Query 015154
Match_columns 412
No_of_seqs 143 out of 813
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 03:37:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02859 AMPKbeta_GBD_like AMP- 99.9 7.5E-24 1.6E-28 169.4 9.3 78 320-410 1-79 (79)
2 cd02861 E_set_proteins_like E 99.8 1.7E-18 3.7E-23 138.1 8.6 77 321-410 2-82 (82)
3 KOG1616 Protein involved in Sn 99.6 1.2E-15 2.7E-20 148.9 7.8 83 320-412 79-162 (289)
4 cd02858 Esterase_N_term Estera 99.2 4.5E-11 9.8E-16 96.7 9.1 77 320-409 5-84 (85)
5 cd02688 E_set E or "early" set 98.9 1E-08 2.2E-13 78.1 8.2 70 321-402 4-75 (83)
6 cd02854 Glycogen_branching_enz 98.4 1.1E-06 2.4E-11 73.9 7.6 68 321-400 5-86 (99)
7 PF02922 CBM_48: Carbohydrate- 98.3 6.1E-07 1.3E-11 70.7 4.2 59 321-390 11-74 (85)
8 cd02860 Pullulanase_N_term Pul 97.8 8.8E-05 1.9E-09 61.1 7.4 68 322-403 9-88 (100)
9 cd05808 CBM20_alpha_amylase Al 97.7 0.00017 3.7E-09 58.3 8.2 66 322-399 2-81 (95)
10 cd02855 Glycogen_branching_enz 97.5 0.00064 1.4E-08 55.2 8.4 77 322-409 22-105 (106)
11 PF00686 CBM_20: Starch bindin 97.4 0.0004 8.6E-09 56.9 6.4 58 321-386 2-68 (96)
12 COG0296 GlgB 1,4-alpha-glucan 97.4 0.0003 6.6E-09 76.3 6.5 67 319-397 34-108 (628)
13 cd05818 CBM20_water_dikinase P 97.2 0.0016 3.5E-08 53.7 8.0 67 321-400 2-80 (92)
14 PRK12313 glycogen branching en 97.2 0.0013 2.8E-08 70.5 8.5 67 321-399 38-111 (633)
15 cd05820 CBM20_novamyl Novamyl 97.1 0.0034 7.4E-08 52.7 9.2 70 320-401 2-90 (103)
16 cd05809 CBM20_beta_amylase Bet 97.1 0.003 6.5E-08 52.6 8.5 72 320-400 2-88 (99)
17 PRK12568 glycogen branching en 97.1 0.0017 3.7E-08 71.6 8.8 69 319-400 136-212 (730)
18 cd02856 Glycogen_debranching_e 97.0 0.0026 5.5E-08 52.9 7.2 53 322-388 10-66 (103)
19 cd05811 CBM20_glucoamylase Glu 97.0 0.0068 1.5E-07 50.4 9.5 74 320-401 6-93 (106)
20 cd05814 CBM20_Prei4 Prei4, N-t 97.0 0.0028 6E-08 54.4 7.3 55 322-386 2-66 (120)
21 PRK14706 glycogen branching en 96.8 0.0033 7.1E-08 68.3 8.0 67 321-400 38-112 (639)
22 cd02852 Isoamylase_N_term Isoa 96.8 0.0041 8.9E-08 52.7 6.9 59 322-391 8-73 (119)
23 PRK14705 glycogen branching en 96.8 0.0041 8.9E-08 72.0 9.0 66 319-396 636-709 (1224)
24 cd02853 MTHase_N_term Maltooli 96.7 0.0081 1.7E-07 48.3 7.8 73 321-409 8-82 (85)
25 PLN02447 1,4-alpha-glucan-bran 96.7 0.0074 1.6E-07 67.0 9.9 104 261-396 73-190 (758)
26 cd05467 CBM20 The family 20 ca 96.7 0.014 2.9E-07 47.0 8.8 46 330-386 12-65 (96)
27 cd05816 CBM20_DPE2_repeat2 Dis 96.6 0.019 4.1E-07 47.7 9.6 66 323-400 2-84 (99)
28 cd05817 CBM20_DSP Dual-specifi 96.6 0.0071 1.5E-07 50.4 7.0 45 330-386 12-62 (100)
29 cd05807 CBM20_CGTase CGTase, C 96.6 0.015 3.2E-07 48.4 8.7 74 320-401 2-90 (101)
30 cd05813 CBM20_genethonin_1 Gen 96.6 0.0085 1.8E-07 49.1 7.2 53 322-386 2-62 (95)
31 TIGR02402 trehalose_TreZ malto 96.6 0.0057 1.2E-07 64.9 7.5 70 323-409 1-73 (542)
32 PRK05402 glycogen branching en 96.6 0.0076 1.6E-07 66.0 8.6 67 321-398 131-204 (726)
33 PLN02316 synthase/transferase 96.4 0.034 7.5E-07 63.8 12.9 63 319-388 327-398 (1036)
34 cd05810 CBM20_alpha_MTH Glucan 96.0 0.04 8.6E-07 46.1 7.9 67 322-400 2-86 (97)
35 TIGR01515 branching_enzym alph 95.9 0.022 4.9E-07 61.2 8.0 68 321-400 28-103 (613)
36 PRK05402 glycogen branching en 95.7 0.02 4.3E-07 62.8 6.7 63 322-397 29-96 (726)
37 cd05815 CBM20_DPE2_repeat1 Dis 95.0 0.083 1.8E-06 43.8 6.7 65 323-396 2-81 (101)
38 TIGR02104 pulA_typeI pullulana 94.2 0.14 3.1E-06 55.0 7.7 66 322-400 20-95 (605)
39 PF03423 CBM_25: Carbohydrate 93.9 0.14 3E-06 42.4 5.4 63 322-392 3-76 (87)
40 cd05806 CBM20_laforin Laforin 93.7 0.5 1.1E-05 41.4 8.8 55 327-386 11-74 (112)
41 PRK10439 enterobactin/ferric e 92.7 0.55 1.2E-05 48.5 8.9 81 318-411 36-161 (411)
42 PLN02316 synthase/transferase 92.5 1.1 2.4E-05 51.9 11.8 56 320-386 490-557 (1036)
43 PLN02950 4-alpha-glucanotransf 92.3 0.76 1.6E-05 52.5 10.0 71 319-401 151-237 (909)
44 TIGR02100 glgX_debranch glycog 90.2 0.72 1.6E-05 50.9 7.0 55 322-390 15-75 (688)
45 PF11806 DUF3327: Domain of un 90.1 0.96 2.1E-05 39.7 6.4 79 321-410 2-111 (122)
46 PLN02950 4-alpha-glucanotransf 89.2 1.9 4.1E-05 49.4 9.5 67 321-396 9-90 (909)
47 TIGR02102 pullulan_Gpos pullul 87.1 1.5 3.3E-05 51.2 7.2 66 322-399 328-408 (1111)
48 PRK03705 glycogen debranching 86.2 1.5 3.2E-05 48.4 6.2 55 322-390 20-78 (658)
49 PLN02960 alpha-amylase 84.7 3.1 6.8E-05 47.7 8.0 59 322-387 129-198 (897)
50 TIGR02103 pullul_strch alpha-1 83.6 4 8.6E-05 46.9 8.3 68 321-400 135-216 (898)
51 cd02857 CD_pullulan_degrading_ 80.9 8.4 0.00018 31.6 7.3 58 321-386 16-79 (116)
52 PRK14510 putative bifunctional 74.6 9 0.00019 45.3 7.7 56 321-390 23-84 (1221)
53 COG1725 Predicted transcriptio 64.1 17 0.00038 32.7 5.6 47 62-110 14-61 (125)
54 PF00392 GntR: Bacterial regul 63.5 8 0.00017 29.5 3.0 31 62-92 3-34 (64)
55 PF03370 CBM_21: Putative phos 58.3 38 0.00083 29.0 6.5 72 322-393 22-105 (113)
56 PF10281 Ish1: Putative stress 56.2 19 0.00041 25.5 3.6 30 66-102 7-36 (38)
57 PLN03244 alpha-amylase; Provis 55.9 9.2 0.0002 43.9 3.0 60 322-387 132-201 (872)
58 PLN02877 alpha-amylase/limit d 54.4 41 0.00089 39.4 7.7 64 322-400 223-303 (970)
59 smart00345 HTH_GNTR helix_turn 53.6 16 0.00034 26.1 2.9 33 64-96 1-34 (60)
60 KOG0470 1,4-alpha-glucan branc 52.7 15 0.00033 41.7 3.9 41 323-374 115-157 (757)
61 KOG2264 Exostosin EXT1L [Signa 50.6 20 0.00044 40.1 4.4 63 246-308 98-167 (907)
62 PF01357 Pollen_allerg_1: Poll 50.3 33 0.00071 28.1 4.6 58 321-393 14-77 (82)
63 COG3794 PetE Plastocyanin [Ene 48.5 51 0.0011 29.8 5.9 52 318-383 59-111 (128)
64 TIGR02325 C_P_lyase_phnF phosp 46.4 26 0.00056 32.5 3.9 31 62-92 11-42 (238)
65 TIGR02404 trehalos_R_Bsub treh 45.0 28 0.0006 32.5 3.9 30 62-91 3-33 (233)
66 PF02903 Alpha-amylase_N: Alph 45.0 62 0.0013 27.6 5.7 67 322-396 22-100 (120)
67 TIGR03337 phnR transcriptional 41.4 51 0.0011 30.4 5.0 33 62-94 4-37 (231)
68 TIGR03503 conserved hypothetic 40.7 55 0.0012 34.5 5.6 42 335-389 152-195 (374)
69 TIGR02018 his_ut_repres histid 40.6 36 0.00079 31.7 3.9 30 62-91 4-34 (230)
70 PRK14999 histidine utilization 40.6 35 0.00076 32.1 3.9 31 61-91 14-45 (241)
71 PRK12423 LexA repressor; Provi 38.1 37 0.00079 31.7 3.5 43 61-113 8-52 (202)
72 KOG1263 Multicopper oxidases [ 34.6 28 0.00061 38.2 2.5 24 365-388 96-120 (563)
73 KOG3990 Uncharacterized conser 34.5 58 0.0013 33.2 4.4 45 238-284 217-261 (305)
74 PF08022 FAD_binding_8: FAD-bi 33.8 14 0.0003 31.0 0.0 14 19-38 47-60 (105)
75 cd01278 aprataxin_related apra 33.1 42 0.0009 27.5 2.7 34 77-111 42-75 (104)
76 PF11896 DUF3416: Domain of un 32.2 71 0.0015 30.4 4.4 40 341-393 55-99 (187)
77 PF01726 LexA_DNA_bind: LexA D 31.3 55 0.0012 26.0 3.0 26 62-91 9-34 (65)
78 PRK11402 DNA-binding transcrip 31.3 60 0.0013 30.5 3.8 30 62-91 12-42 (241)
79 PRK04984 fatty acid metabolism 31.2 62 0.0013 30.1 3.9 30 62-91 10-40 (239)
80 PRK09764 DNA-binding transcrip 31.1 61 0.0013 30.5 3.8 30 62-91 8-38 (240)
81 PF14347 DUF4399: Domain of un 29.6 87 0.0019 26.4 4.1 33 365-398 49-81 (87)
82 PF13473 Cupredoxin_1: Cupredo 29.1 1.2E+02 0.0025 25.1 4.8 16 367-382 74-90 (104)
83 cd06093 PX_domain The Phox Hom 27.9 1.9E+02 0.0042 22.6 5.7 85 25-121 14-98 (106)
84 TIGR02375 pseudoazurin pseudoa 26.9 2E+02 0.0044 25.3 6.1 16 321-336 23-38 (116)
85 PRK10079 phosphonate metabolis 26.5 78 0.0017 29.8 3.7 29 62-91 15-44 (241)
