Query 015152
Match_columns 412
No_of_seqs 179 out of 719
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:36:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3781 Predicted membrane pro 100.0 9.7E-74 2.1E-78 541.2 31.0 280 101-388 7-294 (306)
2 PF01062 Bestrophin: Bestrophi 100.0 2.5E-64 5.3E-69 494.1 27.7 276 94-381 7-293 (293)
3 KOG3547 Bestrophin (Best vitel 99.8 3E-20 6.4E-25 191.4 18.6 259 98-365 12-300 (450)
4 PF14023 DUF4239: Protein of u 97.3 0.052 1.1E-06 51.1 20.3 67 158-228 2-68 (209)
5 cd08816 CARD_RIG-I_1 Caspase a 51.4 39 0.00085 28.0 5.2 82 219-303 6-88 (89)
6 COG2238 RPS19A Ribosomal prote 42.6 19 0.00041 32.5 2.2 38 58-97 12-54 (147)
7 PF01988 VIT1: VIT family; In 38.7 2E+02 0.0043 27.2 8.7 28 305-332 130-157 (213)
8 PF10947 DUF2628: Protein of u 36.0 1.3E+02 0.0029 25.1 6.4 67 101-179 38-104 (108)
9 cd02433 Nodulin-21_like_2 Nodu 27.9 4.2E+02 0.0091 25.7 9.1 49 305-353 149-199 (234)
10 KOG3339 Predicted glycosyltran 26.7 69 0.0015 30.5 3.3 84 41-134 34-125 (211)
11 COG0818 DgkA Diacylglycerol ki 24.9 2.2E+02 0.0048 25.1 6.0 63 313-375 30-97 (123)
12 PF13677 MotB_plug: Membrane M 23.7 1.1E+02 0.0024 23.1 3.4 26 309-334 19-44 (58)
13 PF09163 Form-deh_trans: Forma 20.8 1.6E+02 0.0034 21.5 3.5 29 113-141 6-34 (44)
No 1
>COG3781 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=9.7e-74 Score=541.16 Aligned_cols=280 Identities=25% Similarity=0.426 Sum_probs=261.1
Q ss_pred hhHHHHHHhcchhhHhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccccCCchhhhhhhHHHHHHHhcchhHHHHH
Q 015152 101 RHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRF 180 (412)
Q Consensus 101 R~~~~ll~~~~gsV~~~i~~~vl~~~~~a~~V~~l~~~~~~~~~p~~~p~l~~~~~p~sllg~aLsLLLvFRtNsaY~Rw 180 (412)
.||..+++.|+|||+++|.++++++++++++|..++... .|. .......||++.|++||++||||||+|||||
T Consensus 7 ~hw~r~~f~~rGSVl~~i~~rll~~~~fS~~v~~~~~w~----~~~---~i~~~~tpf~i~giaLai~L~FRnNaaYdR~ 79 (306)
T COG3781 7 QHWLRLIFVWRGSVLPKILPRLLLCFLFSLVVTAVLPWY----TPL---SIPFTLTPFSIPGIALAIFLGFRNNAAYDRY 79 (306)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhh----ccc---cceeccCcchhHHHHHHHHHhhccchHHHHH
Confidence 456679999999999999999999999999998887621 121 2345668999999999999999999999999
Q ss_pred HHHHHHhhHHHHhHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhcccCCCCCchhHhhhcCHhHHHHHhcCCCc
Q 015152 181 VDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHR 260 (412)
Q Consensus 181 wEaRk~WG~ivn~sR~lar~~~~~~~~~~d~~~~~~l~r~liAf~~aLk~hLR~~~~~~~eL~~lL~~~El~~l~~~~n~ 260 (412)
|||||+||+++|.+||++|++++.++.+.|++.++++++.++||++|+|.|||++ +..+|+..+|+.+.++.+.++.|+
T Consensus 80 wEaRKlWG~lvn~~Rnl~R~i~t~v~e~~d~a~~~~~l~llvAFahalr~~LR~q-p~~~~l~a~l~~~~~~kv~a~~np 158 (306)
