 015150 145 ILPCVKELSSDSSQHVRSALATVIMGMAPILG-KDATIEQLLPIF-L-SLLKD-EFPDVRLNIISKLDQVNQVI-GIDLL 219 (412)
Q Consensus 145 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l-~-~~l~d-~~~~vr~~~~~~l~~i~~~~-~~~~~ 219 (412)
..+.+..++-+++..||.++...+-.+..... -....+.=++.+ . .+-+| ....-|..|++-+-.+...- |.+.+
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~ 105 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI 105 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence 33444433333338888888777755442211 011111111222 2 22233 24566788888888887763 34555
Q ss_pred HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh----
Q 015150 220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---- 295 (412)
Q Consensus 220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---- 295 (412)
...+...+..+.++++.+.|..+++.+.+++-.-+.-.....-+..+.+.+.|+..++-+..+.++-.+...-...
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~ 185 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLR 185 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhc
Confidence 6678888888999999999999999998887654332222223455566666665555555555555544322111
Q ss_pred --hhhhhhHHHHHhh----hcCCch-HHHHHHHHHHHHhcc-ccc-----hhHHHHhhHHHHHhhcCCCCchHHHHHHHH
Q 015150 296 --WAMQHIVPQVLEM----INNPHY-LYRMTILQAISLLAP-VMG-----SEITCSQLLPVVINASKDRVPNIKFNVAKV 362 (412)
Q Consensus 296 --~~~~~~l~~l~~~----~~~~~~-~~r~~~~~~l~~l~~-~~~-----~~~~~~~il~~l~~~l~d~~~~vR~~~~~~ 362 (412)
.-.+.++..+.+. .++... ..-.++..++..+.. +-| .+.+ .-+..++..+.-|.+.+|...+..
T Consensus 186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Ildl 263 (371)
T PF14664_consen 186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAILDL 263 (371)
T ss_pred CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1123344444443 122221 123344444444432 222 1111 456667888888899999999998
Q ss_pred HHHHh
Q 015150 363 LQSLI 367 (412)
Q Consensus 363 l~~l~ 367 (412)
+..+.
T Consensus 264 l~dll 268 (371)
T PF14664_consen 264 LFDLL 268 (371)
T ss_pred HHHHH
Confidence 88774
No 221
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.48 E-value=3.6 Score=46.85 Aligned_cols=281 Identities=14% Similarity=0.138 Sum_probs=159.4
Q ss_pred chHHHHHHhcCCChHHHHHHHHHHHHHHHHhh----C-HH-----HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150 105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL----N-PE-----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 174 (412)
Q Consensus 105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~-~~-----~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 174 (412)
.+++.+.+.+..++.+++..+..++..+.... + ++ +....+++.+.+++.|+.|.-|...+..++.+...
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 47888999999999999999999998775532 2 11 45667888888899999999999998888877766
Q ss_pred cChhHHH---HhhHHHHHHhhcccChHH--------HHHHHHHHHHHHHhhchh----hHHhhHHHHHHHHhcCCCchHH
Q 015150 175 LGKDATI---EQLLPIFLSLLKDEFPDV--------RLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVR 239 (412)
Q Consensus 175 ~~~~~~~---~~l~~~l~~~l~d~~~~v--------r~~~~~~l~~i~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr 239 (412)
+...... ..++..+.-.+.|...++ +.....-+..+......+ .....++..+..-+.+++..||
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 6533222 233444444455432222 212222222222222211 1224455556666788889999
Q ss_pred HHHHHHhhHHHhhhChhhH--H----HHH-HHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhh--------hhhHHH
Q 015150 240 LAIIEYIPLLASQLGVGFF--D----DKL-GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM--------QHIVPQ 304 (412)
Q Consensus 240 ~~~~~~l~~l~~~~~~~~~--~----~~l-~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--------~~~l~~ 304 (412)
..+.+.+..+++..|.+.. . +.+ .|++..-+..-...+...-+.+...++. .+++.+. ...+..
T Consensus 1144 ~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~-l~p~~f~~~~~l~~l~~~~~~ 1222 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLS-LGPCLFDFTEELYRLKRFLIA 1222 (3550)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHH-cCCcccCchHHHHHHHHHHHH
Confidence 9999999999998865421 1 111 2222222232222233333333222222 2332110 001111
Q ss_pred -----------HHhhhcCC----chHHHHHHHHHHHHhccccch-----hHHHHhhHHHHHhhcCCCCchHHHHHHHHHH
Q 015150 305 -----------VLEMINNP----HYLYRMTILQAISLLAPVMGS-----EITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364 (412)
Q Consensus 305 -----------l~~~~~~~----~~~~r~~~~~~l~~l~~~~~~-----~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~ 364 (412)
+.+....+ .-..|.++++.+........- ..+.++++-.+++.+..+.+++-..+...+.
T Consensus 1223 La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~ 1302 (3550)
T KOG0889|consen 1223 LADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLR 1302 (3550)
T ss_pred hhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 11111111 134688888888776543322 2467888889999988888888888887776
Q ss_pred HHhhh---hchHHHHhhHHHHHHhh
Q 015150 365 SLIPI---VDQSVVEKSIRPCLVEL 386 (412)
Q Consensus 365 ~l~~~---~~~~~~~~~i~~~l~~l 386 (412)
..... ++.+.....+-|.+..+
T Consensus 1303 ~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1303 KVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred hhhhccccccHHHHHhhHHHHHHhh
Confidence 66432 33333444444555555
No 222
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.48 E-value=0.27 Score=37.35 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=68.9
Q ss_pred hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHH
Q 015150 231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL 306 (412)
Q Consensus 231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~ 306 (412)
+..++|..-..++..+..= ..|+ ...+..+.+.+.+.++.|...|+..+..++++.|..+. ...++..+.
T Consensus 13 l~~~dw~~il~icD~I~~~--~~~~----k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~ 86 (144)
T cd03568 13 LTSENWGLILDVCDKVKSD--ENGA----KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK 86 (144)
T ss_pred CCCcCHHHHHHHHHHHhcC--CccH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence 3456777666666555421 1222 33566677778889999999999999999999987654 356777777
Q ss_pred hhhcC-CchHHHHHHHHHHHHhccccchh
Q 015150 307 EMINN-PHYLYRMTILQAISLLAPVMGSE 334 (412)
Q Consensus 307 ~~~~~-~~~~~r~~~~~~l~~l~~~~~~~ 334 (412)
.++.+ .+..|+..++..+...+..+..+
T Consensus 87 kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 87 KLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 77777 56778888888888877666543
No 223
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.31 E-value=2.3 Score=39.16 Aligned_cols=215 Identities=9% Similarity=0.083 Sum_probs=102.9
Q ss_pred CcHHHHHHHHHHHHhcCcccChh--HHHHhhHHHHHHhhccc-ChHHHHHHHHHHHHHHHhhc---hh---hHHhhHHHH
Q 015150 156 SSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIG---ID---LLSQSLLPA 226 (412)
Q Consensus 156 ~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~-~~~vr~~~~~~l~~i~~~~~---~~---~~~~~~~~~ 226 (412)
+|+.+-+++.+.+..+.+...+- ...+.+...+...++++ +|.--.....+++.+.+... ++ .+.+.++|.
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~ 121 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPP 121 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Confidence 34444444555444443332221 12244555555555554 45555566666666666543 22 355677888
Q ss_pred HHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHH---HHHHHHHHHHHHHhChhh----hhh
Q 015150 227 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR---DAAANNVKRLAEEFGPDW----AMQ 299 (412)
Q Consensus 227 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr---~~a~~~l~~l~~~~~~~~----~~~ 299 (412)
+...+..+-.+.--.+.+.++.+.+........+....++-.++...-|+-+ -+..+.|..+++.-+... ...
T Consensus 122 f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~ 201 (435)
T PF03378_consen 122 FQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLE 201 (435)
T ss_dssp HHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHH
Confidence 8877766544444445556666665554111111122222222333333311 223333444443332221 123
Q ss_pred hhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcC-CCCchHHHHHHHHHHHHhhhhch
Q 015150 300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ 372 (412)
Q Consensus 300 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~ 372 (412)
.++..+.+++.++... ..+.+.+..+...++.+ .|...++..++..++ .+.++.++..+..++.++-..|+
T Consensus 202 ~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~ 276 (435)
T PF03378_consen 202 PILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGP 276 (435)
T ss_dssp HHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCH
Confidence 4556666666665422 33667777777777765 466677777777765 44556666666666655554454
No 224
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=95.27 E-value=3.1 Score=40.26 Aligned_cols=367 Identities=14% Similarity=0.134 Sum_probs=193.4
Q ss_pred HHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhh-----hhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCc-
Q 015150 29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA-----HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT- 102 (412)
Q Consensus 29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-----~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~- 102 (412)
+|-...++.+.++.+...|+.-+..++.. ++..+. .=++.+..++.++..+|+..+|-+|.++...-..+..
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfg--d~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFG--DNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhh--hHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 34445566666666665555555555433 222222 2567788899999999999999999999864333111
Q ss_pred ----ccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHh--hCHHHHHHhhhhhHHHh-c------c--CC-----cHHHH
Q 015150 103 ----RSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVKEL-S------S--DS-----SQHVR 161 (412)
Q Consensus 103 ----~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~-~------~--d~-----~~~vr 161 (412)
...=+|.+.+++.. .|.+||+...-.|.++..+ +....+ ..-+..+... + . +. ...|-
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 12235666666653 5678999888888777665 211111 1111222111 0 0 11 12344
Q ss_pred HHHHHHHHhcCcccCh--h------HHHHhhHHHHHHhhcc---cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHH
Q 015150 162 SALATVIMGMAPILGK--D------ATIEQLLPIFLSLLKD---EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 230 (412)
Q Consensus 162 ~~~~~~l~~l~~~~~~--~------~~~~~l~~~l~~~l~d---~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~ 230 (412)
..+..+|.++...-.. + ...+.|+-.+...+.. ++..|. ++...+-.+..-+..+ +.+.....
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VE-NcvCilRNLSYrl~~E-----vp~~~~~~ 465 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVE-NCVCILRNLSYRLEAE-----VPPKYRQV 465 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHH-HHHHHHhhcCchhhhh-----cCHhhhhH
Confidence 4455556555432100 0 0112333333333322 122232 2222222222111111 11111111
Q ss_pred hcC-------CCchHHHHHHHHhhHHHhh---------h--------Chh-hHHHHHHHHHHHHhcC-chhHHHHHHHHH
Q 015150 231 AED-------RHWRVRLAIIEYIPLLASQ---------L--------GVG-FFDDKLGALCMQWLKD-KVYSIRDAAANN 284 (412)
Q Consensus 231 ~~d-------~~~~vr~~~~~~l~~l~~~---------~--------~~~-~~~~~l~~~l~~~l~d-~~~~vr~~a~~~ 284 (412)
... ..+. ....+++.-.+. + |.+ .+.+.++..+..++.. .+..+.++++.+
T Consensus 466 ~~~~~~~~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGa 542 (717)
T KOG1048|consen 466 LANIARLPGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGA 542 (717)
T ss_pred hhcccccccCCCcc---cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhh
Confidence 110 0011 111222222211 0 111 2346677776666653 456788888888
Q ss_pred HHHHHHHhCh-------hh-hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh-HHHHhhHHHHHhhcCCCCc--
Q 015150 285 VKRLAEEFGP-------DW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDRVP-- 353 (412)
Q Consensus 285 l~~l~~~~~~-------~~-~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~~l~d~~~-- 353 (412)
|..+.-..+. .. ..+..+|.+.+++...+..+-.+++.++..++-..... -+..+.+|.|+..|.+..+
T Consensus 543 LQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~ 622 (717)
T KOG1048|consen 543 LQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPST 622 (717)
T ss_pred HhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCc
Confidence 8776643221 11 24567899999999999899999999999997544433 3556889999999887654
Q ss_pred ----hHHHHHHHHHHHHh-hhhch--HHHHhhHHHHHHhhcCCC-CccHHHHHHHHHHHhHH
Q 015150 354 ----NIKFNVAKVLQSLI-PIVDQ--SVVEKSIRPCLVELSEDP-DVDVRFFATQALQSKDQ 407 (412)
Q Consensus 354 ----~vR~~~~~~l~~l~-~~~~~--~~~~~~i~~~l~~l~~d~-~~~vr~~a~~al~~~~~ 407 (412)
.+-..++.++.++. +.+.. +.+...-++.|..+.... ++++-+.|...+..+.+
T Consensus 623 ~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 623 SLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred CchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 45567777777776 22222 234445566666544333 33666677777766654
No 225
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.20 E-value=0.13 Score=39.89 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=75.0
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---h-hhhhhhHHHHHhhcc
Q 015150 1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---Q-DCVAHILPVIVNFSQ 76 (412)
Q Consensus 1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~-~~~~~l~~~l~~l~~ 76 (412)
++.+|..+.-++..+... .++.+.+.+..++.....+....-...+..++..+.+..++ + ...+.+.+.+..+..
T Consensus 18 ~~~~r~~a~v~l~k~l~~-~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 18 PEEVRSHALVILSKLLDA-AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp SCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 467888888888887533 33455666667776666555444444555666665554332 1 123346666666655
Q ss_pred --CCChHHHHHHHHHHHHHHHHhC-CCCcccchHHHHHHhcC-CChHH-HHHHHHHHHHH
Q 015150 77 --DKSWRVRYMVANQLYELCEAVG-PEPTRSDVVPAYVRLLR-DNEAE-VRIAAAGKVTK 131 (412)
Q Consensus 77 --d~~~~vR~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~-d~~~~-vr~~a~~~l~~ 131 (412)
.++..+...+++.|..-+-.-. ......+.++.+.+.++ ++++. +|..|+-.|.+
T Consensus 97 ~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 5667777777777755432110 11233566778888874 55555 77777766654
No 226
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.08 E-value=1.3 Score=34.78 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=68.5
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHH---HHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHhChh-
Q 015150 221 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPD- 295 (412)
Q Consensus 221 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~- 295 (412)
+.+...+..++.++++.-|-.++..++.+++..|.+.+. ..++..+++.++.+ ...+++.++.++..+.......
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 556666777778877888877777777777776655542 34555566666553 3457888888888887765421
Q ss_pred h-h-------hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch
Q 015150 296 W-A-------MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS 333 (412)
Q Consensus 296 ~-~-------~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 333 (412)
. . ...+++.+.++.++ ......++.++..+....+.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 1 1 12344445555554 34556777777776654443
No 227
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.98 E-value=1.5 Score=35.18 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=53.0
Q ss_pred hhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh
Q 015150 65 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 136 (412)
Q Consensus 65 ~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 136 (412)
+..++-+++++.+++..+|..+++.+..+.+..-. .+.+.+|.+..+..|+++.+|..|...+..+.+..
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLV--NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 44566677788888888898888888877763211 23567888888888999999999988888876644
No 228
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=1.6 Score=44.89 Aligned_cols=209 Identities=18% Similarity=0.240 Sum_probs=121.3
Q ss_pred hhHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHhccCC---chHHHHHHHHhHHHHhhccC---chhhhhhhHHHHHhh
Q 015150 3 MVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDD---QDSVRLLAVEGCGALGKLLE---PQDCVAHILPVIVNF 74 (412)
Q Consensus 3 ~vR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~~~---~~~~r~~a~~~l~~i~~~~~---~~~~~~~l~~~l~~l 74 (412)
+||....+++-.+....+.. +-|..+...+....... .-.+-+.+..++..+...+- |......++..+..+
T Consensus 857 evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~f 936 (1610)
T KOG1848|consen 857 EVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVF 936 (1610)
T ss_pred eeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHH
Confidence 46777777777777765532 12666777766555433 33344455566666554431 234555566666655
Q ss_pred cc-CCChHHHHHHHHHHHHHHHHhCC-----------------------------CCcccchHHHHHHhcCCChHHHHHH
Q 015150 75 SQ-DKSWRVRYMVANQLYELCEAVGP-----------------------------EPTRSDVVPAYVRLLRDNEAEVRIA 124 (412)
Q Consensus 75 ~~-d~~~~vR~~~~~~l~~l~~~~~~-----------------------------~~~~~~l~~~l~~~l~d~~~~vr~~ 124 (412)
+. ..|..+-..++-.+=.+.+.+.. +..|-.++..+.++++|.-++||..
T Consensus 937 s~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRng 1016 (1610)
T KOG1848|consen 937 SRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVRNG 1016 (1610)
T ss_pred HhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHhhh
Confidence 43 34555555555444333332210 1112246667788999999999999
Q ss_pred HHHHHHHHHHh----hCHHHHHHhhhhhHHHhccC------Cc---HHH----HHHHHHHHHhcCcccChhH--------
Q 015150 125 AAGKVTKICRI----LNPELAIQHILPCVKELSSD------SS---QHV----RSALATVIMGMAPILGKDA-------- 179 (412)
Q Consensus 125 a~~~l~~l~~~----~~~~~~~~~~~~~l~~~~~d------~~---~~v----r~~~~~~l~~l~~~~~~~~-------- 179 (412)
|++.+.++... +++.-|..-++..+..++.. ++ .++ -...+-.++.++..+....
T Consensus 1017 Avqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~llnln~ 1096 (1610)
T KOG1848|consen 1017 AVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKLLLNLNG 1096 (1610)
T ss_pred HHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 99999887654 34444444444444444320 11 111 1234555566655443321
Q ss_pred ---HHHhhHHHHHHhhcccChHHHHHHHHHHHHHH
Q 015150 180 ---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 211 (412)
Q Consensus 180 ---~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~ 211 (412)
.-+.++.++..+..|.++++..++++++..+.
T Consensus 1097 f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1097 FLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 12567778888888999999999999988764
No 229
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.89 E-value=0.89 Score=40.45 Aligned_cols=133 Identities=14% Similarity=0.277 Sum_probs=81.4
Q ss_pred HHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhccc-------ChHHHHHHHHHHHHHHHh--hchhhH
Q 015150 149 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE-------FPDVRLNIISKLDQVNQV--IGIDLL 219 (412)
Q Consensus 149 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-------~~~vr~~~~~~l~~i~~~--~~~~~~ 219 (412)
+.+.+.+.+...|..+...+.. +.....|+|+|..++.+. +-..-...++....+... +.-+.+
T Consensus 183 It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Y 255 (343)
T cd08050 183 ITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPY 255 (343)
T ss_pred HHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHh
Confidence 3334445667777777665432 222458889998887653 122222233333333322 223455
Q ss_pred HhhHHHHHHHHh----------cCCCchHHHHHHHHhhHHHhhhChh--hHHHHHHHHHHHHhcCchhH--HHHHHHHHH
Q 015150 220 SQSLLPAIVELA----------EDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYS--IRDAAANNV 285 (412)
Q Consensus 220 ~~~~~~~l~~~~----------~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~--vr~~a~~~l 285 (412)
...++|.++.++ .+.+|.+|..++..+..++..++.. .+.+.+...+.+.+.|+... ....|+..|
T Consensus 256 lh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL 335 (343)
T cd08050 256 LHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGL 335 (343)
T ss_pred HHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHH
Confidence 677888877654 3567999999999999999998764 34566666677766665433 366666666
Q ss_pred HHH
Q 015150 286 KRL 288 (412)
Q Consensus 286 ~~l 288 (412)
..+
T Consensus 336 ~~l 338 (343)
T cd08050 336 SAL 338 (343)
T ss_pred HHh
Confidence 543
No 230
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.84 E-value=2.6 Score=37.13 Aligned_cols=172 Identities=17% Similarity=0.163 Sum_probs=94.0
Q ss_pred HHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHH--HHHHHHHHHHhcC----chhHHHHHHHHHHHHHHHHhCh--hh
Q 015150 225 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGP--DW 296 (412)
Q Consensus 225 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~--~~ 296 (412)
..+.++++.+++.++..++..+..+....+..... ...++.+++++.+ ++.+++..++.+++.++..-.. .+
T Consensus 108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f 187 (312)
T PF03224_consen 108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVF 187 (312)
T ss_dssp HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHH
Confidence 33444777778888888888888887665443222 2455666665553 5566778888888888753221 12
Q ss_pred hhhhhHHHHHhhh-----cC--CchHHHHHHHHHHHHhccc--cchhHHHHhhHHHHHhhcCCC-CchHHHHHHHHHHHH
Q 015150 297 AMQHIVPQVLEMI-----NN--PHYLYRMTILQAISLLAPV--MGSEITCSQLLPVVINASKDR-VPNIKFNVAKVLQSL 366 (412)
Q Consensus 297 ~~~~~l~~l~~~~-----~~--~~~~~r~~~~~~l~~l~~~--~~~~~~~~~il~~l~~~l~d~-~~~vR~~~~~~l~~l 366 (412)
.....++.+...+ .+ .+.++...++.++-.++-. .-.+.....++|.+.+.+++. ..+|-+.++.++.++
T Consensus 188 ~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl 267 (312)
T PF03224_consen 188 WKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNL 267 (312)
T ss_dssp HTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHT
T ss_pred HhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 2345566666666 22 2355666666666655421 111223345888888887654 345555667777777
Q ss_pred hhhhch----HHHHhhHHHHHHhhcCC--CCccHHH
Q 015150 367 IPIVDQ----SVVEKSIRPCLVELSED--PDVDVRF 396 (412)
Q Consensus 367 ~~~~~~----~~~~~~i~~~l~~l~~d--~~~~vr~ 396 (412)
...-.. ......+++.+..+... .|+|+..
T Consensus 268 ~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 268 LSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp TSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred HhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence 654432 23445677777776533 4445443
No 231
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.80 E-value=2.5 Score=36.80 Aligned_cols=125 Identities=11% Similarity=0.143 Sum_probs=63.9
Q ss_pred hHHHHHHHHhhHHHhhhChhhHHHHH---HHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhh---hhhHHHHHhhhc
Q 015150 237 RVRLAIIEYIPLLASQLGVGFFDDKL---GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM---QHIVPQVLEMIN 310 (412)
Q Consensus 237 ~vr~~~~~~l~~l~~~~~~~~~~~~l---~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~l~~l~~~~~ 310 (412)
.|...+++....+.+.+|.+.+...+ .|-++.++......||-..+..+....-.+|. .+. ..++..++..+.
T Consensus 70 GVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLe 148 (307)
T PF04118_consen 70 GVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLE 148 (307)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccc
Confidence 45555555555666666555554432 34455555555555555555555555544444 221 223333444445
Q ss_pred CCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150 311 NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 367 (412)
Q Consensus 311 ~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 367 (412)
|++...-..+...+..+...++.+.|+..++-.+. .+|.+|..++..+..-.
T Consensus 149 de~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l 200 (307)
T PF04118_consen 149 DEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRL 200 (307)
T ss_pred cCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhC
Confidence 55555555556666666555555544444444433 34455555555544433
No 232
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=94.58 E-value=0.045 Score=31.37 Aligned_cols=25 Identities=44% Similarity=0.466 Sum_probs=13.8
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHH
Q 015150 104 SDVVPAYVRLLRDNEAEVRIAAAGK 128 (412)
Q Consensus 104 ~~l~~~l~~~l~d~~~~vr~~a~~~ 128 (412)
+.+...+...+.|+++.||.+|++.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3455555555566666666655543
No 233
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.54 E-value=0.59 Score=36.28 Aligned_cols=126 Identities=16% Similarity=0.133 Sum_probs=70.3
Q ss_pred CChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc---ChhHH-HHhhHHHHHHh
Q 015150 116 DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL---GKDAT-IEQLLPIFLSL 191 (412)
Q Consensus 116 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~~~~~-~~~l~~~l~~~ 191 (412)
...+++|..+.-++.++.+ ..++.+.+.+-.++...+.+.+..-...++.++..+.+.. |...+ .+.+.+.+..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~-~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLD-AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 3456789999888888753 2334455666677766665444334444555555554332 22221 24566666666
Q ss_pred hc--ccChHHHHHHHHHHHHHHHhhc-hhhHHhhHHHHHHHHhc-CCCch-HHHHH
Q 015150 192 LK--DEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAE-DRHWR-VRLAI 242 (412)
Q Consensus 192 l~--d~~~~vr~~~~~~l~~i~~~~~-~~~~~~~~~~~l~~~~~-d~~~~-vr~~~ 242 (412)
+. .++..+...+++.+..-+..-. ...+.++.++.+.+..+ +++.. +|..+
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A 150 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLA 150 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHH
Confidence 66 5567777777777766543322 23344566777777774 33333 44433
No 234
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.45 E-value=1.9 Score=39.87 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=83.6
Q ss_pred HHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchH---H-HHHHHHhhHHHhhh------Ch
Q 015150 186 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV---R-LAIIEYIPLLASQL------GV 255 (412)
Q Consensus 186 ~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~v---r-~~~~~~l~~l~~~~------~~ 255 (412)
.-+.+.+...++..|..|++.|..= -| .+.++|.+..++.+.-..- + ...+..+..+...+ --
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~TD---sG----L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~l 282 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLETD---SG----LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFL 282 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhccC---cc----HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccch
Confidence 3344455556777887776665432 22 2556777776655431110 1 11222233333332 12
Q ss_pred hhHHHHHHHHHHHHh----------cCchhHHHHHHHHHHHHHHHHhChhh--hhhhhHHHHHhhhcCCc--hHHHHHHH
Q 015150 256 GFFDDKLGALCMQWL----------KDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPH--YLYRMTIL 321 (412)
Q Consensus 256 ~~~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~~~~~~--~~~r~~~~ 321 (412)
+.+..+++|-++.++ .|..|.+|.-|+..+..+++.++..+ +...++..+.+.+.|+. +.....++
T Consensus 283 epYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai 362 (576)
T KOG2549|consen 283 EPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAI 362 (576)
T ss_pred hhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHH
Confidence 335567888877764 36789999999999999999987642 44567777777777763 77777787
Q ss_pred HHHHHhc
Q 015150 322 QAISLLA 328 (412)
Q Consensus 322 ~~l~~l~ 328 (412)
..|..+.
T Consensus 363 ~gL~~lg 369 (576)
T KOG2549|consen 363 AGLSELG 369 (576)
T ss_pred HHHHHhh
Confidence 7777764
No 235
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=0.68 Score=40.95 Aligned_cols=108 Identities=21% Similarity=0.243 Sum_probs=81.4
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHhChh--hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhh
Q 015150 266 CMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQL 340 (412)
Q Consensus 266 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~i 340 (412)
++..++.-+..||..|+..+..+....... .....+++.+.....|.+..+|.+..+.+..+......+ .+..-+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~ 142 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL 142 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence 345578888889999998888888763221 123457777778888888889999988888866555443 356677
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH
Q 015150 341 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 373 (412)
Q Consensus 341 l~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 373 (412)
+|.+....+...+.+|.-+++.+..+...+++.
T Consensus 143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 888888888888999999999998888877664
No 236
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=94.36 E-value=0.26 Score=34.17 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=46.2
Q ss_pred CchhHHHHHHHHHHHHHHHHhChh--hhhhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhccccchhHHHHhhHHHH
Q 015150 272 DKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSEITCSQLLPVV 344 (412)
Q Consensus 272 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l 344 (412)
|++|.+|+.|++.++.++..++.. .+...+...+.+.+.|++ ...+-.++..+..+ |.+.+..-++|.+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l 89 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNL 89 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCc
Confidence 567888888888888888888753 345667777777777654 55666777776665 4454444555543
No 237
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=94.32 E-value=3.8 Score=36.84 Aligned_cols=147 Identities=11% Similarity=0.112 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC------hhhhhhhhHHHHHh-hhcCCchHHHHHHHHHHHHhccccc
Q 015150 260 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG------PDWAMQHIVPQVLE-MINNPHYLYRMTILQAISLLAPVMG 332 (412)
Q Consensus 260 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~~l~~l~~-~~~~~~~~~r~~~~~~l~~l~~~~~ 332 (412)
++++..+..++.+.+.+....+.-+++.+++.=. ...+.+.++..+.+ .-.|.+-++.-+++.++..+.--.+
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 4577888888998899988888889998876321 12234445555554 3446677788899999998863222
Q ss_pred hh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc---hHH-HHhhHHHHHHhhcCCCCcc-HHHHHHHHHHHh
Q 015150 333 SE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---QSV-VEKSIRPCLVELSEDPDVD-VRFFATQALQSK 405 (412)
Q Consensus 333 ~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~---~~~-~~~~i~~~l~~l~~d~~~~-vr~~a~~al~~~ 405 (412)
.+ +...-+...++..++-..|.|....+.++.-+....+ .+- -....+..|..-.+.||-. |-....+.+..+
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~l 473 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGL 473 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHH
Confidence 22 2222344455555566666666555555443322111 000 0133444555545555554 444444444433
Q ss_pred H
Q 015150 406 D 406 (412)
Q Consensus 406 ~ 406 (412)
.