86 cd07377 WHTH_GntR Winged helix 26.2 1.2E+02 0.0025 22.0 3.9 34 62-95 4-38 (66)
87 KOG0045 Cytosolic Ca2+-depende 26.1 57 0.0012 36.3 3.1 27 375-401 114-143 (612)
88 PF07495 Y_Y_Y: Y_Y_Y domain; 26.0 67 0.0015 23.9 2.6 23 372-394 33-58 (66)
89 PRK03837 transcriptional regul 25.6 90 0.002 28.9 3.9 33 60-92 14-47 (241)
90 KOG0272 U4/U6 small nuclear ri 25.5 1.2E+02 0.0026 32.9 5.1 60 283-342 133-197 (459)
91 smart00312 PX PhoX homologous 25.5 1.6E+02 0.0035 23.6 4.9 87 26-122 10-99 (105)
92 PF15513 DUF4651: Domain of un 25.4 51 0.0011 26.8 1.9 16 61-76 4-19 (62)
93 PRK09464 pdhR transcriptional 24.7 98 0.0021 29.2 4.0 32 60-91 11-43 (254)
94 PRK00446 cyaY frataxin-like pr 24.3 1.8E+02 0.0038 25.4 5.1 27 366-396 57-83 (105)
95 PRK10785 maltodextrin glucosid 24.2 2.6E+02 0.0057 30.6 7.6 61 321-389 21-87 (598)
96 TIGR02154 PhoB phosphate regul 24.1 9 0.00019 33.2 -2.8 22 86-107 204-225 (226)
97 PF00730 HhH-GPD: HhH-GPD supe 24.0 78 0.0017 25.9 2.8 35 67-106 17-51 (108)
98 PRK10421 DNA-binding transcrip 23.8 99 0.0021 29.3 3.8 30 62-91 5-35 (253)
99 PF11797 DUF3324: Protein of u 23.6 2.9E+02 0.0063 24.6 6.5 25 374-398 102-129 (140)
100 cd06878 PX_SNX25 The phosphoin 22.6 2.2E+02 0.0049 25.1 5.6 89 26-120 24-117 (127)
101 PF06252 DUF1018: Protein of u 22.4 53 0.0011 28.3 1.6 34 69-106 7-40 (119)
102 cd06868 PX_HS1BP3 The phosphoi 21.5 2.8E+02 0.006 24.4 5.9 91 26-122 18-112 (120)
103 COG2188 PhnF Transcriptional r 21.1 1.2E+02 0.0027 28.8 3.9 30 62-91 10-40 (236)
104 PF04985 Phage_tube: Phage tai 20.6 3.2E+02 0.0069 24.7 6.3 52 332-400 98-151 (167)
105 smart00230 CysPc Calpain-like 20.5 1E+02 0.0022 30.9 3.3 26 375-400 98-126 (318)
106 PF07664 FeoB_C: Ferrous iron 20.4 67 0.0015 24.4 1.6 15 75-89 34-48 (54)
No 1
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.90 E-value=7.5e-24 Score=169.44 Aligned_cols=78 Identities=35% Similarity=0.699 Sum_probs=71.6
Q ss_pred ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeeecCCCCCcc
Q 015154 320 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 399 (412)
Q Consensus 320 L~~VTFtW~g~AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~~DPd~PtV 399 (412)
.++|+|+|.++|++|+|+|+|+||++.++|.+. ..+ |++++.||||.|+|||+|||+|.+||+.|++
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~ 67 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE 67 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc
Confidence 368999999999999999999999988999985 334 9999999999999999999999999999999
Q ss_pred cC-CCccceEEE
Q 015154 400 TK-GGICNNILR 410 (412)
Q Consensus 400 tD-~G~vNNVL~ 410 (412)
.+ .|+.||+|.
T Consensus 68 ~d~~G~~NN~i~ 79 (79)
T cd02859 68 TDDEGNVNNVID 79 (79)
T ss_pred CCCCCcEeeeEC
Confidence 87 699999984
No 2
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.76 E-value=1.7e-18 Score=138.10 Aligned_cols=77 Identities=39% Similarity=0.689 Sum_probs=68.1
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeee-cCCCCCc
Q 015154 321 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRES 398 (412)
Q Consensus 321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~-~DPd~Pt 398 (412)
++|+|+|.++ ++.|+|+|+||+|+ .++|.++ .+|.|++++.|+||.|+|||+|||.|. +||.++.
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~------------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~ 68 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE------------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAA 68 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC------------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCc
Confidence 4799999998 69999999999998 5789874 569999999999999999999999999 9999997
Q ss_pred ccC--CCccceEEE
Q 015154 399 VTK--GGICNNILR 410 (412)
Q Consensus 399 VtD--~G~vNNVL~ 410 (412)
..+ .|+.|+||.
T Consensus 69 ~~~~~~g~~n~v~~ 82 (82)
T cd02861 69 YVDDGFGGKNAVFV 82 (82)
T ss_pred eecCCCCccceEcC
Confidence 664 388899873
No 3
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.2e-15 Score=148.88 Aligned_cols=83 Identities=39% Similarity=0.567 Sum_probs=75.5
Q ss_pred ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeeecCCCCCcc
Q 015154 320 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 399 (412)
Q Consensus 320 L~~VTFtW~g~AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~~DPd~PtV 399 (412)
-.+|+|+|.++++.|+|+|+|++|...++|.+.. +..|.|++++.|++|.|+|||+|||+|++|++.|++
T Consensus 79 ~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~----------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta 148 (289)
T KOG1616|consen 79 GRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG----------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTA 148 (289)
T ss_pred CCceEEEecCCCceEEEecccccccccccceecC----------CCcccceeeEecCCceEEEEEecCCceecCCCCccc
Confidence 4689999999999999999999999999998742 345559999999999999999999999999999999
Q ss_pred cC-CCccceEEEeC
Q 015154 400 TK-GGICNNILRVI 412 (412)
Q Consensus 400 tD-~G~vNNVL~V~ 412 (412)
++ .|+.||+|.|.
T Consensus 149 ~d~~Gn~~N~i~v~ 162 (289)
T KOG1616|consen 149 EDSLGNLNNILEVQ 162 (289)
T ss_pred ccccCCcccceEec
Confidence 98 69999999984
No 4
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.23 E-value=4.5e-11 Score=96.74 Aligned_cols=77 Identities=25% Similarity=0.371 Sum_probs=64.6
Q ss_pred ceEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEECCeeecCCCCC
Q 015154 320 LEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQWKVDPQRE 397 (412)
Q Consensus 320 L~~VTFtW~g~-AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL-~LPPG~YEYKFIVDGeW~~DPd~P 397 (412)
...|+|+..++ |++|.|.|+|++|.. .+|+++ ++|.|++++ .|.+|.|.|+|+|||.|+.||..+
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~------------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~ 71 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD------------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNP 71 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecCCCcc-EeCeEC------------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCC
Confidence 35789987776 999999999998864 789885 689999998 488899999999999999999999
Q ss_pred cccC-CCccceEE
Q 015154 398 SVTK-GGICNNIL 409 (412)
Q Consensus 398 tVtD-~G~vNNVL 409 (412)
.... .+..-|++
T Consensus 72 ~~~~~~~~~~~~~ 84 (85)
T cd02858 72 TTKPGRQVDTSGV 84 (85)
T ss_pred ceeecccccceee
Confidence 9884 46555543
No 5
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.87 E-value=1e-08 Score=78.14 Aligned_cols=70 Identities=30% Similarity=0.478 Sum_probs=60.5
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCC-eeEEEEEEECCeeecCCCCCc
Q 015154 321 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRES 398 (412)
Q Consensus 321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPP-G~YEYKFIVDGeW~~DPd~Pt 398 (412)
..|+|++.++ ++.|.|.+.|++|...++|.+. ..|.|.+.+.+.. |.|.|+|.|||.|.+++.++.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~------------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~ 71 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV------------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPK 71 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC------------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChh
Confidence 4689998876 8999999999997667889874 5699999999887 999999999999999998877
Q ss_pred ccCC
Q 015154 399 VTKG 402 (412)
Q Consensus 399 VtD~ 402 (412)
..+.