T COG3781 80 WEARKLWGQLVNAIRNLARQIWTLVPETLDSADVREFLRLLVAFAHALRLQLRKQ-PQNEDLAALLPTSDYEKVLASNNP 158 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHhCC-CchHHHHHhcCHHHHHHHHhccCC
Confidence 9999999999999999999999999877788999999999999999999999976 568999999999999999999999
Q ss_pred HHHHHHHHHHHHH----cccCChhhHHHHHHHHHHHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHhhhHhhhcCCc
Q 015152 261 PRCIIEFISQSLQ----LLNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHW 336 (412)
Q Consensus 261 P~~il~~l~~~l~----~~~l~~~~~~~m~~~l~~l~d~~G~cERI~~TPiP~sYt~h~~~fl~lylllLPf~Lv~~~gW 336 (412)
|+.++.+|+++++ +|.+++.+...|++.++.+++.+||||||.+||+||+|+.|+||.+++||++|||+||.++||
T Consensus 159 p~ei~~wmGe~l~~q~r~g~l~~~~~~sl~~~L~~~s~vlggCERI~~TPiPfAYtl~lhrtvyl~C~~LPF~lV~tlgw 238 (306)
T COG3781 159 PLEIALWMGEWLQQQRRNGQLDAIQFTSLDRRLNSISAVLGGCERIAYTPIPFAYTLHLHRTVYLFCFLLPFGLVETLGW 238 (306)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHhHHHHhcCCccHHHHHHHHHHHHHHHHHhHHHHHHHccc
Confidence 9999999998885 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCCCCC----CCHHHHHHHHHHHHHHHHhcccc
Q 015152 337 IVVPATFISAASLFCIEEVGVLIEEPFPM----LALDELCNLVQSNIQEAIATQKV 388 (412)
Q Consensus 337 ~tip~t~lva~~llGie~Ig~eIEePFg~----LPLd~ic~~Ie~~l~e~l~~~~~ 388 (412)
+|+.++++|||.|+|+|+||+|||||||. ||||+||++||+|+.+++++.+.
T Consensus 239 ~Tp~~s~lIayTffgleaia~EiEdPFGte~NDLpLD~ic~~ie~~l~dl~~e~p~ 294 (306)
T COG3781 239 ATPFFSVLIAYTFFGLEAIAEEIEDPFGTEANDLPLDAICNTIEINLLDLIGEAPI 294 (306)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCccCCCCCcCcHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999995 99999999999999999998874
No 2
>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.
Probab=100.00 E-value=2.5e-64 Score=494.08 Aligned_cols=276 Identities=30% Similarity=0.512 Sum_probs=246.5
Q ss_pred hhhhccchhHHHHHHhcchhhHhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccccCCchhhhhhhHHHHHHHhcc
Q 015152 94 VEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRT 173 (412)
Q Consensus 94 ~~hrs~~R~~~~ll~~~~gsV~~~i~~~vl~~~~~a~~V~~l~~~~~~~~~p~~~p~l~~~~~p~sllg~aLsLLLvFRt 173 (412)
..||++ ++++++++.|+|||+++++++++++++++++|++++.... ...+..+..+++++|++|||+|||||
T Consensus 7 ~~~~~~-~~~~~~l~~~~gsv~~~i~~~ll~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~l~g~~l~~lL~Fr~ 78 (293)
T PF01062_consen 7 QDVRTS-RSWWRLLFRWRGSVLKRIWPPLLVFLALAAAVALLYIFEP-------ICWLSLPSSPFSLLGIALSFLLVFRT 78 (293)
T ss_pred cccCCc-ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cccccccccchhHHHHHHHHHHHHHH
Confidence 446666 7777899999999999999999999999999999874221 12345667789999999999999999
Q ss_pred hhHHHHHHHHHHHhhHHHHhHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhcccCCCCCchhHhhhc---CHhH
