Query 015151
Match_columns 412
No_of_seqs 212 out of 1237
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 07:35:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 5.1E-55 1.7E-59 433.4 20.3 309 58-377 15-341 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 1.6E-48 5.3E-53 374.6 14.3 255 95-386 5-266 (270)
3 4fp9_B Mterf domain-containing 100.0 8E-36 2.7E-40 292.5 16.7 220 132-395 47-279 (335)
4 3mva_O Transcription terminati 100.0 2.9E-35 1E-39 291.5 15.9 276 91-375 15-310 (343)
5 3m66_A Mterf3, mterf domain-co 100.0 9.4E-33 3.2E-37 264.7 15.3 210 63-314 6-224 (270)
6 4fp9_B Mterf domain-containing 99.9 2.4E-25 8.3E-30 218.1 16.5 179 94-318 45-227 (335)
7 4fzv_B Mterf domain-containing 99.2 6.2E-11 2.1E-15 100.1 12.3 189 166-390 32-229 (239)
8 4fzv_B Mterf domain-containing 98.0 5.6E-05 1.9E-09 63.9 10.5 148 95-318 33-182 (239)
9 4ae4_A Ubiquitin-associated pr 90.5 1.2 4.2E-05 36.2 8.4 83 64-155 10-100 (118)
10 1oqy_A HHR23A, UV excision rep 89.6 0.52 1.8E-05 46.2 6.5 25 93-117 166-190 (368)
11 3ff5_A PEX14P, peroxisomal bio 87.3 1.2 4.2E-05 30.9 5.2 34 117-154 20-53 (54)
12 1oqy_A HHR23A, UV excision rep 85.8 0.59 2E-05 45.8 4.2 34 65-103 171-204 (368)
13 4ae4_A Ubiquitin-associated pr 83.5 9.4 0.00032 30.9 9.8 98 97-210 10-113 (118)
14 3ugm_A TAL effector avrbs3/PTH 80.5 0.86 2.9E-05 47.7 3.0 16 69-84 351-366 (1047)
15 3ugm_A TAL effector avrbs3/PTH 79.2 0.34 1.2E-05 50.6 -0.4 16 140-155 489-504 (1047)
16 3ff5_A PEX14P, peroxisomal bio 78.9 2.3 7.7E-05 29.6 3.8 26 269-294 29-54 (54)
17 2w84_A Peroxisomal membrane pr 78.9 3.5 0.00012 30.1 5.0 34 118-155 26-59 (70)
18 1ify_A HHR23A, UV excision rep 69.9 6.1 0.00021 26.6 4.2 39 269-314 7-45 (49)
19 2ooa_A E3 ubiquitin-protein li 68.8 4.7 0.00016 27.6 3.3 42 61-107 10-51 (52)
20 2cos_A Serine/threonine protei 68.6 2.5 8.4E-05 29.2 1.9 14 237-250 10-23 (54)
21 2w84_A Peroxisomal membrane pr 68.2 5.3 0.00018 29.2 3.7 26 269-294 34-59 (70)
22 2g3q_A Protein YBL047C; endocy 67.7 4.1 0.00014 26.5 2.9 24 271-294 5-28 (43)
23 4hpz_A Dtale2; DNA binding pro 67.1 25 0.00085 34.2 9.1 235 71-324 9-250 (463)
24 2knz_A Ubiquilin-4; cytoplasm, 64.7 6.8 0.00023 26.8 3.6 41 267-314 8-49 (53)
25 2ekk_A UBA domain from E3 ubiq 63.7 7.4 0.00025 25.8 3.6 36 271-314 10-45 (47)
26 1z96_A DNA-damage, UBA-domain 63.0 8.4 0.00029 24.3 3.7 24 271-294 5-28 (40)
27 2dak_A Ubiquitin carboxyl-term 61.8 12 0.00041 26.5 4.6 39 271-316 10-48 (63)
28 2ooa_A E3 ubiquitin-protein li 61.3 6.5 0.00022 26.9 2.9 24 269-292 10-33 (52)
29 2cos_A Serine/threonine protei 59.7 13 0.00045 25.6 4.2 42 96-144 10-51 (54)
30 1veg_A NEDD8 ultimate buster-1 59.0 14 0.00048 27.9 4.7 40 271-317 30-69 (83)
31 1wji_A Tudor domain containing 58.0 9.4 0.00032 27.2 3.5 38 271-315 10-47 (63)
32 3idw_A Actin cytoskeleton-regu 57.4 12 0.00042 27.4 4.0 50 67-117 7-59 (72)
33 1vg5_A RSGI RUH-014, rhomboid 56.2 8 0.00027 28.5 2.9 38 270-314 29-66 (73)
34 3idw_A Actin cytoskeleton-regu 54.0 21 0.00072 26.1 4.8 17 172-188 42-58 (72)
35 2oo9_A E3 ubiquitin-protein li 53.3 13 0.00045 24.6 3.2 24 269-292 3-26 (46)
36 2d9s_A CBL E3 ubiquitin protei 52.9 14 0.00049 25.3 3.5 22 271-292 10-31 (53)
37 2jy5_A Ubiquilin-1; UBA, alter 52.5 11 0.00037 25.7 2.9 25 268-292 10-35 (52)
38 2cpw_A CBL-interacting protein 52.2 14 0.00049 26.3 3.7 38 272-315 21-58 (64)
39 2dag_A Ubiquitin carboxyl-term 51.3 20 0.0007 26.3 4.5 41 271-317 10-50 (74)
40 2jy5_A Ubiquilin-1; UBA, alter 49.6 31 0.0011 23.3 4.9 17 234-250 10-27 (52)
41 1wiv_A UBP14, ubiquitin-specif 49.1 15 0.00053 26.9 3.5 38 271-315 30-67 (73)
42 2juj_A E3 ubiquitin-protein li 49.0 18 0.00062 24.9 3.5 24 269-292 6-29 (56)
43 2cp8_A NEXT to BRCA1 gene 1 pr 48.3 26 0.00089 24.2 4.3 17 234-250 7-23 (54)
44 1wgn_A UBAP1, ubiquitin associ 48.1 8.1 0.00028 27.4 1.7 37 64-105 21-57 (63)
45 1wgn_A UBAP1, ubiquitin associ 46.2 27 0.00094 24.7 4.2 39 271-316 20-58 (63)
46 4hpz_A Dtale2; DNA binding pro 45.4 69 0.0024 31.1 8.2 204 68-292 35-254 (463)
47 2dai_A Ubadc1, ubiquitin assoc 44.9 38 0.0013 25.4 5.2 39 272-317 31-69 (83)
48 1ify_A HHR23A, UV excision rep 43.0 41 0.0014 22.3 4.7 21 170-190 11-31 (49)
49 2bwb_A Ubiquitin-like protein 43.0 27 0.00091 23.1 3.6 26 267-292 4-30 (46)
50 1dv0_A DNA repair protein HHR2 42.9 9.2 0.00031 25.5 1.3 23 272-294 6-28 (47)
51 1wr1_B Ubiquitin-like protein 41.9 25 0.00085 24.6 3.5 41 267-314 14-55 (58)
52 1uxc_A FRUR (1-57), fructose r 41.7 23 0.0008 25.1 3.4 43 209-251 8-50 (65)
53 2crn_A Ubash3A protein; compac 41.3 31 0.0011 24.5 4.0 38 273-316 12-49 (64)
54 2knz_A Ubiquilin-4; cytoplasm, 40.4 31 0.0011 23.4 3.8 24 167-190 11-35 (53)
55 2d9s_A CBL E3 ubiquitin protei 39.8 27 0.00093 23.9 3.2 41 60-105 7-47 (53)
56 1whc_A RSGI RUH-027, UBA/UBX 3 37.9 35 0.0012 24.2 3.8 39 273-317 12-50 (64)
57 1vg5_A RSGI RUH-014, rhomboid 37.3 64 0.0022 23.6 5.3 37 63-104 30-66 (73)
58 2crn_A Ubash3A protein; compac 36.6 35 0.0012 24.2 3.7 42 61-106 8-49 (64)
59 2dak_A Ubiquitin carboxyl-term 36.6 32 0.0011 24.2 3.4 40 60-104 7-46 (63)
60 1wj7_A Hypothetical protein (R 36.4 39 0.0014 26.5 4.2 42 266-314 35-77 (104)
61 1vek_A UBP14, ubiquitin-specif 36.3 59 0.002 24.4 5.1 40 271-316 30-69 (84)
62 2l8n_A Transcriptional repress 35.2 40 0.0014 24.0 3.8 45 205-252 12-57 (67)
63 1wiv_A UBP14, ubiquitin-specif 34.7 40 0.0014 24.6 3.8 41 61-106 28-68 (73)
64 1whc_A RSGI RUH-027, UBA/UBX 3 33.6 47 0.0016 23.5 3.9 42 60-105 7-48 (64)
65 1vej_A Riken cDNA 4931431F19; 33.3 28 0.00097 25.6 2.7 24 269-292 28-52 (74)
66 2v79_A DNA replication protein 33.1 26 0.00088 28.8 2.8 56 95-154 18-74 (135)
67 2o71_A Death domain-containing 30.8 65 0.0022 25.6 4.8 17 140-156 44-60 (115)
68 1veg_A NEDD8 ultimate buster-1 30.0 41 0.0014 25.3 3.2 37 63-104 30-66 (83)
69 2dkl_A Trinucleotide repeat co 29.7 46 0.0016 25.1 3.5 39 271-316 22-60 (85)
70 2ef8_A C.ECOT38IS, putative tr 29.5 1.1E+02 0.0037 21.6 5.7 56 270-325 11-75 (84)
71 2dah_A Ubiquilin-3; UBA domain 29.5 75 0.0026 21.6 4.3 40 166-211 8-48 (54)
72 1wji_A Tudor domain containing 28.4 1.2E+02 0.004 21.3 5.3 37 63-104 10-46 (63)
73 2csb_A Topoisomerase V, TOP61; 27.0 3.7E+02 0.013 24.7 9.8 53 166-221 462-515 (519)
74 2of5_A Death domain-containing 26.1 83 0.0028 24.9 4.6 17 140-156 44-60 (114)
75 1ixs_A Holliday junction DNA h 25.8 64 0.0022 22.6 3.5 24 95-118 17-40 (62)
76 3e3v_A Regulatory protein RECX 25.4 3.1E+02 0.01 23.2 10.9 81 206-293 26-109 (177)
77 2dna_A Unnamed protein product 25.2 51 0.0017 23.7 2.8 41 267-314 16-57 (67)
78 1q08_A Zn(II)-responsive regul 24.5 65 0.0022 24.2 3.7 24 270-293 5-28 (99)
79 3k9o_A Ubiquitin-conjugating e 24.3 63 0.0022 28.2 4.0 27 268-294 161-187 (201)
80 2dai_A Ubadc1, ubiquitin assoc 24.2 63 0.0022 24.2 3.3 40 61-105 28-67 (83)
81 2xzm_O RPS13E; ribosome, trans 24.0 1.3E+02 0.0044 25.2 5.4 36 119-155 24-59 (153)
82 1ixs_A Holliday junction DNA h 23.3 94 0.0032 21.8 4.0 26 269-294 16-41 (62)
83 1g6u_A Domain swapped dimer; d 22.7 1.2E+02 0.0042 19.3 3.9 22 269-290 4-25 (48)
84 1b0n_B Protein (SINI protein); 22.1 1.1E+02 0.0037 21.3 3.9 24 270-293 15-38 (57)
85 3q8k_A Flap endonuclease 1; he 21.6 1.2E+02 0.0042 28.8 5.7 46 136-194 210-255 (341)
86 3u5c_N S27A, YS15, 40S ribosom 21.5 1.2E+02 0.0043 25.3 4.9 36 119-155 22-57 (151)
87 1hmj_A RPB5, protein (subunit 21.0 34 0.0012 25.5 1.2 47 95-157 17-63 (78)
88 2xzm_O RPS13E; ribosome, trans 20.8 3.7E+02 0.013 22.4 8.0 73 141-215 11-84 (153)
89 3dfg_A Xcrecx, regulatory prot 20.4 3.7E+02 0.013 22.2 8.2 23 170-192 138-160 (162)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=5.1e-55 Score=433.40 Aligned_cols=309 Identities=15% Similarity=0.210 Sum_probs=275.4
Q ss_pred ccCCCCchHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHH
Q 015151 58 QNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEF 137 (412)
Q Consensus 58 ~~~~~~~~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~f 137 (412)
++.++..+|+|| ++||++.++|.++++++++.++++++++++||+++|++++||++++.++|.+|.++++ +|.|+++|
T Consensus 15 ~~~~~~~~v~~L-~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~f 92 (343)
T 3mva_O 15 EPLKNEDLLKNL-LTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDL 92 (343)
T ss_dssp -----CCHHHHH-HHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHH
T ss_pred CccccHHHHHHH-HHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHH
Confidence 445667888999 7999999999999999999999999999999999999999999999999999999976 79999999
Q ss_pred HHhCCCCchhHHHHhhhCCcccccccc-cchhhHHHHHHHhcCChHHHHHHHHHcccc--ccccccccchHHHHHHcCCC
Q 015151 138 FASVGISGTALADVLSSNPAILGRSLK-KQIIPSYKFLKSLLSDDAKIVGALKRAAYL--HDVEKYISPNISALRDIGVT 214 (412)
Q Consensus 138 L~~lGls~~~I~~il~~~P~lL~~sle-~~L~p~v~fL~~lg~s~~~i~~~l~~~P~l--~s~e~~l~~~v~~L~~lGv~ 214 (412)
|+++|+++++|+++|.++|++|..+.+ ++++|+++||+++|++.+++.+++.++|++ .++++. ++++++|+++|++
T Consensus 93 L~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~ 171 (343)
T 3mva_O 93 WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLS 171 (343)
T ss_dssp HTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCC
Confidence 999999999999999999995555555 489999999999999999999999999999 888765 9999999988774
Q ss_pred ------hhhhhhhcccCCcceeecccchHHHHHHHH-HcCCCCCchh--HHHHHHHHHhCChHHHHHHHHHHH----hcC
Q 015151 215 ------KSCISSLVISNPGVLCETSNKFDESVKRVI-HMGFSPSSGV--FVHALVAVSTTTDQTWKQKVAVYS----SWG 281 (412)
Q Consensus 215 ------~~~i~~ll~~~P~il~~s~~~~~~~v~~l~-~lG~~~~~~~--~~~a~~~l~~~s~~~l~~kv~~l~----~lG 281 (412)
.+.|.+++.++|.+++.+.+++++++++++ ++|+++++.. +..-.+.+...+.+.|++++.++. ++|
T Consensus 172 ~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG 251 (343)
T 3mva_O 172 LGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLG 251 (343)
T ss_dssp TTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTT
T ss_pred cCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcC
Confidence 789999999999999999889999999999 5999996532 111122345567788999987666 799
Q ss_pred CCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhcccccccCCCCceehhHHHHHHHHHcCCccCCcCcc
Q 015151 282 WSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLS 361 (412)
Q Consensus 282 ~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~mg~~~~~I~~~P~lL~~Sle~ri~pR~~~l~~L~~kGl~~~~~~l~ 361 (412)
|+++||..|+.++|++|++|+++|++|++||++ ||++.++|+++|++|+||+| ||+|||. +|.++|+ ++++.