T Consensus 474 I 474 (604)
T KOG4500|consen 474 I 474 (604)
T ss_pred H
Confidence 3
No 238
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=8.4 Score=40.57 Aligned_cols=239 Identities=14% Similarity=0.154 Sum_probs=128.9
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHhCCCCccc---chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhh
Q 015150 71 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS---DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHI 145 (412)
Q Consensus 71 l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~ 145 (412)
+.+-+.-.|+..|.-+.+.++.+......+.... ...-.+.+++.|++..||......+..+...+... ++.+.+
T Consensus 46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~l 125 (1312)
T KOG0803|consen 46 IVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSL 125 (1312)
T ss_pred HHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 3344444567777777888877776655443322 23334556778888888888888888877766554 556667
Q ss_pred hhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHH----HHhhHHHHHHhh--------cc-----------cChHHHHH
Q 015150 146 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT----IEQLLPIFLSLL--------KD-----------EFPDVRLN 202 (412)
Q Consensus 146 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l--------~d-----------~~~~vr~~ 202 (412)
+|...-...|....|-.++-..+......-..... ...+.+...+.+ .| ....|-..
T Consensus 126 i~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~s 205 (1312)
T KOG0803|consen 126 IPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISS 205 (1312)
T ss_pred hhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHH
Confidence 77776666777777777776666554431111110 123333333321 11 01223334
Q ss_pred HHHHHHHHHHhhchhhHHhhH---------HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh---hHHHHHHHHHHHHh
Q 015150 203 IISKLDQVNQVIGIDLLSQSL---------LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWL 270 (412)
Q Consensus 203 ~~~~l~~i~~~~~~~~~~~~~---------~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l 270 (412)
++..+..+....|.+.-.... ...+-++.+++.+.+|.+..+.+..+...+..- .-...+.|.+....
T Consensus 206 sLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~ 285 (1312)
T KOG0803|consen 206 SLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSI 285 (1312)
T ss_pred HHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccc
Confidence 445555555444432211111 123445678899999999988887777655332 12344666666655
Q ss_pred cCchhHHHHHHHHHHHHHHHHhChhhh------hhhhHHHHHhhhc
Q 015150 271 KDKVYSIRDAAANNVKRLAEEFGPDWA------MQHIVPQVLEMIN 310 (412)
Q Consensus 271 ~d~~~~vr~~a~~~l~~l~~~~~~~~~------~~~~l~~l~~~~~ 310 (412)
.+.+ -|--.....+......+...++ .+.++|.+.++.+
T Consensus 286 ~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 286 DSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred cccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 5554 3333333333333333332221 2345565555554
No 239
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=8.2 Score=40.21 Aligned_cols=245 Identities=16% Similarity=0.149 Sum_probs=110.6
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHhhCHHHHH--HhhhhhHHHhc---cCCcHHHHHHHHHHHHhcCcc----cChhHHH
Q 015150 111 VRLLRDNEAEVRIAAAGKVTKICRILNPELAI--QHILPCVKELS---SDSSQHVRSALATVIMGMAPI----LGKDATI 181 (412)
Q Consensus 111 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~~~l~~~~---~d~~~~vr~~~~~~l~~l~~~----~~~~~~~ 181 (412)
......+..+||....+++..+.+..|+.... ..++..+.... ......+-+.+..++.-+... ++.+++
T Consensus 848 v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci- 926 (1610)
T KOG1848|consen 848 VSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI- 926 (1610)
T ss_pred HHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH-
Confidence 34556778899999999999998887765321 22333333222 222344444455555444332 222222
Q ss_pred HhhHHHHHHhhc-ccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhH--HHhhhChhhH
Q 015150 182 EQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL--LASQLGVGFF 258 (412)
Q Consensus 182 ~~l~~~l~~~l~-d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~--l~~~~~~~~~ 258 (412)
..++..+....+ ..+-.+-..|+..+..+...+..... ...+|.+ .+..++-+.. =.+..-++.+
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~---------S~sed~~---~~~~~e~~~ss~~~~~~l~e~l 994 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMF---------STSEDSC---AYNSVEDLYSSMKSKEILPEVL 994 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhh---------ccchhhh---hhcchhhhcccccchhhhhhHH
Confidence 234444444432 23445555555555444433321000 0000000 0000000000 0000111222
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh--------hhhhhHHHHHhhhc--CCc-------hHHHHHHH
Q 015150 259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--------AMQHIVPQVLEMIN--NPH-------YLYRMTIL 321 (412)
Q Consensus 259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--------~~~~~l~~l~~~~~--~~~-------~~~r~~~~ 321 (412)
.-.+...+.++..|+-.+||..|++++-++....|... +-..++|.+-..-. -.+ .+.-++.+
T Consensus 995 wi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ 1074 (1610)
T KOG1848|consen 995 WIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSC 1074 (1610)
T ss_pred HHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhh
Confidence 22244444555555555555555555555554443211 11122222220000 000 11224555
Q ss_pred HHHHHhccccchh-----------HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150 322 QAISLLAPVMGSE-----------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 322 ~~l~~l~~~~~~~-----------~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~ 368 (412)
..++.+++.++.. ..++.++.++.....|.++++..++++++..+..
T Consensus 1075 ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1075 LTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred hhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 6666665544432 2366677777777778888888888888776643
No 240
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=94.17 E-value=3.8 Score=36.26 Aligned_cols=243 Identities=16% Similarity=0.221 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhcc--------
Q 015150 5 RRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ-------- 76 (412)
Q Consensus 5 R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~-------- 76 (412)
++-+++.|+.+-+.++. ....-+..-..++.|++-.+|..|++.|..++.. +..+.+.+.+.++++
T Consensus 41 k~lasq~ip~~fk~fp~--la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLnk~sl~~Lf 114 (460)
T KOG2213|consen 41 KRLASQFIPRFFKHFPS--LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLNKASLTGLF 114 (460)
T ss_pred HHHHHHHHHHHHhhCch--hhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHHHHHHHHHH
Confidence 45566677777666652 2333444455568899999999999999988876 233333333333332
Q ss_pred ----CCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh--CHHHHHHhhh
Q 015150 77 ----DKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL--NPELAIQHIL 146 (412)
Q Consensus 77 ----d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~ 146 (412)
-.+..+|..+...|..=.-.++.+. ....++..+...+.|-..+-=...+..|+.+-... .++.-...+.
T Consensus 115 ~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa 194 (460)
T KOG2213|consen 115 GQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELA 194 (460)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHH
Confidence 1356677777666544332222222 22345666666666655543344444444432221 1111222233
Q ss_pred hhHHHh-----ccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhh----ccc-ChHHHHHHHHHHHHHHHhhch
Q 015150 147 PCVKEL-----SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL----KDE-FPDVRLNIISKLDQVNQVIGI 216 (412)
Q Consensus 147 ~~l~~~-----~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~-~~~vr~~~~~~l~~i~~~~~~ 216 (412)
.....+ +.-+++.+-....+|+..-++.+....-....+.++.+-+ -|. ..+.+...+++|..+..+...
T Consensus 195 ~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~tta 274 (460)
T KOG2213|consen 195 EEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTA 274 (460)
T ss_pred HHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchH
Confidence 332221 2234555555566666555555433222222333332211 121 256667788888888777643
Q ss_pred hhHHhhHHHHHHHHhcC------CCchHHHHHHHHhhHHHhhhC
Q 015150 217 DLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQLG 254 (412)
Q Consensus 217 ~~~~~~~~~~l~~~~~d------~~~~vr~~~~~~l~~l~~~~~ 254 (412)
+.. ...+|.+.+++.. ..+.....-++++-.+...+|
T Consensus 275 q~a-~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 275 QAA-RQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG 317 (460)
T ss_pred HHH-HHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence 332 3445555554332 233444444555554444444
No 241
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.17 E-value=1.8 Score=32.61 Aligned_cols=97 Identities=9% Similarity=0.098 Sum_probs=65.9
Q ss_pred hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHH
Q 015150 231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL 306 (412)
Q Consensus 231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~ 306 (412)
+.+++|..-..++..+.. ...|+ ...+..+.+.++++++.+...|+..|..++++.|..+. ...++..+.
T Consensus 14 l~~~dw~~ileicD~In~--~~~~~----k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~ 87 (139)
T cd03567 14 NREEDWEAIQAFCEQINK--EPEGP----QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI 87 (139)
T ss_pred CCCCCHHHHHHHHHHHHc--CCccH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence 446677766666666532 11122 23555667778899999999999999999999987653 345666677
Q ss_pred hhhcC------CchHHHHHHHHHHHHhccccch
Q 015150 307 EMINN------PHYLYRMTILQAISLLAPVMGS 333 (412)
Q Consensus 307 ~~~~~------~~~~~r~~~~~~l~~l~~~~~~ 333 (412)
+++.. .+..||...+..+......++.
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 66642 4567888888888777765543
No 242
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.15 E-value=0.4 Score=34.68 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=37.8
Q ss_pred HHHHHHHHh-cCCCchHHHHHHHHhhHHHhhhCh--hhH-HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 015150 223 LLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGV--GFF-DDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 290 (412)
Q Consensus 223 ~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~--~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 290 (412)
++..+.+++ ++.++.+-..++.=++.+++..+. ... .-.....++.++.+++++||..|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 344444444 223444444455555555555422 111 11245667888888899999999888887764
No 243
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=94.09 E-value=0.18 Score=34.92 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=52.4
Q ss_pred CCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCC--chHHHHHHHHHHHHhhhhchHHHHhhHHHHHH
Q 015150 311 NPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLV 384 (412)
Q Consensus 311 ~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~--~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~ 384 (412)
+++|.+|..+...++.++..++.. .....+...+.+.+.|+. ...+..|+..|..+ |++.....++|.+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l~ 90 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNLK 90 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCcC
Confidence 467999999999999999888864 367788889999988764 44566666666655 55555566666553
No 244
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.05 E-value=4 Score=36.02 Aligned_cols=136 Identities=10% Similarity=0.105 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHHHHhhh-hhhHHHHHHHH-HHhc---cCCchHHHH-HHHHhHHHHhhccCch------hhhhhhHHH
Q 015150 3 MVRRSAATNLGKFAATVEA-AHLKSEIMSIF-EELT---QDDQDSVRL-LAVEGCGALGKLLEPQ------DCVAHILPV 70 (412)
Q Consensus 3 ~vR~~a~~~l~~~~~~~~~-~~~~~~l~~~l-~~l~---~~~~~~~r~-~a~~~l~~i~~~~~~~------~~~~~l~~~ 70 (412)
.+|+...+.+..+....+. +.+.+.++|-+ ...+ ++..|..|. ..+.++..+...++.. .....++..
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3567777777777776542 23333333332 2233 223344444 2344444555444331 122223333
Q ss_pred HHhhcc-C--CChHHHHHHHHHHHHHHHHhCCC------CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH
Q 015150 71 IVNFSQ-D--KSWRVRYMVANQLYELCEAVGPE------PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 138 (412)
Q Consensus 71 l~~l~~-d--~~~~vR~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 138 (412)
.....+ | .-|..|....+.|..+...+... .....++..+...+++++.+|-..++.++..+.+.+..
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 333433 2 34899999999999988865321 12245777788888999999999999999988877655
No 245
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=94.02 E-value=2.7 Score=33.99 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=19.9
Q ss_pred HhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150 338 SQLLPVVINASKDRVPNIKFNVAKVLQSL 366 (412)
Q Consensus 338 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l 366 (412)
+.+-..+.+.+.|. +.+|..++++|..+
T Consensus 170 ~~~a~~L~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 170 PSFAKLLGNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHHHHHHhcC-cchHHHHHHHHHHH
Confidence 55666667777664 68888888887654
No 246
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.99 E-value=1.8 Score=32.92 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=61.5
Q ss_pred cCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHHh
Q 015150 232 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLE 307 (412)
Q Consensus 232 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~ 307 (412)
.+++|..-..++..+.. ...| ....+..+.+.++++++.+...|+..|..++++.|..+. ...++..+..
T Consensus 18 ~~~dw~~ileicD~In~--~~~~----~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~ 91 (142)
T cd03569 18 GEPDLASILEICDMIRS--KDVQ----PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKD 91 (142)
T ss_pred CccCHHHHHHHHHHHhC--CCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence 45667665555555432 1112 223555667777888888888888888888888877543 3456666666
Q ss_pred hhc-CCchHHHHHHHHHHHHhccccchh
Q 015150 308 MIN-NPHYLYRMTILQAISLLAPVMGSE 334 (412)
Q Consensus 308 ~~~-~~~~~~r~~~~~~l~~l~~~~~~~ 334 (412)
++. ..+..||..++..+...+..++.+
T Consensus 92 l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 92 LIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 655 345677777777777776655543
No 247
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=93.99 E-value=5.5 Score=37.45 Aligned_cols=145 Identities=10% Similarity=-0.020 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh----HHH
Q 015150 262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE----ITC 337 (412)
Q Consensus 262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~ 337 (412)
....+.....|-++.+|..+...++..+..++.-++.-..+...--.+.|.+..+|......+..++...+.. .+.
T Consensus 276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 4445666778888999999999999888766432222223333344567888899999999998887665543 345
Q ss_pred HhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150 338 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409 (412)
Q Consensus 338 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~ 409 (412)
+.+...++..+.-...-||..+++++..+... | .....-+-.+..++-|-.++-|....+++..+++..
T Consensus 356 eRFk~rILE~~r~D~d~VRi~sik~l~~lr~l-g--~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~ 424 (740)
T COG5537 356 ERFKDRILEFLRTDSDCVRICSIKSLCYLRIL-G--VLSSSEILIVSSCMLDIIPDSRENIVESVESICKID 424 (740)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHHh-c--ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 55555566655433334999999998877532 1 112233445555677888887777888888887754
No 248
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=93.98 E-value=3 Score=34.30 Aligned_cols=130 Identities=14% Similarity=0.174 Sum_probs=67.6
Q ss_pred HHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcC-CCchHHHHHHH-HhhHHHhhhChhhHHHHHH
Q 015150 186 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIE-YIPLLASQLGVGFFDDKLG 263 (412)
Q Consensus 186 ~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d-~~~~vr~~~~~-~l~~l~~~~~~~~~~~~l~ 263 (412)
.....+..+...+.|..++..+.......+ ...++.+...+.+ .+|.+.-.++. .++.+.... +...
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~~~ 122 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PEAL 122 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GGHH
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HHHH
Confidence 444455555556666555554444332211 1234444444443 45555444422 222222111 3356
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccc
Q 015150 264 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 330 (412)
Q Consensus 264 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 330 (412)
+.+.+.+++++..+|..++..+...... ...+.++..+...+.|+++.+|.+...+|..++..
T Consensus 123 ~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 123 ELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp HHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 6667777777777777776665444332 12345556666666777777777777777776644
No 249
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.83 E-value=2.4 Score=34.05 Aligned_cols=72 Identities=25% Similarity=0.194 Sum_probs=55.6
Q ss_pred HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC
Q 015150 220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 293 (412)
Q Consensus 220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 293 (412)
.+..++.+.+++.+++..+|..+++.+..+.+.- - .-..+.+|.++.+..|+++.+|..|...+..+.+..+
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG-L-vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQG-L-VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-C-CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 3567788888888889999999988888777642 1 1124478888888999999999999888888877653
No 250
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=93.79 E-value=0.13 Score=29.23 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=20.5
Q ss_pred hhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150 339 QLLPVVINASKDRVPNIKFNVAKVLQSLI 367 (412)
Q Consensus 339 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 367 (412)
..+|.|.++++++++.++..++++|++++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46677777777777777777777777664
No 251
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=93.78 E-value=0.15 Score=28.98 Aligned_cols=32 Identities=38% Similarity=0.333 Sum_probs=28.7
Q ss_pred HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 375 VEKSIRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 375 ~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
.....+|.|..++++++.+|+..|..+++.++
T Consensus 9 ~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 9 VEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 34578999999999999999999999999886
No 252
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.67 E-value=3.7 Score=38.08 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=28.6
Q ss_pred HHHHhhHHHHHhhc----------CCCCchHHHHHHHHHHHHhhhhchHH--HHhhHHHHHHhhcCCC
Q 015150 335 ITCSQLLPVVINAS----------KDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSEDP 390 (412)
Q Consensus 335 ~~~~~il~~l~~~l----------~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~i~~~l~~l~~d~ 390 (412)
.|...++|.++.++ .|..+.+|..+++.+..++..+++.+ ....+...+.+.+.|+
T Consensus 284 pYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 284 PYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDN 351 (576)
T ss_pred hHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 44555555555442 24455566666666666665555532 2334445555544443
No 253
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=2.6 Score=37.48 Aligned_cols=112 Identities=19% Similarity=0.246 Sum_probs=79.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHH--HHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhH---HH
Q 015150 107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---TI 181 (412)
Q Consensus 107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~ 181 (412)
+.-+...++..+..||+.|...+..+.+..+... ....+++.+..++.|.+..||......+..+....+++. ..
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 4445555678888999999988888777633331 233466667777888899999988888877665554443 22
Q ss_pred HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhh
Q 015150 182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 218 (412)
Q Consensus 182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~ 218 (412)
..++|++...+....+++|..+++.+..++..+++..
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 4556666677777788999999988888888776543
No 254
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.59 E-value=4.9 Score=35.56 Aligned_cols=186 Identities=9% Similarity=0.029 Sum_probs=104.0
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh-Chhh--H------H-HHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 015150 221 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGF--F------D-DKLGALCMQWLKDKVYSIRDAAANNVKRLAE 290 (412)
Q Consensus 221 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~--~------~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 290 (412)
..+++.+...+..-++..|..+...+..+...- |... . . +.++..++..-++++. --.+-.-+.++++
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~di--al~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDI--ALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTT--HHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccc--cchHHHHHHHHHh
Confidence 455566666666666666666666666655442 1110 0 1 2344444444443322 1111112222221
Q ss_pred Hh--ChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccc---hhH---HHHhhHHHHHhhcCCCCchHHHHHHHH
Q 015150 291 EF--GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEI---TCSQLLPVVINASKDRVPNIKFNVAKV 362 (412)
Q Consensus 291 ~~--~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~---~~~~il~~l~~~l~d~~~~vR~~~~~~ 362 (412)
.- ..-.+.+..+..+.+....++..+-..+...+..+..... .++ -.+.+...+.+++.+++.-+|..+++.
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 10 0001123345556677778888887777777777643322 222 244667788888999999999999999
Q ss_pred HHHHhhhhchHH------HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150 363 LQSLIPIVDQSV------VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 363 l~~l~~~~~~~~------~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 408 (412)
|+.+...-.... -...-+..+..+++|+.+.+|..|-+.+..++..
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 999964322211 1245677788889999999999999998887653
No 255
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=7.3 Score=37.20 Aligned_cols=249 Identities=10% Similarity=0.045 Sum_probs=125.6
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCc--HHHHHHHHHHHHhcCc-ccChhHH
Q 015150 104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS--QHVRSALATVIMGMAP-ILGKDAT 180 (412)
Q Consensus 104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~--~~vr~~~~~~l~~l~~-~~~~~~~ 180 (412)
+-.+-.+...+.+++..+|..++-.|+..-.....+.... .+...+.|.+ .+|...+.-+++.+.- ..+.+ .
T Consensus 451 dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~d-v 525 (878)
T KOG2005|consen 451 DPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLE----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNED-V 525 (878)
T ss_pred CHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHH----HHhHHhcCCCCchhHHHHHHhhcceeEEecCChH-H
Confidence 3466777888888999999999988876544444444433 3334444433 3465555556665432 12222 2
Q ss_pred HHhhHHHHHHhhc--ccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhH
Q 015150 181 IEQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 258 (412)
Q Consensus 181 ~~~l~~~l~~~l~--d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 258 (412)
...++..+.+--+ -+++..|.-++ +--.-++|.....+.+...+..+ ...+|..+ ..+...+...|....
T Consensus 526 ts~ilqtlmekse~El~d~~~RFL~L---GL~llflgkqe~~d~~~e~~~~i----~~~~~~~~-~~lv~~caYaGTGnv 597 (878)
T KOG2005|consen 526 TSSILQTLMEKSETELEDQWFRFLAL---GLALLFLGKQESVDAVVETIKAI----EGPIRKHE-SILVKSCAYAGTGNV 597 (878)
T ss_pred HHHHHHHHHHhhhhhhhchHHHHHHH---HHHHHHhcccchHHHHHHHHHHh----hhHHHHHH-HHHHHHhhccccCce
Confidence 2333333332211 12344554332 22222334332222333332221 12233322 222222222222111
Q ss_pred --HHHHHHHHHHHhcCchhH-HHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH
Q 015150 259 --DDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI 335 (412)
Q Consensus 259 --~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 335 (412)
.+. ..+.....+.... -.++-...|+--.-.+|.+.-.+..+-.+-..+.-.++.+|.+.=-+++-++...+.
T Consensus 598 l~Iq~--q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq-- 673 (878)
T KOG2005|consen 598 LKIQS--QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ-- 673 (878)
T ss_pred EEech--hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc--
Confidence 111 1111222221111 000002223322333555554556666667777777888999998898888754432
Q ss_pred HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc
Q 015150 336 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 371 (412)
Q Consensus 336 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 371 (412)
-.++..+.++..|...+|-..++-++|-+.....
T Consensus 674 --~~vlDtLsk~shd~D~eva~naIfamGLiGAGTn 707 (878)
T KOG2005|consen 674 --VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTN 707 (878)
T ss_pred --chHHHHHHHhccCcchHHHHHHHHHhccccCCcc
Confidence 3678888999999999999999999987765433
No 256
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=93.45 E-value=0.15 Score=29.19 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=16.9
Q ss_pred hhhhHHHHHhhccCCChHHHHHHHHH
Q 015150 64 VAHILPVIVNFSQDKSWRVRYMVANQ 89 (412)
Q Consensus 64 ~~~l~~~l~~l~~d~~~~vR~~~~~~ 89 (412)
.+.+...+...+.|+++.||.++++.
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 34566666666777777777776654
No 257
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=93.43 E-value=16 Score=41.10 Aligned_cols=253 Identities=15% Similarity=0.172 Sum_probs=139.6
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHhhCH--------HHHHHhhhhhHHHh-ccCCcHHHHHHHHHHHHhcCcccChhHH
Q 015150 110 YVRLLRDNEAEVRIAAAGKVTKICRILNP--------ELAIQHILPCVKEL-SSDSSQHVRSALATVIMGMAPILGKDAT 180 (412)
Q Consensus 110 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 180 (412)
+...+...++++|..+...+..+...... -...+.++..+..+ +.|.++.+|......+. ..+.....
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~la 562 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLA 562 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhc
Confidence 34456667789999997777666554322 11123333333333 46788888877766655 22211111
Q ss_pred HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhH----HHHHHHHhcCCCchHHHHHHHHhhHHHhhh--C
Q 015150 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL----LPAIVELAEDRHWRVRLAIIEYIPLLASQL--G 254 (412)
Q Consensus 181 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~----~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~ 254 (412)
....+-.....+.|..-.++..+...++.++..-. ....+.+ +....++--+...++.......+..+.... .
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 22334444555667667777777777776554321 1111122 122222222233344444444443333221 1
Q ss_pred hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC--hhhhhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhcccc
Q 015150 255 VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG--PDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVM 331 (412)
Q Consensus 255 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~ 331 (412)
...+...++-.+...+.|....+-.++..+++.++...| .....+..++.+.+.+.+.+ ...|.++..+++.+...-
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 111222233445555778888899999999999998877 33334567777777776644 667889999999887544
Q ss_pred ch----hHHHHhhHHHHHhhcCC-CCchHHHHHHHHHHHH
Q 015150 332 GS----EITCSQLLPVVINASKD-RVPNIKFNVAKVLQSL 366 (412)
Q Consensus 332 ~~----~~~~~~il~~l~~~l~d-~~~~vR~~~~~~l~~l 366 (412)
|- ..-.+.++..+...++. -...+|..+.+.++..
T Consensus 722 ~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~ 761 (2341)
T KOG0891|consen 722 GYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLL 761 (2341)
T ss_pred ceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh
Confidence 32 11244455555554443 3566788888887744
No 258
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=93.42 E-value=1.5 Score=32.91 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=62.0
Q ss_pred hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHH
Q 015150 231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL 306 (412)
Q Consensus 231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~ 306 (412)
..+++|..-..++..+..= ..-....+..+.+-++++++.+...|+..+..++++.|..+. ...++..+.
T Consensus 13 l~~~dw~~~l~icD~i~~~------~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~ 86 (133)
T smart00288 13 LLEEDWELILEICDLINST------PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELV 86 (133)
T ss_pred CCCcCHHHHHHHHHHHhCC------CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHH
Confidence 3456676555555444211 111233556677778889999999999999999998887653 345666666
Q ss_pred hhhcCCc--hHHHHHHHHHHHHhccccc
Q 015150 307 EMINNPH--YLYRMTILQAISLLAPVMG 332 (412)
Q Consensus 307 ~~~~~~~--~~~r~~~~~~l~~l~~~~~ 332 (412)
.++.++. ..+|..++..+......+.
T Consensus 87 ~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 87 KLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 6666543 2377777777777766554
No 259
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.36 E-value=2.7 Score=31.95 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=39.9
Q ss_pred hhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC----CCCcccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCH
Q 015150 65 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG----PEPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNP 138 (412)
Q Consensus 65 ~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~ 138 (412)
...+..+.+-++++++.+...++..|..++..+| .+....+++..+..++++ .+..||..+...+..++..+..
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3444445555555555665556665555555544 233334455555555555 5556666666666666555543
No 260
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.34 E-value=2 Score=32.23 Aligned_cols=96 Identities=16% Similarity=0.206 Sum_probs=57.4
Q ss_pred cCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHHh
Q 015150 232 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLE 307 (412)
Q Consensus 232 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~ 307 (412)
.+++|..-..++..+..- ..| ....+..+.+.++.+++.++..|+..+..++++.|..+. ...++..+..
T Consensus 14 ~~~D~~~il~icd~I~~~--~~~----~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 14 EEPDWALNLELCDLINLK--PNG----PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred CCccHHHHHHHHHHHhCC--CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence 446666555555544322 112 223555666777778888888888888888888776543 2244455555
Q ss_pred hhcC---CchHHHHHHHHHHHHhccccch
Q 015150 308 MINN---PHYLYRMTILQAISLLAPVMGS 333 (412)
Q Consensus 308 ~~~~---~~~~~r~~~~~~l~~l~~~~~~ 333 (412)
++.. .+..+|..+++.+......++.
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 5544 3456777777777666655543
No 261
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=93.19 E-value=0.52 Score=36.68 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 015150 78 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 135 (412)
Q Consensus 78 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 135 (412)
..-.+|++|.+++..+.+.+........+++.+...+.| +..||..+...+.+++..
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~ 95 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQL 95 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHh
Confidence 345566666666666666555555555556666666666 566666666666666443
No 262
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.10 E-value=2.9 Score=31.54 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=58.7
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH----HHHhhHHHHHhhcCC------CCchHHHHHHHHHHHHhh
Q 015150 299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKD------RVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~ 368 (412)
...+-.+.+.++++++.+..-++..+..+.+.+|..+ ....++..+.+++.+ ..+.||..++..+..+..
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4466677788889999999999999999999888763 345677777777753 568899999999999988
Q ss_pred hhch
Q 015150 369 IVDQ 372 (412)
Q Consensus 369 ~~~~ 372 (412)
.+..
T Consensus 117 ~f~~ 120 (139)
T cd03567 117 ELPH 120 (139)
T ss_pred Hhcc
Confidence 7764
No 263
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.09 E-value=6.6 Score=35.58 Aligned_cols=231 Identities=10% Similarity=0.059 Sum_probs=104.0
Q ss_pred ChHHHHHHHHHHHHHHHH------hCCCCcccchHHHHHHhcCCCh--HHHHHHHHHHHHHHHHhhCHH----HHHHhhh
Q 015150 79 SWRVRYMVANQLYELCEA------VGPEPTRSDVVPAYVRLLRDNE--AEVRIAAAGKVTKICRILNPE----LAIQHIL 146 (412)
Q Consensus 79 ~~~vR~~~~~~l~~l~~~------~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~----~~~~~~~ 146 (412)
+.++-..++++++.+... ++.+. ...++......+.+++ ..+-...+.++.. ..+++. .....++
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~-~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~ 135 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDF-ASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLL 135 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHH
Confidence 567777788888776532 22222 2234555555554433 2333333333321 112222 1222233
Q ss_pred hhHHHhcc-CCcHHHHHHHHHHHHhcCcccChhHHH--HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhH
Q 015150 147 PCVKELSS-DSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 223 (412)
Q Consensus 147 ~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~ 223 (412)
..+...-+ =++..+-.....++..+....+..... ..=+|.+...+-+....+|..+...+..+...++++......