Q 015152 174 EASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLL---DADD 250 (412)
Q Consensus 174 NsaY~RwwEaRk~WG~ivn~sR~lar~~~~~~~~~~d~~~~~~l~r~liAf~~aLk~hLR~~~~~~~eL~~lL---~~~E 250 (412)
|+||+|||||||+||.++|.+||++++++++++++ ..+++++|+++||++++|+|||++++ ..++++++ .++|
T Consensus 79 n~ay~Rwwe~r~~wg~l~~~~r~l~~~~~~~~~~~---~~~~~l~r~~ia~~~~~~~~lR~~~~-~~~~~~ll~~g~~~~ 154 (293)
T PF01062_consen 79 NTAYDRWWEARKLWGNLVNWSRNLARQICAFVPDD---DERRRLLRRLIAFAVALKAHLRGEST-SEELEDLLEAGLTEE 154 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---hhHHHHHHHHHHHHHHHHHHhcCCCh-hhhhhhhhhccchHH
Confidence 99999999999999999999999999999999643 23789999999999999999998754 44576766 6655
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHc----ccCChhhHHHHHHHHHHHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHh
Q 015152 251 LAIVLDSKHRPRCIIEFISQSLQL----LNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTL 326 (412)
Q Consensus 251 l~~l~~~~n~P~~il~~l~~~l~~----~~l~~~~~~~m~~~l~~l~d~~G~cERI~~TPiP~sYt~h~~~fl~lylllL 326 (412)
.+.+.++.|+|++++..+++.+++ |.+++....+|++.++++.+++|+||||++||||++|++|+++++++|++++
T Consensus 155 ~~~l~~~~~~p~~i~~~~~~~l~~~~~~g~~~~~~~~~l~~~l~~l~~~~g~~eri~~TPiP~~Y~~~~~~~l~~y~~~l 234 (293)
T PF01062_consen 155 ERRLESADNPPNWILIQWSQRLREARREGLIDSFQLAQLDNELNALRDAQGGCERIKNTPIPFAYTQHLSRFLYIYLLLL 234 (293)
T ss_pred HHHHHhhcCcHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHhhhheeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 558888899999999888877754 5689999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCC----CCHHHHHHHHHHHHHH
Q 015152 327 PIILWDDCHWIVVPATFISAASLFCIEEVGVLIEEPFPM----LALDELCNLVQSNIQE 381 (412)
Q Consensus 327 Pf~Lv~~~gW~tip~t~lva~~llGie~Ig~eIEePFg~----LPLd~ic~~Ie~~l~e 381 (412)
||++++++||++||++++++|+|+|+|+||+|||||||. ||||++|++||+|++|
T Consensus 235 Pf~l~~~~~~~~~~~~~l~~~~~~gl~~ig~~ledPFg~d~~dlpl~~~~~~ie~~l~~ 293 (293)
T PF01062_consen 235 PFGLVDSLGWLTPPITFLVSFFFLGLEEIGEELEDPFGNDPNDLPLDAICRTIERNLRQ 293 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCcCcHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999985 9999999999999975
No 3
>KOG3547 consensus Bestrophin (Best vitelliform macular dystrophy-associated protein) [General function prediction only]
Probab=99.85 E-value=3e-20 Score=191.44 Aligned_cols=259 Identities=13% Similarity=0.136 Sum_probs=194.5
Q ss_pred ccchhHHHHHHhcchhhHhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccccCCchhhhhhhHHHHHHHhcchhHH
Q 015152 98 SSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASY 177 (412)
Q Consensus 98 s~~R~~~~ll~~~~gsV~~~i~~~vl~~~~~a~~V~~l~~~~~~~~~p~~~p~l~~~~~p~sllg~aLsLLLvFRtNsaY 177 (412)
+....+.++++.|+|||++.|+.+++++.+...+|.+++++.........++.+......+ .-.++|+|+|||..++..