T Consensus 252 ~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~---~L~~~g~---~~~~~ 323 (343)
T 3mva_O 252 CTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIK---ELVNAGC---NLSTL 323 (343)
T ss_dssp CCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHH---HHHTTTC---CSSSS
T ss_pred CCHHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHH---HHHHCCC---CCCCC
Confidence 999999999999999999999999999999999 99999999999999999999 9999995 6779998 66666
Q ss_pred --chhccchhHHHHHhcc
Q 015151 362 --SVVISSDEYFTDAFVT 377 (412)
Q Consensus 362 --~~l~~sd~~F~~~~v~ 377 (412)
+++++||++|.++|.+
T Consensus 324 ~~~~l~~s~~~F~~~~~~ 341 (343)
T 3mva_O 324 NITLLSWSKKRYEAKLKK 341 (343)
T ss_dssp CGGGGGSCHHHHHHHHHH
T ss_pred cchhhcCCHHHHHHHHhc
Confidence 9999999999999864
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=1.6e-48 Score=374.56 Aligned_cols=255 Identities=20% Similarity=0.301 Sum_probs=237.2
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhCCCCchhHHHHhhhCCcccccccccchhhHHHHH
Q 015151 95 PDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFL 174 (412)
Q Consensus 95 ~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~lGls~~~I~~il~~~P~lL~~sle~~L~p~v~fL 174 (412)
-.+++++|.++|++.++|.+....+|.+|.+++++++.|+++||.++|+++++|++++.++|.+|.+++++ ++|+++||
T Consensus 5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L 83 (270)
T 3m66_A 5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL 83 (270)
T ss_dssp HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence 35889999999999999987777777779999999999999999999999999999999999999999997 99999999
Q ss_pred HHhcCChHHHHHHHHHcccc--ccccccccchHHHH-HHcCCChhhhhhhcccCCcceeecccchHHHHHHHHHcCCCCC
Q 015151 175 KSLLSDDAKIVGALKRAAYL--HDVEKYISPNISAL-RDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPS 251 (412)
Q Consensus 175 ~~lg~s~~~i~~~l~~~P~l--~s~e~~l~~~v~~L-~~lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~ 251 (412)
+++|++++++.+++.++|++ .++++ +++++++| +++|++.+++.+++.++|++++.+.+
T Consensus 84 ~~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e----------------- 145 (270)
T 3m66_A 84 HSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE----------------- 145 (270)
T ss_dssp HHTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-----------------
T ss_pred HHcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-----------------
Confidence 99999999999999999999 88875 99999999 47999999999999999999998754
Q ss_pred chhHHHHHHHHHhCChHHHHHHHHHH-HhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhccccc
Q 015151 252 SGVFVHALVAVSTTTDQTWKQKVAVY-SSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVL 330 (412)
Q Consensus 252 ~~~~~~a~~~l~~~s~~~l~~kv~~l-~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~mg~~~~~I~~~P~lL 330 (412)
+++++++++ +++||+.+||.+|+.++|+++++|+++|++|++||+++||++.++|+++|.+|
T Consensus 146 -----------------~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l 208 (270)
T 3m66_A 146 -----------------PVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVF 208 (270)
T ss_dssp -----------------HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGG
T ss_pred -----------------HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHh
Confidence 467788876 48999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceehhHHHHHHHHHcCCccCC---cCccchhccchhHHHHHhcccCCCChhHH
Q 015151 331 AYSLKRRIIPRCSVIRVLQLKDLIKEN---FSLSSVVISSDEYFTDAFVTKYQEQVPQL 386 (412)
Q Consensus 331 ~~Sle~ri~pR~~~l~~L~~kGl~~~~---~~l~~~l~~sd~~F~~~~v~~~~e~~p~l 386 (412)
+||+| ||+|||.++++|.++|+.+++ +++.+++.+||++|+++|++.+.|+....
T Consensus 209 ~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey~~f 266 (270)
T 3m66_A 209 NTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKF 266 (270)
T ss_dssp GSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHHHHH
T ss_pred hCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHHHHH
Confidence 99999 999999999999999998765 67778999999999999999998775444
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=8e-36 Score=292.51 Aligned_cols=220 Identities=14% Similarity=0.177 Sum_probs=164.5
Q ss_pred HHHHHHHHhCCCCchhHHHHhhhCCcccccccccchhhHHHHHHHhcCChHHHHHHHHHcccc--ccccccccchHHHHH
Q 015151 132 LPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYL--HDVEKYISPNISALR 209 (412)
Q Consensus 132 ~p~l~fL~~lGls~~~I~~il~~~P~lL~~sle~~L~p~v~fL~~lg~s~~~i~~~l~~~P~l--~s~e~~l~~~v~~L~ 209 (412)
...+.+|.++|+++++|+++++.+|.++.. ++.+.+.||..+|++.++|.++|.++|++ .+++ +++++++||+
T Consensus 47 e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~fL~ 121 (335)
T 4fp9_B 47 ERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQ 121 (335)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHHHH
Confidence 334444444444444444444444444432 23444445555555555555555555544 4443 3777777777
Q ss_pred HcCCChhhhhhhcccCCcceeecccchHHHHHHHHHcCCCCCchhHHHHHHHHHhCChHHHHHHHHHHH-hcCCCHHHHH
Q 015151 210 DIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYS-SWGWSQNEFW 288 (412)
Q Consensus 210 ~lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~~~~~a~~~l~~~s~~~l~~kv~~l~-~lG~s~eev~ 288 (412)
++|++..+|.+++.++|++++++.+ .+++++.+|. ++|||.+||.
T Consensus 122 ~lGl~~~~i~~ll~~~P~lL~~s~e----------------------------------~i~~~v~~L~~~lGfS~~ev~ 167 (335)
T 4fp9_B 122 KLGLGEGKLKRVLYCCPEIFTMRQQ----------------------------------DINDTVRLLKEKCLFTVQQVT 167 (335)
T ss_dssp HTTCTTTTHHHHHHHCGGGGTSCHH----------------------------------HHHHHHHHHHHTSCCCHHHHH
T ss_pred HcCCCHHHHHHHHHhCchhhccChH----------------------------------HHHHHHHHHHHHcCCCHHHHH
Confidence 7788888888888888888877643 4567777776 8999999999
Q ss_pred HHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhcccccccCCCCceehhHHHHHHHHHcCCc----------cCCc
Q 015151 289 LAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLI----------KENF 358 (412)
Q Consensus 289 ~~i~~~P~iL~~S~~~L~~k~~fL~~~mg~~~~~I~~~P~lL~~Sle~ri~pR~~~l~~L~~kGl~----------~~~~ 358 (412)
.||.++|+||++|.++|++|++||+++||++..+|++ |.+|+||++ ||+|||.+|+. .|.. .+++
T Consensus 168 ~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~---lG~~q~~~~k~~~~~~np 242 (335)
T 4fp9_B 168 KILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLER---LGRYQTPDKKGQTQIPNP 242 (335)
T ss_dssp HHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHH---HTSCCCCCSSSCCSSCCC
T ss_pred HHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHH---cCCccCCCcccccCCCCc
Confidence 9999999999999999999999999999999999998 999999999 99999987664 4543 2467
Q ss_pred CccchhccchhHHHHHhcccCCCChhHHHHHHHhccc
Q 015151 359 SLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIE 395 (412)
Q Consensus 359 ~l~~~l~~sd~~F~~~~v~~~~e~~p~l~~~y~~~~~ 395 (412)
+|.+++..||++|+.++++...|+.....+.+..+..
T Consensus 243 sL~~il~~sd~~F~~~vA~~s~eey~~F~k~~~~e~~ 279 (335)
T 4fp9_B 243 LLKDILRVSEAEFLARTACTSVEEFQVFKKLLAREEE 279 (335)
T ss_dssp CHHHHTTSCHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHcCCHHHHHHHHHhcCHHHHHHHHHHHHhhhh
Confidence 8999999999999999999999998888888876554
No 4
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=2.9e-35 Score=291.52 Aligned_cols=276 Identities=16% Similarity=0.225 Sum_probs=234.6
Q ss_pred CCCChhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhCCCCchhHHHHhhhCCcccccccccchhhH
Q 015151 91 TPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPS 170 (412)
Q Consensus 91 ~~~~~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~lGls~~~I~~il~~~P~lL~~sle~~L~p~ 170 (412)
+|...++++++|.++|++.++ +++++|.++..+++ +..+.++||+++|++.++|++++.++|.+|.++.+ +|.|+
T Consensus 15 ~~~~~~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~ 89 (343)
T 3mva_O 15 EPLKNEDLLKNLLTMGVDIDM---ARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKR 89 (343)
T ss_dssp -----CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHH
T ss_pred CccccHHHHHHHHHcCCCHHH---HHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHH
Confidence 346688999999999999665 57789999999987 68999999999999999999999999999999965 89999
Q ss_pred HHHHHHhcCChHHHHHHHHHccc-c-cccc-ccccchHHHHHHcCCChhhhhhhcccCCcceeecccchHHHHHHHHHcC
Q 015151 171 YKFLKSLLSDDAKIVGALKRAAY-L-HDVE-KYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMG 247 (412)
Q Consensus 171 v~fL~~lg~s~~~i~~~l~~~P~-l-~s~e-~~l~~~v~~L~~lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG 247 (412)
++||+++|++++++.+++.++|+ + .+.+ +++.|+++||+++|++.++|.+++.++|++++.+.+++++++++++++|
T Consensus 90 l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lg 169 (343)
T 3mva_O 90 WDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAG 169 (343)
T ss_dssp HHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhC
Confidence 99999999999999999999999 5 5555 4899999999999999999999999999999999999999999999887
Q ss_pred CCCCc---hhHH----HHHHHHHhCChHHHHHHHHHHH-hcCCCHHHHHHHHHhCC-cccccCHHHHHHHHHHHHH---h
Q 015151 248 FSPSS---GVFV----HALVAVSTTTDQTWKQKVAVYS-SWGWSQNEFWLAFKKYP-RCMTLSVENINAKMDFYIN---Q 315 (412)
Q Consensus 248 ~~~~~---~~~~----~a~~~l~~~s~~~l~~kv~~l~-~lG~s~eev~~~i~~~P-~iL~~S~~~L~~k~~fL~~---~ 315 (412)
++.+. ..++ ...+.+++.++++++++++||+ ++|++.+++..++.+.| .++.++.+.++++++|+.+ .
