BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015151
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X3M|A Chain A, Crystal Structure Of Hypothetical Protein Orf239 From
Pyrobaculum Spherical Virus
Length = 239
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 62 HSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILR----EHGFSDKHISKLVK 117
+ +T TYL ++ + PD+A +L++ + + D V S+L H ++D ++++
Sbjct: 94 YWYTRTYLEEAKDIRPDIADALARGMAGLAFGRTDWVASMLDPQIMRHIYTDPEVARIYS 153
Query: 118 KCPDLLVRRADKTL-LPKLEFFASVGISGTALADVLSSNPAILGRSLKKQI 167
+ D+L R +D + L +E I A A NP ++ R + + +
Sbjct: 154 ETRDMLRRVSDYYISLTTMELGKVADI--IAEAKAKGENPEVVAREIAEAV 202
>pdb|2P31|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 7
pdb|2P31|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 7
Length = 181
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 39/139 (28%)
Query: 97 LVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEF------------------- 137
LV+++ E GF+D+H L + DL + P +F
Sbjct: 53 LVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTY 112
Query: 138 ------FASVGISGTALADVLSSNPAI--LGRSLKKQIIPSYKFLKSLLSDDAKIVGALK 189
F+ + ++GT ++PA L ++ K+ P++ F K L++ D K+VGA
Sbjct: 113 SVSFPMFSKIAVTGTG------AHPAFKYLAQTSGKE--PTWNFWKYLVAPDGKVVGAWD 164
Query: 190 RAAYLHDVEKYISPNISAL 208
+ +V P I+AL
Sbjct: 165 PTVSVEEVR----PQITAL 179
>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Termination Factor 3
Length = 270
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 196 DVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVF 255
D EK I + L+D+G+ + + + + N + E V + FS +
Sbjct: 36 DFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKAD--- 92
Query: 256 VHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKK-------YPRCMTLSVENINAK 308
V +V + +++ + G+ Q E L+ KK PR +T S+E +
Sbjct: 93 VAQMVRKAPFLLNFSVERLD--NRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKEN 150
Query: 309 MDFYINQMGWQPSAVARVAT 328
M Y ++G++ + + + T
Sbjct: 151 MKVYRLELGFKHNEIQHMIT 170
>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Termination Factor 3
Length = 298
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 196 DVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVF 255
D EK I + L+D+G+ + + + + N + E V + FS +
Sbjct: 64 DFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKAD--- 120
Query: 256 VHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKK-------YPRCMTLSVENINAK 308
V +V + +++ + G+ Q E L+ KK PR +T S+E +
Sbjct: 121 VAQMVRKAPFLLNFSVERLD--NRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKEN 178
Query: 309 MDFYINQMGWQPSAVARVAT 328
M Y ++G++ + + + T
Sbjct: 179 MKVYRLELGFKHNEIQHMIT 198
>pdb|3N6S|A Chain A, Crystal Structure Of Human Mitochondrial Mterf In Complex
With A 15- Mer Dna Encompassing The Trnaleu(Uur) Binding
Sequence
Length = 353
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 137 FFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAA---Y 193
F S G S +A ++S P + R+ + + + + +++ D +IV L+R+ +
Sbjct: 58 FLLSKGASKEVIASIISRYPRAITRT-PENLSKRWDLWRKIVTSDLEIVNILERSPESFF 116
Query: 194 LHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFD 237
+ + NI L +G+T+ C+ L+ + P SN D
Sbjct: 117 RSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTF---SNSLD 157
>pdb|3MVA|O Chain O, Crystal Structure Of Human Mterf1 Bound To The Termination
Sequence
Length = 343
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 137 FFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAA---Y 193
F S G S +A ++S P + R+ + + + + +++ D +IV L+R+ +
Sbjct: 57 FLLSKGASKEVIASIISRYPRAITRT-PENLSKRWDLWRKIVTSDLEIVNILERSPESFF 115
Query: 194 LHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFD 237
+ + NI L +G+T+ C+ L+ + P SN D
Sbjct: 116 RSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTF---SNSLD 156
>pdb|3N7Q|A Chain A, Crystal Structure Of Human Mitochondrial Mterf Fragment
(Aa 99-399) In Complex With A 12-Mer Dna Encompassing
The Trnaleu(Uur) Binding Sequence
Length = 310
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 137 FFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAA---Y 193
F S G S +A ++S P + R+ + + + + +++ D +IV L+R+ +
Sbjct: 15 FLLSKGASKEVIASIISRYPRAITRT-PENLSKRWDLWRKIVTSDLEIVNILERSPESFF 73
Query: 194 LHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFD 237
+ + NI L +G+T+ C+ L+ + P SN D
Sbjct: 74 RSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTF---SNSLD 114
>pdb|1GNT|A Chain A, Hybrid Cluster Protein From Desulfovibrio Vulgaris. X-Ray
Structure At 1.25a Resolution Using Synchrotron
Radiation.