T Consensus 12 ~~~~~f~kll~rWkGSiwKai~~el~~~l~~Y~~i~~iYR~~l~~~qq~~Fe~~~~~~d~~-~~~iPLtFmLGFfVt~Vv 90 (450)
T KOG3547|consen 12 SYSFTFLKLLLRWKGSIWKAIWKELLIWLILYYIISVIYRFALTESQQETFEKFVMYCDSR-LDFIPLTFMLGFFVTIVV 90 (450)
T ss_pred hccHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc-cccccchHhhhhhHHHHH
Confidence 4566788999999999999999999999999999998888543222222233332211111 123489999999999999
Q ss_pred HHHHHHHHHhhHHHHhHHHHHHHHHhcCCCCC--chHHHHHHHHHHH-HHHH-----HHHhcccCCCCCchhH--hhhcC
Q 015152 178 SRFVDGKKAWTQIIAGTNDFATMVISGTDNST--DECIKDSLLRYIM-AFPV-----ALKGHVICDSDVSGDL--QDLLD 247 (412)
Q Consensus 178 ~RwwEaRk~WG~ivn~sR~lar~~~~~~~~~~--d~~~~~~l~r~li-Af~~-----aLk~hLR~~~~~~~eL--~~lL~ 247 (412)
+|||+.-..-|.+ ++++..+++++++.+ ....|+.++||++ +-+. ++|-..|. ++ .+.+ +|+|+
T Consensus 91 ~RW~~~f~nig~i----d~~a~~vs~~i~g~d~~~r~~RRtIiRY~vLsqvLv~RdIS~~VrkRF-Pt-~d~lv~AG~mt 164 (450)
T KOG3547|consen 91 DRWWKQFRNIGWI----DNLALLVSAYIPGTDERARLIRRTIIRYLVLSQVLVFRDISMKVRKRF-PT-LDHLVEAGLMT 164 (450)
T ss_pred HHHHHHHhccCch----HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-hHHHHHhcCCc
Confidence 9999999999999 688888889998743 2346788888884 3332 33334443 22 3344 78999
Q ss_pred HhHHHHHhcC---CC-c---H-HHHHHHHHHHHHcccCChhhHHHHHHHHHHHHhhhhccccccC---CCCchhHHHHHH
Q 015152 248 ADDLAIVLDS---KH-R---P-RCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGVCEQLMG---IPIPLSYTRLTS 316 (412)
Q Consensus 248 ~~El~~l~~~---~n-~---P-~~il~~l~~~l~~~~l~~~~~~~m~~~l~~l~d~~G~cERI~~---TPiP~sYt~h~~ 316 (412)
++|++.+.+. .| + | +|+.+.+.++.++|.+.+.- .++..+.++.+...+|+.+.+ .|||++|+|.+.
T Consensus 165 ~~E~~~~~~~~~~~~~kyw~Pi~Wa~sl~~~a~~~g~i~~d~--~~~~~~~ei~~fR~~l~~L~~yDwVpIPL~YpQvV~ 242 (450)
T KOG3547|consen 165 EEELDILENIVDSKYMKYWVPINWAFSLLRKARKEGRIESDY--LYNSLLGEIKKFRTGLSLLCNYDWVPIPLVYPQVVF 242 (450)
T ss_pred HHHHHHHHhcccccccceeecHHHHHHHHHHHHHcCCccccH--HHHHHHHHHHHHHHhhccccCCCceeccccccceee
Confidence 9999988543 34 2 5 69999999999999884432 334445566666666777766 999999999999
Q ss_pred HHHHHHHHHhhhH--hhh-------cCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 015152 317 RFLVLWHLTLPII--LWD-------DCHWIVVPATFISAASLFCIEEVGVLIEEPFPM 365 (412)
Q Consensus 317 ~fl~lylllLPf~--Lv~-------~~gW~tip~t~lva~~llGie~Ig~eIEePFg~ 365 (412)
..+.+|.++.=|+ ..+ ..+++.|.+|.+...+++|+.++|+.+-||||.