T Consensus 170 v~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~ 249 (343)
T 3mva_O 170 LSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFS 249 (343)
T ss_dssp HHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHT
T ss_pred CCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHH
Confidence 75221 1122 2223456677999999999999 59999999999999865 7999999999999999987 6
Q ss_pred hCCChHHH----hhcccccccCCCCceehhHHHHHHHHHcCCccCC-cCccchhccchhHHHHHh
Q 015151 316 MGWQPSAV----ARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKEN-FSLSSVVISSDEYFTDAF 375 (412)
Q Consensus 316 mg~~~~~I----~~~P~lL~~Sle~ri~pR~~~l~~L~~kGl~~~~-~~l~~~l~~sd~~F~~~~ 375 (412)
+||+.++| .++|.+|.+|.| +|++++.++ ...|+...+ ...+.+|.+|-++-..|+
T Consensus 250 lG~s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl---~~mg~~~~~i~~~P~~l~~sleri~~R~ 310 (343)
T 3mva_O 250 LGCTEEEVQKFVLSYPDVIFLAEK-KFNDKIDCL---MEENISISQIIENPRVLDSSISTLKSRI 310 (343)
T ss_dssp TTCCHHHHHHHHHTCGGGGGSCHH-HHHHHHHHH---HTTTCCHHHHHHSGGGGGSCHHHHHHHH
T ss_pred cCCCHHHHHHHHHhCCchhcccHH-HHHHHHHHH---HHcCCCHHHHHhCCHHHhcCHHHHHHHH
Confidence 89998876 689999999999 499998754 457885433 346788888877777776
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=9.4e-33 Score=264.72 Aligned_cols=210 Identities=15% Similarity=0.245 Sum_probs=190.0
Q ss_pred CchHHHhHHhcCCCHHHHHhhh---ccc-ccCCCCChhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHH
Q 015151 63 SFTITYLIKSCGLPPDVAASLS---KKV-NFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFF 138 (412)
Q Consensus 63 ~~~v~yL~~s~Gls~~~a~~~~---~~l-~l~~~~~~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL 138 (412)
+.+|+||. ++|++++++.+.- +.+ .....+++.++++||+++|+++++|++++.++|.+|.+++++ +.|+++||
T Consensus 6 s~~l~~L~-~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L 83 (270)
T 3m66_A 6 SETLQKLV-LLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL 83 (270)
T ss_dssp HHHHHHHH-HTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred hHHHHHHH-HcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence 47899995 9999999997762 223 444346899999999999999999999999999999999997 99999999
Q ss_pred HhCCCCchhHHHHhhhCCcccccccccchhhHHHHH-HHhcCChHHHHHHHHHcccc--ccccccccchHHHH-HHcCCC
Q 015151 139 ASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFL-KSLLSDDAKIVGALKRAAYL--HDVEKYISPNISAL-RDIGVT 214 (412)
Q Consensus 139 ~~lGls~~~I~~il~~~P~lL~~sle~~L~p~v~fL-~~lg~s~~~i~~~l~~~P~l--~s~e~~l~~~v~~L-~~lGv~ 214 (412)
+++|++.++|++++.++|++|+++++ +++|+++|| .++|++++++.+++.++|.+ .+.+ +++++++++ +++|++
T Consensus 84 ~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s 161 (270)
T 3m66_A 84 HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFK 161 (270)
T ss_dssp HHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCC
T ss_pred HHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999 599999999 57999999999999999999 6665 599999976 579999
Q ss_pred hhhhhhhcccCCcceeecccchHHHHHHHHHcCCCCCchhHHHHHHHHHhCChHHHHHHHHHHH-hcCCCHHHHHHHHHh
Q 015151 215 KSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYS-SWGWSQNEFWLAFKK 293 (412)
Q Consensus 215 ~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~~~~~a~~~l~~~s~~~l~~kv~~l~-~lG~s~eev~~~i~~ 293 (412)
.++|..++.++|.+++.+. +++++|++||. ++|++.++|. +
T Consensus 162 ~~ei~~~v~~~P~il~~s~----------------------------------~~l~~k~~fL~~~mg~~~~~i~----~ 203 (270)
T 3m66_A 162 HNEIQHMITRIPKMLTANK----------------------------------MKLTETFDFVHNVMSIPHHIIV----K 203 (270)
T ss_dssp HHHHHHHHHHCGGGGTSCH----------------------------------HHHHHHHHHHHTTSCCCHHHHH----H
T ss_pred HHHHHHHHHhCChhheecH----------------------------------HHHHHHHHHHHHHhCCCHHHHH----h
Confidence 9999999999999998874 46788999996 7999999876 9
Q ss_pred CCcccccCHHHHHHHHHHHHH
Q 015151 294 YPRCMTLSVENINAKMDFYIN 314 (412)
Q Consensus 294 ~P~iL~~S~~~L~~k~~fL~~ 314 (412)
+|++|++|.++|++|+.|+..
T Consensus 204 ~P~~l~~Sleri~pR~~~l~~ 224 (270)
T 3m66_A 204 FPQVFNTRLFKVKERHLFLTY 224 (270)
T ss_dssp CGGGGGSCHHHHHHHHHHHHH
T ss_pred CchHhhCCHHHHHHHHHHHHH
Confidence 999999998899999999976
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.93 E-value=2.4e-25 Score=218.14 Aligned_cols=179 Identities=20% Similarity=0.271 Sum_probs=165.1
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhCCCCchhHHHHhhhCCcccccccccchhhHHHH
Q 015151 94 KPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKF 173 (412)
Q Consensus 94 ~~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~lGls~~~I~~il~~~P~lL~~sle~~L~p~v~f 173 (412)
+++.++..|.++||++++|++++.++|.++. .++.+++.||.++|++.++|+++|.++|++|..+++ +|+|+++|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 5788999999999999999999999999974 358899999999999999999999999999999997 79999999
Q ss_pred HHHhcCChHHHHHHHHHcccc--ccccccccchHHHHH-HcCCChhhhhhhcccCCcceeecccchHHHHHHHHHcCCCC
Q 015151 174 LKSLLSDDAKIVGALKRAAYL--HDVEKYISPNISALR-DIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSP 250 (412)
Q Consensus 174 L~~lg~s~~~i~~~l~~~P~l--~s~e~~l~~~v~~L~-~lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~ 250 (412)
|+++|++.+++.+++.++|.+ ++.+ .+..++.+|+ ++|++.++|..|+.++|.+|+++.
T Consensus 120 L~~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~----------------- 181 (335)
T 4fp9_B 120 LQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL----------------- 181 (335)
T ss_dssp HHHTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-----------------
T ss_pred HHHcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH-----------------
Confidence 999999999999999999999 7776 5999999997 699999999999999999999874
Q ss_pred CchhHHHHHHHHHhCChHHHHHHHHHHH-hcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCC
Q 015151 251 SSGVFVHALVAVSTTTDQTWKQKVAVYS-SWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGW 318 (412)
Q Consensus 251 ~~~~~~~a~~~l~~~s~~~l~~kv~~l~-~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~mg~ 318 (412)
+++++|++||. +||++.++|. + |++|++|.++|++|..||.. +|.
T Consensus 182 -----------------e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 182 -----------------GQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR 227 (335)
T ss_dssp -----------------HHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred -----------------HHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence 46888999998 8999999986 3 99999999999999999987 786
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.25 E-value=6.2e-11 Score=100.13 Aligned_cols=189 Identities=14% Similarity=0.169 Sum_probs=144.2
Q ss_pred chhhHHHHHHHhcCChHHHHHHHHHcccc-ccccccccchHHHHHHcCCChhhhhhhcccCCcceeecccchHHHHHHHH
Q 015151 166 QIIPSYKFLKSLLSDDAKIVGALKRAAYL-HDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVI 244 (412)
Q Consensus 166 ~L~p~v~fL~~lg~s~~~i~~~l~~~P~l-~s~e~~l~~~v~~L~~lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~ 244 (412)
++...+.-+.-+|++++-++-++++.|.+ .-.--.+..+-.+|+.+|+.+..+.+++.-+|.++++...
T Consensus 32 qlldiisefillglnpepvcvvlkkspqllklpimqmrkrssylqklglgegklkrvlyccpeiftmrqq---------- 101 (239)
T 4fzv_B 32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ---------- 101 (239)
T ss_dssp TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH----------
T ss_pred HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHHHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh----------
Confidence 44445555566777777777777777777 2221246777778888888888888888788888777543
Q ss_pred HcCCCCCchhHHHHHHHHHhCChHHHHHHHHHHH-hcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHH
Q 015151 245 HMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYS-SWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAV 323 (412)
Q Consensus 245 ~lG~~~~~~~~~~a~~~l~~~s~~~l~~kv~~l~-~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~mg~~~~~I 323 (412)
.+...+..++ ++=|+..+|.+++..||.++.-....+.-|+.|-.-.||+...+|
T Consensus 102 ------------------------dindtvrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdi 157 (239)
T 4fzv_B 102 ------------------------DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDI 157 (239)
T ss_dssp ------------------------HHHHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHH
T ss_pred ------------------------hHhHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcch
Confidence 3556666777 788999999999999999999999999999999988999999999
Q ss_pred hhcccccccCCCCceehhHHHHHHHHHc------CCc-cCCcCccchhccchhHHHHHhcccCCCChhHHHHHH
Q 015151 324 ARVATVLAYSLKRRIIPRCSVIRVLQLK------DLI-KENFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIF 390 (412)
Q Consensus 324 ~~~P~lL~~Sle~ri~pR~~~l~~L~~k------Gl~-~~~~~l~~~l~~sd~~F~~~~v~~~~e~~p~l~~~y 390 (412)
++ ..+|.||+. .|+.||-+++.|-+- |-. .+++-+.+++..|+.+|+.+-.....|+..-+-++.
T Consensus 158 vk-seylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartactsveefqvfkkll 229 (239)
T 4fzv_B 158 VK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKLL 229 (239)
T ss_dssp HH-TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCHHHHHHHHHHH
T ss_pred hH-HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccHHHHHHHHHHH
Confidence 98 589999998 799999987755321 221 135668999999999999999888766654444433
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=97.96 E-value=5.6e-05 Score=63.88 Aligned_cols=148 Identities=18% Similarity=0.249 Sum_probs=95.9
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhCCCCchhHHHHhhhCCcccccccccchhhHHHHH
Q 015151 95 PDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFL 174 (412)
Q Consensus 95 ~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~lGls~~~I~~il~~~P~lL~~sle~~L~p~v~fL 174 (412)
+-..+.-|--+|++++-+.-++++.|++|....- .+..+-.||+.+|+....+.+++.++|.|+++.
T Consensus 33 lldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmr------------ 99 (239)
T 4fzv_B 33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR------------ 99 (239)
T ss_dssp TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSC------------
T ss_pred HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHH------------
Confidence 3344444445666666666666666666655544 455556666666666666666666666665553
Q ss_pred HHhcCChHHHHHHHHHccccccccccccchHHHHHH-cCCChhhhhhhcccCCcceeecccchHHHHHHHHHcCCCCCch
Q 015151 175 KSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRD-IGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSG 253 (412)
Q Consensus 175 ~~lg~s~~~i~~~l~~~P~l~s~e~~l~~~v~~L~~-lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~ 253 (412)
+..+...+..|++ +-++..++.+++..+|.++......+
T Consensus 100 -----------------------qqdindtvrllkekclftvqqvtkilhscpsvlredlgql----------------- 139 (239)
T 4fzv_B 100 -----------------------QQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQL----------------- 139 (239)
T ss_dssp -----------------------HHHHHHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHH-----------------
T ss_pred -----------------------HhhHhHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhh-----------------
Confidence 2346777778875 78888899999999998887664433
Q ss_pred hHHHHHHHHHhCChHHHHHHHHHHH-hcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCC
Q 015151 254 VFVHALVAVSTTTDQTWKQKVAVYS-SWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGW 318 (412)
Q Consensus 254 ~~~~a~~~l~~~s~~~l~~kv~~l~-~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~mg~ 318 (412)
+-|+.+-- ++|+..-||. -...+.+|..+|+.+--||.. +|.