T Consensus 136 ~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~ 215 (372)
T PF12231_consen 136 AALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS 215 (372)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 33332221 233333333444444444332221111 112233433344556778888777777776666654332222
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHH
Q 015150 224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 303 (412)
Q Consensus 224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~ 303 (412)
+....+....+. +.-....+.+..+...-+......+++..+..+|+++. +..-.+.+..+.
T Consensus 216 ~~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-----------------~~~w~~~n~wL~ 277 (372)
T PF12231_consen 216 VLEDLQRSLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-----------------LDSWEHLNEWLK 277 (372)
T ss_pred HHHHhccccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-----------------hhccHhHhHHHH
Confidence 222211111122 44444445555554443333344455555555554431 000111234445
Q ss_pred HHHhhhcCCchHHHHHHHHHHHHhccc
Q 015150 304 QVLEMINNPHYLYRMTILQAISLLAPV 330 (412)
Q Consensus 304 ~l~~~~~~~~~~~r~~~~~~l~~l~~~ 330 (412)
.....+++++..+|..|..+-..+...
T Consensus 278 v~e~cFn~~d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 278 VPEKCFNSSDPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 555566777777777777777666543
No 264
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=14 Score=39.12 Aligned_cols=198 Identities=18% Similarity=0.125 Sum_probs=119.0
Q ss_pred ccChHHHHHHHHHHHHHHHhhchhhHH---hhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh--hHHHHHHHHHHH
Q 015150 194 DEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQ 268 (412)
Q Consensus 194 d~~~~vr~~~~~~l~~i~~~~~~~~~~---~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~ 268 (412)
-.|+..+..|+..+..+......+... +...-.+.++..|.+.+||...-..+..+...+++. .+...++|...-
T Consensus 52 KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~ 131 (1312)
T KOG0803|consen 52 KRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLG 131 (1312)
T ss_pred ccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhh
Confidence 346788888888888887665544332 223334556778888899998888888887776553 233446666666
Q ss_pred HhcCchhHHHHHHHHHHHHHHHHhChh----hhhhhhHHHHHhhhc-------------------CCchHHHHHHHHHHH
Q 015150 269 WLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMIN-------------------NPHYLYRMTILQAIS 325 (412)
Q Consensus 269 ~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~-------------------~~~~~~r~~~~~~l~ 325 (412)
.-.|....|-.+|...+......-... .+...+.+.+.+.+. .+..++-..++.++.
T Consensus 132 ~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~ 211 (1312)
T KOG0803|consen 132 GQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSSLLLLL 211 (1312)
T ss_pred eecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHHHHHHH
Confidence 666777777777766665443311000 012233333333211 122455556666666
Q ss_pred HhccccchhH-HH---H-----hhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH---HHHhhHHHHHHhhcCCCC
Q 015150 326 LLAPVMGSEI-TC---S-----QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPD 391 (412)
Q Consensus 326 ~l~~~~~~~~-~~---~-----~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~ 391 (412)
.+....|.+. .. + .-...+.++++++.|.+|.+....+..+.+.+..- .....+.|.+.....+.+
T Consensus 212 ~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 212 KLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD 289 (1312)
T ss_pred HHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc
Confidence 6654444321 11 1 12335678899999999999999998887665443 233566777777666665
No 265
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=93.02 E-value=9.4 Score=37.14 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=66.0
Q ss_pred cCCchHHHHHHHHHHHHhccccchh-------H-HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH-HHHhhHH
Q 015150 310 NNPHYLYRMTILQAISLLAPVMGSE-------I-TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIR 380 (412)
Q Consensus 310 ~~~~~~~r~~~~~~l~~l~~~~~~~-------~-~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~i~ 380 (412)
...+..+-++++.+|..+.-..+.. . -.+..+|.+..++...+..|..+++.+|.+++...... ....+.+
T Consensus 529 ~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~ 608 (717)
T KOG1048|consen 529 LSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAI 608 (717)
T ss_pred HhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchH
Confidence 3445667788888888876433321 1 35678899999999999999999999999998765543 3445677
Q ss_pred HHHHhhcCCCC------ccHHHHHHHHHHHhH
Q 015150 381 PCLVELSEDPD------VDVRFFATQALQSKD 406 (412)
Q Consensus 381 ~~l~~l~~d~~------~~vr~~a~~al~~~~ 406 (412)
|.|...+-+.. .+.-..++..+-.+.
T Consensus 609 ~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 609 PDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred HHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 77777654443 355555555555554
No 266
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=92.95 E-value=7.1 Score=36.79 Aligned_cols=129 Identities=16% Similarity=0.090 Sum_probs=83.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhH----HHHhh
Q 015150 109 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA----TIEQL 184 (412)
Q Consensus 109 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l 184 (412)
.+.....|-++.+|..++..++.....++.-.+.-..+...--+++|.+..||..+...+..+....+... +.+.+
T Consensus 279 vfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRF 358 (740)
T COG5537 279 VFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERF 358 (740)
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 34556788899999999999998888776655544455666667899999999999999988876654332 22334
Q ss_pred HHHHHHhhc-ccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHH
Q 015150 185 LPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA 241 (412)
Q Consensus 185 ~~~l~~~l~-d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~ 241 (412)
...+.+++. |.+- ||..+++.+..+....- +...-+-.+..++-|..|+-|..
T Consensus 359 k~rILE~~r~D~d~-VRi~sik~l~~lr~lg~---L~~SeIlIvsscmlDi~pd~r~~ 412 (740)
T COG5537 359 KDRILEFLRTDSDC-VRICSIKSLCYLRILGV---LSSSEILIVSSCMLDIIPDSREN 412 (740)
T ss_pred HHHHHHHHhhccch-hhHHHHHHHHHHHHhcc---cchhHHHHHHHHHhcCCCcchHH
Confidence 444444443 5445 99999988887754311 11122333444455555553333
No 267
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.94 E-value=10 Score=37.47 Aligned_cols=362 Identities=10% Similarity=0.064 Sum_probs=182.3
Q ss_pred HHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCC-----hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc---
Q 015150 43 VRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL--- 114 (412)
Q Consensus 43 ~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~-----~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--- 114 (412)
.|+..-..+.....-++ +.....+...+-+...|.+ |..-.+++-.+..+++.++... ...+|.+++.+
T Consensus 440 YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asi 516 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASI 516 (982)
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhcccc
Confidence 34444444444444443 2234445555555655554 7788888889999999887655 23466666654
Q ss_pred --CCChHHHHHHHHHHHHHHHHhhCHHHH-HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh--HHHHhhHHHHH
Q 015150 115 --RDNEAEVRIAAAGKVTKICRILNPELA-IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFL 189 (412)
Q Consensus 115 --~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~ 189 (412)
+-.++..-..+...++..+..+++.+. .+..+|.+.+.+..+... ..+...+..++.....+ .+.+.++....
T Consensus 517 k~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s--~q~i~tl~tlC~~C~~~L~py~d~~~a~~~ 594 (982)
T KOG2022|consen 517 KLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKES--EQAISTLKTLCETCPESLDPYADQFSAVCY 594 (982)
T ss_pred ccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHH--HHHHHHHHHHHHhhhhhCchHHHHHHHHHH
Confidence 334778888999999999888876633 344567777666433322 23333455555433221 11223333333
Q ss_pred Hhhcc--cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHH-------hc--CCCchHHHHHHH---HhhHHHhhh-C
Q 015150 190 SLLKD--EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-------AE--DRHWRVRLAIIE---YIPLLASQL-G 254 (412)
Q Consensus 190 ~~l~d--~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~-------~~--d~~~~vr~~~~~---~l~~l~~~~-~ 254 (412)
..+.. -.+..|....+++|.+.+...++.+.++++..+..+ +. -+++.-+...+- ++..+...+ +
T Consensus 595 e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~ 674 (982)
T KOG2022|consen 595 EVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLIN 674 (982)
T ss_pred HHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 33332 246788899999999998888776645444333222 11 123333333333 333333322 1
Q ss_pred h---------------------hhHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHH----HHh
Q 015150 255 V---------------------GFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ----VLE 307 (412)
Q Consensus 255 ~---------------------~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~----l~~ 307 (412)
+ -.+...++|.+.+.++ -.+..|-++++.....-+...+.. +....+|. +..
T Consensus 675 ~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~r 753 (982)
T KOG2022|consen 675 KKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIVR 753 (982)
T ss_pred CCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHHH
Confidence 0 1123455666655443 234556666666555444444444 33333444 333
Q ss_pred hhcCCchHHHHHHHHHHHHhc--cccchh--HHHHhhHHHHHhhcC----CCCchHHHHHHHHHHHHhhhhc----h--H
Q 015150 308 MINNPHYLYRMTILQAISLLA--PVMGSE--ITCSQLLPVVINASK----DRVPNIKFNVAKVLQSLIPIVD----Q--S 373 (412)
Q Consensus 308 ~~~~~~~~~r~~~~~~l~~l~--~~~~~~--~~~~~il~~l~~~l~----d~~~~vR~~~~~~l~~l~~~~~----~--~ 373 (412)
+...+-...-.-...++-... +.+++. .-+...+...+..+. .+++..-......+..+.+... + .
T Consensus 754 ~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~ 833 (982)
T KOG2022|consen 754 FLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSML 833 (982)
T ss_pred hccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchH
Confidence 333222111110001111111 111110 011122222222222 2234555555555555544332 1 2
Q ss_pred HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150 374 VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 374 ~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 410 (412)
.++..+++.-..+++-|.+-.-.++.+.+..+....+
T Consensus 834 ~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~ 870 (982)
T KOG2022|consen 834 AFTSLILICAFILLNSPEPTTIRAASQFLTALATYAT 870 (982)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcc
Confidence 4667788777788888888766677777766655443
No 268
>PF05536 Neurochondrin: Neurochondrin
Probab=92.75 E-value=9.5 Score=36.50 Aligned_cols=223 Identities=12% Similarity=0.119 Sum_probs=126.4
Q ss_pred HHHhccCCchHHHHHHHHhHHHHhhccCchh-hhhh-----hHHHHHhhccC-------CChHHHHHHHHHHHHHHHHhC
Q 015150 32 FEELTQDDQDSVRLLAVEGCGALGKLLEPQD-CVAH-----ILPVIVNFSQD-------KSWRVRYMVANQLYELCEAVG 98 (412)
Q Consensus 32 l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~-~~~~-----l~~~l~~l~~d-------~~~~vR~~~~~~l~~l~~~~~ 98 (412)
...+++..+++-|-.++-.+.++.+.-+... .... =.+++..++.. +....+.-++..|+.++..-.
T Consensus 10 c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~ 89 (543)
T PF05536_consen 10 CLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPE 89 (543)
T ss_pred HHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChh
Confidence 3444555555666666666666665422110 0101 11223333332 234456666666666665111
Q ss_pred --CCCcccchHHHHHHhcCCChH-HHHHHHHHHHHHHHHhh-CHH-HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCc
Q 015150 99 --PEPTRSDVVPAYVRLLRDNEA-EVRIAAAGKVTKICRIL-NPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 173 (412)
Q Consensus 99 --~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~-~~~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 173 (412)
.+...-.-+|.+.+.+...+. .+-.-|.++|..++.+- |.+ ......++.+.+.+.+ .+.....+...+..+..
T Consensus 90 ~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls 168 (543)
T PF05536_consen 90 LASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLS 168 (543)
T ss_pred hhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHH
Confidence 111123468888888877666 88899999998887432 222 2233466666666655 55566777777766655
Q ss_pred ccChhHH------HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc--------hhhHHhhHHHHHHHHhcCC-CchH
Q 015150 174 ILGKDAT------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--------IDLLSQSLLPAIVELAEDR-HWRV 238 (412)
Q Consensus 174 ~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~--------~~~~~~~~~~~l~~~~~d~-~~~v 238 (412)
..+.+.. ...+++.+.+.........+...+..|+.+....+ ...+...+...+..++.+. .+.-
T Consensus 169 ~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~ 248 (543)
T PF05536_consen 169 RLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQ 248 (543)
T ss_pred hcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHH
Confidence 5543221 23455666665555556666667777777765542 1223456666666666654 4667
Q ss_pred HHHHHHHhhHHHhhhCh
Q 015150 239 RLAIIEYIPLLASQLGV 255 (412)
Q Consensus 239 r~~~~~~l~~l~~~~~~ 255 (412)
|..+......+.+..|.
T Consensus 249 R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 249 RDPALNLAASLLDLLGP 265 (543)
T ss_pred HHHHHHHHHHHHHHhCh
Confidence 77787777777777764
No 269
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=92.62 E-value=3.1 Score=31.56 Aligned_cols=75 Identities=11% Similarity=0.159 Sum_probs=56.2
Q ss_pred hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHH----HHhhHHHHHhhcCCCC-ch---HHHHHHHHHHHHhhh
Q 015150 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKDRV-PN---IKFNVAKVLQSLIPI 369 (412)
Q Consensus 298 ~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d~~-~~---vR~~~~~~l~~l~~~ 369 (412)
....+..+.+.++++++.+...++..+..+...+|..+. ...++..+.+++.++. .. ||..++..+..+...
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 356777788888888899999999999999888876532 3346777777665432 22 899999999999888
Q ss_pred hch
Q 015150 370 VDQ 372 (412)
Q Consensus 370 ~~~ 372 (412)
+..
T Consensus 120 f~~ 122 (140)
T PF00790_consen 120 FKS 122 (140)
T ss_dssp TTT
T ss_pred HCC
Confidence 754
No 270
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.53 E-value=4.7 Score=38.39 Aligned_cols=73 Identities=23% Similarity=0.211 Sum_probs=54.3
Q ss_pred ccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 330 VMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 330 ~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
.+|.+.-.+-.+..+-+.+.=.++.+|+++--+++-++.. .| .-.++..|.+.+.|.|.+|..+++-++|-+.
T Consensus 631 AMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvS-NP---q~~vlDtLsk~shd~D~eva~naIfamGLiG 703 (878)
T KOG2005|consen 631 AMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVS-NP---QVNVLDTLSKFSHDGDLEVAMNAIFAMGLIG 703 (878)
T ss_pred hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccC-CC---cchHHHHHHHhccCcchHHHHHHHHHhcccc
Confidence 3555533444556666677777889999988888877642 22 1358899999999999999999999998764
No 271
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=92.47 E-value=7.8 Score=34.80 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=50.7
Q ss_pred hhHHHHHhhcCCCC-chHHHHHHHHHHHHhhhhchH--HHH-hhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 339 QLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVDQS--VVE-KSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 339 ~il~~l~~~l~d~~-~~vR~~~~~~l~~l~~~~~~~--~~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
+++..|.++|+.++ |.+-..|+.=+++....+... ... -.--..+..+++.+|++||.+|..|+..+..
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 57777788877655 667777778888887765442 111 2355677888999999999999999988754
No 272
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.44 E-value=9.3 Score=35.66 Aligned_cols=294 Identities=12% Similarity=0.116 Sum_probs=154.4
Q ss_pred chHHHHHHhcCCCh---HHHHHHHHHHHHHHHH--hhCHHHHHHh--hhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh
Q 015150 105 DVVPAYVRLLRDNE---AEVRIAAAGKVTKICR--ILNPELAIQH--ILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177 (412)
Q Consensus 105 ~l~~~l~~~l~d~~---~~vr~~a~~~l~~l~~--~~~~~~~~~~--~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 177 (412)
.++..+..++++++ ..+-..++++++.... .++++.+.+. ++..+...+++. ..-..+.+++..+......
T Consensus 153 ~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~--~lhe~At~cic~ll~~~~~ 230 (559)
T KOG2081|consen 153 KVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDD--ELHEEATECICALLYCSLD 230 (559)
T ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccc--hhhHHHHHHHHHHHHHhhh
Confidence 45556666665432 5566777888877766 4555544332 445555555532 3334444444433222100
Q ss_pred --h--HHH------HhhHHHHHHh-hcccChHHHHHHHHHHHHHHHhhc------hhhHHhhHHHHHHHHhcCCCchHHH
Q 015150 178 --D--ATI------EQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIG------IDLLSQSLLPAIVELAEDRHWRVRL 240 (412)
Q Consensus 178 --~--~~~------~~l~~~l~~~-l~d~~~~vr~~~~~~l~~i~~~~~------~~~~~~~~~~~l~~~~~d~~~~vr~ 240 (412)
+ ... ..++|...++ ...++.+-+.+..+-+..+++... ++.+ -.++..+.-....+++++-.
T Consensus 231 ~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evie 309 (559)
T KOG2081|consen 231 RSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVIE 309 (559)
T ss_pred hhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhhh
Confidence 0 011 1222222222 223345544444444444433321 1111 12334445555667776666
Q ss_pred HHHHHhhHHHhhhCh---hhHHHHHHHHHHHHh-------------------cCchhHHHHHHHHHHHHHHHHhChhhhh
Q 015150 241 AIIEYIPLLASQLGV---GFFDDKLGALCMQWL-------------------KDKVYSIRDAAANNVKRLAEEFGPDWAM 298 (412)
Q Consensus 241 ~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-------------------~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 298 (412)
........+.+.... ......+.|.+.+++ .++-.+-|..+...+..+.-.+|.+.-.
T Consensus 310 ~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~l 389 (559)
T KOG2081|consen 310 ASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECL 389 (559)
T ss_pred hhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 555555555544321 111111223333222 1223457777888888888877765433
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCC--CCchHHHHHHHHHHHHhhhhchH-HH
Q 015150 299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQS-VV 375 (412)
Q Consensus 299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~~-~~ 375 (412)
+...-.+.+ +.++|..-++++..+..++...+.+ .+.++|.+++.+.. .-..+|.+++-.+|.+...+... ..
T Consensus 390 k~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~ 465 (559)
T KOG2081|consen 390 KQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE--ENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPEL 465 (559)
T ss_pred HHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--ccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHH
Confidence 333222222 4567999999999999999887765 45667766665432 22349999999999998877653 23
Q ss_pred HhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 376 EKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 376 ~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
..-++..+.+...+.. ....++.++..++.
T Consensus 466 le~v~~~~~~~~~~~~--~as~~a~~~~~i~~ 495 (559)
T KOG2081|consen 466 LEPVLRYIRQGLQLKR--LASAAALAFHRICS 495 (559)
T ss_pred HHHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence 3344444444443333 55666666665554
No 273
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=92.40 E-value=2.6 Score=31.64 Aligned_cols=95 Identities=16% Similarity=0.195 Sum_probs=56.5
Q ss_pred cCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHH----HhhHHHHHHh
Q 015150 310 NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV----EKSIRPCLVE 385 (412)
Q Consensus 310 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~----~~~i~~~l~~ 385 (412)
.+++|..-...+..+..- .-+ -...+..+.+.++++++++...++..+..+.+.-|.... ...++..+.+
T Consensus 14 ~~~D~~~il~icd~I~~~--~~~----~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 14 EEPDWALNLELCDLINLK--PNG----PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred CCccHHHHHHHHHHHhCC--CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence 446666555555554432 111 234556666667777778888888777777776665321 2233334555
Q ss_pred hcCC---CCccHHHHHHHHHHHhHHhhh
Q 015150 386 LSED---PDVDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 386 l~~d---~~~~vr~~a~~al~~~~~~~~ 410 (412)
+... .+..||..+.+.+..+...++
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5443 466788888888877777664
No 274
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.30 E-value=3.7 Score=31.20 Aligned_cols=75 Identities=5% Similarity=0.088 Sum_probs=59.5
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH----HHHhhHHHHHhhcC-CCCchHHHHHHHHHHHHhhhhchH
Q 015150 299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS 373 (412)
Q Consensus 299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~----~~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~~ 373 (412)
...+-.+.+.+++++..+...++..+..+.+.+|..+ ....++..+.+.+. ...+.||..++..+..++..+..+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 4566777888888889899999999999998888753 34467777777765 467889999999999999887654
No 275
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.07 E-value=8 Score=34.07 Aligned_cols=61 Identities=11% Similarity=0.171 Sum_probs=26.0
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHhCCCCcc--cchHHHHHHhcC----CChHHHHHHHHHHHHHHH
Q 015150 73 NFSQDKSWRVRYMVANQLYELCEAVGPEPTR--SDVVPAYVRLLR----DNEAEVRIAAAGKVTKIC 133 (412)
Q Consensus 73 ~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~----d~~~~vr~~a~~~l~~l~ 133 (412)
++++.+|+.++..++..++.+....+..... .+.++.+.+++. .++.++...|+.++..+.
T Consensus 112 ~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 112 KLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp HH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 3555556666666666666665543332221 133344433332 233444555555555554
No 276
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=91.93 E-value=9.3 Score=34.53 Aligned_cols=366 Identities=10% Similarity=0.054 Sum_probs=176.1
Q ss_pred chhHHHHHHHHHHHHHHh-hhh-----hhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchh-------hhhhhH
Q 015150 2 PMVRRSAATNLGKFAATV-EAA-----HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD-------CVAHIL 68 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~-~~~-----~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~-------~~~~l~ 68 (412)
..||.-..+|+.+..+.- ..+ .+...++..+.+..++++..+-...++++++++-.....- ....++
T Consensus 56 ~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivi 135 (604)
T KOG4500|consen 56 DTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVI 135 (604)
T ss_pred chhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehH
Confidence 356777778888777532 112 2335566777777788877888889999999986543210 112356
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHHhC-CCCc-----ccchHHHHHHhc--CCChHHHHHHHHHHHHHHHHhhCH--
Q 015150 69 PVIVNFSQDKSWRVRYMVANQLYELCEAVG-PEPT-----RSDVVPAYVRLL--RDNEAEVRIAAAGKVTKICRILNP-- 138 (412)
Q Consensus 69 ~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~-~~~~-----~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~-- 138 (412)
..+..++...++.--+...-..|-+..... .+.. ...+++.+...+ .=.+...-.-....+..+.+...+
T Consensus 136 d~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~ 215 (604)
T KOG4500|consen 136 DVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEML 215 (604)
T ss_pred hhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhh
Confidence 677777665554333333333444433322 1111 123445444332 222233333333333333332222
Q ss_pred --HHHHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcCccc------ChhHHHHhhHHHHHHhhcccCh-HHHHHHHHHHH
Q 015150 139 --ELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPIL------GKDATIEQLLPIFLSLLKDEFP-DVRLNIISKLD 208 (412)
Q Consensus 139 --~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~------~~~~~~~~l~~~l~~~l~d~~~-~vr~~~~~~l~ 208 (412)
.-+...+.-.+.+++ +..++..+.++.+.+...++.- .++...+.++..+.++=.+.+. +.+ +..+..+
T Consensus 216 ~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~-~l~k~~~ 294 (604)
T KOG4500|consen 216 YPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDML-NLFKRIA 294 (604)
T ss_pred hhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHH-HHHHhhh
Confidence 111112222233333 3345566777777776655421 1111222333333332112211 111 1111111
Q ss_pred HHH--HhhchhhH-----HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh--hhHHHHHHHHHHHHh-----cCch
Q 015150 209 QVN--QVIGIDLL-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWL-----KDKV 274 (412)
Q Consensus 209 ~i~--~~~~~~~~-----~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l-----~d~~ 274 (412)
.+. -..|.+.. -+.++..+...+.+.+........-+++.+++.=.. ......++..++.++ .|.+
T Consensus 295 el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgn 374 (604)
T KOG4500|consen 295 ELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGN 374 (604)
T ss_pred hHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 111 11233332 123566667777777878877777888888764322 222333444444443 4677
Q ss_pred hHHHHHHHHHHHHHHHHhChhh--hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch---h-HHHHhhHHHHHhhc
Q 015150 275 YSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---E-ITCSQLLPVVINAS 348 (412)
Q Consensus 275 ~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~-~~~~~il~~l~~~l 348 (412)
..++.+++.++..+.-...++. ....+...++..++-..+.+....+..+..+...... + --..+++..+..+.
T Consensus 375 V~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Ws 454 (604)
T KOG4500|consen 375 VERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWS 454 (604)
T ss_pred chhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhh
Confidence 7788888999888775443321 1122333444444444444444333333333221110 0 01345677778887
Q ss_pred CCCCch-HHHHHHHHHHHHhh
Q 015150 349 KDRVPN-IKFNVAKVLQSLIP 368 (412)
Q Consensus 349 ~d~~~~-vR~~~~~~l~~l~~ 368 (412)
+.++.. |--..-+.+..+.+
T Consensus 455 ks~D~aGv~gESnRll~~lIk 475 (604)
T KOG4500|consen 455 KSPDFAGVAGESNRLLLGLIK 475 (604)
T ss_pred hCCccchhhhhhhHHHHHHHH
Confidence 777655 55555555555543
No 277
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.19 E-value=10 Score=33.60 Aligned_cols=208 Identities=11% Similarity=0.133 Sum_probs=123.0
Q ss_pred HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh-h------H--H-hhHHHHHHHHhcCCCchHHHHHHHHhhHHH
Q 015150 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-L------L--S-QSLLPAIVELAEDRHWRVRLAIIEYIPLLA 250 (412)
Q Consensus 181 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~-~------~--~-~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~ 250 (412)
...+++.+...+..-+.+.|+.+...+..+.+.-..+ . + . +.++..+....++++-..-.+ ..+-..+
T Consensus 74 ~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g--~mlRec~ 151 (335)
T PF08569_consen 74 RSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCG--DMLRECI 151 (335)
T ss_dssp HHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHH--HHHHHHT
T ss_pred HhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHH--HHHHHHH
Confidence 4567777777777777888888887777776542111 1 1 1 345555666556554322221 1111111
Q ss_pred hhh--ChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---hhhh---hhhhHHHHHhhhcCCchHHHHHHHH
Q 015150 251 SQL--GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWA---MQHIVPQVLEMINNPHYLYRMTILQ 322 (412)
Q Consensus 251 ~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~---~~~~l~~l~~~~~~~~~~~r~~~~~ 322 (412)
+.- ....+.+...--+.+....++-+|-..|+.++..+..... .+++ .+.++.....++.++++-+|..++.
T Consensus 152 k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 152 KHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp TSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred hhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 100 0000011112225677888999999999999998775421 2222 2456677788899999999999999
Q ss_pred HHHHhccccchhH------HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc--hHH------HHhhHHHHHHhhcC
Q 015150 323 AISLLAPVMGSEI------TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSV------VEKSIRPCLVELSE 388 (412)
Q Consensus 323 ~l~~l~~~~~~~~------~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~--~~~------~~~~i~~~l~~l~~ 388 (412)
.|+.+..--.... -.+.-+..+..+++|++.++|..|..++..+...=. ++. -.+.++..+.....
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~ 311 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHT 311 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTT
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999863222211 134567788889999999999999999887764311 111 13567788888777
Q ss_pred CC
Q 015150 389 DP 390 (412)
Q Consensus 389 d~ 390 (412)
|+
T Consensus 312 ~~ 313 (335)
T PF08569_consen 312 DR 313 (335)
T ss_dssp T-
T ss_pred CC
Confidence 77
No 278
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=91.14 E-value=5.4 Score=30.26 Aligned_cols=98 Identities=13% Similarity=0.214 Sum_probs=62.8
Q ss_pred hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHH-
Q 015150 231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQ- 304 (412)
Q Consensus 231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~- 304 (412)
+.+++|..-..++..+.. ...|+ ...+-.+.+-+. ..++.|...|+..+..++++.|..+. ...++..
T Consensus 14 l~~~dw~~ileicD~In~--~~~~~----k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~ 87 (141)
T cd03565 14 LQSEDWGLNMEICDIINE--TEDGP----KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDV 87 (141)
T ss_pred CCCcCHHHHHHHHHHHhC--CCCcH----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHH
Confidence 345677766666666542 22232 234445566565 46788888889999999999987654 2456665
Q ss_pred HHhhhcC---CchHHHHHHHHHHHHhccccchh
Q 015150 305 VLEMINN---PHYLYRMTILQAISLLAPVMGSE 334 (412)
Q Consensus 305 l~~~~~~---~~~~~r~~~~~~l~~l~~~~~~~ 334 (412)
+.+.+.+ .+..|+...+..+...+..++.+
T Consensus 88 L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 88 LVKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred HHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 6666653 23567888888887777666543
No 279
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=91.13 E-value=0.95 Score=35.27 Aligned_cols=58 Identities=17% Similarity=0.076 Sum_probs=46.0
Q ss_pred CCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHH
Q 015150 38 DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 96 (412)
Q Consensus 38 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~ 96 (412)
|+--++|++|.+++..+............++..+...+.| +..+|.-+...+.+++..