T Consensus 243 lAVr~YF~~cL~~RQ~l~~~~~~~~~id~~fPi~T~lQFiF~vGWmKVaE~LlNP~GE 300 (450)
T KOG3547|consen 243 LAVRSYFFICLFGRQYLDRDDSKKTEIDLYFPIMTILQFIFYVGWLKVAEVLLNPLGE 300 (450)
T ss_pred eehHHhHHHHhhccccCCcccccccccceeehhHHHHHHHHHhhHHHHHHHHhCCCCC
Confidence 9999998887776 222 467999999999999999999999999999994
No 4
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=97.31 E-value=0.052 Score=51.08 Aligned_cols=67 Identities=19% Similarity=0.347 Sum_probs=52.0
Q ss_pred hhhhhhHHHHHHHhcchhHHHHHHHHHHHhhHHHHhHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHH
Q 015152 158 YQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVAL 228 (412)
Q Consensus 158 ~sllg~aLsLLLvFRtNsaY~RwwEaRk~WG~ivn~sR~lar~~~~~~~~~~d~~~~~~l~r~liAf~~aL 228 (412)
++.+|+..|++|+|=.+.+|+|+.++++.--.=.+..+++.+.+..+...+. ++++...+..|..++
T Consensus 2 ~~~vg~l~al~laf~~~~~~~~~~~a~~~v~~EA~al~~l~~~~~~lp~~~~----~~~~r~~l~~Y~~~v 68 (209)
T PF14023_consen 2 FGVVGVLFALLLAFTISSAWSRYDNARQAVNQEANALGTLYRLLASLPEPPD----RDEIRALLRAYTRAV 68 (209)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCch----hHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999887641221 334445555555554
No 5
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=51.42 E-value=39 Score=28.00 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcccCCCCCchhHhhhcCHhHHHHHhcCCCc-HHHHHHHHHHHHHcccCChhhHHHHHHHHHHHHhhhh
Q 015152 219 RYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHR-PRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIG 297 (412)
Q Consensus 219 r~liAf~~aLk~hLR~~~~~~~eL~~lL~~~El~~l~~~~n~-P~~il~~l~~~l~~~~l~~~~~~~m~~~l~~l~d~~G 297 (412)
+.+-||.--+|.-|+.. -+-..+..++++++++.+.+.+|+ |..+++..-..+.+..-.++-+..+|..-+ .+..|
T Consensus 6 ~nL~af~~yi~ktl~P~-yIl~~m~~~~~~e~v~~I~aEe~kg~~~AaqlfL~~l~~lee~GWFqafLDaL~~--agY~g 82 (89)
T cd08816 6 RNLQRFRDYIKKILRPS-YILGFMTTWLEDEEVERILSEEEKGVTSAAQLFLDYVLKLEEEGWFQAFLDALYA--AGYTG 82 (89)
T ss_pred HHHHHHHHHHHHhhchH-HHHHHHHHhcCHHHHHHHHHHhccChHHHHHHHHHHHHHHccccHHHHHHHHHHh--cCccc
Confidence 34557887888888742 245678899999999999887665 777766665555544333333333332222 12455
Q ss_pred cccccc
Q 015152 298 VCEQLM 303 (412)
Q Consensus 298 ~cERI~ 303 (412)
=||-|.