T Consensus 140 -----------------eykfqyayfrmgikhpdiv-----kseylqysltkikqrhiyler-lgr 182 (239)
T 4fzv_B 140 -----------------EYKFQYAYFRMGIKHPDIV-----KSEYLQYSLTKIKQRHIYLER-LGR 182 (239)
T ss_dssp -----------------HHHHHHHHHTSCCCHHHHH-----HTTGGGSCHHHHHHHHHHHHH-HTC
T ss_pred -----------------hhhHhHHHHHccCCCcchh-----HHHHHHHHHHHHHHHHhHHHH-hcc
Confidence 33444333 6777766654 135678898899999888876 664
No 9
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=90.47 E-value=1.2 Score=36.19 Aligned_cols=83 Identities=16% Similarity=0.236 Sum_probs=46.2
Q ss_pred chHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHH------hCCCCHHHHHHHHHhCCcccccCccc--cHHHHH
Q 015151 64 FTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILR------EHGFSDKHISKLVKKCPDLLVRRADK--TLLPKL 135 (412)
Q Consensus 64 ~~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~------~~G~s~~~i~~iv~~~P~lL~~~~~~--~L~p~l 135 (412)
..|..|+ ++||+...+.++.+.. . ++++..++||. +.|++..++...+..+.. +..+ .-...+
T Consensus 10 ~~v~~l~-~MGFp~~~~~kAl~~~---g-~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~----~~~~~~~~~~~v 80 (118)
T 4ae4_A 10 QCVETVV-NMGYSYECVLRAMKAA---G-ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQC----SEEKMMEFLQLM 80 (118)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHHH---C-SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSS----CHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHH---C-cCHHHHHHHHHHhchhcccCCChhhhHHHHHhccC----CccccccCHHHH
Confidence 5677775 8999999888874333 2 26788888875 346666666655543211 1000 001234
Q ss_pred HHHHhCCCCchhHHHHhhhC
Q 015151 136 EFFASVGISGTALADVLSSN 155 (412)
Q Consensus 136 ~fL~~lGls~~~I~~il~~~ 155 (412)
.-|.++|++...+.+.+..+
T Consensus 81 ~~L~eMGF~~~~a~~AL~~~ 100 (118)
T 4ae4_A 81 SKFKEMGFELKDIKEVLLLH 100 (118)
T ss_dssp HHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHc
Confidence 45555555555555554433
No 10
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=89.62 E-value=0.52 Score=46.16 Aligned_cols=25 Identities=8% Similarity=0.301 Sum_probs=14.2
Q ss_pred CChhHHHHHHHhCCCCHHHHHHHHH
Q 015151 93 EKPDLVLSILREHGFSDKHISKLVK 117 (412)
Q Consensus 93 ~~~~~vl~~L~~~G~s~~~i~~iv~ 117 (412)
+..+..++-|.++||+..++.+.++
T Consensus 166 ~~~~~~i~~l~~MGf~~~~~~~AL~ 190 (368)
T 1oqy_A 166 SEYETMLTEIMSMGYERERVVAALR 190 (368)
T ss_dssp TTHHHHHHHHHTTTCCSHHHHHHHH
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHH
Confidence 3445555666666666666555554
No 11
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=87.27 E-value=1.2 Score=30.90 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=22.7
Q ss_pred HhCCcccccCccccHHHHHHHHHhCCCCchhHHHHhhh
Q 015151 117 KKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSS 154 (412)
Q Consensus 117 ~~~P~lL~~~~~~~L~p~l~fL~~lGls~~~I~~il~~ 154 (412)
..+|.+-... +..+++||++.|++.++|...+.+
T Consensus 20 L~dp~V~~sp----~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 20 LQNSRVRQSP----LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHCTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hCChhhhcCC----HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3566664433 556778888888888887776654
No 12
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=85.76 E-value=0.59 Score=45.81 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=24.7
Q ss_pred hHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHH
Q 015151 65 TITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILR 103 (412)
Q Consensus 65 ~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~ 103 (412)
+|.-|+ ++||+++++.++.+ .+..|++.-++||-
T Consensus 171 ~i~~l~-~MGf~~~~~~~AL~----a~~nn~~~A~e~L~ 204 (368)
T 1oqy_A 171 MLTEIM-SMGYERERVVAALR----ASYNNPHRAVEYLL 204 (368)
T ss_dssp HHHHHH-TTTCCSHHHHHHHH----HSCSSTTHHHHTTT
T ss_pred HHHHHH-HcCCCHHHHHHHHH----HcCCCHHHHHHHHH
Confidence 678885 89999999988733 22346777777774
No 13
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=83.46 E-value=9.4 Score=30.89 Aligned_cols=98 Identities=10% Similarity=0.115 Sum_probs=66.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHH------hCCCCchhHHHHhhhCCcccccccccchhhH
Q 015151 97 LVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFA------SVGISGTALADVLSSNPAILGRSLKKQIIPS 170 (412)
Q Consensus 97 ~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~------~lGls~~~I~~il~~~P~lL~~sle~~L~p~ 170 (412)
..++-|.++||+...+.+.+.+.- ++....++||. +.|++..++...+..+..--.... .-...
T Consensus 10 ~~v~~l~~MGFp~~~~~kAl~~~g--------~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~--~~~~~ 79 (118)
T 4ae4_A 10 QCVETVVNMGYSYECVLRAMKAAG--------ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMM--EFLQL 79 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHC--------SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHH--HHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHC--------cCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccc--cCHHH
Confidence 457888899999999988876531 24566677765 567888777777654321100000 11235
Q ss_pred HHHHHHhcCChHHHHHHHHHccccccccccccchHHHHHH
Q 015151 171 YKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRD 210 (412)
Q Consensus 171 v~fL~~lg~s~~~i~~~l~~~P~l~s~e~~l~~~v~~L~~ 210 (412)
+.-|.++|++.+.+.++|..+.. ++.+-++||..
T Consensus 80 v~~L~eMGF~~~~a~~AL~~~~n------d~erAlewL~~ 113 (118)
T 4ae4_A 80 MSKFKEMGFELKDIKEVLLLHNN------DQDNALEDLMA 113 (118)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTT------CHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHcCC------CHHHHHHHHHH
Confidence 77888899999999888887753 47777788764
No 14
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=80.53 E-value=0.86 Score=47.74 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=11.9
Q ss_pred hHHhcCCCHHHHHhhh
Q 015151 69 LIKSCGLPPDVAASLS 84 (412)
Q Consensus 69 L~~s~Gls~~~a~~~~ 84 (412)
|...+|||++++.+|+
T Consensus 351 L~~~~gls~~qvVaIA 366 (1047)
T 3ugm_A 351 LCQAHGLTPDQVVAIA 366 (1047)
T ss_dssp HHTTSCCCHHHHHHHH
T ss_pred hhhhccCCHHHhhhhh
Confidence 3446888888888874
No 15
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=79.19 E-value=0.34 Score=50.63 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=10.9
Q ss_pred hCCCCchhHHHHhhhC
Q 015151 140 SVGISGTALADVLSSN 155 (412)
Q Consensus 140 ~lGls~~~I~~il~~~ 155 (412)
..|++.++|..|-..+
T Consensus 489 ~~gls~~qvvaiA~n~ 504 (1047)
T 3ugm_A 489 AHGLTPDQVVAIASNI 504 (1047)
T ss_dssp HSCCCSHHHHHHHSST
T ss_pred hcCCCHHHHHHHHhcc
Confidence 3788888777776543
No 16
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=78.94 E-value=2.3 Score=29.56 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhC
Q 015151 269 TWKQKVAVYSSWGWSQNEFWLAFKKY 294 (412)
Q Consensus 269 ~l~~kv~~l~~lG~s~eev~~~i~~~ 294 (412)
.+..|++||++=|++.+||..++.+.
T Consensus 29 p~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 29 PLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 47899999999999999999998763
No 17
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=78.93 E-value=3.5 Score=30.13 Aligned_cols=34 Identities=9% Similarity=0.208 Sum_probs=19.8
Q ss_pred hCCcccccCccccHHHHHHHHHhCCCCchhHHHHhhhC
Q 015151 118 KCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSN 155 (412)
Q Consensus 118 ~~P~lL~~~~~~~L~p~l~fL~~lGls~~~I~~il~~~ 155 (412)
.+|.+-... +..+++||++.|++.+||...+.+.
T Consensus 26 qdp~V~~sp----~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 26 QNSRVRQSP----LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CSTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CChhhhhCC----HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 455553332 4556667777777766666666553
No 18
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=69.94 E-value=6.1 Score=26.61 Aligned_cols=39 Identities=10% Similarity=0.254 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHH
Q 015151 269 TWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYIN 314 (412)
Q Consensus 269 ~l~~kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~ 314 (412)
.-+.+++-|.+|||+++++..+++.+-. ++..-++||.+
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~-------n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYN-------NPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTS-------CSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHh
Confidence 4567888899999999999988885432 34555777765
No 19
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=68.83 E-value=4.7 Score=27.60 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=26.3
Q ss_pred CCCchHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHHhCCC
Q 015151 61 EHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGF 107 (412)
Q Consensus 61 ~~~~~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~~~G~ 107 (412)
+....|.-|+ ++|||++++.++-. .+..|++-.-++|.+..|
T Consensus 10 ~~~~~Ia~Lm-~mGFsr~~ai~AL~----~a~nnve~AaniLlef~~ 51 (52)
T 2ooa_A 10 NVDAKIAKLM-GEGYAFEEVKRALE----IAQNNVEVARSILREFAF 51 (52)
T ss_dssp -CHHHHHHHH-HTTCCHHHHHHHHH----HTTTCHHHHHHHHHHHCC
T ss_pred ChHHHHHHHH-HcCCCHHHHHHHHH----HhCCCHHHHHHHHHHhcC
Confidence 3346777776 78888888877622 233566666666666554
No 20
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=68.60 E-value=2.5 Score=29.20 Aligned_cols=14 Identities=7% Similarity=0.363 Sum_probs=7.2
Q ss_pred HHHHHHHHHcCCCC
Q 015151 237 DESVKRVIHMGFSP 250 (412)
Q Consensus 237 ~~~v~~l~~lG~~~ 250 (412)
...++.|.++||++
T Consensus 10 ~qmlq~L~eMGFd~ 23 (54)
T 2cos_A 10 RQMLQELVNAGCDQ 23 (54)
T ss_dssp HHHHHHHHHHHCCH
T ss_pred HHHHHHHHHcCCCH
Confidence 34455555555554
No 21
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=68.20 E-value=5.3 Score=29.18 Aligned_cols=26 Identities=19% Similarity=0.269 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhC
Q 015151 269 TWKQKVAVYSSWGWSQNEFWLAFKKY 294 (412)
Q Consensus 269 ~l~~kv~~l~~lG~s~eev~~~i~~~ 294 (412)
-+.+|++||++=|++.+||..++.+.
T Consensus 34 p~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 34 PLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 37899999999999999999999874
No 22
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=67.73 E-value=4.1 Score=26.50 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhC
Q 015151 271 KQKVAVYSSWGWSQNEFWLAFKKY 294 (412)
Q Consensus 271 ~~kv~~l~~lG~s~eev~~~i~~~ 294 (412)
+.+++-|.++||+++++.+++..+
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~ 28 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 367888889999999988887753
No 23
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=67.10 E-value=25 Score=34.15 Aligned_cols=235 Identities=15% Similarity=0.151 Sum_probs=121.8
Q ss_pred HhcCCCHHHHHhhhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhCCCCchhHHH
Q 015151 71 KSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALAD 150 (412)
Q Consensus 71 ~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~lGls~~~I~~ 150 (412)
..+|.|.+++.++-++... .+..--+-|..+||+.+||..|-+ +|.-|..= ..+....+.-| -+++.++|..
