Query 015150
Match_columns 412
No_of_seqs 228 out of 1490
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 07:34:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 2.2E-47 7.4E-52 365.6 37.8 407 1-407 177-587 (588)
2 1b3u_A Protein (protein phosph 100.0 1.1E-44 3.8E-49 346.8 38.9 408 2-410 101-512 (588)
3 4fdd_A Transportin-1; heat rep 100.0 3.7E-29 1.3E-33 248.6 44.4 404 2-411 27-475 (852)
4 4fdd_A Transportin-1; heat rep 100.0 3.8E-30 1.3E-34 255.7 37.0 407 2-411 104-561 (852)
5 2bpt_A Importin beta-1 subunit 100.0 5.9E-28 2E-32 241.1 41.0 408 2-411 238-715 (861)
6 1u6g_C TIP120 protein, CAND1; 100.0 4.5E-29 1.5E-33 257.2 32.4 408 2-411 62-552 (1230)
7 2bpt_A Importin beta-1 subunit 100.0 1.6E-27 5.4E-32 238.0 41.3 408 2-411 345-816 (861)
8 1u6g_C TIP120 protein, CAND1; 100.0 7.6E-28 2.6E-32 248.1 33.9 409 2-411 100-602 (1230)
9 1ibr_B P95, importin beta-1 su 100.0 1.4E-26 4.8E-31 214.7 36.4 380 2-386 15-459 (462)
10 1qgr_A Protein (importin beta 100.0 3.5E-26 1.2E-30 228.7 38.4 407 2-411 51-541 (876)
11 1qgr_A Protein (importin beta 100.0 1.6E-25 5.5E-30 223.9 41.9 406 2-409 342-873 (876)
12 2jdq_A Importin alpha-1 subuni 99.9 1.3E-24 4.5E-29 200.8 30.5 379 29-407 22-443 (450)
13 1wa5_B Importin alpha subunit; 99.9 2.9E-24 9.9E-29 202.2 32.2 380 27-407 87-510 (530)
14 1ibr_B P95, importin beta-1 su 99.9 3.8E-24 1.3E-28 198.3 30.0 346 2-349 51-461 (462)
15 2jdq_A Importin alpha-1 subuni 99.9 4E-23 1.4E-27 190.8 29.4 367 2-368 34-443 (450)
16 4b8j_A Importin subunit alpha- 99.9 1.9E-22 6.6E-27 189.8 32.3 378 29-407 76-496 (528)
17 1wa5_B Importin alpha subunit; 99.9 2.2E-22 7.4E-27 189.4 29.4 345 65-409 86-459 (530)
18 2vgl_B AP-2 complex subunit be 99.9 1.5E-21 5.2E-26 185.2 35.3 388 3-405 64-530 (591)
19 2vgl_B AP-2 complex subunit be 99.9 4.1E-21 1.4E-25 182.3 31.5 367 28-408 50-494 (591)
20 1jdh_A Beta-catenin; beta-cate 99.9 4.1E-21 1.4E-25 181.0 31.3 404 2-405 31-528 (529)
21 4b8j_A Importin subunit alpha- 99.9 6.7E-21 2.3E-25 179.3 31.0 368 2-369 88-497 (528)
22 2z6h_A Catenin beta-1, beta-ca 99.9 3.8E-20 1.3E-24 178.0 35.6 406 2-407 28-527 (644)
23 2z6g_A B-catenin; FULL-length, 99.9 2.1E-20 7E-25 182.6 34.2 406 2-407 164-663 (780)
24 3now_A UNC-45 protein, SD10334 99.9 2.4E-20 8.2E-25 178.0 31.8 405 2-407 304-782 (810)
25 1jdh_A Beta-catenin; beta-cate 99.9 1.4E-20 4.6E-25 177.5 24.9 387 20-406 10-488 (529)
26 3now_A UNC-45 protein, SD10334 99.9 7.2E-19 2.4E-23 168.0 36.5 407 1-407 217-694 (810)
27 2z6g_A B-catenin; FULL-length, 99.9 9.8E-20 3.3E-24 177.9 28.4 389 2-394 129-546 (780)
28 2z6h_A Catenin beta-1, beta-ca 99.9 4.5E-19 1.5E-23 170.5 31.1 385 23-407 10-486 (644)
29 3ul1_B Importin subunit alpha- 99.9 3.6E-19 1.2E-23 166.0 29.3 378 29-406 59-477 (510)
30 3tpo_A Importin subunit alpha- 99.9 9.7E-19 3.3E-23 164.1 31.8 377 29-405 78-495 (529)
31 1oyz_A Hypothetical protein YI 99.8 3.6E-19 1.2E-23 153.3 24.0 254 106-404 24-279 (280)
32 1w63_A Adapter-related protein 99.8 2.8E-19 9.5E-24 170.3 24.6 386 2-406 121-576 (618)
33 3ul1_B Importin subunit alpha- 99.8 3.7E-18 1.3E-22 159.2 28.2 342 68-409 59-432 (510)
34 3tpo_A Importin subunit alpha- 99.8 8.4E-18 2.9E-22 157.7 30.7 343 67-409 77-451 (529)
35 1oyz_A Hypothetical protein YI 99.8 9.9E-19 3.4E-23 150.5 20.6 253 67-364 24-278 (280)
36 1w63_A Adapter-related protein 99.8 1.1E-17 3.6E-22 159.4 28.1 366 26-408 106-541 (618)
37 2vgl_A Adaptor protein complex 99.8 6.5E-16 2.2E-20 146.6 31.2 390 2-406 125-588 (621)
38 2qk2_A LP04448P; mini spindles 99.8 2.7E-17 9.3E-22 138.1 18.4 181 225-410 18-208 (242)
39 1wa5_C Importin alpha RE-expor 99.7 3.7E-14 1.3E-18 142.5 40.4 393 8-408 23-526 (960)
40 3ltm_A Alpha-REP4; protein eng 99.7 1.7E-16 5.9E-21 130.4 19.5 188 65-292 18-205 (211)
41 3ltm_A Alpha-REP4; protein eng 99.7 8.4E-17 2.9E-21 132.2 17.6 188 183-410 19-206 (211)
42 2qk2_A LP04448P; mini spindles 99.7 1.2E-16 4.2E-21 134.1 18.8 192 59-254 8-208 (242)
43 2vgl_A Adaptor protein complex 99.7 2.8E-15 9.7E-20 142.2 30.4 368 26-409 110-511 (621)
44 3ltj_A Alpharep-4; protein eng 99.7 2E-16 6.9E-21 128.9 18.0 187 182-408 13-199 (201)
45 3ltj_A Alpharep-4; protein eng 99.7 7.2E-16 2.5E-20 125.6 20.4 183 27-249 14-196 (201)
46 1wa5_C Importin alpha RE-expor 99.7 1.1E-13 3.7E-18 139.1 36.6 407 2-411 51-586 (960)
47 1xm9_A Plakophilin 1; armadill 99.7 1.9E-14 6.4E-19 132.1 27.2 373 29-407 4-449 (457)
48 3l6x_A Catenin delta-1; cateni 99.7 8.7E-14 3E-18 128.7 31.3 360 48-407 29-476 (584)
49 4hxt_A De novo protein OR329; 99.7 2.6E-14 9E-19 120.8 23.5 225 185-409 4-243 (252)
50 2qk1_A Protein STU2; STU2P, XM 99.7 3.4E-15 1.2E-19 124.8 16.8 201 182-386 15-234 (249)
51 2qk1_A Protein STU2; STU2P, XM 99.7 4E-15 1.4E-19 124.3 16.6 190 221-411 15-224 (249)
52 4db8_A Armadillo-repeat protei 99.7 1.2E-14 4.2E-19 122.8 19.9 225 183-407 12-251 (252)
53 3l6x_A Catenin delta-1; cateni 99.7 3.4E-13 1.2E-17 124.8 30.7 345 24-368 45-476 (584)
54 1xm9_A Plakophilin 1; armadill 99.7 6.8E-14 2.3E-18 128.4 25.9 361 1-368 15-449 (457)
55 4hxt_A De novo protein OR329; 99.6 2.9E-14 9.9E-19 120.5 20.5 225 29-253 4-243 (252)
56 2x1g_F Cadmus; transport prote 99.6 4.2E-13 1.5E-17 135.3 32.4 400 2-410 54-575 (971)
57 2x19_B Importin-13; nuclear tr 99.6 6.2E-12 2.1E-16 126.9 39.2 400 2-410 72-559 (963)
58 2x1g_F Cadmus; transport prote 99.6 1.5E-13 5.3E-18 138.5 27.2 401 2-410 99-618 (971)
59 3m1i_C Exportin-1; heat repeat 99.6 2.2E-11 7.5E-16 123.5 41.6 397 3-410 31-572 (1049)
60 3ibv_A Exportin-T; karyopherin 99.6 4.4E-12 1.5E-16 126.2 35.5 406 2-411 57-570 (980)
61 4db8_A Armadillo-repeat protei 99.6 4.4E-14 1.5E-18 119.4 18.1 229 104-368 11-251 (252)
62 2x19_B Importin-13; nuclear tr 99.6 3E-12 1E-16 129.2 33.7 401 2-410 117-602 (963)
63 3m1i_C Exportin-1; heat repeat 99.6 4.7E-12 1.6E-16 128.4 33.7 404 2-410 114-621 (1049)
64 1lrv_A LRV, leucine-rich repea 99.6 6.7E-16 2.3E-20 126.9 3.6 186 33-324 56-241 (244)
65 2iw3_A Elongation factor 3A; a 99.6 1.2E-12 4E-17 127.2 26.0 262 144-411 54-328 (986)
66 4ady_A RPN2, 26S proteasome re 99.6 1E-11 3.5E-16 119.2 31.0 331 41-406 372-718 (963)
67 3nmz_A APC variant protein; pr 99.6 2.6E-12 8.7E-17 116.2 25.6 246 163-408 167-451 (458)
68 3nmz_A APC variant protein; pr 99.5 5.2E-12 1.8E-16 114.2 27.0 337 30-369 35-451 (458)
69 1lrv_A LRV, leucine-rich repea 99.5 1.8E-15 6.3E-20 124.3 4.0 188 71-364 55-242 (244)
70 4db6_A Armadillo repeat protei 99.5 1.1E-12 3.8E-17 107.4 18.2 187 221-407 11-209 (210)
71 3ibv_A Exportin-T; karyopherin 99.5 3.4E-11 1.2E-15 119.8 32.0 405 2-410 104-631 (980)
72 4hat_C Exportin-1; heat repeat 99.5 4E-10 1.4E-14 112.4 38.1 404 2-410 63-572 (1023)
73 4ady_A RPN2, 26S proteasome re 99.5 1.2E-11 4.1E-16 118.8 25.9 273 105-407 392-676 (963)
74 3opb_A SWI5-dependent HO expre 99.5 3.1E-10 1.1E-14 106.9 32.6 378 29-408 257-729 (778)
75 4hat_C Exportin-1; heat repeat 99.5 2.4E-10 8.3E-15 113.9 33.8 404 3-411 115-622 (1023)
76 4db6_A Armadillo repeat protei 99.5 1.8E-12 6.1E-17 106.2 15.1 187 25-211 10-208 (210)
77 3opb_A SWI5-dependent HO expre 99.4 2.9E-10 9.9E-15 107.1 30.2 363 4-368 272-728 (778)
78 2db0_A 253AA long hypothetical 99.4 1.7E-09 5.9E-14 81.3 24.9 217 181-408 30-247 (253)
79 2of3_A ZYG-9; multifunctional 99.4 1.3E-10 4.6E-15 95.8 20.0 180 226-411 50-240 (266)
80 2iw3_A Elongation factor 3A; a 99.4 2E-10 6.8E-15 111.8 24.1 288 31-328 19-323 (986)
81 4ffb_C Protein STU2; tubulin f 99.3 1.6E-11 5.5E-16 104.9 14.1 182 227-411 14-216 (278)
82 3nmw_A APC variant protein; AR 99.3 3.8E-10 1.3E-14 99.0 23.1 251 120-370 47-336 (354)
83 3nmw_A APC variant protein; AR 99.3 2.3E-10 8E-15 100.3 20.9 250 159-408 47-335 (354)
84 3gjx_A Exportin-1; transport, 99.3 8.3E-08 2.8E-12 95.6 39.2 403 2-410 75-598 (1073)
85 1xqr_A HSPBP1 protein; armadil 99.3 8.3E-10 2.8E-14 94.2 21.1 209 198-406 55-286 (296)
86 3tjz_B Coatomer subunit gamma; 99.3 1.3E-10 4.6E-15 100.6 16.1 282 26-324 67-348 (355)
87 3tjz_B Coatomer subunit gamma; 99.3 8.3E-11 2.8E-15 101.9 14.5 283 105-404 68-350 (355)
88 3oc3_A Helicase MOT1, MOT1; re 99.3 8.1E-11 2.8E-15 104.2 13.9 257 106-403 175-432 (800)
89 2of3_A ZYG-9; multifunctional 99.2 1.7E-09 5.7E-14 89.3 20.0 179 191-375 54-243 (266)
90 1xqr_A HSPBP1 protein; armadil 99.2 8.5E-10 2.9E-14 94.1 18.8 171 238-408 56-239 (296)
91 2db0_A 253AA long hypothetical 99.2 2.9E-08 1E-12 74.8 23.1 214 143-367 31-245 (253)
92 3l9t_A Putative uncharacterize 99.2 3.7E-10 1.3E-14 89.8 12.7 138 25-173 69-207 (240)
93 4ffb_C Protein STU2; tubulin f 99.2 1E-09 3.5E-14 93.6 16.4 183 110-295 14-217 (278)
94 3gjx_A Exportin-1; transport, 99.2 2.2E-07 7.4E-12 92.6 33.9 405 2-411 126-648 (1073)
95 1te4_A Conserved protein MTH18 99.1 5.6E-12 1.9E-16 94.5 0.8 122 259-405 10-131 (131)
96 3b2a_A TON_1937, putative unch 99.1 3E-08 1E-12 78.1 21.3 222 183-408 33-262 (265)
97 3oc3_A Helicase MOT1, MOT1; re 99.1 2.1E-09 7.1E-14 95.5 16.2 255 67-364 175-432 (800)
98 3b2a_A TON_1937, putative unch 99.1 1.6E-09 5.4E-14 85.2 13.8 184 26-213 32-219 (265)
99 3a6p_A Exportin-5; exportin-5, 99.1 2E-07 6.8E-12 95.4 30.2 402 2-409 110-659 (1204)
100 1te4_A Conserved protein MTH18 99.0 3.1E-11 1E-15 90.4 1.3 122 25-171 10-131 (131)
101 3a6p_A Exportin-5; exportin-5, 99.0 5.6E-07 1.9E-11 92.1 32.6 404 2-410 61-616 (1204)
102 3l9t_A Putative uncharacterize 98.9 7.4E-08 2.5E-12 76.7 14.1 139 64-213 69-208 (240)
103 1vsy_5 Proteasome activator BL 98.7 1.2E-06 4E-11 86.8 21.7 347 22-373 503-971 (997)
104 3u0r_A Apoptosis inhibitor 5; 98.6 4E-05 1.4E-09 67.6 24.4 256 3-270 43-317 (507)
105 3grl_A General vesicular trans 98.5 0.0001 3.6E-09 68.1 26.7 304 25-328 20-393 (651)
106 3u0r_A Apoptosis inhibitor 5; 98.4 0.00028 9.6E-09 62.3 23.8 71 316-386 241-320 (507)
107 3grl_A General vesicular trans 98.4 0.00013 4.5E-09 67.4 22.6 288 4-291 38-395 (651)
108 4gmo_A Putative uncharacterize 98.4 0.00061 2.1E-08 65.6 28.5 148 25-173 33-214 (684)
109 3tt9_A Plakophilin-2; cell adh 98.3 0.0001 3.5E-09 60.0 18.5 183 224-406 10-228 (233)
110 3tt9_A Plakophilin-2; cell adh 98.2 6.4E-05 2.2E-09 61.2 14.9 126 104-229 7-142 (233)
111 4gmo_A Putative uncharacterize 98.1 0.0017 5.9E-08 62.5 24.9 149 64-213 33-215 (684)
112 1vsy_5 Proteasome activator BL 98.0 0.0015 5E-08 65.0 22.1 379 22-407 462-966 (997)
113 1lsh_A Lipovitellin (LV-1N, LV 97.6 0.0057 1.9E-07 61.8 20.1 134 222-366 391-541 (1056)
114 1lsh_A Lipovitellin (LV-1N, LV 97.4 0.0076 2.6E-07 60.9 17.5 225 80-333 339-580 (1056)
115 3gs3_A Symplekin, LD45768P; he 97.2 0.065 2.2E-06 44.1 22.4 160 25-213 14-174 (257)
116 3gs3_A Symplekin, LD45768P; he 96.9 0.12 3.9E-06 42.6 17.6 130 276-408 30-174 (257)
117 3o2t_A Symplekin; heat repeat, 96.7 0.25 8.7E-06 43.1 24.2 251 105-386 26-319 (386)
118 3o2t_A Symplekin; heat repeat, 96.1 0.66 2.2E-05 40.6 29.3 104 26-133 25-128 (386)
119 4atg_A TAF6; transcription, TF 95.8 0.36 1.2E-05 37.6 13.2 111 235-349 59-178 (196)
120 1upk_A MO25 protein; transfera 95.7 0.86 2.9E-05 38.7 19.7 208 181-390 76-313 (341)
121 2b6c_A Hypothetical protein EF 95.5 0.35 1.2E-05 38.8 12.8 131 30-174 58-189 (220)
122 3ldz_A STAM-1, signal transduc 94.9 0.32 1.1E-05 35.8 10.0 97 231-333 18-118 (140)
123 3jxy_A Alkylpurine DNA glycosy 94.9 1.3 4.3E-05 35.9 14.5 30 184-213 167-196 (232)
124 3g2s_A C-terminal fragment of 94.0 1.4 4.7E-05 32.7 12.1 98 231-334 24-131 (149)
125 1upk_A MO25 protein; transfera 93.9 2.6 9E-05 35.8 21.3 186 220-407 76-283 (341)
126 3g2s_A C-terminal fragment of 93.5 0.52 1.8E-05 35.0 8.6 75 299-373 47-131 (149)
127 1x5b_A Signal transducing adap 93.3 1.2 4.1E-05 33.7 10.5 97 232-334 29-130 (163)
128 1mhq_A ADP-ribosylation factor 93.1 1.7 6E-05 32.1 10.9 96 232-333 15-120 (148)
129 1juq_A ADP-ribosylation factor 92.9 1.4 4.8E-05 33.6 10.5 87 299-385 49-145 (171)
130 2b6c_A Hypothetical protein EF 92.7 2.4 8.4E-05 33.9 12.3 132 224-369 57-189 (220)
131 1mhq_A ADP-ribosylation factor 92.7 2.3 7.9E-05 31.5 11.4 75 299-373 37-121 (148)
132 4atg_A TAF6; transcription, TF 92.4 3.1 0.00011 32.4 15.6 142 159-311 23-179 (196)
133 1juq_A ADP-ribosylation factor 92.3 1.8 6.1E-05 33.0 10.3 97 232-334 27-133 (171)
134 3ldz_A STAM-1, signal transduc 92.2 2.5 8.7E-05 30.9 11.0 73 65-137 41-117 (140)
135 3zyq_A Hepatocyte growth facto 91.6 2.1 7.1E-05 34.4 10.6 98 231-334 21-123 (226)
136 1vdy_A Hypothetical protein (R 90.5 1.4 4.8E-05 32.1 7.6 70 336-406 46-129 (140)
137 3jxy_A Alkylpurine DNA glycosy 90.3 4.4 0.00015 32.7 11.4 160 106-286 62-223 (232)
138 1x5b_A Signal transducing adap 90.0 5 0.00017 30.3 11.4 76 64-139 50-130 (163)
139 1ho8_A Vacuolar ATP synthase s 87.2 1.8 6.2E-05 38.8 7.6 57 40-96 418-477 (480)
140 1elk_A Target of MYB1; superhe 87.2 7.7 0.00026 29.0 10.3 95 232-332 30-133 (157)
141 3fga_B Serine/threonine-protei 86.8 16 0.00053 32.1 21.7 251 155-407 95-366 (403)
142 3ut4_A CTHE_2751, putative unc 86.5 3.9 0.00013 29.4 7.6 94 299-405 30-128 (134)
143 3zyq_A Hepatocyte growth facto 86.4 11 0.00038 30.1 12.1 95 76-176 22-121 (226)
144 1elk_A Target of MYB1; superhe 85.9 6.4 0.00022 29.4 9.0 74 299-372 52-134 (157)
145 2npp_B PP2A, B subunit, serine 84.4 22 0.00076 31.7 21.8 252 154-407 127-399 (449)
146 1t06_A Hypothetical protein; s 81.8 19 0.00065 29.0 10.9 67 106-172 109-179 (235)
147 1dvp_A HRS, hepatocyte growth 80.8 20 0.00067 28.6 11.3 33 301-333 43-75 (220)
148 3rru_A TOM1L1 protein; structu 79.3 17 0.00058 26.9 9.5 98 231-334 29-135 (152)
149 3bwt_A Protein PUF4; pumilio, 78.1 31 0.0011 29.4 12.1 8 345-352 276-283 (333)
150 3gvo_A Pumilio 2, pumilio homo 77.7 34 0.0011 29.5 15.6 48 336-386 295-342 (351)
151 1dvp_A HRS, hepatocyte growth 76.8 14 0.00047 29.5 8.5 31 28-58 43-73 (220)
152 1vsy_4 Proteasome activator BL 75.4 63 0.0022 31.5 22.8 76 140-215 335-415 (799)
153 3ut4_A CTHE_2751, putative unc 74.7 21 0.00072 25.7 9.0 92 262-366 32-128 (134)
154 3dad_A FH1/FH2 domain-containi 71.5 47 0.0016 28.3 16.3 68 185-252 162-232 (339)
155 2fv2_A RCD1 required for cell 69.8 44 0.0015 27.2 11.6 94 314-407 116-224 (268)
156 2npp_B PP2A, B subunit, serine 68.3 67 0.0023 28.7 20.9 250 77-330 128-400 (449)
157 1t06_A Hypothetical protein; s 66.5 20 0.00068 28.9 7.3 72 67-138 109-184 (235)
158 1vdy_A Hypothetical protein (R 66.4 35 0.0012 24.8 9.2 64 228-292 17-80 (140)
159 1sz9_A PCF11 protein; RNA poly 65.4 37 0.0013 24.8 9.1 69 338-406 42-113 (144)
160 3fga_B Serine/threonine-protei 64.4 74 0.0025 27.9 22.7 251 76-329 94-366 (403)
161 3dad_A FH1/FH2 domain-containi 62.1 74 0.0025 27.1 17.5 99 116-214 129-233 (339)
162 3k49_A MRNA-binding protein PU 56.8 97 0.0033 26.8 10.9 9 378-386 335-343 (369)
163 3s4w_B Protein FACD2, fanconi 56.1 86 0.0029 32.5 10.9 154 22-176 395-552 (1323)
164 4f52_E Glomulin; cullin-ring E 51.2 1.3E+02 0.0046 28.1 10.8 106 22-130 312-427 (596)
165 3ebb_A Phospholipase A2-activa 51.0 1.1E+02 0.0038 25.7 16.7 94 314-407 162-263 (304)
166 3rru_A TOM1L1 protein; structu 50.9 72 0.0025 23.5 9.6 73 65-137 52-133 (152)
167 2jak_A Serine/threonine-protei 49.2 1.4E+02 0.0046 26.2 17.8 208 76-285 139-362 (392)
168 1vsy_4 Proteasome activator BL 48.6 2E+02 0.0069 28.0 24.5 109 105-213 339-456 (799)
169 2fv2_A RCD1 required for cell 48.1 1.1E+02 0.0038 24.9 14.8 69 26-94 100-173 (268)
170 3gvo_A Pumilio 2, pumilio homo 47.6 1.3E+02 0.0046 25.7 15.6 14 144-157 131-144 (351)
171 3gae_A Protein DOA1; UFD3, CDC 46.1 1.1E+02 0.0037 24.9 8.4 65 34-98 97-172 (253)
172 1sz9_A PCF11 protein; RNA poly 45.8 84 0.0029 22.9 10.0 72 298-369 41-115 (144)
173 4flb_A Regulation of nuclear P 44.7 81 0.0028 22.4 9.4 93 267-368 14-112 (132)
174 2jak_A Serine/threonine-protei 44.4 1.6E+02 0.0055 25.7 16.5 208 154-363 139-362 (392)
175 3l3f_X Protein DOA1, DOA1/UFD3 39.9 34 0.0011 29.6 4.6 105 29-133 201-325 (362)
176 3k49_A MRNA-binding protein PU 39.4 1.9E+02 0.0063 25.0 11.2 48 104-157 27-77 (369)
177 3d9j_A RNA-binding protein 16; 38.8 75 0.0026 23.2 5.8 68 299-367 41-118 (145)
178 2rg8_A Programmed cell death p 37.0 1.2E+02 0.004 22.7 6.7 68 59-133 5-72 (165)
179 1w9c_A CRM1 protein, exportin 36.6 1.9E+02 0.0067 24.4 22.3 137 158-294 43-200 (321)
180 3pst_A Protein DOA1; protein d 36.4 42 0.0014 29.7 4.7 104 30-133 265-388 (425)
181 3pst_A Protein DOA1; protein d 33.5 34 0.0012 30.3 3.6 97 311-407 273-389 (425)
182 3l3f_X Protein DOA1, DOA1/UFD3 32.9 30 0.001 29.9 3.2 97 311-407 210-326 (362)
183 4fu3_A Regulation of nuclear P 31.7 1.3E+02 0.0045 21.3 6.1 32 298-329 37-68 (135)
184 3vld_A DNA mismatch repair pro 31.1 3E+02 0.01 24.9 18.7 143 182-331 72-227 (500)
185 2jtt_C Calcyclin-binding prote 29.9 65 0.0022 16.9 3.2 26 378-403 7-32 (35)
186 3gae_A Protein DOA1; UFD3, CDC 28.9 1.6E+02 0.0056 23.8 6.8 97 311-407 101-217 (253)
187 4fu3_A Regulation of nuclear P 28.8 63 0.0021 23.1 3.9 33 354-389 99-131 (135)
188 4flb_A Regulation of nuclear P 27.2 1.7E+02 0.0057 20.7 8.8 96 303-407 11-112 (132)
189 1w9c_A CRM1 protein, exportin 26.2 3E+02 0.01 23.3 25.8 96 119-214 43-153 (321)
190 1ho8_A Vacuolar ATP synthase s 25.5 3.8E+02 0.013 24.2 26.2 54 274-327 418-474 (480)
191 4f52_E Glomulin; cullin-ring E 23.9 4.5E+02 0.015 24.6 11.8 105 259-366 315-429 (596)
192 3vld_A DNA mismatch repair pro 23.4 4.1E+02 0.014 24.0 16.2 147 102-253 70-227 (500)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=2.2e-47 Score=365.56 Aligned_cols=407 Identities=57% Similarity=0.936 Sum_probs=378.1
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCCh
Q 015150 1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSW 80 (412)
Q Consensus 1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~ 80 (412)
+|.||..++++++.++...+.+.+.+.++|.+..+++|+++.+|..|+.+++.++...+++...+.++|.+.++.+|++|
T Consensus 177 ~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~ 256 (588)
T 1b3u_A 177 TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 256 (588)
T ss_dssp CHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSH
T ss_pred CHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCH
Confidence 37899999999999999888777778899999999999999999999999999999988877778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH----HHHHhhhhhHHHhccCC
Q 015150 81 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDS 156 (412)
Q Consensus 81 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~~~d~ 156 (412)
.+|..++++++.++...+.+....+++|.+.++++|+++.||..++.+++.+++..+++ .+.+.++|.+..+++|+
T Consensus 257 ~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~ 336 (588)
T 1b3u_A 257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA 336 (588)
T ss_dssp HHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC
Confidence 99999999999999988766666789999999999999999999999999999988765 56778999999999999
Q ss_pred cHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCc
Q 015150 157 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW 236 (412)
Q Consensus 157 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~ 236 (412)
+|.||..++.+++.++..+|.+...+.++|.+..+++|++++||..++.+++.+....+.+...+.++|.+.++++|++|
T Consensus 337 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~ 416 (588)
T 1b3u_A 337 NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKW 416 (588)
T ss_dssp CHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSH
T ss_pred CHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999887778899999999999999999999999999999888776678899999999999999
Q ss_pred hHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHH
Q 015150 237 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 316 (412)
Q Consensus 237 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 316 (412)
++|..++.+++.++..+|.+.+.+.++|.+..+++|+++.||..|+.+++.+...+|.++..+.++|.+.....+++|.+
T Consensus 417 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~ 496 (588)
T 1b3u_A 417 RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLH 496 (588)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHH
T ss_pred hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHH
Confidence 99999999999999999988777889999999999999999999999999999999998878889999999999999999
Q ss_pred HHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHH
Q 015150 317 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRF 396 (412)
Q Consensus 317 r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~ 396 (412)
|.+++.+++.++..+|.+.+.+.++|.+.+.++|++++||..++++++.+...+|.+...+.+.|.+..+.+|+|++||.
T Consensus 497 R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~ 576 (588)
T 1b3u_A 497 RMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKY 576 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHH
Confidence 99999999999999998888999999999999999999999999999999999998877789999999999999999999
Q ss_pred HHHHHHHHhHH
Q 015150 397 FATQALQSKDQ 407 (412)
Q Consensus 397 ~a~~al~~~~~ 407 (412)
.|.+|++.+..
T Consensus 577 ~a~~al~~l~~ 587 (588)
T 1b3u_A 577 FAQEALTVLSL 587 (588)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhhc
Confidence 99999998753
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1.1e-44 Score=346.77 Aligned_cols=408 Identities=22% Similarity=0.295 Sum_probs=341.0
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChH
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWR 81 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~ 81 (412)
+.||..++++++.++...+++...+.++|++..+.+++++.+|..++.+++.++...++. ..+.++|.+.++++|+++.
T Consensus 101 ~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~ 179 (588)
T 1b3u_A 101 TVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA-VKAELRQYFRNLCSDDTPM 179 (588)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH-HHHHHHHHHHHHHTCSCHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHhCCCCHH
Confidence 568888888888888877766677778888888888888888888888888888777654 5677899999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHH
Q 015150 82 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVR 161 (412)
Q Consensus 82 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr 161 (412)
||..++++++.++...+.+.....++|.+..+++|+++.||..|+.+++.+++..+++...+.++|.+..+++|++|.||
T Consensus 180 VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR 259 (588)
T 1b3u_A 180 VRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVR 259 (588)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHH
Confidence 99999999999998877666667899999999999999999999999999999999888888899999999999999999
Q ss_pred HHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh----hHHhhHHHHHHHHhcCCCch
Q 015150 162 SALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWR 237 (412)
Q Consensus 162 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~----~~~~~~~~~l~~~~~d~~~~ 237 (412)
..++.+++.++...|.+.....++|.+..+++|++++||..++.+++.++..++.+ ...+.++|.+..+++|++|.
T Consensus 260 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~ 339 (588)
T 1b3u_A 260 YMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQH 339 (588)
T ss_dssp HHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHH
T ss_pred HHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHH
Confidence 99999999999888887777889999999999999999999999999999888765 45678899999999999999
Q ss_pred HHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHH
Q 015150 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYR 317 (412)
Q Consensus 238 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r 317 (412)
+|.+++.+++.++..+|.+...+.+.|.+..+++|+++.||..++.+++.+...++.+...+.++|.+.+.+.|++|++|
T Consensus 340 vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr 419 (588)
T 1b3u_A 340 VKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVR 419 (588)
T ss_dssp HHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHH
Confidence 99999999999999888877667788888888888888899999988888888877766666778888888888888888
Q ss_pred HHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHH
Q 015150 318 MTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFF 397 (412)
Q Consensus 318 ~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~ 397 (412)
.+++.+++.++..+|.+.+.+.++|.+..+++|+++.||..++.+++.+...+|++.+.+.++|.+..+.+|++..+|..
T Consensus 420 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~ 499 (588)
T 1b3u_A 420 LAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMT 499 (588)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHH
Confidence 88888888887777776666677788888888887888888888888777777665555566666666666666666666
Q ss_pred HHHHHHHhHHhhh
Q 015150 398 ATQALQSKDQVMM 410 (412)
Q Consensus 398 a~~al~~~~~~~~ 410 (412)
+..+++.++..+|
T Consensus 500 a~~~l~~l~~~~~ 512 (588)
T 1b3u_A 500 TLFCINVLSEVCG 512 (588)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 6666666655443
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=3.7e-29 Score=248.64 Aligned_cols=404 Identities=17% Similarity=0.184 Sum_probs=323.9
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhc-cC--chhhhhhhHHHHHhhccCC
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL-LE--PQDCVAHILPVIVNFSQDK 78 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~-~~--~~~~~~~l~~~l~~l~~d~ 78 (412)
+.+|++|-+.|..+.. .+.+...+..++..+ .+.++.+|..|+..+.+.... +. ++..+..+.+.+.+.+.|+
T Consensus 27 ~~~r~~Ae~~L~~~~~---~p~~~~~l~~il~~~-~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~ 102 (852)
T 4fdd_A 27 TTIQRTVQQKLEQLNQ---YPDFNNYLIFVLTKL-KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDS 102 (852)
T ss_dssp HHHHHHHHHHHHHHTT---SHHHHHHHHHHHHTC-TTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHHHHHHh---CCCHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCC
Confidence 4678888888876432 233444455554432 466788999999888877753 22 2345667888888888999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHH-------HHhhhhhHHH
Q 015150 79 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-------IQHILPCVKE 151 (412)
Q Consensus 79 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~~~~~l~~ 151 (412)
++.+|..++.+++.++...+. ..+++++|.+.+.++++++.+|..++.+++.+++..++... .+.++|.+.+
T Consensus 103 ~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~ 181 (852)
T 4fdd_A 103 SPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ 181 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHH
Confidence 999999999999999987633 45889999999999999999999999999999988776532 4568888899
Q ss_pred hccCCcHHHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh--hHHhhHHHHH
Q 015150 152 LSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAI 227 (412)
Q Consensus 152 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~--~~~~~~~~~l 227 (412)
+++|+++.||..+++++..+....+... ....+++.+...+.|+++++|..++.+|..++...+.. ...+.+++.+
T Consensus 182 ~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l 261 (852)
T 4fdd_A 182 FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYM 261 (852)
T ss_dssp TTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999999999999999998876544322 12467888888899999999999999999998765421 2235678888
Q ss_pred HHHhcCCCchHHHHHHHHhhHHHhhhCh----hhHHHHHHHHHHHHh-----------cC-----------chhHHHHHH
Q 015150 228 VELAEDRHWRVRLAIIEYIPLLASQLGV----GFFDDKLGALCMQWL-----------KD-----------KVYSIRDAA 281 (412)
Q Consensus 228 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l-----------~d-----------~~~~vr~~a 281 (412)
...+.|.++.+|..+++.+..+++.... ..+.+.++|.++..+ .| .++.+|.+|
T Consensus 262 ~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a 341 (852)
T 4fdd_A 262 LQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCS 341 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHH
T ss_pred HHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHH
Confidence 8899999999999999998887753211 123456888888887 44 456799999
Q ss_pred HHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHH
Q 015150 282 ANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNV 359 (412)
Q Consensus 282 ~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~ 359 (412)
..+++.+....|. .....++|.+.+.+.+++|.+|.+++.+++.+++.++.. .+.+.++|.+...++|+++.||.++
T Consensus 342 ~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a 420 (852)
T 4fdd_A 342 AAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSIT 420 (852)
T ss_dssp HHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999998874 455678999999999999999999999999999877653 4678899999999999999999999
Q ss_pred HHHHHHHhhhhch---HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150 360 AKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 360 ~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 411 (412)
+++++.++...++ ..+...++|.+...+.|++++||..++.+++.+++..+.
T Consensus 421 ~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 421 CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT 475 (852)
T ss_dssp HHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence 9999999987654 245567888888888999999999999999999987664
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=3.8e-30 Score=255.73 Aligned_cols=407 Identities=15% Similarity=0.139 Sum_probs=330.9
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhh-------hhhhHHHHHhh
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC-------VAHILPVIVNF 74 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~-------~~~l~~~l~~l 74 (412)
+.||..++.+++.+++..++ ..|+.+++.+...++++++.+|..++.+++.+++..++... ...++|.+.++
T Consensus 104 ~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~ 182 (852)
T 4fdd_A 104 PLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQF 182 (852)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHH
Confidence 67999999999999987643 45888999999999999999999999999999988765421 45688999999
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhCCC--CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHH
Q 015150 75 SQDKSWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVK 150 (412)
Q Consensus 75 ~~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~ 150 (412)
++|+++.||..++.+++.+....+.. .....+++.+...++|+++.||..++.+|..+++..+.. .+...+++.+.
T Consensus 183 l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~ 262 (852)
T 4fdd_A 183 FKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYML 262 (852)
T ss_dssp TTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999999998776532211 122468888999999999999999999999998865443 23445788888
Q ss_pred HhccCCcHHHHHHHHHHHHhcCcccCh----hHHHHhhHHHHHHhh-----------cc-----------cChHHHHHHH
Q 015150 151 ELSSDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLL-----------KD-----------EFPDVRLNII 204 (412)
Q Consensus 151 ~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l-----------~d-----------~~~~vr~~~~ 204 (412)
+.++|.++.||..+++.+..+++.... ......++|.+...+ .| .++.+|..+.
T Consensus 263 ~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~ 342 (852)
T 4fdd_A 263 QRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSA 342 (852)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHH
T ss_pred HHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHH
Confidence 889999999999999999988764211 123356778887776 33 3456899999
Q ss_pred HHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh--hHHHHHHHHHHHHhcCchhHHHHHHH
Q 015150 205 SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAA 282 (412)
Q Consensus 205 ~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~ 282 (412)
.+++.++...+. ...+.++|.+.+.+.+++|++|.+++.+++.+++..+.. .+.+.++|.+...++|+++.||.+|+
T Consensus 343 ~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~ 421 (852)
T 4fdd_A 343 AALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITC 421 (852)
T ss_dssp HHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999998875 445789999999999999999999999999998866542 24577999999999999999999999
Q ss_pred HHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHH
Q 015150 283 NNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKF 357 (412)
Q Consensus 283 ~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~ 357 (412)
.+++.+.+..+. ..+...+++.+.+.+.|+++.+|..++.+++.+++.++.. .+.+.+++.+...+++.......
T Consensus 422 ~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~ 501 (852)
T 4fdd_A 422 WTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLL 501 (852)
T ss_dssp HHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHH
Confidence 999999987643 2345678899999999999999999999999999877764 57788999999999877777777
Q ss_pred HHHHHHHHHhhhhchH----HHHhhHHHHHHh---hcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150 358 NVAKVLQSLIPIVDQS----VVEKSIRPCLVE---LSEDPDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 358 ~~~~~l~~l~~~~~~~----~~~~~i~~~l~~---l~~d~~~~vr~~a~~al~~~~~~~~~ 411 (412)
.++.+++.++...|+. .+.+.++|.+.+ .+.|.++++| .+.++++.++..+|.
T Consensus 502 ~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~ 561 (852)
T 4fdd_A 502 ILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQS 561 (852)
T ss_dssp HHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhH
Confidence 8889999998776653 355677787763 5678888886 789999999998875
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.97 E-value=5.9e-28 Score=241.06 Aligned_cols=408 Identities=12% Similarity=0.146 Sum_probs=329.1
Q ss_pred chhHHHHHHHHHHHHHHhhhh--hhHH-HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc------------------
Q 015150 2 PMVRRSAATNLGKFAATVEAA--HLKS-EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP------------------ 60 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~--~~~~-~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~------------------ 60 (412)
+.+|..++++++.++...+.. .... .+++.+...+.|.++.+|..+++.+..++.....
T Consensus 238 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (861)
T 2bpt_A 238 IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNF 317 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHH
Confidence 578999999999999876532 1233 6778888888999999999999999988875311
Q ss_pred -hhhhhhhHHHHHhhccC-------CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHH
Q 015150 61 -QDCVAHILPVIVNFSQD-------KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 132 (412)
Q Consensus 61 -~~~~~~l~~~l~~l~~d-------~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 132 (412)
......++|.+...+.+ .+|.+|..+..+|+.++..++.. ....++|.+.+.++|++|.+|.+++.+++.+
T Consensus 318 ~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i 396 (861)
T 2bpt_A 318 ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQNITADNWRNREAAVMAFGSI 396 (861)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Confidence 11235577777766653 45899999999999999988743 3467889999999999999999999999999
Q ss_pred HHhhCHH---HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh----hHHHHhhHHHHHHhhcccChHHHHHHHH
Q 015150 133 CRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPDVRLNIIS 205 (412)
Q Consensus 133 ~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~~~~ 205 (412)
++..+++ .+...++|.+...+.|+++.||.+++.+++.++..++. ......++|.+.+.++|+ +.+|..++.
T Consensus 397 ~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~ 475 (861)
T 2bpt_A 397 MDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSW 475 (861)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHH
Confidence 9876633 34456888899999999999999999999999877654 334578889999999886 999999999
Q ss_pred HHHHHHHhhch---h---hHHhhHHHHHHHHhcC--CCchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcC---
Q 015150 206 KLDQVNQVIGI---D---LLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKD--- 272 (412)
Q Consensus 206 ~l~~i~~~~~~---~---~~~~~~~~~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d--- 272 (412)
++..++...+. + .+.+.+++.+.+.+++ .++.+|..++.+++.++...+... +...++|.+++.+.+
T Consensus 476 al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 555 (861)
T 2bpt_A 476 TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMS 555 (861)
T ss_dssp HHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999887651 2 3346677888888874 458999999999999999887643 345677777776653
Q ss_pred ------------chhHHHHHHHHHHHHHHHHhChh--hhhhhhHHHHHhhhcCCch-HHHHHHHHHHHHhccccchh--H
Q 015150 273 ------------KVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHY-LYRMTILQAISLLAPVMGSE--I 335 (412)
Q Consensus 273 ------------~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~-~~r~~~~~~l~~l~~~~~~~--~ 335 (412)
....+|..++.+++.++..+|.+ .+.+.+++.+...+.+.++ .+|..++.+++.++..+|.+ .
T Consensus 556 ~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~ 635 (861)
T 2bpt_A 556 VDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEK 635 (861)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHH
T ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHH
Confidence 35668999999999999988764 2356788888888888777 89999999999999888765 4
Q ss_pred HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcCCCC--ccHHHHHHHHHHHhHHhhhC
Q 015150 336 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPD--VDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 336 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~--~~vr~~a~~al~~~~~~~~~ 411 (412)
+.+.++|.+.+.++++++.+|..++.+++.+....|.. .+...++|.+...+.+++ .++|..+..+++.++..+|+
T Consensus 636 ~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 636 YLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 68889999999999999999999999999999888764 355778888888777664 89999999999999998775
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.97 E-value=4.5e-29 Score=257.22 Aligned_cols=408 Identities=13% Similarity=0.158 Sum_probs=328.8
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch--------hhhhhhHHHHHh
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--------DCVAHILPVIVN 73 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~--------~~~~~l~~~l~~ 73 (412)
+.||+.|+.+++.++...+. ...+.+++.+...+.|+++.+|..|+.+++.++..++++ ...+.++|.+..
T Consensus 62 ~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~ 140 (1230)
T 1u6g_C 62 GEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTS 140 (1230)
T ss_dssp HHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHH
Confidence 67999999999999987665 456778888888888998999999999999999988765 257889999999
Q ss_pred hcc-CCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHH
Q 015150 74 FSQ-DKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVK 150 (412)
Q Consensus 74 l~~-d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 150 (412)
.+. ++++.+|..++.+++.++...+... +.+.+++.+...+.|+++.||..|+.+++.++...+++. ...+++.+.
T Consensus 141 ~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~ 219 (1230)
T 1u6g_C 141 AIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLL 219 (1230)
T ss_dssp HHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHH
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence 988 4889999999999999998776543 346788889999999999999999999999998876553 345566666
Q ss_pred Hhcc-CCcHHHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh--hHHhhHHH
Q 015150 151 ELSS-DSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLP 225 (412)
Q Consensus 151 ~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~--~~~~~~~~ 225 (412)
..+. +.++.+|..++++++.++...|+.. +...++|.+...+.|+++++|..++.+++.++...+.+ .+.+.++|
T Consensus 220 ~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~ 299 (1230)
T 1u6g_C 220 SELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIIN 299 (1230)
T ss_dssp HHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHH
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHH
Confidence 6553 3345788889999999988776532 23688999999999999999999999999999887643 24455666
Q ss_pred HHHHHhc-------------------------------------CCCchHHHHHHHHhhHHHhhhCh--hhHHHHHHHHH
Q 015150 226 AIVELAE-------------------------------------DRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALC 266 (412)
Q Consensus 226 ~l~~~~~-------------------------------------d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l 266 (412)
.+.+.+. |..|++|.+++.++..++...+. ..+.+.++|.+
T Consensus 300 ~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l 379 (1230)
T 1u6g_C 300 ICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPAL 379 (1230)
T ss_dssp HHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHH
T ss_pred HHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 6654331 23589999999999999986654 33455678888
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHhCh---------------------hhhhhhhHHHHHhhhcCCchHHHHHHHHHHH
Q 015150 267 MQWLKDKVYSIRDAAANNVKRLAEEFGP---------------------DWAMQHIVPQVLEMINNPHYLYRMTILQAIS 325 (412)
Q Consensus 267 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------------------~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~ 325 (412)
...+.|++..||.+++.++..++...+. +.+.+.++|.+.+.+++++|.+|.+++.+++
T Consensus 380 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~ 459 (1230)
T 1u6g_C 380 ISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLT 459 (1230)
T ss_dssp HSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 8889999999999999999999987653 2234567777777799999999999999999
Q ss_pred Hhccccchh--HHHHhhHHHHHhhcCCCCc--hHHHHHHHHHHHHhhhhchHH---HHhhHHHHHHhhcCCCCccHHHHH
Q 015150 326 LLAPVMGSE--ITCSQLLPVVINASKDRVP--NIKFNVAKVLQSLIPIVDQSV---VEKSIRPCLVELSEDPDVDVRFFA 398 (412)
Q Consensus 326 ~l~~~~~~~--~~~~~il~~l~~~l~d~~~--~vR~~~~~~l~~l~~~~~~~~---~~~~i~~~l~~l~~d~~~~vr~~a 398 (412)
.++..++.. .+.+.++|.+...++|+.+ .+|..++..++.+....+++. +.+.++|.+.....|++..||..+
T Consensus 460 ~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~a 539 (1230)
T 1u6g_C 460 ELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEA 539 (1230)
T ss_dssp HHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHH
Confidence 998775532 4678999999999999876 899999999999987777653 567899999998999999999999
Q ss_pred HHHHHHhHHhhhC
Q 015150 399 TQALQSKDQVMMS 411 (412)
Q Consensus 399 ~~al~~~~~~~~~ 411 (412)
..+++.+++.+|.
T Consensus 540 l~~l~~l~~~~~~ 552 (1230)
T 1u6g_C 540 LLVTQQLVKVIRP 552 (1230)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988764
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.97 E-value=1.6e-27 Score=237.97 Aligned_cols=408 Identities=16% Similarity=0.203 Sum_probs=331.5
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch---hhhhhhHHHHHhhccCC
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVNFSQDK 78 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~---~~~~~l~~~l~~l~~d~ 78 (412)
+.+|..+..+++.++..++ +...+.+++.+...++++++.+|..|+.+++.++...+++ ...+.+++.+...+.|+
T Consensus 345 ~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~ 423 (861)
T 2bpt_A 345 WNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ 423 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS
T ss_pred CcHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 4689999999999999887 4556789999999999999999999999999999876533 23455888899999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH---H---HHHHhhhhh
Q 015150 79 SWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---E---LAIQHILPC 148 (412)
Q Consensus 79 ~~~vR~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~---~~~~~~~~~ 148 (412)
++.||..++.+++.++..++. ..+...++|.+.+.++|+ +.||..++.++..+++.+++ + .+...+++.
T Consensus 424 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~ 502 (861)
T 2bpt_A 424 SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDG 502 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 999999999999999988754 335577899999999887 99999999999999987652 1 344567777
Q ss_pred HHHhcc--CCcHHHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHhhcc---------------cChHHHHHHHHHHHH
Q 015150 149 VKELSS--DSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQ 209 (412)
Q Consensus 149 l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---------------~~~~vr~~~~~~l~~ 209 (412)
+.+.+. |.++.+|..++++++.++...+.+. +...++|.+.+.+.+ ....+|..++.+++.
T Consensus 503 L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~ 582 (861)
T 2bpt_A 503 LIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAA 582 (861)
T ss_dssp HHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHH
Confidence 778776 5558999999999999988877643 234566666665542 246788899999999
Q ss_pred HHHhhchh--hHHhhHHHHHHHHhcCCCc-hHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchhHHHHHHHHH
Q 015150 210 VNQVIGID--LLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANN 284 (412)
Q Consensus 210 i~~~~~~~--~~~~~~~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~ 284 (412)
++..+|.+ .+.+.+++.+...+++.++ .+|..++.+++.++...|... +.+.++|.+...++++++.+|..++..
T Consensus 583 l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~ 662 (861)
T 2bpt_A 583 VIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGF 662 (861)
T ss_dssp HHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 99888753 3356788888888888888 999999999999998887654 457799999999999999999999999
Q ss_pred HHHHHHHhChhh--hhhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCC------
Q 015150 285 VKRLAEEFGPDW--AMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRV------ 352 (412)
Q Consensus 285 l~~l~~~~~~~~--~~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~------ 352 (412)
++.+.+.+|... +...+++.+.+.+.+++ ..+|..++.+++.++..+|.. .|.+.++|.+...+..+.
T Consensus 663 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d 742 (861)
T 2bpt_A 663 IADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLE 742 (861)
T ss_dssp HHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHH
T ss_pred HHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChH
Confidence 999999887642 34678888888888765 789999999999999888776 467889999988876422
Q ss_pred -----chHHHHHHHHHHHHhhhhch--H---HHHhhHHHHHHhhcCCC----CccHHHHHHHHHHHhHHhh-hC
Q 015150 353 -----PNIKFNVAKVLQSLIPIVDQ--S---VVEKSIRPCLVELSEDP----DVDVRFFATQALQSKDQVM-MS 411 (412)
Q Consensus 353 -----~~vR~~~~~~l~~l~~~~~~--~---~~~~~i~~~l~~l~~d~----~~~vr~~a~~al~~~~~~~-~~ 411 (412)
..+|..++++++.+...++. . .+...+++.+...+.|+ +..||..|..+++.++..+ |.
T Consensus 743 ~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~ 816 (861)
T 2bpt_A 743 ALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCc
Confidence 46899999999999988772 2 24456777777777774 8899999999999999988 54
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.97 E-value=7.6e-28 Score=248.14 Aligned_cols=409 Identities=15% Similarity=0.131 Sum_probs=329.3
Q ss_pred chhHHHHHHHHHHHHHHhhhh--------hhHHHHHHHHHHhcc-CCchHHHHHHHHhHHHHhhccCch--hhhhhhHHH
Q 015150 2 PMVRRSAATNLGKFAATVEAA--------HLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPV 70 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~--------~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~~ 70 (412)
+.||..++.+++.++..++.. .+++.++|.+...+. ++++.+|..|+.++..++...+.. .+.+.+++.
T Consensus 100 ~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~ 179 (1230)
T 1u6g_C 100 EQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTC 179 (1230)
T ss_dssp SHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 578999999999999887754 368899999999888 478889999999999999766542 245678889
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC-hHHHHHHHHHHHHHHHHhhCHH--HHHHhhhh
Q 015150 71 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPE--LAIQHILP 147 (412)
Q Consensus 71 l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~ 147 (412)
+...+.|+++.||..++.+++.++...+... ...+++.+.+.+.+. ++.+|..++.+++.++...+.. .+...++|
T Consensus 180 l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~ 258 (1230)
T 1u6g_C 180 LLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIP 258 (1230)
T ss_dssp HGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999998776554 456777777766443 3578999999999999887653 23456889
Q ss_pred hHHHhccCCcHHHHHHHHHHHHhcCcccChh--HHHHhhHHHHHHhhcc-------------------------------
Q 015150 148 CVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKD------------------------------- 194 (412)
Q Consensus 148 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d------------------------------- 194 (412)
.+.+.++|.++.+|..++.+++.++...+.+ .+...++|.+.+.+.+
T Consensus 259 ~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 338 (1230)
T 1u6g_C 259 LVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDE 338 (1230)
T ss_dssp HHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccc
Confidence 9999999999999999999999988877654 2456677777665531
Q ss_pred ------cChHHHHHHHHHHHHHHHhhch--hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh-----------
Q 015150 195 ------EFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----------- 255 (412)
Q Consensus 195 ------~~~~vr~~~~~~l~~i~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----------- 255 (412)
..+.+|..++.++..+....+. ..+.+.++|.+...+.|.++.+|..++.++..+....+.