T Consensus 83 l~eai~ 88 (89)
T cd08816 83 LCEAIE 88 (89)
T ss_pred HHHHhc
Confidence 666664
No 6
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=42.56 E-value=19 Score=32.53 Aligned_cols=38 Identities=34% Similarity=0.490 Sum_probs=30.3
Q ss_pred hhhHHHHHHhhC-----CCchhhhhhhhccccccCCChhhHhhhh
Q 015152 58 KTLTLISVLRAI-----PDWADRVKERGVKQKRTLYSHEKWVEHR 97 (412)
Q Consensus 58 ~~~~~~~~~~~~-----~~~~d~~~e~~~~~~r~~y~~~~W~~hr 97 (412)
..+.+.+.|+.. |+|+|-+|-+..+-+.+. .+||...|
T Consensus 12 lI~~lA~~LK~~~kv~pP~wa~~vKTG~~kE~~P~--~~DWwY~R 54 (147)
T COG2238 12 LIEALASYLKETGKVKPPEWADIVKTGVHKERPPE--QEDWWYVR 54 (147)
T ss_pred HHHHHHHHHHhcCCcCChhhhhhhhccccccCCCC--CCchHHHH
Confidence 566777777765 999999999888877777 78888654
No 7
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=38.70 E-value=2e+02 Score=27.20 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=21.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhhHhhh
Q 015152 305 IPIPLSYTRLTSRFLVLWHLTLPIILWD 332 (412)
Q Consensus 305 TPiP~sYt~h~~~fl~lylllLPf~Lv~ 332 (412)
.|+=-+....+..++...+-++||.+.+
T Consensus 130 ~p~~~al~~~~sf~lg~liPllp~~~~~ 157 (213)
T PF01988_consen 130 SPWKAALATFLSFILGGLIPLLPYFFLP 157 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555566667777777788889999987
No 8
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=36.05 E-value=1.3e+02 Score=25.06 Aligned_cols=67 Identities=13% Similarity=-0.061 Sum_probs=40.8
Q ss_pred hhHHHHHHhcchhhHhhhHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccccCCchhhhhhhHHHHHHHhcchhHHHH
Q 015152 101 RHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSR 179 (412)
Q Consensus 101 R~~~~ll~~~~gsV~~~i~~~vl~~~~~a~~V~~l~~~~~~~~~p~~~p~l~~~~~p~sllg~aLsLLLvFRtNsaY~R 179 (412)
-.+..+++.+==-.+++.|...+++.++.+++.++...+.. .......++.+++++.+++-|.-|-|
T Consensus 38 fnw~Af~f~~~w~l~r~mw~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~l~~~~~~g~~~n~~y~~ 104 (108)
T PF10947_consen 38 FNWWAFFFGPLWLLYRKMWLYAIIFLALLVALAIILILLGF------------PPGLGLGLSLAISLFFGMFANYWYYR 104 (108)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555444456777887777777766666666543210 11111256778889999998888765
No 9
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=27.86 E-value=4.2e+02 Score=25.71 Aligned_cols=49 Identities=10% Similarity=-0.117 Sum_probs=29.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhhHhhhcC--CcchhHHHHHHHHHHHHHH
Q 015152 305 IPIPLSYTRLTSRFLVLWHLTLPIILWDDC--HWIVVPATFISAASLFCIE 353 (412)
Q Consensus 305 TPiP~sYt~h~~~fl~lylllLPf~Lv~~~--gW~tip~t~lva~~llGie 353 (412)
.|+=-+.+..++.++...+-+|||.+.... .+.+-.+..+++.+++|.-
T Consensus 149 ~P~~aAl~sflsF~ig~liPLLPf~~~~~~~~~~~~s~~~~~~~L~~lG~~ 199 (234)
T cd02433 149 NPWSAAVSSFLLFALGALIPVLPFLFGMSGLAALVLSVLLVGLALLATGAV 199 (234)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 455556677777777778888999865432 2223333444555556654
No 10
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=26.72 E-value=69 Score=30.50 Aligned_cols=84 Identities=20% Similarity=0.082 Sum_probs=50.4