T Consensus 72 ~~~~ 75 (83)
T cd02688 72 ADEG 75 (83)
T ss_pred hhcC
Confidence 6654
No 6
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.39 E-value=1.1e-06 Score=73.93 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=51.8
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEe--------CCe-eEEEEEEE-CC
Q 015154 321 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL--------YPG-TYEIKFIV-DG 388 (412)
Q Consensus 321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~L--------PPG-~YEYKFIV-DG 388 (412)
..++|+..+| |+.|+|.|+||+|+.. ++|.+. +.|+|++++.. +.| .|.|.+.. ||
T Consensus 5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~------------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G 72 (99)
T cd02854 5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD------------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG 72 (99)
T ss_pred CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC------------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence 4688987666 9999999999999863 679874 68999999864 456 56666666 78
Q ss_pred ee--ecCCCCCccc
Q 015154 389 QW--KVDPQRESVT 400 (412)
Q Consensus 389 eW--~~DPd~PtVt 400 (412)
+| +.||-...+.
T Consensus 73 ~~~~~~DPyA~~~~ 86 (99)
T cd02854 73 EWIDRIPAWIKYVT 86 (99)
T ss_pred CEEEEcCcceeEEE
Confidence 76 4677766554
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.32 E-value=6.1e-07 Score=70.67 Aligned_cols=59 Identities=27% Similarity=0.435 Sum_probs=46.6
Q ss_pred eEEEEEEecC-CceEEEEeeeCC-Cccc-cccCCCCCCCccccccccCCCcEEEEEE--eCCeeEEEEEEECCee
Q 015154 321 EVVEIQYSGD-GEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQW 390 (412)
Q Consensus 321 ~~VTFtW~g~-AkeV~LaGSFNN-W~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~--LPPG~YEYKFIVDGeW 390 (412)
..++|+..++ |+.|.|.+.|++ |... ++|.+. ...|+|++++. +++|.+.|+|.|||..
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-----------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-----------DDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-----------CTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-----------CCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 5789986665 999999999999 8653 789831 37899999998 8889888888887653
No 8
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.79 E-value=8.8e-05 Score=61.05 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=52.7
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCe-----
Q 015154 322 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ----- 389 (412)
Q Consensus 322 ~VTFtW~g~-AkeV~LaGSFNNW~-----~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDGe----- 389 (412)
.++|+..++ |++|.|.. |++|. ..++|.+. ..|+|++.+. +.+|.+ |+|.|+|.
T Consensus 9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~ 74 (100)
T cd02860 9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRG------------ENGVWSVTLDGDLEGYY-YLYEVKVYKGETN 74 (100)
T ss_pred CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecC------------CCCEEEEEeCCccCCcE-EEEEEEEeceEEE
Confidence 478976666 99999988 88886 34678763 6899999986 566754 88888875
Q ss_pred eecCCCCCcccCCC
Q 015154 390 WKVDPQRESVTKGG 403 (412)
Q Consensus 390 W~~DPd~PtVtD~G 403 (412)
...||-...+..+|
T Consensus 75 ~~~DPyA~~~~~~~ 88 (100)
T cd02860 75 EVVDPYAKALSANG 88 (100)
T ss_pred EEcCcccEeEeeCC
Confidence 78899888777544
No 9
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.73 E-value=0.00017 Score=58.30 Aligned_cols=66 Identities=26% Similarity=0.536 Sum_probs=48.4
Q ss_pred EEEEEEec---CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC-
Q 015154 322 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG- 388 (412)
Q Consensus 322 ~VTFtW~g---~AkeV~LaGS---FNNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---DG- 388 (412)
+|+|.... .|+.|+|+|+ +.+|++. ++|... ..+.|++.+.||+| .++|||++ +|
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~------------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~ 69 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA------------TYPVWSGTVDLPAGTAIEYKYIKKDGSGT 69 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC------------CCCCEEEEEEeCCCCeEEEEEEEECCCCc
Confidence 46666543 4899999996 6899863 578753 56789999999987 79999996 24
Q ss_pred -eeecCCCCCcc
Q 015154 389 -QWKVDPQRESV 399 (412)
Q Consensus 389 -eW~~DPd~PtV 399 (412)
.|...++.-..
T Consensus 70 ~~WE~~~nr~~~ 81 (95)
T cd05808 70 VTWESGPNRTAT 81 (95)
T ss_pred EEEecCCCEEEE
Confidence 47776644333
No 10
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.49 E-value=0.00064 Score=55.20 Aligned_cols=77 Identities=26% Similarity=0.352 Sum_probs=50.2
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEEC-Cee--ecCC
Q 015154 322 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVDP 394 (412)
Q Consensus 322 ~VTFtW~g~-AkeV~LaGSFNNW~~-~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG-~YEYKFIVD-GeW--~~DP 394 (412)
.++|+...+ |+.|.|.++|++|.. .++|.++ ...|.|.+.+. +++| .|.|++..+ |.| ..||
T Consensus 22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-----------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DP 90 (106)
T cd02855 22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-----------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADP 90 (106)
T ss_pred CEEEEEECCCCCEEEEEEECCCCCCcceecEEC-----------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCC
Confidence 478876555 999999999999964 3578764 24899998885 6666 444444444 333 4466
Q ss_pred CCCcccCCCccceEE
Q 015154 395 QRESVTKGGICNNIL 409 (412)
Q Consensus 395 d~PtVtD~G~vNNVL 409 (412)
-..-++.....++|+
T Consensus 91 Ya~~~~~~~~~~~~~ 105 (106)
T cd02855 91 YAFYSELRPGTASIV 105 (106)
T ss_pred CceeeEeCCCCeEEe
Confidence 665555444455543
No 11
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.43 E-value=0.0004 Score=56.91 Aligned_cols=58 Identities=22% Similarity=0.427 Sum_probs=45.2
Q ss_pred eEEEEEEec---CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 015154 321 EVVEIQYSG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 386 (412)
Q Consensus 321 ~~VTFtW~g---~AkeV~LaGSFN---NW~~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV 386 (412)
+.|+|.... .++.|+|+|+.. +|+. .++|.... .......|++++.||.| .++|||+|
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNE--------GTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBES--------SSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhcccccccc--------CCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 467887744 489999999996 8996 46787531 01246799999999998 79999999
No 12
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.0003 Score=76.26 Aligned_cols=67 Identities=25% Similarity=0.459 Sum_probs=51.6
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCe-----e
Q 015154 319 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----W 390 (412)
Q Consensus 319 gL~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDGe-----W 390 (412)
|...|+|+..+| ++.|.|.|+||+|... .+|... ++.|.|.++++ +++| +.|||.|++. +
T Consensus 34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-----------~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~ 101 (628)
T COG0296 34 GVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-----------KESGIWELFVPGAPPG-TRYKYELIDPSGQLRL 101 (628)
T ss_pred CCCceEEEEECCCCCeEEEEeecCCccceecccccC-----------CCCceEEEeccCCCCC-CeEEEEEeCCCCceee
Confidence 556899986665 9999999999999862 344432 36799999998 9999 9999999754 3
Q ss_pred ecCCCCC
Q 015154 391 KVDPQRE 397 (412)
Q Consensus 391 ~~DPd~P 397 (412)
+.||-.-
T Consensus 102 ~~DP~a~ 108 (628)
T COG0296 102 KADPYAR 108 (628)
T ss_pred ccCchhh
Confidence 6666543
No 13
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.25 E-value=0.0016 Score=53.72 Aligned_cols=67 Identities=27% Similarity=0.447 Sum_probs=49.9
Q ss_pred eEEEEEEec---CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC--
Q 015154 321 EVVEIQYSG---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG-- 388 (412)
Q Consensus 321 ~~VTFtW~g---~AkeV~LaGSF---NNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---DG-- 388 (412)
..|+|+... .|+.|+|+|+- .+|++..+|.. ..+.|.+.+.+|+| .++|||++ ||
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~-------------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v 68 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW-------------TENGWVCDLELDGGELVEYKFVIVKRDGSV 68 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc-------------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCE
Confidence 356666544 38999999988 59997777764 24569999999988 79999999 44
Q ss_pred eeecCCCCCccc
Q 015154 389 QWKVDPQRESVT 400 (412)
Q Consensus 389 eW~~DPd~PtVt 400 (412)
.|...++.-...
T Consensus 69 ~WE~g~Nr~~~~ 80 (92)
T cd05818 69 IWEGGNNRVLEL 80 (92)
T ss_pred EEEeCCCEEEEc
Confidence 487766654433
No 14
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.16 E-value=0.0013 Score=70.50 Aligned_cols=67 Identities=22% Similarity=0.334 Sum_probs=49.5
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEE-CCee--ecC
Q 015154 321 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KVD 393 (412)
Q Consensus 321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG-~YEYKFIV-DGeW--~~D 393 (412)
..|+|+..+| |+.|+|.|+||+|... .+|.+. ..|+|++++. +.+| .|.|++.+ ||.| ..|
T Consensus 38 ~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~------------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 105 (633)
T PRK12313 38 KGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR------------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKID 105 (633)
T ss_pred ccEEEEEECCCCCEEEEEEecCCCCccccccccc------------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCC
Confidence 4789987776 9999999999999864 678873 6799999997 4555 67666654 5765 456
Q ss_pred CCCCcc
Q 015154 394 PQRESV 399 (412)
Q Consensus 394 Pd~PtV 399 (412)
|-...+
T Consensus 106 Pya~~~ 111 (633)
T PRK12313 106 PFAFYF 111 (633)
T ss_pred CceEEE
Confidence 655443
No 15
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.14 E-value=0.0034 Score=52.74 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=52.0
Q ss_pred ceEEEEEEec-----CCceEEEEeeeC---CCcccc-----ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEE
Q 015154 320 LEVVEIQYSG-----DGEIVEVAGSFN---GWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFI 385 (412)
Q Consensus 320 L~~VTFtW~g-----~AkeV~LaGSFN---NW~~~I-----pM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFI 385 (412)
.++|+|.... .|+.|+|+|+-. +|+... +|.. .....|.+.+.||.| ..+|||+
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~------------~~~~~W~~~~~lp~~~~veyK~v 69 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC------------PNWPDWFVVASVPAGTYIEFKFL 69 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc------------CCCCCEEEEEEcCCCCcEEEEEE
Confidence 3688998863 389999999874 998632 5543 245689999999999 7999999
Q ss_pred E---CCe--eecCCCCCcccC
Q 015154 386 V---DGQ--WKVDPQRESVTK 401 (412)
Q Consensus 386 V---DGe--W~~DPd~PtVtD 401 (412)
+ ||. |...++.-....