T Consensus 339 ~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 418 (1230)
T 1u6g_C 339 YSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAM 418 (1230)
T ss_dssp ------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC----------
T ss_pred cccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCcccc
Confidence 1246899999999999876553 345567788888888999999999999999988876642
Q ss_pred ----------hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh--hhhhhhhHHHHHhhhcCCch--HHHHHHH
Q 015150 256 ----------GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPHY--LYRMTIL 321 (412)
Q Consensus 256 ----------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~~~~~~~--~~r~~~~ 321 (412)
..+.+.++|.+.+.++|+++.+|.+++..++.++...+. ....+.++|.+.+.++|+++ .+|..++
T Consensus 419 ~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~ 498 (1230)
T 1u6g_C 419 EQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDAL 498 (1230)
T ss_dssp --CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHH
T ss_pred ccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHH
Confidence 223456778888889999999999999999999987543 12356789999999999875 8999999
Q ss_pred HHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch---------HHHHhhHHHHHHhhc--
Q 015150 322 QAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---------SVVEKSIRPCLVELS-- 387 (412)
Q Consensus 322 ~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---------~~~~~~i~~~l~~l~-- 387 (412)
..+..+....+.+ .+.+.++|.++..++|+++.||..++.+++.+...+++ ..+.+.++|.+...+
T Consensus 499 ~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~ 578 (1230)
T 1u6g_C 499 SCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA 578 (1230)
T ss_dssp HHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc
Confidence 9999998777765 37788999999999999999999999999999988776 256678899888876
Q ss_pred CCCCccHHHHHHHHHHHhHHhhhC
Q 015150 388 EDPDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 388 ~d~~~~vr~~a~~al~~~~~~~~~ 411 (412)
.|++.+||..+..+++.++...|+
T Consensus 579 ~d~~~~vr~~a~~~lg~L~~~~g~ 602 (1230)
T 1u6g_C 579 ADIDQEVKERAISCMGQIICNLGD 602 (1230)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHTGG
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCc
Confidence 788999999999999999998875
No 9
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.96 E-value=1.4e-26 Score=214.71 Aligned_cols=380 Identities=15% Similarity=0.140 Sum_probs=293.2
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhcc--------------Cchhhhhhh
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL--------------EPQDCVAHI 67 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~--------------~~~~~~~~l 67 (412)
+.+|++|.+.|..+...- ...++..++.++.. .+.++.+|..|+..+.+..... -++..+..+
T Consensus 15 ~~~r~~Ae~~L~~~~~~~-~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~i 91 (462)
T 1ibr_B 15 RLELEAAQKFLERAAVEN-LPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREV 91 (462)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHH
Confidence 578999999998866421 22344445554331 2236789999999999886431 122345557
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC--hHHHHHHHHHHHHHHHHhhCHH---HHH
Q 015150 68 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPE---LAI 142 (412)
Q Consensus 68 ~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~---~~~ 142 (412)
...++..+.++++.+ ..++.+++.++.....+..+++++|.+.+.+.++ ++.+|..++.+++.+++...++ .+.
T Consensus 92 k~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 170 (462)
T 1ibr_B 92 KNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS 170 (462)
T ss_dssp HHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH
T ss_pred HHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH
Confidence 777777888888888 9999999999988665556899999999999988 8999999999999999866332 334
Q ss_pred HhhhhhHHHhccCC--cHHHHHHHHHHHHhcCcccChhH----HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch
Q 015150 143 QHILPCVKELSSDS--SQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 216 (412)
Q Consensus 143 ~~~~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~ 216 (412)
+.+++.+...++|. ++.||..++++++.+...++... ..+.+++.+...+.++++.+|..++.++..+....+.
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~ 250 (462)
T 1ibr_B 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (462)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55888888888887 79999999999998776543221 2345678888888889999999999999999877553
Q ss_pred h--hHHh-hHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh-------------------C-hhh---HHHHHHHHHHHHh
Q 015150 217 D--LLSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-------------------G-VGF---FDDKLGALCMQWL 270 (412)
Q Consensus 217 ~--~~~~-~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-------------------~-~~~---~~~~l~~~l~~~l 270 (412)
. .... .+++.+...+++.++.+|..+++.+..++... . ... +.+.++|.+++.+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l 330 (462)
T 1ibr_B 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (462)
T ss_dssp GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH
Confidence 2 2235 78888888889999999999999888887653 0 011 2366888888877
Q ss_pred cC-------chhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhh
Q 015150 271 KD-------KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQL 340 (412)
Q Consensus 271 ~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~i 340 (412)
.+ .++.+|.+|..+++.+...+| +.....++|.+...+.+++|.+|.+++.+++.+++.++.+ .+...+
T Consensus 331 ~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~ 409 (462)
T 1ibr_B 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA 409 (462)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTH
T ss_pred HhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 43 457899999999999999998 4556778899999999999999999999999999876533 356789
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH----HHHhhHHHHHHhh
Q 015150 341 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVEL 386 (412)
Q Consensus 341 l~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~l 386 (412)
+|.+...++|+++.||..++++++.++..+++. .+.+.++|.|...
T Consensus 410 ~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~ 459 (462)
T 1ibr_B 410 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG 459 (462)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888763 2344555555543
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.96 E-value=3.5e-26 Score=228.69 Aligned_cols=407 Identities=16% Similarity=0.181 Sum_probs=320.2
Q ss_pred chhHHHHHHHHHHHHH------------Hhh--hhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhh
Q 015150 2 PMVRRSAATNLGKFAA------------TVE--AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHI 67 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~------------~~~--~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l 67 (412)
+.+|..++..|.+... .+. .+.....+.+.+...+.++++.+ ..++.+++.++....+...++.+
T Consensus 51 ~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~l 129 (876)
T 1qgr_A 51 QVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPEL 129 (876)
T ss_dssp HHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTH
T ss_pred HHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHH
Confidence 5689999999888652 111 12234445555666777777777 88899999999875554567889
Q ss_pred HHHHHhhccCC--ChHHHHHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCC--hHHHHHHHHHHHHHHHHhhCHH-
Q 015150 68 LPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPE- 139 (412)
Q Consensus 68 ~~~l~~l~~d~--~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~- 139 (412)
+|.+.+.+.++ ++.+|..++++++.++...+.+ .....+++.+.+.+.|+ ++.+|..+++++..+...++..
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 209 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 9999999999999999875422 23356788888888887 6899999999999987654432
Q ss_pred ---HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh--HHHH-hhHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150 140 ---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIE-QLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 213 (412)
Q Consensus 140 ---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~-~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~ 213 (412)
.+.+.+++.+...+.+.++.+|..+++++..++...++. .... .+++.+...+.+.++.+|..++..+..+++.
T Consensus 210 ~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 223457888888888999999999999999988765532 2234 7888888888898999999999888888754
Q ss_pred hch--------------------hh---HHhhHHHHHHHHhc-------CCCchHHHHHHHHhhHHHhhhChhhHHHHHH
Q 015150 214 IGI--------------------DL---LSQSLLPAIVELAE-------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 263 (412)
Q Consensus 214 ~~~--------------------~~---~~~~~~~~l~~~~~-------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 263 (412)
... .. ..+.++|.+.+.+. |.+|.+|.++..+++.++...|. ...+.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l 368 (876)
T 1qgr_A 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVL 368 (876)
T ss_dssp HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHH
T ss_pred HHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHH
Confidence 210 00 12456777776653 46799999999999999999885 4456789
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHhChh---hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch----hHH
Q 015150 264 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS----EIT 336 (412)
Q Consensus 264 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~----~~~ 336 (412)
|.+...+.|++|.+|.+|+.+++.+....+++ .+...++|.+...++|+++.+|.+++.+++.++..++. ..+
T Consensus 369 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T 1qgr_A 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence 99999999999999999999999998766633 23467889999999999999999999999999987764 257
Q ss_pred HHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc----------------hHHHHhhHHHHHHhhcCCC---CccHHHH
Q 015150 337 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD----------------QSVVEKSIRPCLVELSEDP---DVDVRFF 397 (412)
Q Consensus 337 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~----------------~~~~~~~i~~~l~~l~~d~---~~~vr~~ 397 (412)
.+.+++.++..+.|+ +.||..++++++.+....+ -..+.+.++|.+...+.++ +.++|..
T Consensus 449 l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~ 527 (876)
T 1qgr_A 449 LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS 527 (876)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence 788999999999986 8999999999999987765 1235578899998887765 4689999
Q ss_pred HHHHHHHhHHhhhC
Q 015150 398 ATQALQSKDQVMMS 411 (412)
Q Consensus 398 a~~al~~~~~~~~~ 411 (412)
+.++++.++..+|.
T Consensus 528 ~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 528 AYESLMEIVKNSAK 541 (876)
T ss_dssp HHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHCch
Confidence 99999999887764
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.96 E-value=1.6e-25 Score=223.91 Aligned_cols=406 Identities=14% Similarity=0.167 Sum_probs=305.7
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch---hhhhhhHHHHHhhccCC
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVNFSQDK 78 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~---~~~~~l~~~l~~l~~d~ 78 (412)
..+|++++.+++.++...+. ...+.+++.+...+.|+++.+|..|+.+++.++...+++ .....++|.+...++|+
T Consensus 342 ~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~ 420 (876)
T 1qgr_A 342 WNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 46899999999999998874 556788899999999999999999999999999887643 24456889999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC----------------H
Q 015150 79 SWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----------------P 138 (412)
Q Consensus 79 ~~~vR~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------------~ 138 (412)
++.||..++.+++.++...+. ..+...+++.+...+.|+ +.||..++.++..+++..+ -
T Consensus 421 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l 499 (876)
T 1qgr_A 421 SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCL 499 (876)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSS
T ss_pred CHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhh
Confidence 999999999999999987654 234567888898999886 8899999999999887653 1
Q ss_pred HHHHHhhhhhHHHhccCC---cHHHH------------------------------------------------------
Q 015150 139 ELAIQHILPCVKELSSDS---SQHVR------------------------------------------------------ 161 (412)
Q Consensus 139 ~~~~~~~~~~l~~~~~d~---~~~vr------------------------------------------------------ 161 (412)
..+...++|.+...+.+. +..+|
T Consensus 500 ~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~ 579 (876)
T 1qgr_A 500 SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFND 579 (876)
T ss_dssp TTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHH
Confidence 133455666666655432 23344
Q ss_pred --HHHHHHHHhcCcccC-hhH--HHHhhHHHHHHhhcccC--hHHHHHHHHHHHHHHHhhchh--hHHhhHHHHHHHHhc
Q 015150 162 --SALATVIMGMAPILG-KDA--TIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAE 232 (412)
Q Consensus 162 --~~~~~~l~~l~~~~~-~~~--~~~~l~~~l~~~l~d~~--~~vr~~~~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~ 232 (412)
..++.+++.++..+| ... +...++|.+...+++.. +.+|..++.+++.++...+.. .+.+.++|.+...+.
T Consensus 580 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~ 659 (876)
T 1qgr_A 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLK 659 (876)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Confidence 444455555554445 221 22456677777777654 478999999999988876643 334667888888888
Q ss_pred CC-CchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHHhChhh--hhhhhHHHH
Q 015150 233 DR-HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQV 305 (412)
Q Consensus 233 d~-~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l 305 (412)
+. ++.+|..++.+++.++...|... +.+.+++.+...+++ .+..+|..++.+++.++..+|.++ +...++|.+
T Consensus 660 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l 739 (876)
T 1qgr_A 660 NYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTL 739 (876)
T ss_dssp HCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 87 89999999999999998887543 346788888888876 457899999999999999888763 345677777
Q ss_pred HhhhcCCc-----------hHHHHHHHHHHHHhccccch------------hHHHHhhHHHHHhhcCCC--CchHHHHHH
Q 015150 306 LEMINNPH-----------YLYRMTILQAISLLAPVMGS------------EITCSQLLPVVINASKDR--VPNIKFNVA 360 (412)
Q Consensus 306 ~~~~~~~~-----------~~~r~~~~~~l~~l~~~~~~------------~~~~~~il~~l~~~l~d~--~~~vR~~~~ 360 (412)
...+.++. ..+|..++.++..+...++. ..+...+++.+.....|+ ...||..++
T Consensus 740 ~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~ 819 (876)
T 1qgr_A 740 QQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAA 819 (876)
T ss_dssp HHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHH
T ss_pred HHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 77666442 27899999988877665542 135566777776666777 689999999
Q ss_pred HHHHHHhhhhch-H--HH-HhhHHHHHHh-hcCCCCccHHHHHHHHHHHhHHhh
Q 015150 361 KVLQSLIPIVDQ-S--VV-EKSIRPCLVE-LSEDPDVDVRFFATQALQSKDQVM 409 (412)
Q Consensus 361 ~~l~~l~~~~~~-~--~~-~~~i~~~l~~-l~~d~~~~vr~~a~~al~~~~~~~ 409 (412)
.+++.+...+|. . .+ .+.+++.+.. .+.|++.++|..|..|++.+.+.-
T Consensus 820 ~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 820 GLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp HHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhh
Confidence 999999998877 3 22 4456666666 788999999999999999998754
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.94 E-value=1.3e-24 Score=200.76 Aligned_cols=379 Identities=13% Similarity=0.080 Sum_probs=291.9
Q ss_pred HHHHHHhccCCchHHHHHHHHhHHHHhhc-cCc---hhhhh-hhHHHHHhhccCC-ChHHHHHHHHHHHHHHHHhC---C
Q 015150 29 MSIFEELTQDDQDSVRLLAVEGCGALGKL-LEP---QDCVA-HILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG---P 99 (412)
Q Consensus 29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~-~~~---~~~~~-~l~~~l~~l~~d~-~~~vR~~~~~~l~~l~~~~~---~ 99 (412)
++.+.+.++++++.+|..|+..+..+... ..+ ..... .++|.+.++++++ ++.+|..++.+|+.++.... .
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 66777778888999999999999998652 222 12233 6899999988887 89999999999999885211 1
Q ss_pred CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH---HHHHHhhhhhHHHhccC-CcHHHHHHHHHHHHhcCccc
Q 015150 100 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPIL 175 (412)
Q Consensus 100 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~ 175 (412)
.......+|.+.++++++++.+|..|+.+|+.++...+. ......++|.+.+++.+ .++.+|..++++++.++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 112256899999999999999999999999999874321 12334688999999884 78999999999999998543
Q ss_pred C---hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHH
Q 015150 176 G---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 249 (412)
Q Consensus 176 ~---~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l 249 (412)
+ .......++|.+.++++++++.+|..++.++..++..... ......++|.+..++.++++.+|..++.+++.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 1 1222367899999999999999999999999998764321 122345789999999999999999999999988
Q ss_pred HhhhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHH
Q 015150 250 ASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQA 323 (412)
Q Consensus 250 ~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~ 323 (412)
+...+.. .....++|.+..++.++++.+|..|+.+++.+...... ......++|.+.+.+.++++.+|..++.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 7643221 12234789999999999999999999999998752111 11235788999999999999999999999
Q ss_pred HHHhccccchh----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH---------HHHhhH-----HHHHHh
Q 015150 324 ISLLAPVMGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------VVEKSI-----RPCLVE 385 (412)
Q Consensus 324 l~~l~~~~~~~----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---------~~~~~i-----~~~l~~ 385 (412)
++.++...+.+ .....++|.++.+++++++.+|..++.+|..+....+.. .+...+ ++.+..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 421 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence 99998654333 234569999999999999999999999999997643321 122223 677888
Q ss_pred hcCCCCccHHHHHHHHHHHhHH
Q 015150 386 LSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 386 l~~d~~~~vr~~a~~al~~~~~ 407 (412)
+.++++.+|+..|..++..+..
T Consensus 422 l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 422 LQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHHCC
Confidence 8899999999999999987753
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.94 E-value=2.9e-24 Score=202.22 Aligned_cols=380 Identities=10% Similarity=0.067 Sum_probs=295.6
Q ss_pred HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc----hhhhhhhHHHHHhhccCC-ChHHHHHHHHHHHHHHHHhC---
Q 015150 27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG--- 98 (412)
Q Consensus 27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~----~~~~~~l~~~l~~l~~d~-~~~vR~~~~~~l~~l~~~~~--- 98 (412)
..++.+...+.++++.+|..|+..+..++..... ......++|.+.+++.++ ++.+|..++.+|+.++....
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3466666777888889999999999998765322 123356899999999987 89999999999999886211
Q ss_pred CCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC---HHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc
Q 015150 99 PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL 175 (412)
Q Consensus 99 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 175 (412)
........+|.+.+++.++++.+|..|+.+|+.++...+ .......++|.+..++.+.++.+|..+++++..++...
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 111224578999999999999999999999999986421 22334568999999999999999999999999998543
Q ss_pred ---ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHH
Q 015150 176 ---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 249 (412)
Q Consensus 176 ---~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l 249 (412)
........++|.+..++.++++.+|..++.+|..++..... ......++|.+..++.++++.+|..++.+++.+
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 12234467899999999999999999999999999754221 122246789999999999999999999999988
Q ss_pred HhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh----hhhhhhHHHHHhhhcCCchHHHHHHHH
Q 015150 250 ASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMINNPHYLYRMTILQ 322 (412)
Q Consensus 250 ~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~~~~~~r~~~~~ 322 (412)
+...+. ......++|.+..+|.++++.+|..|+.+++.+.... .+ .+...++|.+..++.++++.+|..++.
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 405 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACW 405 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 753221 1223458899999999999999999999999987521 22 123568899999999999999999999
Q ss_pred HHHHhccccch--h----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--------------HHHhhHHHH
Q 015150 323 AISLLAPVMGS--E----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------------VVEKSIRPC 382 (412)
Q Consensus 323 ~l~~l~~~~~~--~----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--------------~~~~~i~~~ 382 (412)
+++.++...+. + .....++|.+..++.++++.+|..++.+|..+....... ......++.
T Consensus 406 aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 485 (530)
T 1wa5_B 406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 485 (530)
T ss_dssp HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHH
Confidence 99999865433 2 234468999999999999999999999999997654321 112346788
Q ss_pred HHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 383 LVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 383 l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
|..+..+++.+|+..|..++..+..
T Consensus 486 L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 486 IFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 8899999999999999999987654
No 14
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.94 E-value=3.8e-24 Score=198.33 Aligned_cols=346 Identities=15% Similarity=0.188 Sum_probs=269.4
Q ss_pred chhHHHHHHHHHHHHHHh------------h--hhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhh
Q 015150 2 PMVRRSAATNLGKFAATV------------E--AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHI 67 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~------------~--~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l 67 (412)
+.+|+.++..|.++.+.. . .+...+.+...+...+.++++.+ ..++.+++.++....++..++.+
T Consensus 51 ~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~l 129 (462)
T 1ibr_B 51 QVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPEL 129 (462)
T ss_dssp HHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTH
T ss_pred hHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHH
Confidence 578999999999986421 1 12234456666666677777778 88899999999886554467889
Q ss_pred HHHHHhhccCC--ChHHHHHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCC--hHHHHHHHHHHHHHHHHhhCHH-
Q 015150 68 LPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPE- 139 (412)
Q Consensus 68 ~~~l~~l~~d~--~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~- 139 (412)
+|.+.+.++++ ++.+|..++.+|+.+++....+ ...+.+++.+..+++|+ ++.||..|+.++..+...+...
T Consensus 130 l~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 209 (462)
T 1ibr_B 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209 (462)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888 9999999999999999876322 23356889999999998 7999999999999876554322
Q ss_pred ---HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh--HHHH-hhHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150 140 ---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIE-QLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 213 (412)
Q Consensus 140 ---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~-~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~ 213 (412)
.+.+.+++.+.....+.++.+|..+++++..++...+.. .... .+++.+...++|.++++|..++..+..++..
T Consensus 210 ~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 233456788888889999999999999999988665432 2234 7888888888999999999999988888765
Q ss_pred hc--------------------h---hhHHhhHHHHHHHHhc-------CCCchHHHHHHHHhhHHHhhhChhhHHHHHH
Q 015150 214 IG--------------------I---DLLSQSLLPAIVELAE-------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 263 (412)
Q Consensus 214 ~~--------------------~---~~~~~~~~~~l~~~~~-------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 263 (412)
.. . ....+.++|.+.+.+. |.+|.+|.++..+++.++..+|. ...+.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~ 368 (462)
T 1ibr_B 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVL 368 (462)
T ss_dssp HHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHH
T ss_pred HHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHH
Confidence 30 0 0112567777777663 35799999999999999999984 5567799
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHhChh---hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh----HH
Q 015150 264 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE----IT 336 (412)
Q Consensus 264 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~----~~ 336 (412)
|.+...++|++|.+|.+|+.+++.+.+..+.+ .....++|.+...++|+++.+|.+++.+++.++..++.. .+
T Consensus 369 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (462)
T 1ibr_B 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (462)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTT
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 99999999999999999999999999755432 234679999999999999999999999999999888763 46
Q ss_pred HHhhHHHHHhhcC
Q 015150 337 CSQLLPVVINASK 349 (412)
Q Consensus 337 ~~~il~~l~~~l~ 349 (412)
.+.++|.+++.++
T Consensus 449 l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 449 LAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhc
Confidence 6677777776653
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.93 E-value=4e-23 Score=190.81 Aligned_cols=367 Identities=11% Similarity=0.075 Sum_probs=280.4
Q ss_pred chhHHHHHHHHHHHHHHh-hh---hhhHH-HHHHHHHHhccCC-chHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHH
Q 015150 2 PMVRRSAATNLGKFAATV-EA---AHLKS-EIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIV 72 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~-~~---~~~~~-~l~~~l~~l~~~~-~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~ 72 (412)
+.+|..++..|..+.... .+ ..+.. .++|.+..+++++ ++.+|..|+.++..++...++ ......++|.+.
T Consensus 34 ~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 113 (450)
T 2jdq_A 34 PEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFI 113 (450)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHH
Confidence 678999999999987521 11 12233 6888888888887 889999999999999875322 122356899999
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCH---HHHHHhh
Q 015150 73 NFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNP---ELAIQHI 145 (412)
Q Consensus 73 ~l~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~ 145 (412)
++++++++.+|..++.+|+.++.... .......++|.+.+++.+ +++.+|..++.+++.++...++ ......+
T Consensus 114 ~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 193 (450)
T 2jdq_A 114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPC 193 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGG
T ss_pred HHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 99999999999999999999986321 111224578999999985 7899999999999999864311 1223668
Q ss_pred hhhHHHhccCCcHHHHHHHHHHHHhcCcccChh---HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhH
Q 015150 146 LPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLL 219 (412)
Q Consensus 146 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~ 219 (412)
+|.+.+++.+.++.+|..+++++..++...... .....++|.+..++.++++.+|..++.+++.++...+. ...
T Consensus 194 l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 273 (450)
T 2jdq_A 194 LNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVIL 273 (450)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHH
Confidence 899999999999999999999999998643221 12246889999999999999999999999999765321 112
Q ss_pred HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh
Q 015150 220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 296 (412)
Q Consensus 220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 296 (412)
...++|.+.+++.++++.+|..++.+++.++..... ......++|.++.++.++++.||..|+.+++.+.....++.
T Consensus 274 ~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 353 (450)
T 2jdq_A 274 NCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQ 353 (450)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHH
Confidence 236889999999999999999999999998753211 11224678899999999999999999999999987543332
Q ss_pred ----hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---------HHHHhh-----HHHHHhhcCCCCchHHHH
Q 015150 297 ----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---------ITCSQL-----LPVVINASKDRVPNIKFN 358 (412)
Q Consensus 297 ----~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---------~~~~~i-----l~~l~~~l~d~~~~vR~~ 358 (412)
....++|.+..++.++++.+|..++.++..++...+.. .+...+ ++.+..+..++++.||..
T Consensus 354 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~ 433 (450)
T 2jdq_A 354 IKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQK 433 (450)
T ss_dssp HHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHH
Confidence 23468899999999999999999999999997643321 223333 566777778888889988
Q ss_pred HHHHHHHHhh
Q 015150 359 VAKVLQSLIP 368 (412)
Q Consensus 359 ~~~~l~~l~~ 368 (412)
+..++..+..
T Consensus 434 a~~~l~~~~~ 443 (450)
T 2jdq_A 434 AFDLIEHYFG 443 (450)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHCC
Confidence 8888887763
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.92 E-value=1.9e-22 Score=189.83 Aligned_cols=378 Identities=12% Similarity=0.089 Sum_probs=292.8
Q ss_pred HHHHHHhccCCchHHHHHHHHhHHHHhhccC-c---hhhhhhhHHHHHhhccCCC-hHHHHHHHHHHHHHHHHhCC---C
Q 015150 29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLE-P---QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGP---E 100 (412)
Q Consensus 29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~-~---~~~~~~l~~~l~~l~~d~~-~~vR~~~~~~l~~l~~~~~~---~ 100 (412)
+|.+..++.++++.+|..|+..+..++.... + ......++|.+.+++.+++ +.+|..++.+|+.++..... .
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5666777788889999999999999976543 1 2234568999999998876 99999999999999862110 1
Q ss_pred CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH---HHHHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcCccc-
Q 015150 101 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPIL- 175 (412)
Q Consensus 101 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~- 175 (412)
......+|.+..++.++++.+|..|+.+|+.++...+. .......+|.+..++ .+.++.++..+++++..++...
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 12235899999999999999999999999999864222 123345788888888 6789999999999999998653
Q ss_pred -ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHh
Q 015150 176 -GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 251 (412)
Q Consensus 176 -~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 251 (412)
........++|.+..++.+++++++..++.+|..++..... ......++|.+..++.++++.+|..++.+++.++.
T Consensus 236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 22233467899999999999999999999999998754321 11234578999999999999999999999998876
Q ss_pred hhCh---hhHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHhChh----hhhhhhHHHHHhhhcCCchHHHHHHHHH
Q 015150 252 QLGV---GFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMINNPHYLYRMTILQA 323 (412)
Q Consensus 252 ~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~~~~~~r~~~~~~ 323 (412)
.... ......++|.+..++.++ ++.+|..|+.+++.+... ..+ .....++|.+..++.+.++.+|..++.+
T Consensus 316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a 394 (528)
T 4b8j_A 316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA 394 (528)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 3321 112234688999999998 999999999999999852 221 1234688999999998899999999999
Q ss_pred HHHhccccchhH----HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--------------HHHhhHHHHHHh
Q 015150 324 ISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------------VVEKSIRPCLVE 385 (412)
Q Consensus 324 l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--------------~~~~~i~~~l~~ 385 (412)
++.++...+.+. ....+++.+..++.++++.++..++.+|..+....+.. ......++.+..
T Consensus 395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 474 (528)
T 4b8j_A 395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN 474 (528)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH
Confidence 999986533331 23468999999999999999999999999997644321 112345677888
Q ss_pred hcCCCCccHHHHHHHHHHHhHH
Q 015150 386 LSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 386 l~~d~~~~vr~~a~~al~~~~~ 407 (412)
+.++++.+|+..|...+..+..
T Consensus 475 L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 475 LQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp GGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHcCCCHHHHHHHHHHHHHHCC
Confidence 8999999999999999987654
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=2.2e-22 Score=189.44 Aligned_cols=345 Identities=13% Similarity=0.088 Sum_probs=271.2
Q ss_pred hhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCC-hHHHHHHHHHHHHHHHHhhCH-
Q 015150 65 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNP- 138 (412)
Q Consensus 65 ~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~- 138 (412)
...++.+.+.++++++.+|..++..|..+........ ....++|.+.+++.++ ++.+|..|+.+|..++...+.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 3457777888888899999999999998865332221 2246899999999997 899999999999999874321
Q ss_pred --HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC---hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150 139 --ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 213 (412)
Q Consensus 139 --~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~ 213 (412)
.......+|.+..++.++++.+|..++++++.++.... ........+|.+..++.+.++.+|..++.+|..++..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 22335688999999999999999999999999985421 1122346889999999999999999999999999865
Q ss_pred hc---hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 015150 214 IG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKR 287 (412)
Q Consensus 214 ~~---~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 287 (412)
.+ .......++|.+..++.++++.+|..++.++..++..... ......++|.+..++.++++.+|..|+.+++.
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 31 1233467899999999999999999999999998864321 11223578899999999999999999999999
Q ss_pred HHHHhC---hhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHH
Q 015150 288 LAEEFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAK 361 (412)
Q Consensus 288 l~~~~~---~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~ 361 (412)
+....+ ...+...++|.+..++.++++.+|..++.+++.++...... .+...++|.++.++.++++.+|..+++
T Consensus 326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 405 (530)
T 1wa5_B 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACW 405 (530)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 875321 11223468899999999999999999999999998643321 233578999999999999999999999
Q ss_pred HHHHHhhhhch--H----HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150 362 VLQSLIPIVDQ--S----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409 (412)
Q Consensus 362 ~l~~l~~~~~~--~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~ 409 (412)
+|+.++...++ + .....++|.|..++.+++++||..+..++..+....
T Consensus 406 aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 99999875433 2 234568999999999999999999999999987643
No 18
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.92 E-value=1.5e-21 Score=185.23 Aligned_cols=388 Identities=14% Similarity=0.160 Sum_probs=259.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHH
Q 015150 3 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRV 82 (412)
Q Consensus 3 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~v 82 (412)
.+|+.+...+..+++..+ .....+.+.+.+-++|+++.+|..|+.+++.+. .......+.|.+.+++.|+++.|
T Consensus 64 ~~Krl~yl~l~~~~~~~~--e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~V 137 (591)
T 2vgl_B 64 ELKKLVYLYLMNYAKSQP--DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYV 137 (591)
T ss_dssp HHHHHHHHHHHHHHHHSH--HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHH
T ss_pred HHHHHHHHHHHHHcccCc--hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHH
Confidence 455555555555554211 112223455555566666666666666655553 22245556666666666666666
Q ss_pred HHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC-------------------------
Q 015150 83 RYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN------------------------- 137 (412)
Q Consensus 83 R~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~------------------------- 137 (412)
|+.|+.++.++....+.......+++.+.++++|+++.|+..|+.+|..++..-+
T Consensus 138 Rk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~ 217 (591)
T 2vgl_B 138 RKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEW 217 (591)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCch
Confidence 6666666666666333222223566666666666666666666666666654321
Q ss_pred ---------------HHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc--ChhH---HHHhhHHHHHHhhcccCh
Q 015150 138 ---------------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL--GKDA---TIEQLLPIFLSLLKDEFP 197 (412)
Q Consensus 138 ---------------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~---~~~~l~~~l~~~l~d~~~ 197 (412)
++.....+++.+..++++.++.|+..+++++..+...+ +.+. ....+.+.+..++ ++++
T Consensus 218 ~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~ 296 (591)
T 2vgl_B 218 GQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEP 296 (591)
T ss_dssp HHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCc
Confidence 01122446677777888999999999999999987644 2121 2235556666555 4688
Q ss_pred HHHHHHHHHHHHHHHhhch--------------h--hH----------------HhhHHHHHHHHhcCCCchHHHHHHHH
Q 015150 198 DVRLNIISKLDQVNQVIGI--------------D--LL----------------SQSLLPAIVELAEDRHWRVRLAIIEY 245 (412)
Q Consensus 198 ~vr~~~~~~l~~i~~~~~~--------------~--~~----------------~~~~~~~l~~~~~d~~~~vr~~~~~~ 245 (412)
++|..++.++..+....+. + .+ .+.+++.+..++++.++.+|..++..
T Consensus 297 ~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~a 376 (591)
T 2vgl_B 297 EVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRA 376 (591)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999998888653110 0 00 13456677778888899999999999
Q ss_pred hhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcC-CchHHHHHHHHHH
Q 015150 246 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-PHYLYRMTILQAI 324 (412)
Q Consensus 246 l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l 324 (412)
++.++..++. ..+.+++.+++++++....++..++..+..++...+.. .+.+++.+.+.+.+ ..+.+|.++++++
T Consensus 377 I~~la~~~~~--~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~~~~~~wil 452 (591)
T 2vgl_B 377 IGRCAIKVEQ--SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDARAAMIWIV 452 (591)
T ss_dssp HHHHHTTCHH--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHHHHHHHHHH
T ss_pred HHHHHHhChh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999887643 24668889999999999999999999999888765432 35567777777764 5578899999999
Q ss_pred HHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCC-CCccHHHHHHHHHH
Q 015150 325 SLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSED-PDVDVRFFATQALQ 403 (412)
Q Consensus 325 ~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~al~ 403 (412)
|+.+..... ...++..+.+.+.+.++.||..++.++.+++...+.. ..+.+...+.....| .|.+||..|...+.
T Consensus 453 Gey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 453 GEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence 999877653 2466777777777888999999999999998765432 123344455555566 67899999998776
Q ss_pred Hh
Q 015150 404 SK 405 (412)
Q Consensus 404 ~~ 405 (412)
-+
T Consensus 529 ll 530 (591)
T 2vgl_B 529 LL 530 (591)
T ss_dssp TT
T ss_pred HH
Confidence 55
No 19
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.90 E-value=4.1e-21 Score=182.26 Aligned_cols=367 Identities=14% Similarity=0.106 Sum_probs=246.1
Q ss_pred HHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchH
Q 015150 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV 107 (412)
Q Consensus 28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 107 (412)
+.+.+.+++++++..+|+.+...+..+++.. + +....+.+.+.+.++|+++.+|..++.+++.+. .......+.
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~-e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~ 123 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-P-DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLC 123 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-H-HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-c-hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHH
Confidence 3444556789999999999988888887652 2 233456778888899999999999999998875 444567899
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh-------H-
Q 015150 108 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD-------A- 179 (412)
Q Consensus 108 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-------~- 179 (412)
|.+.+++.|+++.||+.|+.++..+.+..++......+++.+.++++|+++.|+..++.+++.++..-+.. .
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~ 203 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQN 203 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHH
Confidence 99999999999999999999999999865543333568899999999999999999999999987643211 0
Q ss_pred --------------------------------HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhh--chhhH---Hhh
Q 015150 180 --------------------------------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI--GIDLL---SQS 222 (412)
Q Consensus 180 --------------------------------~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~--~~~~~---~~~ 222 (412)
....+++.+..++++.++.|+..+++++..+.... +++.+ .+.
T Consensus 204 ~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~ 283 (591)
T 2vgl_B 204 INKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKK 283 (591)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHH
T ss_pred HHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 01235556666677888899999999988886543 12211 234
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh--------------------------------hHHHHHHHHHHHHh
Q 015150 223 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--------------------------------FFDDKLGALCMQWL 270 (412)
Q Consensus 223 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--------------------------------~~~~~l~~~l~~~l 270 (412)
+.+.+..+. ++++.+|..++.++..+....+.. .-.+.+++.+..++
T Consensus 284 ~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l 362 (591)
T 2vgl_B 284 LAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYA 362 (591)
T ss_dssp THHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHT
T ss_pred HHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHH
Confidence 455555554 477888888888888777542110 00123445555566
Q ss_pred cCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcC-
Q 015150 271 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK- 349 (412)
Q Consensus 271 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~- 349 (412)
.+.++++|..++.+++.++..++.. .+.+++.+.+++.+....++..++..+..+....+.. ...+++.+...+.
T Consensus 363 ~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~ 438 (591)
T 2vgl_B 363 TEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDS 438 (591)
T ss_dssp TSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTT
T ss_pred hcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHh
Confidence 6666667776766666666554322 2445566666666666566666666666655433321 2345555666554
Q ss_pred CCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150 350 DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 350 d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 408 (412)
+..+.+|..+++++|+++....+. ..++..+.....+.++.||..+..++.++...
T Consensus 439 ~~~~~~~~~~~wilGey~~~~~~~---~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~ 494 (591)
T 2vgl_B 439 LDEPDARAAMIWIVGEYAERIDNA---DELLESFLEGFHDESTQVQLTLLTAIVKLFLK 494 (591)
T ss_dssp CCSHHHHHHHHHHHHTTCTTCTTH---HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHcccccccCH---HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 345667777777777776554321 24444444444556677777777777766543
No 20
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=4.1e-21 Score=181.05 Aligned_cols=404 Identities=13% Similarity=0.066 Sum_probs=283.3
Q ss_pred chhHHHHHHHHHHHHHHhhhh-hhH--HHHHHHHHHhcc-CCchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhc
Q 015150 2 PMVRRSAATNLGKFAATVEAA-HLK--SEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFS 75 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~-~~~--~~l~~~l~~l~~-~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~ 75 (412)
|.+|..++..+..++..-... ... ...++.+.+++. ++++.+|..++..+..++..-.. .......+|.+.+++
T Consensus 31 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL 110 (529)
T 1jdh_A 31 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 110 (529)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHH
Confidence 678999999999998643321 111 245666666664 45788999999999988754211 122335888999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH--------------
Q 015150 76 QDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-------------- 138 (412)
Q Consensus 76 ~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------------- 138 (412)
+++++.+|..++.+|.+++....... .....+|.+.+++.++++.++..+..+|..++...++
T Consensus 111 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L 190 (529)
T 1jdh_A 111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 190 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence 99999999999999999987533211 1346789999999999999999888888766531100
Q ss_pred -------------------------------HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHH
Q 015150 139 -------------------------------ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI 187 (412)
Q Consensus 139 -------------------------------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 187 (412)
.......++.+..++.+.++.++..+++++..++...+........+|.
T Consensus 191 ~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~ 270 (529)
T 1jdh_A 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGT 270 (529)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHH
T ss_pred HHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHH
Confidence 0011235677777788888889999999888887654333333578899
Q ss_pred HHHhhcccChHHHHHHHHHHHHHHHhhc---hhhHHhhHHHHHHHHhcC--CCchHHHHHHHHhhHHHhhhCh------h
Q 015150 188 FLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV------G 256 (412)
Q Consensus 188 l~~~l~d~~~~vr~~~~~~l~~i~~~~~---~~~~~~~~~~~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~------~ 256 (412)
+.+++.++++++|..++.+|..+...-. ........+|.+.+++.+ .++.++..++.+++.++...+. .
T Consensus 271 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 350 (529)
T 1jdh_A 271 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 350 (529)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 9999999999999999999999876421 111223467888887765 3489999999999988654322 1
Q ss_pred hHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHhCh--hhhhhhhHHHHHhhhcCCchHHHHHHHHHH---------
Q 015150 257 FFDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPHYLYRMTILQAI--------- 324 (412)
Q Consensus 257 ~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l--------- 324 (412)
......+|.+.+++.+++ +.+|..++.+++.+...-.. ......++|.+.+.+.++++.+|..+++++
T Consensus 351 i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~ 430 (529)
T 1jdh_A 351 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 430 (529)
T ss_dssp HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTB
T ss_pred HHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccc
Confidence 122345788899999876 58999999999988752211 122346788888888877777776555444
Q ss_pred -------------HHhccccch--hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh--hchHHHHhhHHHHHHhhc
Q 015150 325 -------------SLLAPVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI--VDQSVVEKSIRPCLVELS 387 (412)
Q Consensus 325 -------------~~l~~~~~~--~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~--~~~~~~~~~i~~~l~~l~ 387 (412)
..++..... .......+|.+..++.|+++++|..++.+++.+... ..........++.|..++
T Consensus 431 ~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~ 510 (529)
T 1jdh_A 431 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 510 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGG
T ss_pred cHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHh
Confidence 434322111 122345779999999999999999999999998743 111123456789999999
Q ss_pred CCCCccHHHHHHHHHHHh
Q 015150 388 EDPDVDVRFFATQALQSK 405 (412)
Q Consensus 388 ~d~~~~vr~~a~~al~~~ 405 (412)
.|++.+||..|..++..+
T Consensus 511 ~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 511 HSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp GCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 999999999999999876
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.90 E-value=6.7e-21 Score=179.32 Aligned_cols=368 Identities=11% Similarity=0.095 Sum_probs=282.3
Q ss_pred chhHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHhccCCc-hHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHh
Q 015150 2 PMVRRSAATNLGKFAATVE----AAHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVN 73 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~~~~-~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~ 73 (412)
|.+|..|+..+..++.... .......++|.+..++.+++ +.+|..|+.+|+.++...+. .......+|.+..
T Consensus 88 ~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 167 (528)
T 4b8j_A 88 NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 167 (528)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHH
Confidence 5788999999998876432 12244557888888888776 89999999999999975322 1223358899999
Q ss_pred hccCCChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhc-CCChHHHHHHHHHHHHHHHHhh--CHHHHHHhhhh
Q 015150 74 FSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRIL--NPELAIQHILP 147 (412)
Q Consensus 74 l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~ 147 (412)
++.++++.+|..++.+|+.++..... .......+|.+..++ ++.++.++..++.+|..++... ........++|
T Consensus 168 lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~ 247 (528)
T 4b8j_A 168 LLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALP 247 (528)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 99999999999999999999853111 111234688888988 7889999999999999998763 22344567899
Q ss_pred hHHHhccCCcHHHHHHHHHHHHhcCcccChh---HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHh
Q 015150 148 CVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQ 221 (412)
Q Consensus 148 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~ 221 (412)
.+..++.+.++.++..++.+++.++...... .....++|.+..++.++++.+|..++.+|+.++..... ..+..
T Consensus 248 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 327 (528)
T 4b8j_A 248 ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDH 327 (528)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 9999999999999999999999998643321 12246889999999999999999999999999764221 12234
Q ss_pred hHHHHHHHHhcCC-CchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh
Q 015150 222 SLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297 (412)
Q Consensus 222 ~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 297 (412)
.++|.+..++.++ ++.+|..++.+++.++..... ......++|.++.++.+.++.+|..|+.+|+.+....+++..
T Consensus 328 ~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 407 (528)
T 4b8j_A 328 QALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQI 407 (528)
T ss_dssp THHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 5789999999998 999999999999999863211 112235678999999999999999999999999876433321
Q ss_pred ----hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---------HH-----HHhhHHHHHhhcCCCCchHHHHH
Q 015150 298 ----MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---------IT-----CSQLLPVVINASKDRVPNIKFNV 359 (412)
Q Consensus 298 ----~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---------~~-----~~~il~~l~~~l~d~~~~vR~~~ 359 (412)
...+++.+..++.++++.++..++.++..+....... .+ ....+..+..+..++++.++..+
T Consensus 408 ~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a 487 (528)
T 4b8j_A 408 KYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKA 487 (528)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHH
Confidence 2468899999999999999999999999997544221 11 12345667788889999999999
Q ss_pred HHHHHHHhhh
Q 015150 360 AKVLQSLIPI 369 (412)
Q Consensus 360 ~~~l~~l~~~ 369 (412)
...+..++..
T Consensus 488 ~~il~~~~~~ 497 (528)
T 4b8j_A 488 VKILEAYWMD 497 (528)
T ss_dssp HHHHHHHCC-
T ss_pred HHHHHHHCCC
Confidence 9999988754
No 22
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=3.8e-20 Score=178.03 Aligned_cols=406 Identities=14% Similarity=0.074 Sum_probs=288.9
Q ss_pred chhHHHHHHHHHHHHHHhhhh-hh--HHHHHHHHHHhccC-CchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhc
Q 015150 2 PMVRRSAATNLGKFAATVEAA-HL--KSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFS 75 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~-~~--~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~ 75 (412)
|.+|..++.+|+.++...... .. ....++.+.+.+.+ +++.+|..|+..|..++..-.. .......++.+.+++
T Consensus 28 ~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL 107 (644)
T 2z6h_A 28 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 107 (644)
T ss_dssp HHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHH
Confidence 678999999999998754321 11 12456666666654 4788999999999887754211 122335888999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH--------------
Q 015150 76 QDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-------------- 138 (412)
Q Consensus 76 ~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------------- 138 (412)
+++++.+|..++.+|.+++....... .....+|.+.+++.++++.++..++.+|..++...++
T Consensus 108 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~L 187 (644)
T 2z6h_A 108 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 187 (644)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHH
Confidence 99999999999999999987542211 1356789999999998888998888888777641100
Q ss_pred -------------------------------HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHH
Q 015150 139 -------------------------------ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI 187 (412)
Q Consensus 139 -------------------------------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 187 (412)
.......++.+.+++.+.+..++..++.++..++...........++|.
T Consensus 188 v~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~ 267 (644)
T 2z6h_A 188 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGT 267 (644)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHH
Confidence 0111235667777777788888888888888887654333333578899
Q ss_pred HHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCC--CchHHHHHHHHhhHHHhhhChh------
Q 015150 188 FLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVG------ 256 (412)
Q Consensus 188 l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~------ 256 (412)
+..+++++++++|..++.+|..+...-.. .......++.+.+++.+. .+.++..++.+++.++...+..
T Consensus 268 Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~ 347 (644)
T 2z6h_A 268 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 347 (644)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 99999999999999999999988754211 112234678888887763 3799999999999887543321
Q ss_pred hHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHhCh--hhhhhhhHHHHHhhhcCCc--------------------
Q 015150 257 FFDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPH-------------------- 313 (412)
Q Consensus 257 ~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~~~~~~-------------------- 313 (412)
......+|.+.++|.+++ +.+|..|+.+++.+...-.. ......++|.+.+++.+.+
T Consensus 348 v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~ 427 (644)
T 2z6h_A 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427 (644)
T ss_dssp HHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSS
T ss_pred HHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccc
Confidence 122346888999998875 68999999999988742211 1223457777777766533
Q ss_pred --hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc--hHHHHhhHHHHHHhhc
Q 015150 314 --YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSVVEKSIRPCLVELS 387 (412)
Q Consensus 314 --~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~--~~~~~~~i~~~l~~l~ 387 (412)
..++..++.++..++..-... ......+|.+..++.++++++|..++.+|..+...-. ........++.|..++
T Consensus 428 ~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll 507 (644)
T 2z6h_A 428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 507 (644)
T ss_dssp CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHH
Confidence 456667777777776433221 1244688999999999999999999999999875311 1122345678899999
Q ss_pred CCCCccHHHHHHHHHHHhHH
Q 015150 388 EDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 388 ~d~~~~vr~~a~~al~~~~~ 407 (412)
.+++++||..|..+++.+..
T Consensus 508 ~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 508 HSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp TCSCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998865
No 23
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=2.1e-20 Score=182.61 Aligned_cols=406 Identities=14% Similarity=0.075 Sum_probs=287.3
Q ss_pred chhHHHHHHHHHHHHHHhhhh-hh--HHHHHHHHHHhcc-CCchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhc
Q 015150 2 PMVRRSAATNLGKFAATVEAA-HL--KSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFS 75 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~-~~--~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~ 75 (412)
+.||..++.+|+.++...... .+ .+.+++.+...+. ++++.+|..|+.+|..++..-.. .......++.+..++
T Consensus 164 ~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL 243 (780)
T 2z6g_A 164 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML 243 (780)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHH
Confidence 678999999999988743221 11 1246666666665 44788999999999997754211 122345889999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh--------C-------
Q 015150 76 QDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL--------N------- 137 (412)
Q Consensus 76 ~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--------~------- 137 (412)
+++++.+|..++.+|.+++....... .....+|.+.+++.++++.++..++.++..++... .
T Consensus 244 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~L 323 (780)
T 2z6g_A 244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 323 (780)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHH
Confidence 99999999999999999987533211 12457889999999888889888887777655310 0
Q ss_pred ------------------------------HHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHH
Q 015150 138 ------------------------------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI 187 (412)
Q Consensus 138 ------------------------------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 187 (412)
.......++|.+..++.+.+..++..++.++..++...........++|.
T Consensus 324 v~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~ 403 (780)
T 2z6g_A 324 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGT 403 (780)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHH
Confidence 00112235677778888888888888888888887554332233568899
Q ss_pred HHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcC-CCc-hHHHHHHHHhhHHHhhhCh------h
Q 015150 188 FLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAED-RHW-RVRLAIIEYIPLLASQLGV------G 256 (412)
Q Consensus 188 l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d-~~~-~vr~~~~~~l~~l~~~~~~------~ 256 (412)
+..+++++++++|..++.+|..+...-.. .......++.+.+++.+ .++ .+|..++.+++.++...+. .
T Consensus 404 Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~ 483 (780)
T 2z6g_A 404 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA 483 (780)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 99999999999999999999998754211 11123467888887766 344 8999999999988653322 1
Q ss_pred hHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHhCh--hhhhhhhHHHHHhhhcCCc--------------------
Q 015150 257 FFDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPH-------------------- 313 (412)
Q Consensus 257 ~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~~~~~~-------------------- 313 (412)
......+|.+..+|.+++. .+|..|+.+|+.+...-.. ......++|.+.+++.+.+
T Consensus 484 v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~ 563 (780)
T 2z6g_A 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 563 (780)
T ss_dssp HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTC
T ss_pred HHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhccc
Confidence 1223457888999988764 8999999999998742111 1122456777777766543
Q ss_pred --hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch--HHHHhhHHHHHHhhc
Q 015150 314 --YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVELS 387 (412)
Q Consensus 314 --~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~i~~~l~~l~ 387 (412)
..++..++.+|+.++..-... ......+|.+..++.+++++||..++.+|..+...-.. .......++.|..++
T Consensus 564 ~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll 643 (780)
T 2z6g_A 564 RMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 643 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGG
T ss_pred ChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHH
Confidence 346677788888776321111 12456889999999999999999999999998643111 122345788899999
Q ss_pred CCCCccHHHHHHHHHHHhHH
Q 015150 388 EDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 388 ~d~~~~vr~~a~~al~~~~~ 407 (412)
+|++.+||..|..+|..+..
T Consensus 644 ~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 644 HSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp GCSCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999876
No 24
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.89 E-value=2.4e-20 Score=178.04 Aligned_cols=405 Identities=15% Similarity=0.140 Sum_probs=301.3
Q ss_pred chhHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccC-----c---hhhhhhhHHHHH
Q 015150 2 PMVRRSAATNLGKFAATVEA-AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE-----P---QDCVAHILPVIV 72 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~-----~---~~~~~~l~~~l~ 72 (412)
+.++..|+.+++.++..-.. +.+.+.=.|.+..++.++++.+|..|+.+|..+..... + +.....+++.+.
T Consensus 304 ~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~ 383 (810)
T 3now_A 304 ELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACR 383 (810)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHH
Confidence 46788899999987764221 22333223889999988888899999999999875322 1 112356788888
Q ss_pred hhccCC--ChHHHHHHHHHHHHHHHHhCCC--Cc-ccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC----------
Q 015150 73 NFSQDK--SWRVRYMVANQLYELCEAVGPE--PT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---------- 137 (412)
Q Consensus 73 ~l~~d~--~~~vR~~~~~~l~~l~~~~~~~--~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---------- 137 (412)
+++.++ ++.+|+.++.+|..++...... .. ....+|.+.+++++++..+...+..+|+.++....
T Consensus 384 ~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~ 463 (810)
T 3now_A 384 RFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIE 463 (810)
T ss_dssp HHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGG
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHH
Confidence 888877 8999999999999987532211 11 13589999999999999999999999999987431
Q ss_pred -------------------------HHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh--hHHHHhhHHHHHH
Q 015150 138 -------------------------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLS 190 (412)
Q Consensus 138 -------------------------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ 190 (412)
........+|.+..+++++++.+|..+++++++++..-.. .......+|.+..
T Consensus 464 la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~ 543 (810)
T 3now_A 464 LAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLR 543 (810)
T ss_dssp GTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHH
T ss_pred HHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 1122345789999999999999999999999999853211 1223567899999
Q ss_pred hhcccChHHHHHHHHHHHHHHHhhchhhH-----HhhHHHHHHHHhcCCCc-hHHHHHHHHhhHHHhhhC---hhhHHHH
Q 015150 191 LLKDEFPDVRLNIISKLDQVNQVIGIDLL-----SQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLG---VGFFDDK 261 (412)
Q Consensus 191 ~l~d~~~~vr~~~~~~l~~i~~~~~~~~~-----~~~~~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~---~~~~~~~ 261 (412)
++.+.++.+|..++.+|..++....++.. ....+|.+..++..+.. ..+..++.++..++..-. .......
T Consensus 544 LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG 623 (810)
T 3now_A 544 MALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ 623 (810)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence 99999999999999999999866443321 13468888998875533 445577788877775421 1122344
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh-hhhh--hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch--hH-
Q 015150 262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-DWAM--QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--EI- 335 (412)
Q Consensus 262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~--~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--~~- 335 (412)
.+|.+..++.+++..||++|+.+++.+...-.. ..+. ...++.|..++..++..+|..++.+++.++..... ..
T Consensus 624 ~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~i 703 (810)
T 3now_A 624 GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKI 703 (810)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 688899999999999999999999998752111 1112 35788999999999999999999999999863222 22
Q ss_pred HH-HhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH----HHHhhHHHHHHhhcCCC---CccHHHHHHHHHHHhHH
Q 015150 336 TC-SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDP---DVDVRFFATQALQSKDQ 407 (412)
Q Consensus 336 ~~-~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~---~~~vr~~a~~al~~~~~ 407 (412)
+. ...+|.+..++.+++..+|..+++++.++... +++ ......+|.|..+++++ +.+++..|.++|..+..
T Consensus 704 i~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 704 LAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 33 46899999999999999999999999999863 222 34467899999987655 68899999999998864
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.88 E-value=1.4e-20 Score=177.53 Aligned_cols=387 Identities=14% Similarity=0.069 Sum_probs=265.9
Q ss_pred hhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch-hh--hhhhHHHHHhhcc-CCChHHHHHHHHHHHHHHH
Q 015150 20 EAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-DC--VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCE 95 (412)
Q Consensus 20 ~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~-~~--~~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~ 95 (412)
+...+....+|.+..+++++++.+|..|+..+..++..-... .. ....++.+.+.+. ++++.+|..++.+|..++.
T Consensus 10 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~ 89 (529)
T 1jdh_A 10 DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 89 (529)
T ss_dssp -------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred chhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 333445557888888899999999999999999998653221 11 1246676776664 4589999999999999764
Q ss_pred HhC--CCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhccCCcHHHHHHHHHHHHh
Q 015150 96 AVG--PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMG 170 (412)
Q Consensus 96 ~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~ 170 (412)
... ........+|.+.++++++++.++..++.+|..++...+.. ......+|.+.+++.++++.++..++.++..
T Consensus 90 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~ 169 (529)
T 1jdh_A 90 HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 169 (529)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 311 00122357899999999999999999999999998764322 2245689999999999999999988777766
Q ss_pred cCccc----------C-----------------------------------hhHHHHhhHHHHHHhhcccChHHHHHHHH
Q 015150 171 MAPIL----------G-----------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIIS 205 (412)
Q Consensus 171 l~~~~----------~-----------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~~~~ 205 (412)
++..- | ........+|.+..++.+.++.++..++.
T Consensus 170 la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249 (529)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHH
Confidence 54310 0 00001244666677777777788888888
Q ss_pred HHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC--h-hhHHHHHHHHHHHHhcC--chhHHHHH
Q 015150 206 KLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--V-GFFDDKLGALCMQWLKD--KVYSIRDA 280 (412)
Q Consensus 206 ~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~-~~~~~~l~~~l~~~l~d--~~~~vr~~ 280 (412)
.+..+............++|.+.+++.++++.+|..++..+..++.... . .......+|.+..++.+ .++.++..
