BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015151
(412 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 87/241 (36%), Gaps = 36/241 (14%)
Query: 98 VLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPA 157
L+ L G + K K LL +K + L F VGI L L+ NP
Sbjct: 143 TLTKLVHLGVDLSQVEKRQKAGQLLLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPY 202
Query: 158 ILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAY--LHDVEKYISPNISALRDIGVTK 215
ILG L+ + +LKS +A+I + RA Y L VE+ + ++G++
Sbjct: 203 ILGEELEA-LETRVAYLKSKKFGNAEITQMVSRAPYLLLFSVERLDNRLGFFKNELGLSV 261
Query: 216 SCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVA 275
LVI P +L E+++ V + F
Sbjct: 262 KKTKDLVIRFPRLLTGKLEPVKENLQ-VCQVEF--------------------------- 293
Query: 276 VYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLK 335
G+ +NE K P+ +T S + + D+ N MG + + R V L
Sbjct: 294 -----GFERNEVQQIAFKTPKILTASKKRLRQTFDYLHNIMGIPHNMLTRFPQVFNSKLL 348
Query: 336 R 336
R
Sbjct: 349 R 349
>sp|O60443|DFNA5_HUMAN Non-syndromic hearing impairment protein 5 OS=Homo sapiens GN=DFNA5
PE=1 SV=2
Length = 496
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 146 TALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAY--LHDVEKY-IS 202
+ALA++ S A+LG K QIIP+ L LSDD V L+ L D E++ I
Sbjct: 391 SALAEMPDSAAALLGTCCKLQIIPTLCHLLRALSDDG--VSDLEDPTLTPLKDTERFGIV 448
Query: 203 PNISALRDIGVT--KSCISSLVISN----PGVLCETSN 234
+ A DI + KS + ++++ + P +LC T N
Sbjct: 449 QRLFASADISLERLKSSVKAVILKDSKVFPLLLCITLN 486
>sp|Q7MW49|SYL_PORGI Leucine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=leuS PE=3 SV=1
Length = 925
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 347 VLQLKDLIKE--------NFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIELSE 398
+ Q K+ I+E N+ L + S Y+ + F Y+E +P LD R + L E
Sbjct: 455 IAQTKEYIREKHLGCVKVNYRLRDAIFSRQRYWGEPFPIYYKEGMPHALDEDRLPLRLPE 514
Query: 399 LGIEFEQNSGEKQL 412
+ SGE L
Sbjct: 515 VDKFLPTESGEPPL 528
>sp|B2RIZ3|SYL_PORG3 Leucine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC 33277
/ DSM 20709 / JCM 12257) GN=leuS PE=3 SV=1
Length = 925
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 347 VLQLKDLIKE--------NFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIELSE 398
+ Q K+ I+E N+ L + S Y+ + F Y+E +P LD R + L E
Sbjct: 455 IAQTKEYIREKHLGCVKVNYRLRDAIFSRQRYWGEPFPIYYKEGMPHALDEDRLPLRLPE 514
Query: 399 LGIEFEQNSGEKQL 412
+ SGE L
Sbjct: 515 VDKFLPTESGEPPL 528
>sp|Q2S304|CINAL_SALRD CinA-like protein OS=Salinibacter ruber (strain DSM 13855 / M31)
GN=SRU_1303 PE=3 SV=1
Length = 412
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 27/204 (13%)
Query: 75 LPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPK 134
+PP A + FET + P + ++ H D + L+ P+ + + ++ P+
Sbjct: 110 VPPSAPALAQRPEGFETLDNP-VGAAVGLWHEAPDGRLIVLLPGIPEEMTAIFEASVQPR 168
Query: 135 LEFFASVG-----------ISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAK 183
LE + VG I TAL + L +LG + +PS ++ LS DA+
Sbjct: 169 LEEQSGVGEVRHRTLVTAGIGETALQEKLGDLSDVLGDDVSLAYLPSTSGVRLRLSADAR 228
Query: 184 IVGALKRAAYLHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRV 243
A A L VE I A DI I + ++ VL + D +
Sbjct: 229 QTTA---GARLDTVEAAIRER--AGDDI------IGTGDVTLEAVLGDALRARDAT---- 273
Query: 244 IHMGFSPSSGVFVHALVAVSTTTD 267
I S + G+ H L VS ++D
Sbjct: 274 IASAESATGGLIGHRLTGVSGSSD 297
>sp|Q1WTK3|SCPB_LACS1 Segregation and condensation protein B OS=Lactobacillus salivarius
(strain UCC118) GN=scpB PE=3 SV=1
Length = 196
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 337 RIIPRCSVIRVLQLKDLIKENFSLSS----VVISSDEYFTDAFVTKYQEQVPQLLDIFRG 392
R + S+I+ LQL +LIKEN L + ++ + + F D F + +Q+P+ LD +
Sbjct: 114 RGVQSSSMIQRLQLLELIKENGRLDAPGRPILYVTTDKFLDYFGLESLDQLPE-LDEEKQ 172
Query: 393 KIELSELGIEFEQNSG 408
+ E +L FEQ +G
Sbjct: 173 EDEEMDLMTLFEQTTG 188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,351,299
Number of Sequences: 539616
Number of extensions: 5828696
Number of successful extensions: 16460
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 16456
Number of HSP's gapped (non-prelim): 22
length of query: 412
length of database: 191,569,459
effective HSP length: 120
effective length of query: 292
effective length of database: 126,815,539
effective search space: 37030137388
effective search space used: 37030137388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)