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~ 95 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQL 95 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHh
Confidence 4445789999999999998877666667778888888888 889999999999888764
No 280
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=91.04 E-value=7.6 Score=31.80 Aligned_cols=133 Identities=16% Similarity=0.154 Sum_probs=73.7
Q ss_pred HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccC-CChHHHHHHHH-HHHHHHHHhCCCCccc
Q 015150 27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVAN-QLYELCEAVGPEPTRS 104 (412)
Q Consensus 27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~~~~-~l~~l~~~~~~~~~~~ 104 (412)
.+..++..+.+++.-+.|..|+..+........++. ++.+..++.+ .+|.+=-..+. .++.+... .+
T Consensus 46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-----~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~------~~ 114 (208)
T cd07064 46 ELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-----LPLLEELITTKSWWDTVDSLAKVVGGILLAD------YP 114 (208)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHcCCchHHHHHHHHHHHhHHHHhC------Ch
Confidence 344555556677766677777776666544443331 3333333333 34544333222 22332211 22
Q ss_pred chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150 105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 174 (412)
Q Consensus 105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 174 (412)
...+.+.+...|++.-+|.+|+.+...+.+.... ..+...+..++.|++..|+.++...|-+++..
T Consensus 115 ~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~----~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 115 EFEPVMDEWSTDENFWLRRTAILHQLKYKEKTDT----DLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccCH----HHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 3356677777777777777777665554443222 23445566667777778888877777777654
No 281
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=91.01 E-value=4.1 Score=29.87 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=47.7
Q ss_pred HHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHH-----HhhHHHHHHhhc--------CCCCccHHHHHHHHHH
Q 015150 337 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV-----EKSIRPCLVELS--------EDPDVDVRFFATQALQ 403 (412)
Q Consensus 337 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~i~~~l~~l~--------~d~~~~vr~~a~~al~ 403 (412)
...++..|.+-|+++.+.|+..+++.|..++..-.++.. ...++..+.... .++...||..|.+++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 557888888899999999999999999888765443311 122333333322 3455579999999887
Q ss_pred HhH
Q 015150 404 SKD 406 (412)
Q Consensus 404 ~~~ 406 (412)
.+.
T Consensus 116 ~if 118 (122)
T cd03572 116 AIF 118 (122)
T ss_pred HHh
Confidence 764
No 282
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.00 E-value=24 Score=37.56 Aligned_cols=76 Identities=9% Similarity=0.023 Sum_probs=43.4
Q ss_pred hhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHH
Q 015150 19 VEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 96 (412)
Q Consensus 19 ~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~ 96 (412)
+..++++..+...+.....|....-+ .-++++..+.+..++-. .+.+-+.+..++.++.-..+..+++.+..+...
T Consensus 1192 F~~skf~~~l~~~~sie~~D~~~Pa~-~F~rifK~l~r~ygd~~-~~~l~s~Le~l~~sk~~~~Q~laAEilaG~i~g 1267 (1710)
T KOG1851|consen 1192 FSDSKFLSRLINFLSIEKEDIFNPAD-TFCRIFKGLFRNYGDVK-LPALKSHLELLMASKKENEQLLAAEILAGLIHG 1267 (1710)
T ss_pred hhhhHHHHHHHHHHHhccccccChHH-HHHHHHHHHHHhCCchh-hhhhhHHHHHHHhcccchHHHHHHHHHHHHHhh
Confidence 34455555555554433344432222 44678888888876653 233444455566666666777778877766643
No 283
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=90.99 E-value=6.3 Score=33.61 Aligned_cols=130 Identities=16% Similarity=0.220 Sum_probs=67.6
Q ss_pred hcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCch---HHHHHHHHhhHHHhhhCh-----hhHHHHHH
Q 015150 192 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR---VRLAIIEYIPLLASQLGV-----GFFDDKLG 263 (412)
Q Consensus 192 l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~---vr~~~~~~l~~l~~~~~~-----~~~~~~l~ 263 (412)
++..+.+.|.+|+.+|.. ..| .+.++|.+..++.+.-.+ -.......+......+.. +.+..+++
T Consensus 207 ~dEs~~~~r~aAl~sLr~---dsG----lhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlm 279 (450)
T COG5095 207 LDESDEQTRDAALESLRN---DSG----LHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLM 279 (450)
T ss_pred HHHHHHHHHHHHHHHhcc---Ccc----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHH
Confidence 344456777776655532 112 245666666655542111 111111112222222221 23456677
Q ss_pred HHHHHHh-----c-C----chhHHHHHHHHHHHHHHHHhChhh--hhhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhc
Q 015150 264 ALCMQWL-----K-D----KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPH--YLYRMTILQAISLLA 328 (412)
Q Consensus 264 ~~l~~~l-----~-d----~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~ 328 (412)
|-++.++ . + +...+|.-|+..++.+++.++..+ +...+...+++.+-|.+ +...-.++..++.+.
T Consensus 280 PSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ 358 (450)
T COG5095 280 PSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS 358 (450)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence 8777664 1 2 233599999999999999887643 23344445555444433 445566777666654
No 284
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=90.84 E-value=15 Score=35.00 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=49.0
Q ss_pred HHHHHhhchhhHHhhHHHHHHHHh-cCCCchHHHHHHHHhhHHHhhhChhh----HHHHHHHHHHHHhcCchhHHHHHHH
Q 015150 208 DQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLKDKVYSIRDAAA 282 (412)
Q Consensus 208 ~~i~~~~~~~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~ 282 (412)
+.+.+.+.++.+ ..++-.+..++ .++.-.+|-+++..++.+++...++. ..+.+..++-.+|.|++|.+++.|+
T Consensus 466 ~~~~~~l~~~~i-~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~AL 544 (559)
T PF14868_consen 466 SFFIQLLDPQLI-EQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHAL 544 (559)
T ss_pred HHHHHhcChHHH-HHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHH
Confidence 333344444444 33444444444 33334477777777777776654332 2344555666677888888888888
Q ss_pred HHHHHHHHH
Q 015150 283 NNVKRLAEE 291 (412)
Q Consensus 283 ~~l~~l~~~ 291 (412)
.+++.+++.
T Consensus 545 eAF~~FAe~ 553 (559)
T PF14868_consen 545 EAFGQFAER 553 (559)
T ss_pred HHHHHHhcc
Confidence 888877764
No 285
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=90.83 E-value=9.4 Score=32.51 Aligned_cols=139 Identities=16% Similarity=0.137 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCch-----hHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHH-HHHHHHhccccchhH
Q 015150 262 LGALCMQWLKDKV-----YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTI-LQAISLLAPVMGSEI 335 (412)
Q Consensus 262 l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~-~~~l~~l~~~~~~~~ 335 (412)
.+|.++..+.+++ ..++ .++..++.+++..+...+.. ++..+....++-+... -+.+..+.+.+.++
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~La~-----il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~- 184 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPNLAR-----ILSSYAKGRFRDKDDFLSQVVSYLREAFFPD- 184 (262)
T ss_pred HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCccHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-
Confidence 4455555555554 3344 45567777776554433222 2222222222222222 22233333333322
Q ss_pred HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH-HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150 336 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 336 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 410 (412)
+...++-.+..++..+.+.+|..+++.|..+.+..+-. ....+++..+.+++..+ .-..|.+.+..+...-|
T Consensus 185 ~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~---~~~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 185 HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTD---LWMEALEVLDEIVTRSG 257 (262)
T ss_pred hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCc---cHHHHHHHHHHHHhhcc
Confidence 34456777888888888889999999998887765432 13344555555655333 33355556655555444
No 286
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.73 E-value=2.6 Score=31.64 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=58.9
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH----HHHhhHHHHHhhcCCCC--chHHHHHHHHHHHHhhhhch
Q 015150 299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQ 372 (412)
Q Consensus 299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~--~~vR~~~~~~l~~l~~~~~~ 372 (412)
...+..+.+.++++++.+...++..+..+...+|..+ ....++..+.+.+.++. +.||..++..+..++..+..
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 4567778888889999999999999999999888763 34457777777777653 33999999999999887754
No 287
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=90.66 E-value=11 Score=33.19 Aligned_cols=135 Identities=11% Similarity=0.152 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCcccC-hhHHHHhhHHHHHH-hhcc---cChHHHHH-HHHHHHHHHHhhch------hhHHhhHHHHH
Q 015150 160 VRSALATVIMGMAPILG-KDATIEQLLPIFLS-LLKD---EFPDVRLN-IISKLDQVNQVIGI------DLLSQSLLPAI 227 (412)
Q Consensus 160 vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~-~l~d---~~~~vr~~-~~~~l~~i~~~~~~------~~~~~~~~~~l 227 (412)
+|+...+.+........ .+...+.++|.+.+ .+.| ..|+.|.. +++.+..+...++. ..+.+.++...
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33444444444433332 22233445554443 3433 33344432 33444445444442 12234444444
Q ss_pred HHHhcC---CCchHHHHHHHHhhHHHhhhChh------hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh
Q 015150 228 VELAED---RHWRVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 294 (412)
Q Consensus 228 ~~~~~d---~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 294 (412)
..+.++ ..|..|....+.+..+.+..-.. .....++..+...+++++.+|...++..+..+++.+..
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 555544 45889999888888887764321 12234667777889999999999999999999987754
No 288
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=90.63 E-value=7.9 Score=31.29 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=48.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150 108 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 174 (412)
Q Consensus 108 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 174 (412)
+.+.....+++.-+|..++..+...... +.....++..+..+..|++..|+.++.+++..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 7788888888888888888888765554 223345677777778888888888888888887754
No 289
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=90.62 E-value=5.3 Score=29.32 Aligned_cols=71 Identities=14% Similarity=0.079 Sum_probs=40.3
Q ss_pred HhhHHHHHHHHhc-CCCchHHHHHHHHhhHHHhhhChh-hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 015150 220 SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 292 (412)
Q Consensus 220 ~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 292 (412)
...++|.+.+.++ ...++.|.++...++.++....-. .....++..+.+....... ...++.++..+.+..
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 3567788877777 667788888877777777655321 1122222222222222222 356777777777654
No 290
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=90.26 E-value=17 Score=34.66 Aligned_cols=152 Identities=12% Similarity=0.040 Sum_probs=85.5
Q ss_pred HHhhhhhHHHhccCCcH--HHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhh--------cccChHHHHHHHHHHHHHH
Q 015150 142 IQHILPCVKELSSDSSQ--HVRSALATVIMGMAPILGKDATIEQLLPIFLSLL--------KDEFPDVRLNIISKLDQVN 211 (412)
Q Consensus 142 ~~~~~~~l~~~~~d~~~--~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--------~d~~~~vr~~~~~~l~~i~ 211 (412)
...++.-+-..+.+++| .--...|+++|.+...+....-...++..+.+++ +|+..-|-...+...++--
T Consensus 479 e~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYp 558 (1053)
T COG5101 479 EKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYP 558 (1053)
T ss_pred HHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccch
Confidence 34455555555666554 5567889999999988876654555555554443 2322222222222222222
Q ss_pred Hhhch-hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh----------HHHHHHHHHHHHhcCchhHHHHH
Q 015150 212 QVIGI-DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----------FDDKLGALCMQWLKDKVYSIRDA 280 (412)
Q Consensus 212 ~~~~~-~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----------~~~~l~~~l~~~l~d~~~~vr~~ 280 (412)
+.+.. -.+.+.++.-+.+++.+....++..++..+-.+++.+...+ +...++.-+-+.-.|-.+.-...
T Consensus 559 RFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~ht 638 (1053)
T COG5101 559 RFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHT 638 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhH
Confidence 22221 12335556666777888889999999999988887664332 33333333333344555555555
Q ss_pred HHHHHHHHHHHhC
Q 015150 281 AANNVKRLAEEFG 293 (412)
Q Consensus 281 a~~~l~~l~~~~~ 293 (412)
..++++-++....
T Consensus 639 fYeAcg~vIse~p 651 (1053)
T COG5101 639 FYEACGMVISEVP 651 (1053)
T ss_pred HHHHHhHHHhccc
Confidence 6666666665443
No 291
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=90.16 E-value=4.7 Score=28.85 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=41.0
Q ss_pred CchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHH
Q 015150 312 PHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV 375 (412)
Q Consensus 312 ~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~ 375 (412)
.+...|..++..++.+.+..|.. .+.++++-.+...+..+ ++|..++++...+.+.++++..
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l 90 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDL 90 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHH
Confidence 44667778888888887733332 34555555555555544 7888888888888888777543
No 292
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=90.07 E-value=19 Score=34.83 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=50.4
Q ss_pred hHHHHhhHHHHHhhcCCC----CchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 334 EITCSQLLPVVINASKDR----VPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 334 ~~~~~~il~~l~~~l~d~----~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
+.|.++++..+-+++.|. ...+|..+++.+..+... + ....-+.+..+.-|+.+..|..+.+|.+.|.
T Consensus 686 e~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~k--D---~~~~~~y~iR~~~dki~~lR~l~yqa~eqI~ 757 (993)
T COG5234 686 EEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVK--D---SSGKKLYIIRQTFDKIDSLRGLAYQALEQIR 757 (993)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhc--c---ccCCchhHHHHhhcccHHHHhhhhhhhhhee
Confidence 467888999888887664 466899999999886431 1 1234456777788999999998888877653
No 293
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=89.97 E-value=19 Score=34.77 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=46.0
Q ss_pred hhhhhhhhHHHHHhhhcCCc----hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150 294 PDWAMQHIVPQVLEMINNPH----YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 366 (412)
Q Consensus 294 ~~~~~~~~l~~l~~~~~~~~----~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 366 (412)
.+.+++.++..+.+.+.|.. ..+|.-++..+..+.-. + ....-+.+...+-|+.+..|.-+.++...+
T Consensus 685 ie~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~k---D--~~~~~~y~iR~~~dki~~lR~l~yqa~eqI 756 (993)
T COG5234 685 IEEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVK---D--SSGKKLYIIRQTFDKIDSLRGLAYQALEQI 756 (993)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhc---c--ccCCchhHHHHhhcccHHHHhhhhhhhhhe
Confidence 35567888888888777642 55788888877775311 1 112234566777899999997777777665
No 294
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=89.79 E-value=5.7 Score=28.42 Aligned_cols=63 Identities=6% Similarity=0.045 Sum_probs=34.8
Q ss_pred cChHHHHHHHHHHHHHHHhhchh--hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHH
Q 015150 195 EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 259 (412)
Q Consensus 195 ~~~~vr~~~~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 259 (412)
.+..-|..++++++.+.+..+.. ...++++-.+...++.+ ..|..+++++..+.+.++.+.+.
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~ 91 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLG 91 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHH
Confidence 34566777777777777733321 11233333333333333 67777777777777777665443
No 295
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=89.33 E-value=7.9 Score=29.34 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHHhhhcCCc--hH--HHHHHHHHHHHhcccc
Q 015150 260 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLEMINNPH--YL--YRMTILQAISLLAPVM 331 (412)
Q Consensus 260 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~~~~~~--~~--~r~~~~~~l~~l~~~~ 331 (412)
...+..+.+.+.++++.+...|+..+..++++.|..+. ...++..+..++.++. .. ||..++..+......+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 44677788889999999999999999999999987654 3457777777666433 22 8999999999988777
Q ss_pred chh
Q 015150 332 GSE 334 (412)
Q Consensus 332 ~~~ 334 (412)
+..
T Consensus 121 ~~~ 123 (140)
T PF00790_consen 121 KSD 123 (140)
T ss_dssp TTS
T ss_pred CCC
Confidence 543
No 296
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=88.94 E-value=6.9 Score=28.39 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=20.5
Q ss_pred hhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh
Q 015150 300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE 334 (412)
Q Consensus 300 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 334 (412)
.++..+.+.+.+++|.+...++..+..+.+.+|..
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~ 71 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER 71 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH
Confidence 34555555555566666666666666666555544
No 297
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=88.76 E-value=0.55 Score=24.42 Aligned_cols=29 Identities=34% Similarity=0.374 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC
Q 015150 80 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD 116 (412)
Q Consensus 80 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 116 (412)
|.||..++.+|+.+.. ++.++.+.+.++|
T Consensus 1 ~~vR~~aa~aLg~~~~--------~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQLGD--------EEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHcCC--------HhHHHHHHHHhcC
Confidence 4577888888877642 4456666666665
No 298
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=88.09 E-value=14 Score=31.61 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=49.4
Q ss_pred hcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCC------chHHHHHHHHHHHHhcccc--chhHHHHhhH
Q 015150 270 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP------HYLYRMTILQAISLLAPVM--GSEITCSQLL 341 (412)
Q Consensus 270 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~------~~~~r~~~~~~l~~l~~~~--~~~~~~~~il 341 (412)
+...+...|.+|+.++.. +.-..+++|.+..++++. +-..-.+.+.....+...- =.++|...++
T Consensus 207 ~dEs~~~~r~aAl~sLr~-------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlm 279 (450)
T COG5095 207 LDESDEQTRDAALESLRN-------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLM 279 (450)
T ss_pred HHHHHHHHHHHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHH
Confidence 344455567777666532 222344555555555431 2223334444444443211 1234566677
Q ss_pred HHHHhhc------CCC----CchHHHHHHHHHHHHhhhhchH
Q 015150 342 PVVINAS------KDR----VPNIKFNVAKVLQSLIPIVDQS 373 (412)
Q Consensus 342 ~~l~~~l------~d~----~~~vR~~~~~~l~~l~~~~~~~ 373 (412)
|.++.++ +++ ...+|..|+..++..+..++..
T Consensus 280 PSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 280 PSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 7665553 122 2347878887777777776664
No 299
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=87.76 E-value=1.1 Score=23.27 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCC
Q 015150 354 NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSED 389 (412)
Q Consensus 354 ~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d 389 (412)
.||..++.+|+.+.. +...+.|...++|
T Consensus 2 ~vR~~aa~aLg~~~~--------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD--------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC--------HhHHHHHHHHhcC
Confidence 467777777776643 3445555555554
No 300
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=87.68 E-value=9.7 Score=28.38 Aligned_cols=136 Identities=12% Similarity=0.042 Sum_probs=82.0
Q ss_pred cCchhHHHHHHHHHHHHHHHHhCh-hhhh-hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch-hHH-HHhhHHHHHh
Q 015150 271 KDKVYSIRDAAANNVKRLAEEFGP-DWAM-QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-EIT-CSQLLPVVIN 346 (412)
Q Consensus 271 ~d~~~~vr~~a~~~l~~l~~~~~~-~~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~-~~~-~~~il~~l~~ 346 (412)
...+.+.++....+|+.++-.-.+ ..+. -.++..+...+..++....+-++..+..+|.--.. +++ ...=+|..+.
T Consensus 27 ~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~ 106 (173)
T KOG4646|consen 27 TTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIF 106 (173)
T ss_pred HhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEe
Confidence 345566667777777766521110 1111 24667777778888887777777776666532111 122 2223567778
Q ss_pred hcCCCCchHHHHHHHHHHHHhhh---hchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 347 ASKDRVPNIKFNVAKVLQSLIPI---VDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 347 ~l~d~~~~vR~~~~~~l~~l~~~---~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
.++|+...+--.++.++..+... ..++.....++..+.........+.|..+..+++..+
T Consensus 107 ~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 107 VLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred ecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 88898888888888887777532 1223344556666666555666777888887777654
No 301
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.56 E-value=18 Score=31.27 Aligned_cols=100 Identities=15% Similarity=0.235 Sum_probs=53.4
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH-HHHHHhhh
Q 015150 71 IVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-ELAIQHIL 146 (412)
Q Consensus 71 l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~ 146 (412)
+..++.+++|.||+.+++.+..+... +... .....++.+.++++|..+ -.-|+.++.+++....- +...+.++
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45566677777777777765544332 1111 113466777777777666 34455556555442211 12222244
Q ss_pred hhHHHhccCCcHHHHHHHHHHHHhcCc
Q 015150 147 PCVKELSSDSSQHVRSALATVIMGMAP 173 (412)
Q Consensus 147 ~~l~~~~~d~~~~vr~~~~~~l~~l~~ 173 (412)
..+...+.|+.+..-...|..+.+++.
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 445555566655555556666666553
No 302
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=87.51 E-value=5.8 Score=29.06 Aligned_cols=35 Identities=11% Similarity=0.332 Sum_probs=22.8
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH
Q 015150 104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 138 (412)
Q Consensus 104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 138 (412)
.++...+.+-+++.++.|+.-++..|..++...++
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~ 71 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNS 71 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCH
Confidence 45666666666777777777777777666665443
No 303
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=87.26 E-value=7 Score=31.56 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 015150 262 LGALCMQWLKDKVYSIRDAAANNVKRLA 289 (412)
Q Consensus 262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 289 (412)
++..+++...+.-..||..|..++..+.
T Consensus 8 ~~~~llrqa~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 8 IIGGLLRQAAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444555666777766666666
No 304
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=87.15 E-value=5.8 Score=35.11 Aligned_cols=99 Identities=10% Similarity=0.106 Sum_probs=64.9
Q ss_pred HhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHH
Q 015150 230 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQV 305 (412)
Q Consensus 230 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l 305 (412)
....++|.+-..+|..++.-. ..| ...+..+++.++..++.|...|+..++.+..++|..+. +..+...+
T Consensus 20 ~nT~enW~~IlDvCD~v~~~~-~~~-----kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el 93 (462)
T KOG2199|consen 20 KNTSENWSLILDVCDKVGSDP-DGG-----KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTEL 93 (462)
T ss_pred ccccccHHHHHHHHHhhcCCC-ccc-----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHH
Confidence 344566776665555543322 112 23566678888888888888888888888888886543 34566677
Q ss_pred HhhhcC-CchHHHHHHHHHHHHhccccchh
Q 015150 306 LEMINN-PHYLYRMTILQAISLLAPVMGSE 334 (412)
Q Consensus 306 ~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~ 334 (412)
..++.+ ...++++..-..+...++.|..+
T Consensus 94 ~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 94 RALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 777773 44677777777777777655554
No 305
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=87.10 E-value=29 Score=33.27 Aligned_cols=156 Identities=13% Similarity=0.099 Sum_probs=85.1
Q ss_pred chhhhhhhHHHHHhhccCC--ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc--------CCChHHHHHHHHHHH
Q 015150 60 PQDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL--------RDNEAEVRIAAAGKV 129 (412)
Q Consensus 60 ~~~~~~~l~~~l~~l~~d~--~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--------~d~~~~vr~~a~~~l 129 (412)
..+....+...+-..+.++ +|.--...|=++|++.-.++.+..+..++..+..++ +|....|-...+..+
T Consensus 475 v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvv 554 (1053)
T COG5101 475 VDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVV 554 (1053)
T ss_pred hhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeee
Confidence 3444555555555444443 455556667777877766665543333333333322 354455555445555
Q ss_pred HHHHHhhCHH-HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhH----------HHHhhHHHHHHhhcccChH
Q 015150 130 TKICRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA----------TIEQLLPIFLSLLKDEFPD 198 (412)
Q Consensus 130 ~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----------~~~~l~~~l~~~l~d~~~~ 198 (412)
|..-.++... .+...++.-+.+.+....+.|+.+||..+..+++..+.+. +...++.-+-+.-.|-.|.
T Consensus 555 GQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pq 634 (1053)
T COG5101 555 GQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQ 634 (1053)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChH
Confidence 5443333222 3444455555566667788999999999998876553332 2333333333333444555
Q ss_pred HHHHHHHHHHHHHHhhc
Q 015150 199 VRLNIISKLDQVNQVIG 215 (412)
Q Consensus 199 vr~~~~~~l~~i~~~~~ 215 (412)
-....-.+.+-+.+..+
T Consensus 635 Q~htfYeAcg~vIse~p 651 (1053)
T COG5101 635 QKHTFYEACGMVISEVP 651 (1053)
T ss_pred HHhHHHHHHhHHHhccc
Confidence 55556666666665544
No 306
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.04 E-value=36 Score=34.34 Aligned_cols=92 Identities=13% Similarity=0.175 Sum_probs=68.5
Q ss_pred HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh--hhH---HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh
Q 015150 220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 294 (412)
Q Consensus 220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 294 (412)
...++..-..++.+++-++|..++..+..-...+.. ..+ ..+.+|.++..+.++++-+...|++++..+....|.
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 345666667789999999999999988776655532 112 355678888889999999999999999998887663
Q ss_pred ---hhhhhhhHHHHHhhhcC
Q 015150 295 ---DWAMQHIVPQVLEMINN 311 (412)
Q Consensus 295 ---~~~~~~~l~~l~~~~~~ 311 (412)
.-+.+.++|.+..++.+
T Consensus 881 Fv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 22346788887776655
No 307
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.00 E-value=11 Score=39.96 Aligned_cols=75 Identities=17% Similarity=0.289 Sum_probs=43.3
Q ss_pred hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH
Q 015150 64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 138 (412)
Q Consensus 64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 138 (412)
++.+...++....+.+.+.|..++..+..+....+... ..++.+|++.++++|.+.+|...+...+..+-+.+|+
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence 34444444445555566666666666666666665544 2356666666666666666666666644444333333
No 308
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=86.63 E-value=15 Score=33.49 Aligned_cols=146 Identities=14% Similarity=0.076 Sum_probs=84.6
Q ss_pred HHHHHHHHhcCchhH--HHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchh---H
Q 015150 262 LGALCMQWLKDKVYS--IRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE---I 335 (412)
Q Consensus 262 l~~~l~~~l~d~~~~--vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~---~ 335 (412)
-+..++.++..++.+ ||..+.+.|.++...-..+.+...-+..++.+.+... .......+..++.+-+..... -
T Consensus 181 ~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~L 260 (832)
T KOG3678|consen 181 GLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRL 260 (832)
T ss_pred hHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 455667777766654 6999988888877554444433333444555444333 233334445555544322111 1
Q ss_pred HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH----HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 336 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 336 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
+....+..++-+++-..|.+-..++-+|+++...-+.+ .....+.+-|..+....|.-.|.+|+-|+..++.
T Consensus 261 vaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 261 VAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred HhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 22233444555566666777778888888887544432 2334455555556666677789999988887764
No 309
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=86.38 E-value=20 Score=30.60 Aligned_cols=166 Identities=13% Similarity=0.166 Sum_probs=91.2
Q ss_pred hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCccc----------chHHHHHHhcCCCh-----HHHHHHHHHH
Q 015150 64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS----------DVVPAYVRLLRDNE-----AEVRIAAAGK 128 (412)
Q Consensus 64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~----------~l~~~l~~~l~d~~-----~~vr~~a~~~ 128 (412)
.+.+.+++.+.+..++. -..+++.|..+.....+..... -.+|.+...+++++ +.++ .++..
T Consensus 62 f~Glq~Ll~KGL~Ss~t--~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~-~~A~~ 138 (262)
T PF14225_consen 62 FEGLQPLLLKGLRSSST--YELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECI-EIAEA 138 (262)
T ss_pred chhHHHHHhCccCCCCc--HHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHH-HHHHH
Confidence 34577888877765432 3445556666655432222111 25777777777766 4444 44477
Q ss_pred HHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHH
Q 015150 129 VTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 208 (412)
Q Consensus 129 l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~ 208 (412)
+..+++..+......-+-.+...-.++.+..++..+ ..+ .+.+.++. ...++-.+..++.+..+.+|..+++.|.
T Consensus 139 La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~-~~l---~~~f~P~~-~~~~l~~Ll~lL~n~~~w~~~~~L~iL~ 213 (262)
T PF14225_consen 139 LAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVV-SYL---REAFFPDH-EFQILTFLLGLLENGPPWLRRKTLQILK 213 (262)
T ss_pred HHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHH-HHH---HHHhCchh-HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 777775444332222222222223344444444433 222 22222111 2355667788888888889999998888
Q ss_pred HHHHhhchh-hHHhhHHHHHHHHhcCCCch
Q 015150 209 QVNQVIGID-LLSQSLLPAIVELAEDRHWR 237 (412)
Q Consensus 209 ~i~~~~~~~-~~~~~~~~~l~~~~~d~~~~ 237 (412)
.+.+..+.. ....+++..+.+++..+.|.
