Query 015152
Match_columns 412
No_of_seqs 179 out of 719
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 07:36:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015152.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015152hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qjta_ a.39.1.6 (A:) Eps15 {M 20.8 78 0.0057 22.9 5.5 68 243-310 25-95 (99)
2 d1kqfb2 f.23.22.1 (B:246-290) 19.3 55 0.004 21.2 3.6 30 113-142 6-35 (45)
3 d2axth1 f.23.33.1 (H:2-65) Pho 16.4 79 0.0057 21.8 4.0 29 334-362 22-50 (64)
4 d1jb0i_ f.23.17.1 (I:) Subunit 14.6 40 0.0029 20.9 1.8 27 325-353 9-35 (38)
5 d2v7fa1 a.4.5.84 (A:2-150) Rib 11.4 34 0.0025 27.8 1.0 37 59-97 12-53 (149)
6 d1iwga8 f.35.1.1 (A:513-566,A: 6.9 3.1E+02 0.023 22.3 5.6 26 112-137 20-45 (222)
7 d1hc8a_ a.4.7.1 (A:) Ribosomal 6.4 3.1E+02 0.022 19.0 4.5 30 352-382 39-69 (74)
8 d1a6sa_ a.61.1.4 (A:) GAG poly 6.2 1.2E+02 0.0087 22.1 2.0 36 51-95 18-53 (87)
9 d1ni5a4 d.229.1.1 (A:227-314) 4.9 4E+02 0.029 18.2 4.5 36 260-295 24-59 (88)
10 d1sknp_ a.37.1.1 (P:) Skn-1 {C 4.6 2.6E+02 0.019 19.6 3.0 25 353-377 7-36 (74)
No 1
>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.78 E-value=78 Score=22.92 Aligned_cols=68 Identities=18% Similarity=0.163 Sum_probs=45.9
Q ss_pred hhhcCHhHHHHHhcCCCcHHHHHHHHHHHHHc---ccCChhhHHHHHHHHHHHHhhhhccccccCCCCchh
Q 015152 243 QDLLDADDLAIVLDSKHRPRCIIEFISQSLQL---LNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLS 310 (412)
Q Consensus 243 ~~lL~~~El~~l~~~~n~P~~il~~l~~~l~~---~~l~~~~~~~m~~~l~~l~d~~G~cERI~~TPiP~s 310 (412)
.|.++.+|+..+....+.|...+..|-+.... |.++-.++..+...+........--..+..+++|.+
T Consensus 25 ~G~i~~~e~~~~l~~s~L~~~~L~~i~~~~D~d~dG~L~~~EF~~am~Li~~~q~g~~l~~~~l~~~~p~P 95 (99)
T d1qjta_ 25 TGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNGLEVSLSSLSLAVPPP 95 (99)
T ss_dssp SSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTTCCSSGGGCSSCCCCC
T ss_pred CCcccHHHHHHHHHHcCCcHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHcCCCCCccccccCCCCC
Confidence 35677788888888888888888777777643 678877776665555554444433456666777654
No 2
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=19.35 E-value=55 Score=21.24 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=23.7
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 015152 113 RVILSLIPPVIAFTMVAVVIASYNSALDSH 142 (412)
Q Consensus 113 sV~~~i~~~vl~~~~~a~~V~~l~~~~~~~ 142 (412)
..|+.+++|+.+.+..+++++.+.+++..|
T Consensus 6 ~lWKgv~Kpl~~~~~~~~~~~~~fHYv~vG 35 (45)
T d1kqfb2 6 SLWKGALKPLAAAGFIATFAGLIFHYIGIG 35 (45)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhheeC
Confidence 457889999999999998888777766443
No 3
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.44 E-value=79 Score=21.83 Aligned_cols=29 Identities=10% Similarity=0.075 Sum_probs=21.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhhCC
Q 015152 334 CHWIVVPATFISAASLFCIEEVGVLIEEP 362 (412)
Q Consensus 334 ~gW~tip~t~lva~~llGie~Ig~eIEeP 362 (412)
-||.|-|++.+....|.-..-|=-||-|+
T Consensus 22 PGWGTTplMgv~m~Lf~vfl~iiLeiYNs 50 (64)
T d2axth1 22 PGWGTTPLMAVFMGLFLVFLLIILEIYNS 50 (64)
T ss_dssp STTTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 48999998888777777776666666654
No 4
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=14.61 E-value=40 Score=20.91 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=16.6
Q ss_pred HhhhHhhhcCCcchhHHHHHHHHHHHHHH
Q 015152 325 TLPIILWDDCHWIVVPATFISAASLFCIE 353 (412)
Q Consensus 325 lLPf~Lv~~~gW~tip~t~lva~~llGie 353 (412)
.||..+++-.+|+.+.++. +..|+-||
T Consensus 9 yLPwI~iPvv~wl~p~vvM--glLFiyIE 35 (38)
T d1jb0i_ 9 FLPWIFIPVVCWLMPTVVM--GLLFLYIE 35 (38)
T ss_dssp THHHHHHHHHHTHHHHHHH--HHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHH--HHHheeee
Confidence 3788888888888765443 34444444
No 5
>d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus abyssi [TaxId: 29292]}
Probab=11.37 E-value=34 Score=27.83 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=21.4
Q ss_pred hhHHHHHHhh-----CCCchhhhhhhhccccccCCChhhHhhhh
Q 015152 59 TLTLISVLRA-----IPDWADRVKERGVKQKRTLYSHEKWVEHR 97 (412)
Q Consensus 59 ~~~~~~~~~~-----~~~~~d~~~e~~~~~~r~~y~~~~W~~hr 97 (412)
.+++.+.|+. +|+|+|-+|-+..+.+-| ++ +||...|
T Consensus 12 I~~lA~~LK~~~ki~~P~W~~~vKTg~~kE~~P-~~-~DW~y~R 53 (149)
T d2v7fa1 12 VERVAQRLKEIPEIKPPEWAPFVKTGRHKERLP-EQ-EDWWYYR 53 (149)
T ss_dssp HHHHHHHHTTCTTCCCCSCGGGCCC------CH-HH-HTHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcchhhhcccccccCCC-CC-CchHHHH
Confidence 4455555543 689999999987774444 55 6788654
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.85 E-value=3.1e+02 Score=22.28 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=17.2
Q ss_pred hhhHhhhHHHHHHHHHHHHHHHHHhh
Q 015152 112 SRVILSLIPPVIAFTMVAVVIASYNS 137 (412)
Q Consensus 112 gsV~~~i~~~vl~~~~~a~~V~~l~~ 137 (412)
+++.++....+..+.++...+.+...