T Consensus 9 ~~lgys~~q~~k~k~~~~s----~va~~h~~l~~~g~t~~~i~~is~-~~~al~~v-a~~y~~l~aal--~~lt~~~iV~ 80 (463)
T 4hpz_A 9 RTLGYSQQQQEKIKPKVRS----TVAQHHEALVGHGFTHAHIVALSQ-HPAALGTV-AVKYQDMIAAL--PEATHEAIVG 80 (463)
T ss_dssp GGGTCCHHHHHHHCGGGHH----HHHHHHHHHHHTTCCHHHHHHHTT-STHHHHHH-HTTHHHHHHHS--TTCCHHHHHH
T ss_pred HHhccCHHHHHHhhHHHHH----HHHHHHHHHHhcCCCHHHHHHhhc-cHhHHHHH-HHhhHHHHhhc--cccCHHHHHH
Confidence 5899999999998554321 223334567789999999987754 45543221 11222222222 5778888888
Q ss_pred HhhhCCcccccccccchhhHHHHHHH--hcCChHHHHHHHHHccccccccccccchHHHHHH--cCCChhhhhhhcccCC
Q 015151 151 VLSSNPAILGRSLKKQIIPSYKFLKS--LLSDDAKIVGALKRAAYLHDVEKYISPNISALRD--IGVTKSCISSLVISNP 226 (412)
Q Consensus 151 il~~~P~lL~~sle~~L~p~v~fL~~--lg~s~~~i~~~l~~~P~l~s~e~~l~~~v~~L~~--lGv~~~~i~~ll~~~P 226 (412)
+-..+-....-. .+.+...-|.. ++++.+++.++-.. ..-.-++ .+.+....|.. +|++++++..+-...-
T Consensus 81 ia~~~~g~~Al~---a~~~~~~~L~~~p~~l~~~qiv~IA~~-Gg~~Ale-av~~~~~~L~~apl~Lsp~qvVaIAsn~G 155 (463)
T 4hpz_A 81 VGKQWSGACALE---ALLTVAGELRGPPLQLDTGQLLKIAKR-GGVTAVE-VHHTWRNALTGAPLNLTPDQVVAIASNIG 155 (463)
T ss_dssp HHTSTTTTHHHH---HHHHHHHHHHSTTTCCCHHHHHHHHHH-HHHHHHH-HHHHTHHHHHSTTTCCCHHHHHHHHSSTT
T ss_pred HHhccchHHHHH---HHHHHHHHhhcCccCCCHHHHHHHHhh-CcHHHHH-HHHHHHHHHhCCCcCCCHHHHHHHHhcCc
Confidence 877765443321 45555555555 57888888877762 2111222 13344444554 7888888876543221
Q ss_pred cceeecccchHHHHHHHH-HcCCCCCchhHHHHHHHHHhCChHHHHHHHHHHHh-cCCCHHHHHHHHHhCCcccccC-HH
Q 015151 227 GVLCETSNKFDESVKRVI-HMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSS-WGWSQNEFWLAFKKYPRCMTLS-VE 303 (412)
Q Consensus 227 ~il~~s~~~~~~~v~~l~-~lG~~~~~~~~~~a~~~l~~~s~~~l~~kv~~l~~-lG~s~eev~~~i~~~P~iL~~S-~~ 303 (412)
.-- -.+.+......+. ..|+++....-+-+-. -...--+.+++....+.. .|||.++|..+-...- +-. .+
T Consensus 156 Gkq--ALeaV~~llpvL~~a~~Ls~~qVVaIAsn~-GGkQALeaV~~llpvl~~~~~Ls~aqVVaIAsn~G---GkQALe 229 (463)
T 4hpz_A 156 GKQ--ALETVQRLLPVLCQDHGLTPQQVVAIASNG-GGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDG---GKQALE 229 (463)
T ss_dssp HHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHTST-THHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSTT---HHHHHH
T ss_pred cHH--HHHHHHHHHHHHhhhcCCCHHHHHHHhhcC-chHHHHHHHHHHHHHhhccccCCHHHHHHHhhccc---cHHHHH
Confidence 100 0112222222233 2567665422110000 000001345567777764 8999999986543110 000 12
Q ss_pred HHHHHHHHHHHhhCCChHHHh
Q 015151 304 NINAKMDFYINQMGWQPSAVA 324 (412)
Q Consensus 304 ~L~~k~~fL~~~mg~~~~~I~ 324 (412)
.++.-..-|....|++..+|+
T Consensus 230 aV~~llpvl~~~~gls~aqVV 250 (463)
T 4hpz_A 230 TVQRLLPVLCQDHGLTPQQVV 250 (463)
T ss_dssp HHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHhhhhhhhhhccCCHHHHH
Confidence 333333334334566666654
No 24
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=64.71 E-value=6.8 Score=26.84 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHhcCC-CHHHHHHHHHhCCcccccCHHHHHHHHHHHHH
Q 015151 267 DQTWKQKVAVYSSWGW-SQNEFWLAFKKYPRCMTLSVENINAKMDFYIN 314 (412)
Q Consensus 267 ~~~l~~kv~~l~~lG~-s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~ 314 (412)
++..+.+++-|.+||| +++.+..+++.+= .++..-++||.+
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~-------gnve~Ave~L~~ 49 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIATG-------GDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHT-------SCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhC-------CCHHHHHHHHHH
Confidence 4567778888888888 7777666665322 235566777665
No 25
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.75 E-value=7.4 Score=25.80 Aligned_cols=36 Identities=8% Similarity=0.268 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHH
Q 015151 271 KQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYIN 314 (412)
Q Consensus 271 ~~kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~ 314 (412)
..+++-|.++||+++++.++++.+ + ++..-++||.+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~----~----n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT----S----TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS----C----SHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc----C----CHHHHHHHHHc
Confidence 456777888889888888888765 1 35566677654
No 26
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=62.97 E-value=8.4 Score=24.26 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhC
Q 015151 271 KQKVAVYSSWGWSQNEFWLAFKKY 294 (412)
Q Consensus 271 ~~kv~~l~~lG~s~eev~~~i~~~ 294 (412)
+.+++-|.++||+++++..++..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 456777888888888887776654
No 27
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.81 E-value=12 Score=26.50 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhh
Q 015151 271 KQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQM 316 (412)
Q Consensus 271 ~~kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~m 316 (412)
..+++-|.+|||+++++.++++.+-. ++..-++||.+.+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~A~e~L~~~~ 48 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATNN-------SLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCC
Confidence 45778888999999999988887632 3667788888754
No 28
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=61.35 E-value=6.5 Score=26.91 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHH
Q 015151 269 TWKQKVAVYSSWGWSQNEFWLAFK 292 (412)
Q Consensus 269 ~l~~kv~~l~~lG~s~eev~~~i~ 292 (412)
.....|+-|.++||+++++.+++.
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~ 33 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALE 33 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHH
Confidence 455788889999999999988776
No 29
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=59.70 E-value=13 Score=25.57 Aligned_cols=42 Identities=14% Similarity=0.285 Sum_probs=25.7
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhCCCC
Q 015151 96 DLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGIS 144 (412)
Q Consensus 96 ~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~lGls 144 (412)
...++-|.++||+.+-+...+++ .-.+.|++.++||..++++
T Consensus 10 ~qmlq~L~eMGFd~erae~Alk~-------Tg~~Gle~AmewL~k~~~~ 51 (54)
T 2cos_A 10 RQMLQELVNAGCDQEMAGRALKQ-------TGSRSIEAALEYISKMSGP 51 (54)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHH-------HTSCCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH-------hCcccHHHHHHHHHHhcCC
Confidence 34467777777777665555543 2234577777777776654
No 30
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=59.01 E-value=14 Score=27.93 Aligned_cols=40 Identities=10% Similarity=0.138 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhC
Q 015151 271 KQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMG 317 (412)
Q Consensus 271 ~~kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~mg 317 (412)
+.+|+-|.+|||+++++..+++..- .++..-++||....|
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~-------gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG-------GNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT-------TCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCC
Confidence 4677888889999999988887443 236777899988777
No 31
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=58.04 E-value=9.4 Score=27.20 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHh
Q 015151 271 KQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQ 315 (412)
Q Consensus 271 ~~kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~ 315 (412)
+.+|+-|.+|||+++++.++++.+= .++..-++||...
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~-------~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 4577888899999999988887652 2466778888774
No 32
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=57.42 E-value=12 Score=27.37 Aligned_cols=50 Identities=22% Similarity=0.497 Sum_probs=28.0
Q ss_pred HHhHHhcCCCHHHHHhhhccccc-CCCCC--hhHHHHHHHhCCCCHHHHHHHHH
Q 015151 67 TYLIKSCGLPPDVAASLSKKVNF-ETPEK--PDLVLSILREHGFSDKHISKLVK 117 (412)
Q Consensus 67 ~yL~~s~Gls~~~a~~~~~~l~l-~~~~~--~~~vl~~L~~~G~s~~~i~~iv~ 117 (412)
+|.+ +||++...+.+-+..+.- .-.++ ++-.-+.|+++|+...||.+|.+
T Consensus 7 ~FFl-~aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk 59 (72)
T 3idw_A 7 EFFL-NCGVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMK 59 (72)
T ss_dssp HHHH-HTTCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHH
T ss_pred HHHH-HcCCChHHHHHHHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHH
Confidence 5554 688888777765433210 11111 22234677778887777776664
No 33
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=56.23 E-value=8 Score=28.53 Aligned_cols=38 Identities=5% Similarity=0.271 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHH
Q 015151 270 WKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYIN 314 (412)
Q Consensus 270 l~~kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~ 314 (412)
.+.+|+-|.+|||+++++..+++.+= .++..-++||.+
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~-------~nve~Ave~Ll~ 66 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMS 66 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHH
Confidence 45677888889999999888887532 245666788775
No 34
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=54.02 E-value=21 Score=26.12 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=7.9
Q ss_pred HHHHHhcCChHHHHHHH
Q 015151 172 KFLKSLLSDDAKIVGAL 188 (412)
Q Consensus 172 ~fL~~lg~s~~~i~~~l 188 (412)
+.|+++|+...++.+++
T Consensus 42 ~~Lr~LGi~eGDIIrVm 58 (72)
T 3idw_A 42 SMLRTLGLREGDIVRVM 58 (72)
T ss_dssp HHHHHTTCCHHHHHHHH
T ss_pred HHHHHcCCchhhHHHHH
Confidence 34455555444444443
No 35
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=53.29 E-value=13 Score=24.62 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHH
Q 015151 269 TWKQKVAVYSSWGWSQNEFWLAFK 292 (412)
Q Consensus 269 ~l~~kv~~l~~lG~s~eev~~~i~ 292 (412)
.++..++-|.++||+.+++.+++.
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ 26 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALV 26 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHH
Confidence 366788889999999999987765
No 36
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=52.90 E-value=14 Score=25.30 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=17.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHH
Q 015151 271 KQKVAVYSSWGWSQNEFWLAFK 292 (412)
Q Consensus 271 ~~kv~~l~~lG~s~eev~~~i~ 292 (412)
+.+|+-|.++||+++++.+++.
T Consensus 10 e~~I~~L~~lGF~r~~ai~AL~ 31 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALV 31 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4568888899999999887776
No 37
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=52.46 E-value=11 Score=25.68 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhcCC-CHHHHHHHHH
Q 015151 268 QTWKQKVAVYSSWGW-SQNEFWLAFK 292 (412)
Q Consensus 268 ~~l~~kv~~l~~lG~-s~eev~~~i~ 292 (412)
+.++.+++-|.+||| +++.+.++++
T Consensus 10 ~~~~~~l~~L~~MGF~~~~~~~~AL~ 35 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREANLQALI 35 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 344566666667777 5555555544
No 38
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.24 E-value=14 Score=26.29 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHh
Q 015151 272 QKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQ 315 (412)
Q Consensus 272 ~kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~ 315 (412)
..++-|.+|||+++++.++++.+-. ..+..-++||.+.
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~------~nve~A~ewL~~~ 58 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGG------RSVQTACDWLFSH 58 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTT------SCHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC------CCHHHHHHHHHhC
Confidence 3566677788888888877775432 2466667777654
No 39
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.31 E-value=20 Score=26.27 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhC
Q 015151 271 KQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMG 317 (412)
Q Consensus 271 ~~kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~mg 317 (412)
+.+++-|.+|||+++.+.++++.+-. ..+..-++||.+.+.
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n------~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTGN------SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCCC
Confidence 35677788899999998888874421 136777899988654
No 40
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=49.64 E-value=31 Score=23.30 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=13.9
Q ss_pred cchHHHHHHHHHcCC-CC
Q 015151 234 NKFDESVKRVIHMGF-SP 250 (412)
Q Consensus 234 ~~~~~~v~~l~~lG~-~~ 250 (412)
+.....++.|.+||| ++
T Consensus 10 ~~~~~~l~~L~~MGF~~~ 27 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNR 27 (52)
T ss_dssp TTTHHHHHHHHHTTCCCH
T ss_pred hHHHHHHHHHHHcCCCCH
Confidence 456788999999999 54
No 41
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=49.08 E-value=15 Score=26.87 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHh
Q 015151 271 KQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQ 315 (412)
Q Consensus 271 ~~kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~ 315 (412)
..+++.|.++||+++++.++++.+=. ++..-++||.+.