T Consensus 214 ~ll~~~d~~~~~~~dlispllrlL~t~~~~ 243 (262)
T PF14225_consen 214 VLLPHVDMRSPHGADLISPLLRLLQTDLWM 243 (262)
T ss_pred HHhccccCCCCcchHHHHHHHHHhCCccHH
Confidence 888776521 13455666777777776665
No 310
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=85.97 E-value=4.7 Score=27.51 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=38.4
Q ss_pred hhhhHHHHHhhh-cCCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHH
Q 015150 298 MQHIVPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364 (412)
Q Consensus 298 ~~~~l~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~ 364 (412)
.+.++..+...+ ..++..+|+..++++.++....|.. .-++.++..+.....|.+..+-..|.+++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 344555555543 3345677777777777776655543 235556666666666666666555555543
No 311
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=85.95 E-value=27 Score=31.73 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=49.5
Q ss_pred HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH------HHHhhHHHHHHhhcCCCCc----cHHHHHHHHHHH
Q 015150 335 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS------VVEKSIRPCLVELSEDPDV----DVRFFATQALQS 404 (412)
Q Consensus 335 ~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~------~~~~~i~~~l~~l~~d~~~----~vr~~a~~al~~ 404 (412)
.+.+..+.....+++++++.+|..|..+-..+.....++ ...-...|...++-..... ++|..+...+..
T Consensus 270 ~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ 349 (372)
T PF12231_consen 270 EHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCN 349 (372)
T ss_pred HhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhc
Confidence 356677777888899999999999999998887655442 1222445665555444444 677777777665
Q ss_pred hH
Q 015150 405 KD 406 (412)
Q Consensus 405 ~~ 406 (412)
+.
T Consensus 350 ll 351 (372)
T PF12231_consen 350 LL 351 (372)
T ss_pred hH
Confidence 43
No 312
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=85.38 E-value=36 Score=32.74 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=18.7
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRI 135 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 135 (412)
++..+..-++|. ..|..++.++.++.-.
T Consensus 223 ~i~~~~~klKdk--~~r~~~l~~l~RLlWv 250 (552)
T PF14222_consen 223 LIESLISKLKDK--ETRPVALECLSRLLWV 250 (552)
T ss_pred HHHHHHhhcCCh--hhhHHHHHHHHHHHHH
Confidence 334444446665 7899999999887643
No 313
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=85.29 E-value=1.4 Score=24.67 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=16.9
Q ss_pred hHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150 340 LLPVVINASKDRVPNIKFNVAKVLQSLI 367 (412)
Q Consensus 340 il~~l~~~l~d~~~~vR~~~~~~l~~l~ 367 (412)
.+|.+.+++.++++.++..++.+|..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4555556665556666666666666553
No 314
>COG2733 Predicted membrane protein [Function unknown]
Probab=84.94 E-value=28 Score=31.11 Aligned_cols=238 Identities=16% Similarity=0.147 Sum_probs=110.6
Q ss_pred chhHHHHHHHHHHHHHH--hhhhhhH-----HHHHHHHHHhccCCc--hHHHHHHHHhHHHHhhccCchhhhhhhHHHHH
Q 015150 2 PMVRRSAATNLGKFAAT--VEAAHLK-----SEIMSIFEELTQDDQ--DSVRLLAVEGCGALGKLLEPQDCVAHILPVIV 72 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~--~~~~~~~-----~~l~~~l~~l~~~~~--~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~ 72 (412)
|--+.+..+.++.+... +.++.+. ..+-..+-+.+.++. ..+-+...+.+..+.+.+.++.....+-..+.
T Consensus 77 prNKdri~e~l~~FV~~~fLs~e~i~~Kl~~~~~a~~igewls~~en~~~v~~~t~~l~~~~~~lld~~~iq~~ik~~v~ 156 (415)
T COG2733 77 PRNKDRIGENLGQFVQNNFLSPESINEKLRRADIASRIGEWLSQPENAQRVSQETLKLLSQLLELLDDDDIQRVIKRAVI 156 (415)
T ss_pred cccHHHHHHHHHHHHHHcccChHHHHHHHHhcCHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 34467778888888764 2222222 123334444455442 23344455666666666666655555555555
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhh-HHH
Q 015150 73 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC-VKE 151 (412)
Q Consensus 73 ~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-l~~ 151 (412)
..+....+.- .+...|..+...-+.+...+.++..+.+.+++ ..+++.+...+....+.-.+- ..|. ..+
T Consensus 157 ~~i~e~~~~~--~~~~vL~~l~~d~r~q~l~D~~~~~L~r~~~~--~~v~~~i~~~i~r~~~ee~p~-----f~~~~~~~ 227 (415)
T COG2733 157 RAIAEVYLGP--TAGRVLESLTADDRHQALLDKLIDRLIRWLLN--DKVREFIAAVIVRYLEEEHPL-----FAPIIIVS 227 (415)
T ss_pred HHHhcccccc--hHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHhcCcc-----chhhhhHH
Confidence 5555544322 23334444444444444445566666666554 567777777776665532221 1111 112
Q ss_pred hccCCcHHHHHHHHHHHHhcCcccChhH----HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh----hHHhhH
Q 015150 152 LSSDSSQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSL 223 (412)
Q Consensus 152 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~----~~~~~~ 223 (412)
.+.+.+ ++.+....+..+.. .++.. +...+.....++-.|+...-|...++. .+...-... .....+
T Consensus 228 ~v~~~~--I~~a~~~~~D~v~~-~p~h~~rk~~~R~~~~~i~~L~~Dp~~~~r~e~iK~--~~~~~~~i~~~~~~~w~~~ 302 (415)
T COG2733 228 LVGKRD--ISDAVNSFLDEVRR-DPDHKMRKDFDRFLFDLIDDLYHDPGMAARAEAIKS--YLKEDEAIATAAGDMWTSL 302 (415)
T ss_pred HHhhch--HHHHHHHHHHHHHh-CcCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcChHHHHHHHHHHHHH
Confidence 223322 55555555555443 11111 111233333333334333333222221 111100000 111222
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhHHHhhh
Q 015150 224 LPAIVELAEDRHWRVRLAIIEYIPLLASQL 253 (412)
Q Consensus 224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 253 (412)
-..+..=.++++..+|.-....+..+.+.+
T Consensus 303 ~~~l~~D~e~~~s~l~~~l~~~~~~~Ge~l 332 (415)
T COG2733 303 SEWLKEDYESEDSMLRKRLARAVQSVGEEL 332 (415)
T ss_pred HHHHHhcccCchhHHHHHHHHHHHHHHHHH
Confidence 233344456777788887777777766655
No 315
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=84.50 E-value=31 Score=31.22 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCch-hHHHHHHHHHHHHHHHHhChh--hh-hhhhHHHHHhhhcCCchHHHHHHHHHHHHhc
Q 015150 262 LGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGPD--WA-MQHIVPQVLEMINNPHYLYRMTILQAISLLA 328 (412)
Q Consensus 262 l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~--~~-~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~ 328 (412)
++..+..+|+.++ +.+-.-|+.-++.+++..+.. .+ ....-..++++++++++.||-.|+.++..+.
T Consensus 367 llkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 367 LLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 4455555554433 445555555555555544321 11 1122344455556666666666666555543
No 316
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=84.49 E-value=33 Score=31.51 Aligned_cols=165 Identities=13% Similarity=0.042 Sum_probs=92.6
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCch--HHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccC-C
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD--SVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-K 78 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d-~ 78 (412)
|.|-+.+++.+.+..+ .+. -+.++.+++..++- .+|..|.+.+..+...-..+.....-+..++.+.+. +
T Consensus 162 ~aV~~evAq~LCD~iR---~~~----~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e 234 (832)
T KOG3678|consen 162 AAVGREVAQGLCDAIR---LDG----GLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKERE 234 (832)
T ss_pred hhhhHHHHHhhhhHhh---ccc----hHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcC
Confidence 4455555555544333 122 34455556666653 469999999888765433332222223444444432 4
Q ss_pred ChHHHHHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH----HHHHhhhhhHHH
Q 015150 79 SWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKE 151 (412)
Q Consensus 79 ~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~ 151 (412)
.+...+..+-.|+.+..+.... ......++.+.-.+.-.++.+-..|..+|+..+-+-+.+ .+.+.+-.-+..
T Consensus 235 ~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~ 314 (832)
T KOG3678|consen 235 PVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFP 314 (832)
T ss_pred cHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhh
Confidence 4566666677777766543211 112334455555666667888888888888877665443 222333344444
Q ss_pred hccCCcHHHHHHHHHHHHhcCc
Q 015150 152 LSSDSSQHVRSALATVIMGMAP 173 (412)
Q Consensus 152 ~~~d~~~~vr~~~~~~l~~l~~ 173 (412)
+....+.-.|.-+|-+...++.
T Consensus 315 LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 315 LAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred hhcchHHHHHHHHHHHHhhhhh
Confidence 5555677778878777776653
No 317
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=84.40 E-value=5 Score=27.36 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=36.7
Q ss_pred hhHHHHHhh-ccCCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHH
Q 015150 66 HILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKV 129 (412)
Q Consensus 66 ~l~~~l~~l-~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l 129 (412)
.++..+... .+.++..+|...++++..+....+... -|..++..+.....|.+..+-..|.+++
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 333334333 444566777777777777766544322 2455666666666666666666665554
No 318
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=84.03 E-value=4.2 Score=37.69 Aligned_cols=109 Identities=9% Similarity=0.089 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHH---HhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh--
Q 015150 260 DKLGALCMQWLKDKVYSIRDAAANNVKRLAE---EFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-- 334 (412)
Q Consensus 260 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~---~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-- 334 (412)
..+...+++.|++++..|...+...+..++- .++..++.+.++..+.+.+..++...|....+.+..+.-.+.++
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 4477888888988776666666655554442 34456667788888888888777778888888888887666554
Q ss_pred --HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150 335 --ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 335 --~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~ 368 (412)
+....=+..++.+.+|+.+.|...+++.+.++..
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 2223335567888999999999999999988854
No 319
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=83.52 E-value=2.1 Score=23.91 Aligned_cols=30 Identities=33% Similarity=0.239 Sum_probs=25.7
Q ss_pred hhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 377 KSIRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 377 ~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
...+|.|.+++..++.+++..+..++..+.
T Consensus 11 ~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 11 AGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 457888888888889999999999998875
No 320
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=82.87 E-value=16 Score=26.53 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=21.9
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh
Q 015150 221 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 256 (412)
Q Consensus 221 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 256 (412)
..++..+.+.+.+++|++..-++..+..+.+..|..
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~ 71 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER 71 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH
Confidence 345555555566666666666666666666666554
No 321
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=82.86 E-value=5.4 Score=37.01 Aligned_cols=106 Identities=7% Similarity=0.130 Sum_probs=48.0
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHHHH---hCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH----
Q 015150 67 ILPVIVNFSQDKSWRVRYMVANQLYELCEA---VGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---- 139 (412)
Q Consensus 67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---- 139 (412)
+...+.+.+.+|+..+..-+.-.+.+.+-. ++.......++..+..++...+...|......+..+.-.+.++
T Consensus 432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~ 511 (743)
T COG5369 432 IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFK 511 (743)
T ss_pred hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhh
Confidence 444444444444444433333333322211 1222333444555555555445555555555555444333332
Q ss_pred HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcC
Q 015150 140 LAIQHILPCVKELSSDSSQHVRSALATVIMGMA 172 (412)
Q Consensus 140 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~ 172 (412)
.....-+..+..+.+|+.|.|...+.+.+-++.
T Consensus 512 ~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 512 FLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred hHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 112223445555556666666666665555543
No 322
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=81.79 E-value=20 Score=27.15 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=15.0
Q ss_pred hhHHHHHhhhc-CCchHHHHHHHHHHHHhccccchh
Q 015150 300 HIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSE 334 (412)
Q Consensus 300 ~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~ 334 (412)
..+-.+.+.+. +++..+..-++..+..+.+.+|..
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~ 73 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR 73 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH
Confidence 34444444443 233444444444444444444443
No 323
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.50 E-value=48 Score=31.26 Aligned_cols=83 Identities=10% Similarity=0.058 Sum_probs=49.8
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhh
Q 015150 299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKS 378 (412)
Q Consensus 299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 378 (412)
+..+..+.+.+..++...+.+++--++..-.....+....-+.|.... .|..-++...+.-+|+.++....+...+..
T Consensus 449 ~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~lL~Pi~~s--td~pie~~~~asltLg~vFvGtcngD~ts~ 526 (881)
T COG5110 449 PPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLELLQPIMFS--TDSPIEVVFFASLTLGSVFVGTCNGDLTSL 526 (881)
T ss_pred chHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHHhhhhhcC--CCCcHHHHHHHHHhhhheEeeccCchHHHH
Confidence 456677788888899999999998888765544444444444444432 233335555666677766544444444444
Q ss_pred HHHHH
Q 015150 379 IRPCL 383 (412)
Q Consensus 379 i~~~l 383 (412)
++..+
T Consensus 527 ilqtf 531 (881)
T COG5110 527 ILQTF 531 (881)
T ss_pred HHHHH
Confidence 44433
No 324
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=81.32 E-value=1 Score=22.79 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhh
Q 015150 355 IKFNVAKVLQSLIP 368 (412)
Q Consensus 355 vR~~~~~~l~~l~~ 368 (412)
||..++.+|+.+..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 56667777776654
No 325
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.08 E-value=18 Score=33.55 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=72.6
Q ss_pred HhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHH
Q 015150 230 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQV 305 (412)
Q Consensus 230 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l 305 (412)
.+.++||..-..+|..+..--. + ....+-.+.+.+++.++.|..-|+..|..+++++|..+. .+.+++..
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~--~----~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~em 86 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEG--G----PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEM 86 (470)
T ss_pred cccCccHHHHHHHHHHHhcCcc--C----cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4567888877776665532111 1 124666778889988899999999999999999998654 35677777
Q ss_pred HhhhcCC--chHHHHHHHHHHHHhccccch
Q 015150 306 LEMINNP--HYLYRMTILQAISLLAPVMGS 333 (412)
Q Consensus 306 ~~~~~~~--~~~~r~~~~~~l~~l~~~~~~ 333 (412)
+...+.. ...||..++..|....+.++.
T Consensus 87 Vk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 87 VKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 7766654 578999999999888777765
No 326
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=80.70 E-value=20 Score=26.28 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChh-hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhcccc
Q 015150 258 FDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM 331 (412)
Q Consensus 258 ~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 331 (412)
+...++|.+...+. ...++.|.++...++.+.....-. ...+.++..+......... ...++.++..+.+.-
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 44668999999998 778899999999999988765421 1222233333332222222 244555666665443
No 327
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=79.98 E-value=36 Score=28.79 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=47.3
Q ss_pred hhhhhHHHHHhhccCC-ChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 015150 63 CVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 134 (412)
Q Consensus 63 ~~~~l~~~l~~l~~d~-~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 134 (412)
..-++.|++....+.. -..+|....-.+|.++..-..+. ...+++|.+.+.++..+.-.|..|...+.++..
T Consensus 92 iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~ 168 (262)
T PF04078_consen 92 IPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILL 168 (262)
T ss_dssp GGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred chhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 4455888887666553 35678888888888876333222 235789999999888888888888888887754
No 328
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=79.59 E-value=17 Score=27.61 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=25.3
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 015150 104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 133 (412)
Q Consensus 104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 133 (412)
+++...+..++.+.+.+|++.|++|+..+-
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 567777888999999999999999998763
No 329
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=77.92 E-value=23 Score=25.37 Aligned_cols=59 Identities=19% Similarity=0.348 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH
Q 015150 314 YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV 374 (412)
Q Consensus 314 ~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~ 374 (412)
..-|..++.+++.+.+.+|.. .+.++++-.|...+. .++.|..++++...+...++++.
T Consensus 29 ~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 29 YNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 455777888888887765543 345556666666665 45688888888888888877753
No 330
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=77.53 E-value=29 Score=26.35 Aligned_cols=100 Identities=12% Similarity=0.173 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHh-ccccchhHHHH
Q 015150 260 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLL-APVMGSEITCS 338 (412)
Q Consensus 260 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l-~~~~~~~~~~~ 338 (412)
+.+...+..+|.+++.+|+..|+.++-.+-. +.+ ...-+.+.+++.|..+ |.........- ...+.. ...+
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~----~~l-~pY~d~L~~Lldd~~f--rdeL~~f~~~~~~~~I~~-ehR~ 87 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD----PYL-TPYKDNLENLLDDKTF--RDELTTFNLSDESSVIEE-EHRP 87 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHH-HhHHHHHHHHcCcchH--HHHHHhhcccCCcCCCCH-HHHh
Confidence 5577788899999999999999999876543 111 2233556666666543 33322222111 011222 2455
Q ss_pred hhHHHHHhhc----CC----CCc--hHHHHHHHHHHHHh
Q 015150 339 QLLPVVINAS----KD----RVP--NIKFNVAKVLQSLI 367 (412)
Q Consensus 339 ~il~~l~~~l----~d----~~~--~vR~~~~~~l~~l~ 367 (412)
.++|.++..| .. ... .-|.+++..|+.+.
T Consensus 88 ~l~pvvlRILygk~~~~~~~~~~~~~rR~aIL~~L~~l~ 126 (141)
T PF07539_consen 88 ELMPVVLRILYGKMQSRKGSGSKKASRRAAILRFLAGLS 126 (141)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHhCCC
Confidence 6777666554 11 111 33556666666553
No 331
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.51 E-value=10 Score=30.65 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh--hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhcc---ccchh
Q 015150 260 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAP---VMGSE 334 (412)
Q Consensus 260 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~---~~~~~ 334 (412)
..++|.+...|.+.+..-|.-|-.-+..++...|++. ...+++..+...+...+..+...++.++..+.- ..|..
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~a 192 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAA 192 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchh
Confidence 4578888888888888888888777777777666442 235666677778888888888888888887753 34443
Q ss_pred --HHHHhhHHHHHh
Q 015150 335 --ITCSQLLPVVIN 346 (412)
Q Consensus 335 --~~~~~il~~l~~ 346 (412)
+|+..++|.+-.
T Consensus 193 LVPfYRQlLp~~n~ 206 (262)
T KOG3961|consen 193 LVPFYRQLLPVLNT 206 (262)
T ss_pred hhhHHHHhhhhhhh
Confidence 577888886643
No 332
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=76.70 E-value=25 Score=25.18 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=42.3
Q ss_pred HHHHHHhhcccC----hHHHHHHHHHHHHHHHhhchh--hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh
Q 015150 185 LPIFLSLLKDEF----PDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 257 (412)
Q Consensus 185 ~~~l~~~l~d~~----~~vr~~~~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 257 (412)
+..+.+.+.|.+ ..-|+.++++++.+.+..|.. ...++++-.+...++ .+..|..++.++..+...+..+.
T Consensus 13 l~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 13 LAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 344444455543 245778888888888765532 122333334444443 45688888888888887776644
No 333
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.38 E-value=76 Score=30.63 Aligned_cols=108 Identities=9% Similarity=0.110 Sum_probs=62.4
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH-----------------------HHHHhhhh-------hHHHhccC
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-----------------------LAIQHILP-------CVKELSSD 155 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-----------------------~~~~~~~~-------~l~~~~~d 155 (412)
.+..+.+++.+.++.+++.+...|..+.+-+-+. .+.+.++. -+....++
T Consensus 211 ~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~yE~~Ll~~Yk~ylQkLe~~vK~ 290 (704)
T KOG2153|consen 211 KLKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREYEQALLKQYKSYLQKLEQFVKD 290 (704)
T ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667777777888888888777765543220 11111221 11112222
Q ss_pred C---cH---HHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150 156 S---SQ---HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 213 (412)
Q Consensus 156 ~---~~---~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~ 213 (412)
. .+ ..-..++.|+..+....+.-.+.+.++..+..++.|....++..++..+..+...
T Consensus 291 ~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~ 354 (704)
T KOG2153|consen 291 LSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEN 354 (704)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcC
Confidence 1 01 1223445555555554444455678888888888888888888888877766543
No 334
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.97 E-value=1.2e+02 Score=32.79 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=70.4
Q ss_pred HHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH--HHhhHHHHHHhhcCCCCccHH
Q 015150 318 MTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSEDPDVDVR 395 (412)
Q Consensus 318 ~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~i~~~l~~l~~d~~~~vr 395 (412)
...+-++++.+...+.+ +..+....+....|..++.|..++.++..++...|..+ ..++.+|.+..+++|.+..|.
T Consensus 1522 ~~li~~i~~~~~a~~~d--~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve 1599 (1621)
T KOG1837|consen 1522 KLLIAEIASDSVADKDD--LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVE 1599 (1621)
T ss_pred HHHHHHHHhhccCChhh--hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHH
Confidence 33444444444333333 44444555566678889999999999999999999874 568999999999999999999
Q ss_pred HHHHHHHHHhHHhhhC
Q 015150 396 FFATQALQSKDQVMMS 411 (412)
Q Consensus 396 ~~a~~al~~~~~~~~~ 411 (412)
..+...+..+-..+|+
T Consensus 1600 ~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1600 CLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred HHHHHHHHHHHHHhch
Confidence 9999988888888875
No 335
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=75.47 E-value=48 Score=29.74 Aligned_cols=73 Identities=10% Similarity=-0.023 Sum_probs=34.5
Q ss_pred HHHHHHHhccCCchHHHHHHHHhHHHHhhccCc----hhhhhhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHHhCCC
Q 015150 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE 100 (412)
Q Consensus 28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~----~~~~~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~~ 100 (412)
.+..+.+-++..++.|-..|+..+..++..++. +.....+...+..++. ...+.|+......+...++.+.++
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 344444445555555555555555555555443 2222233444444444 234555555555555555544433
No 336
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=75.41 E-value=80 Score=30.40 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=59.5
Q ss_pred HHHHHhccccchhHHHHhhHHHHHhhc-CCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHh----hcCCCCccHHH
Q 015150 322 QAISLLAPVMGSEITCSQLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE----LSEDPDVDVRF 396 (412)
Q Consensus 322 ~~l~~l~~~~~~~~~~~~il~~l~~~l-~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~----l~~d~~~~vr~ 396 (412)
..++.+.+.+..+ ....++-.+.+.+ ..+...+|-.++..++.+++..-++...+.+.|.+.. ++.|+++-+++
T Consensus 463 ~l~~~~~~~l~~~-~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q 541 (559)
T PF14868_consen 463 SLLSFFIQLLDPQ-LIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQ 541 (559)
T ss_pred HHHHHHHHhcChH-HHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHH
Confidence 3334443444433 2334444455555 4566669999999999999877666555566665544 68999999999
Q ss_pred HHHHHHHHhHHh
Q 015150 397 FATQALQSKDQV 408 (412)
Q Consensus 397 ~a~~al~~~~~~ 408 (412)
.|.+|++.+++.
T Consensus 542 ~ALeAF~~FAe~ 553 (559)
T PF14868_consen 542 HALEAFGQFAER 553 (559)
T ss_pred HHHHHHHHHhcc
Confidence 999999999864
No 337
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.15 E-value=96 Score=31.17 Aligned_cols=137 Identities=10% Similarity=0.035 Sum_probs=76.2
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 015150 26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD 105 (412)
Q Consensus 26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 105 (412)
+..+..+.+.+.+......-.+...+..+....+.....+..+=-+-....+.+-..|...++....-..++.+-....+
T Consensus 23 ~a~~~~ldkGlr~~~t~eqpeavvr~~RLFek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE 102 (970)
T KOG1988|consen 23 NAVLMELDKGLRSGKTSEQPEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAE 102 (970)
T ss_pred hHHHHHHhhcccccccccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhh
Confidence 33444555555533322222233334444444333333333333444556677888999888888755444444344455
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHH
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSAL 164 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~ 164 (412)
++..+.......|+.-|...+..++.+...+++....++++.. .+.+..+-++|.+.
T Consensus 103 ~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEfn~~hhlIr~--sl~S~helE~eaa~ 159 (970)
T KOG1988|consen 103 FLRRIFYVDHSNDPVARALLLRILGQLSALIPEFNQVHHLIRI--SLDSHHELEVEAAE 159 (970)
T ss_pred hhheeEEeecCCCHHHHHHHHHHHHHhhhhcccccchhHHHHH--HhcCccchhhHHHH
Confidence 5665555666778889999999999998877765433332221 12233355666543
No 338
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=75.07 E-value=18 Score=23.70 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhccc-cchhHHH-HhhHHHHHhhcC-CCCchHHHHHHHHHHHHhhhh
Q 015150 317 RMTILQAISLLAPV-MGSEITC-SQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIV 370 (412)
Q Consensus 317 r~~~~~~l~~l~~~-~~~~~~~-~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~ 370 (412)
..+++.+++.++.. .|..... ..+++.+.+... +++..+|-++.-+|+-++...
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 34677778877643 3333332 257777777654 677888888888888887643
No 339
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=74.51 E-value=1.1e+02 Score=31.46 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHhccC-CchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhccCCC
Q 015150 4 VRRSAATNLGKFAATVE-AAHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKS 79 (412)
Q Consensus 4 vR~~a~~~l~~~~~~~~-~~~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~d~~ 79 (412)
-|.+.++.|+...++.. .+.....+.+.+..+..- +..+.|..+...+..+...-.. ...+...+..+.+.-...+
T Consensus 43 ~R~rmi~~i~~~~k~~~~~e~aI~~lw~~~~DlI~pN~~Ae~R~~vl~l~kR~v~TQ~~~l~I~R~~FF~vI~~~p~~ed 122 (1697)
T KOG3687|consen 43 NRIRMIGQICEVAKTKKFEEHAIEALWKAVADLIQPNRTAEARHAVLALLKRIVQTQGERLGILRALFFKVIKDYPSNED 122 (1697)
T ss_pred HHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCcchHH
Confidence 36777777777776533 123333444444444543 3456788888777776654222 1122333333433333344
Q ss_pred hHHHHHHHHHHHH
Q 015150 80 WRVRYMVANQLYE 92 (412)
Q Consensus 80 ~~vR~~~~~~l~~ 92 (412)
-..|...++.|..
T Consensus 123 L~~rLe~L~~LTD 135 (1697)
T KOG3687|consen 123 LHERLEVLKALTD 135 (1697)
T ss_pred HHHHHHHHHHHhh
Confidence 5555555555543
No 340
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=74.35 E-value=92 Score=34.03 Aligned_cols=140 Identities=15% Similarity=0.124 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhc-cCCChHHHHHHHHHHHHHHHHhCCCC
Q 015150 23 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEP 101 (412)
Q Consensus 23 ~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~-~d~~~~vR~~~~~~l~~l~~~~~~~~ 101 (412)
.+...++.+...++.++++.++..+......+...+.. ....+++..+...+ ...+..| .+++..|..++...+...
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds-~~qqeVv~~Lvthi~sg~~~ev-~~aL~vL~~L~~~~~~~l 508 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS-YCQQEVVGALVTHIGSGNSQEV-DAALDVLCELAEKNPSEL 508 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H-HHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHhccHHHH
Confidence 34566788888899999999999999999988888743 35566776665554 4444555 577888888886432221
Q ss_pred cc-cchHHHHHHhcCCC-hHHHHHHHHHHHHHHHHhhC--HHHHHHhhhhhHHHhccCCcHHHHHHHH
Q 015150 102 TR-SDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILN--PELAIQHILPCVKELSSDSSQHVRSALA 165 (412)
Q Consensus 102 ~~-~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~~~~vr~~~~ 165 (412)
.. ...+..+...+.+= ..++|.. +..+..++-.-+ ...+...+.-.+.+.++.++...+...+
T Consensus 509 ~~fa~~l~giLD~l~~Ls~~qiR~l-f~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GI 575 (1426)
T PF14631_consen 509 QPFATFLKGILDYLDNLSLQQIRKL-FDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGI 575 (1426)
T ss_dssp HHTHHHHHGGGGGGGG--HHHHHHH-HHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhH
Confidence 10 11222233333332 3456654 555554442212 1234555667778888888887776543
No 341
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=74.01 E-value=16 Score=23.97 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhh-hchHHHH-hhHHHHHHhh-cCCCCccHHHHHHHHHHHhHHh
Q 015150 356 KFNVAKVLQSLIPI-VDQSVVE-KSIRPCLVEL-SEDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 356 R~~~~~~l~~l~~~-~~~~~~~-~~i~~~l~~l-~~d~~~~vr~~a~~al~~~~~~ 408 (412)
.++++.++++++.. .|-+.+. ..+++.+.++ .+.|...+|-.+..+++.+...