T Consensus 70 ~~~~~g~v~WE~g~Nr~~~~p 90 (103)
T cd05820 70 KAPADGTGTWEGGSNHAYTTP 90 (103)
T ss_pred EECCCCCEEEEeCCCEeEECC
Confidence 9 553 877777655444
No 16
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.12 E-value=0.003 Score=52.56 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=49.6
Q ss_pred ceEEEEEEec----CCceEEEEe---eeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---C
Q 015154 320 LEVVEIQYSG----DGEIVEVAG---SFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 387 (412)
Q Consensus 320 L~~VTFtW~g----~AkeV~LaG---SFNNW~~~I-pM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---D 387 (412)
.++|+|.... .|+.|+|+| .+.+|+... +|..-. ....+.|++.+.||+| .++|||++ |
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~---------~~~~~~W~~~~~lp~~~~veyKyv~~~~~ 72 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYY---------NSHSNDWRGTVHLPAGRNIEFKAIKKSKD 72 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhcccc---------CCCCCCEEEEEEecCCCcEEEEEEEEcCC
Confidence 4688898743 389999999 567998631 232210 0245789999999999 79999999 4
Q ss_pred C---eeecCCCCCccc
Q 015154 388 G---QWKVDPQRESVT 400 (412)
Q Consensus 388 G---eW~~DPd~PtVt 400 (412)
| .|...++.-...
T Consensus 73 ~~~~~WE~g~nr~~~~ 88 (99)
T cd05809 73 GTNKSWQGGQQSWYPV 88 (99)
T ss_pred CCeeEEecCCCeeEEC
Confidence 4 287666654333
No 17
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.10 E-value=0.0017 Score=71.62 Aligned_cols=69 Identities=26% Similarity=0.431 Sum_probs=51.9
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE---CCeee-
Q 015154 319 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQWK- 391 (412)
Q Consensus 319 gL~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIV---DGeW~- 391 (412)
|..-|+|+..++ |+.|.|+|+||+|... .+|.+. ..|+|++.+. +.+| ..|||.| ||.+.
T Consensus 136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~------------~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~ 202 (730)
T PRK12568 136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR------------IGGFWELFLPRVEAG-ARYKYAITAADGRVLL 202 (730)
T ss_pred CCCcEEEEEECCCCCEEEEEEecCCCCccceecccC------------CCCEEEEEECCCCCC-CEEEEEEEcCCCeEee
Confidence 345689987666 9999999999999864 678763 6899999984 7777 3577777 78764
Q ss_pred -cCCCCCccc
Q 015154 392 -VDPQRESVT 400 (412)
Q Consensus 392 -~DPd~PtVt 400 (412)
.||-...+.
T Consensus 203 k~DPYA~~~e 212 (730)
T PRK12568 203 KADPVARQTE 212 (730)
T ss_pred cCCCcceEee
Confidence 677655443
No 18
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.02 E-value=0.0026 Score=52.89 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=41.4
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEECC
Q 015154 322 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDG 388 (412)
Q Consensus 322 ~VTFtW~g~-AkeV~LaGSFNNW~--~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL-~LPPG~YEYKFIVDG 388 (412)
.++|+..++ |+.|.|.. |++|. ..++|+++ ..|+|.+.+ .+.+|. .|+|.|||
T Consensus 10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~GvW~~~v~~~~~g~-~Y~y~i~g 66 (103)
T cd02856 10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE------------YGGVWHGFLPGIKAGQ-RYGFRVHG 66 (103)
T ss_pred CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc------------cCCEEEEEECCCCCCC-EEEEEECC
Confidence 478876666 99999998 66664 34688764 579999998 466775 79999999
No 19
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.98 E-value=0.0068 Score=50.38 Aligned_cols=74 Identities=28% Similarity=0.561 Sum_probs=50.8
Q ss_pred ceEEEEEEec---CCceEEEEeee---CCCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---C
Q 015154 320 LEVVEIQYSG---DGEIVEVAGSF---NGWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 387 (412)
Q Consensus 320 L~~VTFtW~g---~AkeV~LaGSF---NNW~~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---D 387 (412)
.+.|+|.... .|+.|+|+|+- .+|+. .++|.... .+...+.|.+.+.||+| .++|||+| |
T Consensus 6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~--------~t~~~~~W~~~v~lp~~~~veYKy~~~~~~ 77 (106)
T cd05811 6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQ--------YTSSNPLWSVTIPLPAGTSFEYKFIRKESD 77 (106)
T ss_pred EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCccccccc--------CccCCCcEEEEEEeCCCCcEEEEEEEEcCC
Confidence 3567787654 38999999987 48986 35675420 01235789999999988 69999996 2
Q ss_pred C--eeecCCCCCcccC
Q 015154 388 G--QWKVDPQRESVTK 401 (412)
Q Consensus 388 G--eW~~DPd~PtVtD 401 (412)
| .|...++.-....
T Consensus 78 ~~~~WE~~~nr~~~~~ 93 (106)
T cd05811 78 GSVTWESDPNRSYTVP 93 (106)
T ss_pred CcEEEecCCCeEEECC
Confidence 3 3877765444333
No 20
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.98 E-value=0.0028 Score=54.44 Aligned_cols=55 Identities=24% Similarity=0.558 Sum_probs=42.9
Q ss_pred EEEEEEec----CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 015154 322 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 386 (412)
Q Consensus 322 ~VTFtW~g----~AkeV~LaGS---FNNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV 386 (412)
.|+|.... .++.|+|+|+ +.+|+.. ++|.... ...+.|++.+.||++ .++|||++
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~----------~~~~~W~~~v~lp~~~~veYkY~~ 66 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED----------DDCNLWKASIELPRGVDFQYRYFV 66 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC----------CcCCccEEEEEECCCCeEEEEEEE
Confidence 35666544 3899999999 8999853 5787530 145789999999998 89999999
No 21
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.83 E-value=0.0033 Score=68.28 Aligned_cols=67 Identities=31% Similarity=0.451 Sum_probs=49.8
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECC---ee--ec
Q 015154 321 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---QW--KV 392 (412)
Q Consensus 321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDG---eW--~~ 392 (412)
..|+|+..++ |+.|.|.|+||+|... .+|.+. ..|+|++.+. +.+| ..|||.|+| .+ +.
T Consensus 38 ~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~------------~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~ 104 (639)
T PRK14706 38 EGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL------------DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKM 104 (639)
T ss_pred ccEEEEEECCCCCEEEEEEecCCccccccccccc------------CCCEEEEEECCCCCC-CEEEEEEECCCCCEEecc
Confidence 3588986666 9999999999999864 688874 5699999986 4555 468888864 43 56
Q ss_pred CCCCCccc
Q 015154 393 DPQRESVT 400 (412)
Q Consensus 393 DPd~PtVt 400 (412)
||-...+.
T Consensus 105 DPYa~~~~ 112 (639)
T PRK14706 105 DPYGSFFE 112 (639)
T ss_pred CcceEEEe
Confidence 77665444
No 22
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.81 E-value=0.0041 Score=52.69 Aligned_cols=59 Identities=25% Similarity=0.427 Sum_probs=43.2
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc---c--ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCeee
Q 015154 322 VVEIQYSGD-GEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQWK 391 (412)
Q Consensus 322 ~VTFtW~g~-AkeV~LaGSFNNW~---~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDGeW~ 391 (412)
.++|+..++ |+.|.|.. |++|. + .++|.++. .+..|+|.+.+. +.+|. .|+|.|+|.|.
T Consensus 8 g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~---------~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~ 73 (119)
T cd02852 8 GVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSV---------NRTGDVWHVFVEGLKPGQ-LYGYRVDGPFE 73 (119)
T ss_pred CEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcc---------cccCCEEEEEECCCCCCC-EEEEEECCCCC
Confidence 478976665 99999998 88886 2 35676531 124699999884 77886 69999998543
No 23
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.81 E-value=0.0041 Score=72.02 Aligned_cols=66 Identities=33% Similarity=0.602 Sum_probs=49.1
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC---Cee--
Q 015154 319 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQW-- 390 (412)
Q Consensus 319 gL~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVD---GeW-- 390 (412)
+...|.|+..+| |+.|.|.|+||+|... .+|.+. ...|+|++.++ +.+|. .|||.|+ |.|
T Consensus 636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-----------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~ 703 (1224)
T PRK14705 636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-----------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVE 703 (1224)
T ss_pred CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC-----------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEe
Confidence 345688976665 9999999999999864 568763 35799999885 78885 5888884 555
Q ss_pred ecCCCC
Q 015154 391 KVDPQR 396 (412)
Q Consensus 391 ~~DPd~ 396 (412)
+.||-.
T Consensus 704 k~DPyA 709 (1224)
T PRK14705 704 KADPLA 709 (1224)
T ss_pred cCCccc
Confidence 456654
No 24
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.75 E-value=0.0081 Score=48.31 Aligned_cols=73 Identities=14% Similarity=0.043 Sum_probs=50.7
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEC-CeeecCCCCCc
Q 015154 321 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD-GQWKVDPQRES 398 (412)
Q Consensus 321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVD-GeW~~DPd~Pt 398 (412)
..++|+..++ |++|.|.... |. .++|.++ ..|.|++++..-+|. .|+|.|+ |..+.||....