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~Ave~L~~~ 67 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASGG-------DIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHhC
Confidence 45778888999999999888875432 466678888764
No 42
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=49.03 E-value=18 Score=24.94 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHH
Q 015151 269 TWKQKVAVYSSWGWSQNEFWLAFK 292 (412)
Q Consensus 269 ~l~~kv~~l~~lG~s~eev~~~i~ 292 (412)
-.+..|+-|.++||+.+++.+++.
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ 29 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALV 29 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHH
Confidence 456788899999999999988775
No 43
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=48.30 E-value=26 Score=24.17 Aligned_cols=17 Identities=18% Similarity=0.385 Sum_probs=10.6
Q ss_pred cchHHHHHHHHHcCCCC
Q 015151 234 NKFDESVKRVIHMGFSP 250 (412)
Q Consensus 234 ~~~~~~v~~l~~lG~~~ 250 (412)
+.....++.|.+|||..
T Consensus 7 e~~a~~L~~L~eMGF~D 23 (54)
T 2cp8_A 7 GQTAALMAHLFEMGFCD 23 (54)
T ss_dssp TTHHHHHHHHHHHTCCC
T ss_pred HhhHHHHHHHHHcCCCc
Confidence 44555667777777743
No 44
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=48.07 E-value=8.1 Score=27.44 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=27.5
Q ss_pred chHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHHhC
Q 015151 64 FTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREH 105 (412)
Q Consensus 64 ~~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~~~ 105 (412)
..|+-|+ ++||+.++|.++-+ .+..|++..+++|-++
T Consensus 21 e~V~~Lv-sMGFs~~qA~kALK----at~~NvErAaDWLFSH 57 (63)
T 1wgn_A 21 QCVETVV-NMGYSYECVLRAMK----KKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHH-HHHCCHHHHHHHHH----HHCSCHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHH----HcCCCHHHHHHHHHhC
Confidence 4688886 89999999988733 3456788888888654
No 45
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=46.22 E-value=27 Score=24.71 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhh
Q 015151 271 KQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQM 316 (412)
Q Consensus 271 ~~kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~m 316 (412)
+..|+-+..|||+.++..+++++.. .++..-.|||..++
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~-------~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKG-------ENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-------SCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCC
Confidence 4568888999999999999888654 35777788887654
No 46
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=45.38 E-value=69 Score=31.08 Aligned_cols=204 Identities=14% Similarity=0.135 Sum_probs=113.9
Q ss_pred HhHHhcCCCHHHHHhhhccc-ccCCC-CChhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHh--CCC
Q 015151 68 YLIKSCGLPPDVAASLSKKV-NFETP-EKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFAS--VGI 143 (412)
Q Consensus 68 yL~~s~Gls~~~a~~~~~~l-~l~~~-~~~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~--lGl 143 (412)
-|. ..||+++++..++++- .+... .+....+.-| .+++.++|-.|-+.+-...... .+.+...-|.. +|+
T Consensus 35 ~l~-~~g~t~~~i~~is~~~~al~~va~~y~~l~aal--~~lt~~~iV~ia~~~~g~~Al~---a~~~~~~~L~~~p~~l 108 (463)
T 4hpz_A 35 ALV-GHGFTHAHIVALSQHPAALGTVAVKYQDMIAAL--PEATHEAIVGVGKQWSGACALE---ALLTVAGELRGPPLQL 108 (463)
T ss_dssp HHH-HTTCCHHHHHHHTTSTHHHHHHHTTHHHHHHHS--TTCCHHHHHHHHTSTTTTHHHH---HHHHHHHHHHSTTTCC
T ss_pred HHH-hcCCCHHHHHHhhccHhHHHHHHHhhHHHHhhc--cccCHHHHHHHHhccchHHHHH---HHHHHHHHhhcCccCC
Confidence 354 6999999999998762 22211 2333333333 7889999988887766554433 35666666775 699
Q ss_pred CchhHHHHhhhCCcccccccccchhhHHHHHHH--hcCChHHHHHHHHHccccccccccccchHHHHHH-cCCChhhhhh
Q 015151 144 SGTALADVLSSNPAILGRSLKKQIIPSYKFLKS--LLSDDAKIVGALKRAAYLHDVEKYISPNISALRD-IGVTKSCISS 220 (412)
Q Consensus 144 s~~~I~~il~~~P~lL~~sle~~L~p~v~fL~~--lg~s~~~i~~~l~~~P~l~s~e~~l~~~v~~L~~-lGv~~~~i~~ 220 (412)
+.++|..|-..- .-- -+| .+..-..-|.. ++++++++.++-..+..---++ .+......|.. +|++.+++..
T Consensus 109 ~~~qiv~IA~~G-g~~--Ale-av~~~~~~L~~apl~Lsp~qvVaIAsn~GGkqALe-aV~~llpvL~~a~~Ls~~qVVa 183 (463)
T 4hpz_A 109 DTGQLLKIAKRG-GVT--AVE-VHHTWRNALTGAPLNLTPDQVVAIASNIGGKQALE-TVQRLLPVLCQDHGLTPQQVVA 183 (463)
T ss_dssp CHHHHHHHHHHH-HHH--HHH-HHHHTHHHHHSTTTCCCHHHHHHHHSSTTHHHHHH-HHHHHHHHHHHHHCCCHHHHHH
T ss_pred CHHHHHHHHhhC-cHH--HHH-HHHHHHHHHhCCCcCCCHHHHHHHHhcCccHHHHH-HHHHHHHHHhhhcCCCHHHHHH
Confidence 999998887622 000 011 22223333444 6788888887765544321122 24455556664 8999998877
Q ss_pred hcccCCcceeecccchHHHHHHHHH-cCCCCCchhH-------HHHHHHHHhCChHHHHHHHHHHH-hcCCCHHHHHHHH
Q 015151 221 LVISNPGVLCETSNKFDESVKRVIH-MGFSPSSGVF-------VHALVAVSTTTDQTWKQKVAVYS-SWGWSQNEFWLAF 291 (412)
Q Consensus 221 ll~~~P~il~~s~~~~~~~v~~l~~-lG~~~~~~~~-------~~a~~~l~~~s~~~l~~kv~~l~-~lG~s~eev~~~i 291 (412)
+-...-.-- -.+.+......+.. .|++++...- ..|+ +.+.+-.-.|. ..|||.++|..+-
T Consensus 184 IAsn~GGkQ--ALeaV~~llpvl~~~~~Ls~aqVVaIAsn~GGkQAL--------eaV~~llpvl~~~~gls~aqVVaIA 253 (463)
T 4hpz_A 184 IASNGGGKQ--ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL--------ETVQRLLPVLCQDHGLTPQQVVAIA 253 (463)
T ss_dssp HHTSTTHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTHHHHH--------HHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HhhcCchHH--HHHHHHHHHHHhhccccCCHHHHHHHhhccccHHHH--------HHHHhhhhhhhhhccCCHHHHHHHh
Confidence 632211000 01122222222322 4666654321 1122 23445555665 5899999998765
Q ss_pred H
Q 015151 292 K 292 (412)
Q Consensus 292 ~ 292 (412)
.
T Consensus 254 s 254 (463)
T 4hpz_A 254 S 254 (463)
T ss_dssp S
T ss_pred c
Confidence 4
No 47
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.95 E-value=38 Score=25.40 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhC
Q 015151 272 QKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMG 317 (412)
Q Consensus 272 ~kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~mg 317 (412)
..++-|.+|||+++.+.++++.+- ..+..-++||.+.++
T Consensus 31 ~~i~~L~~MGF~~~~a~~AL~~t~-------~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 31 AALRQLTEMGFPENRATKALQLNH-------MSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHCCC
Confidence 456777788999988888887541 246677888887653
No 48
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.00 E-value=41 Score=22.35 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=9.9
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 015151 170 SYKFLKSLLSDDAKIVGALKR 190 (412)
Q Consensus 170 ~v~fL~~lg~s~~~i~~~l~~ 190 (412)
.+.-|.++|++.+.+.++|..
T Consensus 11 ~i~~L~~MGF~~~~a~~AL~~ 31 (49)
T 1ify_A 11 MLTEIMSMGYERERVVAALRA 31 (49)
T ss_dssp HHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 344444455554444444443
No 49
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=42.99 E-value=27 Score=23.07 Aligned_cols=26 Identities=8% Similarity=0.257 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 015151 267 DQTWKQKVAVYSSWGWS-QNEFWLAFK 292 (412)
Q Consensus 267 ~~~l~~kv~~l~~lG~s-~eev~~~i~ 292 (412)
++.++.+++-|.+|||+ ++.+.++++
T Consensus 4 ~~~~~~~i~~L~~MGF~d~~~~~~AL~ 30 (46)
T 2bwb_A 4 EERYEHQLRQLNDMGFFDFDRNVAALR 30 (46)
T ss_dssp HHHTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 34566777778888875 344455544
No 50
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=42.93 E-value=9.2 Score=25.51 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhC
Q 015151 272 QKVAVYSSWGWSQNEFWLAFKKY 294 (412)
Q Consensus 272 ~kv~~l~~lG~s~eev~~~i~~~ 294 (412)
.+|+-|..+||++.++.+++..+
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a~ 28 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFAC 28 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc
Confidence 45566677888888877666543
No 51
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=41.85 E-value=25 Score=24.55 Aligned_cols=41 Identities=12% Similarity=0.301 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHhcCCC-HHHHHHHHHhCCcccccCHHHHHHHHHHHHH
Q 015151 267 DQTWKQKVAVYSSWGWS-QNEFWLAFKKYPRCMTLSVENINAKMDFYIN 314 (412)
Q Consensus 267 ~~~l~~kv~~l~~lG~s-~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~ 314 (412)
++.++.+++-|.+|||+ ++.+.++++. +-.++..-++||.+
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~~-------~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALRR-------SGGSVQGALDSLLN 55 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHH-------HTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHH-------hCCCHHHHHHHHHh
Confidence 45567788888888875 4454555542 11234555666654
No 52
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=41.70 E-value=23 Score=25.10 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=25.6
Q ss_pred HHcCCChhhhhhhcccCCcceeecccchHHHHHHHHHcCCCCC
Q 015151 209 RDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPS 251 (412)
Q Consensus 209 ~~lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~ 251 (412)
+.+|++...|.+++...+.-...+++..+...+.++++|+.|+
T Consensus 8 ~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn 50 (65)
T 1uxc_A 8 RLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPN 50 (65)
T ss_dssp HHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC
T ss_pred HHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCcc
Confidence 3478888888777765552122344444555555667777766
No 53
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=41.33 E-value=31 Score=24.48 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhh
Q 015151 273 KVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQM 316 (412)
Q Consensus 273 kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~m 316 (412)
.++-|.+|||+++.+.+++...-. ..++.-++||.+.+
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~n------~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATGR------KTAEEALAWLHDHC 49 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCC
Confidence 456677899999888888774321 24777889998865
No 54
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=40.42 E-value=31 Score=23.38 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=10.9
Q ss_pred hhhHHHHHHHhcC-ChHHHHHHHHH
Q 015151 167 IIPSYKFLKSLLS-DDAKIVGALKR 190 (412)
Q Consensus 167 L~p~v~fL~~lg~-s~~~i~~~l~~ 190 (412)
....++-|.++|+ +.+...++|..
T Consensus 11 ~~~~l~~L~~MGF~~~~~~~~AL~~ 35 (53)
T 2knz_A 11 FQQQLEQLNSMGFINREANLQALIA 35 (53)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3344455555555 33444444443
No 55
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.80 E-value=27 Score=23.93 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=23.6
Q ss_pred CCCCchHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHHhC
Q 015151 60 KEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREH 105 (412)
Q Consensus 60 ~~~~~~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~~~ 105 (412)
.+.+..+.-|+ ++||+++++.++- -....|++---++|++.
T Consensus 7 ~~~e~~I~~L~-~lGF~r~~ai~AL----~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 7 GQLSSEIERLM-SQGYSYQDIQKAL----VIAHNNIEMAKNILREF 47 (53)
T ss_dssp SCSHHHHHHHH-HHTCCHHHHHHHH----HHTTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHH-HcCCCHHHHHHHH----HHhcCCHHHHHHHHHHh
Confidence 34445567775 7888888777652 12334565555555543
No 56
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=37.91 E-value=35 Score=24.16 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhC
Q 015151 273 KVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMG 317 (412)
Q Consensus 273 kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~mg 317 (412)
.++-|.+|||+++++.++++.+- -..++.-++||.+.+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~------~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 12 ALESLIEMGFPRGRAEKALALTG------NQGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHT------SCCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhc------CCCHHHHHHHHHhCCC
Confidence 56677789999998888887331 1246777889887543
No 57
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=37.29 E-value=64 Score=23.55 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=22.2
Q ss_pred CchHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHHh
Q 015151 63 SFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILRE 104 (412)
Q Consensus 63 ~~~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~~ 104 (412)
...|.-|+ ++||+.+++..+.+. +..|++..+++|.+
T Consensus 30 ee~I~~L~-eMGF~r~~a~~AL~~----~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 30 EEQIQKLV-AMGFDRTQVEVALAA----ADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHH-TTTCCHHHHHHHHHH----HTSCHHHHHHHHHT
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 34566664 677777777665332 23466666776654
No 58
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.64 E-value=35 Score=24.22 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=28.0
Q ss_pred CCCchHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHHhCC
Q 015151 61 EHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHG 106 (412)
Q Consensus 61 ~~~~~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~~~G 106 (412)
+...+|.-|+ ++||+.+.+.++...- ...+++.-+++|-++.