T Consensus 250 ~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~ 329 (529)
T 1jdh_A 250 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 329 (529)
T ss_dssp HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHH
Confidence 8877776543322235678999999999999999999999988865321 1 11223357777888765 33789999
Q ss_pred HHHHHHHHHHHhCh------hhhhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCC
Q 015150 281 AANNVKRLAEEFGP------DWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDR 351 (412)
Q Consensus 281 a~~~l~~l~~~~~~------~~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~ 351 (412)
|+.+|+.+....+. .......+|.+.+++.+++ +.+|..++.+++.++..-... .....++|.+...+.++
T Consensus 330 a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~ 409 (529)
T 1jdh_A 330 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 409 (529)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHH
Confidence 99999988653222 1123357889999999876 699999999999998532221 23456889999999888
Q ss_pred CchHHHHHHHHHHH----------------------Hhhhhch--HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 352 VPNIKFNVAKVLQS----------------------LIPIVDQ--SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 352 ~~~vR~~~~~~l~~----------------------l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
++.+|..++++++. ++..... .......+|.+..++.|++.+||..+..++..+.
T Consensus 410 ~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~ 488 (529)
T 1jdh_A 410 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488 (529)
T ss_dssp HHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 88888866665554 3221110 1234567789999999999999999999998875
No 26
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.87 E-value=7.2e-19 Score=167.96 Aligned_cols=407 Identities=12% Similarity=0.074 Sum_probs=302.1
Q ss_pred CchhHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch---h-hhhhhHHHHH
Q 015150 1 MPMVRRSAATNLGKFAATVE----AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---D-CVAHILPVIV 72 (412)
Q Consensus 1 ~~~vR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~---~-~~~~l~~~l~ 72 (412)
|+.+|..+.-++.++-..+. .+.+.+.+-.++...+...+..-...|+.++..++...++. . .....++.+.
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li 296 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMIL 296 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHH
Confidence 57789999999999888665 24455556666666666666555666788888888765441 1 2445889999
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHhCC-CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH--------HHHHH
Q 015150 73 NFSQDKSWRVRYMVANQLYELCEAVGP-EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--------ELAIQ 143 (412)
Q Consensus 73 ~l~~d~~~~vR~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~ 143 (412)
.++.+++..++..++.+++..+..-.. +.....-+|.+..++++++..+|..|+.+|.+++...+. +....
T Consensus 297 ~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~ 376 (810)
T 3now_A 297 AMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAAL 376 (810)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHH
Confidence 999999999999999999987643111 111122249999999988899999999999998753321 11234
Q ss_pred hhhhhHHHhccCC--cHHHHHHHHHHHHhcCcccChh--HHH-HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc---
Q 015150 144 HILPCVKELSSDS--SQHVRSALATVIMGMAPILGKD--ATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--- 215 (412)
Q Consensus 144 ~~~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~--~~~-~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~--- 215 (412)
.+++.+.+++.++ ++.+|..+++++..+....... ... ...+|.+..+++.+++.++..++..|+.+.....
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~ 456 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE 456 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh
Confidence 5788888888776 8899999999999997543221 111 4688999999998899999999999999986431
Q ss_pred --------------------------------hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh--hhHHHH
Q 015150 216 --------------------------------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDK 261 (412)
Q Consensus 216 --------------------------------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~ 261 (412)
...+....+|.+..+++++++.+|..+++++..++..-.. ......
T Consensus 457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~G 536 (810)
T 3now_A 457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEG 536 (810)
T ss_dssp CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 0011235689999999999999999999999999853211 112344
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh-----hhhhHHHHHhhhcCC-chHHHHHHHHHHHHhccccch--
Q 015150 262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA-----MQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGS-- 333 (412)
Q Consensus 262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~-- 333 (412)
.+|.++.++.+.+..+|+.|+.+|+.+.....++.. ....+|.|.+++.+. +...+..++.+|..++..-..
T Consensus 537 aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~ 616 (810)
T 3now_A 537 GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR 616 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHH
Confidence 689999999999999999999999999876544321 134789999988755 344556789999999864321
Q ss_pred -hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch-HHHH--hhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 334 -EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-SVVE--KSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 334 -~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~-~~~~--~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
.......+|.+..++.++++.||..+++++++++..-.. ..+. ...+|.|..++..++.++|..|+.++..+..
T Consensus 617 ~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 617 QRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 123446789999999999999999999999999863221 1222 3578999999999999999999999999875
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.87 E-value=9.8e-20 Score=177.86 Aligned_cols=389 Identities=13% Similarity=0.039 Sum_probs=275.2
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchh-h--hhhhHHHHHhhcc-C
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD-C--VAHILPVIVNFSQ-D 77 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~-~--~~~l~~~l~~l~~-d 77 (412)
+.+|..+++.+..... ..+....+|.+..++.++++.+|..|+.++..++....... . ...+++.+.+.+. +
T Consensus 129 ~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~ 204 (780)
T 2z6g_A 129 QMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 204 (780)
T ss_dssp CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC
Confidence 3567777777664322 23345677888888889999999999999999987532211 1 2346777776665 4
Q ss_pred CChHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HH-HHhhhhhHHHh
Q 015150 78 KSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LA-IQHILPCVKEL 152 (412)
Q Consensus 78 ~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~-~~~~~~~l~~~ 152 (412)
.++.+|..++.+|..++..... .......+|.+.++++++++.+|..|+.+|..++...+.. .+ ....+|.+.++
T Consensus 205 ~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~l 284 (780)
T 2z6g_A 205 NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHH
Confidence 5899999999999997653111 1122457999999999999999999999999998764332 22 35688999999
Q ss_pred ccCCcHHHHHHHHHHHHhcCccc--Ch-hHHHHhhHHHHHHhhcccChH-HHHHHHHHHHHHHHhhc--hhhHHhhHHHH
Q 015150 153 SSDSSQHVRSALATVIMGMAPIL--GK-DATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIG--IDLLSQSLLPA 226 (412)
Q Consensus 153 ~~d~~~~vr~~~~~~l~~l~~~~--~~-~~~~~~l~~~l~~~l~d~~~~-vr~~~~~~l~~i~~~~~--~~~~~~~~~~~ 226 (412)
+.+.++.++..++.++..++... +. .......++.+..++++.+++ .+..+..++..++..-. ........+|.
T Consensus 285 L~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~ 364 (780)
T 2z6g_A 285 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 364 (780)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHH
Confidence 99999999999988888766321 11 112235678888888876654 44456666666653211 12223456889
Q ss_pred HHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHH
Q 015150 227 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVP 303 (412)
Q Consensus 227 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~ 303 (412)
+..++.+.+..++..++..+..++...........++|.+.+++.++++.+|..|+.+|+.+...-.. .......++
T Consensus 365 Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~ 444 (780)
T 2z6g_A 365 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 444 (780)
T ss_dssp HGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHH
T ss_pred HHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence 99999999999999999999998876544333456899999999999999999999999988653111 111245778
Q ss_pred HHHhhhcCC-c-hHHHHHHHHHHHHhccccchh------HHHHhhHHHHHhhcCCCCc-hHHHHHHHHHHHHhhhhchH-
Q 015150 304 QVLEMINNP-H-YLYRMTILQAISLLAPVMGSE------ITCSQLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQS- 373 (412)
Q Consensus 304 ~l~~~~~~~-~-~~~r~~~~~~l~~l~~~~~~~------~~~~~il~~l~~~l~d~~~-~vR~~~~~~l~~l~~~~~~~- 373 (412)
.+.+++.+. + ..+|..++.+++.++...+.. ......+|.+.+++.++.. .+|..++++|+.++..-...
T Consensus 445 ~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~ 524 (780)
T 2z6g_A 445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 524 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHH
Confidence 888888763 3 389999999999997644331 1234678999999988775 99999999999997532211
Q ss_pred -HHHhhHHHHHHhhcCCCCccH
Q 015150 374 -VVEKSIRPCLVELSEDPDVDV 394 (412)
Q Consensus 374 -~~~~~i~~~l~~l~~d~~~~v 394 (412)
.....++|.|..++.+.+.++
T Consensus 525 ~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 525 PLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhcchhH
Confidence 233467777777665544333
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.86 E-value=4.5e-19 Score=170.54 Aligned_cols=385 Identities=14% Similarity=0.073 Sum_probs=271.9
Q ss_pred hhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchh-h--hhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhC
Q 015150 23 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD-C--VAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVG 98 (412)
Q Consensus 23 ~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~-~--~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~ 98 (412)
.+....+|.+..+++++++.+|..|+..+..++....... . ....++.+.+.+.+ +++.+|..++.+|..++....
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence 3445567888888999999999999999999998754321 1 12467777776654 589999999999998764321
Q ss_pred C--CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCc
Q 015150 99 P--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 173 (412)
Q Consensus 99 ~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 173 (412)
. .......+|.+.++++++++.+|..|+.+|..++....+. ......+|.+.+++.+.++.++..++.++..++.
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 0 0122357899999999999999999999999998764322 2245689999999998899999888877776653
Q ss_pred ccCh---------------------------------------------hHHHHhhHHHHHHhhcccChHHHHHHHHHHH
Q 015150 174 ILGK---------------------------------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLD 208 (412)
Q Consensus 174 ~~~~---------------------------------------------~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~ 208 (412)
..+. .......+|.+..++.+.+..++..++..|.
T Consensus 170 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~ 249 (644)
T 2z6h_A 170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249 (644)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1100 0001134566666666667777777777777
Q ss_pred HHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhcCch--hHHHHHHHH
Q 015150 209 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKV--YSIRDAAAN 283 (412)
Q Consensus 209 ~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~--~~vr~~a~~ 283 (412)
.++...........++|.+.+++.+.++.+|..++.++..++..-.. .......++.++.++.+.. +.++..|+.
T Consensus 250 nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~ 329 (644)
T 2z6h_A 250 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 329 (644)
T ss_dssp HHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHH
Confidence 77654332222356889999999999999999999999988763211 1122346788888887643 789999999
Q ss_pred HHHHHHHHhChh------hhhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCc-
Q 015150 284 NVKRLAEEFGPD------WAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVP- 353 (412)
Q Consensus 284 ~l~~l~~~~~~~------~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~- 353 (412)
+|+.+....+.. ......+|.+.+++.+++ +.+|..++.+++.++..-... .....++|.+.+++.+.++
T Consensus 330 aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~ 409 (644)
T 2z6h_A 330 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 409 (644)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchh
Confidence 999987432211 123457899999999875 799999999999997532221 2345678888888776443
Q ss_pred ---------------------hHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 354 ---------------------NIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 354 ---------------------~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
.++..++.+|..++..-... ......+|.|..++.+++.+++..+..++..+..
T Consensus 410 vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp HTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 45556666666665432221 2245688999999999999999999999888753
No 29
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.86 E-value=3.6e-19 Score=166.00 Aligned_cols=378 Identities=12% Similarity=0.105 Sum_probs=278.4
Q ss_pred HHHHHHhccCCchHHHHHHHHhHHHHhhc--cCc--hhhhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCC---C
Q 015150 29 MSIFEELTQDDQDSVRLLAVEGCGALGKL--LEP--QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP---E 100 (412)
Q Consensus 29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~--~~~--~~~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~---~ 100 (412)
++-+.+.++++++..+..|+..+..+... .++ .....-++|.+.+++++ .++.++..++.+|++++..... .
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34455667888888888899888887643 222 23345589999998864 5689999999999999842111 0
Q ss_pred CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC---HHHHHHhhhhhHHHhccCCc-----HHHHHHHHHHHHhcC
Q 015150 101 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---PELAIQHILPCVKELSSDSS-----QHVRSALATVIMGMA 172 (412)
Q Consensus 101 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~~~d~~-----~~vr~~~~~~l~~l~ 172 (412)
....-.+|.+.+++.+++..+|..|+.+|+.++...+ ........++.+..++.+.+ ..+...++.++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 1223479999999999999999999999999975422 22334557888888876543 345666777777776
Q ss_pred ccc---ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHh
Q 015150 173 PIL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYI 246 (412)
Q Consensus 173 ~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l 246 (412)
..- ..-.....++|.+.+++.+++++++..++.+|..++..-.. ......++|.+..++.++++.++..++.++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 432 12223467899999999999999999999999998754221 112345789999999999999999999999
Q ss_pred hHHHhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHH
Q 015150 247 PLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTI 320 (412)
Q Consensus 247 ~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~ 320 (412)
+.++..... .......++.+..++.+++..+|..|+.+++.+...... ......++|.+...+.+.++.+|..+
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 888643211 112233567778889999999999999999998742211 12234688999999999999999999
Q ss_pred HHHHHHhccccchhH----HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc---h-HHH-----HhhHHHHHHhhc
Q 015150 321 LQAISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---Q-SVV-----EKSIRPCLVELS 387 (412)
Q Consensus 321 ~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~---~-~~~-----~~~i~~~l~~l~ 387 (412)
+.++..++.....+. ....+++.|..++++++++++..++.+|..+.+... . +.+ ....+..+..+.
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 458 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 458 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH
Confidence 999999986544432 345688999999999999999999999998875422 1 112 234567888899
Q ss_pred CCCCccHHHHHHHHHHHhH
Q 015150 388 EDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 388 ~d~~~~vr~~a~~al~~~~ 406 (412)
.+++.+|+..|...+.+.-
T Consensus 459 ~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 459 RHENESVYKASLNLIEKYF 477 (510)
T ss_dssp GCSSHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHC
Confidence 9999999999999887653
No 30
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.86 E-value=9.7e-19 Score=164.07 Aligned_cols=377 Identities=12% Similarity=0.109 Sum_probs=279.5
Q ss_pred HHHHHHhccCCchHHHHHHHHhHHHHhhcc--Cc--hhhhhhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHHhCC---C
Q 015150 29 MSIFEELTQDDQDSVRLLAVEGCGALGKLL--EP--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---E 100 (412)
Q Consensus 29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~--~~--~~~~~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~---~ 100 (412)
++-+.+.+.++++..+..|+..+..+...- ++ ......++|.+.+++. +.++.++..++.+|+.++..... .
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455566677888888888888888776432 22 2344558899988875 56689999999999999853211 1
Q ss_pred CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC---HHHHHHhhhhhHHHhccCCc-----HHHHHHHHHHHHhcC
Q 015150 101 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---PELAIQHILPCVKELSSDSS-----QHVRSALATVIMGMA 172 (412)
Q Consensus 101 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~~~d~~-----~~vr~~~~~~l~~l~ 172 (412)
....-.+|.+..++.+++..+|..|+.+|+.++...+ ........++.+..++.+.+ ..+...++.++..++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 1223578999999999999999999999999975321 22334557888888876543 345667777777776
Q ss_pred ccc---ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHh
Q 015150 173 PIL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYI 246 (412)
Q Consensus 173 ~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l 246 (412)
... ........++|.+..++.+++++++..++.+|..+...... ......++|.+..++.++++.++..++.++
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 317 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 317 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence 432 12223467889999999999999999999999988754221 112345789999999999999999999999
Q ss_pred hHHHhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHH
Q 015150 247 PLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTI 320 (412)
Q Consensus 247 ~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~ 320 (412)
+.++..... .......++.+..++.+++..+|..|+.+|+.+...... ......++|.+..++.+.++.+|..+
T Consensus 318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 397 (529)
T 3tpo_A 318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA 397 (529)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence 888643211 112234678889999999999999999999998753211 12234688999999999999999999
Q ss_pred HHHHHHhccccchhH----HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh---ch-HHH-----HhhHHHHHHhhc
Q 015150 321 LQAISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV---DQ-SVV-----EKSIRPCLVELS 387 (412)
Q Consensus 321 ~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~---~~-~~~-----~~~i~~~l~~l~ 387 (412)
+.+++.++.....+. ....++|.|+.+|+++++.++..++.+|..+.... +. +.+ ....+..+..+.
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 477 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 477 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH
Confidence 999999986544432 24468999999999999999999999999987532 21 222 224567888899
Q ss_pred CCCCccHHHHHHHHHHHh
Q 015150 388 EDPDVDVRFFATQALQSK 405 (412)
Q Consensus 388 ~d~~~~vr~~a~~al~~~ 405 (412)
.+++.+|+..|...+.+.
T Consensus 478 ~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 478 RHENESVYKASLNLIEKY 495 (529)
T ss_dssp GCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999888765
No 31
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.85 E-value=3.6e-19 Score=153.30 Aligned_cols=254 Identities=20% Similarity=0.140 Sum_probs=193.3
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhH
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 185 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 185 (412)
.++.+.+.++|+++.+|..|+.+|+.+.. ...++.+..++.|+++.+|..++.+++.+.... .....++
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~---~~~~~l~ 92 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK---KCEDNVF 92 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT---TTHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc---ccchHHH
Confidence 46778888888888999988888887652 236677888888889999999999888876321 1123455
Q ss_pred HHHHH-hhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHH
Q 015150 186 PIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 264 (412)
Q Consensus 186 ~~l~~-~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 264 (412)
+.+.+ +++|+++.||..++.+|+.+....+ ...+.+++.+...++|+++.+|..++..++.+.. +..+|
T Consensus 93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~ 162 (280)
T 1oyz_A 93 NILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP 162 (280)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHH
Confidence 66653 5678889999999999998874322 1124678888889999999999999998876653 22567
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHH
Q 015150 265 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV 344 (412)
Q Consensus 265 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l 344 (412)
.+..++.|+++.||..|+.+++.+. .. ....++.+...+.|+++.+|..++.+++.+. .+..+|.+
T Consensus 163 ~L~~~l~d~~~~vr~~a~~aL~~~~----~~--~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~L 228 (280)
T 1oyz_A 163 LLINLLKDPNGDVRNWAAFAININK----YD--NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSVL 228 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHT----CC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhc----cC--cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHHHH
Confidence 7888899999999999999998762 11 2457788888999999999999999999876 24577888
Q ss_pred HhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcC-CCCccHHHHHHHHHHH
Q 015150 345 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE-DPDVDVRFFATQALQS 404 (412)
Q Consensus 345 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~ 404 (412)
...++|+. ||..++.+++.+.. ...+|.|..+++ +++++++..+..++..
T Consensus 229 ~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 229 CDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 88888854 89999999998864 367888888664 4677888888877754
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.85 E-value=2.8e-19 Score=170.26 Aligned_cols=386 Identities=14% Similarity=0.125 Sum_probs=217.5
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChH
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWR 81 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~ 81 (412)
|.+|-.|+++++.+.. ....+.+.+.+.+++.|+++.+|+.|+.++..+....++ ....+++.+..++.|+++.
T Consensus 121 ~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~--~v~~~~~~l~~lL~D~d~~ 194 (618)
T 1w63_A 121 QFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE--LMEMFLPATKNLLNEKNHG 194 (618)
T ss_dssp SHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG--GGGGGGGGTTTSTTCCCHH
T ss_pred HhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhCCCCHh
Confidence 5677777777776652 344566777777777788888888888888887775432 2345667777777788888
Q ss_pred HHHHHHHHHHHHHHHhCC-CCcccchHHHHHHhcC---------------CChHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 015150 82 VRYMVANQLYELCEAVGP-EPTRSDVVPAYVRLLR---------------DNEAEVRIAAAGKVTKICRILNPELAIQHI 145 (412)
Q Consensus 82 vR~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~---------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 145 (412)
|+.+++.+|..++..-+. ......++|.+.+.+. .+++..+...+++++.++..- ++ ....+
T Consensus 195 V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~-~~-~~~~~ 272 (618)
T 1w63_A 195 VLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND-DD-SSEAM 272 (618)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC-HH-HHHTT
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC-HH-HHHHH
Confidence 888888777777642110 0011233444443332 135566666666666655421 11 11223
Q ss_pred hhhHHHhc------cCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH
Q 015150 146 LPCVKELS------SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 219 (412)
Q Consensus 146 ~~~l~~~~------~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~ 219 (412)
.+.+..++ ++.+..|...+++++..+... .......++.+..++.++++++|..++.++..++..- ++.+
T Consensus 273 ~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~---~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~-p~~~ 348 (618)
T 1w63_A 273 NDILAQVATNTETSKNVGNAILYETVLTIMDIKSE---SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD-HNAV 348 (618)
T ss_dssp HHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC-HHHH
Confidence 33333322 223445555666665554321 1222344555666666666677777776666666542 2222
Q ss_pred HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh--h-
Q 015150 220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--W- 296 (412)
Q Consensus 220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~- 296 (412)
....+.+..++.|++..+|..+++.+..++..-.. +.+++-+...+.+.+.++|..++.+++.++..+.+. +
T Consensus 349 -~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~ 423 (618)
T 1w63_A 349 -QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWH 423 (618)
T ss_dssp -GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred -HHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 33444555556666666666666655555442211 223444445555555666666666666655543211 1
Q ss_pred --------------------------------hhhhhHHHHHhhhcC--CchHHHHHHHHHHHHhccccchh--------
Q 015150 297 --------------------------------AMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSE-------- 334 (412)
Q Consensus 297 --------------------------------~~~~~l~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~~~-------- 334 (412)
.....++.+.+.+.+ ........+++++|..+..+...
T Consensus 424 v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~ 503 (618)
T 1w63_A 424 IDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPI 503 (618)
T ss_dssp HHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCC
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhccccccccccc
Confidence 112233444444442 12334446788888887543210
Q ss_pred -HHHHhhHHHHHhhcC--CCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 335 -ITCSQLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 335 -~~~~~il~~l~~~l~--d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
.....+.+.+..+++ +.++.||..++.++.+++...+. ..+.+...+....+|.|.+||..|...+..+.
T Consensus 504 ~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~--~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 504 QVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC--TVNRIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp CCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 001233444444443 56789999999999999876543 24556666777789999999999999877654
No 33
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.83 E-value=3.7e-18 Score=159.19 Aligned_cols=342 Identities=13% Similarity=0.073 Sum_probs=255.8
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCHH---
Q 015150 68 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPE--- 139 (412)
Q Consensus 68 ~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~--- 139 (412)
++-+.+.+++.+...+..++..+.++...-.+.. ...-++|.+.+++++ .++.++..|+.+|..++...++.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5666777788899999999999988764322221 223479999999974 45899999999999998643322
Q ss_pred HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC---hhHHHHhhHHHHHHhhcccC-----hHHHHHHHHHHHHHH
Q 015150 140 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEF-----PDVRLNIISKLDQVN 211 (412)
Q Consensus 140 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-----~~vr~~~~~~l~~i~ 211 (412)
......+|.+.+++++++..||..++++++.++..-. ........++.+..++.+.+ ..+...+..++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 3344589999999999999999999999999975321 12223467788888887644 234556667777776
Q ss_pred Hhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 015150 212 QVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNV 285 (412)
Q Consensus 212 ~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 285 (412)
....+ -.....++|.+.+++.++++.++..++.++..++...... .....++|.+..++.+++..++..++.++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 54321 1223678999999999999999999999998887533211 11234678899999999999999999999
Q ss_pred HHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHH
Q 015150 286 KRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNV 359 (412)
Q Consensus 286 ~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~ 359 (412)
+.+...-.. .......++.+..++.+++..+|..++++++.++...... .....++|.++.++.+.++.+|..+
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 988642211 1123457788888999999999999999999997543321 2345689999999999999999999
Q ss_pred HHHHHHHhhhhchHH----HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150 360 AKVLQSLIPIVDQSV----VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409 (412)
Q Consensus 360 ~~~l~~l~~~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~ 409 (412)
+++|..++..-..+. ....+++.|..+++.+|++++..+..++..+.+..
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 999999986544432 34578899999999999999999999999987643
No 34
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.83 E-value=8.4e-18 Score=157.69 Aligned_cols=343 Identities=13% Similarity=0.072 Sum_probs=258.3
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcC-CChHHHHHHHHHHHHHHHHhhCHH--
Q 015150 67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE-- 139 (412)
Q Consensus 67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~-- 139 (412)
-++.+.+.+++.++..+..++..+.++...-.... ....++|.+.+++. +.++.++..|+.+|..++......
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 56677778888899999999998887753222221 23457999999986 556899999999999998654332
Q ss_pred -HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc---ChhHHHHhhHHHHHHhhcccC-----hHHHHHHHHHHHHH
Q 015150 140 -LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL---GKDATIEQLLPIFLSLLKDEF-----PDVRLNIISKLDQV 210 (412)
Q Consensus 140 -~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~-----~~vr~~~~~~l~~i 210 (412)
......+|.+..++.+++..+|..++++|+.++..- .........++.+..++.+.+ ..+...+..++..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 344558999999999999999999999999997432 111223457788888887643 23455666677776
Q ss_pred HHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 015150 211 NQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANN 284 (412)
Q Consensus 211 ~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 284 (412)
+....+ -.....++|.+..++.++++.++..++.++..++...... .....++|.+..++.+++..++..++.+
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~a 316 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 316 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHH
Confidence 654221 1223678999999999999999999999998887643211 1123467889999999999999999999
Q ss_pred HHHHHHHhC---hhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHH
Q 015150 285 VKRLAEEFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFN 358 (412)
Q Consensus 285 l~~l~~~~~---~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~ 358 (412)
++.++..-. ........++.+..++.+++..+|..++++++.++...... .....++|.++.++.+.++.+|..
T Consensus 317 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 396 (529)
T 3tpo_A 317 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKA 396 (529)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHH
Confidence 999874211 11223467888999999999999999999999997543221 234568999999999999999999
Q ss_pred HHHHHHHHhhhhchHH----HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150 359 VAKVLQSLIPIVDQSV----VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409 (412)
Q Consensus 359 ~~~~l~~l~~~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~ 409 (412)
++++|+.++..-.++. ....++|.|..+++.+|++++..+..++..+.+..
T Consensus 397 A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 397 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999986544432 34568899999999999999999999999987643
No 35
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.82 E-value=9.9e-19 Score=150.51 Aligned_cols=253 Identities=15% Similarity=0.081 Sum_probs=179.7
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhh
Q 015150 67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL 146 (412)
Q Consensus 67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 146 (412)
-++.+...+.|+++.+|..++..|+.+.. +..++.+.++++|+++.+|..|+.+|+.+.... . ....++
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--~-~~~~l~ 92 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--K-CEDNVF 92 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--T-THHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--c-cchHHH
Confidence 45566677778888888888888887652 456777888888888888888888887765311 1 112345
Q ss_pred hhHHH-hccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHH
Q 015150 147 PCVKE-LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 225 (412)
Q Consensus 147 ~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~ 225 (412)
+.+.+ +.+|+++.||..++.+++.+....+ .....++|.+...++|+++.||..++.+|+.+.. +..+|
T Consensus 93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~ 162 (280)
T 1oyz_A 93 NILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP 162 (280)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHH
Confidence 55553 4578888888888888887753211 1134567888888888888888888888887653 23677
Q ss_pred HHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHH
Q 015150 226 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 305 (412)
Q Consensus 226 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l 305 (412)
.+..+++|+++.+|..++..++.+... .+...|.+..+++|+++.||..|+.+|+.+. ....+|.+
T Consensus 163 ~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~L 228 (280)
T 1oyz_A 163 LLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSVL 228 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHHHH
Confidence 788888888888888888888765311 1346777888888999999999998887754 24567788
Q ss_pred HhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCC-CCchHHHHHHHHHH
Q 015150 306 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD-RVPNIKFNVAKVLQ 364 (412)
Q Consensus 306 ~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d-~~~~vR~~~~~~l~ 364 (412)
...++|++ +|..++.+++.+.. +..+|.+.+++++ +++.++..++..+.
T Consensus 229 ~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 229 CDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 88887765 78888888888753 3577888887765 46677777776664
No 36
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.82 E-value=1.1e-17 Score=159.42 Aligned_cols=366 Identities=11% Similarity=0.065 Sum_probs=253.8
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 015150 26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD 105 (412)
Q Consensus 26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 105 (412)
-.+.+.+.+-++|+++.+|..|+.+++.+.. .+....+.+.+.+++.|+++.||+.|+.+++++....+ +. ...
T Consensus 106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~~-v~~ 179 (618)
T 1w63_A 106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-EL-MEM 179 (618)
T ss_dssp HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-GG-GGG
T ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-HH-HHH
Confidence 3455677777889999999999999999873 33567789999999999999999999999999998543 22 246
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH-HHHHhhhhhHHHhcc---------------CCcHHHHHHHHHHHH
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSS---------------DSSQHVRSALATVIM 169 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~---------------d~~~~vr~~~~~~l~ 169 (412)
+++.+..++.|.++.|+..|+.++..+++.-++. .....++|.+.+.+. ..++..+..++++++
T Consensus 180 ~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~ 259 (618)
T 1w63_A 180 FLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLR 259 (618)
T ss_dssp GGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHH
Confidence 7888889999999999999999999987643221 122345565555443 257888888999998
Q ss_pred hcCcccChhHHHHhhHHHHHHhhc------ccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHH
Q 015150 170 GMAPILGKDATIEQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 243 (412)
Q Consensus 170 ~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~ 243 (412)
.++..- ....+.+.+.+..++. +.+..|...+++++..+.. .........+.+..++.++++.+|..++
T Consensus 260 ~l~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL 334 (618)
T 1w63_A 260 ILGRND--DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVAL 334 (618)
T ss_dssp HHTTTC--HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHH
T ss_pred HhCCCC--HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 887532 1123345555555542 3356788888888776532 1223345778888889999999999999
Q ss_pred HHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHH
Q 015150 244 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQA 323 (412)
Q Consensus 244 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~ 323 (412)
.++..++...+. .+ ....+.++.++.|++..||..|+..+..++..-. .+.+++.+.+.+.+.+..+|..++.+
T Consensus 335 ~~L~~i~~~~p~-~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n----v~~iv~eL~~~l~~~d~e~r~~~v~~ 408 (618)
T 1w63_A 335 TSLLKTVQTDHN-AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN----IRGMMKELLYFLDSCEPEFKADCASG 408 (618)
T ss_dssp HHHHHHHHHHHH-HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS----THHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHhhCHH-HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHccccc----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999886432 22 2245567888999999999999999888775322 24567777777777888899999999
Q ss_pred HHHhccccchh--HH---------------------------------HHhhHHHHHhhcCC--CCchHHHHHHHHHHHH
Q 015150 324 ISLLAPVMGSE--IT---------------------------------CSQLLPVVINASKD--RVPNIKFNVAKVLQSL 366 (412)
Q Consensus 324 l~~l~~~~~~~--~~---------------------------------~~~il~~l~~~l~d--~~~~vR~~~~~~l~~l 366 (412)
++.++..++.. .+ ...+++.+...+.+ ....+...+++.+|+.
T Consensus 409 I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy 488 (618)
T 1w63_A 409 IFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEY 488 (618)
T ss_dssp HHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhh
Confidence 99998765321 11 11233344444442 1233444677777777
Q ss_pred hhhhchH---------HHHhhHHHHHHhhcC--CCCccHHHHHHHHHHHhHHh
Q 015150 367 IPIVDQS---------VVEKSIRPCLVELSE--DPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 367 ~~~~~~~---------~~~~~i~~~l~~l~~--d~~~~vr~~a~~al~~~~~~ 408 (412)
+..+... .....+.+.+..+++ ..+..||..+..|+.++...
T Consensus 489 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~ 541 (618)
T 1w63_A 489 GDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTR 541 (618)
T ss_dssp HHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 6543210 011234555555443 56788999998888777643
No 37
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.77 E-value=6.5e-16 Score=146.56 Aligned_cols=390 Identities=11% Similarity=0.055 Sum_probs=212.2
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhc--cCCchHHHHHHHHhHHHHhhccCchhhh-hhhHHHHHhhccCC
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT--QDDQDSVRLLAVEGCGALGKLLEPQDCV-AHILPVIVNFSQDK 78 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~--~~~~~~~r~~a~~~l~~i~~~~~~~~~~-~~l~~~l~~l~~d~ 78 (412)
|.+|-.|+.+++.+.. ....+.+.|.+.+++ .|.++.||+.|+.++..+.+..+ +... ..+.+.+.+++.|+
T Consensus 125 ~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~ 199 (621)
T 2vgl_A 125 PTFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQ 199 (621)
T ss_dssp HHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCS
T ss_pred HHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHHHHHHhCCC
Confidence 5667777777776543 345667777788887 78888888888888888887543 3222 26777888888888
Q ss_pred ChHHHHHHHHHHHHHHHHhCCC--CcccchHHHHHHhcCCC-------------hHHHHHHHHHHHHHHHHhh-------
Q 015150 79 SWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDN-------------EAEVRIAAAGKVTKICRIL------- 136 (412)
Q Consensus 79 ~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~-------------~~~vr~~a~~~l~~l~~~~------- 136 (412)
++.|+.+++..+..++..-+.. ...+.++..+.+++.+. ++..+...++.+..++..-
T Consensus 200 d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~ 279 (621)
T 2vgl_A 200 HLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGR 279 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHH
Confidence 8888888888888776532110 00011111122211100 1222222222222211100
Q ss_pred ------------------------------------------CHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150 137 ------------------------------------------NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 174 (412)
Q Consensus 137 ------------------------------------------~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 174 (412)
+...........+..++.++++.+|..++.++..++..
T Consensus 280 l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~ 359 (621)
T 2vgl_A 280 LTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASS 359 (621)
T ss_dssp HHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhc
Confidence 01112223334444445555556666666666555544
Q ss_pred cChhHHHHhhHHHHHHhhc-ccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh
Q 015150 175 LGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 253 (412)
Q Consensus 175 ~~~~~~~~~l~~~l~~~l~-d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 253 (412)
.+.........+.+...++ |++..+|..++..+..++.. +.+ +.++..+..++.+.+...|..++..++.++..+
T Consensus 360 ~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~Nv-~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~ 435 (621)
T 2vgl_A 360 EFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR---SNA-QQIVAEMLSYLETADYSIREEIVLKVAILAEKY 435 (621)
T ss_dssp TTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---HHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---hhH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 3221222333444445555 55556665555555554422 111 344444555555555556666666666555544
Q ss_pred ChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhcccc
Q 015150 254 GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVM 331 (412)
Q Consensus 254 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~ 331 (412)
.+. ....+..+++++.+....+...++..+..++.... ......+..+.+.+.++. ..+-..+++.+|..+..+
T Consensus 436 ~~~--~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~--~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~ 511 (621)
T 2vgl_A 436 AVD--YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD--DVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLI 511 (621)
T ss_dssp CSS--THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC--SCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHH
T ss_pred CCc--HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh--hHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHh
Confidence 322 12344445555544444444444444444443221 122334445555666654 234455668888887654
Q ss_pred chhHH--HHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcC--CCCccHHHHHHHHHHHhH
Q 015150 332 GSEIT--CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE--DPDVDVRFFATQALQSKD 406 (412)
Q Consensus 332 ~~~~~--~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~--d~~~~vr~~a~~al~~~~ 406 (412)
..... -..++..+.+.+.+.++.||..++.++.+++...+. ..+.+...+..... |.|.|||..|..-..-+.
T Consensus 512 ~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 512 AGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp HSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence 43211 124556667677788899999999999998765432 23455666666666 999999999998776653
No 38
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.77 E-value=2.7e-17 Score=138.06 Aligned_cols=181 Identities=17% Similarity=0.215 Sum_probs=87.4
Q ss_pred HHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhh--hh
Q 015150 225 PAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDW--AM 298 (412)
Q Consensus 225 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~--~~ 298 (412)
+.+.+.+.|++|+.|.+++..+..+.+..+. ..+ ..+++.+...+. |.+..||..|+.+++.++..++..+ +.
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444555555555555555555443211 111 234444555552 5555555555555555555444321 22
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH----H
Q 015150 299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----V 374 (412)
Q Consensus 299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~ 374 (412)
..++|.+.+.++|++..+|.++..++..+....+ .+.++|.+...++++++.+|..++.+++.+....+++ .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 3455555555555555555555555555544333 1234455555555555555555555555544333221 2
Q ss_pred HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150 375 VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 375 ~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 410 (412)
+.+.++|.+..+++|++++||..|..+++.++..+|
T Consensus 173 ~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 233455555555555555555555555555555544
No 39
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.75 E-value=3.7e-14 Score=142.54 Aligned_cols=393 Identities=10% Similarity=0.082 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhc-cC--------chhhhhhhHHHHHhhccCC
Q 015150 8 AATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL-LE--------PQDCVAHILPVIVNFSQDK 78 (412)
Q Consensus 8 a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~-~~--------~~~~~~~l~~~l~~l~~d~ 78 (412)
|-+.|..+-+ ...++..++.++. ..+.+..+|..|+..+.+.... +. +++.+..+-..+++.+.++
T Consensus 23 Ae~~L~~~~~---~p~~~~~L~~il~--~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~ 97 (960)
T 1wa5_C 23 SERNLRQLET---QDGFGLTLLHVIA--STNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISL 97 (960)
T ss_dssp HHHHHHHHHT---STTHHHHHHHHHH--CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhc---CCCHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhC
Confidence 5555554421 1234444444432 1233568999999999877653 22 2234444555555555555
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH-----HH------HHHhhhh
Q 015150 79 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-----EL------AIQHILP 147 (412)
Q Consensus 79 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-----~~------~~~~~~~ 147 (412)
+..+|...+.+++.++..-.+ ..|++++|.+.+.+++.++..+..++.++..+++.... +. ......|
T Consensus 98 ~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~ 176 (960)
T 1wa5_C 98 PNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTA 176 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Confidence 689999999999999987555 45899999999999988888999999999999886531 11 1222233
Q ss_pred hHHH-------hccCCcH---HHH------HHHHHHHHhcCc-ccChhH--HHHhhHHHHHHhhcc-----------cC-
Q 015150 148 CVKE-------LSSDSSQ---HVR------SALATVIMGMAP-ILGKDA--TIEQLLPIFLSLLKD-----------EF- 196 (412)
Q Consensus 148 ~l~~-------~~~d~~~---~vr------~~~~~~l~~l~~-~~~~~~--~~~~l~~~l~~~l~d-----------~~- 196 (412)
.+.. .+++... .+| ..+++++..+.. .++... ......+.+..++.. .+
T Consensus 177 ~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~ 256 (960)
T 1wa5_C 177 PFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHA 256 (960)
T ss_dssp HHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CC
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccc
Confidence 2222 2444321 233 335555544321 112111 113444555555421 11
Q ss_pred ---hHHHHHHHHHHHHHHHhhchhh--HHhhHHHHHHHHhc-----CCCchHHHHHHHHhhHHHhhh------ChhhHHH
Q 015150 197 ---PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQL------GVGFFDD 260 (412)
Q Consensus 197 ---~~vr~~~~~~l~~i~~~~~~~~--~~~~~~~~l~~~~~-----d~~~~vr~~~~~~l~~l~~~~------~~~~~~~ 260 (412)
+.+|+.+...+..+....+... ..+.+++.+.+.+. ..+.+++..+++.+..+++.- ....+..
T Consensus 257 ~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~ 336 (960)
T 1wa5_C 257 SVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMN 336 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHH
Confidence 3577888888888776544321 22334444444443 345577888888887765421 1112334
Q ss_pred HHH-HHHHHHhc-----------------------CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhc------
Q 015150 261 KLG-ALCMQWLK-----------------------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN------ 310 (412)
Q Consensus 261 ~l~-~~l~~~l~-----------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~------ 310 (412)
.++ ++++..+. +..+.+|.+|...+..++..++ +.....+++.+.+.+.
T Consensus 337 ~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~ 415 (960)
T 1wa5_C 337 NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDP 415 (960)
T ss_dssp HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCc
Confidence 444 45555431 1123589999999999999887 4445566676666665
Q ss_pred CCchHHHHHHHHHHHHhcccc-----chh------HHHHhhHHHHHhhcCCC---CchHHHHHHHHHHHHhhhhchHHHH
Q 015150 311 NPHYLYRMTILQAISLLAPVM-----GSE------ITCSQLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVDQSVVE 376 (412)
Q Consensus 311 ~~~~~~r~~~~~~l~~l~~~~-----~~~------~~~~~il~~l~~~l~d~---~~~vR~~~~~~l~~l~~~~~~~~~~ 376 (412)
+++|+.|++++.+++.++... +.. .+.+.+...++..+.|+ ++-||..++++++.++..+.++ +.
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l 494 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QL 494 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-HH
Confidence 678999999999999997542 111 11111222334445666 8999999999999999887543 55
Q ss_pred hhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150 377 KSIRPCLVELSEDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 377 ~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 408 (412)
..++|.+...+.|++..||.+|+.|+..+++.
T Consensus 495 ~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 495 IELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 77888888888899999999999999998874
No 40
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.75 E-value=1.7e-16 Score=130.38 Aligned_cols=188 Identities=19% Similarity=0.203 Sum_probs=130.4
Q ss_pred hhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHh
Q 015150 65 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH 144 (412)
Q Consensus 65 ~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 144 (412)
+..++.+.+.++|+++.+|..++..|+.+.. ...++.+.+++.|+++.||..++.+|+.+.. ..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~ 81 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 81 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 3456667777778888888888888776542 3567777778888888888888888877643 23
Q ss_pred hhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHH
Q 015150 145 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 224 (412)
Q Consensus 145 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~ 224 (412)
.++.+.+++.|+++.||..++.+++.+.. ...+|.+..+++|+++.||..++.+|+.+.. +..+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHH
Confidence 56777777778888888888888777653 2456777777777788888888877777642 2356
Q ss_pred HHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 015150 225 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 292 (412)
Q Consensus 225 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 292 (412)
+.+..+++|+++.+|..++..++.+.. +...+.+..+++|+++.||..|..+|+.+....
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 667777777778888877777766532 335666677777777778888877777665543
No 41
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.74 E-value=8.4e-17 Score=132.23 Aligned_cols=188 Identities=16% Similarity=0.224 Sum_probs=144.7
Q ss_pred hhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHH
Q 015150 183 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 262 (412)
Q Consensus 183 ~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 262 (412)
..++.+...++|+++.+|..++..|+.+.. +..+|.+.+++.|+++.+|..++..++.+.. +..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~ 82 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERA 82 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHH
Confidence 556778888888888999888888887653 2466778888888888999988888876542 124
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHH
Q 015150 263 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLP 342 (412)
Q Consensus 263 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~ 342 (412)
.+.+..+++|+++.||..|+.+|+.+.. ...++.+.+.+.|+++.+|..++.+++.+.. +..++
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~ 146 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE 146 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHH
Confidence 5667778889999999999888887532 3466888888888999999999999988752 35678
Q ss_pred HHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150 343 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 343 ~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 410 (412)
.+..+++|+++.||..++.+|+.+.. +...+.|..+++|+++.||..|..+|+.+...-+
T Consensus 147 ~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 147 PLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 88888889999999999999998854 4677888888888999999999999988766543
No 42
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.74 E-value=1.2e-16 Score=134.07 Aligned_cols=192 Identities=16% Similarity=0.157 Sum_probs=112.2
Q ss_pred CchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcC-CChHHHHHHHHHHHHHHHHh
Q 015150 59 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRI 135 (412)
Q Consensus 59 ~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~ 135 (412)
++.+....+-+.+.+.++|++|..|+.++..|..++...+. .....++++.+...+. |++..||..|+.+++.+++.
T Consensus 8 ~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 8 DPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp SCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 34444555666677778889999999999999988876432 1223567888888884 88888899888888888876
Q ss_pred hCHH--HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150 136 LNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 213 (412)
Q Consensus 136 ~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~ 213 (412)
+++. .+...++|.+...+.|+++.||.++..++..++...+ .+.++|.+...+++.++.+|..++..++.+...
T Consensus 88 l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 88 LAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp HGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 6543 3444566666666666666666666666665554332 123444444444444455555555555444333
Q ss_pred hchh----hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC
Q 015150 214 IGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 254 (412)
Q Consensus 214 ~~~~----~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 254 (412)
.+++ ...+.++|.+..+++|+++++|.++..+++.++..+|
T Consensus 164 ~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 164 TQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 2211 1123344444444444444444444444444444444
No 43
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.74 E-value=2.8e-15 Score=142.21 Aligned_cols=368 Identities=15% Similarity=0.120 Sum_probs=250.2
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhc--cCCChHHHHHHHHHHHHHHHHhCCCCcc
Q 015150 26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPTR 103 (412)
Q Consensus 26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~--~d~~~~vR~~~~~~l~~l~~~~~~~~~~ 103 (412)
-.+.+.+.+-++|+++.+|..|+.+++.+.. .+..+.+.|.+.+++ .|+++.||+.|+.++.++.+..++....
T Consensus 110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~ 185 (621)
T 2vgl_A 110 RLINNAIKNDLASRNPTFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM 185 (621)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc
Confidence 3456677777889999999999999998853 336678889999998 9999999999999999999854332222
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhccC-------------CcHHHHHHHHHHH
Q 015150 104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSD-------------SSQHVRSALATVI 168 (412)
Q Consensus 104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d-------------~~~~vr~~~~~~l 168 (412)
..+++.+.++++|+++.|+.+|+.++..++..-+.. ...+.++..+.+++.+ +++..+..+.+.+
T Consensus 186 ~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll 265 (621)
T 2vgl_A 186 GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLL 265 (621)
T ss_dssp CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHG
T ss_pred hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHH
Confidence 478999999999999999999999999988753321 1223344444444322 1678888888888
Q ss_pred HhcCcccChhHHHHhhHHHHHHhh---ccc-----------ChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCC
Q 015150 169 MGMAPILGKDATIEQLLPIFLSLL---KDE-----------FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR 234 (412)
Q Consensus 169 ~~l~~~~~~~~~~~~l~~~l~~~l---~d~-----------~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~ 234 (412)
..++..-.. ...+.+.+.+..++ .+. ...|...+++++..+. ....+.......+..++.++
T Consensus 266 ~~~~~~~d~-~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~ 341 (621)
T 2vgl_A 266 QCYPPPEDP-AVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHR 341 (621)
T ss_dssp GGSSSCSSH-HHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCS
T ss_pred HHhCCCCCH-HHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCC
Confidence 887743222 22233333333332 111 1255555565555543 22334466778888899899
Q ss_pred CchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCc
Q 015150 235 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH 313 (412)
Q Consensus 235 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~ 313 (412)
++.+|..++.++..++...+.........+.++.++. |++..||..++..+..++.. + -.+.++..+.+.+.+.+
T Consensus 342 ~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~-Nv~~Iv~eL~~yl~~~d 417 (621)
T 2vgl_A 342 ETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR---S-NAQQIVAEMLSYLETAD 417 (621)
T ss_dssp CHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---H-HHHHHHHHHHHHHHHCC
T ss_pred CcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---h-hHHHHHHHHHHHHHhcC
Confidence 9999999999999998765422223345666778888 99999999999988776632 2 24667888888888888
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCcc
Q 015150 314 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVD 393 (412)
Q Consensus 314 ~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~ 393 (412)
...|..++..++.++..+... ....+..+++++.+....+...++..+..+...... ........+...+.|+...
T Consensus 418 ~~~~~~~v~~I~~la~k~~~~--~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~--~~~~~~~~l~~~l~~~~~~ 493 (621)
T 2vgl_A 418 YSIREEIVLKVAILAEKYAVD--YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDD--VQGYAAKTVFEALQAPACH 493 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCS--CHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChh--HHHHHHHHHHHHHcCccch
Confidence 889999999999998766543 345566666666655444555666666655543321 2223444455555566543
Q ss_pred --HHHHHHHHHHHhHHhh
Q 015150 394 --VRFFATQALQSKDQVM 409 (412)
Q Consensus 394 --vr~~a~~al~~~~~~~ 409 (412)
+-..+.+.+|..+..+
T Consensus 494 ~~li~~~~wilGEy~~~~ 511 (621)
T 2vgl_A 494 ENLVKVGGYILGEFGNLI 511 (621)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhcchHHHh
Confidence 4455668888876654
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.73 E-value=2e-16 Score=128.88 Aligned_cols=187 Identities=16% Similarity=0.233 Sum_probs=150.6
Q ss_pred HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHH
Q 015150 182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK 261 (412)
Q Consensus 182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 261 (412)
....+.+.+.++|+++.+|..++.+|+.+.. +..++.+.+.++|+++.+|..++..++.+.. +.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~ 76 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 76 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GG
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 3556788888999999999999988887653 2456778888889999999999888876532 12
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhH
Q 015150 262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLL 341 (412)
Q Consensus 262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il 341 (412)
..+.+...+.|+++.||..|+.+|+.+.. ...++.+...+.|+++.+|..++.+++.+.. ...+
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 140 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 140 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 55677788999999999999999887532 3467888888899999999999999998753 3577
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150 342 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 342 ~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 408 (412)
+.+..+++|+++.||..++.+|+.+.. +..++.|..+++|+++.||..|.++++.+...
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHhh
Confidence 888899999999999999999998853 46788888888899999999999999887653
No 45
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.73 E-value=7.2e-16 Score=125.61 Aligned_cols=183 Identities=22% Similarity=0.250 Sum_probs=107.4
Q ss_pred HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccch
Q 015150 27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV 106 (412)
Q Consensus 27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l 106 (412)
...+.+.++++|+++.+|..|+..++.+.. ...++.+.+++.|+++.+|..++..|+.+.. ...
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~~ 77 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERA 77 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGG
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHH
Confidence 344555555666666666666666665442 1344555555566666666666666665532 345
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHH
Q 015150 107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP 186 (412)
Q Consensus 107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 186 (412)
++.+.++++|+++.||..|+.+|+.+.. ...++.+..++.|+++.||..++.+++.+.. ...++
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~ 141 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE 141 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence 5666666666666666666666665533 1245555666666666666666666666542 24455
Q ss_pred HHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHH
Q 015150 187 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 249 (412)
Q Consensus 187 ~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l 249 (412)
.+..+++|+++.||..++.+|+.+.. +..++.+..+++|+++.+|..+...+..+
T Consensus 142 ~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 142 PLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 66666666666666666666666531 23455555555666666666666555543
No 46
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.70 E-value=1.1e-13 Score=139.12 Aligned_cols=407 Identities=12% Similarity=0.065 Sum_probs=251.6
Q ss_pred chhHHHHHHHHHHHHHHh-h--------hhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHH
Q 015150 2 PMVRRSAATNLGKFAATV-E--------AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIV 72 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~-~--------~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~ 72 (412)
+.+|..|+..|.+.++.. . ++.....+-..+...+.++...+|...+.++..++..--++ .++.+++.+.
T Consensus 51 ~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~-~Wp~ll~~L~ 129 (960)
T 1wa5_C 51 LSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPD-RWPTLLSDLA 129 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc-chhHHHHHHH
Confidence 468999999999988642 1 11223334444444444455789999999999999874343 5789999999
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHhCCCCc-----------ccchHH----HH---HHhcCCChH---HHH------HHH
Q 015150 73 NFSQDKSWRVRYMVANQLYELCEAVGPEPT-----------RSDVVP----AY---VRLLRDNEA---EVR------IAA 125 (412)
Q Consensus 73 ~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~-----------~~~l~~----~l---~~~l~d~~~---~vr------~~a 125 (412)
+.+++++...+..++.++..+++....... .....| .+ .+.+.++.. .+| ..+
T Consensus 130 ~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 209 (960)
T 1wa5_C 130 SRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVL 209 (960)
T ss_dssp TTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999888888999999999999886542111 011122 22 222454322 233 334
Q ss_pred HHHHHHHHHhhCHHHH---HHhhhhhHHHhcc--------C---C----cHHHHHHHHHHHHhcCcccChhH--HHHhhH
Q 015150 126 AGKVTKICRILNPELA---IQHILPCVKELSS--------D---S----SQHVRSALATVIMGMAPILGKDA--TIEQLL 185 (412)
Q Consensus 126 ~~~l~~l~~~~~~~~~---~~~~~~~l~~~~~--------d---~----~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~ 185 (412)
++++..+...--++.. ....++.+.+.+. | . .+.+|..+++++..+....++.. ....++
T Consensus 210 ~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~ 289 (960)
T 1wa5_C 210 IKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFI 289 (960)
T ss_dssp HHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443221112211 1223344444331 1 1 14688899999888876554432 234556
Q ss_pred HHHHHhhc-----ccChHHHHHHHHHHHHHHHhhc-hh-----hHHhhHH-HHHHHHh----------------------
Q 015150 186 PIFLSLLK-----DEFPDVRLNIISKLDQVNQVIG-ID-----LLSQSLL-PAIVELA---------------------- 231 (412)
Q Consensus 186 ~~l~~~l~-----d~~~~vr~~~~~~l~~i~~~~~-~~-----~~~~~~~-~~l~~~~---------------------- 231 (412)
+.+.+.+. ..++.++..++..+..+++.-. .. .+...++ +.+...+
T Consensus 290 ~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~ 369 (960)
T 1wa5_C 290 QITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDL 369 (960)
T ss_dssp HHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhcc
Confidence 66666554 3456788888888877754311 01 1122233 2222221
Q ss_pred -cCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc------CchhHHHHHHHHHHHHHHHHhC-hh--------
Q 015150 232 -EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK------DKVYSIRDAAANNVKRLAEEFG-PD-------- 295 (412)
Q Consensus 232 -~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~-~~-------- 295 (412)
.+..+..|.++...+..++...+ +...+.+++.+.+.+. +.+|..|++|+.+++.+..... .+
T Consensus 370 e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~ 448 (960)
T 1wa5_C 370 EGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNN 448 (960)
T ss_dssp HC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCT
T ss_pred CcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccc
Confidence 12335789999999999999988 4455667777777776 6789999999999999975421 11
Q ss_pred --hhhhhhHHHHHhhhcCC---chHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh
Q 015150 296 --WAMQHIVPQVLEMINNP---HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 370 (412)
Q Consensus 296 --~~~~~~l~~l~~~~~~~---~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 370 (412)
.+...+...+...+.++ +..+|.+++++++++++.+..+ +...++|.+++.+.|+++.||..|+.++..+....
T Consensus 449 ~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 449 LLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp TCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred cccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 11111122333444566 7899999999999999988654 68889999999999999999999999999988642
Q ss_pred c----------hH---HHHhhHHHHHHhhcCCC-----CccHHHHHHHHHHHhHHhhhC
Q 015150 371 D----------QS---VVEKSIRPCLVELSEDP-----DVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 371 ~----------~~---~~~~~i~~~l~~l~~d~-----~~~vr~~a~~al~~~~~~~~~ 411 (412)
+ .+ .+.+.+++.+..+++.. .......+.++++.++..+++
T Consensus 528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~ 586 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED 586 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred cccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHH
Confidence 2 22 23455555555655443 111335788888888777654
No 47
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.69 E-value=1.9e-14 Score=132.14 Aligned_cols=373 Identities=12% Similarity=0.075 Sum_probs=207.6
Q ss_pred HHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC---CCCc
Q 015150 29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPT 102 (412)
Q Consensus 29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~---~~~~ 102 (412)
+|.+..+++++++.++..|+..+..++..-++ .......+|.+.+++.++++.++..++.+|.+++.... ....