pdb|1OA1|A Chain A, Reduced Hybrid Cluster Protein (Hcp) From Desulfovibrio
Vulgaris Hildenborough Structure At 1.55a Resolution
Using Synchrotron Radiation
Length = 553
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 28/168 (16%)
Query: 140 SVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEK 199
SVGI T DV RSL++ +I K + + ++ A ++G K ++++
Sbjct: 133 SVGILATENEDV---------RSLRELLIIGLKGVAAY-AEHAAVLGFRKT-----EIDE 177
Query: 200 YISPNI-SALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRV--------IHMGFSP 250
++ + S +D+ V + + +LV+ G+ T DE+ +++G
Sbjct: 178 FMLEALASTTKDLSVDE--MVALVMKAGGMAVTTMALLDEANTTTYGNPEITQVNIGVGK 235
Query: 251 SSGVFV--HALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPR 296
+ G+ + H L ++ QT V VY+ ++ AFKKYP
Sbjct: 236 NPGILISGHDLKDMAELLKQTEGTGVDVYTHGEMLPANYYPAFKKYPH 283
>pdb|1E2U|A Chain A, Low Temperature Stucture Of Hybrid Cluster Protein From
Desulfovibrio Vulgaris To 1.6a
pdb|1E9V|A Chain A, Xenon Bound In Hydrophobic Channel Of Hybrid Cluster
Protein From Desulfovibrio Vulgaris
pdb|1W9M|A Chain A, As-Isolated Hybrid Cluster Protein From Desulfovibrio
Vulgaris X-Ray Structure At 1.35a Resolution Using Iron
Anomalous Signal
Length = 553
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 28/168 (16%)
Query: 140 SVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEK 199
SVGI T DV RSL++ +I K + + ++ A ++G K ++++
Sbjct: 133 SVGILATENEDV---------RSLRELLIIGLKGVAAY-AEHAAVLGFRKT-----EIDE 177
Query: 200 YISPNI-SALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRV--------IHMGFSP 250
++ + S +D+ V + + +LV+ G+ T DE+ +++G
Sbjct: 178 FMLEALASTTKDLSVDE--MVALVMKAGGMAVTTMALLDEANTTTYGNPEITQVNIGVGK 235
Query: 251 SSGVFV--HALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPR 296
+ G+ + H L ++ QT V VY+ ++ AFKKYP
Sbjct: 236 NPGILISGHDLKDMAELLKQTEGTGVDVYTHGEMLPANYYPAFKKYPH 283
>pdb|3QE9|Y Chain Y, Crystal Structure Of Human Exonuclease 1 Exo1 (D173a) In
Complex With Dna (Complex I)
pdb|3QE9|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (D173a) In
Complex With Dna (Complex I)
Length = 352
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 15/123 (12%)
Query: 151 VLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNI----- 205
+++ + A+L KK I+ +F L D A++ G ++ + EK+ I
Sbjct: 167 IITEDSALLAFGCKKVILKMDQFGNGLEIDQARL-GMCRQLGDVFTEEKFRYMCILSGCD 225
Query: 206 --SALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHM------GFSPSSGVFVH 257
S+LR IG+ K+C + +NP ++ + K +K I + GF ++ F++
Sbjct: 226 YLSSLRGIGLAKACKVLRLANNPDIV-KVIKKIGHYLKMNITVPEDYINGFIRANNTFLY 284
Query: 258 ALV 260
LV
Sbjct: 285 QLV 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,578,720
Number of Sequences: 62578
Number of extensions: 454730
Number of successful extensions: 1150
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1147
Number of HSP's gapped (non-prelim): 21
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)