Q ss_pred CCcCcccccc-cCCCCCChhhHHHHHHhhCCCchhhhhhhhc-------cccccCCChhhHhhhhccchhHHHHHHhcch
Q 015152 41 LTFKTLSCLE-SQSQSETKTLTLISVLRAIPDWADRVKERGV-------KQKRTLYSHEKWVEHRSSLRHVRHLLSSLSS 112 (412)
Q Consensus 41 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~~-------~~~r~~y~~~~W~~hrs~~R~~~~ll~~~~g 112 (412)
|+.+|++++- -||++- +...+++|++. .|.+.+++. ...+.+-.+.+|..|+...-+- +.++
T Consensus 34 Pk~~s~~~lVvlGSGGH--T~EMlrLl~~l---~~~y~~r~yI~a~tD~mS~~k~~~F~~~~a~~~a~~~~-----ipRs 103 (211)
T KOG3339|consen 34 PKDKSLSTLVVLGSGGH--TGEMLRLLEAL---QDLYSPRSYIAADTDEMSEQKARSFELSLAHCKAKNYE-----IPRS 103 (211)
T ss_pred CcCCcceEEEEEcCCCc--HHHHHHHHHHH---HhhcCceEEEEecCchhhHHHHHhhhccccccchhhee-----cchh
Confidence 3557765543 344443 56788888887 666665443 1123333467788776544332 6678
Q ss_pred hhHhhhHHHHHHHHHHHHHHHH
Q 015152 113 RVILSLIPPVIAFTMVAVVIAS 134 (412)
Q Consensus 113 sV~~~i~~~vl~~~~~a~~V~~ 134 (412)
+=+++-|..-..-+++|.+.++
T Consensus 104 ReVgQS~ltSv~Tti~all~s~ 125 (211)
T KOG3339|consen 104 REVGQSWLTSVFTTIWALLQSF 125 (211)
T ss_pred hhhhhhhhhhHHHHHHHHHHHh
Confidence 8887777766666666655555
No 11
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=24.88 E-value=2.2e+02 Score=25.15 Aligned_cols=63 Identities=13% Similarity=0.034 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhhhHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhhCCC---C--CCCHHHHHHHH
Q 015152 313 RLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEEVGVLIEEPF---P--MLALDELCNLV 375 (412)
Q Consensus 313 ~h~~~fl~lylllLPf~Lv~~~gW~tip~t~lva~~llGie~Ig~eIEePF---g--~LPLd~ic~~I 375 (412)
+-.++=+++.++.+|++++-...+.......+..+..+..|-+-+.||.== + ..||...++++
T Consensus 30 ~afR~e~~~~~~~i~~~~~l~~~~~e~lll~~si~lvl~vEllNTAIEa~VD~~s~e~helak~AKD~ 97 (123)
T COG0818 30 AAFRQELLAALVALVLAFFLGVSAIEWLLLILSIFLVLIVELLNTAIEAVVDLISPEYHELAKRAKDM 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence 445666788899999999999988888788888888888999888887422 2 24555554443
No 12
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=23.66 E-value=1.1e+02 Score=23.11 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhHhhhcC
Q 015152 309 LSYTRLTSRFLVLWHLTLPIILWDDC 334 (412)
Q Consensus 309 ~sYt~h~~~fl~lylllLPf~Lv~~~ 334 (412)
.+|+-++...+.+|+++.-+..++.-
T Consensus 19 vtyaDlmTLLl~fFVlL~s~s~~d~~ 44 (58)
T PF13677_consen 19 VTYADLMTLLLAFFVLLFSMSSVDKE 44 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 67888888888888888877776643
No 13
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=20.83 E-value=1.6e+02 Score=21.47 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=23.4
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 015152 113 RVILSLIPPVIAFTMVAVVIASYNSALDS 141 (412)
Q Consensus 113 sV~~~i~~~vl~~~~~a~~V~~l~~~~~~ 141 (412)
+.|+.+++|+.+++..+++++.+.+++..
T Consensus 6 ~lWKg~~Kpl~~~~~~~~~~~~~~Hyi~v 34 (44)
T PF09163_consen 6 TLWKGVLKPLGAAGMGATAAAGFFHYITV 34 (44)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45788999999999999888887776543
Done!