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45566666666667777777777776644332 11223366666666666666777777777766664200 0011
Q ss_pred ccchHHHHHHhcC-CChHHHHHHHHHHHHHHHHhhCH-HHHHHhhhhhHHHhc--------cCCcHHHHH--------HH
Q 015150 103 RSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNP-ELAIQHILPCVKELS--------SDSSQHVRS--------AL 164 (412)
Q Consensus 103 ~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~--------~d~~~~vr~--------~~ 164 (412)
....+|.+.+++. ++++.++..++.+|..++..-.. ..+.+..+|.+.+++ .+++...|. .+
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 2334666666666 55666666666666666654221 123335666666666 233444554 56
Q ss_pred HHHHHhcCcccChhH---HHH--hhHHHHHHhhcc------cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcC
Q 015150 165 ATVIMGMAPILGKDA---TIE--QLLPIFLSLLKD------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 233 (412)
Q Consensus 165 ~~~l~~l~~~~~~~~---~~~--~l~~~l~~~l~d------~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d 233 (412)
++++..++.. ++. ..+ ..+|.+..++++ .+..++..++..+..+......+. ......+......
T Consensus 164 ~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~--~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 164 TGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEV--PTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHS--CCHHHHHHHTC--
T ss_pred HHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccC--cchhhhccccccc
Confidence 6666666643 211 111 455666666654 233444444444444432211000 0000000000000
Q ss_pred CCchHHHHHHHHhhHHHh-----------------hhCh-hhHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHhCh
Q 015150 234 RHWRVRLAIIEYIPLLAS-----------------QLGV-GFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGP 294 (412)
Q Consensus 234 ~~~~vr~~~~~~l~~l~~-----------------~~~~-~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~ 294 (412)
.. .......+++.... .-|. ..+....++.+..+|.+ +++.++++|+.+|..+...-+.
T Consensus 240 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 240 AY--TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred cc--ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 00 00000001111000 0011 12234567777787764 4588999999999998753322
Q ss_pred -------hhh-hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh-HHHHhhHHHHHhhcCCCCc------hHHHHH
Q 015150 295 -------DWA-MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDRVP------NIKFNV 359 (412)
Q Consensus 295 -------~~~-~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~~l~d~~~------~vR~~~ 359 (412)
..+ ....+|.+.+++.+++..++..++.++..++..-... .+....+|.++++|.+.++ ++...+
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 112 2467899999999999999999999999997643222 3456789999999987644 577788
Q ss_pred HHHHHHHhhhhchH---HHHhhHHHHHHhhcCCC-CccHHHHHHHHHHHhHH
Q 015150 360 AKVLQSLIPIVDQS---VVEKSIRPCLVELSEDP-DVDVRFFATQALQSKDQ 407 (412)
Q Consensus 360 ~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~-~~~vr~~a~~al~~~~~ 407 (412)
+.+++.+...-... ......+|.|..+++.+ +.++++.|...+..+..
T Consensus 398 l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 88998887532221 22356888888888887 88999999999987753
No 48
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.69 E-value=8.7e-14 Score=128.72 Aligned_cols=360 Identities=15% Similarity=0.143 Sum_probs=246.2
Q ss_pred HHhHHHHhhccC-chhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHH
Q 015150 48 VEGCGALGKLLE-PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRI 123 (412)
Q Consensus 48 ~~~l~~i~~~~~-~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~ 123 (412)
+-.|..+.+.-+ +..+...-+|.+.+++.++++.++..++.+|..++..... .....-.+|.+.+++.+++..++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~ 108 (584)
T 3l6x_A 29 LASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHL 108 (584)
T ss_dssp -----------CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHH
T ss_pred HHHHHHHHhcCCCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHH
Confidence 344555544322 3334556788888888888999999999999888742111 112234689999999999999999
Q ss_pred HHHHHHHHHHHhhCHH----HHHHhhhhhHHHhccC-CcHHHHHHHHHHHHhcCcccC-hhHHHHhhHHHHHHhhc----
Q 015150 124 AAAGKVTKICRILNPE----LAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILG-KDATIEQLLPIFLSLLK---- 193 (412)
Q Consensus 124 ~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~---- 193 (412)
.|+.+|..++..-+++ ......+|.+.+++.. .+..++..++.++..++..-. +..+....+|.+.+++.
T Consensus 109 ~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~s 188 (584)
T 3l6x_A 109 GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHS 188 (584)
T ss_dssp HHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccc
Confidence 9999999998632222 3345578999998875 678899999999988876321 22223445677776551
Q ss_pred --------------ccChHHHHHHHHHHHHHHHhhc--hhhHH--hhHHHHHHHHhc------CCCchHHHHHHHHhhHH
Q 015150 194 --------------DEFPDVRLNIISKLDQVNQVIG--IDLLS--QSLLPAIVELAE------DRHWRVRLAIIEYIPLL 249 (412)
Q Consensus 194 --------------d~~~~vr~~~~~~l~~i~~~~~--~~~~~--~~~~~~l~~~~~------d~~~~vr~~~~~~l~~l 249 (412)
.+++.|+..+..+|..+...-. ...+. ..+++.++.++. +.+.+....++..|..+
T Consensus 189 g~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NL 268 (584)
T 3l6x_A 189 GWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNL 268 (584)
T ss_dssp CCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHh
Confidence 1257899999999988865321 11111 234556666544 34567777777777666
Q ss_pred HhhhC---------------------------hh-hHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhCh---h--
Q 015150 250 ASQLG---------------------------VG-FFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGP---D-- 295 (412)
Q Consensus 250 ~~~~~---------------------------~~-~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~---~-- 295 (412)
+.... .+ .+....++.++.++. ..++.++++|+.+|..++..-+. .
T Consensus 269 s~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~ 348 (584)
T 3l6x_A 269 SYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIR 348 (584)
T ss_dssp HTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHH
T ss_pred hccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHH
Confidence 54321 11 122456788888885 45789999999999998742211 1
Q ss_pred -hh-hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh-HHHHhhHHHHHhhcCCC--------CchHHHHHHHHHH
Q 015150 296 -WA-MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDR--------VPNIKFNVAKVLQ 364 (412)
Q Consensus 296 -~~-~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~~l~d~--------~~~vR~~~~~~l~ 364 (412)
.+ ....+|.|.+++.+++..++..++.+|+.++..-... .+....+|.++.+|.+. ...++..++.+|+
T Consensus 349 ~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~ 428 (584)
T 3l6x_A 349 SALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTIN 428 (584)
T ss_dssp HHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHH
Confidence 11 2457899999999999999999999999998654433 46678999999999876 3568889999999
Q ss_pred HHhhhhch---HHHHhhHHHHHHhhcCCC--CccHHHHHHHHHHHhHH
Q 015150 365 SLIPIVDQ---SVVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQ 407 (412)
Q Consensus 365 ~l~~~~~~---~~~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~~~~ 407 (412)
++...-.. .......+|.|..++.+. ...+++.|+.++..++.
T Consensus 429 NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 429 EVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 88643111 234567889999988775 78899999999998874
No 49
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.67 E-value=2.6e-14 Score=120.76 Aligned_cols=225 Identities=12% Similarity=0.096 Sum_probs=157.4
Q ss_pred HHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC---hhhH
Q 015150 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF 258 (412)
Q Consensus 185 ~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~ 258 (412)
+|.+.++++++++++|..++.+|..++..-+. .......+|.+.++++++++.+|..++.++..++.... ....
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45666666666677777777777666544221 11223467777777777777777777777777664311 1112
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---hhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh-
Q 015150 259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE- 334 (412)
Q Consensus 259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~- 334 (412)
....+|.+..+++++++.+|..|+.+|+.+..... ........+|.+.+++.++++.+|..++.+++.++......
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 23467788888888888888888888888874211 11123457888888888888899999999999987643321
Q ss_pred --HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch---HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150 335 --ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 409 (412)
Q Consensus 335 --~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~ 409 (412)
......+|.+..++.++++.+|..++.+|+.++..-.. ......++|.+..++.++++++|..|..++..+...-
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 23456889999999999999999999999999753221 1234567888888888999999999999999887654
No 50
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.4e-15 Score=124.77 Aligned_cols=201 Identities=15% Similarity=0.142 Sum_probs=121.3
Q ss_pred HhhHHHHHHhhcccChHHHHHHHHHHHH-HHHhhch-h---hHHhhHHHHHHHHh-cCCCchHHHHHHHHhhHHHhhhC-
Q 015150 182 EQLLPIFLSLLKDEFPDVRLNIISKLDQ-VNQVIGI-D---LLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLG- 254 (412)
Q Consensus 182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~-i~~~~~~-~---~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~- 254 (412)
..+-+.|.+.+.+.++.-|..++.++.. ++..... . .-...++..+.+.+ +|.+..+|..++.+++.++..++
T Consensus 15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 4444556666666667777666666666 6543221 0 11134555666666 56666777777777777776665
Q ss_pred hh---hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh---hhhhHHHHHhhhcCCchHHHHHHHHHHHHhc
Q 015150 255 VG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVLEMINNPHYLYRMTILQAISLLA 328 (412)
Q Consensus 255 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~ 328 (412)
+. .+...++|.++..++|....||.++..++..+++..++... .+.+++.+...+++++|++|+.++.+++.+.
T Consensus 95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 43 23345666666666666666777666666666666544221 2256666666666666777777777777666
Q ss_pred cccch--h---HHH-HhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhh
Q 015150 329 PVMGS--E---ITC-SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL 386 (412)
Q Consensus 329 ~~~~~--~---~~~-~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l 386 (412)
...+. . .+. +.++|.+.++++|+.+.||.++..+++.+...+|.. .+.|.+..+
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~----~~~p~l~~L 234 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN----TFVKTLEHL 234 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG----GGHHHHHHS
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHH
Confidence 66553 2 244 666677777777777777777777777776666653 344555444
No 51
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4e-15 Score=124.35 Aligned_cols=190 Identities=13% Similarity=0.178 Sum_probs=146.9
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhhH-HHhhh---C--hhhHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHhC
Q 015150 221 QSLLPAIVELAEDRHWRVRLAIIEYIPL-LASQL---G--VGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFG 293 (412)
Q Consensus 221 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~-l~~~~---~--~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~ 293 (412)
..+-+.+.+.+.+++|+.|.+++..+.. +.+.. - ...+ ..++..+.+.+ +|.+..||..|+.+++.+++.++
T Consensus 15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~ 93 (249)
T 2qk1_A 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLK 93 (249)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHC
T ss_pred hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 3344445566788899999998888888 76432 1 2222 34677778888 78888899999999999888886
Q ss_pred -h--h-hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh-H--HHHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150 294 -P--D-WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-I--TCSQLLPVVINASKDRVPNIKFNVAKVLQSL 366 (412)
Q Consensus 294 -~--~-~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 366 (412)
+ . .+...++|.+++.++|....+|.++..++..+++.+++. . +.+.+++.++..+++++|.+|..++.+++.+
T Consensus 94 ~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 94 TPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNAS 173 (249)
T ss_dssp TTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3 2 467778899998888888888888888888888777432 1 2567888888888888899999999999888
Q ss_pred hhhhch--H---HHH-hhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150 367 IPIVDQ--S---VVE-KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 367 ~~~~~~--~---~~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 411 (412)
....+. . .+. ..++|.+.++++|++++||..|.++++.++..+|+
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 877662 2 355 78888888888999999999999999998888885
No 52
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.66 E-value=1.2e-14 Score=122.83 Aligned_cols=225 Identities=16% Similarity=0.122 Sum_probs=173.3
Q ss_pred hhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC---hh
Q 015150 183 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VG 256 (412)
Q Consensus 183 ~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~ 256 (412)
.-.+.+...++++++++|..++.+|..+...-.. .......+|.+.+++.++++.+|..++.++..++.... ..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4467788888888899999999988766554111 12234678899999999999999999999888875321 11
Q ss_pred hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh---hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch
Q 015150 257 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS 333 (412)
Q Consensus 257 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 333 (412)
......+|.+..+++++++.+|..|+.+|+.+....... ......+|.+.+++.++++.+|..++.+++.++.....
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 122347889999999999999999999999987533221 22346889999999999999999999999999864332
Q ss_pred h---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch---HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 334 E---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 334 ~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
. .....++|.+..++.++++.+|..++.+|+.++..-.. .......+|.|..++.++++++|..|..++..+..
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 2 23457899999999999999999999999999853222 12345688999999999999999999999998764
No 53
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.65 E-value=3.4e-13 Score=124.76 Aligned_cols=345 Identities=14% Similarity=0.094 Sum_probs=242.2
Q ss_pred hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC-
Q 015150 24 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP- 99 (412)
Q Consensus 24 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~- 99 (412)
+...-+|.+..++.++++.++..|+..+..++....+ .......+|.+.+++.+++..++..++.+|.+++..-+.
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 3444567777778888889999999999888864322 122344789999999999999999999999999852111
Q ss_pred ---CCcccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCH-HHHHHhhhhhHHHhcc------------------CC
Q 015150 100 ---EPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNP-ELAIQHILPCVKELSS------------------DS 156 (412)
Q Consensus 100 ---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~~------------------d~ 156 (412)
.....-.+|.+.+++.+ .+.+++..+..+|..++..-.. ..+....+|.+.+++. ..
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccc
Confidence 11223578999999886 5788999999999998764322 2333456777777541 13
Q ss_pred cHHHHHHHHHHHHhcCcccC--hhHHH--HhhHHHHHHhhcc------cChHHHHHHHHHHHHHHHhhc-----------
Q 015150 157 SQHVRSALATVIMGMAPILG--KDATI--EQLLPIFLSLLKD------EFPDVRLNIISKLDQVNQVIG----------- 215 (412)
Q Consensus 157 ~~~vr~~~~~~l~~l~~~~~--~~~~~--~~l~~~l~~~l~d------~~~~vr~~~~~~l~~i~~~~~----------- 215 (412)
+..|+..++.+|.+++..-. ..... ..+++.+..++++ .+......++.+|..+.....
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 57999999999999986431 11111 3455666666543 345667777777765543321
Q ss_pred ----------------hhh-HHhhHHHHHHHHhc-CCCchHHHHHHHHhhHHHhhhChh------h-HHHHHHHHHHHHh
Q 015150 216 ----------------IDL-LSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG------F-FDDKLGALCMQWL 270 (412)
Q Consensus 216 ----------------~~~-~~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~------~-~~~~l~~~l~~~l 270 (412)
.+. +....++.+..++. ..++.++..++.+|..++..-+.. . .....+|.+..+|
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 111 12345677777775 467899999999999887532211 1 1245689999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHhCh-hhhhhhhHHHHHhhhcCC--------chHHHHHHHHHHHHhccccchh---HHHH
Q 015150 271 KDKVYSIRDAAANNVKRLAEEFGP-DWAMQHIVPQVLEMINNP--------HYLYRMTILQAISLLAPVMGSE---ITCS 338 (412)
Q Consensus 271 ~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~~~~~--------~~~~r~~~~~~l~~l~~~~~~~---~~~~ 338 (412)
..++..++..|+.+|..+...-.. ..+....+|.|..++.+. +..+...++.+++.++..-... ....
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~ 444 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET 444 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 999999999999999999875433 334567889999998876 3567888999998886432221 2455
Q ss_pred hhHHHHHhhcCCC--CchHHHHHHHHHHHHhh
Q 015150 339 QLLPVVINASKDR--VPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 339 ~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~ 368 (412)
..+|.+..++.+. .+.++..|+.+|..+..
T Consensus 445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp THHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 6899999999886 88999999999998864
No 54
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.65 E-value=6.8e-14 Score=128.43 Aligned_cols=361 Identities=10% Similarity=0.049 Sum_probs=230.5
Q ss_pred CchhHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhh
Q 015150 1 MPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNF 74 (412)
Q Consensus 1 ~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l 74 (412)
++.+|..++.+|..++...+. .......+|.+..+++++++.++..|+.+|..++...++ .......+|.+.++
T Consensus 15 ~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~l 94 (457)
T 1xm9_A 15 DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL 94 (457)
T ss_dssp CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence 367899999999998854332 123455789999999999999999999999999975222 12234478899999
Q ss_pred cc-CCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhc--------CCChHHHHH--------HHHHHHHHHHHh
Q 015150 75 SQ-DKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLL--------RDNEAEVRI--------AAAGKVTKICRI 135 (412)
Q Consensus 75 ~~-d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l--------~d~~~~vr~--------~a~~~l~~l~~~ 135 (412)
+. ++++.++..++.+|..++.. .... .....+|.+.+++ .++....|. .|+.+|..++..
T Consensus 95 L~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~ 173 (457)
T 1xm9_A 95 LRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA 173 (457)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS
T ss_pred HhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC
Confidence 98 88999999999999999975 2211 1126789999999 445567777 899999999875
Q ss_pred hCHH---HHHH--hhhhhHHHhccC------CcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHH
Q 015150 136 LNPE---LAIQ--HILPCVKELSSD------SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNII 204 (412)
Q Consensus 136 ~~~~---~~~~--~~~~~l~~~~~d------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~ 204 (412)
++ ...+ .++|.+..++.+ .+..++..++..+..+......+. ......+...+.... ......
T Consensus 174 --~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~ 247 (457)
T 1xm9_A 174 --DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEV--PTRYRQLEYNARNAY--TEKSST 247 (457)
T ss_dssp --HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHS--CCHHHHHHHTC------------
T ss_pred --HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccC--cchhhhccccccccc--cccccc
Confidence 33 2222 467778888875 455667777777777764321100 000000111111000 000011
Q ss_pred HHHHHHHH-----------------hhchh-hHHhhHHHHHHHHhcC-CCchHHHHHHHHhhHHHhhhChh-------hH
Q 015150 205 SKLDQVNQ-----------------VIGID-LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG-------FF 258 (412)
Q Consensus 205 ~~l~~i~~-----------------~~~~~-~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~-------~~ 258 (412)
.+++.... .-+.+ .+....++.+..++.+ +++.++..++.++..++..-+.. .+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v 327 (457)
T 1xm9_A 248 GCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIG 327 (457)
T ss_dssp ------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHH
T ss_pred chhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHH
Confidence 11111100 00111 1224456777776654 46899999999998887543221 11
Q ss_pred -HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh-hhhhhhHHHHHhhhcCCc------hHHHHHHHHHHHHhccc
Q 015150 259 -DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNPH------YLYRMTILQAISLLAPV 330 (412)
Q Consensus 259 -~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~~~~~~------~~~r~~~~~~l~~l~~~ 330 (412)
....+|.+.++|.+++..++..|+.+|..+...-... .+....+|.+.+++.+.+ ..+...++.+++.+...
T Consensus 328 ~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~ 407 (457)
T 1xm9_A 328 LKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMAS 407 (457)
T ss_dssp TTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhc
Confidence 1346799999999999999999999999997643222 234568899999888753 35777888888888643
Q ss_pred cchh---HHHHhhHHHHHhhcCCC-CchHHHHHHHHHHHHhh
Q 015150 331 MGSE---ITCSQLLPVVINASKDR-VPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 331 ~~~~---~~~~~il~~l~~~l~d~-~~~vR~~~~~~l~~l~~ 368 (412)
-+.. ......+|.+.+++.++ ++.+++.|+++|..++.
T Consensus 408 ~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 408 QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 3321 22345889999999988 89999999999998764
No 55
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.64 E-value=2.9e-14 Score=120.51 Aligned_cols=225 Identities=12% Similarity=0.084 Sum_probs=167.9
Q ss_pred HHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC---CCCc
Q 015150 29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPT 102 (412)
Q Consensus 29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~---~~~~ 102 (412)
+|.+..++.++++.+|..|+.++..++...+. .......++.+.++++++++.+|..++.+|+.++.... ....
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 56667778888899999999999999876542 12334588999999999999999999999999985311 1112
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH---HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh--
Q 015150 103 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-- 177 (412)
Q Consensus 103 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-- 177 (412)
....+|.+..+++++++.+|..++.+|..++...+. .......+|.+.+++.++++.+|..++.+++.++.....
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 235799999999999999999999999999853221 123345789999999999999999999999999864322
Q ss_pred -hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh
Q 015150 178 -DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 253 (412)
Q Consensus 178 -~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 253 (412)
.......+|.+..++.++++.+|..++.+|..++..-.. .......++.+.+++.++++.+|..++.++..+....
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 122346789999999998999999999999988753111 1112345677777777777777777777777666544
No 56
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.64 E-value=4.2e-13 Score=135.33 Aligned_cols=400 Identities=12% Similarity=0.063 Sum_probs=251.7
Q ss_pred chhHHHHHHHHHHHHHH----hhh---hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhh
Q 015150 2 PMVRRSAATNLGKFAAT----VEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF 74 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~----~~~---~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l 74 (412)
+.||..++..|.+.++. +++ ..+.+.+++.+....++ ...+|...+.++..++.+..+ .++.+++.+.+.
T Consensus 54 ~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~ 130 (971)
T 2x1g_F 54 QEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINT 130 (971)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTC--C------HHHHH
T ss_pred HHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHH
Confidence 57899999999998864 222 34567777777666544 367999999999999988555 567788888877
Q ss_pred ccCC------ChHHHHHHHHHHHHHHHHhC-CC-C------------cccchHHHHHHhcCC---C-----hHHHHHHHH
Q 015150 75 SQDK------SWRVRYMVANQLYELCEAVG-PE-P------------TRSDVVPAYVRLLRD---N-----EAEVRIAAA 126 (412)
Q Consensus 75 ~~d~------~~~vR~~~~~~l~~l~~~~~-~~-~------------~~~~l~~~l~~~l~d---~-----~~~vr~~a~ 126 (412)
++.+ ++..+..++..|..+.+... .+ . ..+.+++.+.+++.+ + .+.++..++
T Consensus 131 ~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al 210 (971)
T 2x1g_F 131 FQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAV 210 (971)
T ss_dssp HHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHH
Confidence 7654 56788899999988885321 11 0 112455555555432 1 137999999
Q ss_pred HHHHHHHH--hhCHHHHHHhhhhhHHHhc----------------cCCcHHHHHHHHHHHHhcCcccChh---HHHHhhH
Q 015150 127 GKVTKICR--ILNPELAIQHILPCVKELS----------------SDSSQHVRSALATVIMGMAPILGKD---ATIEQLL 185 (412)
Q Consensus 127 ~~l~~l~~--~~~~~~~~~~~~~~l~~~~----------------~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~ 185 (412)
+++..+.. .++.. ....+++.+.. + .+.++.+|..+++++..+...-... .....++
T Consensus 211 ~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~ 288 (971)
T 2x1g_F 211 KCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLI 288 (971)
T ss_dssp HHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHH
T ss_pred HHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHH
Confidence 99998887 35544 44556676665 3 2357799999999999887642211 1223444
Q ss_pred HHHHHh-------hcccC---hHHHHHHHHHHHHHHHh----hc---------hhhHHhhHHHHHHHHhcC-----CCch
Q 015150 186 PIFLSL-------LKDEF---PDVRLNIISKLDQVNQV----IG---------IDLLSQSLLPAIVELAED-----RHWR 237 (412)
Q Consensus 186 ~~l~~~-------l~d~~---~~vr~~~~~~l~~i~~~----~~---------~~~~~~~~~~~l~~~~~d-----~~~~ 237 (412)
|.+..+ ..+++ ++......+.+..++.. +. .......+++.+..+... .+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~ 368 (971)
T 2x1g_F 289 KMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEES 368 (971)
T ss_dssp HHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCT
T ss_pred HHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchh
Confidence 544432 23334 26666666666666532 11 011123455666665533 4678
Q ss_pred HHHHHHHHhhHHHhhh-C-------h------hhHHHHHHHHHHHHhc---Cc------------hhHHHHHHHHHHHHH
Q 015150 238 VRLAIIEYIPLLASQL-G-------V------GFFDDKLGALCMQWLK---DK------------VYSIRDAAANNVKRL 288 (412)
Q Consensus 238 vr~~~~~~l~~l~~~~-~-------~------~~~~~~l~~~l~~~l~---d~------------~~~vr~~a~~~l~~l 288 (412)
+...++..+..+++.. + . ..+...+++.++..+. |. ....|.++...+..+
T Consensus 369 v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~ 448 (971)
T 2x1g_F 369 CSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYC 448 (971)
T ss_dssp THHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHH
Confidence 8888888887776622 1 0 1122344555555442 11 124677888888888
Q ss_pred HHHhChhhhhhhhHHHHHhhhcC-----CchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhc-CCCCchHHHHHH
Q 015150 289 AEEFGPDWAMQHIVPQVLEMINN-----PHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINAS-KDRVPNIKFNVA 360 (412)
Q Consensus 289 ~~~~~~~~~~~~~l~~l~~~~~~-----~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l-~d~~~~vR~~~~ 360 (412)
...++ +...+.+++.+...+.. ++|+.|++++.+++.+++.+... ...+.+++.+..+. .|+++.||..++
T Consensus 449 ~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~ 527 (971)
T 2x1g_F 449 YDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTAL 527 (971)
T ss_dssp HTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHH
T ss_pred HHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHH
Confidence 77666 33445556665555543 68999999999999999887753 34556666444433 267899999999
Q ss_pred HHHHHHhhhhchH-HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150 361 KVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 361 ~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 410 (412)
++++.++..+... .+...++|.+...+ | +.|+..|+.|+..+++..+
T Consensus 528 ~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~ 575 (971)
T 2x1g_F 528 ETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ 575 (971)
T ss_dssp HHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH
Confidence 9999999887643 45567777777766 4 7899999999999987654
No 57
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.63 E-value=6.2e-12 Score=126.90 Aligned_cols=400 Identities=11% Similarity=0.060 Sum_probs=254.3
Q ss_pred chhHHHHHHHHHHHHHHh----hh---hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhh
Q 015150 2 PMVRRSAATNLGKFAATV----EA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF 74 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~----~~---~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l 74 (412)
+.||..++..|.+.++.. ++ ..+.+.+++.+....+ ....+|...+.++..++..--++. ++.+++.+.+.
T Consensus 72 ~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~-~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~ 149 (963)
T 2x19_B 72 PEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFAS-GSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRL 149 (963)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHH
Confidence 578999999999888642 22 3456667777665432 347799999999999998744443 67888888887
Q ss_pred ccC-----CChHHHHHHHHHHHHHHHHhCCC---------------CcccchHHHHHHhcCCCh--HHHHHHHHHHHHHH
Q 015150 75 SQD-----KSWRVRYMVANQLYELCEAVGPE---------------PTRSDVVPAYVRLLRDNE--AEVRIAAAGKVTKI 132 (412)
Q Consensus 75 ~~d-----~~~~vR~~~~~~l~~l~~~~~~~---------------~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l 132 (412)
+++ ++...+..++..|..+.+..... ...+.+++.+..++.+.+ ..++..+++++..+
T Consensus 150 ~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~w 229 (963)
T 2x19_B 150 FQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSW 229 (963)
T ss_dssp HCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHH
T ss_pred HhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 765 36678889999999888644211 112346666667666543 24888888888776
Q ss_pred HHhhCHH-HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh---HHHHhhHHHHHHh-------hcccChHHHH
Q 015150 133 CRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSL-------LKDEFPDVRL 201 (412)
Q Consensus 133 ~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~-------l~d~~~~vr~ 201 (412)
.. ++.. .....+++.+.+.+. ++.+|..+++++..+....... .....+++.+... ..+.+.+...
T Consensus 230 i~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~ 306 (963)
T 2x19_B 230 VQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSH 306 (963)
T ss_dssp HT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHH
T ss_pred Hc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHH
Confidence 65 2221 111346677766664 5778999999999887643211 1223333433322 2333445555
Q ss_pred HHHHHHHHHHHhhch--------hhHHhhHHHHHHHHhcC-----CCchHHHHHHHHhhHHHhhhC----------hh--
Q 015150 202 NIISKLDQVNQVIGI--------DLLSQSLLPAIVELAED-----RHWRVRLAIIEYIPLLASQLG----------VG-- 256 (412)
Q Consensus 202 ~~~~~l~~i~~~~~~--------~~~~~~~~~~l~~~~~d-----~~~~vr~~~~~~l~~l~~~~~----------~~-- 256 (412)
...+.+..++..... ......++..+..+..+ .++.+...++..+..+++... ..
T Consensus 307 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~ 386 (963)
T 2x19_B 307 GICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVY 386 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 555555555433111 11123455666666554 356666666666666655220 01
Q ss_pred -hHHHHHHHHHHHHhcCc----------h-----hHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhh----cCCchHH
Q 015150 257 -FFDDKLGALCMQWLKDK----------V-----YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI----NNPHYLY 316 (412)
Q Consensus 257 -~~~~~l~~~l~~~l~d~----------~-----~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~----~~~~~~~ 316 (412)
.+...+++.++..+.-+ + .+.|.++...+..+....+.+ ..+.+++.+...+ .+.+|+.
T Consensus 387 ~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~ 465 (963)
T 2x19_B 387 RPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQH 465 (963)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHH
Confidence 12233455555544211 0 124677777777777766644 3344555665555 5678999
Q ss_pred HHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH-HHHhhHHHHHHhhcCCCCcc
Q 015150 317 RMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVD 393 (412)
Q Consensus 317 r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~~~~ 393 (412)
|++++.+++.+++.+..+ .+...+++.+.. +.++++.||..++++++.+...+... .+...+++.+...+.| +.
T Consensus 466 ~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~ 542 (963)
T 2x19_B 466 TEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PE 542 (963)
T ss_dssp HHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GG
T ss_pred HHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--ch
Confidence 999999999999887653 345566665444 45568889999999999998876542 4667788888877765 79
Q ss_pred HHHHHHHHHHHhHHhhh
Q 015150 394 VRFFATQALQSKDQVMM 410 (412)
Q Consensus 394 vr~~a~~al~~~~~~~~ 410 (412)
|+..|+.++..+++..+
T Consensus 543 V~~~A~~al~~l~~~~~ 559 (963)
T 2x19_B 543 LSVSSVSTLKKICRECK 559 (963)
T ss_dssp GHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987654
No 58
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.62 E-value=1.5e-13 Score=138.53 Aligned_cols=401 Identities=9% Similarity=0.058 Sum_probs=250.9
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCC------chHHHHHHHHhHHHHhhcc---Cch-----------
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD------QDSVRLLAVEGCGALGKLL---EPQ----------- 61 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~------~~~~r~~a~~~l~~i~~~~---~~~----------- 61 (412)
+.||.+++.++..+++...+ -|+.+++.+..+++++ ++..+..++..+..+.+.. ...
T Consensus 99 ~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~ 176 (971)
T 2x1g_F 99 KIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIA 176 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHH
Confidence 56899999999999987654 5777888887777664 5667888888888777531 110
Q ss_pred hhhhhhHHHHHhhccC---C-----ChHHHHHHHHHHHHHHHH--hCCCCcccchHHHHHHhc----------------C
Q 015150 62 DCVAHILPVIVNFSQD---K-----SWRVRYMVANQLYELCEA--VGPEPTRSDVVPAYVRLL----------------R 115 (412)
Q Consensus 62 ~~~~~l~~~l~~l~~d---~-----~~~vR~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~l----------------~ 115 (412)
...+.+++++.+++++ + ++.++..+++++..+... .+.. ....+++.+.. + .
T Consensus 177 ~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~ 254 (971)
T 2x1g_F 177 KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGCMT 254 (971)
T ss_dssp TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CCCC
T ss_pred HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhccccccccccccC
Confidence 1123455555555432 1 137999999999988773 3333 44567777766 4 1
Q ss_pred CChHHHHHHHHHHHHHHHHhhCH---HHHHHhhhhhHHH-------hccCCc---HHHHHHHHHHHHhcCcc----cC--
Q 015150 116 DNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKE-------LSSDSS---QHVRSALATVIMGMAPI----LG-- 176 (412)
Q Consensus 116 d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~-------~~~d~~---~~vr~~~~~~l~~l~~~----~~-- 176 (412)
++++.+|..|+.++..+...... ......++|.+.. ...+.+ ......+++.+..+++. +.
T Consensus 255 ~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 255 ADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25689999999999998874221 1222333444332 223334 25666677777666532 11
Q ss_pred -------hhHHHHhhHHHHHHhhc-----ccChHHHHHHHHHHHHHHHhh-c-------h---h---hHHhhHHHHHHHH
Q 015150 177 -------KDATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVI-G-------I---D---LLSQSLLPAIVEL 230 (412)
Q Consensus 177 -------~~~~~~~l~~~l~~~l~-----d~~~~vr~~~~~~l~~i~~~~-~-------~---~---~~~~~~~~~l~~~ 230 (412)
.......+++.+..+.. ..++++...++..+..+++.. + . . .....+++.+...
T Consensus 335 ~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 414 (971)
T 2x1g_F 335 ITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRK 414 (971)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 01112344555555442 246788888888887776622 1 0 0 1122333443333
Q ss_pred hc---CC---Cc---------hHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHH
Q 015150 231 AE---DR---HW---------RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD-----KVYSIRDAAANNVKRLAE 290 (412)
Q Consensus 231 ~~---d~---~~---------~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~l~~ 290 (412)
+. |. +| ..|..+...+..++...|. ...+.+.+.+...+.. .+|..|++++.+++.+.+
T Consensus 415 ~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae 493 (971)
T 2x1g_F 415 SEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND-YILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAE 493 (971)
T ss_dssp TSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTT
T ss_pred hcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHh
Confidence 31 11 11 3677788888888887773 4455567776666654 688899999999999887
Q ss_pred HhChhh--hhhhhHHHHHhhh-cCCchHHHHHHHHHHHHhccccchh-HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150 291 EFGPDW--AMQHIVPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 366 (412)
Q Consensus 291 ~~~~~~--~~~~~l~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 366 (412)
...... ....+++.+..+. .|++..+|.+++++++++++.++.. .+...++|.++..+ | +.|+..++.++..+
T Consensus 494 ~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l 570 (971)
T 2x1g_F 494 HFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKEL 570 (971)
T ss_dssp C------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHH
T ss_pred hcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHH
Confidence 664321 2234455333333 2567899999999999999887743 47788899999888 4 78999999999999
Q ss_pred hhhhchH--HHHhhHHHHHHhhcCC--CCccHHHHHHHHHHHhHHhhh
Q 015150 367 IPIVDQS--VVEKSIRPCLVELSED--PDVDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 367 ~~~~~~~--~~~~~i~~~l~~l~~d--~~~~vr~~a~~al~~~~~~~~ 410 (412)
.+..+.. .+.+.++..+..+++. .+.+.+..+.++++.++..++
T Consensus 571 ~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 571 CRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 9776553 3445666666665555 467899999999999987654
No 59
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.61 E-value=2.2e-11 Score=123.53 Aligned_cols=397 Identities=11% Similarity=0.094 Sum_probs=240.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhc----cCch---hhhhhhHHHHHhhc
Q 015150 3 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL----LEPQ---DCVAHILPVIVNFS 75 (412)
Q Consensus 3 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~----~~~~---~~~~~l~~~l~~l~ 75 (412)
..|++|-+.|..+-+. +..+..+..++.. +.++.+|..|+..+.+.... ++++ ..+..++..+.+..
T Consensus 31 ~~r~~Ae~~L~~~~~~---p~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~ 104 (1049)
T 3m1i_C 31 VQQKQAQEILTKFQDN---PDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMC 104 (1049)
T ss_dssp HHHHHHHHHHHHHHHS---TTGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC---chHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhC
Confidence 3577777777665432 2345555555433 55778999999999887753 3332 23444555555544
Q ss_pred cCC-----ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH------------
Q 015150 76 QDK-----SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP------------ 138 (412)
Q Consensus 76 ~d~-----~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------------ 138 (412)
.++ +..+|...+.+++.++..... ..|+++++.+.+.++ .++..+..++..|..+.+.+..
T Consensus 105 ~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~ 182 (1049)
T 3m1i_C 105 QDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKAL 182 (1049)
T ss_dssp HCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHH
T ss_pred CccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 333 478999999999999987655 447889999998886 4556677778888777653320
Q ss_pred ---HHH---HHhhhhhHHHhcc-CCcHHHHHHHHHHHHhcCcccChhH-HHHhhHHHHHH-hhcccChHHHHHHHHHHHH
Q 015150 139 ---ELA---IQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKDA-TIEQLLPIFLS-LLKDEFPDVRLNIISKLDQ 209 (412)
Q Consensus 139 ---~~~---~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~-~l~d~~~~vr~~~~~~l~~ 209 (412)
+.+ ...+++.+...++ ..+..++..+++++.......+... ....+++.+.+ ++. ++++|..++.++..
T Consensus 183 ~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~ 260 (1049)
T 3m1i_C 183 HLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTE 260 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHH
Confidence 111 2223344444443 2356677777777766554433221 11223333221 111 23333333333322
Q ss_pred HHHh---------------------------------------------------------------hc--------hhh
Q 015150 210 VNQV---------------------------------------------------------------IG--------IDL 218 (412)
Q Consensus 210 i~~~---------------------------------------------------------------~~--------~~~ 218 (412)
+... .. ...
T Consensus 261 i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (1049)
T 3m1i_C 261 VSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRE 340 (1049)
T ss_dssp HHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred HHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHH
Confidence 2211 00 000
Q ss_pred HHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh-----Chh---hHHHHHHHHHHHHhcCc-----------------
Q 015150 219 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-----GVG---FFDDKLGALCMQWLKDK----------------- 273 (412)
Q Consensus 219 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-----~~~---~~~~~l~~~l~~~l~d~----------------- 273 (412)
....+++.+......++..+...+++.+..+.+.+ ... .+...+++.++..+.-+
T Consensus 341 ~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~ 420 (1049)
T 3m1i_C 341 LLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREF 420 (1049)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECS
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhh
Confidence 11233455555555667777777777777776622 111 23344566666544110
Q ss_pred -----hhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhc--CCchHHHHHHHHHHHHhccccchh---HHHHhhHHH
Q 015150 274 -----VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPV 343 (412)
Q Consensus 274 -----~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~ 343 (412)
.+..|.++...|..+.. .+.+.....+.+.+.+.+. ..+|+.|++++.+++.+++.++.. .+...+++.
T Consensus 421 ~~d~d~~~~~~~~~~~L~~l~~-~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~ 499 (1049)
T 3m1i_C 421 VKESDTIQLYKSEREVLVYLTH-LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD 499 (1049)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHH
Confidence 12456667777777764 3444444556666666664 467999999999999999877654 346667777
Q ss_pred HHhhcC-----CCCchHHHHHHHHHHHHhhhhch-HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150 344 VINASK-----DRVPNIKFNVAKVLQSLIPIVDQ-SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 344 l~~~l~-----d~~~~vR~~~~~~l~~l~~~~~~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 410 (412)
+..+.. |+.+.||..++.+++.+...+.. ..+...+++.+...+.|+++.||..|+.++..+++..+
T Consensus 500 l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 500 LLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 766432 45667777899999988876544 24556778888888889999999999999999998654
No 60
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.61 E-value=4.4e-12 Score=126.15 Aligned_cols=406 Identities=11% Similarity=0.079 Sum_probs=258.3
Q ss_pred chhHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHhcc-CCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHh
Q 015150 2 PMVRRSAATNLGKFAATVEAA-------HLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN 73 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~-------~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~ 73 (412)
+.||.-++..|...++.++.+ .+.+.+++.+..... ++...+|...+.++..++.+.-++ .++..++-+.+
T Consensus 57 ~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~ 135 (980)
T 3ibv_A 57 PSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQG 135 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHH
Confidence 578888888888888755433 345566666655321 234568888888999888875444 45666666666
Q ss_pred hccCCCh-HHHHHHHHHHHHHHHHhCCCCc---------------------ccchHHHHHHhc----CCChHHHHHHHHH
Q 015150 74 FSQDKSW-RVRYMVANQLYELCEAVGPEPT---------------------RSDVVPAYVRLL----RDNEAEVRIAAAG 127 (412)
Q Consensus 74 l~~d~~~-~vR~~~~~~l~~l~~~~~~~~~---------------------~~~l~~~l~~~l----~d~~~~vr~~a~~ 127 (412)
+++.++. ..-...++.|..+.+.+.+... .+.+.+.+...+ ...++.++..+++
T Consensus 136 ~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~ 215 (980)
T 3ibv_A 136 VIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQ 215 (980)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 6554333 3444556666666565433210 011233333333 3356789999999
Q ss_pred HHHHHHHhhCHHHHH-HhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHH------HHHHhhc-ccChHH
Q 015150 128 KVTKICRILNPELAI-QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP------IFLSLLK-DEFPDV 199 (412)
Q Consensus 128 ~l~~l~~~~~~~~~~-~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~------~l~~~l~-d~~~~v 199 (412)
++..+...++...+. ..+++.+.+++.+ +.+|.++++++..+...-.+......++. .+..+.. +++.++
T Consensus 216 ~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~ 293 (980)
T 3ibv_A 216 VYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNF 293 (980)
T ss_dssp HHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHH
T ss_pred HHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHH
Confidence 999998887776443 4578888888876 78999999999998765433222222222 2222222 456677
Q ss_pred HHHHHHHHHHHHHhh-----ch-----h------hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh---Ch-----
Q 015150 200 RLNIISKLDQVNQVI-----GI-----D------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GV----- 255 (412)
Q Consensus 200 r~~~~~~l~~i~~~~-----~~-----~------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~~----- 255 (412)
.....+.+..++..+ .+ + .....+++.+..+..++++.+-..+...+..+.... +.
T Consensus 294 ~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~ 373 (980)
T 3ibv_A 294 DEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELS 373 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcccccccc
Confidence 665555544433221 11 0 223567888899999988888777766666655432 11
Q ss_pred h---hHHHHHHHHHHHHhc-------Cc---------hhHHHHHHHHHHHHHHHHhChhhhhh----hhHHHHHhhhc--
Q 015150 256 G---FFDDKLGALCMQWLK-------DK---------VYSIRDAAANNVKRLAEEFGPDWAMQ----HIVPQVLEMIN-- 310 (412)
Q Consensus 256 ~---~~~~~l~~~l~~~l~-------d~---------~~~vr~~a~~~l~~l~~~~~~~~~~~----~~l~~l~~~~~-- 310 (412)
+ .+...+++.+..-+. |. -.+.|.... .+-..+..++++...+ .+.+.+.+.+.
T Consensus 374 ~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~ 452 (980)
T 3ibv_A 374 ASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLS 452 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Confidence 1 123334444444332 11 123666666 7777777788776665 55555655552
Q ss_pred -CCchHHHHHHHHHHHHhccccchh--------HHHHhhHHHHHhhcC-----CCCchHHHHHHHHHHHHhhhhchH-HH
Q 015150 311 -NPHYLYRMTILQAISLLAPVMGSE--------ITCSQLLPVVINASK-----DRVPNIKFNVAKVLQSLIPIVDQS-VV 375 (412)
Q Consensus 311 -~~~~~~r~~~~~~l~~l~~~~~~~--------~~~~~il~~l~~~l~-----d~~~~vR~~~~~~l~~l~~~~~~~-~~ 375 (412)
+.+|+.+++++.+++.+++.+... ...+.+++.+..+++ +++|.||..++.+++..+..+... .+
T Consensus 453 ~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~ 532 (980)
T 3ibv_A 453 PENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAA 532 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTT
T ss_pred CCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchh
Confidence 456999999999999999887642 234457777777755 889999999999999999887642 23
Q ss_pred HhhHHHHHHh--hcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150 376 EKSIRPCLVE--LSEDPDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 376 ~~~i~~~l~~--l~~d~~~~vr~~a~~al~~~~~~~~~ 411 (412)
.+.+++.+.. .+.+++..||.+|+.++..+++..+.
T Consensus 533 l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 533 IPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 3455555555 56689999999999999999987653
No 61
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.61 E-value=4.4e-14 Score=119.40 Aligned_cols=229 Identities=15% Similarity=0.141 Sum_probs=146.6
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHh
Q 015150 104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 183 (412)
Q Consensus 104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 183 (412)
..-++.+.+.++++++++|..|+.+|..+... .++.. .. .....
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~-~~----------------------------------~~~~g 54 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQI-QA----------------------------------VIDAG 54 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHH-HH----------------------------------HHHTT
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchH-HH----------------------------------HHHcC
Confidence 34566777777777777777777777655443 11111 10 01123
Q ss_pred hHHHHHHhhcccChHHHHHHHHHHHHHHHhhc---hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh---h
Q 015150 184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---F 257 (412)
Q Consensus 184 l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~---~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~ 257 (412)
.+|.+.++++++++++|..++.+|..++.... ........+|.+..+++++++.+|..++.++..++...... .
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHH
Confidence 45555555655556666666666655553211 11112335666667777777777777777766665432211 1
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh
Q 015150 258 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE 334 (412)
Q Consensus 258 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 334 (412)
.....+|.+.+++.++++.+|..|+.+|+.+...... ......++|.+.+++.+++..+|..++.+++.++......
T Consensus 135 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 214 (252)
T 4db8_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 214 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 2234678888888888888999998888888752211 1123567889999999999999999999999997432221
Q ss_pred ---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150 335 ---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 335 ---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~ 368 (412)
......+|.+.+++.++++.+|..++.+|+.++.
T Consensus 215 ~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 2344588999999999999999999999988763
No 62
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.60 E-value=3e-12 Score=129.21 Aligned_cols=401 Identities=11% Similarity=0.097 Sum_probs=256.6
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccC-----CchHHHHHHHHhHHHHhhccCc---------------h
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD-----DQDSVRLLAVEGCGALGKLLEP---------------Q 61 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~-----~~~~~r~~a~~~l~~i~~~~~~---------------~ 61 (412)
+.||.+.+.++..+++...++. |+.+++.+..++++ +++..+..++..+..+.+.... .
T Consensus 117 ~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~ 195 (963)
T 2x19_B 117 KIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLA 195 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSG
T ss_pred HHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHH
Confidence 5689999999999998754444 77888888777765 3555778888888887753211 1
Q ss_pred hhhhhhHHHHHhhccCCC--hHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH
Q 015150 62 DCVAHILPVIVNFSQDKS--WRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 138 (412)
Q Consensus 62 ~~~~~l~~~l~~l~~d~~--~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 138 (412)
...+.+++++.+.+++.+ ..++..+++++..... .+... ....+++.+.+.+. ++.+|..|++++..+......
T Consensus 196 ~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~ 272 (963)
T 2x19_B 196 VECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDA 272 (963)
T ss_dssp GGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTG
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHccccc
Confidence 223456777777665532 2488888998877765 33322 22568888888886 467999999999998764321
Q ss_pred ---HHHHHhhhhhHHH-------hccCCcHHHHHHHHHHHHhcCcccCh--------hHHHHhhHHHHHHhhcc-----c
Q 015150 139 ---ELAIQHILPCVKE-------LSSDSSQHVRSALATVIMGMAPILGK--------DATIEQLLPIFLSLLKD-----E 195 (412)
Q Consensus 139 ---~~~~~~~~~~l~~-------~~~d~~~~vr~~~~~~l~~l~~~~~~--------~~~~~~l~~~l~~~l~d-----~ 195 (412)
......+++.+.. ...+.+.......++.+..++..... ......++..+.....+ .
T Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 352 (963)
T 2x19_B 273 QRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPV 352 (963)
T ss_dssp GGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTT
T ss_pred ccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 1222333333332 22333445555666766665532111 11123445555555553 3
Q ss_pred ChHHHHHHHHHHHHHHHhhc----------hh---hHHhhHHHHHHHHhcCC--------------Cc-hHHHHHHHHhh
Q 015150 196 FPDVRLNIISKLDQVNQVIG----------ID---LLSQSLLPAIVELAEDR--------------HW-RVRLAIIEYIP 247 (412)
Q Consensus 196 ~~~vr~~~~~~l~~i~~~~~----------~~---~~~~~~~~~l~~~~~d~--------------~~-~vr~~~~~~l~ 247 (412)
++.+...++..+..+++... .. .....+++.+...+.-+ ++ ..|..+...+.
T Consensus 353 ~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~ 432 (963)
T 2x19_B 353 NETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLM 432 (963)
T ss_dssp TCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHH
Confidence 55666666666666655220 00 11123333333322111 11 23677777888
Q ss_pred HHHhhhChhhHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHHHHhChh--hhhhhhHHHHHhhhcCCchHHHHHHH
Q 015150 248 LLASQLGVGFFDDKLGALCMQWL----KDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTIL 321 (412)
Q Consensus 248 ~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~~r~~~~ 321 (412)
.++...|.. ..+.+.+.+...+ .+.+|..+++++.+++.+.+.+..+ .+...+++.+..+ .+++..+|.+++
T Consensus 433 ~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~~~~~vr~~~~ 510 (963)
T 2x19_B 433 YVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SISNVQLADTVM 510 (963)
T ss_dssp HHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CCCSHHHHHHHH
T ss_pred HHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CCCcHHHHHHHH
Confidence 888777743 4455667776777 6788999999999999998876532 2233455544333 335778999999
Q ss_pred HHHHHhccccchh-HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcCC--CCccHHH
Q 015150 322 QAISLLAPVMGSE-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED--PDVDVRF 396 (412)
Q Consensus 322 ~~l~~l~~~~~~~-~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d--~~~~vr~ 396 (412)
.+++++++.++.. .+.+.+++.++..+.+ +.|+..|+.++..++...+.. .+.+.++..+..++.. .+.+.|.
T Consensus 511 ~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~ 588 (963)
T 2x19_B 511 FTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCM 588 (963)
T ss_dssp HHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHH
Confidence 9999999876643 5788899999999976 899999999999998765543 3445666666665543 4568999
Q ss_pred HHHHHHHHhHHhhh
Q 015150 397 FATQALQSKDQVMM 410 (412)
Q Consensus 397 ~a~~al~~~~~~~~ 410 (412)
.+.++++.++..++
T Consensus 589 ~~~eai~~i~~~~~ 602 (963)
T 2x19_B 589 WLMQALGFLLSALQ 602 (963)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999887654
No 63
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.58 E-value=4.7e-12 Score=128.41 Aligned_cols=404 Identities=7% Similarity=0.002 Sum_probs=258.0
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccC---ch------------hh---
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE---PQ------------DC--- 63 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~---~~------------~~--- 63 (412)
+.||.+++.++..+++...+ .-|+.+++.+...++ .++..+..++.++..+.+... .+ ..
T Consensus 114 ~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~ 191 (1049)
T 3m1i_C 114 KNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE 191 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHH
Confidence 56788999999999887444 347788888877776 445567777777777765432 11 01
Q ss_pred hhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHH-hcCCChHHHHHHHHHHHHHHHHhh-CHH
Q 015150 64 VAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVR-LLRDNEAEVRIAAAGKVTKICRIL-NPE 139 (412)
Q Consensus 64 ~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~-~~~ 139 (412)
.+.++..+.+.+++ ++..++..+++++..+....+... ....+++.+.+ ++. ++.+|..|++++..+...- ++.
T Consensus 192 ~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~~ 269 (1049)
T 3m1i_C 192 FEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQD 269 (1049)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCcc
Confidence 22244555555443 467899999999988765443221 22456776663 343 5889999999999887652 221
Q ss_pred -----HHH----HhhhhhHHH--------------hccCCcHHHHHHHHHHHHhcCccc------C--hhHHHHhhHHHH
Q 015150 140 -----LAI----QHILPCVKE--------------LSSDSSQHVRSALATVIMGMAPIL------G--KDATIEQLLPIF 188 (412)
Q Consensus 140 -----~~~----~~~~~~l~~--------------~~~d~~~~vr~~~~~~l~~l~~~~------~--~~~~~~~l~~~l 188 (412)
... ..++..+.. ...|.++.+....++.+..++... + .......+++.+
T Consensus 270 ~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 349 (1049)
T 3m1i_C 270 NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL 349 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Confidence 111 112221111 123456666666666665544321 0 011234566777
Q ss_pred HHhhcccChHHHHHHHHHHHHHHHhh----c-hh---hHHhhHHHHHHHHh---cCCC-------------------chH
Q 015150 189 LSLLKDEFPDVRLNIISKLDQVNQVI----G-ID---LLSQSLLPAIVELA---EDRH-------------------WRV 238 (412)
Q Consensus 189 ~~~l~d~~~~vr~~~~~~l~~i~~~~----~-~~---~~~~~~~~~l~~~~---~d~~-------------------~~v 238 (412)
......++.+++..++..+..+.+.+ . .. .....+++.+...+ +|.. |..
T Consensus 350 l~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~ 429 (1049)
T 3m1i_C 350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1049)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHH
Confidence 77767778899999988888887632 1 11 12233444444332 1111 244
Q ss_pred HHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHHhChh---hhhhhhHHHHHhhhc---
Q 015150 239 RLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMIN--- 310 (412)
Q Consensus 239 r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~--- 310 (412)
|..+...+..++... .....+.+.+.+.+.+. ..+|..|++++.+++.+.+.++.. .+...+++.+..+..
T Consensus 430 ~~~~~~~L~~l~~~~-~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~ 508 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLN-VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKR 508 (1049)
T ss_dssp HHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhc
Confidence 666777777777544 34455666777777665 467899999999999887665543 223455555555332
Q ss_pred --CCchHHHHHHHHHHHHhccccchh-HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH----------HHHh
Q 015150 311 --NPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----------VVEK 377 (412)
Q Consensus 311 --~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----------~~~~ 377 (412)
++++.+|..++++++++++.+... .+...+++.++..+.|+++.||..|+.++..++...+.. .+.+
T Consensus 509 ~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~ 588 (1049)
T 3m1i_C 509 GKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ 588 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHH
Confidence 345667778999999998766543 467788999999999999999999999999998876543 2345
Q ss_pred hHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150 378 SIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 378 ~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 410 (412)
.++..+..+..+.+.+-+....++++.++...|
T Consensus 589 ~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 589 TIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 566666666777777777888899998887665
No 64
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.57 E-value=6.7e-16 Score=126.89 Aligned_cols=186 Identities=21% Similarity=0.243 Sum_probs=107.5
Q ss_pred HHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHH
Q 015150 33 EELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR 112 (412)
Q Consensus 33 ~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ 112 (412)
..+++|+++.+|..++..+ +. ..+..+.+|+++.||..++..++ . +.+..
