Query 015152
Match_columns 412
No_of_seqs 179 out of 719
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 07:36:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_T 40S ribosomal protein S 26.6 23 0.00078 30.8 1.4 39 58-97 14-57 (144)
2 2yka_B ORF57 protein, 52 kDa i 23.3 26 0.00088 21.4 0.0 14 69-82 8-21 (26)
3 2xzm_T RPS19E; ribosome, trans 18.0 37 0.0013 29.9 1.0 37 59-97 19-60 (155)
4 3iz6_S 40S ribosomal protein S 14.1 54 0.0018 28.6 1.0 27 69-97 33-59 (146)
5 4gof_A Small glutamine-rich te 14.0 3.2E+02 0.011 19.5 5.0 37 262-298 7-43 (52)
6 2zt9_E Cytochrome B6-F complex 10.4 1.1E+02 0.0039 19.7 1.4 14 160-173 14-27 (31)
7 1vf5_E Protein PET L; photosyn 10.1 1.1E+02 0.0036 19.9 1.2 14 160-173 15-28 (32)
8 1hji_B NUN-protein; bacterioph 9.8 3E+02 0.01 16.5 3.0 20 211-230 6-25 (26)
9 4asv_A Small glutamine-rich te 9.3 4.8E+02 0.016 20.8 5.0 37 262-298 24-60 (92)
10 2lxb_A Small glutamine-rich te 9.1 5.3E+02 0.018 19.7 5.0 37 262-298 12-48 (74)
No 1
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=26.55 E-value=23 Score=30.85 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=28.5
Q ss_pred hhhHHHHHHhh-----CCCchhhhhhhhccccccCCChhhHhhhh
Q 015152 58 KTLTLISVLRA-----IPDWADRVKERGVKQKRTLYSHEKWVEHR 97 (412)
Q Consensus 58 ~~~~~~~~~~~-----~~~~~d~~~e~~~~~~r~~y~~~~W~~hr 97 (412)
..+++.+.|+. +|+|+|-+|-+..+ -++-||.|.|...|
T Consensus 14 fI~~~A~~LK~~gki~~P~W~d~vKTg~~k-El~P~d~D~W~Y~R 57 (144)
T 3u5c_T 14 FINAYASFLQRQGKLEVPGYVDIVKTSSGN-EMPPQDAEGWFYKR 57 (144)
T ss_dssp HHHHHHHHHHHHCCCCCTTTTTSCCSCTTC-SSCCSSCSSSHHHH
T ss_pred HHHHHHHHHHHcCCCCCCchHhHhhccccc-cCCCCCCcchHHHH
Confidence 34555566653 79999999997766 66778887798765
No 2
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=23.29 E-value=26 Score=21.38 Aligned_cols=14 Identities=43% Similarity=0.850 Sum_probs=11.6
Q ss_pred CCCchhhhhhhhcc
Q 015152 69 IPDWADRVKERGVK 82 (412)
Q Consensus 69 ~~~~~d~~~e~~~~ 82 (412)
-|.|+|.+.|...+
T Consensus 8 r~nWs~RV~E~~~~ 21 (26)
T 2yka_B 8 KTSWADRVREAAAQ 21 (26)
Confidence 58899999997665
No 3
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=17.99 E-value=37 Score=29.87 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=25.3
Q ss_pred hhHHHHHHh-----hCCCchhhhhhhhccccccCCChhhHhhhh
Q 015152 59 TLTLISVLR-----AIPDWADRVKERGVKQKRTLYSHEKWVEHR 97 (412)
Q Consensus 59 ~~~~~~~~~-----~~~~~~d~~~e~~~~~~r~~y~~~~W~~hr 97 (412)
.+.+++.|+ .+|+|+|-+|-+..+ -++-|| +||...|
T Consensus 19 I~~~A~~LKk~gki~~P~W~d~vKTg~~K-ElaP~d-~DW~YiR 60 (155)
T 2xzm_T 19 IREYASHLKKANKLSIPEFTQWTTTSVAR-ELAPQD-SDWVYIR 60 (155)
T ss_dssp HHHHHHHTTSSCCSCCCHHHHSCCCSSSC-SSCCSS-TTHHHHH
T ss_pred HHHHHHHHHhcCCCCCCchHhhhhccccc-cCCCCC-CchHHHH
Confidence 444445554 369999999997766 566677 4588654
No 4
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=14.14 E-value=54 Score=28.56 Aligned_cols=27 Identities=33% Similarity=0.706 Sum_probs=20.6
Q ss_pred CCCchhhhhhhhccccccCCChhhHhhhh
Q 015152 69 IPDWADRVKERGVKQKRTLYSHEKWVEHR 97 (412)
Q Consensus 69 ~~~~~d~~~e~~~~~~r~~y~~~~W~~hr 97 (412)
+|+|+|-+|-+..+ -++-||. ||...|
T Consensus 33 ~P~W~d~vKTg~~K-El~P~d~-DW~Y~R 59 (146)
T 3iz6_S 33 LPEWVDIVKTARFK-ELPPYDP-DWYYTR 59 (146)
T ss_dssp CTTTGGGCCSSSSC-SSSTHHH-HTHHHH
T ss_pred CCchHHHhhccccc-cCCCCCC-chHHHH
Confidence 69999999997766 5566666 588654