T Consensus 8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~------------~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD------------GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred CCEEEEEeCCCCCEEEEEecC--CC-cccCccC------------CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence 3588987666 9999999643 53 4789874 689999988533775 4777776 56888999887
Q ss_pred ccCCCccceEE
Q 015154 399 VTKGGICNNIL 409 (412)
Q Consensus 399 VtD~G~vNNVL 409 (412)
...+.+-+++|
T Consensus 72 ~~~~~~~~s~v 82 (85)
T cd02853 72 QPEGVHGPSQV 82 (85)
T ss_pred CCCCCCCCeEe
Confidence 55432223443
No 25
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.73 E-value=0.0074 Score=67.02 Aligned_cols=104 Identities=17% Similarity=0.200 Sum_probs=65.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchHHHHHHHhhCCCceEEEEEEecC-CceEEEEee
Q 015154 261 KFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGD-GEIVEVAGS 339 (412)
Q Consensus 261 ~~m~~qkele~~~~k~q~e~~K~aLa~l~~k~~~~i~~Aq~ll~eK~~~LdaAe~aLsgL~~VTFtW~g~-AkeV~LaGS 339 (412)
+.-+.++...+.+.+++|++..-.|.- --.+|+..=|+..- ..++|+..+| |+.|+|+|+
T Consensus 73 ~~~~~~r~~~~~~~~~~i~~~~~~l~~--f~~~y~~lGa~~~~-----------------~g~~FrvWAP~A~~V~LvGd 133 (758)
T PLN02447 73 EDHLRYRYSRYRRRREEIEKNEGGLEA--FSRGYEKFGFNRSE-----------------GGITYREWAPGAKAAALIGD 133 (758)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHH--HHHHHHhceeEEec-----------------CCEEEEEECCCCCEEEEEEe
Confidence 334445555666677777754443322 22234444444320 2578876565 999999999
Q ss_pred eCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-------eCCeeEEEEEEEC---Ce--eecCCCC
Q 015154 340 FNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ--WKVDPQR 396 (412)
Q Consensus 340 FNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-------LPPG~YEYKFIVD---Ge--W~~DPd~ 396 (412)
||+|+.. .+|++. ..|+|++.++ ++.|. .|||.|. |. .+.||-.
T Consensus 134 FN~W~~~~~~M~~~------------~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~~~~r~dpya 190 (758)
T PLN02447 134 FNNWNPNAHWMTKN------------EFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGRWVDRIPAWI 190 (758)
T ss_pred cCCCCCCccCceeC------------CCCEEEEEECCccccccCCCCC-EEEEEEEeCCCcEEeecCchH
Confidence 9999864 579874 6899999986 34453 6777774 54 4556644
No 26
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.70 E-value=0.014 Score=47.02 Aligned_cols=46 Identities=26% Similarity=0.525 Sum_probs=37.3
Q ss_pred CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCC--e-eEEEEEEE
Q 015154 330 DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP--G-TYEIKFIV 386 (412)
Q Consensus 330 ~AkeV~LaGSFN---NW~~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPP--G-~YEYKFIV 386 (412)
.|+.|+|+|+.. +|+. .++|... ...+.|.+.+.+|+ | .++|||++
T Consensus 12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~-----------~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 12 FGQSVYVVGSHPELGNWDPAKALRLNTS-----------NSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCEEEEEeCcHHhCCcChhcCccccCC-----------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 489999999984 8985 3678653 12678999999999 7 79999998
No 27
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.65 E-value=0.019 Score=47.68 Aligned_cols=66 Identities=26% Similarity=0.561 Sum_probs=47.7
Q ss_pred EEEEEec----CCceEEEEeee---CCCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE--C--
Q 015154 323 VEIQYSG----DGEIVEVAGSF---NGWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--D-- 387 (412)
Q Consensus 323 VTFtW~g----~AkeV~LaGSF---NNW~~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG--~YEYKFIV--D-- 387 (412)
|+|+... .++.|+|+|+- .+|+. .++|... ....|++.+.+|++ .++|||++ +
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~~p~~~~~ieYKyvi~~~~~ 69 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDV------------GFPIWEADIDISKDSFPFEYKYIIANKDS 69 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCC------------CCCcEEEEEEeCCCCccEEEEEEEEeCCC
Confidence 5666543 48999999996 58985 3578652 46789999999986 59999998 2
Q ss_pred C--eeecCCCCCccc
Q 015154 388 G--QWKVDPQRESVT 400 (412)
Q Consensus 388 G--eW~~DPd~PtVt 400 (412)
| .|..-++.-...
T Consensus 70 ~~~~WE~g~nr~~~~ 84 (99)
T cd05816 70 GVVSWENGPNRELSA 84 (99)
T ss_pred CcEEEEcCCCeEEEC
Confidence 3 277766655434
No 28
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.64 E-value=0.0071 Score=50.39 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=36.7
Q ss_pred CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 015154 330 DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 386 (412)
Q Consensus 330 ~AkeV~LaGSF---NNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV 386 (412)
.|+.|+|+|+- .+|+.. ++|... ....|++.+.||+| .++|||+|
T Consensus 12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~------------~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 12 FGEAVYISGNCNQLGNWNPSKAKRMQWN------------EGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCEEEEEeCcHHHCCCCccccCcccCC------------CCCCEEEEEEECCCCcEEEEEEE
Confidence 38999999995 689853 567642 45689999999988 69999999
No 29
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.61 E-value=0.015 Score=48.40 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=50.3
Q ss_pred ceEEEEEEe-c---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---
Q 015154 320 LEVVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--- 386 (412)
Q Consensus 320 L~~VTFtW~-g---~AkeV~LaGSFN---NW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV--- 386 (412)
.++|+|... . .|+.|+|+|+-. +|+.. +.|... ........|.+.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~--------~~~~~~~~W~~~~~lp~~~~~eyK~~~~~~ 73 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFN--------QVVYQYPNWYYDVSVPAGTTIEFKFIKKNG 73 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccc--------cCCCcCCcEEEEEEcCCCCcEEEEEEEECC
Confidence 467888874 2 389999999874 99864 222110 001245689999999999 79999999
Q ss_pred CCe--eecCCCCCcccC
Q 015154 387 DGQ--WKVDPQRESVTK 401 (412)
Q Consensus 387 DGe--W~~DPd~PtVtD 401 (412)
||. |...++.-....
T Consensus 74 ~~~~~WE~g~nr~~~~p 90 (101)
T cd05807 74 DNTVTWESGSNHTYTAP 90 (101)
T ss_pred CCCEEEEeCCCEEEeCC
Confidence 453 877666544433
No 30
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.61 E-value=0.0085 Score=49.11 Aligned_cols=53 Identities=28% Similarity=0.511 Sum_probs=41.3
Q ss_pred EEEEEEec----CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 015154 322 VVEIQYSG----DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 386 (412)
Q Consensus 322 ~VTFtW~g----~AkeV~LaGSF---NNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV 386 (412)
+|+|+... +++.|+|+|+- .+|+...+|... ..+.|.+.+.||+| .++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~------------~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV------------KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC------------CCCCEEEEEEecCCCcEEEEEEE
Confidence 56676543 35778899987 489887788652 45789999999998 59999998
No 31
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.57 E-value=0.0057 Score=64.92 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=52.6
Q ss_pred EEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECC-eeecCCCCCcc
Q 015154 323 VEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESV 399 (412)
Q Consensus 323 VTFtW~g~-AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDG-eW~~DPd~PtV 399 (412)
|+|+..++ |++|.|.+ ++ ..++|.+. ..|+|++++. +.+| +.|+|.||| .-+.||.....
T Consensus 1 v~FrlwAP~A~~V~L~l---~~-~~~~m~k~------------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRL---NG-ALHAMQRL------------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEe---CC-CEEeCeEC------------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence 57876666 99999997 23 35789874 6799999996 7788 789999999 68889998876
Q ss_pred cCCCccceEE
Q 015154 400 TKGGICNNIL 409 (412)
Q Consensus 400 tD~G~vNNVL 409 (412)
..+.+..++|
T Consensus 64 ~~~~~~~S~V 73 (542)
T TIGR02402 64 PDGVHGPSQV 73 (542)
T ss_pred ccCCCCCeEE
Confidence 5432223444
No 32
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.57 E-value=0.0076 Score=65.97 Aligned_cols=67 Identities=28% Similarity=0.466 Sum_probs=48.7
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEEC-Cee--ecC
Q 015154 321 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVD 393 (412)
Q Consensus 321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG-~YEYKFIVD-GeW--~~D 393 (412)
..|+|+..++ |++|.|.|+||+|... .+|.+. ...|.|++.+. +++| .|.|++..+ |.| ..|
T Consensus 131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 199 (726)
T PRK05402 131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-----------GESGVWELFIPGLGEGELYKFEILTADGELLLKAD 199 (726)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc-----------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCC
Confidence 3589987776 9999999999999753 578764 26799999885 6777 677777664 454 445
Q ss_pred CCCCc
Q 015154 394 PQRES 398 (412)
Q Consensus 394 Pd~Pt 398 (412)
|-.-.
T Consensus 200 PYa~~ 204 (726)
T PRK05402 200 PYAFA 204 (726)
T ss_pred CceEE
Confidence 54443
No 33
>PLN02316 synthase/transferase
Probab=96.43 E-value=0.034 Score=63.76 Aligned_cols=63 Identities=13% Similarity=0.343 Sum_probs=45.3
Q ss_pred CceEEEEEEec------CCceEEEEeeeCCCccccc--cCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-CC
Q 015154 319 GLEVVEIQYSG------DGEIVEVAGSFNGWHHRIK--MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG 388 (412)
Q Consensus 319 gL~~VTFtW~g------~AkeV~LaGSFNNW~~~Ip--M~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIV-DG 388 (412)
.-.+|++.|+. +..+|+|.|.||+|.+... +.. .+...+.++.|.+++.+|+.-|-.-|+. ||
T Consensus 327 aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~-------~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg 398 (1036)
T PLN02316 327 AGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKL-------VKSEEKDGDWWYAEVVVPERALVLDWVFADG 398 (1036)
T ss_pred CCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCccccee-------ecccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence 33689999973 3689999999999987421 111 0111234557889999999999999997 66
No 34
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=95.97 E-value=0.04 Score=46.07 Aligned_cols=67 Identities=27% Similarity=0.446 Sum_probs=47.6
Q ss_pred EEEEEEe-c---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC
Q 015154 322 VVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 388 (412)
Q Consensus 322 ~VTFtW~-g---~AkeV~LaGSFN---NW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---DG 388 (412)
+|+|... + .++.|+|+|+-. +|+.. ++|... ....|.+.+.||.| ..+|||++ +|
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~lp~~~~veyKyv~~~~~~ 69 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT------------AYPTWSGSISLPASTNVEWKCLKRNETN 69 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC------------CCCeEEEEEEcCCCCeEEEEEEEEcCCC
Confidence 4666632 2 489999999885 99853 556542 45689999999999 79999998 22
Q ss_pred -----eeecCCCCCccc
Q 015154 389 -----QWKVDPQRESVT 400 (412)
Q Consensus 389 -----eW~~DPd~PtVt 400 (412)
.|...++.-+.+
T Consensus 70 ~~~~v~WE~g~Nr~~~~ 86 (97)
T cd05810 70 PTAGVQWQGGGNNQLTT 86 (97)
T ss_pred CcceEEEeeCCCEEEeC
Confidence 477766654433
No 35
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.95 E-value=0.022 Score=61.22 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=49.8
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC---Ce--eec
Q 015154 321 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKV 392 (412)
Q Consensus 321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVD---Ge--W~~ 392 (412)
..++|+..+| |+.|.|.|+||+|... .+|.+. ...|+|++.+. +.+|. .|+|.|+ |. ++.