T Consensus 20 ~~~~~r~~r~~~~y~~l~~g~~~~f~ 45 (222)
T d1iwga8 20 GGILRSTGRYLVLYLIIVVGMAYLFV 45 (222)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHhhhheeeec
Confidence 55666666677777777666666654
No 7
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.40 E-value=3.1e+02 Score=19.04 Aligned_cols=30 Identities=7% Similarity=0.337 Sum_probs=20.9
Q ss_pred HHHHHHH-hhCCCCCCCHHHHHHHHHHHHHHH
Q 015152 352 IEEVGVL-IEEPFPMLALDELCNLVQSNIQEA 382 (412)
Q Consensus 352 ie~Ig~e-IEePFg~LPLd~ic~~Ie~~l~e~ 382 (412)
+.|||.. ++| ....+|+..|+.|..-.+.|
T Consensus 39 i~eIAk~K~~D-l~~~~l~~a~k~v~GtArSM 69 (74)
T d1hc8a_ 39 VREIAELKMPD-LNAASIEAAMRMIEGTARSM 69 (74)
T ss_dssp HHHHHHHSGGG-CCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-cCCCCHHHHHHHHHhhHhhc
Confidence 5667766 555 55588999998887666543
No 8
>d1a6sa_ a.61.1.4 (A:) GAG polyprotein M-domain {Rous sarcoma virus [TaxId: 11886]}
Probab=6.16 E-value=1.2e+02 Score=22.06 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=27.2
Q ss_pred cCCCCCChhhHHHHHHhhCCCchhhhhhhhccccccCCChhhHhh
Q 015152 51 SQSQSETKTLTLISVLRAIPDWADRVKERGVKQKRTLYSHEKWVE 95 (412)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~~~~~r~~y~~~~W~~ 95 (412)
..+++.....+++|+|+ +|..-..+..+|++..|..
T Consensus 18 k~spskKei~a~ls~L~---------~eG~l~sP~di~~pg~Wd~ 53 (87)
T d1a6sa_ 18 KTSPSKKEIGAMLSLLQ---------KEGLLMSPSDLYSPGSWDP 53 (87)
T ss_dssp TTSSCSSHHHHHHHTGG---------GTTCTTCGGGGGSTTTTHH
T ss_pred CCCCcHHHHHHHHHHHH---------HccCcCCchhhcCCCchHH
Confidence 34555556788888886 5666677899999999984
No 9
>d1ni5a4 d.229.1.1 (A:227-314) tRNA-Ile-lysidine synthetase, TilS, substrate-binding domain {Escherichia coli [TaxId: 562]}
Probab=4.95 E-value=4e+02 Score=18.22 Aligned_cols=36 Identities=11% Similarity=-0.083 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHcccCChhhHHHHHHHHHHHHhh
Q 015152 260 RPRCIIEFISQSLQLLNLEATKQNMLESKISCFHEG 295 (412)
Q Consensus 260 ~P~~il~~l~~~l~~~~l~~~~~~~m~~~l~~l~d~ 295 (412)
.+......++.+++...+..+...++++.+.++..+
T Consensus 24 s~~R~~nlLR~WL~~~~~~~Ps~~~L~ei~~ql~~a 59 (88)
T d1ni5a4 24 SDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALA 59 (88)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Confidence 356777888999988766666666777777777554
No 10
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=4.59 E-value=2.6e+02 Score=19.56 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=18.9
Q ss_pred HHHHHHhhCCCCC-----CCHHHHHHHHHH
Q 015152 353 EEVGVLIEEPFPM-----LALDELCNLVQS 377 (412)
Q Consensus 353 e~Ig~eIEePFg~-----LPLd~ic~~Ie~ 377 (412)
|.-|.++.=||+. ||+++|-+.+..
T Consensus 7 e~ra~~~~iPfs~~~Iv~lpv~eFne~l~~ 36 (74)
T d1sknp_ 7 EQLASDNELPVSAFQISEMSLSELQQVLKN 36 (74)
T ss_dssp HHHHHHTTCSSCHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHcCCCccHHHHHHCCHHHHHHHHHh
Confidence 5668889999995 888887665543
Done!