T Consensus 56 ~~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L~------------~---~~L~~ 105 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRLP------------R---EQLSA 105 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTSC------------S---GGGGG
T ss_pred HHHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHCC------------H---HHHHH
Confidence 3456777777777666543 11 12556677777777777775421 0 34556
Q ss_pred hcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhh
Q 015150 113 LLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 192 (412)
Q Consensus 113 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 192 (412)
+++|+++.||..+...+ + .+.+..+++|+++.||..++..+ +. +.+..++
T Consensus 106 ll~D~d~~VR~~aA~~l-------~--------~~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~ 155 (244)
T 1lrv_A 106 LMFDEDREVRITVADRL-------P--------LEQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM 155 (244)
T ss_dssp TTTCSCHHHHHHHHHHS-------C--------TGGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred HHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence 67777777777766642 1 13345556777777777776531 11 2334566
Q ss_pred cccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC
Q 015150 193 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD 272 (412)
Q Consensus 193 ~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 272 (412)
+|+++.||..++..+ +. +.+..+++|++|.||.+++..+ +. +.+..++.|
T Consensus 156 ~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D 205 (244)
T 1lrv_A 156 RDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHD 205 (244)
T ss_dssp TCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGC
T ss_pred cCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcC
Confidence 677777777766641 11 2233456777777777766553 11 234555677
Q ss_pred chhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHH
Q 015150 273 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAI 324 (412)
Q Consensus 273 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l 324 (412)
++|.||.+++.+++ .+.+..+ +|++|.||.++.+.+
T Consensus 206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 77777777766643 1344444 666777777666544
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.57 E-value=1.2e-12 Score=127.23 Aligned_cols=262 Identities=15% Similarity=0.195 Sum_probs=211.1
Q ss_pred hhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh----hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH
Q 015150 144 HILPCVKELSSDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 219 (412)
Q Consensus 144 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~ 219 (412)
.++..+.+.+.+.... ..++..+..++...+. +.+.-.++|.+.....|....||.+|..+...+...+.++..
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~ 131 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI 131 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 4667777777776544 7788888888866633 344445778888999999999999999999999999998877
Q ss_pred HhhHHHHHHHHhcCC-CchHHHHHHHHhhHHHhhhChh--hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh
Q 015150 220 SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 296 (412)
Q Consensus 220 ~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 296 (412)
..++|.+...+.+. .|+.+.+++..+..+++..... ...+.++|.+...+.|..++|..+|..++..++..+++..
T Consensus 132 -~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d 210 (986)
T 2iw3_A 132 -KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD 210 (986)
T ss_dssp -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred -HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc
Confidence 88899999888765 6999999999999999876332 2357799999999999999999999999999999888765
Q ss_pred hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch-hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--
Q 015150 297 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-- 373 (412)
Q Consensus 297 ~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-- 373 (412)
+ ...+|.+.+.+.+|+. + ..+++.|+...-.-.. .+...-+.|.|...|+++...+++.++-.+.++++-+.+.
T Consensus 211 ~-~~~~~~~~~~~~~p~~-~-~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~ 287 (986)
T 2iw3_A 211 I-ERFIPSLIQCIADPTE-V-PETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV 287 (986)
T ss_dssp T-GGGHHHHHHHHHCTTH-H-HHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred h-hhhHHHHHHHhcChhh-h-HHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH
Confidence 4 5588999999999864 2 2335555543321111 2457789999999999999999999999999999888764
Q ss_pred --HHHhhHHHHHHh-hcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150 374 --VVEKSIRPCLVE-LSEDPDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 374 --~~~~~i~~~l~~-l~~d~~~~vr~~a~~al~~~~~~~~~ 411 (412)
.|.+.++|.+++ .-+-.++++|..+.+|+.++....+.
T Consensus 288 ~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 288 IAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 577889999998 45668999999999999999887654
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.56 E-value=1e-11 Score=119.22 Aligned_cols=331 Identities=14% Similarity=0.065 Sum_probs=222.2
Q ss_pred hHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhcc---CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC
Q 015150 41 DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ---DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN 117 (412)
Q Consensus 41 ~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~---d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 117 (412)
+..+..|+..+|.+...... ..+..+.+++. ..++.+|..++.+||-+....+. +.+..+...+.+.
T Consensus 372 ~~~k~sA~aSLGlIh~g~~~-----~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-----~~~~lL~~~L~~~ 441 (963)
T 4ady_A 372 NWAKFTATASLGVIHKGNLL-----EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-----DTTDYLKNIIVEN 441 (963)
T ss_dssp THHHHHHHHHHHHHTSSCTT-----THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCchH-----HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHcCc
Confidence 34577888888888776433 24555666654 56789999999999998765442 3566666666544
Q ss_pred h--------HHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHH
Q 015150 118 E--------AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFL 189 (412)
Q Consensus 118 ~--------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 189 (412)
+ +.+|..|+..||.+.-..+.+. +++.+...+.|.+..+|..++.++|.+.---|.+...+.++..+
T Consensus 442 ~~~~~~~~~~~ir~gAaLGLGla~~GS~~ee----v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~- 516 (963)
T 4ady_A 442 SGTSGDEDVDVLLHGASLGIGLAAMGSANIE----VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS- 516 (963)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHHHSTTCCCHH----HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-
T ss_pred cccccccccHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH-
Confidence 3 7899999999988644334443 44556666666677788888888887633233333344444433
Q ss_pred HhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHH
Q 015150 190 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 269 (412)
Q Consensus 190 ~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~ 269 (412)
..+.+..+|..++-+|+.+. +|...-.+.+ +..+..+.+|-+|..++.+++.-.-..|.....+. ++..+
T Consensus 517 --~e~~~e~vrR~aalgLGll~--~g~~e~~~~l---i~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~---LL~~~ 586 (963)
T 4ady_A 517 --QETQHGNITRGLAVGLALIN--YGRQELADDL---ITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKR---LLHVA 586 (963)
T ss_dssp --HHCSCHHHHHHHHHHHHHHT--TTCGGGGHHH---HHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHH---HHHHH
T ss_pred --hccCcHHHHHHHHHHHHhhh--CCChHHHHHH---HHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHH---HHHHh
Confidence 34567789988888888773 3332221222 23344578999999988887765555565433333 33444
Q ss_pred hcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHh-hhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhc
Q 015150 270 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE-MINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS 348 (412)
Q Consensus 270 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~-~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l 348 (412)
..|.+..||++|+.+|+.+.- |.+ ...+.+.. +..+.++.+|..+..++|.++...+. ..++..|..+.
T Consensus 587 ~~d~~d~VRraAViaLGlI~~--g~~----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~ 656 (963)
T 4ady_A 587 VSDSNDDVRRAAVIALGFVLL--RDY----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLT 656 (963)
T ss_dssp HHCSCHHHHHHHHHHHHHHTS--SSC----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHhhcc--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHc
Confidence 568889999999999997652 322 23444544 44577899999999999999865553 45677778888
Q ss_pred CCCCchHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcCC--CCccHHHHHHHHHHHhH
Q 015150 349 KDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED--PDVDVRFFATQALQSKD 406 (412)
Q Consensus 349 ~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d--~~~~vr~~a~~al~~~~ 406 (412)
+|++..||..|+.+|+.+...-.+. .....++..+.....| .|..+|..+.-|.|.+.
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 9999999999999999997543332 1223445555554444 66778999988888764
No 67
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.55 E-value=2.6e-12 Score=116.25 Aligned_cols=246 Identities=12% Similarity=0.004 Sum_probs=175.8
Q ss_pred HHHHHHHhcCcccC--hhHHHHhhHHHHHHhhc-----------ccChHHHHHHHHHHHHHHHhhch--hhH--HhhHHH
Q 015150 163 ALATVIMGMAPILG--KDATIEQLLPIFLSLLK-----------DEFPDVRLNIISKLDQVNQVIGI--DLL--SQSLLP 225 (412)
Q Consensus 163 ~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~-----------d~~~~vr~~~~~~l~~i~~~~~~--~~~--~~~~~~ 225 (412)
.+++++++++..-. ........++.+..++. +.++.++..++.+|..++..-.. ..+ ....+|
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 246 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence 78888888864311 11112356677777763 13467899999999998854321 122 245689
Q ss_pred HHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hh-HHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHh-C--hhhh
Q 015150 226 AIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF-FDDKLGALCMQW-LKDKVYSIRDAAANNVKRLAEEF-G--PDWA 297 (412)
Q Consensus 226 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~-~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~-~--~~~~ 297 (412)
.+..++.+++..++..++.+|..++..-+. .. .....+|.++.+ +...+..+++.|+.++..+.... + ....
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999999999999999999888753111 11 223467888886 56677889999999998887622 1 1222
Q ss_pred -hhhhHHHHHhhhcCCch----HHHHHHHHHHHHhccc--cchh----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150 298 -MQHIVPQVLEMINNPHY----LYRMTILQAISLLAPV--MGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 366 (412)
Q Consensus 298 -~~~~l~~l~~~~~~~~~----~~r~~~~~~l~~l~~~--~~~~----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 366 (412)
....+|.|.+++.+.+. .++..++.++..++.. .+.+ ......+|.++.++.+.+..++..++.+|..+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34688999998886543 4888888999888742 1222 12345789999999999999999999999999
Q ss_pred hhhhch---HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150 367 IPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 367 ~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 408 (412)
+..-.. .......+|.|..++..++.++|..|+.||..+...
T Consensus 407 a~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 407 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 742111 134467899999999999999999999999998753
No 68
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.55 E-value=5.2e-12 Score=114.23 Aligned_cols=337 Identities=12% Similarity=0.064 Sum_probs=219.8
Q ss_pred HHHHHhccCCchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhccCC------------ChHHHHHHHHHHHHHHH
Q 015150 30 SIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDK------------SWRVRYMVANQLYELCE 95 (412)
Q Consensus 30 ~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~d~------------~~~vR~~~~~~l~~l~~ 95 (412)
+-+..++.+.++. ...+.|..+....+. .....-.+|.+.++++.. ++.+|..++.+|.+|+.
T Consensus 35 ~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~ 111 (458)
T 3nmz_A 35 YSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIH 111 (458)
T ss_dssp ----------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHc
Confidence 4444445444433 134455555554332 124556888888888753 26999999999999998
Q ss_pred HhCCCCcc---cchH----------HHHHHhcCCCh--HH-----HHH-------HHHHHHHHHHHhhC--HHHHHHhhh
Q 015150 96 AVGPEPTR---SDVV----------PAYVRLLRDNE--AE-----VRI-------AAAGKVTKICRILN--PELAIQHIL 146 (412)
Q Consensus 96 ~~~~~~~~---~~l~----------~~l~~~l~d~~--~~-----vr~-------~a~~~l~~l~~~~~--~~~~~~~~~ 146 (412)
.-++.... .-++ +.+.+++..+. .+ ||. .|+.+|++++..-. ........+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l 191 (458)
T 3nmz_A 112 SQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGL 191 (458)
T ss_dssp HSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHH
T ss_pred cCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCH
Confidence 65443311 1122 33444444321 11 555 78888888754311 112234467
Q ss_pred hhHHHhcc-----------CCcHHHHHHHHHHHHhcCcccC--hhHH--HHhhHHHHHHhhcccChHHHHHHHHHHHHHH
Q 015150 147 PCVKELSS-----------DSSQHVRSALATVIMGMAPILG--KDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 211 (412)
Q Consensus 147 ~~l~~~~~-----------d~~~~vr~~~~~~l~~l~~~~~--~~~~--~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~ 211 (412)
+.+..++. +.++.++..+++++..++..-. +..+ ....+|.+..++..++++++..++.+|..+.
T Consensus 192 ~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs 271 (458)
T 3nmz_A 192 QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS 271 (458)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 77777662 1357889999999999885322 1122 2456899999999999999999999999886
Q ss_pred Hhhch---hh-HHhhHHHHHHHH-hcCCCchHHHHHHHHhhHHHhhh-C-h-hhH-HHHHHHHHHHHhcCchh----HHH
Q 015150 212 QVIGI---DL-LSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQL-G-V-GFF-DDKLGALCMQWLKDKVY----SIR 278 (412)
Q Consensus 212 ~~~~~---~~-~~~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~-~-~-~~~-~~~l~~~l~~~l~d~~~----~vr 278 (412)
..-+. .. .....+|.+.++ ..+.++.++..++.++..++... + . ... ....+|.+..+|.+... .++
T Consensus 272 ~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~ 351 (458)
T 3nmz_A 272 WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII 351 (458)
T ss_dssp SSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHH
T ss_pred cCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHH
Confidence 42111 22 223568888886 56678899999988888888732 1 1 111 23478889999886554 489
Q ss_pred HHHHHHHHHHHHHh--Chh----hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcC
Q 015150 279 DAAANNVKRLAEEF--GPD----WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASK 349 (412)
Q Consensus 279 ~~a~~~l~~l~~~~--~~~----~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~ 349 (412)
+.|+.+|..+...+ +.+ ......+|.+..++.+.+..++..++.++..++...... ......+|.+.+++.
T Consensus 352 ~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~ 431 (458)
T 3nmz_A 352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH 431 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTT
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh
Confidence 99999998887531 222 112457899999999999999999999999998432221 234568999999999
Q ss_pred CCCchHHHHHHHHHHHHhhh
Q 015150 350 DRVPNIKFNVAKVLQSLIPI 369 (412)
Q Consensus 350 d~~~~vR~~~~~~l~~l~~~ 369 (412)
++++.+|..++.+|..+...
T Consensus 432 s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 432 SKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp CSSHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999864
No 69
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.55 E-value=1.8e-15 Score=124.29 Aligned_cols=188 Identities=19% Similarity=0.260 Sum_probs=118.5
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHH
Q 015150 71 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVK 150 (412)
Q Consensus 71 l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 150 (412)
+..++.|+++.||..++..+. ...+..+++|+++.||..+...+. .+.+.
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l~---------------~~~l~~L~~D~~~~VR~~aA~~L~---------------~~~L~ 104 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYSP---------------VEALTPLIRDSDEVVRRAVAYRLP---------------REQLS 104 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTSC---------------GGGGGGGTTCSSHHHHHHHHTTSC---------------SGGGG
T ss_pred HHHHhcCCCHHHHHHHHHhCC---------------HHHHHHHccCcCHHHHHHHHHHCC---------------HHHHH
Confidence 345668888888888877531 123566778888888888876531 14566
Q ss_pred HhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHH
Q 015150 151 ELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 230 (412)
Q Consensus 151 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~ 230 (412)
.+++|+++.||.+++..+ . . +.+..+++|+++.||..++..+ +. +.+..+
T Consensus 105 ~ll~D~d~~VR~~aA~~l---~----~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l 154 (244)
T 1lrv_A 105 ALMFDEDREVRITVADRL---P----L--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRF 154 (244)
T ss_dssp GTTTCSCHHHHHHHHHHS---C----T--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGT
T ss_pred HHHcCCCHHHHHHHHHhC---C----H--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHH
Confidence 677888888888877742 1 1 2345567788888888777632 11 123356
Q ss_pred hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhc
Q 015150 231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN 310 (412)
Q Consensus 231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~ 310 (412)
.+|++|.||..++..+ +. +.+..+++|+++.||.+++..+ + .+.+..++.
T Consensus 155 ~~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~--------~~~L~~Ll~ 204 (244)
T 1lrv_A 155 MRDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------R--------GDDLLELLH 204 (244)
T ss_dssp TTCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------C--------GGGGGGGGG
T ss_pred HcCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------C--------HHHHHHHHc
Confidence 6778888887777652 11 2334567777777887777652 1 134556677
Q ss_pred CCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHH
Q 015150 311 NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364 (412)
Q Consensus 311 ~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~ 364 (412)
|++|+||.+++..++ .+.+..+ +|+++.||..+...|+
T Consensus 205 D~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 205 DPDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp CSSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CCCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 777777777777643 1334444 7777777777765543
No 70
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.51 E-value=1.1e-12 Score=107.40 Aligned_cols=187 Identities=16% Similarity=0.107 Sum_probs=140.0
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---h
Q 015150 221 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---P 294 (412)
Q Consensus 221 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~ 294 (412)
....|.+..++.++++.+|..++..+..++..... .......+|.+.++|+++++.+|..|+.+|+.+..... .
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 44567777777888888888888887777643211 11223467888888999899999999999988863211 1
Q ss_pred hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc
Q 015150 295 DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 371 (412)
Q Consensus 295 ~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 371 (412)
.......+|.+..++.+++..+|..++.+++.++...... ......+|.++++++++++.+|..++.+|+.++..-.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 1223457899999999999999999999999998643321 2345689999999999999999999999999986422
Q ss_pred hH---HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 372 QS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 372 ~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
.. ......++.|..++.+++.++|..|..++..++.
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 21 2345788999999999999999999999998764
No 71
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.51 E-value=3.4e-11 Score=119.81 Aligned_cols=405 Identities=11% Similarity=0.142 Sum_probs=249.6
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCch-HHHHHHHHhHHHHhhccCc-----h------------hh
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD-SVRLLAVEGCGALGKLLEP-----Q------------DC 63 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~~r~~a~~~l~~i~~~~~~-----~------------~~ 63 (412)
+.+|.+.+.++..++....++ .|+.+++-+..+++..+. ..-...++.+..+.+.+.+ + ..
T Consensus 104 ~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m 182 (980)
T 3ibv_A 104 AYISNAVQHLLTLLFLQLYPS-NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAI 182 (980)
T ss_dssp THHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHH
Confidence 568999999999999875443 366666666666654333 2333445555544443211 0 00
Q ss_pred ----hhhhHHH----HHhhccCCChHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 015150 64 ----VAHILPV----IVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 134 (412)
Q Consensus 64 ----~~~l~~~----l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 134 (412)
.+.+.+. +.++.+..++.++..++++++......+... ....+++.+.+++.+ +.+|..|+++|..+..
T Consensus 183 ~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~ 260 (980)
T 3ibv_A 183 RANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVN 260 (980)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHH
Confidence 0112333 3333333677889999999998887444222 225688899999987 7899999999998876
Q ss_pred hhCHHHHHHhhh------hhHHHhcc-CCcHHHHHHHHHHHHhcCcc------cC----hh------HHHHhhHHHHHHh
Q 015150 135 ILNPELAIQHIL------PCVKELSS-DSSQHVRSALATVIMGMAPI------LG----KD------ATIEQLLPIFLSL 191 (412)
Q Consensus 135 ~~~~~~~~~~~~------~~l~~~~~-d~~~~vr~~~~~~l~~l~~~------~~----~~------~~~~~l~~~l~~~ 191 (412)
.-........++ +.+..+.. +.+.+++...++.+..++.. .+ .+ .....++|.+..+
T Consensus 261 k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~ 340 (980)
T 3ibv_A 261 KKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRY 340 (980)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHH
T ss_pred cCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHH
Confidence 543221111122 22222222 45666665555544433221 11 00 2235688899999
Q ss_pred hcccChHHHHHHHHHHHHHHHhhch--------h---hHHhhHHHHHHHHh---cCCCc-------------hHHHHHHH
Q 015150 192 LKDEFPDVRLNIISKLDQVNQVIGI--------D---LLSQSLLPAIVELA---EDRHW-------------RVRLAIIE 244 (412)
Q Consensus 192 l~d~~~~vr~~~~~~l~~i~~~~~~--------~---~~~~~~~~~l~~~~---~d~~~-------------~vr~~~~~ 244 (412)
..+++.+|-..+...+..+...... + .+...+++.+.+-+ +|.+| ..|....
T Consensus 341 ~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~- 419 (980)
T 3ibv_A 341 LSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK- 419 (980)
T ss_dssp HTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-
T ss_pred hCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-
Confidence 9888888887777777666544321 1 11222333333221 11111 3565555
Q ss_pred HhhHHHhhhChhhHHH----HHHHHHHHHhc---CchhHHHHHHHHHHHHHHHHhChh--------hhhhhhHHHHHhhh
Q 015150 245 YIPLLASQLGVGFFDD----KLGALCMQWLK---DKVYSIRDAAANNVKRLAEEFGPD--------WAMQHIVPQVLEMI 309 (412)
Q Consensus 245 ~l~~l~~~~~~~~~~~----~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~~l~~l~~~~ 309 (412)
.+......+|++.+.+ .+.+.+.+.+. +.+|..+++++.+++.+.+.+... .....+++.+..++
T Consensus 420 ~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll 499 (980)
T 3ibv_A 420 IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVT 499 (980)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHH
Confidence 5566666777777666 66666666663 567999999999999988876431 11234666666665
Q ss_pred c-----CCchHHHHHHHHHHHHhccccchh-HHHHhhHHHHHh--hcCCCCchHHHHHHHHHHHHhhhhchH--HHHhhH
Q 015150 310 N-----NPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVIN--ASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSI 379 (412)
Q Consensus 310 ~-----~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~--~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i 379 (412)
. ++++.+|.++++.+++.++.+... .+.+.+++.++. ++.++++.||..++.++..+++..... .+.+.+
T Consensus 500 ~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~i 579 (980)
T 3ibv_A 500 TSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESS 579 (980)
T ss_dssp HSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHH
Confidence 4 778999999999999999988653 467778888888 888899999999999999998776543 233445
Q ss_pred HHHHHhhcCC---C----C--------------ccHHHHHHHHHHHhHHhhh
Q 015150 380 RPCLVELSED---P----D--------------VDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 380 ~~~l~~l~~d---~----~--------------~~vr~~a~~al~~~~~~~~ 410 (412)
+..+..++.- | | .+=+....+|+|.++..++
T Consensus 580 l~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~ 631 (980)
T 3ibv_A 580 LAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN 631 (980)
T ss_dssp HHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence 5555443321 1 1 1246778888888887654
No 72
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.50 E-value=4e-10 Score=112.35 Aligned_cols=404 Identities=12% Similarity=0.064 Sum_probs=251.5
Q ss_pred chhHHHHHHHHHHHHHH----hhh---hhhHHHHHHHHHHhccCC-----chHHHHHHHHhHHHHhhccCchhhhhhhHH
Q 015150 2 PMVRRSAATNLGKFAAT----VEA---AHLKSEIMSIFEELTQDD-----QDSVRLLAVEGCGALGKLLEPQDCVAHILP 69 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~----~~~---~~~~~~l~~~l~~l~~~~-----~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~ 69 (412)
+.||..++..|...++. +++ ..+.+.+++.+.....++ ...+|...+.++..++.+.-++ .++.+++
T Consensus 63 ~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~-~Wp~~l~ 141 (1023)
T 4hat_C 63 PQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ-NWPEFIP 141 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT-TCTTHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh-hchHHHH
Confidence 67899999999988874 222 345667777776655443 3456666788888888775443 4677888
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHHHHhCC---CCc---------------ccchHHHHHHhcC-CChHHHHHHHHHHHH
Q 015150 70 VIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPT---------------RSDVVPAYVRLLR-DNEAEVRIAAAGKVT 130 (412)
Q Consensus 70 ~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~---------------~~~l~~~l~~~l~-d~~~~vr~~a~~~l~ 130 (412)
.+.++++. ++......+..|..+.+.... +.. .+.+++.+.+.++ ..++.+...+++++.
T Consensus 142 dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~ 220 (1023)
T 4hat_C 142 ELIGSSSS-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLL 220 (1023)
T ss_dssp HHHHHTTT-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 88888764 345567777777777766422 110 1234555555553 345678889999999
Q ss_pred HHHHhhCHHHH-HHhhhhhHH-HhccCCcHHHHHHHHHHHHhcCcc-c-Chh-HHHHhhH---HHHHHh-----------
Q 015150 131 KICRILNPELA-IQHILPCVK-ELSSDSSQHVRSALATVIMGMAPI-L-GKD-ATIEQLL---PIFLSL----------- 191 (412)
Q Consensus 131 ~l~~~~~~~~~-~~~~~~~l~-~~~~d~~~~vr~~~~~~l~~l~~~-~-~~~-~~~~~l~---~~l~~~----------- 191 (412)
.+...++...+ .+.+++.+. .++. ++..|..+++++..+... . ++. .+.+.+. +.+...
T Consensus 221 s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~ 298 (1023)
T 4hat_C 221 RYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTAD 298 (1023)
T ss_dssp HHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCC
T ss_pred HHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 99888776543 344777777 6664 567999999999998752 2 221 1221111 111110
Q ss_pred -------hcccChHHHHHHHHHHHHHHHhhch-----hh---HHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC--
Q 015150 192 -------LKDEFPDVRLNIISKLDQVNQVIGI-----DL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-- 254 (412)
Q Consensus 192 -------l~d~~~~vr~~~~~~l~~i~~~~~~-----~~---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-- 254 (412)
..+++.+........+..+++.... +. +....+..+..+...+++.+=..+...+..+.+.+-
T Consensus 299 l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e 378 (1023)
T 4hat_C 299 LKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE 378 (1023)
T ss_dssp HHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 1123445444444454444333211 11 112223355666667777776666777776665432
Q ss_pred ---hhh---HHHHHHHHHHHHhcCch---------------------hHHHHHHH-HHHHHHHHHhChhhhhhhhHHHHH
Q 015150 255 ---VGF---FDDKLGALCMQWLKDKV---------------------YSIRDAAA-NNVKRLAEEFGPDWAMQHIVPQVL 306 (412)
Q Consensus 255 ---~~~---~~~~l~~~l~~~l~d~~---------------------~~vr~~a~-~~l~~l~~~~~~~~~~~~~l~~l~ 306 (412)
... +...+.+.++..+.-+. ........ .+|..+.. +..+...+.+++.+.
T Consensus 379 ~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~-l~~~~~~~~~~~~l~ 457 (1023)
T 4hat_C 379 PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH-LNVIDTEEIMISKLA 457 (1023)
T ss_dssp TTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHH
Confidence 112 23456666665543211 11111111 23333333 333334455666666
Q ss_pred hhhcC--CchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcC-----CCCchHHHHHHHHHHHHhhhhch-HHH
Q 015150 307 EMINN--PHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASK-----DRVPNIKFNVAKVLQSLIPIVDQ-SVV 375 (412)
Q Consensus 307 ~~~~~--~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~-----d~~~~vR~~~~~~l~~l~~~~~~-~~~ 375 (412)
+.+.+ .+|+.|++++.++|.+++.+..+ .+...++|.++.+.. |+...||.+++.++|.+...+.. ..+
T Consensus 458 ~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~ 537 (1023)
T 4hat_C 458 RQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF 537 (1023)
T ss_dssp HHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH
Confidence 65553 67999999999999999888754 577788998888876 45666888999999998877653 234
Q ss_pred HhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150 376 EKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 376 ~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 410 (412)
.+.++..+...+.|+.+.|...|+.|+..+++..+
T Consensus 538 L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~ 572 (1023)
T 4hat_C 538 LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1023)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 56677777777788889999999999999998654
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.49 E-value=1.2e-11 Score=118.77 Aligned_cols=273 Identities=13% Similarity=0.036 Sum_probs=183.2
Q ss_pred chHHHHHHhcC---CChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCC--------cHHHHHHHHHHHHhcCc
Q 015150 105 DVVPAYVRLLR---DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS--------SQHVRSALATVIMGMAP 173 (412)
Q Consensus 105 ~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~--------~~~vr~~~~~~l~~l~~ 173 (412)
+.+..+...+. +.++.+|..|+.++|-+....+.+ ++..+...+.+. .+.+|..++-.+|.+..
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~ 466 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM 466 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc
Confidence 34566666665 567889999999999887766543 234444444332 36789888888887653
Q ss_pred ccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh
Q 015150 174 ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 253 (412)
Q Consensus 174 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 253 (412)
--+.+ .+++.+...+.|++..+|..++-+++.+.-..+.+.....++..+ .++.+..+|+.++..|+.+. +
T Consensus 467 GS~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~---~e~~~e~vrR~aalgLGll~--~ 537 (963)
T 4ady_A 467 GSANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS---QETQHGNITRGLAVGLALIN--Y 537 (963)
T ss_dssp TCCCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHT--T
T ss_pred CCCCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH---hccCcHHHHHHHHHHHHhhh--C
Confidence 33333 455666666777777788788888887744334333333444433 34667788998888887663 3
Q ss_pred ChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch
Q 015150 254 GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS 333 (412)
Q Consensus 254 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 333 (412)
|.+...+.++.. +..+.++-+|..++.+++--.-..|.....+.++ .....|.+..+|.+++.+++.+.- |.
T Consensus 538 g~~e~~~~li~~---L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL---~~~~~d~~d~VRraAViaLGlI~~--g~ 609 (963)
T 4ady_A 538 GRQELADDLITK---MLASDESLLRYGGAFTIALAYAGTGNNSAVKRLL---HVAVSDSNDDVRRAAVIALGFVLL--RD 609 (963)
T ss_dssp TCGGGGHHHHHH---HHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHH---HHHHHCSCHHHHHHHHHHHHHHTS--SS
T ss_pred CChHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHH---HHhccCCcHHHHHHHHHHHHhhcc--CC
Confidence 443333333332 3447889999999888875554455443223233 333457778899999999998753 22
Q ss_pred hHHHHhhHHHHHh-hcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 334 EITCSQLLPVVIN-ASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 334 ~~~~~~il~~l~~-~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
. ...|.++. +.++.++.||..++.++|.+...-+. ..++..|..+++|+|..||+.|+.||+.+..
T Consensus 610 ~----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 610 Y----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp C----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 2 23444444 45678899999999999999754443 4678899999999999999999999998863
No 74
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.47 E-value=3.1e-10 Score=106.95 Aligned_cols=378 Identities=8% Similarity=0.034 Sum_probs=249.1
Q ss_pred HHHHHHhc-cCCchHHHHHHHHhHHHHhhccC-chhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC-CCcccc
Q 015150 29 MSIFEELT-QDDQDSVRLLAVEGCGALGKLLE-PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRSD 105 (412)
Q Consensus 29 ~~~l~~l~-~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~-~~~~~~ 105 (412)
.+.+.+.. +.++..+...+++.+...+..-. .+...+...+.+.+.+++ ..+|..++-.|.++....+. +....+
T Consensus 257 ~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~ 334 (778)
T 3opb_A 257 SKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQ 334 (778)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHH
Confidence 34444444 33444555566666655543210 233445566777777765 47788888888887764432 223356
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH-HHH--HHhhhhhHHHhccC-CcHHHHHHHHHHHHhcCcccC-----
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-ELA--IQHILPCVKELSSD-SSQHVRSALATVIMGMAPILG----- 176 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~--~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~----- 176 (412)
+.+.+.+++.+++...|..|++.|..+...-.- +.+ .+.++..+.+++++ .+..+...++..+.++.....
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e 414 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX 414 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchh
Confidence 888899988887666699999999887542111 111 12245666666653 455677777777777653211
Q ss_pred ---------------h------h------H---------HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc-h-hh
Q 015150 177 ---------------K------D------A---------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-I-DL 218 (412)
Q Consensus 177 ---------------~------~------~---------~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~-~-~~ 218 (412)
+ . . .....+|.+..+++.+++.+|..++++|..+...-. . ..
T Consensus 415 ~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~l 494 (778)
T 3opb_A 415 XXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQL 494 (778)
T ss_dssp CC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHH
T ss_pred hhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0 0 0 012578899999999999999999999999975532 1 22
Q ss_pred HHhhHHHHHHHHhcCCCch---HHHHHHHHhhHHHhhhChhhHH-----HHHHHHHHHHhcC-chh-------------H
Q 015150 219 LSQSLLPAIVELAEDRHWR---VRLAIIEYIPLLASQLGVGFFD-----DKLGALCMQWLKD-KVY-------------S 276 (412)
Q Consensus 219 ~~~~~~~~l~~~~~d~~~~---vr~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-~~~-------------~ 276 (412)
..+..++.+..++.+.... .|..++.++..+.....+.... ...+|.+..+|.. +.. -
T Consensus 495 vqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l 574 (778)
T 3opb_A 495 AQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLT 574 (778)
T ss_dssp HHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHH
T ss_pred HHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHH
Confidence 3456788899988776543 8999999998887544332211 1467778888872 221 1
Q ss_pred HHHHHHHHHHHHHHHhCh------h-hhh-hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch---hHHH---Hh---
Q 015150 277 IRDAAANNVKRLAEEFGP------D-WAM-QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITC---SQ--- 339 (412)
Q Consensus 277 vr~~a~~~l~~l~~~~~~------~-~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~---~~--- 339 (412)
-+..|+.+|..++..-++ . .+. ...+|.+.+++.+.+..+|.++++++..++..-.. +++. +.
T Consensus 575 ~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~ 654 (778)
T 3opb_A 575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLR 654 (778)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhc
Confidence 267888999888874321 1 223 25889999999999999999999999999853321 2221 11
Q ss_pred hHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch---HHHH-hhHHHHHHhhcCC--CCccHHHHHHHHHHHhHHh
Q 015150 340 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVE-KSIRPCLVELSED--PDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 340 il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~-~~i~~~l~~l~~d--~~~~vr~~a~~al~~~~~~ 408 (412)
=++.++.++...+..+|.+|+.+|..+...... ..+. ...++.+..++.+ ++.++|.++..++..+.+.
T Consensus 655 rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 655 NFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 277888999999999999999999998643322 2222 2466677777777 8999999999999999863
No 75
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.47 E-value=2.4e-10 Score=113.90 Aligned_cols=404 Identities=8% Similarity=0.020 Sum_probs=252.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhcc---Cchh---------------hh
Q 015150 3 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL---EPQD---------------CV 64 (412)
Q Consensus 3 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~---~~~~---------------~~ 64 (412)
.+|.+.+.++..+++..-++ -|+.+++.+..+++.. +..+...+..+..+.+.. +.+. ..
T Consensus 115 ~i~nKLa~~la~I~~~~~p~-~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~ 192 (1023)
T 4hat_C 115 NLINKSDLTLVQILKQEWPQ-NWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEF 192 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChh-hchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 46777888888888765443 3778888888877654 345666677776666542 1110 12
Q ss_pred hhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHHhCCCC-cccchHHHHH-HhcCCChHHHHHHHHHHHHHHHHh-h-CH-
Q 015150 65 AHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYV-RLLRDNEAEVRIAAAGKVTKICRI-L-NP- 138 (412)
Q Consensus 65 ~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~l~~~-~-~~- 138 (412)
+.++.++.+.++ ..++.+...++++++....-++-.. ....+++.+. .++.+ +..|..|+++|..+... . ++
T Consensus 193 ~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~--~~~r~~A~ecL~eIv~~~~~~~~ 270 (1023)
T 4hat_C 193 EQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTS--PDTRAITLKCLTEVSNLKIPQDN 270 (1023)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHS--HHHHHHHHHHHHHHHTSCCCSSC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCC--HHHHHHHHHHHHHHHccccCCch
Confidence 234555555543 3567788889999998877544332 2356888888 88765 67999999999998762 2 22
Q ss_pred HHHH-------HhhhhhH-----------HH---hccCCcHHHHHHHHHHHHhcCccc----C-hh---HHHHhhHHHHH
Q 015150 139 ELAI-------QHILPCV-----------KE---LSSDSSQHVRSALATVIMGMAPIL----G-KD---ATIEQLLPIFL 189 (412)
Q Consensus 139 ~~~~-------~~~~~~l-----------~~---~~~d~~~~vr~~~~~~l~~l~~~~----~-~~---~~~~~l~~~l~ 189 (412)
..+. ..+++.+ .. ...+.+.+.....+..+..+++.. . .+ ......+..+.
T Consensus 271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll 350 (1023)
T 4hat_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence 0111 1112211 11 112334555555666554443221 1 11 11112233455
Q ss_pred HhhcccChHHHHHHHHHHHHHHHhhchh-----hH---HhhHHHHHHHHhc---------C--CCc----------hHHH
Q 015150 190 SLLKDEFPDVRLNIISKLDQVNQVIGID-----LL---SQSLLPAIVELAE---------D--RHW----------RVRL 240 (412)
Q Consensus 190 ~~l~d~~~~vr~~~~~~l~~i~~~~~~~-----~~---~~~~~~~l~~~~~---------d--~~~----------~vr~ 240 (412)
.....++.++-..+...+..+...+-.+ .+ ...+.+.+.+-+. | ..| ....
T Consensus 351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f 430 (1023)
T 4hat_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLY 430 (1023)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHH
T ss_pred HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHH
Confidence 5555667788777777777776543211 11 1233333333211 1 122 1111
Q ss_pred -HHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHHhChh---hhhhhhHHHHHhhhc----
Q 015150 241 -AIIEYIPLLASQLGVGFFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMIN---- 310 (412)
Q Consensus 241 -~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~---- 310 (412)
..-.++..+....+. ...+.+.+.+.+.+.+ .+|..|++++.++|.+.+.+.++ .+...++|.+..+..
T Consensus 431 ~~~Rd~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~ 509 (1023)
T 4hat_C 431 KSEREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG 509 (1023)
T ss_dssp HHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence 111444444444333 4555566766666654 67999999999999999877643 345677788887775
Q ss_pred -CCchHHHHHHHHHHHHhccccchh-HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH----------HHhh
Q 015150 311 -NPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV----------VEKS 378 (412)
Q Consensus 311 -~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~----------~~~~ 378 (412)
|++..+|.+++..+|+.++.+... .+.+.+++.+++.+.|+++.|..+|++++..+++..+... +.+.
T Consensus 510 ~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~ 589 (1023)
T 4hat_C 510 KDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT 589 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Confidence 466778999999999999877543 4677888889999999999999999999999988755432 4456
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150 379 IRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 379 i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 411 (412)
++..+.....+-+.+-+..+.+|++.+++.+++
T Consensus 590 il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 666666666777788888999999999987763
No 76
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.46 E-value=1.8e-12 Score=106.19 Aligned_cols=187 Identities=12% Similarity=0.084 Sum_probs=137.7
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC---
Q 015150 25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--- 98 (412)
Q Consensus 25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~--- 98 (412)
.....+.+..+++++++.+|..|+.++..++...+. .......+|.+.+++.++++.+|..++.+|++++....
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 344566777889999999999999999999865322 12234588999999999999999999999999874211
Q ss_pred CCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc
Q 015150 99 PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL 175 (412)
Q Consensus 99 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 175 (412)
........+|.+..+++++++.+|..|+.+|..++...... ......+|.+.+++.++++.+|..++.++..++..-
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 11122347899999999999999999999999987532221 223457888888888888899999999888887532
Q ss_pred Chh---HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHH
Q 015150 176 GKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 211 (412)
Q Consensus 176 ~~~---~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~ 211 (412)
... ......++.+.+++.++++.+|..+..+|..++
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 111 112356788888888888888888888887765
No 77
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.9e-10 Score=107.14 Aligned_cols=363 Identities=8% Similarity=0.049 Sum_probs=225.5
Q ss_pred hHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc-hhhhhhhHHHHHhhccCCChH
Q 015150 4 VRRSAATNLGKFAATVE-AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQDKSWR 81 (412)
Q Consensus 4 vR~~a~~~l~~~~~~~~-~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~-~~~~~~l~~~l~~l~~d~~~~ 81 (412)
+..++.+.+...+-.-. .+.+.....+.+...+++ +.+|..|+-+|..+...-.. +.....+.+.+.+.+.+++..
T Consensus 272 ~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~ 349 (778)
T 3opb_A 272 FTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVP 349 (778)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCcc
Confidence 34445555554443211 233344455666666654 35666676777666654322 223345666666666665555
Q ss_pred HHHHHHHHHHHHHHHhC--CCC-cccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhC--------------------
Q 015150 82 VRYMVANQLYELCEAVG--PEP-TRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILN-------------------- 137 (412)
Q Consensus 82 vR~~~~~~l~~l~~~~~--~~~-~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~-------------------- 137 (412)
.|+.+++.|+.+...-. ... ..+..++.+.+++++ .+..+-..+...+..+....+
T Consensus 350 ~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~ 429 (778)
T 3opb_A 350 KVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXX 429 (778)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccC
Confidence 56677777766542211 000 012234444444442 333344444444443332111
Q ss_pred H---------------------HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh--hHHHHhhHHHHHHhhcc
Q 015150 138 P---------------------ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKD 194 (412)
Q Consensus 138 ~---------------------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d 194 (412)
+ ......++|.+..+++..++.+|..+++++..++..-.. ....+..++.+..++.+
T Consensus 430 p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s 509 (778)
T 3opb_A 430 PAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLAN 509 (778)
T ss_dssp -----CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTC
T ss_pred cccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc
Confidence 0 001233788889999899999999999999999754322 22335678888888877
Q ss_pred cChH---HHHHHHHHHHHHHHhhchhhHH-----hhHHHHHHHHhcC-CCc-------------hHHHHHHHHhhHHHhh
Q 015150 195 EFPD---VRLNIISKLDQVNQVIGIDLLS-----QSLLPAIVELAED-RHW-------------RVRLAIIEYIPLLASQ 252 (412)
Q Consensus 195 ~~~~---vr~~~~~~l~~i~~~~~~~~~~-----~~~~~~l~~~~~d-~~~-------------~vr~~~~~~l~~l~~~ 252 (412)
.... +|..|+.+|..+.....+.... ...+|.+..++.. +.. .-+..++.++..++..
T Consensus 510 ~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~ 589 (778)
T 3opb_A 510 KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS 589 (778)
T ss_dssp C---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC
Confidence 6443 8999999999998554433221 2567888888872 221 1266788888888876
Q ss_pred hCh------h-hHH-HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---hhhhh------hhHHHHHhhhcCCchH
Q 015150 253 LGV------G-FFD-DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQ------HIVPQVLEMINNPHYL 315 (412)
Q Consensus 253 ~~~------~-~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~------~~l~~l~~~~~~~~~~ 315 (412)
-+. . .+. ...+|.+..++.+++..||.+|++++..+...-.. +++.. .-++.+..++...+..
T Consensus 590 ~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~ 669 (778)
T 3opb_A 590 ETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVE 669 (778)
T ss_dssp CSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHH
T ss_pred CcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHH
Confidence 421 1 233 35889999999999999999999999999864321 22211 1267888999999999
Q ss_pred HHHHHHHHHHHhccccch--hH-HH-HhhHHHHHhhcCC--CCchHHHHHHHHHHHHhh
Q 015150 316 YRMTILQAISLLAPVMGS--EI-TC-SQLLPVVINASKD--RVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 316 ~r~~~~~~l~~l~~~~~~--~~-~~-~~il~~l~~~l~d--~~~~vR~~~~~~l~~l~~ 368 (412)
+|.++..++..+....+. .. +. ...++.++..+++ +++++|..++.++..++.
T Consensus 670 ~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 670 SQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 999999999998543322 11 12 2467777888888 899999999999999986
No 78
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.38 E-value=1.7e-09 Score=81.33 Aligned_cols=217 Identities=16% Similarity=0.150 Sum_probs=162.5
Q ss_pred HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHH-HhcCCCchHHHHHHHHhhHHHhhhChhhHH
Q 015150 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFD 259 (412)
Q Consensus 181 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 259 (412)
.+.++..+..+++|+-|.||+++++.+..+.+... +.+ ..+..-+.- +-+++.-..-+.....++.++..-+ + ..
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~-el~-epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-e-~v 105 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE-DLY-EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-E-LV 105 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG-GGH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH-H-HH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH-HHH-HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH-H-HH
Confidence 35677888899999999999999999998887643 222 222333333 3466666777788888998887543 2 34
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHh
Q 015150 260 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ 339 (412)
Q Consensus 260 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~ 339 (412)
..++|++..-..-.++.+|-....+|+++.... +.....+...+..++.+++..-|.+++.+++.+.... . .|..-
T Consensus 106 ~~vVp~lfanyrigd~kikIn~~yaLeeIaran--P~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-~-~yv~P 181 (253)
T 2db0_A 106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKAN--PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-F-KYVNP 181 (253)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-H-HHHGG
T ss_pred HhhHHHHHHHHhcCCccceecHHHHHHHHHHhC--hHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-c-cccCc
Confidence 558999988888788999999999999998754 2234556677778888999888999999998876432 2 35667
Q ss_pred hHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150 340 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 340 il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 408 (412)
++|.+..+|.|.+.-||.++..+|++++.. .+. +..-+...+. -++|++..|...+.++++.+.-.
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~-npk-lRkii~~kl~-e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATL-NDK-LRKVVIKRLE-ELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHH-HHHHHHHHHH-HCCCSCHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHH-HHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999863 221 3333333333 35999999999999999988654
No 79
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.36 E-value=1.3e-10 Score=95.81 Aligned_cols=180 Identities=16% Similarity=0.162 Sum_probs=125.3
Q ss_pred HHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHH--HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh------hh
Q 015150 226 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD------WA 297 (412)
Q Consensus 226 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~ 297 (412)
.+...+-+++|+.|.++++.+.........+.+. +-+++-+.-.+.|.+..|-..++..+..++..++.. .-
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 3444555667888887777777665443222111 112222222345788888888888888877665432 11
Q ss_pred hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHh
Q 015150 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEK 377 (412)
Q Consensus 298 ~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~ 377 (412)
...++|.+.+-++|++..+|..+-..+..+...++.. .+++.+.+.++++++.+|..++..++.+.+.+|.. ..
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~ 203 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PL 203 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GG
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--cc
Confidence 3467888888888888888888888887776655543 56666777788888888888888888888887765 23
Q ss_pred hHH---HHHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150 378 SIR---PCLVELSEDPDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 378 ~i~---~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 411 (412)
..+ |.+.++++|+|.+||..|..++..+...+|+
T Consensus 204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 466 8888888888888888888888888888875
No 80
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.36 E-value=2e-10 Score=111.83 Aligned_cols=288 Identities=14% Similarity=0.187 Sum_probs=210.1
Q ss_pred HHHHhccCCchHHHHHHHHhHHHHhhc-cCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC----cccc
Q 015150 31 IFEELTQDDQDSVRLLAVEGCGALGKL-LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSD 105 (412)
Q Consensus 31 ~l~~l~~~~~~~~r~~a~~~l~~i~~~-~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~ 105 (412)
++..+..++..+ |..++..+..+... .........++..+.+...++... ..++..++.++...+... +.-.
T Consensus 19 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~ 95 (986)
T 2iw3_A 19 LFQKLSVATADN-RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ 95 (986)
T ss_dssp HHHHHTTCCTTT-HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred HHhhccccchhH-HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence 333344433333 45555566655543 222222346888888888886544 889999999997665321 2224
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCC-cHHHHHHHHHHHHhcCcccChhH--HHH
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGKDA--TIE 182 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~--~~~ 182 (412)
++|.+...+.|....||.+|..+...+...++++.. ..++|.+...+.+. .|..+..++.++..++...+... ...
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~ 174 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMP 174 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 678888999999999999999999999999998765 67889988887654 69999999999999987653322 236
Q ss_pred hhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC----hhhH
Q 015150 183 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFF 258 (412)
Q Consensus 183 ~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~ 258 (412)
.++|.+...+.|..++|..++..++..++..++...+ ..++|.+.+.+.+++. .-++++.++...- ....
T Consensus 175 ~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~ 248 (986)
T 2iw3_A 175 ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEVTPAT 248 (986)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHH
T ss_pred chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeecchh
Confidence 8999999999999999999999999999998886655 6778999999988843 2334444433210 1123
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh----hhhhhhHHHHHhhhcC-CchHHHHHHHHHHHHhc
Q 015150 259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMINN-PHYLYRMTILQAISLLA 328 (412)
Q Consensus 259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~ 328 (412)
...+.|++...|+++...+++.++..+..+++.+..+ .|...++|.+.+.... .++.+|+.+-.++..+.
T Consensus 249 l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 249 LSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999998877653 3456677777665543 45888988888877774
No 81
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.6e-11 Score=104.90 Aligned_cols=182 Identities=15% Similarity=0.150 Sum_probs=132.1
Q ss_pred HHHHhcCCCchHHHHHHHHhhHHHhhhChhhH-------HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh---
Q 015150 227 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-------DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--- 296 (412)
Q Consensus 227 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--- 296 (412)
+.+-+.+++|+.|..+++.+..+......... ...+.+.+-+.+.|.|..|...++.++..++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 55678899999999999888777654432211 11234566778889999999999999998887665321
Q ss_pred -----hhhhhHHHHHh-hhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh
Q 015150 297 -----AMQHIVPQVLE-MINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 370 (412)
Q Consensus 297 -----~~~~~l~~l~~-~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 370 (412)
....++|.+.+ .+.+....+|..++.++..++...+. ...+++.+...+++++|.+|..++.+|..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 23456777765 47888888999988888877654432 2345677788889999999999999999988877
Q ss_pred chH-----HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150 371 DQS-----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 371 ~~~-----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 411 (412)
|.. .....+++.+..+++|+|++||..|...+..+...+|.
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 753 23345677777888999999999999999999988874
No 82
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.34 E-value=3.8e-10 Score=98.98 Aligned_cols=251 Identities=12% Similarity=0.049 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHHHhhC--HHHHHHhhhhhHHHhcc-----------CCcHHHHHHHHHHHHhcCcccC--hhHH--HH
Q 015150 120 EVRIAAAGKVTKICRILN--PELAIQHILPCVKELSS-----------DSSQHVRSALATVIMGMAPILG--KDAT--IE 182 (412)
Q Consensus 120 ~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~-----------d~~~~vr~~~~~~l~~l~~~~~--~~~~--~~ 182 (412)
.....|+.+|+.++..-. ........++.+..++. ..++.++..++.++..++..-. +..+ ..
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 334455666666553211 11122334555555542 1356889999999999985332 1222 23
Q ss_pred hhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc---hhh-HHhhHHHHHHHH-hcCCCchHHHHHHHHhhHHHhhh-C-h
Q 015150 183 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDL-LSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQL-G-V 255 (412)
Q Consensus 183 ~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~---~~~-~~~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~-~-~ 255 (412)
..+|.+..++++++++++..++.+|..+...-+ ... .....+|.+.++ ..+.++.++..++.++..++... + .
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 568999999999999999999999988865311 122 224568888886 56678899998888888887632 1 1
Q ss_pred -hhH-HHHHHHHHHHHhcCchh----HHHHHHHHHHHHHHHHh--Chh---h-hhhhhHHHHHhhhcCCchHHHHHHHHH
Q 015150 256 -GFF-DDKLGALCMQWLKDKVY----SIRDAAANNVKRLAEEF--GPD---W-AMQHIVPQVLEMINNPHYLYRMTILQA 323 (412)
Q Consensus 256 -~~~-~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~--~~~---~-~~~~~l~~l~~~~~~~~~~~r~~~~~~ 323 (412)
... ....+|.+.+++.+.+. .+++.|+.+|..+...+ +++ . .....+|.+.+++.+.+..++..++.+
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a 286 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT 286 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence 112 24578889999986654 58999999888887531 221 1 123578999999999999999999999
Q ss_pred HHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh
Q 015150 324 ISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 370 (412)
Q Consensus 324 l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 370 (412)
+..++...... ......+|.|.+++.++++.+|..++.+|..+...-
T Consensus 287 L~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 287 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99998432221 234467999999999999999999999999998753
No 83
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.33 E-value=2.3e-10 Score=100.34 Aligned_cols=250 Identities=12% Similarity=0.005 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHhcCcccC--hhHHHHhhHHHHHHhhc-----------ccChHHHHHHHHHHHHHHHhhc--hhhH--Hh
Q 015150 159 HVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLK-----------DEFPDVRLNIISKLDQVNQVIG--IDLL--SQ 221 (412)
Q Consensus 159 ~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~-----------d~~~~vr~~~~~~l~~i~~~~~--~~~~--~~ 221 (412)
.....++++|++++..-. +.......+|.+..++. ..++.+|..++.+|..++..-. ...+ ..
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 444566777777763311 11112345666666663 1247799999999999975432 1222 24
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hh-HHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHh-C--
Q 015150 222 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF-FDDKLGALCMQW-LKDKVYSIRDAAANNVKRLAEEF-G-- 293 (412)
Q Consensus 222 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~-~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~-~-- 293 (412)
.++|.+.+++.++++.++..++.+|..++..-+. .. .....+|.++++ ++..+..+++.|+.++..+.... +
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 5699999999999999999999999999764111 11 223457888886 56677889999999998887522 1
Q ss_pred hhhh-hhhhHHHHHhhhcCCch----HHHHHHHHHHHHhccc--cchh----HHHHhhHHHHHhhcCCCCchHHHHHHHH
Q 015150 294 PDWA-MQHIVPQVLEMINNPHY----LYRMTILQAISLLAPV--MGSE----ITCSQLLPVVINASKDRVPNIKFNVAKV 362 (412)
Q Consensus 294 ~~~~-~~~~l~~l~~~~~~~~~----~~r~~~~~~l~~l~~~--~~~~----~~~~~il~~l~~~l~d~~~~vR~~~~~~ 362 (412)
.... ....+|.|.+++.+++. .++..++.++..++.. .+.+ ......+|.+++++.+++..++..++.+
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a 286 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT 286 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence 1222 35688999998886543 5888888889888742 1222 1233579999999999999999999999
Q ss_pred HHHHhhhhch---HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150 363 LQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 363 l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 408 (412)
|..++..-.. .......+|.|..++.+++.++|..|+.+|..+...