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~ 95 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-----------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKA 95 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCCceecceEe-----------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeC
Confidence 3678986666 9999999999999754 478763 24799999885 45665 5888884 54 467
Q ss_pred CCCCCccc
Q 015154 393 DPQRESVT 400 (412)
Q Consensus 393 DPd~PtVt 400 (412)
||-.-.+.
T Consensus 96 DPYA~~~~ 103 (613)
T TIGR01515 96 DPYAFYAE 103 (613)
T ss_pred CCCEeeec
Confidence 88765444
No 36
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.74 E-value=0.02 Score=62.80 Aligned_cols=63 Identities=21% Similarity=0.077 Sum_probs=45.3
Q ss_pred EEEEEEec-CCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE--CCe--eecCCCC
Q 015154 322 VVEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ--WKVDPQR 396 (412)
Q Consensus 322 ~VTFtW~g-~AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIV--DGe--W~~DPd~ 396 (412)
-++|+..+ .|++|.|.|+||+ ....+|.+. ...|+|++.+++..|.. |||.| ||+ .+.||-.
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-----------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-----------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEc-----------CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence 56786555 5999999999996 344688863 36799999999777733 55555 886 5557665
Q ss_pred C
Q 015154 397 E 397 (412)
Q Consensus 397 P 397 (412)
-
T Consensus 96 f 96 (726)
T PRK05402 96 F 96 (726)
T ss_pred c
Confidence 3
No 37
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.03 E-value=0.083 Score=43.75 Aligned_cols=65 Identities=20% Similarity=0.453 Sum_probs=43.8
Q ss_pred EEEE--EecC-CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CCe-
Q 015154 323 VEIQ--YSGD-GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DGQ- 389 (412)
Q Consensus 323 VTFt--W~g~-AkeV~LaGSF---NNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---DGe- 389 (412)
|+|. +... |+.|+|+|+- .+|+.. ++|... .......|++.+.+|++ .++|||+| ||.
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~---------~~~~~~~W~~~v~~~~~~~veYky~v~~~~~~~ 72 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPS---------HQGDVLVWSGSISVPPGFSSEYNYYVVDDRKSV 72 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeec---------CCCCCCEEEEEEEeCCCCcEEEEEEEEcCCCcE
Confidence 4454 4433 8999999987 589753 567531 01234589999999988 69999999 342
Q ss_pred --eecCCCC
Q 015154 390 --WKVDPQR 396 (412)
Q Consensus 390 --W~~DPd~ 396 (412)
|-..++.
T Consensus 73 ~~wE~g~nr 81 (101)
T cd05815 73 LRSESGEKR 81 (101)
T ss_pred EEeecCCCE
Confidence 6555543
No 38
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=94.17 E-value=0.14 Score=54.98 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=46.7
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEECCe--ee
Q 015154 322 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVDGQ--WK 391 (412)
Q Consensus 322 ~VTFtW~g~-AkeV~LaGSFNNW~~-----~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG-~YEYKFIVDGe--W~ 391 (412)
.|+|+..++ |+.|.|.+ |++|.. .++|.+. ..|+|++.+. +.+| .|.|++-.+|. +.
T Consensus 20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~------------~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~ 86 (605)
T TIGR02104 20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG------------ENGVWSAVLEGDLHGYFYTYQVCINGKWRET 86 (605)
T ss_pred eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC------------CCCEEEEEECCCCCCCEEEEEEEcCCCeEEE
Confidence 489986666 99999997 888853 4678763 5799999986 5666 44444444565 48
Q ss_pred cCCCCCccc
Q 015154 392 VDPQRESVT 400 (412)
Q Consensus 392 ~DPd~PtVt 400 (412)
.||-...+.
T Consensus 87 ~DPya~~~~ 95 (605)
T TIGR02104 87 VDPYAKAVT 95 (605)
T ss_pred cCCCcceec
Confidence 898776544
No 39
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=93.88 E-value=0.14 Score=42.37 Aligned_cols=63 Identities=24% Similarity=0.550 Sum_probs=38.4
Q ss_pred EEEEEEec------CCceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-CC--ee
Q 015154 322 VVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG--QW 390 (412)
Q Consensus 322 ~VTFtW~g------~AkeV~LaGSFNNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIV-DG--eW 390 (412)
+|+|.|.. ++..|.+.+.|++|+.. +.|.+.. .....+.|++++.+|..-|...|+. || .|
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~--------~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w 74 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMC--------VPDEGGWWKATVDVPEDAYVMDFVFNDGAGNW 74 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEES--------S---TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceee--------eeecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence 67888843 37889999999999874 4565421 0123789999999999999999988 65 56
Q ss_pred ec
Q 015154 391 KV 392 (412)
Q Consensus 391 ~~ 392 (412)
-.
T Consensus 75 DN 76 (87)
T PF03423_consen 75 DN 76 (87)
T ss_dssp ES
T ss_pred eC
Confidence 43
No 40
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=93.68 E-value=0.5 Score=41.37 Aligned_cols=55 Identities=22% Similarity=0.416 Sum_probs=37.8
Q ss_pred EecCCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe----eEEEEEEE
Q 015154 327 YSGDGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG----TYEIKFIV 386 (412)
Q Consensus 327 W~g~AkeV~LaGSF---NNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG----~YEYKFIV 386 (412)
+-.++++|+|+|+- .+|+.. ++|....- + ........|.+.+.||+| ..+|||+.
T Consensus 11 ~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~y----t-~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 11 FADRDTELLVLGSRPELGSWDPQRAVPMRPARK----A-LSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred ecCCCCEEEEEECchhcCCCCcccccccccccc----c-ccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 44568999999986 599854 45654200 0 000234579999999986 69999998
No 41
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=92.71 E-value=0.55 Score=48.54 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=56.5
Q ss_pred CCceEEEEEEecC-C-------ceEEEEeeeCCCcc------ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEE
Q 015154 318 SGLEVVEIQYSGD-G-------EIVEVAGSFNGWHH------RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEI 382 (412)
Q Consensus 318 sgL~~VTFtW~g~-A-------keV~LaGSFNNW~~------~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEY 382 (412)
.+.+.|||-|+++ + +.|+|.+ |+... +..|.+-+ ...+|..++.||.. +-.|
T Consensus 36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~~--n~~tdh~~~~~~~~l~rl~-----------~tDvW~~~~~~p~~~r~sY 102 (411)
T PRK10439 36 DGMVRVTFWWRDPQGDEEHSTIRRVWIYI--NGVTDHHQNSQPQSLQRIA-----------GTDVWQWSTELSANWRGSY 102 (411)
T ss_pred CCcEEEEEEeeCCCCCcccccceeEEEeC--CCCCCcCccCCcchhhccC-----------CCceEEEEEEECcccEEEE
Confidence 4568999999985 3 2588743 34432 33687753 67899999999999 8999
Q ss_pred EEEEC---C-------------------------eeecCCCCCcccCC--CccceEEEe
Q 015154 383 KFIVD---G-------------------------QWKVDPQRESVTKG--GICNNILRV 411 (412)
Q Consensus 383 KFIVD---G-------------------------eW~~DPd~PtVtD~--G~vNNVL~V 411 (412)
+|+++ . .-+.||.||....+ |...|+|.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l 161 (411)
T PRK10439 103 CFIPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM 161 (411)
T ss_pred EEEeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence 99993 1 11479999986542 444577654
No 42
>PLN02316 synthase/transferase
Probab=92.52 E-value=1.1 Score=51.87 Aligned_cols=56 Identities=27% Similarity=0.427 Sum_probs=43.5
Q ss_pred ceEEEEEEecC------CceEEEEeeeCCCcccc------ccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE
Q 015154 320 LEVVEIQYSGD------GEIVEVAGSFNGWHHRI------KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 386 (412)
Q Consensus 320 L~~VTFtW~g~------AkeV~LaGSFNNW~~~I------pM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIV 386 (412)
-.+|++.|+.. ..+|++.|+||.|.+.. .|.+. ...+.|.+++.+|..-|-.-|+-
T Consensus 490 G~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~-----------~~g~~~~a~v~vP~da~~mdfvF 557 (1036)
T PLN02316 490 GTTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPA-----------DNGSHLKATVKVPLDAYMMDFVF 557 (1036)
T ss_pred CCEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeec-----------CCCceEEEEEEccccceEEEEEE
Confidence 35899999752 58899999999999752 25443 23345689999999999999987
No 43
>PLN02950 4-alpha-glucanotransferase
Probab=92.32 E-value=0.76 Score=52.46 Aligned_cols=71 Identities=20% Similarity=0.373 Sum_probs=52.7
Q ss_pred CceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE-
Q 015154 319 GLEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV- 386 (412)
Q Consensus 319 gL~~VTFtW~g----~AkeV~LaGSF---NNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG--~YEYKFIV- 386 (412)
..++|+|+... .|+.|+|+|+- .+|+.. ++|.. .....|++.+.+|.+ ..+|||++
T Consensus 151 ~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~------------~~~p~W~~~v~lp~~~~~~EYKyv~~ 218 (909)
T PLN02950 151 DEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY------------TGDSIWEADCLVPKSDFPIKYKYALQ 218 (909)
T ss_pred CceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc------------CCCCcEEEEEEecCCCceEEEEEEEE
Confidence 34788888644 38999999987 499864 45654 246789999999988 59999998
Q ss_pred --CCe--eecCCCCCcccC
Q 015154 387 --DGQ--WKVDPQRESVTK 401 (412)
Q Consensus 387 --DGe--W~~DPd~PtVtD 401 (412)
+|. |...++.-...+
T Consensus 219 ~~~g~v~WE~g~NR~~~~p 237 (909)
T PLN02950 219 TAEGLVSLELGVNRELSLD 237 (909)
T ss_pred cCCCceEEeeCCCceeecC
Confidence 443 877777655544
No 44
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=90.17 E-value=0.72 Score=50.93 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=41.3
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCee
Q 015154 322 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 390 (412)
Q Consensus 322 ~VTFtW~g~-AkeV~LaGSFNNW~~----~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDGeW 390 (412)
.|+|+..++ |+.|.|. -|++|.. .++|.+. ..|+|.+.+. +.+|.| |+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~g~~-Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPER------------TDDIWHGYLPGAQPGQL-YGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccC------------CCCEEEEEECCCCCCCE-EEEEEeeee