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 46889999999765 4544444 3688888885 5689999999999999988753
No 342
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.74 E-value=38 Score=31.61 Aligned_cols=97 Identities=12% Similarity=0.171 Sum_probs=56.2
Q ss_pred hhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHH----HhhHHHHH
Q 015150 308 MINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV----EKSIRPCL 383 (412)
Q Consensus 308 ~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~----~~~i~~~l 383 (412)
.+.+++|..-...|..+..--. + -....-.+.+.++++++.|..-|+..|..+.+..|..+. ...+++.+
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~--~----~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~em 86 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEG--G----PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEM 86 (470)
T ss_pred cccCccHHHHHHHHHHHhcCcc--C----cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4455667665555555543211 1 124555566666777777777777766666666665422 23444444
Q ss_pred Hhh-cCC-CCccHHHHHHHHHHHhHHhhh
Q 015150 384 VEL-SED-PDVDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 384 ~~l-~~d-~~~~vr~~a~~al~~~~~~~~ 410 (412)
.++ -+. ++..||..+...+.++.+..+
T Consensus 87 Vk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 87 VKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred HhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 443 344 566777777777777777664
No 343
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.58 E-value=83 Score=29.29 Aligned_cols=93 Identities=16% Similarity=0.182 Sum_probs=59.5
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHH--HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh--hH
Q 015150 104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA--IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DA 179 (412)
Q Consensus 104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~ 179 (412)
..++..+.+.+.-.+...-...+..|.++.-+...... ...++.-+.+++.-..+..|.+....+-++.-.-|- ..
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KM 382 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKM 382 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHH
Confidence 45666666766655555555555555555443333322 233677777888888899999988888777644332 33
Q ss_pred HHHhhHHHHHHhhcccC
Q 015150 180 TIEQLLPIFLSLLKDEF 196 (412)
Q Consensus 180 ~~~~l~~~l~~~l~d~~ 196 (412)
+...++|.+..++.++.
T Consensus 383 v~~GllP~l~~ll~~d~ 399 (791)
T KOG1222|consen 383 VNGGLLPHLASLLDSDT 399 (791)
T ss_pred hhccchHHHHHHhCCcc
Confidence 34578899998887643
No 344
>COG2733 Predicted membrane protein [Function unknown]
Probab=71.94 E-value=76 Score=28.57 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=15.3
Q ss_pred hcccChHHHHHHHHHHHHHHHhh
Q 015150 192 LKDEFPDVRLNIISKLDQVNQVI 214 (412)
Q Consensus 192 l~d~~~~vr~~~~~~l~~i~~~~ 214 (412)
.++++..+|...++++..+++.+
T Consensus 310 ~e~~~s~l~~~l~~~~~~~Ge~l 332 (415)
T COG2733 310 YESEDSMLRKRLARAVQSVGEEL 332 (415)
T ss_pred ccCchhHHHHHHHHHHHHHHHHH
Confidence 34566777777777777766654
No 345
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=71.44 E-value=61 Score=27.27 Aligned_cols=112 Identities=15% Similarity=0.236 Sum_probs=52.0
Q ss_pred HHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHH-----HHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhh
Q 015150 225 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL-----GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQ 299 (412)
Q Consensus 225 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l-----~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 299 (412)
..+...+.+.++.+|..+++.+..+.-......-.+.- ...=+..+....+-+....++. + .+
T Consensus 46 ~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~----------E--a~ 113 (239)
T PF11935_consen 46 DRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEA----------E--AN 113 (239)
T ss_dssp HHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHH----------H--HH
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHH----------H--HH
Confidence 34455567778888888888887777655332110000 0000001111111111111111 0 12
Q ss_pred hhHHHHHhhhcCCc--hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCC
Q 015150 300 HIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD 350 (412)
Q Consensus 300 ~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d 350 (412)
.++..++..+.++. ..+-.+++.++..++..-+ .+...+++.+.++-.+
T Consensus 114 ~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP--~~~~~Il~~ll~~~~~ 164 (239)
T PF11935_consen 114 GLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP--QFMSRILPALLSFNPN 164 (239)
T ss_dssp HHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG--GGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhcCcc
Confidence 35555555555443 4555666666766664322 3567788877776543
No 346
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=67.36 E-value=64 Score=25.93 Aligned_cols=65 Identities=18% Similarity=0.136 Sum_probs=52.9
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh
Q 015150 69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 136 (412)
Q Consensus 69 ~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 136 (412)
+.+.....+++.-+|+.++-.+...... +.....+++.+..++.|++..||.+...+|..++...
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~ 172 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKD 172 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence 6777888888888888887777665544 3446788999999999999999999999999988873
No 347
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=67.24 E-value=57 Score=25.31 Aligned_cols=114 Identities=13% Similarity=0.074 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCchh------HHHHHHHHHHHHHHHH--hChhhhhhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhcc
Q 015150 260 DKLGALCMQWLKDKVY------SIRDAAANNVKRLAEE--FGPDWAMQHIVPQVLEMINNPH--YLYRMTILQAISLLAP 329 (412)
Q Consensus 260 ~~l~~~l~~~l~d~~~------~vr~~a~~~l~~l~~~--~~~~~~~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~ 329 (412)
..=++.+.++.++... ++...++.++.++.+. ++=+.+...++..+..+.+.+. ..+-+.++..+..+..
T Consensus 10 ~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl 89 (160)
T PF11841_consen 10 RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVL 89 (160)
T ss_pred ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHh
Confidence 3345666666666663 4445555555555552 1123344556666666666443 4566666666666654
Q ss_pred ccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH
Q 015150 330 VMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 373 (412)
Q Consensus 330 ~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 373 (412)
.-+.- -..+.-++.++..++++++.++..++..+..+....++.
T Consensus 90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 22211 112334566677777777777777777666666655443
No 348
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=66.79 E-value=95 Score=27.67 Aligned_cols=147 Identities=11% Similarity=0.052 Sum_probs=88.9
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh----hh-----hhhhHHHHHhhhc-CCc---------hHHHHHHHHH
Q 015150 263 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WA-----MQHIVPQVLEMIN-NPH---------YLYRMTILQA 323 (412)
Q Consensus 263 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~-----~~~~l~~l~~~~~-~~~---------~~~r~~~~~~ 323 (412)
+..+...|+.....+...+++.|..++...|.. .+ ....+|.+...-+ +.. ..+|..++..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 555666677776767777777777777633321 11 1223344432211 101 2899999999
Q ss_pred HHHhccccchhH-----HHHhhHHHHHhhcCCCCchHHHHHHHHHHH-Hhhh------hchHHHHhhHHHHHHhhcCCCC
Q 015150 324 ISLLAPVMGSEI-----TCSQLLPVVINASKDRVPNIKFNVAKVLQS-LIPI------VDQSVVEKSIRPCLVELSEDPD 391 (412)
Q Consensus 324 l~~l~~~~~~~~-----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~-l~~~------~~~~~~~~~i~~~l~~l~~d~~ 391 (412)
+-.+....+... -...++..+++.+.+..+.+-..++.++.. +... .....+.+..+..+..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 988877655431 122357778888877777777777777764 3211 1112455667777777665555
Q ss_pred c----cHHHHHHHHHHHhHHhh
Q 015150 392 V----DVRFFATQALQSKDQVM 409 (412)
Q Consensus 392 ~----~vr~~a~~al~~~~~~~ 409 (412)
. .++..+.+.|-.++..-
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 5 88888888888877543
No 349
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=65.85 E-value=74 Score=26.08 Aligned_cols=134 Identities=19% Similarity=0.159 Sum_probs=76.1
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccC-CcHHHHHHHHHHH-HhcCcccChhHHH
Q 015150 104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSD-SSQHVRSALATVI-MGMAPILGKDATI 181 (412)
Q Consensus 104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l-~~l~~~~~~~~~~ 181 (412)
+++...+..+.+++.-+.|..|+..+...-+..+++. ++.+...+.+ .+|.+-...+..+ +.+... .
T Consensus 45 ~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-----~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~------~ 113 (208)
T cd07064 45 EELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-----LPLLEELITTKSWWDTVDSLAKVVGGILLAD------Y 113 (208)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHcCCchHHHHHHHHHHHhHHHHhC------C
Confidence 3455666677888878888888888877655554442 2333333333 4566555444433 222111 1
Q ss_pred HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhh
Q 015150 182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 252 (412)
Q Consensus 182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 252 (412)
+.+.+.+.....+++.-+|..++-+.-...+... .+.+...+...+.|+..-++.++...|..+++.
T Consensus 114 ~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~----~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 114 PEFEPVMDEWSTDENFWLRRTAILHQLKYKEKTD----TDLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccC----HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 2234566667777776666666654333333211 134555566667777777777777777666654
No 350
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=64.41 E-value=75 Score=25.64 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=49.2
Q ss_pred hhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh-hHHhhHHHHHHHHhcCCC-----chHHHHHHHHhhHHHhhhChh
Q 015150 183 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDRH-----WRVRLAIIEYIPLLASQLGVG 256 (412)
Q Consensus 183 ~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~-~~~~~~~~~l~~~~~d~~-----~~vr~~~~~~l~~l~~~~~~~ 256 (412)
.++..+.+..-+.=+.||..|..++..+....... ...+ -.+.+.+....+. |.. ...++..+.+.+...
T Consensus 7 ~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~---~~~~F~~l~~LL~~~ 82 (193)
T PF12612_consen 7 QIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSS---SSEYFPRLVKLLDLP 82 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCC---HHHHHHHHHHHhccH
Confidence 33444444444444667777777777776332110 0001 1122333222211 221 223344444444444
Q ss_pred hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 015150 257 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 290 (412)
Q Consensus 257 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 290 (412)
.+...++.-+..........+...+..+|-.++.
T Consensus 83 ~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~ 116 (193)
T PF12612_consen 83 EYRYSLLSGLVVSAGGLTESLVRASSAALLSYLR 116 (193)
T ss_pred HHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHH
Confidence 4555555555555566666666666666666665
No 351
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=64.05 E-value=2.3e+02 Score=31.05 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=48.7
Q ss_pred hhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH---HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 339 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 339 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
..+..|++.|+...-.+...++.+|-++.-.-..+ ....--.+.+..+.......+-.-++.||..+..
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 46777888888887778888888887775432221 1234567788888888888888888888877654
No 352
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=63.43 E-value=63 Score=25.70 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=33.5
Q ss_pred CChHHHHHHHHHHHHHHHH---hCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 015150 78 KSWRVRYMVANQLYELCEA---VGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 133 (412)
Q Consensus 78 ~~~~vR~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 133 (412)
.+...-..+++|+..++.. ...-...+..++.+...+.+++..+|..+++.|..++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3444455555555544331 0111113566788888888888999999999988775
No 353
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=63.28 E-value=91 Score=26.24 Aligned_cols=20 Identities=35% Similarity=0.318 Sum_probs=12.0
Q ss_pred hcCCChHHHHHHHHHHHHHH
Q 015150 113 LLRDNEAEVRIAAAGKVTKI 132 (412)
Q Consensus 113 ~l~d~~~~vr~~a~~~l~~l 132 (412)
+++|+++.|.+.++.+...+
T Consensus 1 Ll~d~d~~v~K~~I~~~~~i 20 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSI 20 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHH
Confidence 35666777777666666554
No 354
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=62.62 E-value=46 Score=27.27 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=35.7
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCc
Q 015150 103 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 173 (412)
Q Consensus 103 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 173 (412)
++++++.+....++.+...|.+++.......+ ++.....+++.+..++.|+...|+.+..++|.+++.
T Consensus 116 ~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k---~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k 183 (222)
T COG4912 116 WPDLIEEWAADAEEDNRWERRAAIVHQLVYKK---KTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGK 183 (222)
T ss_pred CHHHHHHHHhccccchHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 34555555444444444444444444333222 222233456666666677677777777666666654
No 355
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=62.59 E-value=2.1e+02 Score=30.10 Aligned_cols=151 Identities=15% Similarity=0.173 Sum_probs=87.7
Q ss_pred HHHHHHHhHHHHhhccCc-------hhhhhhhHHHHHhhc-cCCChHHHHHHHHHHHHHHHHhC--CCCcccchHHHHHH
Q 015150 43 VRLLAVEGCGALGKLLEP-------QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVG--PEPTRSDVVPAYVR 112 (412)
Q Consensus 43 ~r~~a~~~l~~i~~~~~~-------~~~~~~l~~~l~~l~-~d~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ 112 (412)
--.+++.++.++....++ +...-..++++..++ ...++.+...+++.+..+...-+ .+......+..+..
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 345788888888887653 221222444455443 45677888888887765543211 11222335556666
Q ss_pred hcCCChHHHHHHHHHHHHHHHHhh--CHHHHHHhhhhhHHH-hccCCcHHHHHHHHHHHHhcCc--ccChhHH---HHhh
Q 015150 113 LLRDNEAEVRIAAAGKVTKICRIL--NPELAIQHILPCVKE-LSSDSSQHVRSALATVIMGMAP--ILGKDAT---IEQL 184 (412)
Q Consensus 113 ~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~~l~~-~~~d~~~~vr~~~~~~l~~l~~--~~~~~~~---~~~l 184 (412)
++.+ .+..|..++..|.+++... ..+...+..+..+.. ++...++.+|..+++.++.+.. ..|+... ...+
T Consensus 1821 lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFL 1899 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFL 1899 (2235)
T ss_pred HHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhc
Confidence 6654 5889999999999887642 222223323334443 3456788999999999998753 2344332 1233
Q ss_pred HHHHHHhhcc
Q 015150 185 LPIFLSLLKD 194 (412)
Q Consensus 185 ~~~l~~~l~d 194 (412)
-..+.+.+.|
T Consensus 1900 P~~f~d~~RD 1909 (2235)
T KOG1789|consen 1900 PEIFADSLRD 1909 (2235)
T ss_pred hHHHHHHHhc
Confidence 3345555555
No 356
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.36 E-value=2.4e+02 Score=30.83 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=37.8
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 015150 67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 133 (412)
Q Consensus 67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 133 (412)
+.|+-.-...+.+..||...++|+..-.+ .-|..++..+.....|.+..+-..+.+.+..+.
T Consensus 1038 l~Pfe~im~~s~s~~Irelv~rC~~~nik-----SGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~ 1099 (1514)
T KOG0929|consen 1038 LRPFEHIMKRSSSAEIRELVVRCISSNIK-----SGWKNIFKIFTTAASDSSKNIVELAFETVSKIL 1099 (1514)
T ss_pred cCcchHHhhccCcchhHHHHHhhhhhhhh-----hhhhHHHHHHHHhhccchhhHHHHhHHHHHHHH
Confidence 44444444455667788777777762222 235566667777777777777777776666443
No 357
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=61.21 E-value=99 Score=26.00 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=50.8
Q ss_pred hhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 015150 63 CVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 133 (412)
Q Consensus 63 ~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 133 (412)
+.-++.|++.....+ +..-.|..+.-.++.+.+.-+.+. ...+++|.+.+.++..+..-+..|...+.++.
T Consensus 121 iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 121 IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 344577777766655 445678887777777776544332 23578999999998888888888888887764
No 358
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=61.21 E-value=99 Score=26.00 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=49.0
Q ss_pred HHHHHHHHhcC-chhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHHhhhcCCchHHHHHHHHHHHHhc
Q 015150 262 LGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLEMINNPHYLYRMTILQAISLLA 328 (412)
Q Consensus 262 l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~ 328 (412)
+.|.+.....+ +....|-.++..++.+++.=+.+.. ..+++|.+++.....+.--+..+...++.+.
T Consensus 125 lYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 125 LYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred hHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 44554444444 3455999999999999986555432 3578899999999988888888888888774
No 359
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=60.59 E-value=1.2e+02 Score=26.76 Aligned_cols=17 Identities=18% Similarity=-0.025 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 015150 118 EAEVRIAAAGKVTKICR 134 (412)
Q Consensus 118 ~~~vr~~a~~~l~~l~~ 134 (412)
...+|.+|++++..+..
T Consensus 51 ~f~lR~AA~~c~kay~~ 67 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFY 67 (312)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHh
Confidence 57899999999988765
No 360
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=60.27 E-value=2.7e+02 Score=30.72 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh-HHH
Q 015150 259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-ITC 337 (412)
Q Consensus 259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~ 337 (412)
.+.++.+...++..+++.|+.-+......+...+. .+..++++..|.....+.+..--.+++..+..++...+.. .-.
T Consensus 433 f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd-s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f 511 (1426)
T PF14631_consen 433 FPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD-SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF 511 (1426)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 35567777788899999999999888888887774 3456788888888876666555578899998888654433 112
Q ss_pred HhhHHHHHhhcCC-CCchHHHHHHHHHHHHhhhhch--HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150 338 SQLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409 (412)
Q Consensus 338 ~~il~~l~~~l~d-~~~~vR~~~~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~ 409 (412)
..++..++.++.+ ..+++| .....+..++-.-.. ....+++.-.+.+.++.++...+..-.-+.-++...|
T Consensus 512 a~~l~giLD~l~~Ls~~qiR-~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~~l 585 (1426)
T PF14631_consen 512 ATFLKGILDYLDNLSLQQIR-KLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIKHL 585 (1426)
T ss_dssp HHHHHGGGGGGGG--HHHHH-HHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHH-HHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Confidence 2333334444444 234566 345666655422121 2344556666777777777766655444444444444
No 361
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=60.08 E-value=61 Score=25.76 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHHHhccc-cchhHH--HHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150 313 HYLYRMTILQAISLLAPV-MGSEIT--CSQLLPVVINASKDRVPNIKFNVAKVLQSLI 367 (412)
Q Consensus 313 ~~~~r~~~~~~l~~l~~~-~~~~~~--~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 367 (412)
+......++.++..+... .|.+.+ .+..+..+...+..+++.+|..++..|+.++
T Consensus 129 ~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 129 DIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 345566677777776542 232222 3457777888888888888888888887664
No 362
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=60.01 E-value=1.2e+02 Score=26.67 Aligned_cols=7 Identities=0% Similarity=0.268 Sum_probs=2.6
Q ss_pred hhHHHHH
Q 015150 339 QLLPVVI 345 (412)
Q Consensus 339 ~il~~l~ 345 (412)
.++..++
T Consensus 281 ~Viq~~l 287 (322)
T cd07920 281 YVIQTAL 287 (322)
T ss_pred HHHHHHH
Confidence 3333333
No 363
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=58.79 E-value=2e+02 Score=28.74 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=49.0
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 015150 67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 134 (412)
Q Consensus 67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 134 (412)
.+..+..+..|+=..|+..++..+..+... .......++-.+..-+.|++..+-..|...|..+..
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~--kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTN--KPEQENNLLVLLVNKLGDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHh
Confidence 555666778888888998888877766542 222235688888888999999888888888877654
No 364
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.44 E-value=52 Score=29.34 Aligned_cols=64 Identities=9% Similarity=0.079 Sum_probs=32.8
Q ss_pred HHHHhhhcCCchHHHHHHHHHHHHhccccc-hhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150 303 PQVLEMINNPHYLYRMTILQAISLLAPVMG-SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 366 (412)
Q Consensus 303 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~-~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 366 (412)
..+....++++..-|..+...++.....-+ ...-.+.+-+.+..++.|+++.+|...+.+|++.
T Consensus 10 ~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~ 74 (364)
T COG5330 10 QDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQC 74 (364)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhC
Confidence 344445555555555555555554444433 2233444555555555555556665555555543
No 365
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.38 E-value=1.7e+02 Score=27.65 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=37.6
Q ss_pred hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 015150 64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 135 (412)
Q Consensus 64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 135 (412)
...+..++.....--++..|...+++|.-+... +.....+++..++.++.-.+...|..+..-+..-.+.
T Consensus 18 P~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk--~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn 87 (616)
T KOG2229|consen 18 PSELKDLLRTNHTVLPPELREKIVKALILLRNK--NLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKN 87 (616)
T ss_pred hHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc--CcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 344555555554445566677666666544321 1222345666666665555555666666655555443
No 366
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=57.89 E-value=2.1e+02 Score=28.60 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=51.0
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHH---HHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcCcccChh-
Q 015150 104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKD- 178 (412)
Q Consensus 104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~- 178 (412)
..++..+..++.++ .-|..++..|+.+...-++-. ....+++.+++++ .|.+..+-..++.++..+...+...
T Consensus 69 K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l 146 (668)
T PF04388_consen 69 KHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSL 146 (668)
T ss_pred HHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchh
Confidence 45666666666653 467777777777766544331 1223555555544 5777777777777777766655432
Q ss_pred -HHHHhhHHHHHHhh
Q 015150 179 -ATIEQLLPIFLSLL 192 (412)
Q Consensus 179 -~~~~~l~~~l~~~l 192 (412)
.+...|+..|..++
T Consensus 147 ~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 147 GPHLPDLFNIFGRLL 161 (668)
T ss_pred hHHHHHHHHHHHHHH
Confidence 22345555555554
No 367
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.74 E-value=2e+02 Score=28.04 Aligned_cols=52 Identities=17% Similarity=0.056 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150 123 IAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 174 (412)
Q Consensus 123 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 174 (412)
..|+.|+..+....+.-.+.+.++..+..+++|+...++..+++++-.+...
T Consensus 303 ~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~ 354 (704)
T KOG2153|consen 303 QVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEN 354 (704)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcC
Confidence 3445555555555544455666777777777777777777777777766543
No 368
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=55.15 E-value=95 Score=25.52 Aligned_cols=74 Identities=12% Similarity=-0.031 Sum_probs=49.5
Q ss_pred hhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH
Q 015150 63 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE 139 (412)
Q Consensus 63 ~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 139 (412)
..+.+++......++.+.-.|..++-. ......+.....++++.+...++|.+.-|+++.-.+|..++++.++.
T Consensus 115 ~~~~li~~~~a~~~~~~~w~rraaiv~---~l~~~k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~~e~ 188 (222)
T COG4912 115 LWPDLIEEWAADAEEDNRWERRAAIVH---QLVYKKKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKHSNEL 188 (222)
T ss_pred cCHHHHHHHHhccccchHHHHHHHHHH---HHHHhcCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhhchHH
Confidence 345566666444444444444443332 22334455555689999999999999999999999999999965443
No 369
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.80 E-value=94 Score=25.44 Aligned_cols=88 Identities=22% Similarity=0.221 Sum_probs=62.7
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc---hH
Q 015150 299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---QS 373 (412)
Q Consensus 299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~---~~ 373 (412)
..++|.+.+-+.+.+...|--+-+-+..+....|.+ ...+.++..+-..|...+.+|...++++|..+.-..+ ..
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~a 192 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAA 192 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchh
Confidence 357788888777777666766766666666555544 4566777778888888899999999999998865443 32
Q ss_pred --HHHhhHHHHHHhh
Q 015150 374 --VVEKSIRPCLVEL 386 (412)
Q Consensus 374 --~~~~~i~~~l~~l 386 (412)
.|.-+++|.+...
T Consensus 193 LVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 193 LVPFYRQLLPVLNTF 207 (262)
T ss_pred hhhHHHHhhhhhhhh
Confidence 3556677766553
No 370
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=53.71 E-value=1e+02 Score=23.92 Aligned_cols=109 Identities=9% Similarity=0.088 Sum_probs=57.5
Q ss_pred HHHHHHhhcccC------hHHHHHHHHHHHHHHHh--hchhhHHhhHHHHHHHHhcCC--CchHHHHHHHHhhHHHhhhC
Q 015150 185 LPIFLSLLKDEF------PDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLG 254 (412)
Q Consensus 185 ~~~l~~~l~d~~------~~vr~~~~~~l~~i~~~--~~~~~~~~~~~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~ 254 (412)
++.+.+++.+.. .++-.-++.++..+.+. ++-+.+.+.++..+..+.+.+ +..+...++..+..++....
T Consensus 13 l~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~ 92 (160)
T PF11841_consen 13 LTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSP 92 (160)
T ss_pred HHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCH
Confidence 445555555433 24444455555555543 123333444455555444432 45666666666666654321
Q ss_pred h---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC
Q 015150 255 V---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 293 (412)
Q Consensus 255 ~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 293 (412)
. ....+.-.+-++..|++.+.+++..|+..+..+...-+
T Consensus 93 ~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 93 KLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 1 11112234556677777888888888777766665443
No 371
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.51 E-value=84 Score=28.11 Aligned_cols=63 Identities=16% Similarity=0.073 Sum_probs=46.0
Q ss_pred HHHHHhccCCchHHHHHHHHhHHHHhhccC-chhhhhhhHHHHHhhccCCChHHHHHHHHHHHH
Q 015150 30 SIFEELTQDDQDSVRLLAVEGCGALGKLLE-PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 92 (412)
Q Consensus 30 ~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~ 92 (412)
..+..+.++.+..-|..++..++-....-+ .........+++..++.|+++.+|..++.+|+.
T Consensus 10 ~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 10 QDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQ 73 (364)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHh
Confidence 344556777777777777766665554444 334556688888899999999999999999975
No 372
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=52.54 E-value=44 Score=24.30 Aligned_cols=31 Identities=6% Similarity=0.046 Sum_probs=19.4
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q 015150 299 QHIVPQVLEMINNPHYLYRMTILQAISLLAP 329 (412)
Q Consensus 299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~ 329 (412)
.=.++.+.+-+.|++..+..+|+..+...+.
T Consensus 7 ~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 7 DWGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3445566666666666666666666666553
No 373
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=52.26 E-value=3.2e+02 Score=29.16 Aligned_cols=167 Identities=13% Similarity=0.007 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCC-CcccchHHHHHHhcCCChH
Q 015150 41 DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRSDVVPAYVRLLRDNEA 119 (412)
Q Consensus 41 ~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~ 119 (412)
......+-.+|.++.....+ ++.-....|-..++.|.......+.++....+.. .....++....-.+.|++.
T Consensus 484 ~~~~~lgr~AL~nLL~~N~d------Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~ 557 (1120)
T PF14228_consen 484 HARHSLGRRALKNLLEHNPD------LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESS 557 (1120)
T ss_pred hHHHHHHHHHHHHHHHhhHH------HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcH
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHH
Q 015150 120 EVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDV 199 (412)
Q Consensus 120 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 199 (412)
+||..|+..|..+-........... ...+...+.++.+.+-..+..-+..-.....++.....+...+...++.-++.-
T Consensus 558 eIR~~A~qLL~~Le~R~~~~s~~~~-~~~f~~si~s~l~~vYk~aQ~eLS~~LA~~hPELs~~ifSEi~~R~~~~~~~~~ 636 (1120)
T PF14228_consen 558 EIRSKAMQLLRALEERFFSSSGSEK-SGDFRESISSKLPAVYKKAQFELSKRLAKQHPELSFPIFSEISQRFFNAVPPDA 636 (1120)
T ss_pred HHHHHHHHHHHHHHHHhhccccccc-ccceehhccCCcHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhcCChhH
Q ss_pred HHHHHHHHHHHHHhh
Q 015150 200 RLNIISKLDQVNQVI 214 (412)
Q Consensus 200 r~~~~~~l~~i~~~~ 214 (412)
|...+..|--..+.+
T Consensus 637 rr~mL~~LlPWvqnl 651 (1120)
T PF14228_consen 637 RRDMLAYLLPWVQNL 651 (1120)
T ss_pred HHHHHHHHHHHHhhc
No 374
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.01 E-value=2.1e+02 Score=26.87 Aligned_cols=105 Identities=13% Similarity=0.104 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC--
Q 015150 24 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-- 99 (412)
Q Consensus 24 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~-- 99 (412)
....+..++.+.++-.+.+.-......+..+.-+-.. +-....++..+.++..-..+..|...++.+-++.-..+.
T Consensus 301 rrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~ 380 (791)
T KOG1222|consen 301 RRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRP 380 (791)
T ss_pred HHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccH
Confidence 3444556666666555544444444444444333211 122334777778888778888999999888777644332
Q ss_pred CCcccchHHHHHHhcCCChHHHHHHHHHHHH
Q 015150 100 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVT 130 (412)
Q Consensus 100 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 130 (412)
.....-++|.+..++.+... ...|+..+.
T Consensus 381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lY 409 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDTK--HGIALNMLY 409 (791)
T ss_pred HHhhccchHHHHHHhCCccc--chhhhhhhh
Confidence 22334578999888887543 334444444
No 375
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=51.17 E-value=1.2e+02 Score=23.76 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh--hhhhhHHHHHh-hhcCC--chHHHHHHHHHHHHhcc
Q 015150 259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLE-MINNP--HYLYRMTILQAISLLAP 329 (412)
Q Consensus 259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~-~~~~~--~~~~r~~~~~~l~~l~~ 329 (412)
.+.+.+.+.+.+..++..+-..+++.+..+...++... -.+.+++.+.. .+..+ ....|..+++.+..++.