No 5
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=14.03 E-value=3.2e+02 Score=19.46 Aligned_cols=37 Identities=32% Similarity=0.555 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcccCChhhHHHHHHHHHHHHhhhhc
Q 015152 262 RCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGV 298 (412)
Q Consensus 262 ~~il~~l~~~l~~~~l~~~~~~~m~~~l~~l~d~~G~ 298 (412)
..+++.+++.+..+.+++...-.|+-.++.+.++++-
T Consensus 7 ~sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v 43 (52)
T 4gof_A 7 YAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGV 43 (52)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCC
Confidence 4678889999999999998888999999999988763
No 6
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=10.39 E-value=1.1e+02 Score=19.65 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=11.6
Q ss_pred hhhhHHHHHHHhcc
Q 015152 160 LTAPALALLLVFRT 173 (412)
Q Consensus 160 llg~aLsLLLvFRt 173 (412)
.+++++|+++++|.
T Consensus 14 ~~~iA~GL~fGLrs 27 (31)
T 2zt9_E 14 FTGIAAGLLFGLRS 27 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46889999999984
No 7
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=10.11 E-value=1.1e+02 Score=19.94 Aligned_cols=14 Identities=7% Similarity=0.365 Sum_probs=11.7
Q ss_pred hhhhHHHHHHHhcc
Q 015152 160 LTAPALALLLVFRT 173 (412)
Q Consensus 160 llg~aLsLLLvFRt 173 (412)
.+++|+|+++++|.
T Consensus 15 ~f~iA~GL~fGlrs 28 (32)
T 1vf5_E 15 FFGIAVGIIFAIKS 28 (32)
T ss_dssp HHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 46889999999985
No 8
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=9.78 E-value=3e+02 Score=16.47 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 015152 211 ECIKDSLLRYIMAFPVALKG 230 (412)
Q Consensus 211 ~~~~~~l~r~liAf~~aLk~ 230 (412)
...++++.||---.+||||.
T Consensus 6 srdrrriarwekriayalkn 25 (26)
T 1hji_B 6 SRDRRRIARWEKRIAYALKN 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHhc
Confidence 35678899998888888874
No 9
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=9.34 E-value=4.8e+02 Score=20.79 Aligned_cols=37 Identities=16% Similarity=0.415 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcccCChhhHHHHHHHHHHHHhhhhc
Q 015152 262 RCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGV 298 (412)
Q Consensus 262 ~~il~~l~~~l~~~~l~~~~~~~m~~~l~~l~d~~G~ 298 (412)
..|++.+++.++.+.+++...-.|+-.++++.++++-
T Consensus 24 ~sIIdFL~~sv~~~~ls~D~~ESLEVAIqCI~~AF~V 60 (92)
T 4asv_A 24 ALIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGF 60 (92)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCC
Confidence 4788999999999999998888999999999988773
No 10
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=9.07 E-value=5.3e+02 Score=19.66 Aligned_cols=37 Identities=16% Similarity=0.415 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHcccCChhhHHHHHHHHHHHHhhhhc
Q 015152 262 RCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGV 298 (412)
Q Consensus 262 ~~il~~l~~~l~~~~l~~~~~~~m~~~l~~l~d~~G~ 298 (412)
..|++.+++.+..+.+++...-.|+-.++++.++++-
T Consensus 12 ~sIi~FL~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v 48 (74)
T 2lxb_A 12 ALIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGF 48 (74)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCC
Confidence 4678888999999999988888999999999888763
Done!