Confidence 488986666 9999996 6666542 3578763 5799999995 778874 999999854
No 45
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=90.10 E-value=0.96 Score=39.71 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=53.0
Q ss_pred eEEEEEEe----cCCceEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEECCe-
Q 015154 321 EVVEIQYS----GDGEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ- 389 (412)
Q Consensus 321 ~~VTFtW~----g~AkeV~LaGSFNNW~~~-----IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIVDGe- 389 (412)
..|||-|. +....|.|-|..|++..+ ..|.+- .+..+|..++.||.+ +=.|.|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl-----------~gTDVW~~t~~lp~d~rgSY~~~p~~~~ 70 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL-----------PGTDVWYWTYRLPADWRGSYSFIPDVPD 70 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE------------TTSSEEEEEEEEETT-EEEEEEEEES-T
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC-----------CCCceEEEEEEECcccEEEEEEEecCcc
Confidence 47999999 346789999999999654 346654 356799999999998 89999997532
Q ss_pred ---------------eecCCCCCccc-C----CCccceEEE
Q 015154 390 ---------------WKVDPQRESVT-K----GGICNNILR 410 (412)
Q Consensus 390 ---------------W~~DPd~PtVt-D----~G~vNNVL~ 410 (412)
-+.||-||... . .|..-++++
T Consensus 71 ~~~~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~ 111 (122)
T PF11806_consen 71 ARGAQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE 111 (122)
T ss_dssp -HHHHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred cchhHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence 35699999754 2 267777765
No 46
>PLN02950 4-alpha-glucanotransferase
Probab=89.21 E-value=1.9 Score=49.35 Aligned_cols=67 Identities=18% Similarity=0.440 Sum_probs=46.7
Q ss_pred eEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC
Q 015154 321 EVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 388 (412)
Q Consensus 321 ~~VTFtW~g---~AkeV~LaGSF---NNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---DG 388 (412)
+.|+|..+. -|++|+|+|+- .+|+.. ++|... .......|++++.||.| ..+|||++ ||
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~---------~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g 79 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPV---------HQGDELVWEGSVSVPEGFSCEYSYYVVDDNK 79 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccc---------cCCCCCeEEEEEEecCCCeEEEEEEEEeCCC
Confidence 556666543 38999999998 489753 567542 01234589999999988 69999995 44
Q ss_pred e---eecCCCC
Q 015154 389 Q---WKVDPQR 396 (412)
Q Consensus 389 e---W~~DPd~ 396 (412)
. |...++.
T Consensus 80 ~vi~WE~g~NR 90 (909)
T PLN02950 80 NVLRWEAGKKR 90 (909)
T ss_pred ceeeeecCCCe
Confidence 3 7666644
No 47
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=87.15 E-value=1.5 Score=51.19 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=47.3
Q ss_pred EEEEEEecC-CceEEEEee-eCCCcc---ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-----eEEEEEEECC--
Q 015154 322 VVEIQYSGD-GEIVEVAGS-FNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-----TYEIKFIVDG-- 388 (412)
Q Consensus 322 ~VTFtW~g~-AkeV~LaGS-FNNW~~---~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG-----~YEYKFIVDG-- 388 (412)
.++|+..++ |+.|.|.+- +++|.. .++|.+. ..|+|++.+. +.+| -|.|+|.|+|
T Consensus 328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~------------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~ 395 (1111)
T TIGR02102 328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG------------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGG 395 (1111)
T ss_pred CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC------------CCCEEEEEECCcccCcccCCCceEEEEEECCC
Confidence 378986666 999999984 455653 4688873 6899999986 4443 3688888876
Q ss_pred --eeecCCCCCcc
Q 015154 389 --QWKVDPQRESV 399 (412)
Q Consensus 389 --eW~~DPd~PtV 399 (412)
....||-...+
T Consensus 396 ~~~~~~DPYA~al 408 (1111)
T TIGR02102 396 DKVLALDPYAKSL 408 (1111)
T ss_pred ceEEEeChhheEE
Confidence 35678765543
No 48
>PRK03705 glycogen debranching enzyme; Provisional
Probab=86.16 E-value=1.5 Score=48.38 Aligned_cols=55 Identities=25% Similarity=0.441 Sum_probs=40.9
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCee
Q 015154 322 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 390 (412)
Q Consensus 322 ~VTFtW~g~-AkeV~LaGSFNNW~--~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDGeW 390 (412)
.|.|+..++ |+.|.|.. |+++. ..++|.+ ...|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPA------------RSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeee------------ccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 488986665 99999997 77653 2467865 35789999985 66775 5999999854
No 49
>PLN02960 alpha-amylase
Probab=84.74 E-value=3.1 Score=47.71 Aligned_cols=59 Identities=19% Similarity=0.357 Sum_probs=41.8
Q ss_pred EEEEE-EecCCceEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCcEEEEE--EeCCee-------EEEEEEEC
Q 015154 322 VVEIQ-YSGDGEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPGT-------YEIKFIVD 387 (412)
Q Consensus 322 ~VTFt-W~g~AkeV~LaGSFNNW~~~I-pM~kd~ss~~~a~~~sk~~G~Fs~tL--~LPPG~-------YEYKFIVD 387 (412)
-|.|. |.-+|..+.|.|+||||.+.. .|.+- -.++.+-|.|.+++ .|.+|. -||.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRAREG-------YFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhcc-------cccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 56664 666699999999999999864 34310 13345789999998 488772 36777775
No 50
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=83.64 E-value=4 Score=46.89 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=47.5
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC------Ce-
Q 015154 321 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ- 389 (412)
Q Consensus 321 ~~VTFtW~g~-AkeV~LaGSFNNW~--~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVD------Ge- 389 (412)
..++|+..+| |+.|.|.+-+++|. ..++|.++ ...|+|++.+. ...|.| |+|.|+ |.
T Consensus 135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-----------~~~GVWsv~v~g~~~G~~-Y~Y~V~v~~p~~G~v 202 (898)
T TIGR02103 135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-----------STSGVWSAEGGSSWKGAY-YRYEVTVYHPSTGKV 202 (898)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-----------CCCCEEEEEECcCCCCCE-eEEEEEEecCCCCeE
Confidence 3688987666 99999997776664 23678764 25799999985 456643 777775 54
Q ss_pred ---eecCCCCCccc
Q 015154 390 ---WKVDPQRESVT 400 (412)
Q Consensus 390 ---W~~DPd~PtVt 400 (412)
...||-...+.
T Consensus 203 ~~~~v~DPYA~als 216 (898)
T TIGR02103 203 ETYLVTDPYSVSLS 216 (898)
T ss_pred CCeEEeCcCcceEc
Confidence 36788776554
No 51
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=80.92 E-value=8.4 Score=31.57 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=37.3
Q ss_pred eEEEEEEec---CCceEEEEeeeCC--Cc-cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE
Q 015154 321 EVVEIQYSG---DGEIVEVAGSFNG--WH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 386 (412)
Q Consensus 321 ~~VTFtW~g---~AkeV~LaGSFNN--W~-~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIV 386 (412)
.+|+|+... +...|.|.-.-+. |. ..++|.+..+ +.....|++++.++.|++.|.|.|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~--------~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGS--------DELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeee--------CCceeEEEEEEecCCcEEEEEEEE
Confidence 455555533 3678888765443 22 2478877521 112235999999888999999999
No 52
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=74.60 E-value=9 Score=45.33 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=42.2
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc----cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCee
Q 015154 321 EVVEIQYSGD-GEIVEVAGSFNGWHHR----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 390 (412)
Q Consensus 321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~----IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDGeW 390 (412)
..|+|+...+ |+.|.|. -|+.|... ++|.. +..++|.+.+. +.+|. .|+|.|+|.|
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~------------~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG------------RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC------------CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 3589976555 9999997 89988642 45643 35789998875 78887 6999999855
No 53
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=64.08 E-value=17 Score=32.72 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCChHHHhhhchhhHHHHHHhhhHHHHHH
Q 015154 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKFIRQ 110 (412)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~-~vps~kels~hgr~dlan~vrrrgyk~i~~ 110 (412)
..+++-|++=+.+=-|+|| +|||++||+.+=.+-.. -| .|+|+-..+
T Consensus 14 ~QI~~qIk~~I~~g~l~pGdkLPSvRelA~~~~VNpn-Tv-~raY~eLE~ 61 (125)
T COG1725 14 EQIANQIKEQIASGELKPGDKLPSVRELAKDLGVNPN-TV-QRAYQELER 61 (125)
T ss_pred HHHHHHHHHHHHhCCcCCCCCCCcHHHHHHHhCCCHH-HH-HHHHHHHHH
Confidence 3577888888888888777 69999999987666654 34 467875544
No 54
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=63.53 E-value=8 Score=29.47 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCChHHHhhhc
Q 015154 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHG 92 (412)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~-~vps~kels~hg 92 (412)
+.++..|++.|.+-.+|+| .+||..+|+++=
T Consensus 3 ~~i~~~l~~~I~~g~~~~g~~lps~~~la~~~ 34 (64)
T PF00392_consen 3 EQIYDQLRQAILSGRLPPGDRLPSERELAERY 34 (64)
T ss_dssp HHHHHHHHHHHHTTSS-TTSBE--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCEeCCHHHHHHHh
Confidence 4678999999999999998 789999999863
No 55
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=58.30 E-value=38 Score=29.04 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=40.5
Q ss_pred EEEEEEecC--CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe--------eEEEEEEECCe--
Q 015154 322 VVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--------TYEIKFIVDGQ-- 389 (412)
Q Consensus 322 ~VTFtW~g~--AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG--------~YEYKFIVDGe-- 389 (412)
..++....- .+.|.|.=+||+|.....+.-....+............|...+.|++. .+-.+|.|+|.