T Consensus 71 k~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 71 KDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 35577777777766668888888888888887765421 12345555544 44433 24588899999998874
No 376
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=51.13 E-value=2.3e+02 Score=27.23 Aligned_cols=114 Identities=11% Similarity=0.139 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHHHHhhc-hhhH-HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCc
Q 015150 196 FPDVRLNIISKLDQVNQVIG-IDLL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK 273 (412)
Q Consensus 196 ~~~vr~~~~~~l~~i~~~~~-~~~~-~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 273 (412)
.++-|...++.+..++...- .+.+ ..-+-..+.++++..++.-+...+..+..+...+-. .+.=..+-+.++...
T Consensus 294 ~pekk~~I~~~l~~~I~~v~eKg~v~~tivHk~mlEy~~~ade~e~~e~l~ll~elv~e~vH---T~dGS~vAm~li~~a 370 (652)
T KOG2050|consen 294 APEKKASILRHLKAIITPVAEKGSVDHTIVHKLMLEYLTIADEEEKSELLELLKELVPEMVH---TRDGSRVAMKLIWHA 370 (652)
T ss_pred ChHhHHHHHHHHHHHhHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHhhC
Confidence 46666666666666654432 1222 122344566777777777777776666554433310 001112234455566
Q ss_pred hhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCC
Q 015150 274 VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 312 (412)
Q Consensus 274 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~ 312 (412)
++.=|...+.++...+..+..+.+...++-.+++...|+
T Consensus 371 ~aKeRK~IiK~~K~h~~K~A~~~yGh~vlia~ldc~DDT 409 (652)
T KOG2050|consen 371 TAKERKLIIKNMKEHVEKIANDEYGHLVLIALLDCTDDT 409 (652)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhccCceehhhhhcccchH
Confidence 777788888888887776655544444444444444443
No 377
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=50.94 E-value=2.7e+02 Score=27.90 Aligned_cols=124 Identities=14% Similarity=0.141 Sum_probs=73.4
Q ss_pred HhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhh
Q 015150 143 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 222 (412)
Q Consensus 143 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~ 222 (412)
..++..+..+..|+-+.|+..++..+..+... +......|+..+.+-+.|++.-+-..|...|..+...-+ . +.-.
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~--kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HP-n-MK~V 378 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTN--KPEQENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHP-N-MKIV 378 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCC-c-ceee
Confidence 34667777888899999999998888776533 333345677888888888877777777777776654322 1 1112
Q ss_pred HHHHHHHHhcCC--CchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHh
Q 015150 223 LLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 270 (412)
Q Consensus 223 ~~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 270 (412)
++..+.+++--+ +.+..+.++..|.++.-.-....+...++.+++.++
T Consensus 379 vi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lF 428 (988)
T KOG2038|consen 379 VIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLF 428 (988)
T ss_pred hHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHH
Confidence 344444443333 344445555556555544333334444555554443
No 378
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=50.70 E-value=3.2e+02 Score=28.71 Aligned_cols=84 Identities=19% Similarity=0.110 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHH----hhh-hchH---HHHhhHHHHHHh
Q 015150 314 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL----IPI-VDQS---VVEKSIRPCLVE 385 (412)
Q Consensus 314 ~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l----~~~-~~~~---~~~~~i~~~l~~ 385 (412)
-.+|.++......+....+.......+++.+. .|+.|-+|...+..+..- ... .+.. .-...-.+.+..
T Consensus 882 vd~r~~a~~~~v~~~~~~~~~~~l~~~leil~---~~~dp~~R~~i~~ml~~~~np~~~~~~~s~~~~~~~~~~~~~~~~ 958 (1180)
T KOG1932|consen 882 VDVRICAEELNVDLGGVDGSPDDLAYILEILE---NDPDPVIRHKILDMLSQSNNPVTKGGTESDLLKEALVERLWKLKN 958 (1180)
T ss_pred hhhHHHhhhhhhhhcccCCChHHHHHHhhhcc---cCcchHHHHHHHHHhhccCCceeeccccCccccHHHHHhhhhhhc
Confidence 46888888888777655443333334443333 578888999999888772 111 1111 122344555555
Q ss_pred hcCCCCccHHHHHHH
Q 015150 386 LSEDPDVDVRFFATQ 400 (412)
Q Consensus 386 l~~d~~~~vr~~a~~ 400 (412)
..+.+|...|.-+..
T Consensus 959 ~~k~~D~~~r~~v~d 973 (1180)
T KOG1932|consen 959 LSKEPDICSRSSVLD 973 (1180)
T ss_pred cCCCCCeEeEeehhh
Confidence 556666665554333
No 379
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=49.58 E-value=84 Score=21.66 Aligned_cols=57 Identities=16% Similarity=0.136 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150 315 LYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 372 (412)
Q Consensus 315 ~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 372 (412)
..|-+++..|+.+...++-+ .+.+.++..|....+| ...++.++-++++.+-..-.+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D 62 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcc
Confidence 45778888899988777654 4677777788877786 567999999999999776544
No 380
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.51 E-value=2.3e+02 Score=26.74 Aligned_cols=107 Identities=8% Similarity=0.074 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC----
Q 015150 23 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---- 98 (412)
Q Consensus 23 ~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~---- 98 (412)
.+..++..++..-...=.+..|...+.+|..+-..- -.....++.++..+..-++...|..+-..+....+.+.
T Consensus 16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~--~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~k 93 (616)
T KOG2229|consen 16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKN--LIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHK 93 (616)
T ss_pred hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC--cCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcc
Confidence 345567777666666667889998888876665431 11233577777777666667778877666655555333
Q ss_pred CCCcccchHHHHHHhcCCChHHHHHHHHHHHHH
Q 015150 99 PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTK 131 (412)
Q Consensus 99 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 131 (412)
++..-..+-.++..++.++++.--..|+..+..
T Consensus 94 n~klnkslq~~~fsml~~~d~~~ak~a~~~~~e 126 (616)
T KOG2229|consen 94 NDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIE 126 (616)
T ss_pred cchHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 222223456667788888887543444444433
No 381
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=47.22 E-value=3.2e+02 Score=27.71 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhhCH--HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh--HH--HHhhHHHHHHhhccc
Q 015150 122 RIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--AT--IEQLLPIFLSLLKDE 195 (412)
Q Consensus 122 r~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~--~~~l~~~l~~~l~d~ 195 (412)
-..|++++.++..++.+ ..|.+.++..+.+++.+.+++++..+++++..++..-++. .. .+.+++.|.+++...
T Consensus 73 v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~ 152 (819)
T KOG1877|consen 73 VKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHER 152 (819)
T ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcc
Confidence 34555555555555433 3566778888888998889999999999999988654332 11 256777787776542
Q ss_pred -----ChHHHHHHHHHHHHHHHh
Q 015150 196 -----FPDVRLNIISKLDQVNQV 213 (412)
Q Consensus 196 -----~~~vr~~~~~~l~~i~~~ 213 (412)
...+|.+.+++|..+...
T Consensus 153 ~~~~~~~~lr~agl~gLsa~v~~ 175 (819)
T KOG1877|consen 153 GDDDMKDCLRAAGLQGLSAVVWL 175 (819)
T ss_pred cchhhhhhccHhhhhhHHHHHHH
Confidence 245677777777766543
No 382
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=47.03 E-value=1.9e+02 Score=29.39 Aligned_cols=180 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC------C----CCcccchHHHHHHhcCCC
Q 015150 48 VEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG------P----EPTRSDVVPAYVRLLRDN 117 (412)
Q Consensus 48 ~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~------~----~~~~~~l~~~l~~~l~d~ 117 (412)
+..+..+....+.......++.++..+++-+.-+-+..-+.++..+...+. . .....+++.++..++.+.
T Consensus 123 l~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea 202 (802)
T PF13764_consen 123 LSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEA 202 (802)
T ss_pred HHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhc----
Q 015150 118 EAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK---- 193 (412)
Q Consensus 118 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---- 193 (412)
+.................-........++..+.......++.+....+..++.++ +|.+..++.|+.+|...++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt--~G~~e~m~~Lv~~F~p~l~f~~~ 280 (802)
T PF13764_consen 203 NSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLT--YGNEEKMDALVEHFKPYLDFDKF 280 (802)
T ss_pred hhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHh--cCCHHHHHHHHHHHHHhcChhhc
Q ss_pred -ccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHH
Q 015150 194 -DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 229 (412)
Q Consensus 194 -d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~ 229 (412)
+....--...+.++..+...+..+..-..+-..+.+
T Consensus 281 D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~ 317 (802)
T PF13764_consen 281 DEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE 317 (802)
T ss_pred ccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
No 383
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=46.91 E-value=43 Score=18.35 Aligned_cols=28 Identities=32% Similarity=0.197 Sum_probs=20.7
Q ss_pred HHHHHHh-hcCCCCccHHHHHHHHHHHhH
Q 015150 379 IRPCLVE-LSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 379 i~~~l~~-l~~d~~~~vr~~a~~al~~~~ 406 (412)
+...|+. ..+|+|.-||.+|..++..+-
T Consensus 6 l~r~Lk~V~~~D~D~lvr~hA~~~Le~Le 34 (36)
T PF10304_consen 6 LYRTLKYVESTDNDDLVREHAQDALEELE 34 (36)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHh
Confidence 3444444 358899999999999998764
No 384
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=46.12 E-value=2.9e+02 Score=26.83 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=42.0
Q ss_pred HHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh-chHHHHhhHHHHHHh
Q 015150 323 AISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-DQSVVEKSIRPCLVE 385 (412)
Q Consensus 323 ~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~-~~~~~~~~i~~~l~~ 385 (412)
++..+.-.++...-...++..+..+.-+.+++||..+..+|..++... ........+...+.+
T Consensus 455 ~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p~~~~vi~~Fa~Fif~ 518 (552)
T PF14222_consen 455 CIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKPNRQQVITGFARFIFR 518 (552)
T ss_pred HHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHee
Confidence 333333334444445788899999999999999999999999998876 443333333333333
No 385
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=46.04 E-value=38 Score=24.61 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=29.3
Q ss_pred HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150 335 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 335 ~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~ 368 (412)
.+....++.++.-+.|++++|+..|++.|...+.
T Consensus 4 ~f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 4 DFEDWGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 4667788999999999999999999999988875
No 386
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=43.53 E-value=2.3e+02 Score=25.00 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=13.0
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHH
Q 015150 70 VIVNFSQDKSWRVRYMVANQLYELC 94 (412)
Q Consensus 70 ~l~~l~~d~~~~vR~~~~~~l~~l~ 94 (412)
.+.++++.=++..|.-|++++..+.
T Consensus 153 yLgkl~Q~i~~lTrlfav~cl~~l~ 177 (432)
T COG5231 153 YLGKLSQLIDFLTRLFAVSCLSNLE 177 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3334444444555666666665554
No 387
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=43.18 E-value=1.2e+02 Score=21.48 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh---hhhhHHHHHhhhc
Q 015150 260 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVLEMIN 310 (412)
Q Consensus 260 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~~~ 310 (412)
+.++..+...+.+-.++||..++..|.-+++..+.... ...+++.+..++.
T Consensus 10 ~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 10 PLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 44555566667788888888888888888887765511 1245555555444
No 388
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=43.08 E-value=64 Score=18.86 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=20.3
Q ss_pred HhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh
Q 015150 338 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 369 (412)
Q Consensus 338 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 369 (412)
+++-..+++++..+.++.|...+.+++.+.+.
T Consensus 6 eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 6 EYLKNVLLQFLESREPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHTTSS---HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHCC
Confidence 44556677777777788888888888877653
No 389
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.49 E-value=1.6e+02 Score=27.53 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=57.0
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhH
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 185 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 185 (412)
+..++.++..+..+++--.-++.|..++.+..++ .......++.++......+|..++..+..+... ...+...++
T Consensus 8 l~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee--~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~r--s~~FR~lii 83 (661)
T KOG2374|consen 8 LIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEE--VRLSSQTLMELMRHNHSQVRYLTLQIIDELFMR--SKLFRTLII 83 (661)
T ss_pred HHHHHHHHhhcCCcccChHHHHHHHHHHhccHHH--HHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence 4445555555555555555556666655554443 233445555566666667777777766665421 122222333
Q ss_pred HHHHHhhc-----cc----------ChHHHHHHHHHHHHHHHhhch
Q 015150 186 PIFLSLLK-----DE----------FPDVRLNIISKLDQVNQVIGI 216 (412)
Q Consensus 186 ~~l~~~l~-----d~----------~~~vr~~~~~~l~~i~~~~~~ 216 (412)
.-+..+|. ++ ...+|..++..+..+...+|.
T Consensus 84 ~n~~efLeL~~gt~p~~PLP~p~~~a~~Lr~~ai~~~e~Wnekfg~ 129 (661)
T KOG2374|consen 84 ENLDEFLELSIGTRPNLPLPAPPAVATTLRSKAIEFLEKWNEKFGF 129 (661)
T ss_pred hCHHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhH
Confidence 32222221 11 245788888888887766553
No 390
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=42.17 E-value=2.2e+02 Score=24.31 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=46.4
Q ss_pred cCCchHHHHHHHHhHHHHhhccCchh----hhh-hhHHHHHhhccCC---ChHHHHHHHHHHHHHHHHhCCCC----ccc
Q 015150 37 QDDQDSVRLLAVEGCGALGKLLEPQD----CVA-HILPVIVNFSQDK---SWRVRYMVANQLYELCEAVGPEP----TRS 104 (412)
Q Consensus 37 ~~~~~~~r~~a~~~l~~i~~~~~~~~----~~~-~l~~~l~~l~~d~---~~~vR~~~~~~l~~l~~~~~~~~----~~~ 104 (412)
.+..+..+..+++++.++...-.... ... .++..+....... +..+|.+++..+-+++-...... ...
T Consensus 120 ~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~ 199 (268)
T PF08324_consen 120 SSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQS 199 (268)
T ss_dssp TTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHH
T ss_pred CCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 34455566667777776665432211 111 3444444433333 56666666666666554332111 122
Q ss_pred chHHHHHHhc-CC-ChHHHHHHHHHHHHHHH
Q 015150 105 DVVPAYVRLL-RD-NEAEVRIAAAGKVTKIC 133 (412)
Q Consensus 105 ~l~~~l~~~l-~d-~~~~vr~~a~~~l~~l~ 133 (412)
+++..+.+.+ .. .++++...++-++|.+.
T Consensus 200 ~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 200 ELLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 3444454422 11 34555555555666554
No 391
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=41.98 E-value=3.8e+02 Score=28.61 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcc----cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHH
Q 015150 155 DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 230 (412)
Q Consensus 155 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~ 230 (412)
-++.+||..|++.++.+... ..-..+|.+.+.++- +++-+|.-.-+++..+ .+...+.-.+.+.
T Consensus 901 fPDqeVR~~AVqwi~~ls~D-----eL~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl-------~~ah~lYWlLk~~ 968 (1639)
T KOG0905|consen 901 FPDQEVRAHAVQWIARLSND-----ELLDYLPQLVQALKFELYLKSALVQFLLSRSLVSL-------QFAHELYWLLKDA 968 (1639)
T ss_pred CCcHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcch-------HHHHHHHHHHhhc
Confidence 46788888888888877631 122345656555542 3455555444444433 1224566667777
Q ss_pred hcCCCchHHHHHHHHhhHHHhhhCh
Q 015150 231 AEDRHWRVRLAIIEYIPLLASQLGV 255 (412)
Q Consensus 231 ~~d~~~~vr~~~~~~l~~l~~~~~~ 255 (412)
+.|....+|+. ..++.+....|+
T Consensus 969 l~d~qfs~rYq--~ll~aLl~~~gk 991 (1639)
T KOG0905|consen 969 LDDSQFSLRYQ--NLLAALLDCCGK 991 (1639)
T ss_pred cccceeehHHH--HHHHHHHHHhCH
Confidence 77766666662 334444444454
No 392
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=41.87 E-value=3.2e+02 Score=26.19 Aligned_cols=84 Identities=12% Similarity=0.056 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHH
Q 015150 282 ANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAK 361 (412)
Q Consensus 282 ~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~ 361 (412)
+..|+--.-.+|.+.-.+.++-.+-..+.-.+..+|...--+.+.+...-+ .-.++..+.....|...+|-..++-
T Consensus 623 ~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnP----Qm~vfDtL~r~shd~dl~v~~ntIf 698 (881)
T COG5110 623 LALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNP----QMNVFDTLERSSHDGDLNVIINTIF 698 (881)
T ss_pred HHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCc----chHHHHHHHHhccccchhHHHHHHH
Confidence 333444444566665556666666666666677888888788777764333 2357778888889999999988888
Q ss_pred HHHHHhhh
Q 015150 362 VLQSLIPI 369 (412)
Q Consensus 362 ~l~~l~~~ 369 (412)
++|.+...
T Consensus 699 amGLiGAG 706 (881)
T COG5110 699 AMGLIGAG 706 (881)
T ss_pred HhhccccC
Confidence 88877543
No 393
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=41.03 E-value=3e+02 Score=29.01 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=65.4
Q ss_pred HhhhChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhC--hhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHH
Q 015150 250 ASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFG--PDWAMQHIVPQVLEMINNPHYLYRMTILQAISL 326 (412)
Q Consensus 250 ~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~ 326 (412)
+..+|.+...-...+.+...+. ..++.+..-++..+..+..+-. .+......+..++.++.+ .+..|+.+++.+-.
T Consensus 1760 asvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYA 1838 (2235)
T KOG1789|consen 1760 ASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYA 1838 (2235)
T ss_pred hhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHH
Confidence 3344444332224455555554 4456677777776655443211 111123355556665543 46789999999988
Q ss_pred hccc--cchhHHHH-hhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150 327 LAPV--MGSEITCS-QLLPVVINASKDRVPNIKFNVAKVLQSLI 367 (412)
Q Consensus 327 l~~~--~~~~~~~~-~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 367 (412)
++.. ++.+.... .++-.+--++....+.+|.+++..++++.
T Consensus 1839 L~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1839 LSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 8643 22222111 12222333456778999999999999885
No 394
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=40.91 E-value=3.6e+02 Score=26.43 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHhccccch
Q 015150 314 YLYRMTILQAISLLAPVMGS 333 (412)
Q Consensus 314 ~~~r~~~~~~l~~l~~~~~~ 333 (412)
+..|..+++.|..++...|.
T Consensus 442 ~PLRlhcir~Li~Ls~ssg~ 461 (661)
T KOG2256|consen 442 YPLRLHCIRSLISLSRSSGT 461 (661)
T ss_pred hhHHHHHHHHHHHHHhhcCc
Confidence 67899999999999876664
No 395
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=40.80 E-value=2.2e+02 Score=29.81 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=37.1
Q ss_pred hcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhccc
Q 015150 270 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPV 330 (412)
Q Consensus 270 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~ 330 (412)
-.|.+..-+..|+..+..+-...+ -..|...+.|.. |++|.+|+.+|...+..
T Consensus 652 r~drDVvAQ~EAI~~le~~p~~~s--------~~~L~rtl~der~FyrIR~~Aa~aLak~a~~ 706 (1180)
T KOG1932|consen 652 RQDRDVVAQMEAIESLEALPSTAS--------RSALTRTLEDERYFYRIRIAAAFALAKTANG 706 (1180)
T ss_pred HhcccHHHHHHHHHHHHcCCcchh--------HHHHHHHHhhcchhhHHHHHHHHHHHHhhcc
Confidence 367777778888887766543221 145556666655 89999999999988654
No 396
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.79 E-value=4.1e+02 Score=27.09 Aligned_cols=63 Identities=11% Similarity=0.082 Sum_probs=25.9
Q ss_pred hcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC
Q 015150 192 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 254 (412)
Q Consensus 192 l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 254 (412)
..+.+...|....+...+-.+.+.+-.....++..+.......|+.-|..++..++.+...++
T Consensus 72 F~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip 134 (970)
T KOG1988|consen 72 FPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP 134 (970)
T ss_pred hccCcHHHHHHHHHHHhhccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc
Confidence 334444455544444443333322211112222333333344445555555555555554443
No 397
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.51 E-value=3e+02 Score=25.38 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=13.1
Q ss_pred HHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 382 CLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 382 ~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
.|..+++...++=-+.|.+-+.++.
T Consensus 177 lL~rLLkSn~PeDLqaANkLIK~lV 201 (594)
T KOG1086|consen 177 LLARLLKSNHPEDLQAANKLIKTLV 201 (594)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHH
Confidence 4444555555555555555555443
No 398
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=40.23 E-value=1.3e+02 Score=30.83 Aligned_cols=80 Identities=10% Similarity=0.032 Sum_probs=46.2
Q ss_pred HHHhc-CchhHHHHHHHHHHHHHHHHhChhhhhhhhHH-----HHHhhhcCCchHHHHHHHHHHHHhccccchhHHH--H
Q 015150 267 MQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP-----QVLEMINNPHYLYRMTILQAISLLAPVMGSEITC--S 338 (412)
Q Consensus 267 ~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~-----~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~--~ 338 (412)
.+..+ +....||......+..+..... ++.-++++. .+....-+.+.++|..+.+.+..++..|....+. -
T Consensus 435 ~r~~r~~s~~~Vrik~~~~l~~~~l~nr-~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~~~ll 513 (1697)
T KOG3687|consen 435 ERFFRSESRGAVRIKVLDVLSFVLLINR-QFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHFNSLL 513 (1697)
T ss_pred HHHHHhcccceEEEeeHHHHHHHHhhhh-hhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcchhHH
Confidence 33344 6666777777777766654331 222233333 2333334567899999999999998887755322 2
Q ss_pred hhHHHHHhh
Q 015150 339 QLLPVVINA 347 (412)
Q Consensus 339 ~il~~l~~~ 347 (412)
.++..+.+.
T Consensus 514 di~EA~~~r 522 (1697)
T KOG3687|consen 514 DIIEAVMAR 522 (1697)
T ss_pred HHHHHHHhc
Confidence 344444444
No 399
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=39.93 E-value=1e+02 Score=21.78 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=40.2
Q ss_pred hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCC
Q 015150 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDR 351 (412)
Q Consensus 298 ~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~ 351 (412)
.+.++..+...+.+-...+|.-++..+.-+.+.++.. ....++++.++.++.-.
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 3456666777778888899999999999888888776 34667777777776544
No 400
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=38.05 E-value=2.6e+02 Score=23.91 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHhccCC-chHHHHHHHHhHHHHhhccCchh----hhhhhHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 015150 24 LKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQD----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 95 (412)
Q Consensus 24 ~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~i~~~~~~~~----~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~ 95 (412)
+.-.+.|++....+.. -+..|..+...++.+++.-.++. ...+++|.++...+..+...|..|...+.++..
T Consensus 92 iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~ 168 (262)
T PF04078_consen 92 IPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILL 168 (262)
T ss_dssp GGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred chhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 3445677765444433 35689999999999988544432 345688998888887788788888887877764
No 401
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=37.18 E-value=1e+02 Score=21.88 Aligned_cols=56 Identities=13% Similarity=0.104 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhCCC---CcccchHHHHHHhc--CCChHHHHHHHHHHHHHHHHhhCH
Q 015150 83 RYMVANQLYELCEAVGPE---PTRSDVVPAYVRLL--RDNEAEVRIAAAGKVTKICRILNP 138 (412)
Q Consensus 83 R~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~ 138 (412)
|...++.++.++...... .....-+|.+...+ .|.+|.+|+.|+.++-.+++...+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 455556666655332211 01112356666643 577899999999999988875544
No 402
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=36.30 E-value=58 Score=21.39 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=24.6
Q ss_pred hhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh
Q 015150 339 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 370 (412)
Q Consensus 339 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 370 (412)
+-++.++.+..+.++.-|..++++|+.+....
T Consensus 39 YTi~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 39 YTIQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred cCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 45677777778888888888888888886543
No 403
>KOG1825 consensus Fry-like conserved proteins [General function prediction only]
Probab=36.13 E-value=4.7e+02 Score=29.88 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=71.4
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCC-Cccc
Q 015150 26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRS 104 (412)
Q Consensus 26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~ 104 (412)
+.+...+..+...++..+...+.+++..+.....+. ..+++.+...|-..+..+-......+.++....... ....
T Consensus 1167 e~l~~w~~~l~~s~~~tiv~L~~~~l~~LL~lN~en---~~Lf~~~i~qCys~~~tiA~~yf~~L~~v~~~~~~p~~d~~ 1243 (2206)
T KOG1825|consen 1167 EGLLGWTEALFHSGNHTIVALAKLALKNLLLLNLEN---LVLFPAVIDQCYSSSATIASGYFSVLAEVYMRQDIPKCDIQ 1243 (2206)
T ss_pred hHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcch---hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCCccccHH
Confidence 456667777788888888888999988888664332 245555554444444444444445555554444333 3446
Q ss_pred chHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 015150 105 DVVPAYVRLLRDNEAEVRIAAAGKVTKIC 133 (412)
Q Consensus 105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 133 (412)
.+++.+.-.+.|++..+|..|++.+..+-
T Consensus 1244 ~Ll~L~L~~lv~~~~~ir~~A~~lle~l~ 1272 (2206)
T KOG1825|consen 1244 RLLSLCLYKLVDNNESIRLDALQLLETLH 1272 (2206)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 78888888889999999999999998875
No 404
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.81 E-value=4.1e+02 Score=25.02 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHhccccchh
Q 015150 314 YLYRMTILQAISLLAPVMGSE 334 (412)
Q Consensus 314 ~~~r~~~~~~l~~l~~~~~~~ 334 (412)
..+|..++.++...-+.||..
T Consensus 110 ~~Lr~~ai~~~e~Wnekfg~~ 130 (661)
T KOG2374|consen 110 TTLRSKAIEFLEKWNEKFGFH 130 (661)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 468889999988887777754
No 405
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=32.98 E-value=2.8e+02 Score=22.91 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=22.8
Q ss_pred hHHHHhhHHHHHHhhcCCCCccHHHHHHHHH
Q 015150 372 QSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402 (412)
Q Consensus 372 ~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al 402 (412)
++.+...+-|.+..+...++..++....+.+
T Consensus 183 ~~~~~~ll~PF~~~~~~s~~k~l~~~i~~~V 213 (217)
T PF05997_consen 183 AEPLLLLLEPFVKLLAKSPDKVLRKRIKESV 213 (217)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 3455667777777788888888888776654
No 406
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=32.91 E-value=3.5e+02 Score=23.89 Aligned_cols=217 Identities=13% Similarity=0.209 Sum_probs=121.7
Q ss_pred HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHh-hch-hhH------HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhh
Q 015150 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV-IGI-DLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 252 (412)
Q Consensus 181 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~-~~~-~~~------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 252 (412)
...+++.+...+.+-+.+-|+.+......+... +|. ... .+.+++.+++.-.+ .+.+-..+...+ -++
T Consensus 77 ~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~ml---rEc 152 (342)
T KOG1566|consen 77 NADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNML---REC 152 (342)
T ss_pred hCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHH---HHH
Confidence 346667777777777778888777776666433 121 100 13344444444222 222222222222 222
Q ss_pred hChhhHH-----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---hhhhh---hhhHHH-HHhhhcCCchHHHHHH
Q 015150 253 LGVGFFD-----DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAM---QHIVPQ-VLEMINNPHYLYRMTI 320 (412)
Q Consensus 253 ~~~~~~~-----~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~---~~~l~~-l~~~~~~~~~~~r~~~ 320 (412)
...+.+. +.-...+..+.+-++-++-.-|++++..+..... .+++. +.+++. -..++++.++-+|.-+
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 2212111 1122334455666777788888888777765432 12221 223344 4557788999999999
Q ss_pred HHHHHHhccccchhH----HH--HhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--H------HHhhHHHHHHhh
Q 015150 321 LQAISLLAPVMGSEI----TC--SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--V------VEKSIRPCLVEL 386 (412)
Q Consensus 321 ~~~l~~l~~~~~~~~----~~--~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~------~~~~i~~~l~~l 386 (412)
...++.+...-+... |. ..-+..+..+++|+..++...|......+...-..+ . -.+.++..+...
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~f 312 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHDF 312 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHHh
Confidence 999999864333321 21 244567788899999999999988877765443221 1 124666777777
Q ss_pred cCCCCccHHHHHHHH
Q 015150 387 SEDPDVDVRFFATQA 401 (412)
Q Consensus 387 ~~d~~~~vr~~a~~a 401 (412)
-.|...|.+-...++
T Consensus 313 ~~d~~~DeqF~dEk~ 327 (342)
T KOG1566|consen 313 HTDRTEDEQFLDEKA 327 (342)
T ss_pred CCCCCchhhhhhhHH
Confidence 777766655554443
No 407
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=32.77 E-value=2e+02 Score=21.11 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=35.2
Q ss_pred HhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhc---CCCCchHHHHHHHHHHHHhhh
Q 015150 306 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS---KDRVPNIKFNVAKVLQSLIPI 369 (412)
Q Consensus 306 ~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l---~d~~~~vR~~~~~~l~~l~~~ 369 (412)
.+...+.+|......+.-+...+... .....++..+.+.+ ..+++.+...++..|..+...