T Consensus 8 ~~e~~v~~L~-~MGF~~~~a~~AL~~t---~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 8 SSPSLLEPLL-AMGFPVHTALKALAAT---GRKTAEEALAWLHDHC 49 (64)
T ss_dssp CSCSSHHHHH-HTSCCHHHHHHHHHHH---TSCCHHHHHHHHHHHS
T ss_pred CCHHHHHHHH-HcCCCHHHHHHHHHHh---CCCCHHHHHHHHHhCC
Confidence 3445778886 6899998887763321 2236888888886654
No 59
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.63 E-value=32 Score=24.22 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=25.8
Q ss_pred CCCCchHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHHh
Q 015151 60 KEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILRE 104 (412)
Q Consensus 60 ~~~~~~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~~ 104 (412)
......|.-|+ ++||+.+++.++.+.- ..+++..+++|.+
T Consensus 7 ~~~~~~v~~L~-~MGF~~~~a~~AL~~t----~~nve~A~e~L~~ 46 (63)
T 2dak_A 7 GPPEDCVTTIV-SMGFSRDQALKALRAT----NNSLERAVDWIFS 46 (63)
T ss_dssp CCCHHHHHHHH-HHTCCHHHHHHHHHHT----TSCSHHHHHHHHH
T ss_pred CCCHHHHHHHH-HcCCCHHHHHHHHHHc----CCCHHHHHHHHHh
Confidence 34445677775 6888888887764332 2367777777754
No 60
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=36.40 E-value=39 Score=26.54 Aligned_cols=42 Identities=19% Similarity=0.356 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHhc-CCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHH
Q 015151 266 TDQTWKQKVAVYSSW-GWSQNEFWLAFKKYPRCMTLSVENINAKMDFYIN 314 (412)
Q Consensus 266 s~~~l~~kv~~l~~l-G~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~ 314 (412)
+...++++|+.+.++ ||+++++..++..+=. .+..-+++|.+
T Consensus 35 ~d~d~eekVk~L~EmtG~seeeAr~AL~~~ng-------Dl~~AI~~Lle 77 (104)
T 1wj7_A 35 NDADFEEKVKQLIDITGKNQDECVIALHDCNG-------DVNRAINVLLE 77 (104)
T ss_dssp CCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTS-------CHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHhhCCCHHHHHHHHHHcCC-------CHHHHHHHHHh
Confidence 445678899999987 9999999887764422 35555666765
No 61
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=36.28 E-value=59 Score=24.35 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhh
Q 015151 271 KQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQM 316 (412)
Q Consensus 271 ~~kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~m 316 (412)
...++-|.+|||+++.+.++++..- -..+..-++||.+.+
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t~------n~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINTS------NAGVEEAMNWLLSHM 69 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT------TCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHc------CCCHHHHHHHHHhCC
Confidence 3456677788888888887766331 124667788888754
No 62
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=35.18 E-value=40 Score=23.98 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=29.4
Q ss_pred HHHH-HHcCCChhhhhhhcccCCcceeecccchHHHHHHHHHcCCCCCc
Q 015151 205 ISAL-RDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSS 252 (412)
Q Consensus 205 v~~L-~~lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~ 252 (412)
+.-+ +..|++...|.+++...|. .+.+.-+...+.++++|+.|+.
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~~~~---vs~~t~~rV~~~a~~lgY~pn~ 57 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMNPDK---VSQATRNRVEKAAREVGYLPQP 57 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCCCC---SCHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC---CCHHHHHHHHHHHHHhCCCccH
Confidence 3334 3589999999998876664 2445555556667788887763
No 63
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=34.65 E-value=40 Score=24.58 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=27.0
Q ss_pred CCCchHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHHhCC
Q 015151 61 EHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHG 106 (412)
Q Consensus 61 ~~~~~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~~~G 106 (412)
.....|.-|+ ++||+.++|.++.+. +..+++..+++|.+..
T Consensus 28 ~~~~~v~~L~-~MGF~~~~a~~AL~~----t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 28 IDQSSVDTLL-SFGFAEDVARKALKA----SGGDIEKATDWVFNNS 68 (73)
T ss_dssp SCHHHHHHHH-HHTCCHHHHHHHHHH----TTSCHHHHHHHHHHSC
T ss_pred CCHHHHHHHH-HcCCCHHHHHHHHHH----hCCCHHHHHHHHHhCC
Confidence 3445777885 788888888776332 2247777777776543
No 64
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.63 E-value=47 Score=23.48 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=27.6
Q ss_pred CCCCchHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHHhC
Q 015151 60 KEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREH 105 (412)
Q Consensus 60 ~~~~~~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~~~ 105 (412)
......|.-|+ ++||+.+++.++.+.- ...+++..++||-++
T Consensus 7 ~~~~~~v~~L~-~MGF~~~~a~~AL~~t---~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 7 GAELTALESLI-EMGFPRGRAEKALALT---GNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCCCCHHHHHH-TTTCCHHHHHHHHHHH---TSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HcCCCHHHHHHHHHHh---cCCCHHHHHHHHHhC
Confidence 33446778886 7888888887763311 135678888888654
No 65
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.26 E-value=28 Score=25.60 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHH
Q 015151 269 TWKQKVAVYSSWGWS-QNEFWLAFK 292 (412)
Q Consensus 269 ~l~~kv~~l~~lG~s-~eev~~~i~ 292 (412)
.++.+++-|.+|||+ ++.+.++++
T Consensus 28 ~ye~qi~qL~eMGF~dr~~~~~AL~ 52 (74)
T 1vej_A 28 RYQQELEELKALGFANRDANLQALV 52 (74)
T ss_dssp TSHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 345556666666663 344444443
No 66
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=33.12 E-value=26 Score=28.80 Aligned_cols=56 Identities=18% Similarity=0.345 Sum_probs=34.0
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHh-CCCCchhHHHHhhh
Q 015151 95 PDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFAS-VGISGTALADVLSS 154 (412)
Q Consensus 95 ~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~-lGls~~~I~~il~~ 154 (412)
+...+..++++|++..++.-++. +...+.+..-.|..+.|.+ +|++.++|.++|.+
T Consensus 18 p~~LL~~y~~LgLs~~E~~lLl~----L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~ 74 (135)
T 2v79_A 18 PNLLLTHYKQLGLNETELILLLK----IKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRM 74 (135)
T ss_dssp EHHHHHHHHHHTCCHHHHHHHHH----HHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHH----HHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44556777788888888665543 3222223334566667776 77777777776643
No 67
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=30.76 E-value=65 Score=25.63 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=9.5
Q ss_pred hCCCCchhHHHHhhhCC
Q 015151 140 SVGISGTALADVLSSNP 156 (412)
Q Consensus 140 ~lGls~~~I~~il~~~P 156 (412)
.+|++..+|..+-..+|
T Consensus 44 ~LGlse~dId~I~~~~p 60 (115)
T 2o71_A 44 SLGLSQTDIYRCKANHP 60 (115)
T ss_dssp HTTCCHHHHHHHHHHCT
T ss_pred HcCCCHHHHHHHHHHCC
Confidence 35555555555555555
No 68
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.98 E-value=41 Score=25.29 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=24.2
Q ss_pred CchHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHHh
Q 015151 63 SFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILRE 104 (412)
Q Consensus 63 ~~~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~~ 104 (412)
...|.-|+ ++||++++|.++.+. +..+++..+++|.+
T Consensus 30 ee~I~~Lv-~MGF~~~~A~~AL~~----t~gdve~A~e~L~s 66 (83)
T 1veg_A 30 QESINQLV-YMGFDTVVAEAALRV----FGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHH-HHSCCHHHHHHHHHH----TTTCHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHH----cCCCHHHHHHHHHh
Confidence 35677775 688888888776332 23457777777754
No 69
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.74 E-value=46 Score=25.08 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhh
Q 015151 271 KQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQM 316 (412)
Q Consensus 271 ~~kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~m 316 (412)
.++|+-|.++||+++.+.+++..+= ..+..-++||.+++
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n-------~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNN-------MNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHHCc
Confidence 6788999999999999888875322 34778889998743
No 70
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=29.54 E-value=1.1e+02 Score=21.56 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=28.6
Q ss_pred HHHHHHHHH-hcCCCHHHHHHHHHhCCccc--------ccCHHHHHHHHHHHHHhhCCChHHHhh
Q 015151 270 WKQKVAVYS-SWGWSQNEFWLAFKKYPRCM--------TLSVENINAKMDFYINQMGWQPSAVAR 325 (412)
Q Consensus 270 l~~kv~~l~-~lG~s~eev~~~i~~~P~iL--------~~S~~~L~~k~~fL~~~mg~~~~~I~~ 325 (412)
+..++..++ ..|++.++++..+--.+.-+ ..+.+.+..-.+.|-..+|++.+++..
T Consensus 11 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~~~~~l~~~~~v~~~~l~~ 75 (84)
T 2ef8_A 11 LVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMDILLK 75 (84)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHccccCCCHHHHHc
Confidence 334444444 45666666555443222211 123444555555565666888877653
No 71
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.52 E-value=75 Score=21.62 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=24.1
Q ss_pred chhhHHHHHHHhcCChHH-HHHHHHHccccccccccccchHHHHHHc
Q 015151 166 QIIPSYKFLKSLLSDDAK-IVGALKRAAYLHDVEKYISPNISALRDI 211 (412)
Q Consensus 166 ~L~p~v~fL~~lg~s~~~-i~~~l~~~P~l~s~e~~l~~~v~~L~~l 211 (412)
.....++-|.++|+++++ ..++|...-+ ++...+++|.+.
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~G------dv~~Ave~L~~~ 48 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATGG------DVDAAVEKLRQS 48 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHTS------CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHcCC------CHHHHHHHHHhC
Confidence 445667777777776644 4566654432 466666666654
No 72
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.39 E-value=1.2e+02 Score=21.33 Aligned_cols=37 Identities=8% Similarity=0.155 Sum_probs=19.5
Q ss_pred CchHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHHh
Q 015151 63 SFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILRE 104 (412)
Q Consensus 63 ~~~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~~ 104 (412)
..+|.-|+ ++||+.++|.++.+. +..+++..+++|.+
T Consensus 10 ~~~I~~L~-~MGF~~~~a~~AL~~----~~~nve~A~e~L~~ 46 (63)
T 1wji_A 10 EKALKHIT-EMGFSKEASRQALMD----NGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHH-TTTCCHHHHHHHHHH----TTSCHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 34556664 566666666554221 22356666666643
No 73
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=27.01 E-value=3.7e+02 Score=24.66 Aligned_cols=53 Identities=26% Similarity=0.353 Sum_probs=39.8
Q ss_pred chhhHHHHHHHh-cCChHHHHHHHHHccccccccccccchHHHHHHcCCChhhhhhh
Q 015151 166 QIIPSYKFLKSL-LSDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVTKSCISSL 221 (412)
Q Consensus 166 ~L~p~v~fL~~l-g~s~~~i~~~l~~~P~l~s~e~~l~~~v~~L~~lGv~~~~i~~l 221 (412)
.+.|-+.-|.++ |+..+...++++++... + +.-..-++-|++-|+++.+|..+
T Consensus 462 slvpgyaslisirgidreraerllkkyggy-s--kvreagveelredgltdaqirel 515 (519)
T 2csb_A 462 SLVPGYASLISIRGIDRERAERLLKKYGGY-S--KVREAGVEELREDGLTDAQIREL 515 (519)
T ss_dssp HHSTTHHHHHTSTTCCHHHHHHHHHHHTSH-H--HHHTSCHHHHHHTTCCHHHHHHH
T ss_pred HhccchhhheeeccccHHHHHHHHHHhCCh-h--HHHHhhHHHHHHcCCcHHHHHHh
Confidence 577888888884 77788888999998764 1 11245678899999999988764
No 74
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=26.09 E-value=83 Score=24.94 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=9.9
Q ss_pred hCCCCchhHHHHhhhCC
Q 015151 140 SVGISGTALADVLSSNP 156 (412)
Q Consensus 140 ~lGls~~~I~~il~~~P 156 (412)
.+|++..+|..+-..+|
T Consensus 44 ~LGlse~dId~I~~~~p 60 (114)
T 2of5_A 44 SLGLSQTDIYRCKANHP 60 (114)
T ss_dssp TTTCCHHHHHHHHHHCS
T ss_pred HcCCCHHHHHHHHHHCC
Confidence 45566666666555555
No 75
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=25.79 E-value=64 Score=22.64 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.0
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHh
Q 015151 95 PDLVLSILREHGFSDKHISKLVKK 118 (412)
Q Consensus 95 ~~~vl~~L~~~G~s~~~i~~iv~~ 118 (412)
.+.+++-|..+|+++.++.+++.+
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~ 40 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLD 40 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 356888888999999999888876
No 76
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=25.44 E-value=3.1e+02 Score=23.16 Aligned_cols=81 Identities=15% Similarity=0.074 Sum_probs=46.3
Q ss_pred HHHHHcCCChhhhhhhcccCCcceeecccchHHHHHHHHHcCCCCCc---hhHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 015151 206 SALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSS---GVFVHALVAVSTTTDQTWKQKVAVYSSWGW 282 (412)
Q Consensus 206 ~~L~~lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~---~~~~~a~~~l~~~s~~~l~~kv~~l~~lG~ 282 (412)
.+|..---+..++..-|... +.+++.+...++++.+.|+-.+. ..|+..-......++..|+.. |+.-|+
T Consensus 26 ~~Ls~r~~S~~EL~~KL~~k----g~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~e---L~~KGI 98 (177)
T 3e3v_A 26 NYLSYQLRTRKEVEDKLRSL----DIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLN---LSKKGI 98 (177)
T ss_dssp HHHHSSCCCHHHHHTTSGGG----TCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHH---HHTTTC
T ss_pred HHhccccccHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHH---HHHcCC
Confidence 33333444555555444332 34456677888999999986432 123332222223555555443 567899
Q ss_pred CHHHHHHHHHh
Q 015151 283 SQNEFWLAFKK 293 (412)
Q Consensus 283 s~eev~~~i~~ 293 (412)
+.+.|..++..