T Consensus 287 L~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 287 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 9999742111 133457899999999999999999999999998764
No 84
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.30 E-value=8.3e-08 Score=95.57 Aligned_cols=403 Identities=13% Similarity=0.052 Sum_probs=239.1
Q ss_pred chhHHHHHHHHHHHHHH----hhh---hhhHHHHHHHHHHhccCC-----chHHHHHHHHhHHHHhhccCchhhhhhhHH
Q 015150 2 PMVRRSAATNLGKFAAT----VEA---AHLKSEIMSIFEELTQDD-----QDSVRLLAVEGCGALGKLLEPQDCVAHILP 69 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~----~~~---~~~~~~l~~~l~~l~~~~-----~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~ 69 (412)
+.||.-++..|...++. +++ ..+.+.++..+.....++ ++.++...+.++..++.+.-++ .++.+++
T Consensus 75 ~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~-~Wp~fi~ 153 (1073)
T 3gjx_A 75 MNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK-HWPTFIS 153 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT-TCTTHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh-hccHHHH
Confidence 67899999999998874 222 345667777776655432 4567777788888888774333 3566777
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHHHHhCCCC------------------cccchHHHHHHhcC-CChHHHHHHHHHHHH
Q 015150 70 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEP------------------TRSDVVPAYVRLLR-DNEAEVRIAAAGKVT 130 (412)
Q Consensus 70 ~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~------------------~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~ 130 (412)
-+.+.++. ++..+...+..|..+.+....-. ..+.+++.+...++ ..++.+...++++++
T Consensus 154 dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~ 232 (1073)
T 3gjx_A 154 DIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLL 232 (1073)
T ss_dssp HHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 77766643 34566777788887777643210 01345555555553 456788889999999
Q ss_pred HHHHhhCHHHHH-HhhhhhH-HHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHH---H----Hhh---------
Q 015150 131 KICRILNPELAI-QHILPCV-KELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF---L----SLL--------- 192 (412)
Q Consensus 131 ~l~~~~~~~~~~-~~~~~~l-~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l---~----~~l--------- 192 (412)
.+...++...+. +.+++.+ ...+. ++..|.++++++..+...-.+ .+.+.+...+ . .++
T Consensus 233 ~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~-~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~ 309 (1073)
T 3gjx_A 233 RFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVS-QYEEQFETLFTLTMMQLKQMLPLNTNIRLA 309 (1073)
T ss_dssp HHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSG-GGHHHHHHHHHHHHHHHHHHSCTTSCHHHH
T ss_pred HHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 999988766543 3466766 45554 567999999999998754211 1112221111 1 111
Q ss_pred ----cccChHHHHHHHHHHHHHHHhhc------hh--hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh----
Q 015150 193 ----KDEFPDVRLNIISKLDQVNQVIG------ID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---- 256 (412)
Q Consensus 193 ----~d~~~~vr~~~~~~l~~i~~~~~------~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---- 256 (412)
.+++++.-.+....+..+++... ++ ......+..+..+...++..+=..+...+..+...+-.+
T Consensus 310 y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~ 389 (1073)
T 3gjx_A 310 YSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFS 389 (1073)
T ss_dssp HHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred HhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 12222332223333333322211 11 011122333455666667777666666666655433100
Q ss_pred --------------------hH---HHHHHHHHHHHhcCc---------------------hh-HHHHHHHHHHHHHHHH
Q 015150 257 --------------------FF---DDKLGALCMQWLKDK---------------------VY-SIRDAAANNVKRLAEE 291 (412)
Q Consensus 257 --------------------~~---~~~l~~~l~~~l~d~---------------------~~-~vr~~a~~~l~~l~~~ 291 (412)
.+ ...+...++.-+.-+ +. ..+...-.++.. +..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~-lt~ 468 (1073)
T 3gjx_A 390 TSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVY-LTH 468 (1073)
T ss_dssp CCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHH-HHH
T ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHH-Hhc
Confidence 01 122333333333211 10 122222222322 233
Q ss_pred hChhhhhhhhHHHHHhhhc--CCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCC-----CchHHHHHHH
Q 015150 292 FGPDWAMQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDR-----VPNIKFNVAK 361 (412)
Q Consensus 292 ~~~~~~~~~~l~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~-----~~~vR~~~~~ 361 (412)
++.+.....+++.+.+.+. ..+|+.+++.+.++|.++..+..+ .+...+++.++.+...+ .+.++..++.
T Consensus 469 l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~ 548 (1073)
T 3gjx_A 469 LDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMY 548 (1073)
T ss_dssp HCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHH
Confidence 4444444455566655443 356999999999999998877742 57788888888877544 3446666778
Q ss_pred HHHHHhhhhchH-HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150 362 VLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 410 (412)
Q Consensus 362 ~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~ 410 (412)
++|.....+... .+.+.++..+...+.|+++.|+..|+.|+..+++..+
T Consensus 549 vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~ 598 (1073)
T 3gjx_A 549 IVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCR 598 (1073)
T ss_dssp HHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTG
T ss_pred HHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 888887665432 3556677777777889999999999999999998765
No 85
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.28 E-value=8.3e-10 Score=94.21 Aligned_cols=209 Identities=12% Similarity=0.057 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHhhch--hhHHhhHHHHHHH-HhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhc
Q 015150 198 DVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLK 271 (412)
Q Consensus 198 ~vr~~~~~~l~~i~~~~~~--~~~~~~~~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~ 271 (412)
+-|..++..|..++...+. +......+|.+.. ++.++++.+|..++.+++.++..... .......+|.++.+|+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 5677777788877765442 1222356788888 99999999999999999999864321 1223346788888888
Q ss_pred -CchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch---hHHHHhhHHHH
Q 015150 272 -DKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVV 344 (412)
Q Consensus 272 -d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~il~~l 344 (412)
+++..+|..|+.+|+.++....+ .+.....+|.|..++.+++..++..++++++.++..... ......++|.+
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 45789999999999999864322 223346889999999999999999999999999865221 12455789999
Q ss_pred HhhcCCCCchHHHHHHHHHHHHhhhhchH---------HHHhhHHHHHHhhc-CCCCccHHHHHHHHHHHhH
Q 015150 345 INASKDRVPNIKFNVAKVLQSLIPIVDQS---------VVEKSIRPCLVELS-EDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 345 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---------~~~~~i~~~l~~l~-~d~~~~vr~~a~~al~~~~ 406 (412)
..++.++++.||..++.+|+.+....... .+...+-+.+..+. .+...++...+...+..+.
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999998762211 11122323334443 2234677777777776654
No 86
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.28 E-value=1.3e-10 Score=100.58 Aligned_cols=282 Identities=10% Similarity=0.040 Sum_probs=143.5
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 015150 26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD 105 (412)
Q Consensus 26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 105 (412)
..+.+-+.++..+++...|+...-.+..+++. +++ .. .+.+.+.+-++|+++-+|-.+++.++.+.. ....++
T Consensus 67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~ 139 (355)
T 3tjz_B 67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQA 139 (355)
T ss_dssp HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHH
Confidence 44566667778888888888877777776665 222 22 667777778888888888888888887753 223456
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhH
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 185 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 185 (412)
+.+.+.+.+.|.++.||+.|+-+...+.... ++ ..+.+++.+.+++.|+++.|...++..+..+...- ......++
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe-~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d--~~a~~kLv 215 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCS-FD-VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND--RLAVSKMI 215 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HH-HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-HH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--hHHHHHHH
Confidence 7777888888888888888888888776543 33 23457777788888888888877777777765421 11223344
Q ss_pred HHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHH
Q 015150 186 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 265 (412)
Q Consensus 186 ~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 265 (412)
+.+.+. .-.++..+...++.+..++..- .......+++.+...+++.++.|-..++.++-.+... +... .....+.
T Consensus 216 ~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~-~~~~-~~~a~~~ 291 (355)
T 3tjz_B 216 SKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC-SAKE-LAPAVSV 291 (355)
T ss_dssp HHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCT
T ss_pred HHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC-CHHH-HHHHHHH
Confidence 443321 0112433333444443333221 0122345667777777778888888888777665442 2111 1223445
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHH
Q 015150 266 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAI 324 (412)
Q Consensus 266 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l 324 (412)
+..++..+++++|..|+..+..+...... .....-..+.+++.|++..++..|+..+
T Consensus 292 L~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 292 LQLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 55667777778888888888777764321 1233445566677777766665555444
No 87
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.27 E-value=8.3e-11 Score=101.89 Aligned_cols=283 Identities=10% Similarity=0.084 Sum_probs=157.3
Q ss_pred chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhh
Q 015150 105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL 184 (412)
Q Consensus 105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 184 (412)
.+++.+.+++..++...|+.....+..+++. .++.+ -+...+.+-++|+++.+|..+..+++.+.. +...+.+
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l 140 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI--IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQAI 140 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG--GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH--HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHH
Confidence 4566677889999999999999988888776 23322 356677777889999999999999998864 2345688
Q ss_pred HHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHH
Q 015150 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 264 (412)
Q Consensus 185 ~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 264 (412)
.+.+.+.+.|.++.||++|+-+...+... .++.. +.+++.+.+++.|.++.|...++..+..+.+.- . .....+++
T Consensus 141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~-~a~~kLv~ 216 (355)
T 3tjz_B 141 ERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-R-LAVSKMIS 216 (355)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-H-HHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-h-HHHHHHHH
Confidence 89999999999999999999888877655 34443 568888899999999999988888887776532 1 11222333
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHH
Q 015150 265 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV 344 (412)
Q Consensus 265 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l 344 (412)
.+... .-.+++.....++.+..+...- .+.....+++.+...+++.+..|-..++.++..+.. .+.. ......+.+
T Consensus 217 ~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~-~~~~a~~~L 292 (355)
T 3tjz_B 217 KFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK-ELAPAVSVL 292 (355)
T ss_dssp HHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCTH
T ss_pred HHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH-HHHHHHHHH
Confidence 32211 0113444444444443333211 012345688888888899999888888888877654 2222 223344556
Q ss_pred HhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHH
Q 015150 345 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 404 (412)
Q Consensus 345 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~ 404 (412)
..++..+.+++|..+++.+..+...... ..+.....+..+++|+|..++..|...+-.
T Consensus 293 ~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 293 QLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp HHHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 6667788899999999999999874332 234566778888999999999888877644
No 88
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.26 E-value=8.1e-11 Score=104.25 Aligned_cols=257 Identities=13% Similarity=0.081 Sum_probs=169.5
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhH
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 185 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 185 (412)
+...+..-+-|+.|++|-.|+-+|..+.+..+..... . -..+.+-.+|-.++-++.+++...++..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR--~------~~~N~DLAvRLLCVLALDRFGDYVSDqV------ 240 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDI--Q------IRVDSKLFSKIYEILVTDKFNDFVDDRT------ 240 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----C--C------CCCCTTHHHHHHHHHHHBCCBBCSSSSC------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCce--e------ccccHHHHHHHHHHHHhccccccccCee------
Confidence 6677777788999999999999999988876542111 0 1122244555555555555554433221
Q ss_pred HHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHH
Q 015150 186 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 265 (412)
Q Consensus 186 ~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 265 (412)
-..||..++++|+.+ ..++.+ ..++..+......+.|.+|.+.+-.+..+...+.. .+.++|.
T Consensus 241 ----------VAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a 303 (800)
T 3oc3_A 241 ----------VAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK 303 (800)
T ss_dssp ----------BCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred ----------eeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence 246999999999999 776655 23444444556788999999988888777333322 5778999
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHH
Q 015150 266 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI 345 (412)
Q Consensus 266 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~ 345 (412)
++..|+|.+.+||..|+.+|..++..-..+.+.+.+...|.+. .|-+ .--...+..++.++..-......+.++|.+.
T Consensus 304 VL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~L-DDLS-ASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~ 381 (800)
T 3oc3_A 304 LVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESE-ELIS-VSKTSNLSLLTKIYRENPELSIPPERLKDIF 381 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTC-CSCC-TTHHHHHHHHHHHHHHCTTCCCCSGGGGGTG
T ss_pred HHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhh-cccc-hhhHHHHHHHHHHHcCCcccccChHHHHHHH
Confidence 9999999999999999999988771111122223333333333 3322 1223445555555432111112248899999
Q ss_pred hhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHh-hcCCCCccHHHHHHHHHH
Q 015150 346 NASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFATQALQ 403 (412)
Q Consensus 346 ~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~-l~~d~~~~vr~~a~~al~ 403 (412)
.++.++.++||.++++++..+. ...++..+-+ ++-+++.+|+..+.++..
T Consensus 382 PFLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 382 PCFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999999999998776 2345555544 677888999999888874
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.24 E-value=1.7e-09 Score=89.28 Aligned_cols=179 Identities=15% Similarity=0.097 Sum_probs=133.6
Q ss_pred hhcccChHHHHHHHHHHHHHHHhhchhhH--HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh------hHHHHH
Q 015150 191 LLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG------FFDDKL 262 (412)
Q Consensus 191 ~l~d~~~~vr~~~~~~l~~i~~~~~~~~~--~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l 262 (412)
.+-+.+..-|..++..|.........+.+ .+.+++-+.-.+.|++..+-..+++.+..+...++.. .-...+
T Consensus 54 ~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~ 133 (266)
T 2of3_A 54 QLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF 133 (266)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 33344566666666666555443221111 1223443333445889999999999888887665332 113568
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhH-
Q 015150 263 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLL- 341 (412)
Q Consensus 263 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il- 341 (412)
+|.++.-+.|....||..+-..+..+....++ ..+++.+.+.+++.||+.|+.++..++.+.+..|..+ ...+
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~ 207 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LKSLS 207 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--ccccc
Confidence 99999999999999999999998888776544 3477888888899999999999999999998888762 4567
Q ss_pred --HHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHH
Q 015150 342 --PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV 375 (412)
Q Consensus 342 --~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~ 375 (412)
|.+.+++.|++.+||.+|+.++..++...|+..+
T Consensus 208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~ 243 (266)
T 2of3_A 208 VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW 243 (266)
T ss_dssp HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999998888643
No 90
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.23 E-value=8.5e-10 Score=94.13 Aligned_cols=171 Identities=18% Similarity=0.129 Sum_probs=128.2
Q ss_pred HHHHHHHHhhHHHhhhCh--hhHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHhC---hhhhhhhhHHHHHhhhc-
Q 015150 238 VRLAIIEYIPLLASQLGV--GFFDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQVLEMIN- 310 (412)
Q Consensus 238 vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~l~~l~~~~~- 310 (412)
-|..++..|..++..... .......+|.++. +|+++++.||..|+.+++.++.... ...+....+|.|..++.
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 344555555555543321 1112235677888 9999999999999999999986321 11223468889999888
Q ss_pred CCchHHHHHHHHHHHHhccccch--h-HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch---HHHHhhHHHHHH
Q 015150 311 NPHYLYRMTILQAISLLAPVMGS--E-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLV 384 (412)
Q Consensus 311 ~~~~~~r~~~~~~l~~l~~~~~~--~-~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~ 384 (412)
+++..+|..++++++.++..... + +.....+|.+..+++++++.+|..++++|+.++..-.. ......++|.|.
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 45788999999999999865443 2 33457899999999999999999999999999865221 234567899999
Q ss_pred hhcCCCCccHHHHHHHHHHHhHHh
Q 015150 385 ELSEDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 385 ~l~~d~~~~vr~~a~~al~~~~~~ 408 (412)
.++.+++.+||..+..+++.+...
T Consensus 216 ~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 216 ALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999998764
No 91
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.20 E-value=2.9e-08 Score=74.76 Aligned_cols=214 Identities=16% Similarity=0.208 Sum_probs=150.8
Q ss_pred HhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhh-cccChHHHHHHHHHHHHHHHhhchhhHHh
Q 015150 143 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQ 221 (412)
Q Consensus 143 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~~~~~l~~i~~~~~~~~~~~ 221 (412)
..++..+..++.|.-|.|+..+...+..+++....- .+.++.-+..++ +++.-..-....++++.++.. .++.+ .
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el--~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~v-~ 106 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL--YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPELV-K 106 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG--HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHHH-H
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH--HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHHH-H
Confidence 346677777888888999999888888887654321 122222233332 344455556677888888765 34433 6
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhh
Q 015150 222 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI 301 (412)
Q Consensus 222 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 301 (412)
.++|.+..-..-.++++|......+..++...+. ....+..-+..++.+++..=|.+|+..++.+..+ +.++ ...+
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~~y-v~Pf 182 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFKY-VNPF 182 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-THHH-HGGG
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-Cccc-cCcc
Confidence 7778887766667899999999899888876532 2344555667888999888888887766554331 2222 3568
Q ss_pred HHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150 302 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 367 (412)
Q Consensus 302 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~ 367 (412)
+|.+..++.|.+..+|..++++++.++..-++ ...++..-++-++|++.-|...+-..|+.+.
T Consensus 183 LprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 183 LPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999865443 4556666677789999888888888888775
No 92
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=99.18 E-value=3.7e-10 Score=89.83 Aligned_cols=138 Identities=21% Similarity=0.246 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHh-hccCCChHHHHHHHHHHHHHHHHhCCCCcc
Q 015150 25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR 103 (412)
Q Consensus 25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~ 103 (412)
.+.++++...+.+++.+++|..|+.+++.. . ....+++.+.. +..|++|+||..++.+++.++...+.+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 355667777777777777777777766665 2 12457777776 677777888877777777777543333
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCc
Q 015150 104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 173 (412)
Q Consensus 104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 173 (412)
..++.+...+.|++..||..|++.+..++.........+.++|.+..+..|++..||.++++.|..+++
T Consensus 139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 256677777777777777777777644443211122233466777777777777777777777777664
No 93
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.17 E-value=1e-09 Score=93.65 Aligned_cols=183 Identities=11% Similarity=0.070 Sum_probs=130.0
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHhhCHHHH-------HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhH---
Q 015150 110 YVRLLRDNEAEVRIAAAGKVTKICRILNPELA-------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--- 179 (412)
Q Consensus 110 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--- 179 (412)
+.+-+.+.+|..|..|++.+..+......... ...+.+.+.+.+.|.|..|...+++++..++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 55677788888888888888776654332211 12245666777888888888888888887776554321
Q ss_pred -----HHHhhHHHHHH-hhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh
Q 015150 180 -----TIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 253 (412)
Q Consensus 180 -----~~~~l~~~l~~-~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 253 (412)
....++|.+.. .+.|..+.+|..+..++..++...... ..+++.+...+++++|++|..++.++..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 22455666654 578888999999888888777654321 335666777889999999999999999999888
Q ss_pred Chhh-----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh
Q 015150 254 GVGF-----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 295 (412)
Q Consensus 254 ~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 295 (412)
|... ..+.+++.+..++.|.++.||.+|...++.+...+|..
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 7543 23456677788899999999999999999999988864
No 94
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.15 E-value=2.2e-07 Score=92.62 Aligned_cols=405 Identities=7% Similarity=0.019 Sum_probs=238.0
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---h---------------hh
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---Q---------------DC 63 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~---------------~~ 63 (412)
|.++.+.+.++..+++..-++. |+.+++.+...++.. +..+...+.+|..+.+...+ . ..
T Consensus 126 ~~vinKLa~~La~I~k~~~P~~-Wp~fi~dLv~~~~~~-~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~ 203 (1073)
T 3gjx_A 126 KVYIGKLNMILVQILKQEWPKH-WPTFISDIVGASRTS-ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE 203 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhChhh-ccHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 4567788888888887643333 666777766666543 44566777777777766321 0 01
Q ss_pred hhhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHHhCCCC-cccchHHHH-HHhcCCChHHHHHHHHHHHHHHHHh-hCH-
Q 015150 64 VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAY-VRLLRDNEAEVRIAAAGKVTKICRI-LNP- 138 (412)
Q Consensus 64 ~~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l-~~~l~d~~~~vr~~a~~~l~~l~~~-~~~- 138 (412)
.+.+++++...++ ..++.+...+.++++.+..-.+-+. ....+++.+ ..++++ +..|..|+++|..+... .++
T Consensus 204 ~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~~--~~~r~aA~dcL~eIv~k~~~~~ 281 (1073)
T 3gjx_A 204 FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLNV--PMFRNVSLKCLTEIAGVSVSQY 281 (1073)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSSS--HHHHHHHHHHHHHHHHSCSGGG
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcCC--hHHHHHHHHHHHHHHhccccch
Confidence 1235555555443 4567888889999998887665433 235688877 577764 67999999999998754 211
Q ss_pred -HHH---HHhhhhhHHHh-------------ccCCcHHHHHHHHHHHHhcCcccCh------h--HHHHhhHHHHHHhhc
Q 015150 139 -ELA---IQHILPCVKEL-------------SSDSSQHVRSALATVIMGMAPILGK------D--ATIEQLLPIFLSLLK 193 (412)
Q Consensus 139 -~~~---~~~~~~~l~~~-------------~~d~~~~vr~~~~~~l~~l~~~~~~------~--~~~~~l~~~l~~~l~ 193 (412)
+.+ .+.++..+... ..+.++..-...+..+..+++.... + ......+..+..+..
T Consensus 282 ~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~ 361 (1073)
T 3gjx_A 282 EEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSE 361 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhC
Confidence 111 11111111111 1223333334444444444332111 1 111122333455555
Q ss_pred ccChHHHHHHHHHHHHHHHhhchhh--------------------HHhhHHHHHHHH-------hc---------CCC-c
Q 015150 194 DEFPDVRLNIISKLDQVNQVIGIDL--------------------LSQSLLPAIVEL-------AE---------DRH-W 236 (412)
Q Consensus 194 d~~~~vr~~~~~~l~~i~~~~~~~~--------------------~~~~~~~~l~~~-------~~---------d~~-~ 236 (412)
-++.++-+.+...+..+...+-.+. ....+.|.+.++ +. ++. .
T Consensus 362 ~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge 441 (1073)
T 3gjx_A 362 VEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGE 441 (1073)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccch
Confidence 6678888888877777665542110 111122222221 11 110 0
Q ss_pred h------------HHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHHhChh---hhhh
Q 015150 237 R------------VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPD---WAMQ 299 (412)
Q Consensus 237 ~------------vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~---~~~~ 299 (412)
. .+...-.++..+. .++.......+.+.+.+.++. .+|..+++++.++|.+...+.++ .+..
T Consensus 442 ~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp 520 (1073)
T 3gjx_A 442 VVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV 520 (1073)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence 0 1112222333333 344444555566666555443 46899999999999998766542 3445
Q ss_pred hhHHHHHhhhcCC-----chHHHHHHHHHHHHhccccchh-HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH
Q 015150 300 HIVPQVLEMINNP-----HYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 373 (412)
Q Consensus 300 ~~l~~l~~~~~~~-----~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 373 (412)
.+++.+..+..++ ...++...+..+|+....+... .+.+.++..+++.+.|+++.|..+|+.++..+++.-+..
T Consensus 521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777666443 4567777888999988776543 477888888999999999999999999999998765442
Q ss_pred ----------HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150 374 ----------VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 411 (412)
Q Consensus 374 ----------~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~ 411 (412)
.+.+.++..+.....+=+++-.....+|++.++...+.
T Consensus 601 lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~ 648 (1073)
T 3gjx_A 601 FVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTD 648 (1073)
T ss_dssp GTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Confidence 23344555555555666666667778888888776653
No 95
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.14 E-value=5.6e-12 Score=94.45 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHH
Q 015150 259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCS 338 (412)
Q Consensus 259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~ 338 (412)
.+.-.+.+...|+|+++.+|..|+..|+.+ +.. . ++.+.+.++|+++.+|..++.+++.+.. +
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~----~~~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~ 72 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRM----GDE----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------E 72 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSC----SST----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------H
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHh----Cch----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------H
Confidence 344666778888888888998888887653 222 1 4778888888889999999998888752 3
Q ss_pred hhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHh
Q 015150 339 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK 405 (412)
Q Consensus 339 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~ 405 (412)
..++.+...++|+++.||..++++|+.+.. ...+|.|..+++|+++.||..+..+++.|
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 457777888888999999999999988763 35678888888899999999999888754
No 96
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.13 E-value=3e-08 Score=78.07 Aligned_cols=222 Identities=12% Similarity=0.074 Sum_probs=171.6
Q ss_pred hhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh-hhH
Q 015150 183 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-GFF 258 (412)
Q Consensus 183 ~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-~~~ 258 (412)
..+..+..+++|.++.++.+++..++.+.+..+. ....+.++|.+..++.+++.++-..++.++..+....+. +..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 4567788889999999999999999999887432 233478899999999999999999999999999887642 223
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHH
Q 015150 259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCS 338 (412)
Q Consensus 259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~ 338 (412)
...+...+.....+++.-.+..|+..++.+ ..-.....+...+..++.+++.+++.+++.++..++...+......
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~ 188 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT 188 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH
Confidence 455788888889999999999999999887 2333356788888888899999999999999999987666555666
Q ss_pred hhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh-chH--HHHhhHHHHHHhhc-CCCCccHHHHHHHHHHHhHHh
Q 015150 339 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-DQS--VVEKSIRPCLVELS-EDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 339 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~-~~~--~~~~~i~~~l~~l~-~d~~~~vr~~a~~al~~~~~~ 408 (412)
.++.-+-.+++.+++.++..++.++..+...- ..+ .-...+...+..+. --..+.+|..|......+-.+
T Consensus 189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~~ 262 (265)
T 3b2a_A 189 LILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSV 262 (265)
T ss_dssp GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Confidence 77777788888899999999999999887531 111 11234555566655 667788888887776666544
No 97
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.13 E-value=2.1e-09 Score=95.48 Aligned_cols=255 Identities=12% Similarity=0.086 Sum_probs=151.6
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhh
Q 015150 67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL 146 (412)
Q Consensus 67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 146 (412)
+...+..-+-|++|.+|+.|+-+|.++.+..+...... .-.+.+-.+|-.++-+|.+|+.++++.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDq------- 239 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDR------- 239 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSS-------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCe-------
Confidence 55556666678999999999999999998876432211 112225556666666665555543221
Q ss_pred hhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHH
Q 015150 147 PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 226 (412)
Q Consensus 147 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~ 226 (412)
.-..||++++++++.+ ..++.+ -.++..+...+....+++|.+++-.+.-+...+.. .+.+++.
T Consensus 240 ---------VVAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a 303 (800)
T 3oc3_A 240 ---------TVAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK 303 (800)
T ss_dssp ---------CBCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred ---------eeeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence 2336777788887777 555544 23333333444566778887776666655332221 3666777
Q ss_pred HHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHHhChhhhhhhhHHH
Q 015150 227 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 304 (412)
Q Consensus 227 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~ 304 (412)
+...+.|.+..||..++.++..++ .++ ..+.++..+-..|.+ +-..--......|+.++..-........++|.
T Consensus 304 VL~GL~D~DDDVRAVAAetLiPIA---~p~-~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR 379 (800)
T 3oc3_A 304 LVSLLSSPDEDIKLLSAELLCHFP---ITD-SLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD 379 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHTTSC---CSS-THHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred HHhhcCCcccHHHHHHHHHhhhhc---chh-hHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence 777777877888888777776666 111 122233333333322 21222233344455555432211112478899
Q ss_pred HHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHH-hhcCCCCchHHHHHHHHHH
Q 015150 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI-NASKDRVPNIKFNVAKVLQ 364 (412)
Q Consensus 305 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~-~~l~d~~~~vR~~~~~~l~ 364 (412)
+..++.++-..||.+++.++..+. . ..++..+. +.+-+++++|+..+.++..
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL----~----~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLS----E----ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCC----C----HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHH----h----hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999999999999988776 1 23333332 3345788888888887774
No 98
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.13 E-value=1.6e-09 Score=85.24 Aligned_cols=184 Identities=17% Similarity=0.177 Sum_probs=152.3
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch---hhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCC-C
Q 015150 26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-P 101 (412)
Q Consensus 26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~---~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~-~ 101 (412)
+..+..+.+++.|+++.++..+..+++.+.+..++. .....++|.+..+..+++.+|-..+++++..+....+-. .
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 346778888899999999999999999999987552 345668999999999999999999999999998765532 2
Q ss_pred cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHH
Q 015150 102 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 181 (412)
Q Consensus 102 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 181 (412)
....+...+...++++++-.+..+.+.++.+ +.... ...+...+.+++.+.+.+++.++..++.+++..-++....
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~---~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~ 187 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLED---SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL 187 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccccc---hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence 3356788889999999999999999999987 32221 2346778888888999999999999999999887766666
Q ss_pred HhhHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150 182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 213 (412)
Q Consensus 182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~ 213 (412)
+.++.-+..+++.+++.++..++.++..+...
T Consensus 188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 188 TLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 77888888999999999999999999998766
No 99
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.06 E-value=2e-07 Score=95.39 Aligned_cols=402 Identities=12% Similarity=0.039 Sum_probs=225.7
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc-----hhh-----------hh
Q 015150 2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-----QDC-----------VA 65 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~-----~~~-----------~~ 65 (412)
+.||.+++.++..+++...+ .-|+.+++.+..+++. ++..+..++.+|..+.+.... ... .+
T Consensus 110 ~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~ 187 (1204)
T 3a6p_A 110 NHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNME 187 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHH
Confidence 56899999999999987544 3478888888887766 445678888888888654211 001 11
Q ss_pred hhHHHHHhhccC-------------------CChHHHHHHHHHHHHHHHHhCCCCc---ccchHHHHHHhcCCChHHHHH
Q 015150 66 HILPVIVNFSQD-------------------KSWRVRYMVANQLYELCEAVGPEPT---RSDVVPAYVRLLRDNEAEVRI 123 (412)
Q Consensus 66 ~l~~~l~~l~~d-------------------~~~~vR~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~ 123 (412)
.+++.+.+.+++ ++..++..+++++.....-.+.... ...+++.+..++.+ +.+|.
T Consensus 188 ~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~ 265 (1204)
T 3a6p_A 188 RIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQL 265 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHH
Confidence 344444444332 2344666677766654432221111 12488888888776 57899
Q ss_pred HHHHHHHHHHHhhC-HHHHHHhhhhh--------HHHhc--------cCCcHHHHHHHHHHHHhcCcccC----------
Q 015150 124 AAAGKVTKICRILN-PELAIQHILPC--------VKELS--------SDSSQHVRSALATVIMGMAPILG---------- 176 (412)
Q Consensus 124 ~a~~~l~~l~~~~~-~~~~~~~~~~~--------l~~~~--------~d~~~~vr~~~~~~l~~l~~~~~---------- 176 (412)
.|+++|..+..... ++... .++.. +.... .+.+..++...++.+..++..+-
T Consensus 266 ~A~ecL~~i~s~~~~~~~~~-~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~ 344 (1204)
T 3a6p_A 266 GAAECLLIAVSRKGKLEDRK-PLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVE 344 (1204)
T ss_dssp HHHHHHHHHHTCCSCHHHHG-GGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHhCCCChhhHH-HHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999886433 22211 12221 12221 22345666666666655542211
Q ss_pred hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc--h-hh---HHhhHHHHHHHHh------cCC----------
Q 015150 177 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--I-DL---LSQSLLPAIVELA------EDR---------- 234 (412)
Q Consensus 177 ~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~--~-~~---~~~~~~~~l~~~~------~d~---------- 234 (412)
.......+++.+..+..+++..+-..+...+..+.+... . +. +...+++.+...+ .+.
T Consensus 345 ~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~ 424 (1204)
T 3a6p_A 345 TPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRF 424 (1204)
T ss_dssp CCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhc
Confidence 111235778888888888888887777776666655432 1 11 2233334431100 100
Q ss_pred -----------CchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC-------------------------chhHHH
Q 015150 235 -----------HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD-------------------------KVYSIR 278 (412)
Q Consensus 235 -----------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-------------------------~~~~vr 278 (412)
.+..|......+..++...+. ...+.+.+.+...+.+ +.+...
T Consensus 425 D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~-~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 503 (1204)
T 3a6p_A 425 DFDSDEDFNAFFNSSRAQQGEVMRLACRLDPK-TSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQW 503 (1204)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHH
Confidence 123466666666666554432 2233344444333322 223344
Q ss_pred HHHHHHHHHHHHHh---C-hhhhhhhhHHHHHhhh---cCCchHHHHHHHHHHHHhccccchh-HHHHhhHHHHHhhcCC
Q 015150 279 DAAANNVKRLAEEF---G-PDWAMQHIVPQVLEMI---NNPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKD 350 (412)
Q Consensus 279 ~~a~~~l~~l~~~~---~-~~~~~~~~l~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~~l~d 350 (412)
++....+..+.+.+ . .+.....+++.++..+ +..++.+|...+.+++.+...+... .+...++..++..+.+
T Consensus 504 ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~ 583 (1204)
T 3a6p_A 504 EAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTF 583 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhcc
Confidence 44444455444433 1 1111112455555542 3346789999999999988776643 3566677777766665
Q ss_pred ------------CCchHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcCCC---CccHHHHHHHHHHHhHHhh
Q 015150 351 ------------RVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDP---DVDVRFFATQALQSKDQVM 409 (412)
Q Consensus 351 ------------~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~---~~~vr~~a~~al~~~~~~~ 409 (412)
.+.++|..++.++..++...++. .+.+.+...+..++... +..=+....+|+..++..+
T Consensus 584 ~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~ 659 (1204)
T 3a6p_A 584 ETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQF 659 (1204)
T ss_dssp CTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGG
T ss_pred CCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccC
Confidence 23479999999999998876653 23455566555544322 2445566667777765443
No 100
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.05 E-value=3.1e-11 Score=90.42 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCccc
Q 015150 25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS 104 (412)
Q Consensus 25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~ 104 (412)
...-.+.+..+++|+++.+|..|+..++.+.. . . .+.+..+++|+++.||..++.+|+.+.. .
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~ 72 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD----E----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------E 72 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS----T----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------H
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------H
Confidence 33445566667788888888777777664432 1 1 3666777778888888888888877652 3
Q ss_pred chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhc
Q 015150 105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGM 171 (412)
Q Consensus 105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l 171 (412)
..++.+..+++|+++.||..++.+|+.+.. ...++.+..+++|+++.||..++.+++.+
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 456777777778888888888888877652 23456677777777778888777776643
No 101
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.05 E-value=5.6e-07 Score=92.14 Aligned_cols=404 Identities=13% Similarity=0.043 Sum_probs=229.4
Q ss_pred chhHHHHHHHHHHHHHH----hhh---hhhHHHHHHHHHHhcc---CCchHHHHHHHHhHHHHhhccCchhhhhhhHHHH
Q 015150 2 PMVRRSAATNLGKFAAT----VEA---AHLKSEIMSIFEELTQ---DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVI 71 (412)
Q Consensus 2 ~~vR~~a~~~l~~~~~~----~~~---~~~~~~l~~~l~~l~~---~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l 71 (412)
+.||..++..|.+.++. ++. ..+.+.+++.+..... ++...+|...+.++..++..--++ .++.+++.+
T Consensus 61 ~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-~Wp~ll~~L 139 (1204)
T 3a6p_A 61 AIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-HWPDMLIEL 139 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-cchHHHHHH
Confidence 57899999999888764 222 2345556666544322 145778999999999999874343 467888888
Q ss_pred HhhccCCChHHHHHHHHHHHHHHHHhCC-CCc---------------ccchHHHHHHhcCC-------------------
Q 015150 72 VNFSQDKSWRVRYMVANQLYELCEAVGP-EPT---------------RSDVVPAYVRLLRD------------------- 116 (412)
Q Consensus 72 ~~l~~d~~~~vR~~~~~~l~~l~~~~~~-~~~---------------~~~l~~~l~~~l~d------------------- 116 (412)
.++++. +...+..++..|..+.+.... +.. .+++++.+...+.+
T Consensus 140 ~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~ 218 (1204)
T 3a6p_A 140 DTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQ 218 (1204)
T ss_dssp HHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhh
Confidence 888765 556788899999988765321 110 11345555544433
Q ss_pred ChHHHHHHHHHHHHHHHHhhCHHHHHH---hhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh-hHH---HHhh----H
Q 015150 117 NEAEVRIAAAGKVTKICRILNPELAIQ---HILPCVKELSSDSSQHVRSALATVIMGMAPILGK-DAT---IEQL----L 185 (412)
Q Consensus 117 ~~~~vr~~a~~~l~~l~~~~~~~~~~~---~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-~~~---~~~l----~ 185 (412)
++..++..+++++..+....+...+.+ .+++.+..++.+ +.+|..+++++..++..-.+ +.. ...+ +
T Consensus 219 ~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l 296 (1204)
T 3a6p_A 219 ANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAM 296 (1204)
T ss_dssp HHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHH
Confidence 234577778888877766666554433 277777776664 67899999999998864322 111 1111 1
Q ss_pred HHHHHhh--------cccChHHHHHHHHHHHHHHHhhc----------hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhh
Q 015150 186 PIFLSLL--------KDEFPDVRLNIISKLDQVNQVIG----------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 247 (412)
Q Consensus 186 ~~l~~~l--------~d~~~~vr~~~~~~l~~i~~~~~----------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~ 247 (412)
..+.... .|++.++++...+.+..++..+. .......+++.+..+..+++..+-..++..+.
T Consensus 297 ~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~ 376 (1204)
T 3a6p_A 297 HYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWG 376 (1204)
T ss_dssp HHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHH
Confidence 1222222 23345666665555555442211 11123577888999988888777777777776
Q ss_pred HHHhhhC--h-hh---HHHHHHHHHHH---Hhc---Cc--------------h-------hHHHHHHHHHHHHHHHHhCh
Q 015150 248 LLASQLG--V-GF---FDDKLGALCMQ---WLK---DK--------------V-------YSIRDAAANNVKRLAEEFGP 294 (412)
Q Consensus 248 ~l~~~~~--~-~~---~~~~l~~~l~~---~l~---d~--------------~-------~~vr~~a~~~l~~l~~~~~~ 294 (412)
.+.+... . +. +...+++.+.. -+. +. + .+.|......+..++... +
T Consensus 377 ~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~-p 455 (1204)
T 3a6p_A 377 ALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLD-P 455 (1204)
T ss_dssp HHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC-H
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcC-H
Confidence 6655432 1 11 33445555522 111 00 0 123444444444444332 2
Q ss_pred hhhhhhhHHHHHhhhc-------------------------CCchHHHHHHHHHHHHhccccch----hHHHHhhHHHHH
Q 015150 295 DWAMQHIVPQVLEMIN-------------------------NPHYLYRMTILQAISLLAPVMGS----EITCSQLLPVVI 345 (412)
Q Consensus 295 ~~~~~~~l~~l~~~~~-------------------------~~~~~~r~~~~~~l~~l~~~~~~----~~~~~~il~~l~ 345 (412)
......+.+.+...+. ++.|...++....+..+...+.. +.....+.|.++
T Consensus 456 ~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll 535 (1204)
T 3a6p_A 456 KTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELL 535 (1204)
T ss_dssp HHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 2122222233322111 23466677766666666544311 111112344444
Q ss_pred hhc---CCCCchHHHHHHHHHHHHhhhhchH-HHHhhHHHHHHhhcCC------------CCccHHHHHHHHHHHhHHhh
Q 015150 346 NAS---KDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSED------------PDVDVRFFATQALQSKDQVM 409 (412)
Q Consensus 346 ~~l---~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d------------~~~~vr~~a~~al~~~~~~~ 409 (412)
..+ +..+|.+|...+.+++.+...+... .+...++..+...+.| .+.+||..|+.++..++..+
T Consensus 536 ~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~ 615 (1204)
T 3a6p_A 536 QMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDY 615 (1204)
T ss_dssp HHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 432 3457889999999998887765432 2334444544443334 24589999999999998876
Q ss_pred h
Q 015150 410 M 410 (412)
Q Consensus 410 ~ 410 (412)
+
T Consensus 616 ~ 616 (1204)
T 3a6p_A 616 P 616 (1204)
T ss_dssp H
T ss_pred h
Confidence 4
No 102
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.86 E-value=7.4e-08 Score=76.75 Aligned_cols=139 Identities=16% Similarity=0.123 Sum_probs=103.2
Q ss_pred hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHH-hcCCChHHHHHHHHHHHHHHHHhhCHHHHH
Q 015150 64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR-LLRDNEAEVRIAAAGKVTKICRILNPELAI 142 (412)
Q Consensus 64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 142 (412)
...+++++..+.+|+...||..++..|+.. . ...++++.+.. +..|+.+.||..+..+++.++...+++
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 456888888888888889998888877766 2 12668888887 778888999998888888888644443
Q ss_pred HhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150 143 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 213 (412)
Q Consensus 143 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~ 213 (412)
..++.+...+.|++..||+.+.+..-..+.........+.++|.+..+..|++..||++...+|..+.+.
T Consensus 139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 2567777888888999998888775332222112223456788888888888888888888888887765
No 103
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.75 E-value=1.2e-06 Score=86.77 Aligned_cols=347 Identities=10% Similarity=0.037 Sum_probs=199.8
Q ss_pred hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccC---c---hhhhhhhHHHHHhhcc-CCChHHHHHHHHHHHH--
Q 015150 22 AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE---P---QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYE-- 92 (412)
Q Consensus 22 ~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~---~---~~~~~~l~~~l~~l~~-d~~~~vR~~~~~~l~~-- 92 (412)
+...+.+.+.+..+..|++.....+|+++++.+..... . +..+..+.|++...+. +-+++....=..++.-
T Consensus 503 ~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~ 582 (997)
T 1vsy_5 503 ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLP 582 (997)
T ss_dssp CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 45567788888999888887777788899998887532 2 3455668888777666 2222111111111111
Q ss_pred ----------HHHHh---------CCCC-----------------------cccchHHHHHHhcCCChHHHHHHHHHHHH
Q 015150 93 ----------LCEAV---------GPEP-----------------------TRSDVVPAYVRLLRDNEAEVRIAAAGKVT 130 (412)
Q Consensus 93 ----------l~~~~---------~~~~-----------------------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 130 (412)
+.+.+ +.+. ....++..+. ++++...||+.....|.
T Consensus 583 ~~~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~ 660 (997)
T 1vsy_5 583 AVVDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLT 660 (997)
T ss_dssp HHSCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHH
T ss_pred cCCChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHH
Confidence 11111 0000 0122333333 67788999999999998
Q ss_pred HHHHhhC------H----------------------HHHHHhhhhhHHHh---cc---C--C-----cHH--HHHHHHHH
Q 015150 131 KICRILN------P----------------------ELAIQHILPCVKEL---SS---D--S-----SQH--VRSALATV 167 (412)
Q Consensus 131 ~l~~~~~------~----------------------~~~~~~~~~~l~~~---~~---d--~-----~~~--vr~~~~~~ 167 (412)
.+....- . ..+.+.+...+.++ -. + + +.. .-.+++..
T Consensus 661 ~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~w 740 (997)
T 1vsy_5 661 TLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYW 740 (997)
T ss_dssp HHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHH
T ss_pred HHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHH
Confidence 7765431 0 11111111111111 00 1 0 111 12233333
Q ss_pred HHhcCcccChhH---HH-HhhHHHHHHhhcccCh-HHHHH-HHHHHHHHHHhhchhhHHhhHHHHHHHHhc-CCCchHHH
Q 015150 168 IMGMAPILGKDA---TI-EQLLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRL 240 (412)
Q Consensus 168 l~~l~~~~~~~~---~~-~~l~~~l~~~l~d~~~-~vr~~-~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~-d~~~~vr~ 240 (412)
+........... +. ..++|.+.++.++++. ++... +...+..+....-.....+.++..+.+..+ +++| .|.
T Consensus 741 l~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~ 819 (997)
T 1vsy_5 741 IKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTK 819 (997)
T ss_dssp HHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHH
T ss_pred HHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHH
Confidence 333322111110 11 1255555555555443 55544 444455554333233333556666666565 6899 999
Q ss_pred HHHHHhhHHHhh----hChhhHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcC----
Q 015150 241 AIIEYIPLLASQ----LGVGFFDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN---- 311 (412)
Q Consensus 241 ~~~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~---- 311 (412)
.++..+..+.-. ++.+ -...+...+..+|.|+. .+||+.|..+|+.++...+.......++..+.+.+..
T Consensus 820 ~~L~~lq~~~f~n~f~l~~~-~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~ 898 (997)
T 1vsy_5 820 LQLAFIQHFLSAELLQLTEE-EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYT 898 (997)
T ss_dssp HHHHHHHHHHHHHTTTSCTT-HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSC
T ss_pred HHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccc
Confidence 998887766542 1332 23568888999999999 9999999999999997652322233455555544422
Q ss_pred --------CchHHHHHHHHHHHHhccccchh----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH
Q 015150 312 --------PHYLYRMTILQAISLLAPVMGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 373 (412)
Q Consensus 312 --------~~~~~r~~~~~~l~~l~~~~~~~----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 373 (412)
.+-..|-+++-.|+++...++-. .+.+.++..|....+|+.+ ++.++-++++.+-.+..+.
T Consensus 899 ~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D~ 971 (997)
T 1vsy_5 899 SKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRADT 971 (997)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTSTT
T ss_pred cccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccchh
Confidence 11257889999999998777644 4777888888888888765 9999999999998766554
No 104
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.61 E-value=4e-05 Score=67.61 Aligned_cols=256 Identities=15% Similarity=0.153 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHH
Q 015150 3 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRV 82 (412)
Q Consensus 3 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~v 82 (412)
..++-|++.|..+.+.++. ..+.-+..+..++.|++..+|..|++.|..+++. +..+.+..++.++++..++..
T Consensus 43 k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~E 116 (507)
T 3u0r_A 43 KEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDSAE 116 (507)
T ss_dssp HHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccchHH
Confidence 3444555555555554432 2233334444445555555555555555555543 234455555555555544444
Q ss_pred HHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH----HHHHHhhhhhHHHhccCCcH
Q 015150 83 RYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP----ELAIQHILPCVKELSSDSSQ 158 (412)
Q Consensus 83 R~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~ 158 (412)
+..+-++|-.+...-. ..-+...+.++.+ .++.+|..++.-|..-...++. .+....+...+.+.++|-+.
T Consensus 117 ~~~V~~sL~sllk~Dp----k~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 117 FNLVNNALLSIFKMDA----KGTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTG 191 (507)
T ss_dssp HHHHHHHHHHHHHHCH----HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCH
T ss_pred HHHHHHHHHHHHhcCh----HHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccH
Confidence 4444444444433110 0111111222222 2345565555555333222222 23344455555666655443
Q ss_pred HHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhc-----c-cChHHHHHHHHHHHHHHHhhch----hhHH----hhHH
Q 015150 159 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-----D-EFPDVRLNIISKLDQVNQVIGI----DLLS----QSLL 224 (412)
Q Consensus 159 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d-~~~~vr~~~~~~l~~i~~~~~~----~~~~----~~~~ 224 (412)
.-=......+..+- .++.....+.+++.+..... + .+++.-...+.++......+.. ..+. +.++
T Consensus 192 ~EF~L~m~lL~~lk-l~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIl 270 (507)
T 3u0r_A 192 EEFVLFMKILSGLK-SLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVL 270 (507)
T ss_dssp HHHHHHHHHHHTSG-GGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhcc-cccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhc
Confidence 22233334443322 12222223566666665422 1 2455555555555555544432 2222 3334
Q ss_pred HHHHHHhcC-CCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHh
Q 015150 225 PAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 270 (412)
Q Consensus 225 ~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 270 (412)
|.+..+-.. .....+...++.+..++...|........++.+...|
T Consensus 271 P~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L 317 (507)
T 3u0r_A 271 PNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKL 317 (507)
T ss_dssp GGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred cchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence 433322221 1223677888899999988883333333444444433
No 105
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.55 E-value=0.0001 Score=68.11 Aligned_cols=304 Identities=16% Similarity=0.193 Sum_probs=181.3
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCCCC--
Q 015150 25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP-- 101 (412)
Q Consensus 25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~~~-- 101 (412)
.+.+-.+..++.+..-.+=|+.|+..|..+++..+.+....-+-+++..+-+| .|..+-+.+++.|..+....+.+.
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~ 99 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVE 99 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC------
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccccc
Confidence 33344444555555566668888888888887765442222233333334444 455666666777655543211100
Q ss_pred -------------------cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHH---HH--HhhhhhHHHhccCCc
Q 015150 102 -------------------TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AI--QHILPCVKELSSDSS 157 (412)
Q Consensus 102 -------------------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~--~~~~~~l~~~~~d~~ 157 (412)
..++-++.+..+++..+..+|..++++|..++..-+... +. ..-++.+..+++|+.
T Consensus 100 ~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r 179 (651)
T 3grl_A 100 ENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179 (651)
T ss_dssp --------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS
T ss_pred ccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch
Confidence 023568889999999999999999999999998765531 22 246788899999999
Q ss_pred HHHHHHHHHHHHhcCcccC---hhHHHHhhHHHHHHhhcccCh----HHHHHHHHHHHHHHHhhc--hhhH-HhhHHHHH
Q 015150 158 QHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFP----DVRLNIISKLDQVNQVIG--IDLL-SQSLLPAI 227 (412)
Q Consensus 158 ~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~----~vr~~~~~~l~~i~~~~~--~~~~-~~~~~~~l 227 (412)
..+|..++..+..+...-. +-...+..++.+.+++..+.. .|...++..+..+.+.-. ...+ ....+|.+
T Consensus 180 E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L 259 (651)
T 3grl_A 180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRM 259 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGG
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHH
Confidence 9999999999998875321 112224566777777776543 676777777777776532 1112 22345555
Q ss_pred HHHhcC----CCchHHH--H---HHHHhhHHHhhhCh---------hhHHHHHHHHHHHHhcCc--hhHHHHHHHHHHHH
Q 015150 228 VELAED----RHWRVRL--A---IIEYIPLLASQLGV---------GFFDDKLGALCMQWLKDK--VYSIRDAAANNVKR 287 (412)
Q Consensus 228 ~~~~~d----~~~~vr~--~---~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~ 287 (412)
..+++. ..|.-+. . ++..+..+...-+. ..+...+++.+++++..+ ...++..|+.+++.
T Consensus 260 ~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~ 339 (651)
T 3grl_A 260 KPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSE 339 (651)
T ss_dssp GGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred HHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 555542 2354222 1 22233333222121 112223556666665544 56799999999999
Q ss_pred HHHHhCh--hhhh----------hhhHHHHHhhhcCC-chHHHHHHHHHHHHhc
Q 015150 288 LAEEFGP--DWAM----------QHIVPQVLEMINNP-HYLYRMTILQAISLLA 328 (412)
Q Consensus 288 l~~~~~~--~~~~----------~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~ 328 (412)
++..... +.+. ..++..++.+.++. ...+|.+++.++..+.
T Consensus 340 ~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 340 VIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 8864321 2221 12344445555543 4889999999998775
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.38 E-value=0.00028 Score=62.35 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhccccchhHH----HHhhHHHHHhhcC-CCCchHHHHHHHHHHHHhhhhchH----HHHhhHHHHHHhh
Q 015150 316 YRMTILQAISLLAPVMGSEIT----CSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVEL 386 (412)
Q Consensus 316 ~r~~~~~~l~~l~~~~~~~~~----~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~l 386 (412)
...++-.++..++...+...| ..+++|.+-.+-. ++.+..+...++++..++...+.. ...+.+...|...
T Consensus 241 lI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~y 320 (507)
T 3u0r_A 241 LLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEY 320 (507)
T ss_dssp HHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHH
Confidence 334444444444544444334 4455553332222 122347889999999999888732 2334444444443
No 107
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.37 E-value=0.00013 Score=67.43 Aligned_cols=288 Identities=12% Similarity=0.117 Sum_probs=169.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccC-CchHHHHHHHHhHHHHhhccCchh--------------------
Q 015150 4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEPQD-------------------- 62 (412)
Q Consensus 4 vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~i~~~~~~~~-------------------- 62 (412)
=|++|+..|..+++.++.......+-+++..+-+| ++.++-+.+++.|..+...-..+.
T Consensus 38 DRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f 117 (651)
T 3grl_A 38 DRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIF 117 (651)
T ss_dssp HHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHH
Confidence 48999999999988766433222233444444444 244555667777766554322110
Q ss_pred -hhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC-----cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh
Q 015150 63 -CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 136 (412)
Q Consensus 63 -~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 136 (412)
....-++.+..+++..+..+|..+++.|..++..-+... ..+.-++.++.+++|....+|..++..|..+.+.-
T Consensus 118 ~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n 197 (651)
T 3grl_A 118 IKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN 197 (651)
T ss_dssp HHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC
T ss_pred HcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC
Confidence 123357778889999999999999999999987544321 12346888999999999999999999999998743
Q ss_pred CHH---HHHHhhhhhHHHhccCCcH----HHHHHHHHHHHhcCccc--ChhHHH-HhhHHHHHHhhcccC----hH--HH
Q 015150 137 NPE---LAIQHILPCVKELSSDSSQ----HVRSALATVIMGMAPIL--GKDATI-EQLLPIFLSLLKDEF----PD--VR 200 (412)
Q Consensus 137 ~~~---~~~~~~~~~l~~~~~d~~~----~vr~~~~~~l~~l~~~~--~~~~~~-~~l~~~l~~~l~d~~----~~--vr 200 (412)
.+- ...+..++.+..++..+.. .|-.-+...+..+...- ....+. ...+|.+..+++.++ |. ..
T Consensus 198 ~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~ 277 (651)
T 3grl_A 198 GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKV 277 (651)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHH
Confidence 221 2234466777766654332 45455556666665432 122222 244566666665322 11 22
Q ss_pred HHHHHHHHHHHHhhch------------hhHHhhHHHHHHHHhcCC--CchHHHHHHHHhhHHHhhhCh--hhH------
Q 015150 201 LNIISKLDQVNQVIGI------------DLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGV--GFF------ 258 (412)
Q Consensus 201 ~~~~~~l~~i~~~~~~------------~~~~~~~~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~--~~~------ 258 (412)
.++...+.-+.-.+.+ ......+++.+.+++... ...+|..++.+++.+...... +.+
T Consensus 278 ~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp 357 (651)
T 3grl_A 278 TNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAP 357 (651)
T ss_dssp HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEES
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCC
Confidence 2211122222111111 112344667777776554 457888888888877654321 111
Q ss_pred ----HHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHH
Q 015150 259 ----DDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEE 291 (412)
Q Consensus 259 ----~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~ 291 (412)
.+.++..++.++++. ...+|.+|+.++..+...
T Consensus 358 ~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~ 395 (651)
T 3grl_A 358 SNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK 395 (651)
T ss_dssp SSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence 123455556666554 477999999999887743
No 108
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.36 E-value=0.00061 Score=65.59 Aligned_cols=148 Identities=9% Similarity=0.017 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch--hhhhh-hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC
Q 015150 25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAH-ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 101 (412)
Q Consensus 25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~-l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~ 101 (412)
...++|++.. ++++++..|..|+.++..++..-... ..... +.+++..++.|++..||.+++.+|.+++...+.+.