T Consensus 9 ~eAT~~d~~gp~~~~l~eIa~~t~~~---~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~n 72 (125)
T PF01417_consen 9 REATSNDPWGPPGKLLAEIAQLTYNS---KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKN 72 (125)
T ss_dssp HHHTSSSSSS--HHHHHHHHHHTTSC---HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCcCHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Confidence 34445555555555555555544222 23556777777777 556677777777777777654
No 408
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=32.16 E-value=3.2e+02 Score=23.29 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=61.2
Q ss_pred CchHHHHHHHHHHHHhccc-cchhHH---HH-hhHHHHHhhcCCC---CchHHHHHHHHHHHHhhhhch----HHHHhhH
Q 015150 312 PHYLYRMTILQAISLLAPV-MGSEIT---CS-QLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVDQ----SVVEKSI 379 (412)
Q Consensus 312 ~~~~~r~~~~~~l~~l~~~-~~~~~~---~~-~il~~l~~~l~d~---~~~vR~~~~~~l~~l~~~~~~----~~~~~~i 379 (412)
.....+..+++++..+... .|...+ .. .++..+....... +.++|.+++..+-+++-.... ......+
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 5577888888888887543 333322 22 3445555444443 789999999998888644322 1223345
Q ss_pred HHHHHh-hcCC-CCccHHHHHHHHHHHhH
Q 015150 380 RPCLVE-LSED-PDVDVRFFATQALQSKD 406 (412)
Q Consensus 380 ~~~l~~-l~~d-~~~~vr~~a~~al~~~~ 406 (412)
+..+.. +... .|+|+...+.-|+|++.
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 666666 3333 78899999999999987
No 409
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=31.08 E-value=59 Score=15.98 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=6.8
Q ss_pred hHHHHHHhcCCChHHHH
Q 015150 106 VVPAYVRLLRDNEAEVR 122 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr 122 (412)
++|.+..-+++++-.+|
T Consensus 4 IVpyi~~~L~N~~LAl~ 20 (24)
T PF09268_consen 4 IVPYILNTLQNPDLALR 20 (24)
T ss_dssp HHHHHHHTT--HHHHHH
T ss_pred chhHHHhccCCHHHHHH
Confidence 44444444444444333
No 410
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=30.66 E-value=2.6e+02 Score=21.78 Aligned_cols=71 Identities=11% Similarity=0.094 Sum_probs=39.6
Q ss_pred HHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH--HHhhHHHHHHh-hcC-CC-CccHHHHHHHHHHHhHH
Q 015150 337 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVE-LSE-DP-DVDVRFFATQALQSKDQ 407 (412)
Q Consensus 337 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~i~~~l~~-l~~-d~-~~~vr~~a~~al~~~~~ 407 (412)
.+.+.|.+++.+..+.+.+=..+++.+..+...++... -.+.+++.+.. .++ +. ...-|..+.+++..+++
T Consensus 71 k~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 71 KDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 34566666666655557777777777777766655431 11233443333 322 22 23566677777776654
No 411
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=29.94 E-value=3.8e+02 Score=23.50 Aligned_cols=8 Identities=0% Similarity=0.243 Sum_probs=3.2
Q ss_pred HHhhhcCC
Q 015150 305 VLEMINNP 312 (412)
Q Consensus 305 l~~~~~~~ 312 (412)
+.++..|+
T Consensus 270 l~~l~~d~ 277 (322)
T cd07920 270 LDTLMKDQ 277 (322)
T ss_pred HHHHhCCC
Confidence 33444443
No 412
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.10 E-value=1.4e+02 Score=29.39 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=54.9
Q ss_pred hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH
Q 015150 64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE 139 (412)
Q Consensus 64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 139 (412)
...+.+.+-.+..-.|..|+..++..|...++.+..+.+ .+++|.+..++.+..+.-+...+..|.++...++..
T Consensus 674 r~DiK~sI~s~~kl~D~sV~ADvL~Iltek~eiLtLDl~-t~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt~ 748 (825)
T KOG0267|consen 674 RSDIKGSIGSLRKLADNSVQADVLNILTEKIEILTLDLC-TQLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGTV 748 (825)
T ss_pred hhhhhHHHHHHHHhhhhhHHHHHHHHHhhhhhHhhHHHH-HHHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhhh
Confidence 345666666666656677888888888888877766664 678888888888888888888888887776655543
No 413
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.87 E-value=2.6e+02 Score=27.67 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=32.2
Q ss_pred CCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh
Q 015150 234 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 294 (412)
Q Consensus 234 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 294 (412)
.+-.|+.-++..+....+.++-+. ..+++|.+-.+|.+....-+...+..|-+++..+|.
T Consensus 688 ~D~sV~ADvL~Iltek~eiLtLDl-~t~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt 747 (825)
T KOG0267|consen 688 ADNSVQADVLNILTEKIEILTLDL-CTQLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGT 747 (825)
T ss_pred hhhhHHHHHHHHHhhhhhHhhHHH-HHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhh
Confidence 334455555555555555555433 233666666666665555555555555555555554
No 414
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=27.54 E-value=4.3e+02 Score=23.33 Aligned_cols=185 Identities=10% Similarity=0.068 Sum_probs=102.7
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhhHHHhh-hChhh-------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 015150 221 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ-LGVGF-------FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 292 (412)
Q Consensus 221 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~-~~~~~-------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 292 (412)
..+++.+.+.+.+-++.-|.-+...+..+.+. .|... ..+.+++.++..-.+ .+++ |+.+=.-+.+..
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~i---aL~cg~mlrEci 153 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEI---ALTCGNMLRECI 153 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHH---HHHHHHHHHHHH
Confidence 44566677777777777777777776665442 23211 113455555554222 2222 222222222222
Q ss_pred Chhhhh-----hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccc---hhHH---HHhhHHH-HHhhcCCCCchHHHHHH
Q 015150 293 GPDWAM-----QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEIT---CSQLLPV-VINASKDRVPNIKFNVA 360 (412)
Q Consensus 293 ~~~~~~-----~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~---~~~il~~-l~~~l~d~~~~vR~~~~ 360 (412)
.-+.+. +.-+..+..+..-++..+-.-|...+..+..... .+++ .+.+.+. .-.++++.+.-.|..+.
T Consensus 154 rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~ 233 (342)
T KOG1566|consen 154 RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSL 233 (342)
T ss_pred hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHH
Confidence 111111 1122333444555666555555555554432211 1221 2234444 56677889999999999
Q ss_pred HHHHHHhhhhchHH----H--HhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150 361 KVLQSLIPIVDQSV----V--EKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409 (412)
Q Consensus 361 ~~l~~l~~~~~~~~----~--~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~ 409 (412)
+.++.+...-.+.. + ...-+..+..++.|+..+++..|-+.+..+....
T Consensus 234 kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 234 KLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 99999876443321 1 1245667788899999999999999888776654
No 415
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=26.64 E-value=4.6e+02 Score=23.30 Aligned_cols=69 Identities=22% Similarity=0.240 Sum_probs=46.4
Q ss_pred hhHHHHHhhcCCCCchHH-HHHHHHHHHHhhhhchH--H-HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 339 QLLPVVINASKDRVPNIK-FNVAKVLQSLIPIVDQS--V-VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 339 ~il~~l~~~l~d~~~~vR-~~~~~~l~~l~~~~~~~--~-~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
.++..+.++++.++++.- ..|+.=++.+....... . ..-..-..+..+++++|++||..|.+|+..+..
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 577788888888888732 23444445444433221 1 122455677788999999999999999988764
No 416
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.16 E-value=9.4e+02 Score=26.78 Aligned_cols=209 Identities=15% Similarity=0.161 Sum_probs=104.6
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch------hhhhhhHHHHHhhc
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ------DCVAHILPVIVNFS 75 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~------~~~~~l~~~l~~l~ 75 (412)
+.||.-+++|+..-. +.=|..+...+.....+.+..+-..+.+.+..+.....+. ....+.++.+....
T Consensus 1051 ~~Irelv~rC~~~ni-----kSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~ 1125 (1514)
T KOG0929|consen 1051 AEIRELVVRCISSNI-----KSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEFT 1125 (1514)
T ss_pred chhHHHHHhhhhhhh-----hhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHH
Confidence 457777777777211 2236667777777777777777777777766555433221 22334455554443
Q ss_pred cC-CChHHHHHHHHHH----HHHHHH-----hC------CCCcccchHHHH---HHhcCCChHHHHHHHHHHHHHHHHhh
Q 015150 76 QD-KSWRVRYMVANQL----YELCEA-----VG------PEPTRSDVVPAY---VRLLRDNEAEVRIAAAGKVTKICRIL 136 (412)
Q Consensus 76 ~d-~~~~vR~~~~~~l----~~l~~~-----~~------~~~~~~~l~~~l---~~~l~d~~~~vr~~a~~~l~~l~~~~ 136 (412)
.+ ..+..-..+++.+ .++.+. +. .+......+|.+ ...+.+....||..+++.+-.+....
T Consensus 1126 ~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~ 1205 (1514)
T KOG0929|consen 1126 KNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEH 1205 (1514)
T ss_pred HhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhh
Confidence 32 1111122222211 122221 11 011112234444 44566889999999999998887665
Q ss_pred CHH---HH----HHhhhhhHHHhccC-----CcHHHHHHHHHHHHhcCcccChhH-HHHhhHHHH----HHhhcccChHH
Q 015150 137 NPE---LA----IQHILPCVKELSSD-----SSQHVRSALATVIMGMAPILGKDA-TIEQLLPIF----LSLLKDEFPDV 199 (412)
Q Consensus 137 ~~~---~~----~~~~~~~l~~~~~d-----~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l----~~~l~d~~~~v 199 (412)
+.+ .+ ...++|++-..-.+ .+.+.......++..++..+..-. ....++|.+ ..+++.++..+
T Consensus 1206 g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~n~~l 1285 (1514)
T KOG0929|consen 1206 GDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIKQDNQQL 1285 (1514)
T ss_pred hhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 543 12 22455555433222 122344444444444443332110 112344443 44455566666
Q ss_pred HHHHHHHHHHHHHhhc
Q 015150 200 RLNIISKLDQVNQVIG 215 (412)
Q Consensus 200 r~~~~~~l~~i~~~~~ 215 (412)
-.....+|..+....|
T Consensus 1286 a~~g~~cl~~l~~~n~ 1301 (1514)
T KOG0929|consen 1286 ARIGTSCLLQLVSSNG 1301 (1514)
T ss_pred HHhHHHHHHHHHHhcc
Confidence 6667778877766655
No 417
>PF14961 BROMI: Broad-minded protein
Probab=24.98 E-value=3.9e+02 Score=28.57 Aligned_cols=54 Identities=20% Similarity=0.197 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhc--cccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150 314 YLYRMTILQAISLLA--PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 314 ~~~r~~~~~~l~~l~--~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~ 368 (412)
..+|..|++.|..+. +.++.+ .++.+...+...|.|+++.+...+++...++..
T Consensus 176 ~evR~eAlq~Lc~~p~SDVls~E-~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fs 231 (1296)
T PF14961_consen 176 KEVRLEALQILCSAPPSDVLSCE-SWSVLRENLTDALSDPDPEISDASLRFHAKMFS 231 (1296)
T ss_pred hHHHHHHHHHHhcCChhhccccc-cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 345555555554442 122222 344555555555666666666666555555543
No 418
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=24.69 E-value=1.4e+02 Score=18.13 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=17.9
Q ss_pred hhhhHHHHHhhccCCChHHHHHHHHHHHHH
Q 015150 64 VAHILPVIVNFSQDKSWRVRYMVANQLYEL 93 (412)
Q Consensus 64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l 93 (412)
.+.+..++.+....=++..|...+++|.-+
T Consensus 17 p~~L~~lL~~~~~~L~p~lR~~lv~aLiLL 46 (52)
T PF08158_consen 17 PQELIDLLRNHHTVLDPDLRMKLVKALILL 46 (52)
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 344555555555555677777777776544
No 419
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=24.68 E-value=2.6e+02 Score=19.72 Aligned_cols=27 Identities=22% Similarity=0.106 Sum_probs=11.1
Q ss_pred hHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150 340 LLPVVINASKDRVPNIKFNVAKVLQSL 366 (412)
Q Consensus 340 il~~l~~~l~d~~~~vR~~~~~~l~~l 366 (412)
++..++.+++.+.+.....++..+..+
T Consensus 31 Ll~~LleWFnf~~~~~~~~VL~Ll~~L 57 (98)
T PF14726_consen 31 LLKQLLEWFNFPPVPMKEEVLALLLRL 57 (98)
T ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHH
Confidence 333444444444333444444444443
No 420
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=24.34 E-value=2.5e+02 Score=21.81 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHHHHhhhhc
Q 015150 349 KDRVPNIKFNVAKVLQSLIPIVD 371 (412)
Q Consensus 349 ~d~~~~vR~~~~~~l~~l~~~~~ 371 (412)
.|..|+|+.+++..++-+.+..|
T Consensus 87 ~D~rPSVKLA~iSLlSiIiek~~ 109 (180)
T PHA02855 87 NDNRPSVKLAIISLISMIAEKKG 109 (180)
T ss_pred hcCCchhHHHHHHHHHHHHHHhc
Confidence 56666666666666666665544
No 421
>KOG3534 consensus p53 inducible protein PIR121 [General function prediction only]
Probab=24.05 E-value=3.4e+02 Score=26.83 Aligned_cols=76 Identities=18% Similarity=0.320 Sum_probs=49.3
Q ss_pred CHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcc--cChHHHHHHHHHHHHHHH
Q 015150 137 NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQ 212 (412)
Q Consensus 137 ~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~~~~~l~~i~~ 212 (412)
|-...++.++..+..++++.--..-....+.+..++.....+.-...++..+...++| +.++.+....+.+-.++.
T Consensus 920 GIAVvmdelLKivk~Llqg~ilq~vktl~~~MPKiCkLPR~eYGSpgiL~yy~h~L~div~Y~elKte~fQ~lRE~GN 997 (1253)
T KOG3534|consen 920 GIAVVMDELLKIVKSLLQGTILQYVKTLMEVMPKICKLPRHEYGSPGILEYYHHHLKDIVEYPELKTEFFQSLREVGN 997 (1253)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCCccccCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Confidence 3345566677777777877666556667788888886655544455677777777766 356666666666655543
No 422
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=23.64 E-value=2.8e+02 Score=19.82 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=42.7
Q ss_pred HHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH---HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 337 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 337 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
...+...+.+.+....+.-|..++-.+..+.+..+.. .+...+.+.+.......++++|....+.++.+-
T Consensus 35 a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW~ 107 (114)
T cd03562 35 AKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIWE 107 (114)
T ss_pred HHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 3455555555555556666777777777776665442 233444555555556677778877777766654
No 423
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=23.60 E-value=3.7e+02 Score=21.25 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=29.4
Q ss_pred CCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhccCC
Q 015150 99 PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDS 156 (412)
Q Consensus 99 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~ 156 (412)
.+..+.++...+....+. ++ ..|+..+..+...+..+ ++.+.+.|.+.+.+.++
T Consensus 40 ~~~~W~eL~d~Ils~~~~-e~---~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p 96 (174)
T PF04510_consen 40 QEGGWDELSDCILSLSEN-EP---VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPP 96 (174)
T ss_pred CCCCchhHHHHHHHhhcc-ch---HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCc
Confidence 445567777776665432 22 44555555554222222 44556777777766655
No 424
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=23.52 E-value=1e+03 Score=26.18 Aligned_cols=344 Identities=15% Similarity=0.124 Sum_probs=156.8
Q ss_pred HHHHHHHhccCCchHHHHHHHHhHHHHhhc-cCchhhhhhhHHHHHhh-ccC---CChHHHHHHHHHHHHHHHHhCCCCc
Q 015150 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKL-LEPQDCVAHILPVIVNF-SQD---KSWRVRYMVANQLYELCEAVGPEPT 102 (412)
Q Consensus 28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~-~~~~~~~~~l~~~l~~l-~~d---~~~~vR~~~~~~l~~l~~~~~~~~~ 102 (412)
.++++...+...++.+-..+++.+..+.+. ++..+....+.-..... ..+ .+...-..+..++..+....+....
T Consensus 808 Fv~~l~d~l~~~~e~V~~~tLr~l~~l~~~~L~~~~~~s~lF~~~~~~~~~gs~~~~~el~q~~~k~~t~lI~~~~s~~i 887 (1364)
T KOG1823|consen 808 FVSILCDSLLSIREKVITSTLRNLIDLLRHQLDQIESVSELFKLLARKRHSGSPSTNFELCQDSFKGFTALIAQVGSVKI 887 (1364)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHhcceee
Confidence 445555566677788888888888887774 44444445533322221 112 2345566677777888888887776
Q ss_pred ccchHHHHHHhcC-CChHHHHHHHH-HHHHHHHH-hhCHHHHHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcCccc-Ch
Q 015150 103 RSDVVPAYVRLLR-DNEAEVRIAAA-GKVTKICR-ILNPELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPIL-GK 177 (412)
Q Consensus 103 ~~~l~~~l~~~l~-d~~~~vr~~a~-~~l~~l~~-~~~~~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~-~~ 177 (412)
..+.+..+....+ |-.+.-|.+.+ ..+.++.. .+.-.. ...++..+.+.+ .......|..+-+.+-...... ..
T Consensus 888 ~e~~ls~ll~~~~sD~~d~~rq~~~F~l~kAl~~r~i~~~e-L~~imd~v~e~~v~~~~~~~r~qcre~~~~~~~s~s~~ 966 (1364)
T KOG1823|consen 888 KEDVLSYLLARVESDISDPSRQGLAFSLLKALVSRKIMLPE-LYEIMDKVRETMVRNHSKEIRLQCREVFYSFLGSKSKL 966 (1364)
T ss_pred eHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhcchh
Confidence 6777777666543 33333444443 34443332 221111 122334443332 2233333333333222111100 01
Q ss_pred hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh
Q 015150 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 257 (412)
Q Consensus 178 ~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 257 (412)
....+..+..+.--...+...+|....-.. +......+|...-..+|..+..|..+...+..+......+.
T Consensus 967 ~k~~~~~V~~l~~~~esg~esvr~~~all~---------e~~~~ffIal~~~~~nDd~~~~r~ma~~~i~~~~~~~d~e~ 1037 (1364)
T KOG1823|consen 967 EKQMEFMVDNLLYEVESGRESVRFSPALLF---------EILSNFFIALVLVKINDDEPVCREMASMLIKVLYDKEDNEL 1037 (1364)
T ss_pred hHHHHHHHHHhhhhhhcccchhcccHHHHH---------HHhhccchhhcccccccchHHHHHHHHHHHHHHhCHhhhHH
Confidence 111122222222222233445551111111 11112334444444567777777777666555444333221
Q ss_pred HHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhhh--hhhHH-------------HHHhhhcCCchHHHHHHH
Q 015150 258 FDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAM--QHIVP-------------QVLEMINNPHYLYRMTIL 321 (412)
Q Consensus 258 ~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~l~-------------~l~~~~~~~~~~~r~~~~ 321 (412)
.+.+...+..... +... =|...+...+...+.+|.+... ..+++ ...+.-.+..|......+
T Consensus 1038 -~~~~~~~l~~~~~~~~~~-~~~~~v~~~~~~~~~~~~e~~~~~~~~~~~lek~~~~~~s~~~~~~~~~~~~~~~lfs~l 1115 (1364)
T KOG1823|consen 1038 -FNLLERLLHEWVGVHKRH-KRFILVGATGKAEESIGFELTIQLFVLLSVLEKEIIVEVSDPIEAETEEVLFDKVLFSWL 1115 (1364)
T ss_pred -HhHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHhHHHHHHHhhccceeeeecccccccHHHHHHHHHhhHHHHHHHH
Confidence 1112222222221 2222 2223355555555555543211 01111 111111122233333333
Q ss_pred HHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH-HHHhhHHHHHHhhc
Q 015150 322 QAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELS 387 (412)
Q Consensus 322 ~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~i~~~l~~l~ 387 (412)
..........| ..++...+...+.-+...||.+++...+.+....+.. .....+.+.+...+
T Consensus 1116 t~~t~~ikk~~----f~ki~~~v~~~~l~~~~~v~~s~~~lf~~l~a~~~~~e~~~~~i~~~ll~~L 1178 (1364)
T KOG1823|consen 1116 TLVTENIKKGG----FSKIWSRVVGLLLMPHSWVRLSRAQLFGFLFAISDVSELRLRTIIPLLLAHL 1178 (1364)
T ss_pred HHHHHHHHhcc----HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhcccHHHHHHHHhHHHHHHhC
Confidence 33333333332 3456666667777788889988888888876655443 33345666665543
No 425
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=23.11 E-value=3e+02 Score=19.91 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=34.8
Q ss_pred hHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHH----hhcCCCCchHHHHHHHHHHHHhh
Q 015150 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVI----NASKDRVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 301 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~----~~l~d~~~~vR~~~~~~l~~l~~ 368 (412)
+...+.+.+.......|...+..+..+....... .|...+.|.+. .......+.+|..+.+.+..+-+
T Consensus 33 Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~ 107 (121)
T smart00582 33 IVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETKKKIRRLLNIWEE 107 (121)
T ss_pred HHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 4444444444433445666666666665444322 23333333322 22223336788888888887765
No 426
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=22.49 E-value=3.8e+02 Score=20.93 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=25.0
Q ss_pred HHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150 337 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 372 (412)
Q Consensus 337 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 372 (412)
...++|.+..++.++.......++.++..+...+++
T Consensus 67 c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~ 102 (164)
T PF13925_consen 67 CVDLLPLIEELLQSKYESYISVALEMLRSILKKFGP 102 (164)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777766555
No 427
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=22.33 E-value=3.5e+02 Score=20.51 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=41.4
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch-----hHH---HHhhHHHHHhhcC-CCCc--hHHHHHHHHHHHHh
Q 015150 299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-----EIT---CSQLLPVVINASK-DRVP--NIKFNVAKVLQSLI 367 (412)
Q Consensus 299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~-----~~~---~~~il~~l~~~l~-d~~~--~vR~~~~~~l~~l~ 367 (412)
+.+.+.+++-+++++-..|...+..+..+++.+.. ..| ...-+|.++...- +... .-+..+.+.|..|.
T Consensus 39 edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~ 118 (139)
T PF12243_consen 39 EDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPYVSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWS 118 (139)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHH
Confidence 56778888888888777788888777777643322 122 2233444443332 2222 34557777877775
Q ss_pred h
Q 015150 368 P 368 (412)
Q Consensus 368 ~ 368 (412)
.
T Consensus 119 ~ 119 (139)
T PF12243_consen 119 K 119 (139)
T ss_pred H
Confidence 4
No 428
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=22.15 E-value=5.7e+02 Score=22.80 Aligned_cols=145 Identities=10% Similarity=0.029 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHH------HHHHHHHHhc----Cch---------hHHHHHHHHH
Q 015150 224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK------LGALCMQWLK----DKV---------YSIRDAAANN 284 (412)
Q Consensus 224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~------l~~~l~~~l~----d~~---------~~vr~~a~~~ 284 (412)
++.+.+.++...+.+...++..+..++..-|.....+. -.+.+-+++. +.. +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 66777777887787888888888888875543222111 1222333321 111 2899999998
Q ss_pred HHHHHHHhChhhh-----hhhhHHHHHhhhcCCchHHHHHHHHHHHH-hcc--ccc----hhHHHHhhHHHHHhhcCCCC
Q 015150 285 VKRLAEEFGPDWA-----MQHIVPQVLEMINNPHYLYRMTILQAISL-LAP--VMG----SEITCSQLLPVVINASKDRV 352 (412)
Q Consensus 285 l~~l~~~~~~~~~-----~~~~l~~l~~~~~~~~~~~r~~~~~~l~~-l~~--~~~----~~~~~~~il~~l~~~l~d~~ 352 (412)
+-.++....+... .+.++..+.+.+..+...+-...++.+.. +.. .++ ...|.+..+..+.++.....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 8888875543221 12346666666666555555556666553 221 122 12466777777888776666
Q ss_pred c----hHHHHHHHHHHHHhh
Q 015150 353 P----NIKFNVAKVLQSLIP 368 (412)
Q Consensus 353 ~----~vR~~~~~~l~~l~~ 368 (412)
+ .++..+-+.|..++.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred CcccchHHHHHHHHHHHHhc
Confidence 6 888888888888764
No 429
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=21.25 E-value=1.2e+03 Score=26.21 Aligned_cols=69 Identities=20% Similarity=0.169 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh--h-hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q 015150 261 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--W-AMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 329 (412)
Q Consensus 261 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~-~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~ 329 (412)
..+..+++.|+.....|..+++.+|..+......+ . .....++.+.+++.+++..+-+.++.+|..+..
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 35677788888888888888988888877543222 1 123466788888888888888888878777754
No 430
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.05 E-value=2.9e+02 Score=18.99 Aligned_cols=65 Identities=23% Similarity=0.236 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCch--hHHHHHHHHHHHHHHHHhCh-hhhhhhhHHHHHhhhcCCc--hHHHHHHHHHHH
Q 015150 261 KLGALCMQWLKDKV--YSIRDAAANNVKRLAEEFGP-DWAMQHIVPQVLEMINNPH--YLYRMTILQAIS 325 (412)
Q Consensus 261 ~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~~~~~~--~~~r~~~~~~l~ 325 (412)
+.+.++....+|.. ..||.+|-.+...+...-.. ..-....+..|.+..+|++ ...|...-..++
T Consensus 17 q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT~iw~vis 86 (93)
T COG1698 17 QVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPLHARTLIWNVIS 86 (93)
T ss_pred HHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34555555566653 34788777776665542211 1112345566666677776 334444333333
No 431
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=21.03 E-value=8.8e+02 Score=24.62 Aligned_cols=115 Identities=8% Similarity=0.007 Sum_probs=66.5
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhHHHHhhc---cCchhhh----hhhHHHHHhh-ccCCChHHHHHHHHHHHHHHHHh
Q 015150 26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKL---LEPQDCV----AHILPVIVNF-SQDKSWRVRYMVANQLYELCEAV 97 (412)
Q Consensus 26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~---~~~~~~~----~~l~~~l~~l-~~d~~~~vR~~~~~~l~~l~~~~ 97 (412)
+.++|-+..++-++++..|.=|...+..+.+. +..+... ..+...+... ....++..-...=..+..+.+.+
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i~~~~~~~~~~~~fW~g~~~Il~~l 198 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRISPNNYNPDSVIRFWSGFSLILRLL 198 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHc
Confidence 56777778888888999999999999888765 3443332 2233333333 22223322222334444454444
Q ss_pred CCCCcc--------cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHH
Q 015150 98 GPEPTR--------SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL 140 (412)
Q Consensus 98 ~~~~~~--------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 140 (412)
+.+.+. .-+...+...+.+.....-...++++..+.+..+.+.
T Consensus 199 d~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~F 249 (727)
T PF12726_consen 199 DKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDF 249 (727)
T ss_pred cHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHH
Confidence 433211 1145566666666645556777788888887776653
No 432
>KOG3534 consensus p53 inducible protein PIR121 [General function prediction only]
Probab=20.79 E-value=8.5e+02 Score=24.31 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=21.0
Q ss_pred ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150 176 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 213 (412)
Q Consensus 176 ~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~ 213 (412)
|...+.+.++.....++++.--.-.+..+...+.+++.
T Consensus 920 GIAVvmdelLKivk~Llqg~ilq~vktl~~~MPKiCkL 957 (1253)
T KOG3534|consen 920 GIAVVMDELLKIVKSLLQGTILQYVKTLMEVMPKICKL 957 (1253)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCC
Confidence 33344566666666677665444444555566666544
No 433
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=20.74 E-value=4.3e+02 Score=20.90 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcc
Q 015150 157 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD 194 (412)
Q Consensus 157 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 194 (412)
++.||..|++.+..+. ++. ....+|.+.+.++-
T Consensus 84 d~~VR~yAV~~L~~~s----d~e-L~~yL~QLVQaLKy 116 (171)
T cd00872 84 DEHVREFAVRCLEKLS----DDE-LLQYLLQLVQVLKY 116 (171)
T ss_pred CHHHHHHHHHHHHhCC----HHH-HHHHHHHHHHHHHc
Confidence 4778888888777654 222 22334555555543
Done!