T Consensus 99 ~~~~I~~al~~ 109 (177)
T 3e3v_A 99 DDNIAEDALIL 109 (177)
T ss_dssp CHHHHHHHHTT
T ss_pred CHHHHHHHHHh
Confidence 99988887754
No 77
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.19 E-value=51 Score=23.74 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHhcCCCHHHH-HHHHHhCCcccccCHHHHHHHHHHHHH
Q 015151 267 DQTWKQKVAVYSSWGWSQNEF-WLAFKKYPRCMTLSVENINAKMDFYIN 314 (412)
Q Consensus 267 ~~~l~~kv~~l~~lG~s~eev-~~~i~~~P~iL~~S~~~L~~k~~fL~~ 314 (412)
++.++.+++-|.+|||+.++- .++++ .+-.++..-++||.+
T Consensus 16 e~~y~~ql~qL~~MGF~d~~an~~AL~-------at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 16 EVRFSKEMECLQAMGFVNYNANLQALI-------ATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHH-------HTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHH-------HcCCCHHHHHHHHHh
Confidence 445666777777777755442 44433 223346666777765
No 78
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=24.51 E-value=65 Score=24.24 Aligned_cols=24 Identities=8% Similarity=-0.006 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHh
Q 015151 270 WKQKVAVYSSWGWSQNEFWLAFKK 293 (412)
Q Consensus 270 l~~kv~~l~~lG~s~eev~~~i~~ 293 (412)
+-..+..++++|||-++|..++.-
T Consensus 5 rL~~I~~lr~lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 5 RLKFIRHARQLGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHH
Confidence 345678889999999999998863
No 79
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=24.30 E-value=63 Score=28.22 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhC
Q 015151 268 QTWKQKVAVYSSWGWSQNEFWLAFKKY 294 (412)
Q Consensus 268 ~~l~~kv~~l~~lG~s~eev~~~i~~~ 294 (412)
...+.||+-|.++||+++++..++.++
T Consensus 161 ~~~eekV~~l~~MGf~~~~a~~AL~~~ 187 (201)
T 3k9o_A 161 PEYTKKIENLCAMGFDRNAVIVALSSK 187 (201)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 345778888888888888888777765
No 80
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.24 E-value=63 Score=24.18 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=26.5
Q ss_pred CCCchHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHHhC
Q 015151 61 EHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREH 105 (412)
Q Consensus 61 ~~~~~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~~~ 105 (412)
....+|.-|+ ++||+.+.+.++.+. +..+++..++||-++
T Consensus 28 ~~e~~i~~L~-~MGF~~~~a~~AL~~----t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 28 VDEAALRQLT-EMGFPENRATKALQL----NHMSVPQAMEWLIEH 67 (83)
T ss_dssp CCHHHHHHHH-HHTCCHHHHHHHHHH----TTSCHHHHHHHHHHG
T ss_pred CCHHHHHHHH-HcCCCHHHHHHHHHH----hCCCHHHHHHHHHHC
Confidence 3345677775 688888888776332 235777778887654
No 81
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=24.00 E-value=1.3e+02 Score=25.24 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=22.4
Q ss_pred CCcccccCccccHHHHHHHHHhCCCCchhHHHHhhhC
Q 015151 119 CPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSN 155 (412)
Q Consensus 119 ~P~lL~~~~~~~L~p~l~fL~~lGls~~~I~~il~~~ 155 (412)
.|.-+..+++ ++...|--|...|+++++|+-++...
T Consensus 24 ~P~W~~~~~e-eVe~~I~klakkG~tpSqIG~iLRD~ 59 (153)
T 2xzm_O 24 SPKWLHMTPS-TVVDLSVKLAKKGLTPSQIGVILRDQ 59 (153)
T ss_dssp CCSSCCCCHH-HHHHHHHHHHHTTCCHHHHHHHHHHS
T ss_pred CCccccCCHH-HHHHHHHHHHHCCCCHHHhhhHHhhc
Confidence 4555666655 46666666666666666666666544
No 82
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=23.33 E-value=94 Score=21.76 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhC
Q 015151 269 TWKQKVAVYSSWGWSQNEFWLAFKKY 294 (412)
Q Consensus 269 ~l~~kv~~l~~lG~s~eev~~~i~~~ 294 (412)
...+-++-|..+||++.|+.+++.+.
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44677888899999999999888764
No 83
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=22.75 E-value=1.2e+02 Score=19.25 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHH
Q 015151 269 TWKQKVAVYSSWGWSQNEFWLA 290 (412)
Q Consensus 269 ~l~~kv~~l~~lG~s~eev~~~ 290 (412)
.++.-++.+++-|||.+++..+
T Consensus 4 alkselqalkkegfspeelaal 25 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAAL 25 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHH
Confidence 4566677888999999998743
No 84
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=22.12 E-value=1.1e+02 Score=21.25 Aligned_cols=24 Identities=13% Similarity=0.064 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHh
Q 015151 270 WKQKVAVYSSWGWSQNEFWLAFKK 293 (412)
Q Consensus 270 l~~kv~~l~~lG~s~eev~~~i~~ 293 (412)
|..-+.-.+++|+|.+||..++..
T Consensus 15 wl~LI~~Ak~lGlsleEIrefL~l 38 (57)
T 1b0n_B 15 WVELMVEAKEANISPEEIRKYLLL 38 (57)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444444556899999999987763
No 85
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=21.55 E-value=1.2e+02 Score=28.81 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=27.0
Q ss_pred HHHHhCCCCchhHHHHhhhCCcccccccccchhhHHHHHHHhcCChHHHHHHHHHcccc
Q 015151 136 EFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYL 194 (412)
Q Consensus 136 ~fL~~lGls~~~I~~il~~~P~lL~~sle~~L~p~v~fL~~lg~s~~~i~~~l~~~P~l 194 (412)
+.+..+|++++++..+.. +++++--.++ | |+..+...++|.+++.+
T Consensus 210 ~v~~~~gl~~~q~id~~~----L~G~D~~~gi-p--------GiG~KtA~kll~~~gsl 255 (341)
T 3q8k_A 210 RILQELGLNQEQFVDLCI----LLGSDYCESI-R--------GIGPKRAVDLIQKHKSI 255 (341)
T ss_dssp HHHHHHTCCHHHHHHHHH----HHCCSSSCCC-T--------TCCHHHHHHHHHHHCSH
T ss_pred HHHHHhCCCHHHHHHHHH----hcCCCCCCCC-C--------CccHHHHHHHHHHcCCH
Confidence 445567777777766542 3333332233 1 66677777777777654
No 86
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=21.50 E-value=1.2e+02 Score=25.25 Aligned_cols=36 Identities=11% Similarity=0.334 Sum_probs=21.3
Q ss_pred CCcccccCccccHHHHHHHHHhCCCCchhHHHHhhhC
Q 015151 119 CPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSN 155 (412)
Q Consensus 119 ~P~lL~~~~~~~L~p~l~fL~~lGls~~~I~~il~~~ 155 (412)
.|.-+..+++ ++...|--|...|+++++|+-++...
T Consensus 22 ~P~W~~~~~e-eVe~~I~klakkG~tpSqIG~iLRD~ 57 (151)
T 3u5c_N 22 APAWFKLSSE-SVIEQIVKYARKGLTPSQIGVLLRDA 57 (151)
T ss_dssp CCSSCCSCHH-HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCcCCCHH-HHHHHHHHHHHCCCCHHHhhhHHhcc
Confidence 4555555555 46666666666666666666555443
No 87
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=20.98 E-value=34 Score=25.46 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=35.1
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhCCCCchhHHHHhhhCCc
Q 015151 95 PDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPA 157 (412)
Q Consensus 95 ~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~lGls~~~I~~il~~~P~ 157 (412)
.+..-++|+++++..+| -|+++..||- .+.+|+.+.|+.+++...+.
T Consensus 17 ~eEk~~lL~~y~i~~~q-------LPrI~~~DPv---------ar~~G~k~GdVvkI~R~S~t 63 (78)
T 1hmj_A 17 KEEVEEILKRYNIKIQQ-------LPKIYEDDPV---------IQEIGAKEGDVVRVIRKSPT 63 (78)
T ss_pred HHHHHHHHHHcCCCHHH-------CCeeeCcCHh---------hHHhCCCCCCEEEEEECCCC
Confidence 56778899999998887 5667766663 24578888888888877663
No 88
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=20.83 E-value=3.7e+02 Score=22.43 Aligned_cols=73 Identities=19% Similarity=0.129 Sum_probs=47.9
Q ss_pred CCCCchhHHHHhhhCCcccccccccchhhHHHHHHHhcCChHHHHHHHHHccccccccc-cccchHHHHHHcCCCh
Q 015151 141 VGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEK-YISPNISALRDIGVTK 215 (412)
Q Consensus 141 lGls~~~I~~il~~~P~lL~~sle~~L~p~v~fL~~lg~s~~~i~~~l~~~P~l~s~e~-~l~~~v~~L~~lGv~~ 215 (412)
.|.|.+... .-...|..+..+.| .+...+--|..-|.++.+|+-+|.-.-.+-++.. +=+....+|++.|+.+
T Consensus 11 kG~S~S~~P-~~~~~P~W~~~~~e-eVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glap 84 (153)
T 2xzm_O 11 KGISGSALP-FKRRSPKWLHMTPS-TVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKNGCAP 84 (153)
T ss_dssp CCCCCCCCC-SCCSCCSSCCCCHH-HHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHTTCCC
T ss_pred CCccCCCCC-CCCCCCccccCCHH-HHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHcCCCC
Confidence 456655444 23346777777766 6888888888999999999988877655511111 1134557778877765
No 89
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=20.36 E-value=3.7e+02 Score=22.23 Aligned_cols=23 Identities=17% Similarity=-0.045 Sum_probs=15.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHcc
Q 015151 170 SYKFLKSLLSDDAKIVGALKRAA 192 (412)
Q Consensus 170 ~v~fL~~lg~s~~~i~~~l~~~P 192 (412)
.+.||..-|++.+.|..++...|
T Consensus 138 ~~~~L~rrGF~~~~I~~~l~~~~ 160 (162)
T 3dfg_A 138 AADLLARRGFDGNSIRLATRFDL 160 (162)
T ss_dssp HHHHHHHTTCCHHHHHHHTTC--
T ss_pred HHHHHHHCCCCHHHHHHHHhcCc
Confidence 45788888888888877765443
Done!