T Consensus 33 ~~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 33 EDKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HHTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 3457888876 67788899999999999998632111 12223 45567788999999999999999999987655332
Q ss_pred ----cccchHHHHHHhcCCCh---------------------HHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhc
Q 015150 102 ----TRSDVVPAYVRLLRDNE---------------------AEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELS 153 (412)
Q Consensus 102 ----~~~~l~~~l~~~l~d~~---------------------~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~ 153 (412)
....+++.+..+++... +.+-..++.+|..+++.-... ......+|.+...+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 33456666666543211 123334555666665543221 11223455555544
Q ss_pred c---CCcHHHHHHHHHHHHhcCc
Q 015150 154 S---DSSQHVRSALATVIMGMAP 173 (412)
Q Consensus 154 ~---d~~~~vr~~~~~~l~~l~~ 173 (412)
. .....++.++++++..+.+
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHT
T ss_pred HhcCCCcHHHHHHHHHHHHHHhc
Confidence 2 2346788888888887654
No 109
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.31 E-value=0.0001 Score=59.99 Aligned_cols=183 Identities=16% Similarity=0.080 Sum_probs=104.0
Q ss_pred HHHHHHHhcCCCc--hHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh-Ch--h
Q 015150 224 LPAIVELAEDRHW--RVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-GP--D 295 (412)
Q Consensus 224 ~~~l~~~~~d~~~--~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~--~ 295 (412)
+|.+.+++.++++ .++..++..+..++..-.. .......+|.+.++|++++..+++.|+.+|..+...- .. .
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555566665555 5555555555555432211 1112234577777777777777777777777766421 11 1
Q ss_pred hhhhhhHHHHHhhhc-CCchHHHHHHHHHHHHhccccch-hHHHHhhHHHHHhhcC----------------CCCchHHH
Q 015150 296 WAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASK----------------DRVPNIKF 357 (412)
Q Consensus 296 ~~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~il~~l~~~l~----------------d~~~~vR~ 357 (412)
......+|.+.+++. .+++.+++.++.+|..++..-.. ..+.+.-+|.|.+.+. ..++.|+.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~ 169 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence 112346677777776 35667777777677666543222 1233344565555431 12568999
Q ss_pred HHHHHHHHHhhhhch--HHHH--hhHHHHHHhhc------CCCCccHHHHHHHHHHHhH
Q 015150 358 NVAKVLQSLIPIVDQ--SVVE--KSIRPCLVELS------EDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 358 ~~~~~l~~l~~~~~~--~~~~--~~i~~~l~~l~------~d~~~~vr~~a~~al~~~~ 406 (412)
.+..+|..++..-.. .... ..+++.|..++ .+++...+.++..+|..+.
T Consensus 170 na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 170 NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 999999999753111 1111 23555555542 4567788899999888764
No 110
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.20 E-value=6.4e-05 Score=61.21 Aligned_cols=126 Identities=15% Similarity=0.081 Sum_probs=87.8
Q ss_pred cchHHHHHHhcCCChH--HHHHHHHHHHHHHHHhhCH---HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc--C
Q 015150 104 SDVVPAYVRLLRDNEA--EVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL--G 176 (412)
Q Consensus 104 ~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~ 176 (412)
.-.+|.+.+++.++++ .++..|+..+..++..-++ .......+|.+.+++..+++.++..++.++..++..- .
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3457888898887776 8888888888887754322 2334457899999999999999999999999997521 1
Q ss_pred hhH-HHHhhHHHHHHhhcc-cChHHHHHHHHHHHHHHHhhc-hhhHHhhHHHHHHH
Q 015150 177 KDA-TIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVE 229 (412)
Q Consensus 177 ~~~-~~~~l~~~l~~~l~d-~~~~vr~~~~~~l~~i~~~~~-~~~~~~~~~~~l~~ 229 (412)
+.. ....-+|.+.+++.+ .+.+++..++.+|..+...-. ...+....+|.+.+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ 142 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTE 142 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHH
Confidence 111 224678999999974 688999999888887764321 22222334555544
No 111
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.08 E-value=0.0017 Score=62.49 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=92.3
Q ss_pred hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCC--CcccchH-HHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH-
Q 015150 64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRSDVV-PAYVRLLRDNEAEVRIAAAGKVTKICRILNPE- 139 (412)
Q Consensus 64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~-~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~- 139 (412)
.+.++|++.. ++++++..|..++.+|+.++..-... .....++ +.+..++.|++.+||..|+.+|..++..-+.+
T Consensus 33 ~~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 33 EDKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HHTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 3468887765 67889999999999999998521111 1223444 55677899999999999999999998776654
Q ss_pred ---HHHHhhhhhHHHhccCC--------------c-------HHHHHHHHHHHHhcCcccCh---hHHHHhhHHHHHHhh
Q 015150 140 ---LAIQHILPCVKELSSDS--------------S-------QHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLL 192 (412)
Q Consensus 140 ---~~~~~~~~~l~~~~~d~--------------~-------~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l 192 (412)
.+...+++.+..++... . +.+...++..+..++..-.. .......+|.+...+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 23344666665543211 1 11222334444444432211 111234556666655
Q ss_pred cc---cChHHHHHHHHHHHHHHHh
Q 015150 193 KD---EFPDVRLNIISKLDQVNQV 213 (412)
Q Consensus 193 ~d---~~~~vr~~~~~~l~~i~~~ 213 (412)
.+ ...+++..++.+|..+...
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred HhcCCCcHHHHHHHHHHHHHHhcc
Confidence 33 2367999999998887654
No 112
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.96 E-value=0.0015 Score=65.03 Aligned_cols=379 Identities=7% Similarity=-0.046 Sum_probs=198.9
Q ss_pred hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHh----hccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHh
Q 015150 22 AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALG----KLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 97 (412)
Q Consensus 22 ~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~----~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~ 97 (412)
+.++..+...+.+- ++.++.-+..-+..+..+. +.++ +...+.+.+.+..+..|.+..-...+++.++-+....
T Consensus 462 ~~~~~~l~~~l~qe-~~~~~~F~~~~v~l~k~lf~l~~rn~~-~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gs 539 (997)
T 1vsy_5 462 REFLRDVTMNLVQD-NETRGVFSSGNVSFFSLVILLISSGFC-ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGS 539 (997)
T ss_dssp HHHHHHHHHHHHHT-TTTTCCCCHHHHHHHHHHHHHHTTTTC-CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHhh-ccccCccccchHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc
Confidence 34555555554321 1222222333344444444 3344 3467889999999999988888999999998887643
Q ss_pred CCC------CcccchHHHHHHhcC-CChHHHHHHHHHHHHHHHHhhCHH------------------------------H
Q 015150 98 GPE------PTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE------------------------------L 140 (412)
Q Consensus 98 ~~~------~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~------------------------------~ 140 (412)
..- ..++.+.|.+...+. +-.++....-..++..+....++. .
T Consensus 540 K~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ 619 (997)
T 1vsy_5 540 KFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRESDAATHQTSKIY 619 (997)
T ss_dssp SSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 321 134567888888877 455444444433333332221110 0
Q ss_pred H--------------HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC----------------------------hh
Q 015150 141 A--------------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILG----------------------------KD 178 (412)
Q Consensus 141 ~--------------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----------------------------~~ 178 (412)
. ...++..+. +.++...||..+...+..+....- .+
T Consensus 620 ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 697 (997)
T 1vsy_5 620 MLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPE 697 (997)
T ss_dssp HHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCH
T ss_pred HHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcc
Confidence 0 011122222 577889999999988876543220 01
Q ss_pred HHHHhhHHHHHHhh---c---c--cChHHHHHH---HHHHH-HHHHhhchh------hHHhh-HHHHHHHHhcCCCc-hH
Q 015150 179 ATIEQLLPIFLSLL---K---D--EFPDVRLNI---ISKLD-QVNQVIGID------LLSQS-LLPAIVELAEDRHW-RV 238 (412)
Q Consensus 179 ~~~~~l~~~l~~~l---~---d--~~~~vr~~~---~~~l~-~i~~~~~~~------~~~~~-~~~~l~~~~~d~~~-~v 238 (412)
...+.+...+.++- . + +....+... .+.+- .+...++.. .+... ++|.+..+.++++- +.
T Consensus 698 ~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL 777 (997)
T 1vsy_5 698 KVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCAL 777 (997)
T ss_dssp HHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHH
Confidence 11111211221111 0 0 010111111 11111 111111111 01112 55555555554433 22
Q ss_pred HHH-HHHHhhHHHhhhChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHh----ChhhhhhhhHHHHHhhhcCC
Q 015150 239 RLA-IIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEF----GPDWAMQHIVPQVLEMINNP 312 (412)
Q Consensus 239 r~~-~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~~l~~l~~~~~~~ 312 (412)
... +..++..++...-.....+.++..+.+..+ +++| +|..++..+..+.-.. +.+ -...+...+..++.|+
T Consensus 778 ~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~-~~~~i~~~v~~~L~D~ 855 (997)
T 1vsy_5 778 ASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE-EKNKILEFVVSNLYNE 855 (997)
T ss_dssp TTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT-HHHHTHHHHTTTTTCS
T ss_pred HhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHhcCC
Confidence 222 223333333322222233334444444444 5788 9999988887766421 222 2356888889999999
Q ss_pred c-hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCC--CC----------chHHHHHHHHHHHHhhhhch----HHH
Q 015150 313 H-YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD--RV----------PNIKFNVAKVLQSLIPIVDQ----SVV 375 (412)
Q Consensus 313 ~-~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d--~~----------~~vR~~~~~~l~~l~~~~~~----~~~ 375 (412)
. ..||+.|..+|+.+....+.......++..+.+.+.. .. ...|-+++-.|+.+...+.= +..
T Consensus 856 q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w 935 (997)
T 1vsy_5 856 QFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPW 935 (997)
T ss_dssp SCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTH
T ss_pred ccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcc
Confidence 9 9999999999999976541311223444444444422 01 13455566666666655421 335
Q ss_pred HhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 376 EKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 376 ~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
.+.++..|....+||.+ |+..+.++++.+-+
T Consensus 936 ~P~~l~~La~~~~~~~~-i~~tvk~tlseFkr 966 (997)
T 1vsy_5 936 IPKNLSNLSSWARTSGM-TGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHh
Confidence 56677777777888776 99999999988764
No 113
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.59 E-value=0.0057 Score=61.82 Aligned_cols=134 Identities=11% Similarity=0.000 Sum_probs=83.8
Q ss_pred hHHHHHHHHhcC----CCchHHHHHHHHhhHHHhhhC------hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 015150 222 SLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 291 (412)
Q Consensus 222 ~~~~~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 291 (412)
.++..+..++++ .++.+|..++-+++.++.... .....+.+...+.+.+...+.+-+..++++||.+..
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~- 469 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ- 469 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence 344555555544 456788888888887776441 112234566666666777777778888888887653
Q ss_pred hChhhhhhhhHHHHHhhhc-------CCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHH
Q 015150 292 FGPDWAMQHIVPQVLEMIN-------NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364 (412)
Q Consensus 292 ~~~~~~~~~~l~~l~~~~~-------~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~ 364 (412)
...++.+.+++. +...++|.+|+.++..+....+ +.+.+.+++.+.+ .+..+++|.+|+..|-
T Consensus 470 -------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-~~v~~il~~i~~n--~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 470 -------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-RKVQEIVLPIFLN--VAIKSELRIRSCIVFF 539 (1056)
T ss_dssp -------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-HHHHHHHHHHHHC--TTSCHHHHHHHHHHHH
T ss_pred -------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-HHHHHHHHHHhcC--CCCChHHHHHHHHHHH
Confidence 224455555542 2235789999999999874322 1233344444433 4567899999998886
Q ss_pred HH
Q 015150 365 SL 366 (412)
Q Consensus 365 ~l 366 (412)
..
T Consensus 540 ~t 541 (1056)
T 1lsh_A 540 ES 541 (1056)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 114
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.36 E-value=0.0076 Score=60.91 Aligned_cols=225 Identities=10% Similarity=0.016 Sum_probs=123.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh-CHHHHHHhhhhhHHHhccCCcH
Q 015150 80 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NPELAIQHILPCVKELSSDSSQ 158 (412)
Q Consensus 80 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~~~~d~~~ 158 (412)
...|....++|+..+. ..-+..+.+++.+.+-...+ |...+....... +.....+.+.+++..--...++
T Consensus 339 ~~~r~~~lDal~~aGT--------~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~ 409 (1056)
T 1lsh_A 339 KDYRRWILDAVPAMAT--------SEALLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRESLSYARELLNTSFIRNRP 409 (1056)
T ss_dssp HHHHHHHHHHHHHHCS--------HHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCH
T ss_pred HHHHHHHHHHhHhcCC--------HHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCH
Confidence 5567766666666543 23445555555543322222 444444332222 2222332232222221122567
Q ss_pred HHHHHHHHHHHhcCcccC------hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhc
Q 015150 159 HVRSALATVIMGMAPILG------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 232 (412)
Q Consensus 159 ~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~ 232 (412)
.+|.++.-+++.++.... .....+.+...+.+.+...+.+-+..++++|+.++.- ..++.+.+++.
T Consensus 410 ~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--------~~l~~l~~~l~ 481 (1056)
T 1lsh_A 410 ILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--------NSIKKIQRFLP 481 (1056)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--------GGHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--------hHHHHHHHhhc
Confidence 889988888888764321 1112344555555566666777778888888888642 23455555543
Q ss_pred -------CCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHHhChhhhhhhhHH
Q 015150 233 -------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL--KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 303 (412)
Q Consensus 233 -------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~ 303 (412)
+...++|.+++.+|..+.... ...+.+++++.. .+.+.++|.+|+..|-.. ... ...+.
T Consensus 482 ~~~~~~~~~~~rvr~aAi~ALr~~~~~~-----p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t---~P~----~~~l~ 549 (1056)
T 1lsh_A 482 GQGKSLDEYSTRVQAEAIMALRNIAKRD-----PRKVQEIVLPIFLNVAIKSELRIRSCIVFFES---KPS----VALVS 549 (1056)
T ss_dssp TSSSCCCCSCHHHHHHHHHTTTTGGGTC-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT---CCC----HHHHH
T ss_pred CccccccccchHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH---CcC----HHHHH
Confidence 223578999999998887532 223555556656 456788999998776321 111 12233
Q ss_pred HHHhhh-cCCchHHHHHHHHHHHHhccccch
Q 015150 304 QVLEMI-NNPHYLYRMTILQAISLLAPVMGS 333 (412)
Q Consensus 304 ~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~ 333 (412)
.+...+ .+++.+++......+..++..-.+
T Consensus 550 ~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 550 MVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 333322 346677777777777777655433
No 115
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=97.22 E-value=0.065 Score=44.07 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCccc
Q 015150 25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS 104 (412)
Q Consensus 25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~ 104 (412)
.+.+..++.+.-...+ ..+...+.-...++-.-.+. ..+.+++-++.+..|++..+|+.++..+...+.. +.....
T Consensus 14 ~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~ 89 (257)
T 3gs3_A 14 RAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLP 89 (257)
T ss_dssp HHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHH
T ss_pred HHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 4556666665555444 36655555555555443344 6788888888888899999999999999988843 233445
Q ss_pred chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcCcccChhHHHHh
Q 015150 105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKDATIEQ 183 (412)
Q Consensus 105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 183 (412)
..++.+..+++|+++.|-+.++.+...+-+ .+.+.+ .+++..- ..-.++..+ ..
T Consensus 90 ~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~-------------~~l~~i~~~~~~~~--~~~~~W~~m----------~~ 144 (257)
T 3gs3_A 90 HVINVVSMLLRDNSAQVIKRVIQACGSIYK-------------NGLQYLCSLMEPGD--SAEQAWNIL----------SL 144 (257)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH-------------HHHHHHTTSSSCCH--HHHHHHHHH----------HH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------------HHHHHHhcCCCCcc--hHHHHHHHH----------HH
Confidence 678888889999999999999988876433 333222 2221100 011111111 12
Q ss_pred hHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150 184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQV 213 (412)
Q Consensus 184 l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~ 213 (412)
+...+.+..+..+..+|..+++.+..+...
T Consensus 145 lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 145 IKAQILDMIDNENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence 333444455556777888888887777643
No 116
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.95 E-value=0.12 Score=42.58 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchH
Q 015150 276 SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNI 355 (412)
Q Consensus 276 ~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~v 355 (412)
+.+-..+....+++-.-.+ .+.+.+++.++.+..+++..+|...+..+...+.. ...+...+++.+..+++|+++.|
T Consensus 30 ~~kl~~L~qa~el~~~~dp-~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V 106 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCA-ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQV 106 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTG-GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHHHccCH-hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHH
Confidence 3455555555554432222 24566666666666666677777777776665521 22355666777777777777777
Q ss_pred HHHHHHHHHHHhhhh-------ch-----HH---HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150 356 KFNVAKVLQSLIPIV-------DQ-----SV---VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 408 (412)
Q Consensus 356 R~~~~~~l~~l~~~~-------~~-----~~---~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~ 408 (412)
.+.++.+.+.+++.. +. +. ....+...+.......+..||.++.+.+..+...
T Consensus 107 ~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 107 IKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence 777777666665432 00 11 1133444444555556788999999999988743
No 117
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.75 E-value=0.25 Score=43.13 Aligned_cols=251 Identities=18% Similarity=0.176 Sum_probs=122.6
Q ss_pred chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhh
Q 015150 105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL 184 (412)
Q Consensus 105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 184 (412)
.++..+.+.-...+ ..|-..+.-+..+.-+-.+ .....++|.+..+..|++..||..++..+.+.+.. +.......
T Consensus 26 ~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~ 101 (386)
T 3o2t_A 26 RVVDLLNQAALITN-DSKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKL 101 (386)
T ss_dssp HHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHH
T ss_pred HHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 34444443333232 2344444444443333222 23345556666666666666666666666655431 12223455
Q ss_pred HHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCc-hHHHHHHHHhhHHHhhhChhhHHHHHH
Q 015150 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGFFDDKLG 263 (412)
Q Consensus 185 ~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~ 263 (412)
++.+..+++|+++.|.+.++.+.+.+-+. ++..+. ++++. ..-. ..+.. ...+.
T Consensus 102 l~~L~~LL~d~d~~V~K~~I~~~tslYpl---------~f~~i~---~~~~~~~~~e---~~W~~----------m~~lK 156 (386)
T 3o2t_A 102 IANLNMLLRDENVNVVKKAILTMTQLYKV---------ALQWMV---KSRVISELQE---ACWDM----------VSAMA 156 (386)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHH---------HHHHHH---HC-CCCHHHH---HHHHH----------HHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHH---------HHHHHh---cCCCcchhHH---HHHHH----------HHHHH
Confidence 55566666666666666666555544211 111111 11110 0000 01111 12233
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHhChh------------h--------------------hhhhhHHHHHhhhcC
Q 015150 264 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD------------W--------------------AMQHIVPQVLEMINN 311 (412)
Q Consensus 264 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------------~--------------------~~~~~l~~l~~~~~~ 311 (412)
..++..+...+..||..+++.+..++...... . -...++..++..+.+
T Consensus 157 ~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~ 236 (386)
T 3o2t_A 157 GDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVH 236 (386)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcc
Confidence 44555667778889999999888887544210 0 012366667776665
Q ss_pred C--chHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCC--------CchHHHHHHHHHHHHhhhhchHHHHhhHHH
Q 015150 312 P--HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDR--------VPNIKFNVAKVLQSLIPIVDQSVVEKSIRP 381 (412)
Q Consensus 312 ~--~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~--------~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~ 381 (412)
+ +...-.+++.+++.++..=+ .+...+++.+..+-... ...||+..--.|..+.+.-....+...|..
T Consensus 237 ~~iss~~l~a~lnsLa~Iak~RP--~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~~~I~~ 314 (386)
T 3o2t_A 237 PAISSINLTTALGSLANIARQRP--MFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITT 314 (386)
T ss_dssp --CCHHHHHHHHHHHHHHHHHSG--GGHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHH
Confidence 3 23344566666666654221 36777888777653211 122444444455555443333345566666
Q ss_pred HHHhh
Q 015150 382 CLVEL 386 (412)
Q Consensus 382 ~l~~l 386 (412)
.|..+
T Consensus 315 ~L~~L 319 (386)
T 3o2t_A 315 LLVDL 319 (386)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 66554
No 118
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.08 E-value=0.66 Score=40.56 Aligned_cols=104 Identities=19% Similarity=0.259 Sum_probs=72.8
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 015150 26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD 105 (412)
Q Consensus 26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 105 (412)
+.+..++.+.-...+ ..+...+.-...++-+-.+ .....+++.++++..|++..+|+.++..|++.+.. .......
T Consensus 25 ~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~ 100 (386)
T 3o2t_A 25 ERVVDLLNQAALITN-DSKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLK 100 (386)
T ss_dssp HHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHH
T ss_pred HHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 445555544433222 2455455555554443333 36778999999999999999999999999988863 2223466
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKIC 133 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 133 (412)
+++.+..+++|+++.|-+.++.+...+-
T Consensus 101 ~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 101 LIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 7888888999999999999998887653
No 119
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.80 E-value=0.36 Score=37.63 Aligned_cols=111 Identities=10% Similarity=0.055 Sum_probs=71.1
Q ss_pred CchHHHHHHHHhhHHHhhh--ChhhHHHHHHHHHHHHhcC---chhHHHHHHHHHHHHHHHHhCh--hhhhhhhHHHHHh
Q 015150 235 HWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLKD---KVYSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLE 307 (412)
Q Consensus 235 ~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~ 307 (412)
++..-...+.....+...- .-+.+..+++|.++.++-. ....+|+.|+..++.++..++. ..+...+...+.+
T Consensus 59 ~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k 138 (196)
T 4atg_A 59 EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKG 138 (196)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHH
Confidence 3443333444444444322 2345667788888877521 1127999999999999999876 3445667777777
Q ss_pred hhcCCc--hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcC
Q 015150 308 MINNPH--YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK 349 (412)
Q Consensus 308 ~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~ 349 (412)
.+.|++ ...+-.|+..+..+ |.+.+..-++|.+-.+.+
T Consensus 139 ~l~dp~~~l~t~YGAi~GL~~l----G~~~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 139 VWMDPNRSEDSQYGALYCLSIL----SKNVVNTVIREHAEEYKR 178 (196)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHH----CHHHHHTHHHHHHHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHHHh----HHHHHHHhhhcCHHHHHH
Confidence 777754 66677777777765 455555566677766554
No 120
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.66 E-value=0.86 Score=38.66 Aligned_cols=208 Identities=12% Similarity=0.125 Sum_probs=128.2
Q ss_pred HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh------hH--HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhh
Q 015150 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID------LL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 252 (412)
Q Consensus 181 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~------~~--~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 252 (412)
...++..+...+..=+.+.|+.+...+..+.+.-..+ -+ .+.++..+....++++...-.+. .+-..++.
T Consensus 76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~--mLRecir~ 153 (341)
T 1upk_A 76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECIRH 153 (341)
T ss_dssp HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHHTS
T ss_pred HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHH--HHHHHHHh
Confidence 4566777777777777788888777777665432110 00 24556666666665553322221 11111110
Q ss_pred --hChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---hhhh---hhhhHHHHHhhhcCCchHHHHHHHHHH
Q 015150 253 --LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWA---MQHIVPQVLEMINNPHYLYRMTILQAI 324 (412)
Q Consensus 253 --~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~---~~~~l~~l~~~~~~~~~~~r~~~~~~l 324 (412)
+....+.....--+.++...++-+|-.-|+.++..+..... .+++ .+.++....+++.++++.+|..++..|
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLL 233 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL 233 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 00000111111235577888999999999999988875421 1222 235667777889999999999999999
Q ss_pred HHhccccchhH------HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh--chH------HHHhhHHHHHHhhcCCC
Q 015150 325 SLLAPVMGSEI------TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV--DQS------VVEKSIRPCLVELSEDP 390 (412)
Q Consensus 325 ~~l~~~~~~~~------~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~--~~~------~~~~~i~~~l~~l~~d~ 390 (412)
|.+..--.... -...-+..+..+|+|++.+++..|..++..+...= .++ .-.+.++..+.....|+
T Consensus 234 gelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~ 313 (341)
T 1upk_A 234 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR 313 (341)
T ss_dssp HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred HHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99863222211 13346778889999999999999999888775421 111 12357888888888877
No 121
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=95.46 E-value=0.35 Score=38.85 Aligned_cols=131 Identities=6% Similarity=-0.026 Sum_probs=91.2
Q ss_pred HHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHHhCCCCcccchHH
Q 015150 30 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVP 108 (412)
Q Consensus 30 ~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~ 108 (412)
.++..+..++.-+.|..|+..++.......+ .-++.+..++. ..+|.+--..+.+++.+... ....+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-----~~~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-----HLTELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-----SGGGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----ChHHHHH
Confidence 5566677778888899888888776544433 33445555554 35687777666666666543 2344678
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150 109 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 174 (412)
Q Consensus 109 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 174 (412)
.+.+.+.|++..+|..|+..+....+... ...+++.+..++.|++..||.++.+.|..++..
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~~~~~~~----~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLMLKEKTN----QDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTTCGGGCC----HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 88899999999999999887643332212 234567777788999999999999999888754
No 122
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=94.94 E-value=0.32 Score=35.82 Aligned_cols=97 Identities=10% Similarity=0.048 Sum_probs=61.4
Q ss_pred hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHH
Q 015150 231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL 306 (412)
Q Consensus 231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~ 306 (412)
+.+++|..-..++..+.. ++ .-....+..+.+.++..++.+...|+..+..++++.|..+. ...++..+.
T Consensus 18 l~~~dw~~ileicD~I~~-----~~-~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~ 91 (140)
T 3ldz_A 18 NTAEDWGLILDICDKVGQ-----SR-TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVS 91 (140)
T ss_dssp SSSCCHHHHHHHHHHHTT-----ST-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHC-----CC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence 345677765555554431 11 11233566677778888888888899999999998887654 234555555
Q ss_pred hhhcCCchHHHHHHHHHHHHhccccch
Q 015150 307 EMINNPHYLYRMTILQAISLLAPVMGS 333 (412)
Q Consensus 307 ~~~~~~~~~~r~~~~~~l~~l~~~~~~ 333 (412)
.++...+..||...+..+......++.
T Consensus 92 ~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 92 NVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 555545566777777766666655443
No 123
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=94.86 E-value=1.3 Score=35.93 Aligned_cols=30 Identities=17% Similarity=-0.045 Sum_probs=15.6
Q ss_pred hHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150 184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQV 213 (412)
Q Consensus 184 l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~ 213 (412)
+.+.+...+.|++..||++...+|..++..
T Consensus 167 ~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~ 196 (232)
T 3jxy_A 167 LFWIIGQLHSSKEFFIQKAIGWVLREYAKT 196 (232)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555555555555555543
No 124
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=93.99 E-value=1.4 Score=32.74 Aligned_cols=98 Identities=8% Similarity=-0.001 Sum_probs=67.4
Q ss_pred hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHH
Q 015150 231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL 306 (412)
Q Consensus 231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~ 306 (412)
+.+++|..-..++..+..=. .-....+..+.+.+++.++.+...|+..+..++++.|..+. ...++..+.
T Consensus 24 l~~~dw~~ileicD~I~~~~------~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~ 97 (149)
T 3g2s_A 24 NKELDWASINGFCEQLNEDF------EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELI 97 (149)
T ss_dssp CSSCCHHHHHHHHHHGGGSS------SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHCCC------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence 34567776665555543211 11233566677788899999999999999999999997654 346777777
Q ss_pred hhhcC------CchHHHHHHHHHHHHhccccchh
Q 015150 307 EMINN------PHYLYRMTILQAISLLAPVMGSE 334 (412)
Q Consensus 307 ~~~~~------~~~~~r~~~~~~l~~l~~~~~~~ 334 (412)
+++.+ .+..||...+..+......++.+
T Consensus 98 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 131 (149)
T 3g2s_A 98 KVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE 131 (149)
T ss_dssp HHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 77654 35678888888888877666543
No 125
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.92 E-value=2.6 Score=35.77 Aligned_cols=186 Identities=8% Similarity=0.018 Sum_probs=118.0
Q ss_pred HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh-Chhh-----H--HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 015150 220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGF-----F--DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 291 (412)
Q Consensus 220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~-----~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 291 (412)
...++..+...+..-++..|..+...+..+.+.- |... + .+.++..++..-.+++.. ..+-.-|.++++.
T Consensus 76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diA--l~~G~mLRecir~ 153 (341)
T 1upk_A 76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIA--LNCGIMLRECIRH 153 (341)
T ss_dssp HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTH--HHHHHHHHHHHTS
T ss_pred HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhH--hHHHHHHHHHHHh
Confidence 3567777777788888888888888877776543 2110 0 144555666655544332 1122222222221
Q ss_pred h--ChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccc---hhH---HHHhhHHHHHhhcCCCCchHHHHHHHHH
Q 015150 292 F--GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEI---TCSQLLPVVINASKDRVPNIKFNVAKVL 363 (412)
Q Consensus 292 ~--~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l 363 (412)
- ..-.+....+..+.+....++..+-.-|...+..+..... .++ -++.+...+-+++.++++-+|+.+++.|
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLL 233 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL 233 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 0 0001122344566677888888888877777777654321 122 1446777788899999999999999999
Q ss_pred HHHhhhhchHHH------HhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 364 QSLIPIVDQSVV------EKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 364 ~~l~~~~~~~~~------~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
|.+...-....+ ...-+..+..++.|+.+.++..|-+.+..++.
T Consensus 234 gelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 234 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 999754322211 24567788888999999999999999988765
No 126
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=93.52 E-value=0.52 Score=35.01 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=60.0
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH----HHHhhHHHHHhhcCC------CCchHHHHHHHHHHHHhh
Q 015150 299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKD------RVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~ 368 (412)
...+..+.+.++++++.+...++..+..+.+.+|..+ ....++..+.+.+.+ ..+.||..++..+..+..
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 4566777888889999999999999999999888763 244577777877764 467899999999999998
Q ss_pred hhchH
Q 015150 369 IVDQS 373 (412)
Q Consensus 369 ~~~~~ 373 (412)
.+...
T Consensus 127 ~f~~~ 131 (149)
T 3g2s_A 127 GLPEE 131 (149)
T ss_dssp HCTTC
T ss_pred HhCCC
Confidence 77653
No 127
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=93.34 E-value=1.2 Score=33.71 Aligned_cols=97 Identities=11% Similarity=0.078 Sum_probs=62.2
Q ss_pred cCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHHh
Q 015150 232 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLE 307 (412)
Q Consensus 232 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~ 307 (412)
.+++|..-..++..+..= . .-....+..+.+.++..++.+...|+..|..++++.|..+. ...++..+..
T Consensus 29 ~~~Dw~~~leicD~I~~~-----~-~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~ 102 (163)
T 1x5b_A 29 TTEDWSLIMDICDKVGST-----P-NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRA 102 (163)
T ss_dssp SSCCHHHHHHHHHHHHHS-----S-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCC-----C-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 456777655555444321 1 11233555667778888889999999999999998887654 2456666655
Q ss_pred hhcC-CchHHHHHHHHHHHHhccccchh
Q 015150 308 MINN-PHYLYRMTILQAISLLAPVMGSE 334 (412)
Q Consensus 308 ~~~~-~~~~~r~~~~~~l~~l~~~~~~~ 334 (412)
++.. .+..||..++..+......++.+
T Consensus 103 l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 103 VIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5553 44677777777777776655543
No 128
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=93.10 E-value=1.7 Score=32.14 Aligned_cols=96 Identities=6% Similarity=0.044 Sum_probs=65.9
Q ss_pred cCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHHh
Q 015150 232 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLE 307 (412)
Q Consensus 232 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~ 307 (412)
.+++|..-..++..+..-. .| ....+..+.+.++++++.+...|+..|..++++.|..+. ...++..+..
T Consensus 15 ~~~dw~~~leicD~I~~~~--~~----~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~k 88 (148)
T 1mhq_A 15 SEQDWSAIQNFCEQVNTDP--NG----PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIK 88 (148)
T ss_dssp SSCCHHHHHHHHHHHHHSS--HH----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcCC--cc----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence 4567776555554443211 11 233555677778899999999999999999999987654 3467777777
Q ss_pred hhcC------CchHHHHHHHHHHHHhccccch
Q 015150 308 MINN------PHYLYRMTILQAISLLAPVMGS 333 (412)
Q Consensus 308 ~~~~------~~~~~r~~~~~~l~~l~~~~~~ 333 (412)
++.+ .+..||..++..+...+..++.
T Consensus 89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 89 VLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp TTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 7653 3567888888888887766654
No 129
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=92.93 E-value=1.4 Score=33.62 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=61.2
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH----HHHhhHHHHHhhcCC------CCchHHHHHHHHHHHHhh
Q 015150 299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKD------RVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~ 368 (412)
...+-.+.+.+++++..+...++..+..+.+.+|..+ ....++..+.+++.. ..+.||..++..+..+..
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4466677777888888888899999988888888653 234566667776652 357899999999999988
Q ss_pred hhchHHHHhhHHHHHHh
Q 015150 369 IVDQSVVEKSIRPCLVE 385 (412)
Q Consensus 369 ~~~~~~~~~~i~~~l~~ 385 (412)
.++...........|+.
T Consensus 129 ~f~~~~~i~~~y~~Lk~ 145 (171)
T 1juq_A 129 ALPEEAKIKDAYHMLKR 145 (171)
T ss_dssp HCTTCHHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHH
Confidence 87654333334444433
No 130
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=92.71 E-value=2.4 Score=33.89 Aligned_cols=132 Identities=8% Similarity=-0.001 Sum_probs=85.5
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhhhhhhH
Q 015150 224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIV 302 (412)
Q Consensus 224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l 302 (412)
...+..+..++.-..|..++..+....... .+.-++.+..++. ..+|.+....+.+++.++... ...+.
T Consensus 57 ~~~~~~L~~s~~~E~r~la~~~l~~~~~~~-----~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~ 126 (220)
T 2b6c_A 57 CQEIEAYYQKTEREYQYVAIDLALQNVQRF-----SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELP 126 (220)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHTGGGC-----CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHH
T ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHH
Confidence 366667777777777887777766543322 2346666666665 456777777666666666532 23355
Q ss_pred HHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh
Q 015150 303 PQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 369 (412)
Q Consensus 303 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 369 (412)
+.+.....+++.-+|..++..+ + .. ..+...+.+++.+...+.|+..=||+++.++|..++..
T Consensus 127 ~~i~~W~~s~~~w~rR~ai~~~--l-~~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 127 TIFALFYGAENFWNRRVALNLQ--L-ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HHHHHHTTCSSHHHHHHHHHTT--T-TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHH--H-HH-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 7778888888855555444432 2 22 22223456677777788999999999999999999875
No 131
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=92.66 E-value=2.3 Score=31.48 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=60.7
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH----HHHhhHHHHHhhcCC------CCchHHHHHHHHHHHHhh
Q 015150 299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKD------RVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~ 368 (412)
...+..+.+.++++++.+...++..+..+...+|..+ ....++..+.+.+.+ ..+.||..++..+..++.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566777788889999999999999999999998763 245678888887764 367899999999999998
Q ss_pred hhchH
Q 015150 369 IVDQS 373 (412)
Q Consensus 369 ~~~~~ 373 (412)
.+...
T Consensus 117 ~f~~~ 121 (148)
T 1mhq_A 117 WFPED 121 (148)
T ss_dssp HCTTC
T ss_pred HcCCC
Confidence 87654
No 132
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=92.41 E-value=3.1 Score=32.37 Aligned_cols=142 Identities=12% Similarity=0.087 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhccc------ChHHHHHHHHHHHHHHHh--hchhhHHhhHHHHHHHH
Q 015150 159 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE------FPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVEL 230 (412)
Q Consensus 159 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~------~~~vr~~~~~~l~~i~~~--~~~~~~~~~~~~~l~~~ 230 (412)
..|..+.+.+..=. | .+.++|.|..++.++ +...-...++....+..+ +..+.+...++|.+..+
T Consensus 23 ~~r~~aL~sL~~D~---g----L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 23 DMKDIAIECLEKES---G----LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp TTHHHHHHHHHHCS---S----CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---C----hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 34666666654322 1 357888888776542 233333344444444433 22355667788888776
Q ss_pred hcCC--Cc-hHHHHHHHHhhHHHhhhCh--hhHHHHHHHHHHHHhcCch--hHHHHHHHHHHHHHHHHhChhhhhhhhHH
Q 015150 231 AEDR--HW-RVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKV--YSIRDAAANNVKRLAEEFGPDWAMQHIVP 303 (412)
Q Consensus 231 ~~d~--~~-~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~l~ 303 (412)
+-.+ .+ .+|..++..++.++...|. ....+.+...+.+.+.|++ ......|+..+.. +|.+....-++|
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP 171 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIRE 171 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhc
Confidence 5221 12 7999999999999999876 4466778888888887764 4466666665544 666666666778
Q ss_pred HHHhhhcC
Q 015150 304 QVLEMINN 311 (412)
Q Consensus 304 ~l~~~~~~ 311 (412)
.+..+.++
T Consensus 172 ~l~~~~~~ 179 (196)
T 4atg_A 172 HAEEYKRT 179 (196)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHHH
Confidence 87766543
No 133
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=92.27 E-value=1.8 Score=33.02 Aligned_cols=97 Identities=7% Similarity=0.078 Sum_probs=68.4
Q ss_pred cCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHHh
Q 015150 232 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLE 307 (412)
Q Consensus 232 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~ 307 (412)
.+++|..-..++..+..=. .| ....+..+.+.++..++.+...|+..|..++++.|..+. ...++..+..
T Consensus 27 ~~~Dw~~ileicD~I~~~~--~~----~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~k 100 (171)
T 1juq_A 27 RQEDWEYIIGFCDQINKEL--EG----PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIK 100 (171)
T ss_dssp SSCCHHHHHHHHHHHHHST--TH----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcCC--cc----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence 4567776555555443211 11 233556677788899999999999999999999887654 3467777777
Q ss_pred hhcC------CchHHHHHHHHHHHHhccccchh
Q 015150 308 MINN------PHYLYRMTILQAISLLAPVMGSE 334 (412)
Q Consensus 308 ~~~~------~~~~~r~~~~~~l~~l~~~~~~~ 334 (412)
++.. .+..||..+++.+......++..
T Consensus 101 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 133 (171)
T 1juq_A 101 VVSPKYLGDRVSEKVKTKVIELLYSWTMALPEE 133 (171)
T ss_dssp HHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HhccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 7652 34789999999999988777654
No 134
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=92.20 E-value=2.5 Score=30.92 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=35.9
Q ss_pred hhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC
Q 015150 65 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN 137 (412)
Q Consensus 65 ~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 137 (412)
.+....+.+.++++++.+...++..|..++..+|. +....+++..+..+++..++.||..+...+..++..+.
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 34444455555555555555555555555554441 22222333333333334455666666666666555543
No 135
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=91.63 E-value=2.1 Score=34.43 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=65.5
Q ss_pred hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHH
Q 015150 231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL 306 (412)
Q Consensus 231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~ 306 (412)
+.+++|..=..++..+.. ...| ....+..+.+.++..++.+...|+..|..++++.|..+. ...++..+.
T Consensus 21 ~~~~dw~~ileicD~I~~--~~~~----~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~ 94 (226)
T 3zyq_A 21 LLETDWESILQICDLIRQ--GDTQ----AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELK 94 (226)
T ss_dssp CSSCCHHHHHHHHHHHHT--TSSC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhC--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHH
Confidence 345677766555555431 1112 234666777888899999999999999999999987654 245555555
Q ss_pred hhhcC-CchHHHHHHHHHHHHhccccchh
Q 015150 307 EMINN-PHYLYRMTILQAISLLAPVMGSE 334 (412)
Q Consensus 307 ~~~~~-~~~~~r~~~~~~l~~l~~~~~~~ 334 (412)
.+++. .+..||..++..+...+..+..+
T Consensus 95 ~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 95 DLLKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 55432 44678888888888777665443
No 136
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=90.52 E-value=1.4 Score=32.15 Aligned_cols=70 Identities=10% Similarity=0.134 Sum_probs=47.8
Q ss_pred HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHh------hHHHHHHhhc--------CCCCccHHHHHHHH
Q 015150 336 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEK------SIRPCLVELS--------EDPDVDVRFFATQA 401 (412)
Q Consensus 336 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~------~i~~~l~~l~--------~d~~~~vr~~a~~a 401 (412)
+...+++.+.+.|+++.++++..+++.|..++.. |.+.+.. .++..+.... +|+-..||..|.+.
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~-Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK-SGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh-CCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 4578999999999999999999999999999854 3333322 2222222221 22335699999888
Q ss_pred HHHhH
Q 015150 402 LQSKD 406 (412)
Q Consensus 402 l~~~~ 406 (412)
+..+.
T Consensus 125 ~~ll~ 129 (140)
T 1vdy_A 125 ISAIF 129 (140)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87664
No 137
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=90.29 E-value=4.4 Score=32.71 Aligned_cols=160 Identities=14% Similarity=0.013 Sum_probs=90.8
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhc-cCCcHHHHHHHH-HHHHhcCcccChhHHHHh
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS-SDSSQHVRSALA-TVIMGMAPILGKDATIEQ 183 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~-~d~~~~vr~~~~-~~l~~l~~~~~~~~~~~~ 183 (412)
....+.++..++..+.|..|+..+....+...++. ++.+...+ ...+|.+-...+ ..++.+... ..+.
T Consensus 62 ~~~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~-----l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~-----~p~~ 131 (232)
T 3jxy_A 62 FQIIIRELWDLPEREFQAAALDIMQKYKKHINETH-----IPFLEELIVTKSWWDSVDSIVPTFLGDIFLK-----HPEL 131 (232)
T ss_dssp HHHHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGG-----HHHHHHHHTSSCCHHHHHHHTTTHHHHHHHH-----CGGG
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHccCCChHHHHHhhHHHHHHHHHH-----CHHH
Confidence 34567777788888899988888875544443331 12222222 356787766553 333433321 0122
Q ss_pred hHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHH
Q 015150 184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 263 (412)
Q Consensus 184 l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 263 (412)
..+.+.....+++..+|..++..+-. ...... ...+++.+.....|+..-|+.++..+|..++... .+.+.
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~l~---~~~~~d-~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~-----p~~v~ 202 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQLK---YKQKMD-EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTN-----PDVVW 202 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTTTT---CGGGCC-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHH---HHhCCC-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhC-----HHHHH
Confidence 45667777778888777776654321 111111 1345666777888888999999888887776543 22344
Q ss_pred HHHHHHhcCchhHHHHHHHHHHH
Q 015150 264 ALCMQWLKDKVYSIRDAAANNVK 286 (412)
Q Consensus 264 ~~l~~~l~d~~~~vr~~a~~~l~ 286 (412)
+.+.+. .-....+..|++.++
T Consensus 203 ~fl~~~--~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 203 EYVQNN--ELAPLSKREAIKHIK 223 (232)
T ss_dssp HHHHHS--CCCHHHHHHHTTTTH
T ss_pred HHHHHC--CCCHHHHHHHHHhcc
Confidence 444432 223344444555443
No 138
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=89.98 E-value=5 Score=30.26 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=45.2
Q ss_pred hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCH
Q 015150 64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNP 138 (412)
Q Consensus 64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~ 138 (412)
..+....+.+.++++++.+...++..|..++..+|. +....+++..+..+++. .++.||..++..+..++..+..
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345556666666667777777777777777666552 23333344444444433 4567777777777777766544
Q ss_pred H
Q 015150 139 E 139 (412)
Q Consensus 139 ~ 139 (412)
+
T Consensus 130 ~ 130 (163)
T 1x5b_A 130 D 130 (163)
T ss_dssp C
T ss_pred C
Confidence 3
No 139
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=87.23 E-value=1.8 Score=38.80 Aligned_cols=57 Identities=12% Similarity=0.051 Sum_probs=41.7
Q ss_pred chHHHHHHHHhHHHHhhccCchhh---hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHH
Q 015150 40 QDSVRLLAVEGCGALGKLLEPQDC---VAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 96 (412)
Q Consensus 40 ~~~~r~~a~~~l~~i~~~~~~~~~---~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~ 96 (412)
++.+-.-||.-+|.++++.|.... .-..-..+++++++++++||..|+.++.++...
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 566777888889999888776421 112556678888888888888888888877643
No 140
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=87.20 E-value=7.7 Score=29.00 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=60.4
Q ss_pred cCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhhh----hhhHHH-H
Q 015150 232 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQ-V 305 (412)
Q Consensus 232 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~~l~~-l 305 (412)
.+++|..-..++..+.. - . .-....+..+.+.++ ..++.+...|+..+..++++.|..+.. ..++.. +
T Consensus 30 ~~~Dw~~~leicD~I~~----~-~-~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~L 103 (157)
T 1elk_A 30 QSEDWALNMEICDIINE----T-E-EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVL 103 (157)
T ss_dssp SSCCHHHHHHHHHHHHH----S-S-SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHhC----C-C-ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHH
Confidence 35677765555554432 1 1 112335556677776 578888999999999999998876542 346665 4
Q ss_pred Hhhhc---CCchHHHHHHHHHHHHhccccc
Q 015150 306 LEMIN---NPHYLYRMTILQAISLLAPVMG 332 (412)
Q Consensus 306 ~~~~~---~~~~~~r~~~~~~l~~l~~~~~ 332 (412)
...+. ++...||..+++.+......++
T Consensus 104 vk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 104 VRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp HHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 55553 2345778888887777765554
No 141
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=86.82 E-value=16 Score=32.14 Aligned_cols=251 Identities=10% Similarity=0.081 Sum_probs=123.8
Q ss_pred CCcHHHHHHHHHHHHhcCcc--cC----hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHH-Hhhchh-hHHhhHHHH
Q 015150 155 DSSQHVRSALATVIMGMAPI--LG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN-QVIGID-LLSQSLLPA 226 (412)
Q Consensus 155 d~~~~vr~~~~~~l~~l~~~--~~----~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~-~~~~~~-~~~~~~~~~ 226 (412)
|++|.--..+.+.+..+... +. +..+...++-.+..+++.+|+.-|...-..|..+- +..+-. .+.+.+-..
T Consensus 95 e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inni 174 (403)
T 3fga_B 95 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 174 (403)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 45565555555555444322 11 12222344555666677777777766655555542 222211 111222222
Q ss_pred HHHHhcCCC-chHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhcCchhH-HHHHHHHHHHHHHHHhChhhhhhhh
Q 015150 227 IVELAEDRH-WRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQHI 301 (412)
Q Consensus 227 l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~ 301 (412)
+.++.-+.. ..--..+++.++.+...+.. +.....+...++.+-+.+... --.+...++..+++.- ..+...+
T Consensus 175 f~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD--p~L~~~v 252 (403)
T 3fga_B 175 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD--STLTEPV 252 (403)
T ss_dssp HHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHC--GGGHHHH
T ss_pred HHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhC--chhHHHH
Confidence 333222211 11112355566666655531 112222333333333333222 1123333444444321 1223445
Q ss_pred HHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHH---HhhHHHHHhhcCCCCchHHHHHHHHHH--HHhhhhc--hHH
Q 015150 302 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC---SQLLPVVINASKDRVPNIKFNVAKVLQ--SLIPIVD--QSV 374 (412)
Q Consensus 302 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~---~~il~~l~~~l~d~~~~vR~~~~~~l~--~l~~~~~--~~~ 374 (412)
+..+++..--.+..-....+.-+..+.+.++.+.+. ..++..+..++++++..|-..|+.... .+...+. ...
T Consensus 253 i~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~ 332 (403)
T 3fga_B 253 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAK 332 (403)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHH
Confidence 555555444556666677888888888888876543 345556677788888877776664431 1111111 123
Q ss_pred HHhhHHHHHHh-hcCCCCccHHHHHHHHHHHhHH
Q 015150 375 VEKSIRPCLVE-LSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 375 ~~~~i~~~l~~-l~~d~~~~vr~~a~~al~~~~~ 407 (412)
..+.+.|.|.+ ..+.=+..||..+..++..+.+
T Consensus 333 IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 333 ILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 34556666655 3455577799988888887654
No 142
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=86.51 E-value=3.9 Score=29.38 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=47.0
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhh
Q 015150 299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKS 378 (412)
Q Consensus 299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 378 (412)
..++|.|+..++|.||.+-...+..+..+ .+.++|.+.+.+++.+..-+.- .+..+...+.. .....
T Consensus 30 ~p~lp~LL~WLQD~NWPvA~~i~~~L~~~---------~~~l~p~I~~vl~s~D~~W~yw---il~~lv~~~~~-~~~~~ 96 (134)
T 3ut4_A 30 EPIIFDLLKWLQDYNWPIAKDILPVVVLH---------QSIAMPHILTILQGNDIMWKYW---VIKLMIPYLIY-PNKQL 96 (134)
T ss_dssp HHHHHHHHGGGSCTTSTTHHHHHHHHHHT---------HHHHHHHHHHHHHSSCHHHHHH---HHHHHGGGCCH-HHHHH
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHc---------cHhhHHHHHHHHHcCChHHHHH---HHHHHHHcCCH-HHHHH
Confidence 34666777777777776666665555542 2344555555544433333222 22223322222 23345
Q ss_pred HHHHHHhhcCCC-----CccHHHHHHHHHHHh
Q 015150 379 IRPCLVELSEDP-----DVDVRFFATQALQSK 405 (412)
Q Consensus 379 i~~~l~~l~~d~-----~~~vr~~a~~al~~~ 405 (412)
+.|.|.++...| ..+|...|...|..+
T Consensus 97 l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 97 VKSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp HHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 666666654443 334666666665554
No 143
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=86.43 E-value=11 Score=30.13 Aligned_cols=95 Identities=12% Similarity=0.188 Sum_probs=57.9
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHH----HhhhhhHHH
Q 015150 76 QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI----QHILPCVKE 151 (412)
Q Consensus 76 ~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~~~~~l~~ 151 (412)
.++||..=...+..+. . ......+.+..+.+-+++.++.+...|+..|..+.++.|..... ..++..+.+
T Consensus 22 ~~~dw~~ileicD~I~----~--~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~ 95 (226)
T 3zyq_A 22 LETDWESILQICDLIR----Q--GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKD 95 (226)
T ss_dssp SSCCHHHHHHHHHHHH----T--TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHh----C--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHH
Confidence 4567755444444332 1 22234677888888889999999999999999999988875221 112333333
Q ss_pred hc-cCCcHHHHHHHHHHHHhcCcccC
Q 015150 152 LS-SDSSQHVRSALATVIMGMAPILG 176 (412)
Q Consensus 152 ~~-~d~~~~vr~~~~~~l~~l~~~~~ 176 (412)
++ ...+..|+..+.+.+..-+..+.
T Consensus 96 l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 96 LLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 33 23455677766666655554443
No 144
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=85.93 E-value=6.4 Score=29.42 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=54.6
Q ss_pred hhhHHHHHhhhc-CCchHHHHHHHHHHHHhccccchhHH----HHhhHHH-HHhhcC---CCCchHHHHHHHHHHHHhhh
Q 015150 299 QHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPV-VINASK---DRVPNIKFNVAKVLQSLIPI 369 (412)
Q Consensus 299 ~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~----~~~il~~-l~~~l~---d~~~~vR~~~~~~l~~l~~~ 369 (412)
...+..+.+.++ +++..+...++..+..+.+.+|..+. ...++.. +.+.+. ++...||..++..+..+...
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 456667777776 47888889999999999988887632 3345665 556553 34458999999999999887
Q ss_pred hch
Q 015150 370 VDQ 372 (412)
Q Consensus 370 ~~~ 372 (412)
++.
T Consensus 132 f~~ 134 (157)
T 1elk_A 132 FRS 134 (157)
T ss_dssp HTT
T ss_pred cCC
Confidence 754
No 145
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=84.38 E-value=22 Score=31.74 Aligned_cols=252 Identities=11% Similarity=0.082 Sum_probs=128.4
Q ss_pred cCCcHHHHHHHHHHHHhcCcc--c----ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHh-hch-hhHHhhHHH
Q 015150 154 SDSSQHVRSALATVIMGMAPI--L----GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV-IGI-DLLSQSLLP 225 (412)
Q Consensus 154 ~d~~~~vr~~~~~~l~~l~~~--~----~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~-~~~-~~~~~~~~~ 225 (412)
.|++|.--..+.+.+..+... + .+..+...++-.+..+++.+|+.-|...-..|..+-.. .+- ..+.+.+-.
T Consensus 127 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 206 (449)
T 2npp_B 127 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206 (449)
T ss_dssp CCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356776666666666555322 2 23334455667777788888888887766666665322 221 122223333
Q ss_pred HHHHHhcCC-CchHHHHHHHHhhHHHhhhC---hhhHHHHHHHHHHHHhcCchhHH-HHHHHHHHHHHHHHhChhhhhhh
Q 015150 226 AIVELAEDR-HWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSI-RDAAANNVKRLAEEFGPDWAMQH 300 (412)
Q Consensus 226 ~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~l~~l~~~~~~~~~~~~ 300 (412)
.+.++.-+. ...--..+++.++.+...+. ++.....+...++.+.+.+.... -.+...++..+++.- ..+...
T Consensus 207 if~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD--p~L~~~ 284 (449)
T 2npp_B 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD--STLTEP 284 (449)
T ss_dssp HHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC--GGGHHH
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcC--cHhHHH
Confidence 333333221 11111234555555555443 12222223333344333332221 122333444444321 122344
Q ss_pred hHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHH---HhhHHHHHhhcCCCCchHHHHHHHHHH--HHhhhhc--hH
Q 015150 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC---SQLLPVVINASKDRVPNIKFNVAKVLQ--SLIPIVD--QS 373 (412)
Q Consensus 301 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~---~~il~~l~~~l~d~~~~vR~~~~~~l~--~l~~~~~--~~ 373 (412)
++..+++..--.+..-...++.-+..+.+.++...+. ..++..+..++++++..|-..|+..+. .+...+. ..
T Consensus 285 vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~ 364 (449)
T 2npp_B 285 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAA 364 (449)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHH
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchh
Confidence 5555555444455555667888888888888776544 345666777788888777766664432 1111111 11
Q ss_pred HHHhhHHHHHHh-hcCCCCccHHHHHHHHHHHhHH
Q 015150 374 VVEKSIRPCLVE-LSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 374 ~~~~~i~~~l~~-l~~d~~~~vr~~a~~al~~~~~ 407 (412)
...+.+.|.|.+ ..++=+..||..+..++..+.+
T Consensus 365 ~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 365 KILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp HHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred hhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 223344444544 2444566789888888876554
No 146
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=81.76 E-value=19 Score=29.01 Aligned_cols=67 Identities=15% Similarity=0.080 Sum_probs=34.8
Q ss_pred hHHHHHHhcCCChHHHHHHHHH----HHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcC
Q 015150 106 VVPAYVRLLRDNEAEVRIAAAG----KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMA 172 (412)
Q Consensus 106 l~~~l~~~l~d~~~~vr~~a~~----~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~ 172 (412)
..+.+.+.+.|++.-+|..++. .+..+.....++.....++..+...+.|++..|+.++.++|..++
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~g 179 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVA 179 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Confidence 4455556666666666666665 333311111122333445555555666666666666666665544
No 147
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=80.79 E-value=20 Score=28.56 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=14.6
Q ss_pred hHHHHHhhhcCCchHHHHHHHHHHHHhccccch
Q 015150 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGS 333 (412)
Q Consensus 301 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 333 (412)
.+..+.+.+++++..+..-++..+..+...+|.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~ 75 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA 75 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCH
Confidence 333444444444444444444444444444443
No 148
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=79.26 E-value=17 Score=26.93 Aligned_cols=98 Identities=12% Similarity=0.144 Sum_probs=61.6
Q ss_pred hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHhChhhhh----hhhHHH-
Q 015150 231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQ- 304 (412)
Q Consensus 231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~----~~~l~~- 304 (412)
+.+++|..-..++..+..= ..| ....+..+.+.+.. .++.+...|+..|..++++.|..+.. ..++..
T Consensus 29 l~~~Dw~~ileicD~In~~--~~~----pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~ 102 (152)
T 3rru_A 29 VQTEDWGQFMHICDIINTT--QDG----PKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKEN 102 (152)
T ss_dssp CCSCCHHHHHHHHHHHHHS--TTH----HHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhCC--Ccc----HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHH
Confidence 3456787555555554321 111 23355566666764 57777788999999999999886542 344543
Q ss_pred HHhhhcCC---chHHHHHHHHHHHHhccccchh
Q 015150 305 VLEMINNP---HYLYRMTILQAISLLAPVMGSE 334 (412)
Q Consensus 305 l~~~~~~~---~~~~r~~~~~~l~~l~~~~~~~ 334 (412)
+..++.++ ...||..++..+...+..++.+
T Consensus 103 L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~ 135 (152)
T 3rru_A 103 LVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGG 135 (152)
T ss_dssp TGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSS
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 44555432 3468888888888888777653
No 149
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=78.14 E-value=31 Score=29.39 Aligned_cols=8 Identities=13% Similarity=-0.002 Sum_probs=3.3
Q ss_pred HhhcCCCC
Q 015150 345 INASKDRV 352 (412)
Q Consensus 345 ~~~l~d~~ 352 (412)
..+..|+.
T Consensus 276 ~~L~~d~~ 283 (333)
T 3bwt_A 276 QSLLNDSY 283 (333)
T ss_dssp HHHHTSTT
T ss_pred HHHHcCCh
Confidence 33444443
No 150
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=77.72 E-value=34 Score=29.51 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=19.4
Q ss_pred HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhh
Q 015150 336 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL 386 (412)
Q Consensus 336 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l 386 (412)
|-.+++..++... .+..|...+..+......+....+-..++..+.++
T Consensus 295 ygnyViq~~L~~~---~~~~r~~i~~~i~~~~~~L~~~~~g~~i~~kl~~~ 342 (351)
T 3gvo_A 295 YANYVVQKMIDMA---EPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKY 342 (351)
T ss_dssp THHHHHHHHHHHC---CHHHHHHHHHHHGGGHHHHTTSTTTHHHHHHHHHH
T ss_pred chHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 4445555555443 23345444444332222222222334444444443
No 151
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=76.85 E-value=14 Score=29.47 Aligned_cols=31 Identities=3% Similarity=-0.070 Sum_probs=15.3
Q ss_pred HHHHHHHhccCCchHHHHHHHHhHHHHhhcc
Q 015150 28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLL 58 (412)
Q Consensus 28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~ 58 (412)
.+..+.+-+++.++.+...|+..+..+.+..
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNc 73 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNC 73 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence 3334444444555555555555555555544
No 152
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=75.40 E-value=63 Score=31.52 Aligned_cols=76 Identities=9% Similarity=0.066 Sum_probs=51.9
Q ss_pred HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC--hhHHHHhhHHHHHHhhcc---cChHHHHHHHHHHHHHHHhh
Q 015150 140 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKD---EFPDVRLNIISKLDQVNQVI 214 (412)
Q Consensus 140 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d---~~~~vr~~~~~~l~~i~~~~ 214 (412)
.+.+.+.|.+...+..++..+...+..++..++..-+ .+.+...++..+...+.. .++.--.++++++..++..+
T Consensus 335 ~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~l 414 (799)
T 1vsy_4 335 EIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFI 414 (799)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHH
Confidence 4556677787878888899988888888888874332 144555566666666655 45555566778888877665
Q ss_pred c
Q 015150 215 G 215 (412)
Q Consensus 215 ~ 215 (412)
-
T Consensus 415 v 415 (799)
T 1vsy_4 415 V 415 (799)
T ss_dssp T
T ss_pred h
Confidence 4
No 153
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=74.70 E-value=21 Score=25.65 Aligned_cols=92 Identities=14% Similarity=0.167 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhH
Q 015150 262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLL 341 (412)
Q Consensus 262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il 341 (412)
++|-++..|+|.||.+....+..|..+- +.++|.+.+.++..+..-+ ...+..+...++.+ ....+.
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~~-~~~~l~ 98 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWK---YWVIKLMIPYLIYP-NKQLVK 98 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHH---HHHHHHHGGGCCHH-HHHHHH
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHH---HHHHHHHHHcCCHH-HHHHHH
Confidence 6677777788888887777666655422 2355666655554443222 23333444344433 345566
Q ss_pred HHHHhhcCCC-----CchHHHHHHHHHHHH
Q 015150 342 PVVINASKDR-----VPNIKFNVAKVLQSL 366 (412)
Q Consensus 342 ~~l~~~l~d~-----~~~vR~~~~~~l~~l 366 (412)
|.+.++...+ ...|...|-+.|..+
T Consensus 99 ~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 99 SELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp HHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 6666665543 233444444444443
No 154
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=71.51 E-value=47 Score=28.29 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=35.2
Q ss_pred HHHHHHhhcccChHHHHHHHHHHHHHHHhh-chhhH--HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhh
Q 015150 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 252 (412)
Q Consensus 185 ~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~-~~~~~--~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 252 (412)
+..+.+...+.+.+.+.-+++++..+..+. |-+.+ .+.++..+..++.+.+..|-+.+++.+-.++..
T Consensus 162 L~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~ 232 (339)
T 3dad_A 162 LSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEY 232 (339)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHcc
Confidence 445555555556666666666666665442 11111 133444455555555555555555555555443
No 155
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=69.84 E-value=44 Score=27.23 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHhccccchhH----HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh-hch-------HHH---Hhh
Q 015150 314 YLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI-VDQ-------SVV---EKS 378 (412)
Q Consensus 314 ~~~r~~~~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~-~~~-------~~~---~~~ 378 (412)
..+|.+++..+|.+.+.-..+- ...+++|.++..++-.+.--|..|.-.+.++... .|- +.+ ...
T Consensus 116 E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~v 195 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMI 195 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHH
Confidence 6789999999999887644441 2456889888888877777777777777777432 111 111 123
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 379 IRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 379 i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
+-..+..+.++|++..-+++...+-.+.+
T Consensus 196 L~~mV~~l~~~ps~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 196 LGKMVLQLSKEPSARLLKHVVRCYLRLSD 224 (268)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 33444557788888888888887776654
No 156
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=68.26 E-value=67 Score=28.74 Aligned_cols=250 Identities=12% Similarity=0.130 Sum_probs=134.2
Q ss_pred CCChHHHHHHHHHHHHHHHH--hCCC----CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHH-hhCHH-HHHHhhhhh
Q 015150 77 DKSWRVRYMVANQLYELCEA--VGPE----PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR-ILNPE-LAIQHILPC 148 (412)
Q Consensus 77 d~~~~vR~~~~~~l~~l~~~--~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~-~~~~~~~~~ 148 (412)
|++|..-..+-+.|-.+... +... ......+-.+..++..+|+.-|...-..|..+-. ..+-. .+...+-..
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni 207 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56787666666666666543 2211 2234467778889999999999998888877643 33332 222223333
Q ss_pred HHHhccCCcH-HHHHHHHHHHHhcCcccC---hhHHHHhhHHHHHHhhcccChHH-HHHHHHHHHHHHHhhchhhHHhhH
Q 015150 149 VKELSSDSSQ-HVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDV-RLNIISKLDQVNQVIGIDLLSQSL 223 (412)
Q Consensus 149 l~~~~~d~~~-~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~v-r~~~~~~l~~i~~~~~~~~~~~~~ 223 (412)
+.+.+.+.+. .--....+.++.+..-+. ++.....+...+..+.+...-.. -.....++.++.+. + ..+...+
T Consensus 208 f~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-D-p~L~~~v 285 (449)
T 2npp_B 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-D-STLTEPV 285 (449)
T ss_dssp HHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH-C-GGGHHHH
T ss_pred HHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc-C-cHhHHHH
Confidence 3333322111 111234555555544332 12222223333333333322111 11233444444432 1 2233455
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHH---HHHHHHHHhcCchhHHHHHHHHHHHH--HHHHhChhhhh
Q 015150 224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLKDKVYSIRDAAANNVKR--LAEEFGPDWAM 298 (412)
Q Consensus 224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~--l~~~~~~~~~~ 298 (412)
+..+.+.+--.+..-....+..+..+.+..++..+... +...+-.++++++..|-+.|+..+.. +...+.. ..
T Consensus 286 i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~--n~ 363 (449)
T 2npp_B 286 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD--NA 363 (449)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT--TH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHh--ch
Confidence 66666666666666667777888888888887766544 44445567889999999998766431 1221111 12
Q ss_pred hhhHHHHHhhh-----cCCchHHHHHHHHHHHHhccc
Q 015150 299 QHIVPQVLEMI-----NNPHYLYRMTILQAISLLAPV 330 (412)
Q Consensus 299 ~~~l~~l~~~~-----~~~~~~~r~~~~~~l~~l~~~ 330 (412)
..++|.+...+ ++.+..+|..+..++..+.+.
T Consensus 364 ~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 364 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp HHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred hhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 34555554433 344566888888888877653
No 157
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=66.51 E-value=20 Score=28.87 Aligned_cols=72 Identities=10% Similarity=-0.044 Sum_probs=52.2
Q ss_pred hHHHHHhhccCCChHHHHHHHH----HHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH
Q 015150 67 ILPVIVNFSQDKSWRVRYMVAN----QLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 138 (412)
Q Consensus 67 l~~~l~~l~~d~~~~vR~~~~~----~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 138 (412)
..+.+.....|++.-+|+.+.. .+..+.....++.....+++.+...+.|++..|+++...+|..+++..++
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~ 184 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVP 184 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHH
Confidence 3555677777777666666666 65655544444455677888888888888899999999999888877544
No 158
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=66.44 E-value=35 Score=24.81 Aligned_cols=64 Identities=14% Similarity=0.067 Sum_probs=39.5
Q ss_pred HHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 015150 228 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 292 (412)
Q Consensus 228 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 292 (412)
.+...+.+|..--....-+..+...... .....+++.+.+.|++.++.+..-|++.|..++..-
T Consensus 17 ~~ATs~d~~~~pgylm~EIA~~T~~s~~-~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~G 80 (140)
T 1vdy_A 17 DAVTSDEDKVAPVYKLEEICDLLRSSHV-SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKS 80 (140)
T ss_dssp HHTTCSCSSCCCHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTS
T ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhC
Confidence 4445555565444444444444332221 233568888888888888888888888887777543
No 159
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=65.44 E-value=37 Score=24.79 Aligned_cols=69 Identities=10% Similarity=-0.007 Sum_probs=35.7
Q ss_pred HhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH---HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150 338 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 406 (412)
Q Consensus 338 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~ 406 (412)
..+...+.+.+....|.-|..++-.+..+.+..|.+ .|...+.+.+.......+.++|....+.+..+.
T Consensus 42 ~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 42 QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 344444444444445555666666666666555543 233334444444434445666666666666554
No 160
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=64.44 E-value=74 Score=27.93 Aligned_cols=251 Identities=11% Similarity=0.098 Sum_probs=132.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHhC------CCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHH-HhhCHHH-HHHhhhh
Q 015150 76 QDKSWRVRYMVANQLYELCEAVG------PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC-RILNPEL-AIQHILP 147 (412)
Q Consensus 76 ~d~~~~vR~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~-~~~~~~~-~~~~~~~ 147 (412)
.|++|..-..+-+.+..+...-. ........+-.+..++.++|+.-|...-..|..+- +..+-.. +...+-.
T Consensus 94 ~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inn 173 (403)
T 3fga_B 94 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 173 (403)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 46678777777777766655321 22233346666788999999999999988887753 3333222 2222223
Q ss_pred hHHHhccCCcH-HHHHHHHHHHHhcCcccC---hhHHHHhhHHHHHHhhcccChH-HHHHHHHHHHHHHHhhchhhHHhh
Q 015150 148 CVKELSSDSSQ-HVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLSQS 222 (412)
Q Consensus 148 ~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~~~~~l~~i~~~~~~~~~~~~ 222 (412)
.+.+.+.+... .--....+.++.+..-+. ++.....+...+..+-+-..-. --.....++..+.+. + ..+...
T Consensus 174 if~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK-D-p~L~~~ 251 (403)
T 3fga_B 174 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-D-STLTEP 251 (403)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH-C-GGGHHH
T ss_pred HHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh-C-chhHHH
Confidence 33332221110 101124444444443321 1111222222233332222111 112233444444432 1 223345
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHH---HHHHHHHhcCchhHHHHHHHHHHH-----HHHHHhCh
Q 015150 223 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL---GALCMQWLKDKVYSIRDAAANNVK-----RLAEEFGP 294 (412)
Q Consensus 223 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l---~~~l~~~l~d~~~~vr~~a~~~l~-----~l~~~~~~ 294 (412)
++..+.+..--.+..-....+.-+..+.+..++..+.... ...+..++++++..|-+.|+..+. .++... .
T Consensus 252 vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n-~ 330 (403)
T 3fga_B 252 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDN-A 330 (403)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTT-H
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHh-H
Confidence 5666666666666666777778888888888777665444 444456678899999998876642 222111 1
Q ss_pred hhhhhhhHHHHHhh-hcCCchHHHHHHHHHHHHhcc
Q 015150 295 DWAMQHIVPQVLEM-INNPHYLYRMTILQAISLLAP 329 (412)
Q Consensus 295 ~~~~~~~l~~l~~~-~~~~~~~~r~~~~~~l~~l~~ 329 (412)
+.+...+.|.+.+. -++.+..+|..+..++..+.+
T Consensus 331 ~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 331 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 22233444445443 335567788888888877754
No 161
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=62.06 E-value=74 Score=27.10 Aligned_cols=99 Identities=11% Similarity=0.084 Sum_probs=64.4
Q ss_pred CChHHHHHHHHHHHHHHHH---hhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc-ChhHHH--HhhHHHHH
Q 015150 116 DNEAEVRIAAAGKVTKICR---ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL-GKDATI--EQLLPIFL 189 (412)
Q Consensus 116 d~~~~vr~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~~~--~~l~~~l~ 189 (412)
+.+...+..++..|..+.. .+-.+.+...-+..+.+...+.+......+..++.++..+. |-+.+. ..++..+.
T Consensus 129 ~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~ly 208 (339)
T 3dad_A 129 SSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLY 208 (339)
T ss_dssp HCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHH
Confidence 3445556666666665321 12233344445667777777778888888888888887652 333332 45667777
Q ss_pred HhhcccChHHHHHHHHHHHHHHHhh
Q 015150 190 SLLKDEFPDVRLNIISKLDQVNQVI 214 (412)
Q Consensus 190 ~~l~d~~~~vr~~~~~~l~~i~~~~ 214 (412)
.++...+..|-+.+++-|..++.+.
T Consensus 209 slv~s~~~~V~k~AL~LL~v~V~~s 233 (339)
T 3dad_A 209 TLCASLSRLVVKTALKLLLVFVEYS 233 (339)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCccHHHHHHHHHHHHHHHccC
Confidence 7777777888888888888887663
No 162
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=56.79 E-value=97 Score=26.79 Aligned_cols=9 Identities=44% Similarity=0.589 Sum_probs=4.0
Q ss_pred hHHHHHHhh
Q 015150 378 SIRPCLVEL 386 (412)
Q Consensus 378 ~i~~~l~~l 386 (412)
.+.|.+..+
T Consensus 335 ~i~p~l~~L 343 (369)
T 3k49_A 335 AIRAYLDKL 343 (369)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 163
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=56.05 E-value=86 Score=32.48 Aligned_cols=154 Identities=10% Similarity=0.046 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC
Q 015150 22 AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 101 (412)
Q Consensus 22 ~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~ 101 (412)
+.+...++.+...++.+.++.+|..+......+...+ +......++..+.....+.+..--.+++..|..++.......
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f-d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l 473 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF-DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAM 473 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHH
Q ss_pred -cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC
Q 015150 102 -TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG 176 (412)
Q Consensus 102 -~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 176 (412)
.....+.-+...+++-+..--......+..++-.-+.+ .+...+.-.+.+.++.++...+...+-....++..++
T Consensus 474 ~~~a~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v~~~~ 552 (1323)
T 3s4w_B 474 RLNAAFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMAGIMA 552 (1323)
T ss_dssp HHTHHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHHHHHH
No 164
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=51.16 E-value=1.3e+02 Score=28.07 Aligned_cols=106 Identities=12% Similarity=-0.004 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhh------hhhhHHHH----HhhccCCChHHHHHHHHHHH
Q 015150 22 AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC------VAHILPVI----VNFSQDKSWRVRYMVANQLY 91 (412)
Q Consensus 22 ~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~------~~~l~~~l----~~l~~d~~~~vR~~~~~~l~ 91 (412)
....+.-++++..+++++++.+...+...+..+...+.+... .....+++ .-....|+..+|..+...++
T Consensus 312 ~~if~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~ 391 (596)
T 4f52_E 312 LYLLQFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQ 391 (596)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence 345555667888888888887777778887777766544211 11112222 22344677888888888888
Q ss_pred HHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHH
Q 015150 92 ELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVT 130 (412)
Q Consensus 92 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 130 (412)
.+...++.+. +-.++..+.+-+. .+.++..++..+.
T Consensus 392 ~~I~~~~~e~-R~~iL~~LL~~~~--~~~v~~~lI~~~K 427 (596)
T 4f52_E 392 LYINKLDSQG-KYTLFRCLLNTSN--HSGVEAFIIQNIK 427 (596)
T ss_dssp HHHHHBCHHH-HHHHHHHHHHHHC--CHHHHHHHHHHHH
T ss_pred HHHHhCChHH-HHHHHHHHHhcCC--ChHHHHHHHHHHH
Confidence 8887765442 3334444444333 3566666665554
No 165
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=51.02 E-value=1.1e+02 Score=25.68 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHhcccc-chhH---HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH---HHHhhHHHHHHhh
Q 015150 314 YLYRMTILQAISLLAPVM-GSEI---TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVEL 386 (412)
Q Consensus 314 ~~~r~~~~~~l~~l~~~~-~~~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l 386 (412)
...+..+++++..+...- |.+. ....++..+...+.+++.++|.+++..+-+++-..... .-...++..+.+.
T Consensus 162 p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~i 241 (304)
T 3ebb_A 162 PANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTI 241 (304)
T ss_dssp HHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 445677777776664321 2221 23456677777777888999999998888886543210 1122344545443
Q ss_pred c-CCCCccHHHHHHHHHHHhHH
Q 015150 387 S-EDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 387 ~-~d~~~~vr~~a~~al~~~~~ 407 (412)
. ...|.|....+.-|+|++..
T Consensus 242 l~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 242 LEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHHHHHHHHHHHHHh
Confidence 3 45678899999999998874
No 166
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=50.89 E-value=72 Score=23.52 Aligned_cols=73 Identities=8% Similarity=0.084 Sum_probs=32.4
Q ss_pred hhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHHhCC----CCcccchHH-HHHHhcCC---ChHHHHHHHHHHHHHHHHh
Q 015150 65 AHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP----EPTRSDVVP-AYVRLLRD---NEAEVRIAAAGKVTKICRI 135 (412)
Q Consensus 65 ~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~----~~~~~~l~~-~l~~~l~d---~~~~vr~~a~~~l~~l~~~ 135 (412)
.+....+.+-++ .+++.+...++..|..++..+|. +....+++. .+.+++++ ....||..++..+..++..
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 334444444333 24555555555555555554441 122222222 13333332 2245666666666666555
Q ss_pred hC
Q 015150 136 LN 137 (412)
Q Consensus 136 ~~ 137 (412)
+.
T Consensus 132 F~ 133 (152)
T 3rru_A 132 FP 133 (152)
T ss_dssp CS
T ss_pred hC
Confidence 43
No 167
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=49.16 E-value=1.4e+02 Score=26.19 Aligned_cols=208 Identities=12% Similarity=0.120 Sum_probs=108.8
Q ss_pred cCCChHHHHHHHHHHHHHHHHh--C----CCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHH-HhhCHHH-HHHhhhh
Q 015150 76 QDKSWRVRYMVANQLYELCEAV--G----PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC-RILNPEL-AIQHILP 147 (412)
Q Consensus 76 ~d~~~~vR~~~~~~l~~l~~~~--~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~-~~~~~~~-~~~~~~~ 147 (412)
.|++|.--..+-+.+-.+...- . ........+-.+..+++.+|+.-|......+..+- +..+-.. +...+-.
T Consensus 139 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 218 (392)
T 2jak_A 139 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 218 (392)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566776666666666665431 1 22333456777888889999999998888886653 3333322 2223333
Q ss_pred hHHHhccCCcH-HHHHHHHHHHHhcCcccC---hhHHHHhhHHHHHHhhcccChHH-HHHHHHHHHHHHHhhchhhHHhh
Q 015150 148 CVKELSSDSSQ-HVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDV-RLNIISKLDQVNQVIGIDLLSQS 222 (412)
Q Consensus 148 ~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~v-r~~~~~~l~~i~~~~~~~~~~~~ 222 (412)
.+.+.+.+.+. .--..+.+.++.+..-+. ++.....+...+..+.+...-.. -.....++.++.+. + ..+...
T Consensus 219 if~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-D-p~L~~~ 296 (392)
T 2jak_A 219 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-D-STLTEP 296 (392)
T ss_dssp HHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH-C-GGGHHH
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc-C-chhHHH
Confidence 33443322211 111234445555443332 12222223333333333222111 11223344444322 1 222344
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHH---HHHHhcCchhHHHHHHHHHH
Q 015150 223 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLKDKVYSIRDAAANNV 285 (412)
Q Consensus 223 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l 285 (412)
++..+.+.+--.+..-....+..+..+.+.++++.+.....|+ +-.++++++..|-+.|+..+
T Consensus 297 vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 297 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 5566666665556666667778888888888776665444444 55667888888888876654
No 168
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=48.56 E-value=2e+02 Score=28.05 Aligned_cols=109 Identities=9% Similarity=0.020 Sum_probs=64.0
Q ss_pred chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC--HHHHHHhhhhhHHHhccC---CcHHHHHHHHHHHHhcCcccCh-h
Q 015150 105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--PELAIQHILPCVKELSSD---SSQHVRSALATVIMGMAPILGK-D 178 (412)
Q Consensus 105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d---~~~~vr~~~~~~l~~l~~~~~~-~ 178 (412)
-+.|.+...+.+.+..+...+..++..++-.-+ ++.+...++..+...++. .++.--.++++++..++..+-. .
T Consensus 339 ~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~ 418 (799)
T 1vsy_4 339 IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK 418 (799)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST
T ss_pred HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc
Confidence 366777777788889999999999988876544 144444455555455544 4455455667777777654321 2
Q ss_pred HHHHhhHHHHHHh---hcccChHHHHHHHHHHHHHHHh
Q 015150 179 ATIEQLLPIFLSL---LKDEFPDVRLNIISKLDQVNQV 213 (412)
Q Consensus 179 ~~~~~l~~~l~~~---l~d~~~~vr~~~~~~l~~i~~~ 213 (412)
.+...+.|.+..+ ++-+|+.--..+++.+..+...
T Consensus 419 ~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ 456 (799)
T 1vsy_4 419 LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAF 456 (799)
T ss_dssp TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHh
Confidence 2334555554443 3334454444556666666544
No 169
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=48.07 E-value=1.1e+02 Score=24.90 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=40.7
Q ss_pred HHHHHHHHHhccCC-chHHHHHHHHhHHHHhhccCchh----hhhhhHHHHHhhccCCChHHHHHHHHHHHHHH
Q 015150 26 SEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQD----CVAHILPVIVNFSQDKSWRVRYMVANQLYELC 94 (412)
Q Consensus 26 ~~l~~~l~~l~~~~-~~~~r~~a~~~l~~i~~~~~~~~----~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~ 94 (412)
-.+.|++....++. .+..|..++..++.+++.-.++. ...+++|+++...+..+...+..+...+.++.
T Consensus 100 lyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 100 LFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp GGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 34556644433333 24567777777777776533321 23447777777777777766766666666665
No 170
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=47.63 E-value=1.3e+02 Score=25.67 Aligned_cols=14 Identities=14% Similarity=0.055 Sum_probs=7.1
Q ss_pred hhhhhHHHhccCCc
Q 015150 144 HILPCVKELSSDSS 157 (412)
Q Consensus 144 ~~~~~l~~~~~d~~ 157 (412)
.+.+.+..++.|..
T Consensus 131 el~~~~~~L~~d~~ 144 (351)
T 3gvo_A 131 ELDGHVLKCVKDQN 144 (351)
T ss_dssp GGTTCHHHHHHSTT
T ss_pred HhhhhHHHHHHhhh
Confidence 34455555555544
No 171
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=46.10 E-value=1.1e+02 Score=24.89 Aligned_cols=65 Identities=12% Similarity=-0.017 Sum_probs=30.8
Q ss_pred HhccCCchHHHHHHHHhHHHHhhccC-ch-hh-----hhhhHHHHHhhccC----CChHHHHHHHHHHHHHHHHhC
Q 015150 34 ELTQDDQDSVRLLAVEGCGALGKLLE-PQ-DC-----VAHILPVIVNFSQD----KSWRVRYMVANQLYELCEAVG 98 (412)
Q Consensus 34 ~l~~~~~~~~r~~a~~~l~~i~~~~~-~~-~~-----~~~l~~~l~~l~~d----~~~~vR~~~~~~l~~l~~~~~ 98 (412)
..+.+.++..+..+++++.++...-. .. .. ...++..+.....| ++..+|.+++..+-+++-...
T Consensus 97 ~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~ 172 (253)
T 3gae_A 97 EGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVT 172 (253)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHh
Confidence 33334455667777777776665432 11 11 11122222221112 245566666666666655433
No 172
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=45.83 E-value=84 Score=22.87 Aligned_cols=72 Identities=10% Similarity=0.033 Sum_probs=51.6
Q ss_pred hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh
Q 015150 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 369 (412)
Q Consensus 298 ~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 369 (412)
.+.+...+.+.+....+..|..++..+..++...|.+ .|...+.+.+.+.....++.+|....+.+..+-..
T Consensus 41 a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 41 AQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 3456666666666666778888888888888877765 24555666666665556788999999999988744
No 173
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=44.73 E-value=81 Score=22.37 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=51.2
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHH---hh
Q 015150 267 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCS---QL 340 (412)
Q Consensus 267 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~---~i 340 (412)
++-|+.....+...+..++... ...+.+...+.+.+.......|...+..+..+....+.. .|.+ .+
T Consensus 14 L~~L~~s~~sI~~~s~w~l~h~-------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~ 86 (132)
T 4flb_A 14 FQSVTNTMESIQGLSSWCIENK-------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADV 86 (132)
T ss_dssp HHHCCSSHHHHHHHHHHHHHTG-------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTT
T ss_pred HHHCcccHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 3445555555555444443321 113445556665566556667888888888887655332 2333 34
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150 341 LPVVINASKDRVPNIKFNVAKVLQSLIP 368 (412)
Q Consensus 341 l~~l~~~l~d~~~~vR~~~~~~l~~l~~ 368 (412)
+|..+.... ++..|....+.+..+-.
T Consensus 87 l~~~~~~~~--~~~~~~kl~~ll~iW~~ 112 (132)
T 4flb_A 87 LPEAAALVK--DPSVSKSVERIFKIWED 112 (132)
T ss_dssp HHHHHHTTC--STTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CHHHHHHHHHHHHHhcc
Confidence 444444443 34677777777776643
No 174
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=44.38 E-value=1.6e+02 Score=25.72 Aligned_cols=208 Identities=11% Similarity=0.079 Sum_probs=114.2
Q ss_pred cCCcHHHHHHHHHHHHhcCcc--cC----hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHH-hhch-hhHHhhHHH
Q 015150 154 SDSSQHVRSALATVIMGMAPI--LG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ-VIGI-DLLSQSLLP 225 (412)
Q Consensus 154 ~d~~~~vr~~~~~~l~~l~~~--~~----~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~-~~~~-~~~~~~~~~ 225 (412)
.|++|.--..+.+.+..+... +. +..+...++-.+..+++.+|+.-|......+..+-. ..+- ..+.+.+-.
T Consensus 139 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 218 (392)
T 2jak_A 139 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 218 (392)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467887777777777665432 22 222334566777888888899888887777766632 2232 222233334
Q ss_pred HHHHHhcCCC-chHHHHHHHHhhHHHhhhC---hhhHHHHHHHHHHHHhcCchhHH-HHHHHHHHHHHHHHhChhhhhhh
Q 015150 226 AIVELAEDRH-WRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSI-RDAAANNVKRLAEEFGPDWAMQH 300 (412)
Q Consensus 226 ~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~l~~l~~~~~~~~~~~~ 300 (412)
.+.++..+.. ..-=..+++.++.+...+. ++.....+...++.+.+.+...+ -.+...++..+++. . ..+...
T Consensus 219 if~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-D-p~L~~~ 296 (392)
T 2jak_A 219 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-D-STLTEP 296 (392)
T ss_dssp HHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH-C-GGGHHH
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc-C-chhHHH
Confidence 4444443322 2112345666777776654 22223333444444444433222 12233344444432 1 122334
Q ss_pred hHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHH---HhhHHHHHhhcCCCCchHHHHHHHHH
Q 015150 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC---SQLLPVVINASKDRVPNIKFNVAKVL 363 (412)
Q Consensus 301 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~---~~il~~l~~~l~d~~~~vR~~~~~~l 363 (412)
++..+++..--.+..-....+.-+..+.+.++.+.+. ..++..+..++++++..|-..|+...
T Consensus 297 vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 297 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 4455554444444445567888888888888877544 45566677788888888877666433
No 175
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=39.92 E-value=34 Score=29.60 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=55.9
Q ss_pred HHHHHHhccCCchHHHHHHHHhHHHHhhccC-ch-hh-----hhhhHHHHHhhc----cCCChHHHHHHHHHHHHHHHHh
Q 015150 29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLE-PQ-DC-----VAHILPVIVNFS----QDKSWRVRYMVANQLYELCEAV 97 (412)
Q Consensus 29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~-~~-~~-----~~~l~~~l~~l~----~d~~~~vR~~~~~~l~~l~~~~ 97 (412)
..++...+.+..+..++.+++++.++...-. .. .. ...++..+.... ..++..+|.+++..+-+++...
T Consensus 201 ~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~ 280 (362)
T 3l3f_X 201 KDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV 280 (362)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHH
Confidence 3344444555667788888888888876533 11 11 112233332221 1234667888777777776554
Q ss_pred CCCCcccchHHHHHHhcC---------CChHHHHHHHHHHHHHHH
Q 015150 98 GPEPTRSDVVPAYVRLLR---------DNEAEVRIAAAGKVTKIC 133 (412)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~---------d~~~~vr~~a~~~l~~l~ 133 (412)
..+....++.+.+.+++. ..+.+....++-++|.+.
T Consensus 281 ~~~~~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~ 325 (362)
T 3l3f_X 281 TKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 325 (362)
T ss_dssp HHTCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHH
Confidence 332222344555555444 135566666666666655
No 176
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=39.42 E-value=1.9e+02 Score=24.98 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=24.5
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhccCCc
Q 015150 104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSS 157 (412)
Q Consensus 104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~ 157 (412)
.++.+.+.++..| ..++..+..+.+..+++ .+.+.+.+.+..+..|..
T Consensus 27 ~~i~g~i~~l~~d------~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~ 77 (369)
T 3k49_A 27 KDIFGHSLEFCKD------QHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVF 77 (369)
T ss_dssp GGGTTCHHHHHTS------HHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTT
T ss_pred HHHHHHHHHHHcC------CcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcc
Confidence 4455555555555 23344455544444433 234445666666666654
No 177
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=38.81 E-value=75 Score=23.16 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=39.7
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh------HHHHh----hHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150 299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE------ITCSQ----LLPVVINASKDRVPNIKFNVAKVLQSLI 367 (412)
Q Consensus 299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~------~~~~~----il~~l~~~l~d~~~~vR~~~~~~l~~l~ 367 (412)
+.+...+.+.+....+..|..++..+..++...+.+ .|... +.+.+...+. ..+..|....+.+..+-
T Consensus 41 ~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~-~~~~~r~kl~rLl~iW~ 118 (145)
T 3d9j_A 41 KHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYR-CPGDDKSKIVRVLNLWQ 118 (145)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTS-SCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhc
Confidence 344455555554445556777777777776655441 23333 3333333333 34889999999888885
No 178
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=37.00 E-value=1.2e+02 Score=22.71 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=37.0
Q ss_pred CchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 015150 59 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 133 (412)
Q Consensus 59 ~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 133 (412)
+.+++...+.+++..+..+.+. ..++.++..+. ...+...++..+....-|..+.-|+.+...|..+.
T Consensus 5 s~ee~~kk~~~ii~EYf~~~D~---~Ea~~~l~eL~----~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~ 72 (165)
T 2rg8_A 5 DERAFEKTLTPIIQEYFEHGDT---NEVAEMLRDLN----LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 72 (165)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHT----CSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHB
T ss_pred CHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHhC----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3445555666666666655444 33444444332 22234455555555555666667777777776653
No 179
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=36.56 E-value=1.9e+02 Score=24.39 Aligned_cols=137 Identities=13% Similarity=0.213 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCcccC-hhHHHHhhHHHHHH-hhcc---cChHHHH-HHHHHHHHHHHhhch----hh--HHhhHHH
Q 015150 158 QHVRSALATVIMGMAPILG-KDATIEQLLPIFLS-LLKD---EFPDVRL-NIISKLDQVNQVIGI----DL--LSQSLLP 225 (412)
Q Consensus 158 ~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~-~l~d---~~~~vr~-~~~~~l~~i~~~~~~----~~--~~~~~~~ 225 (412)
..||+...+.+........ .+...+.++|.+.+ .+.| ..|+.|. .+++.+..++..++. .. +.+.++.
T Consensus 43 R~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe 122 (321)
T 1w9c_A 43 RTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFE 122 (321)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3566666666666554443 23444566666554 4554 2233332 223344444444432 11 1122222
Q ss_pred HHHHHhc---CCCchHHHHHHHHhhHHHhhhChhhHH------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh
Q 015150 226 AIVELAE---DRHWRVRLAIIEYIPLLASQLGVGFFD------DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 294 (412)
Q Consensus 226 ~l~~~~~---d~~~~vr~~~~~~l~~l~~~~~~~~~~------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 294 (412)
.-..+.+ ++.|..|....+.+..+....-...+. ..++..++...++++.+|-..++..+..++++++.
T Consensus 123 ~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~ 200 (321)
T 1w9c_A 123 CTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ 200 (321)
T ss_dssp HHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc
Confidence 2333444 256778888888777777766554443 23444555556777777888777777777777653
No 180
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=36.42 E-value=42 Score=29.66 Aligned_cols=104 Identities=10% Similarity=0.038 Sum_probs=54.3
Q ss_pred HHHHHhccCCchHHHHHHHHhHHHHhhccC-ch-hhh-hhhHHHHHhhc--------cCCChHHHHHHHHHHHHHHHHhC
Q 015150 30 SIFEELTQDDQDSVRLLAVEGCGALGKLLE-PQ-DCV-AHILPVIVNFS--------QDKSWRVRYMVANQLYELCEAVG 98 (412)
Q Consensus 30 ~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~-~~-~~~-~~l~~~l~~l~--------~d~~~~vR~~~~~~l~~l~~~~~ 98 (412)
.++...+.+..+..+..+++++.++...-. .. ... ..+...+.+.+ ..++..+|.+++..+-+++....
T Consensus 265 ~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~ 344 (425)
T 3pst_A 265 DYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVT 344 (425)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHh
Confidence 344444455567788888888888776532 11 111 11222222222 12345678887777777765543
Q ss_pred CCCcccchHHHHHHhcC---------CChHHHHHHHHHHHHHHH
Q 015150 99 PEPTRSDVVPAYVRLLR---------DNEAEVRIAAAGKVTKIC 133 (412)
Q Consensus 99 ~~~~~~~l~~~l~~~l~---------d~~~~vr~~a~~~l~~l~ 133 (412)
......++.+.+.+++. ..+.+....++-++|.+.
T Consensus 345 ~~~~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv 388 (425)
T 3pst_A 345 KGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 388 (425)
T ss_dssp HSCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHH
Confidence 32222344455555443 134556666666666655
No 181
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=33.51 E-value=34 Score=30.26 Aligned_cols=97 Identities=10% Similarity=0.134 Sum_probs=51.5
Q ss_pred CCchHHHHHHHHHHHHhcccc--chhHHH-HhhHHHHHhhcC--------CCCchHHHHHHHHHHHHhhhhchHHHHhhH
Q 015150 311 NPHYLYRMTILQAISLLAPVM--GSEITC-SQLLPVVINASK--------DRVPNIKFNVAKVLQSLIPIVDQSVVEKSI 379 (412)
Q Consensus 311 ~~~~~~r~~~~~~l~~l~~~~--~~~~~~-~~il~~l~~~l~--------d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i 379 (412)
+..+..+..+++++..+...- |...+. ..+...+++.+. +.+.++|.+++..+-+++-..-.......+
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~~el 352 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 352 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTH
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchHHH
Confidence 445677778888777764321 222111 112233333321 235678888888887776543221111123
Q ss_pred HHHHHhhcC---------CCCccHHHHHHHHHHHhHH
Q 015150 380 RPCLVELSE---------DPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 380 ~~~l~~l~~---------d~~~~vr~~a~~al~~~~~ 407 (412)
.+.+..+++ ..|.+....+.-|+|++.-
T Consensus 353 ~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 353 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 333333222 2478888899999998873
No 182
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=32.92 E-value=30 Score=29.86 Aligned_cols=97 Identities=9% Similarity=0.119 Sum_probs=49.1
Q ss_pred CCchHHHHHHHHHHHHhcccc--chhHH-----HHhhHHHHHhhc----CCCCchHHHHHHHHHHHHhhhhchHHHHhhH
Q 015150 311 NPHYLYRMTILQAISLLAPVM--GSEIT-----CSQLLPVVINAS----KDRVPNIKFNVAKVLQSLIPIVDQSVVEKSI 379 (412)
Q Consensus 311 ~~~~~~r~~~~~~l~~l~~~~--~~~~~-----~~~il~~l~~~l----~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i 379 (412)
+..+..+..+++++..+-..- |...+ ...++..+...+ .+.+.++|.+++..+-+++-..-.+.....+
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~~el 289 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 289 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTH
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchHHH
Confidence 344566777777776664321 11111 112222222222 1235678888887777776433221111122
Q ss_pred HHHHHhhcC---------CCCccHHHHHHHHHHHhHH
Q 015150 380 RPCLVELSE---------DPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 380 ~~~l~~l~~---------d~~~~vr~~a~~al~~~~~ 407 (412)
.+.+..+++ ..|.+....+.-|+|++.-
T Consensus 290 ~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 290 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 333333222 2477888888889888873
No 183
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=31.70 E-value=1.3e+02 Score=21.32 Aligned_cols=32 Identities=13% Similarity=0.028 Sum_probs=18.4
Q ss_pred hhhhHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q 015150 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAP 329 (412)
Q Consensus 298 ~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~ 329 (412)
.+.+...+.+.+.......|...+..+..+..
T Consensus 37 a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ 68 (135)
T 4fu3_A 37 AGPIVSVWHRELRKAKSNRKLTFLYLANDVIQ 68 (135)
T ss_dssp HHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 44555555555554444556666666666643
No 184
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=31.10 E-value=3e+02 Score=24.89 Aligned_cols=143 Identities=11% Similarity=0.168 Sum_probs=81.1
Q ss_pred HhhHHHHHHhhccc------ChHHHHHHHHHHHHHHHhhchhhHHhhH-HHHHHHHhcCCCchHHHHHHHHhhHHHhhhC
Q 015150 182 EQLLPIFLSLLKDE------FPDVRLNIISKLDQVNQVIGIDLLSQSL-LPAIVELAEDRHWRVRLAIIEYIPLLASQLG 254 (412)
Q Consensus 182 ~~l~~~l~~~l~d~------~~~vr~~~~~~l~~i~~~~~~~~~~~~~-~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 254 (412)
+.+++.+.+.+.++ |++- .+.-+..+......+.+.+.+ ...+...+.+.+..+...+++.+. +..+
T Consensus 72 ~~ll~~Ik~iL~~~~~~~~lD~~~---Li~Ll~~il~~~~Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~---~s~p 145 (500)
T 3vld_A 72 KPLLATIKRFLTSNVSYDSLNYDY---LLDVVDKLVPMADFDDVLEVYSAEDLVKALRSEIDPLKVAACRVIE---NSQP 145 (500)
T ss_dssp HHHHHHHHHHHHCSSCCTTCCHHH---HHHHHHHHHHHSCHHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH---TCSS
T ss_pred HHHHHHHHHHHcCCccccccCHHH---HHHHHHHHHhcCCHHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc---ccCc
Confidence 47888888887332 2332 677778887777766554433 455667777778888888877765 3333
Q ss_pred hhhHH-HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh-----hhhhHHHHHhhhcCCchHHHHHHHHHHHHhc
Q 015150 255 VGFFD-DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA-----MQHIVPQVLEMINNPHYLYRMTILQAISLLA 328 (412)
Q Consensus 255 ~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~ 328 (412)
.+.+. ..++..+++.+-|++..+- ..+..+..+...+..+.+ .+..+|.+...-+..+...-...+..+..+.
T Consensus 146 k~lfa~t~iidiLL~lyFd~~t~i~-~vvn~IE~~~~~LssdeLirrril~nnl~lL~~vK~~~~~i~~sRLLdll~il~ 224 (500)
T 3vld_A 146 KGLFATSNIIDILLDILFDEKVEND-KLITAIEKALERLSTDELIRRRLFDNNLPYLVSVKGRMETVSFVRLIDFLTIEF 224 (500)
T ss_dssp GGGGTTSSHHHHHHHHHTCTTCCCH-HHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hhHhccChHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHcCchHHHHHHHHHHhHHHHHHHhcCCCceeHHHHHHHHHHHh
Confidence 33332 3466667777766655531 033334444444433321 2345566665555555555555666666555
Q ss_pred ccc
Q 015150 329 PVM 331 (412)
Q Consensus 329 ~~~ 331 (412)
...
T Consensus 225 ~~i 227 (500)
T 3vld_A 225 QFI 227 (500)
T ss_dssp TTC
T ss_pred ccc
Confidence 444
No 185
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=29.95 E-value=65 Score=16.86 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=20.4
Q ss_pred hHHHHHHhhcCCCCccHHHHHHHHHH
Q 015150 378 SIRPCLVELSEDPDVDVRFFATQALQ 403 (412)
Q Consensus 378 ~i~~~l~~l~~d~~~~vr~~a~~al~ 403 (412)
.+...++++-.+.|.+.|+...+++.
T Consensus 7 ~l~~~fk~iY~~gddd~kram~KS~~ 32 (35)
T 2jtt_C 7 GLMNVLKKIYEDGDDDMKRTINKAWV 32 (35)
T ss_dssp SHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 46677778888889999988887764
No 186
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=28.89 E-value=1.6e+02 Score=23.82 Aligned_cols=97 Identities=8% Similarity=0.073 Sum_probs=53.8
Q ss_pred CCchHHHHHHHHHHHHhcccc--chhHH-----HHhhHHHHHhhcCC----CCchHHHHHHHHHHHHhhhhchH----HH
Q 015150 311 NPHYLYRMTILQAISLLAPVM--GSEIT-----CSQLLPVVINASKD----RVPNIKFNVAKVLQSLIPIVDQS----VV 375 (412)
Q Consensus 311 ~~~~~~r~~~~~~l~~l~~~~--~~~~~-----~~~il~~l~~~l~d----~~~~vR~~~~~~l~~l~~~~~~~----~~ 375 (412)
+.++..+..+++++..+...- |..-+ ...++..+...+.| ++.++|.+++..+-+++-....+ ..
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~ 180 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 180 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHH
Confidence 345667788888887774322 22211 22233333333333 36788988888888776543221 11
Q ss_pred HhhHHHHHHhhcC-----CCCccHHHHHHHHHHHhHH
Q 015150 376 EKSIRPCLVELSE-----DPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 376 ~~~i~~~l~~l~~-----d~~~~vr~~a~~al~~~~~ 407 (412)
...+...+..... ..|.|....+.-|+|++.-
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 2234444443211 2377888899999998873
No 187
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=28.79 E-value=63 Score=23.07 Aligned_cols=33 Identities=21% Similarity=0.054 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCC
Q 015150 354 NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSED 389 (412)
Q Consensus 354 ~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d 389 (412)
..|....+.+..+-.. ..|.+.++..|...+++
T Consensus 99 ~~k~kl~kll~iW~~r---~vf~~~~i~~L~~~l~~ 131 (135)
T 4fu3_A 99 GCKKPLERLLNIWQER---SVYGGEFIQQLKLSMED 131 (135)
T ss_dssp TSSHHHHHHHHHHHHT---TSSCHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhcCC---CCcCHHHHHHHHHHHhC
Confidence 4555666666655431 12334555555554433
No 188
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=27.16 E-value=1.7e+02 Score=20.69 Aligned_cols=96 Identities=9% Similarity=0.038 Sum_probs=54.3
Q ss_pred HHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch---HHHHh--
Q 015150 303 PQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEK-- 377 (412)
Q Consensus 303 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~-- 377 (412)
...+..++.....+...+..++...- ..+.+...+.+.+....++-|...+-.+..+.+..+. ..+..
T Consensus 11 ~~~L~~L~~s~~sI~~~s~w~l~h~~-------~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f 83 (132)
T 4flb_A 11 DRKFQSVTNTMESIQGLSSWCIENKK-------HHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESF 83 (132)
T ss_dssp HHHHHHCCSSHHHHHHHHHHHHHTGG-------GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHH
T ss_pred HHHHHHCcccHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 33344455555666666666665432 2445666666666666777888888888888765432 12322
Q ss_pred -hHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150 378 -SIRPCLVELSEDPDVDVRFFATQALQSKDQ 407 (412)
Q Consensus 378 -~i~~~l~~l~~d~~~~vr~~a~~al~~~~~ 407 (412)
.++|.+..... +++.|....+.+..+-+
T Consensus 84 ~~~l~~~~~~~~--~~~~~~kl~~ll~iW~~ 112 (132)
T 4flb_A 84 ADVLPEAAALVK--DPSVSKSVERIFKIWED 112 (132)
T ss_dssp HTTHHHHHHTTC--STTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CHHHHHHHHHHHHHhcc
Confidence 23333333222 45667777777766543
No 189
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=26.25 E-value=3e+02 Score=23.29 Aligned_cols=96 Identities=17% Similarity=0.292 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHhhC-HHHHHHhhhhhHHHh-ccC--------CcHHHHHHHHHHHHhcCcccChhH--HHHhhHH
Q 015150 119 AEVRIAAAGKVTKICRILN-PELAIQHILPCVKEL-SSD--------SSQHVRSALATVIMGMAPILGKDA--TIEQLLP 186 (412)
Q Consensus 119 ~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~~-~~d--------~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~ 186 (412)
-.||+..++.+..+.+... .+...+.++|.+... +.| .+++|-......+..+...+.+.. +.+.+..
T Consensus 43 R~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe 122 (321)
T 1w9c_A 43 RTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFE 122 (321)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6788888888888776654 456678888888764 454 245555555555666655544432 2244555
Q ss_pred HHHHhhcc---cChHHHHHHHHHHHHHHHhh
Q 015150 187 IFLSLLKD---EFPDVRLNIISKLDQVNQVI 214 (412)
Q Consensus 187 ~l~~~l~d---~~~~vr~~~~~~l~~i~~~~ 214 (412)
.-..++++ +.|+.|..-.+-|..+....
T Consensus 123 ~TL~MI~~df~eyPehR~~Ff~LL~ai~~~c 153 (321)
T 1w9c_A 123 CTLNMINKDFEEYPEHRTNFFLLLQAVNSHC 153 (321)
T ss_dssp HHHHHHSSTTTCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHh
Confidence 55667764 57999999999888887653
No 190
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=25.47 E-value=3.8e+02 Score=24.21 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHhChhh-hhh--hhHHHHHhhhcCCchHHHHHHHHHHHHh
Q 015150 274 VYSIRDAAANNVKRLAEEFGPDW-AMQ--HIVPQVLEMINNPHYLYRMTILQAISLL 327 (412)
Q Consensus 274 ~~~vr~~a~~~l~~l~~~~~~~~-~~~--~~l~~l~~~~~~~~~~~r~~~~~~l~~l 327 (412)
++.+..-|+.-+|.+++..+..- ..+ ..-..+++++.+++..||..|+.+++.+
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45566666667777776553210 000 1223445555555555555555555544
No 191
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=23.89 E-value=4.5e+02 Score=24.56 Aligned_cols=105 Identities=10% Similarity=0.046 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhh---------hhhHHHHHh-hhcCCchHHHHHHHHHHHHhc
Q 015150 259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM---------QHIVPQVLE-MINNPHYLYRMTILQAISLLA 328 (412)
Q Consensus 259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---------~~~l~~l~~-~~~~~~~~~r~~~~~~l~~l~ 328 (412)
.+.-++++..++++....+...++..+..+...++...+. ..+...+.. ....++...|..+..+++.+.
T Consensus 315 f~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I 394 (596)
T 4f52_E 315 LQFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYI 394 (596)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHH
Confidence 3445667777888888888888888888887766543211 112222222 234678899999999999998
Q ss_pred cccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150 329 PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 366 (412)
Q Consensus 329 ~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l 366 (412)
..++.+ -.-.++..+++- ...+.++..++..+..-
T Consensus 395 ~~~~~e-~R~~iL~~LL~~--~~~~~v~~~lI~~~Kde 429 (596)
T 4f52_E 395 NKLDSQ-GKYTLFRCLLNT--SNHSGVEAFIIQNIKNQ 429 (596)
T ss_dssp HHBCHH-HHHHHHHHHHHH--HCCHHHHHHHHHHHHHH
T ss_pred HhCChH-HHHHHHHHHHhc--CCChHHHHHHHHHHHHH
Confidence 888765 344555555553 35667777777777543
No 192
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=23.44 E-value=4.1e+02 Score=24.00 Aligned_cols=147 Identities=14% Similarity=0.155 Sum_probs=84.6
Q ss_pred cccchHHHHHHhc-CC-ChH--HHHHHHHHHHHHHHHhhCHHHHHHh-hhhhHHHhccCCcHHHHHHHHHHHHhcCcccC
Q 015150 102 TRSDVVPAYVRLL-RD-NEA--EVRIAAAGKVTKICRILNPELAIQH-ILPCVKELSSDSSQHVRSALATVIMGMAPILG 176 (412)
Q Consensus 102 ~~~~l~~~l~~~l-~d-~~~--~vr~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 176 (412)
....+++.+.+.+ ++ +.. .--. .+..+.++...++-+.+.+. =+..+.+.++..++.+..++|..+.. .-+
T Consensus 70 ~~~~ll~~Ik~iL~~~~~~~~lD~~~-Li~Ll~~il~~~~Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~~---s~p 145 (500)
T 3vld_A 70 DVKPLLATIKRFLTSNVSYDSLNYDY-LLDVVDKLVPMADFDDVLEVYSAEDLVKALRSEIDPLKVAACRVIEN---SQP 145 (500)
T ss_dssp CCHHHHHHHHHHHHCSSCCTTCCHHH-HHHHHHHHHHHSCHHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHHT---CSS
T ss_pred cHHHHHHHHHHHHcCCccccccCHHH-HHHHHHHHHhcCCHHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhcc---cCc
Confidence 4567888888887 43 111 1122 77777888777777655443 34556666766788888888888772 222
Q ss_pred hhHHH-HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhh-----HHhhHHHHHHHHhcCCCchHHHHHHHHhhHHH
Q 015150 177 KDATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 250 (412)
Q Consensus 177 ~~~~~-~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~-----~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~ 250 (412)
++.+. ..++..+.++.-|++..+ ...+++++.....+..+. +...-+|.+...-+..++..-.-.+..+..+.
T Consensus 146 k~lfa~t~iidiLL~lyFd~~t~i-~~vvn~IE~~~~~LssdeLirrril~nnl~lL~~vK~~~~~i~~sRLLdll~il~ 224 (500)
T 3vld_A 146 KGLFATSNIIDILLDILFDEKVEN-DKLITAIEKALERLSTDELIRRRLFDNNLPYLVSVKGRMETVSFVRLIDFLTIEF 224 (500)
T ss_dssp GGGGTTSSHHHHHHHHHTCTTCCC-HHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hhHhccChHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCchHHHHHHHHHHhHHHHHHHhcCCCceeHHHHHHHHHHHh
Confidence 22222 356667777766655443 114455555544444332 22345677776665566555555555555555
Q ss_pred hhh
Q 015150 251 SQL 253 (412)
Q Consensus 251 ~~~ 253 (412)
...
T Consensus 225 ~~i 227 (500)
T 3vld_A 225 QFI 227 (500)
T ss_dssp TTC
T ss_pred ccc
Confidence 444
Done!