T Consensus 22 ~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~ey 101 (113)
T PF03370_consen 22 SGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQEY 101 (113)
T ss_dssp EEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTEEE
T ss_pred EEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCCEE
Confidence 334444443 688999999999987544321100000000111233478888888744 57889999996
Q ss_pred eecC
Q 015154 390 WKVD 393 (412)
Q Consensus 390 W~~D 393 (412)
|-.+
T Consensus 102 WDNN 105 (113)
T PF03370_consen 102 WDNN 105 (113)
T ss_dssp EEST
T ss_pred ecCC
Confidence 6443
No 56
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=56.24 E-value=19 Score=25.53 Aligned_cols=30 Identities=23% Similarity=0.572 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHhhhchhhHHHHHHh
Q 015154 66 NDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRR 102 (412)
Q Consensus 66 ~d~~ef~s~~~l~~~~vps~kels~hgr~dlan~vrr 102 (412)
+||++||.+.|+|...-. .-|.+|-+.||+
T Consensus 7 ~~L~~wL~~~gi~~~~~~-------~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSA-------KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHcCCCCCCCC-------CCHHHHHHHHHH
Confidence 689999999999876544 567888888875
No 57
>PLN03244 alpha-amylase; Provisional
Probab=55.95 E-value=9.2 Score=43.88 Aligned_cols=60 Identities=18% Similarity=0.399 Sum_probs=41.1
Q ss_pred EEEE-EEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE--EeCCe----eE---EEEEEEC
Q 015154 322 VVEI-QYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPG----TY---EIKFIVD 387 (412)
Q Consensus 322 ~VTF-tW~g~AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL--~LPPG----~Y---EYKFIVD 387 (412)
.++| .|.-+|.--.|.|+||||.+.....++. ..++.+-|.|.+.+ .|.+| .| ||.|.-|
T Consensus 132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 132 RVDFMDWAPGARYCAIIGDFNGWSPTENAAREG------HFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred CceeEeecCCcceeeeeccccCCCccccccccc------cccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 4555 5877799999999999999864443320 12345789999998 47777 23 5666544
No 58
>PLN02877 alpha-amylase/limit dextrinase
Probab=54.42 E-value=41 Score=39.41 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=41.7
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC------C
Q 015154 322 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------G 388 (412)
Q Consensus 322 ~VTFtW~g~-AkeV~LaGSFNNW~~-----~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVD------G 388 (412)
.++|+..++ |+.|.|.- |++|.. .++|. ...|+|++.+. ...| +.|+|.|+ |
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-------------~~~GVWsv~v~~~~~G-~~Y~Y~V~v~~p~~g 287 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-------------ESNGVWSVEGPKSWEG-CYYVYEVSVYHPSTG 287 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-------------CCCCEEEEEeccCCCC-CeeEEEEeecccCCC
Confidence 688986666 99999984 665532 23454 26899999986 3455 44777776 3
Q ss_pred e----eecCCCCCccc
Q 015154 389 Q----WKVDPQRESVT 400 (412)
Q Consensus 389 e----W~~DPd~PtVt 400 (412)
. ...||-...+.
T Consensus 288 ~~~~~~v~DPYA~als 303 (970)
T PLN02877 288 KVETCYANDPYARGLS 303 (970)
T ss_pred cccccccCCccceEEe
Confidence 2 24577665544
No 59
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=53.58 E-value=16 Score=26.14 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCCCC-CCCChHHHhhhchhhH
Q 015154 64 LYNDLREFLSTVGLSES-HVPSMKELSAHGRDDL 96 (412)
Q Consensus 64 l~~d~~ef~s~~~l~~~-~vps~kels~hgr~dl 96 (412)
++..|+..+....++++ .+||.+||+++=-...
T Consensus 1 i~~~l~~~i~~~~~~~~~~l~s~~~la~~~~vs~ 34 (60)
T smart00345 1 VAERLREDIVSGELRPGDKLPSERELAAQLGVSR 34 (60)
T ss_pred CHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCCCH
Confidence 35678888888877655 6899999998754443
No 60
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=52.73 E-value=15 Score=41.66 Aligned_cols=41 Identities=24% Similarity=0.492 Sum_probs=30.4
Q ss_pred EEEEEecC-CceEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEE
Q 015154 323 VEIQYSGD-GEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLW 374 (412)
Q Consensus 323 VTFtW~g~-AkeV~LaGSFNNW~~~I-pM~kd~ss~~~a~~~sk~~G~Fs~tL~ 374 (412)
|.|+-.++ ++.|.++|.||+|+... .|.. ....|.|++.++
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~-----------k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKP-----------KDDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCc-----------ccccceeEEecC
Confidence 78875554 99999999999998742 2331 137889998876
No 61
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=50.57 E-value=20 Score=40.08 Aligned_cols=63 Identities=29% Similarity=0.337 Sum_probs=48.3
Q ss_pred HHhhhccchhh-------hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchH
Q 015154 246 VIARRRENQLE-------IDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDE 308 (412)
Q Consensus 246 ~~~~~~~~~~e-------~~~l~~m~~qkele~~~~k~q~e~~K~aLa~l~~k~~~~i~~Aq~ll~eK~~ 308 (412)
+++.|.+=+.| |++||..+-|+++|+++||.+||.+.-++.-+....-.++.-...|+-.+.+
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~p 167 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQIP 167 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccCc
Confidence 44454444444 5678999999999999999999999999888777777777777777655544
No 62
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=50.29 E-value=33 Score=28.12 Aligned_cols=58 Identities=26% Similarity=0.294 Sum_probs=38.2
Q ss_pred eEEEEEEecCC---ceEEEEeee-CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-C-CeeecC
Q 015154 321 EVVEIQYSGDG---EIVEVAGSF-NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-D-GQWKVD 393 (412)
Q Consensus 321 ~~VTFtW~g~A---keV~LaGSF-NNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIV-D-GeW~~D 393 (412)
-.|.+.+.+++ ..|+|.++- ..| ++|.+. -...|.+.-.++.|-+.+|+-. | |+|..-
T Consensus 14 l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~------------wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 14 LAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRS------------WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp EEEEEEECCTTS-EEEEEEEETTSSS----EE-EEE------------CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred EEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecC------------cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 45777787652 679999554 458 588874 3568988777777889999988 7 887653
No 63
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=48.47 E-value=51 Score=29.85 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=34.9
Q ss_pred CCceEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEE
Q 015154 318 SGLEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIK 383 (412)
Q Consensus 318 sgL~~VTFtW~g~-AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYK 383 (412)
+.--+|+|.|... +..|...+...-|.. ..+.- +.+..|+.++.- ||.|.|+
T Consensus 59 ~pGDTVtw~~~d~~~Hnv~~~~~~~~~g~-~~~~~------------~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 59 KPGDTVTWVNTDSVGHNVTAVGGMDPEGS-GTLKA------------GINESFTHTFET-PGEYTYY 111 (128)
T ss_pred CCCCEEEEEECCCCCceEEEeCCCCcccc-ccccc------------CCCcceEEEecc-cceEEEE
Confidence 3345799999988 999999988854543 22221 123456666655 9999986
No 64
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=46.38 E-value=26 Score=32.46 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhhhc
Q 015154 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHG 92 (412)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~kels~hg 92 (412)
+.+.++|++-|.+=.+|+|. +||.+||+++=
T Consensus 11 ~~i~~~l~~~I~~g~~~~G~~LPsE~eLa~~~ 42 (238)
T TIGR02325 11 RQIADKIEQEIAAGHLRAGDYLPAEMQLAERF 42 (238)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHH
Confidence 67889999999998898886 99999999863
No 65
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=45.03 E-value=28 Score=32.46 Aligned_cols=30 Identities=30% Similarity=0.508 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhhh
Q 015154 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (412)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~kels~h 91 (412)
+.+.++|++-|.+=.+++|. +||-+||+++
T Consensus 3 ~qi~~~l~~~I~~g~~~~G~~LPsE~eLa~~ 33 (233)
T TIGR02404 3 EQIYQDLEQKITHGQYKEGDYLPSEHELMDQ 33 (233)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHH
Confidence 46889999999999999985 9999999986
No 66
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=45.00 E-value=62 Score=27.57 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=40.4
Q ss_pred EEEEEEe---cCCceEEEE-eeeCCC----c-cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE--CCe-
Q 015154 322 VVEIQYS---GDGEIVEVA-GSFNGW----H-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ- 389 (412)
Q Consensus 322 ~VTFtW~---g~AkeV~La-GSFNNW----~-~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIV--DGe- 389 (412)
+|+|+.+ ++.++|.|. |.-..| . ..++|.+.. .+..-..|++++.++..+..|.|.| +|+
T Consensus 22 ~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~--------~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~ 93 (120)
T PF02903_consen 22 TLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIA--------SDELFDYYEATLKLPEKRLRYYFELEDGGET 93 (120)
T ss_dssp EEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEE--------EESSEEEEEEEEE-TTSEEEEEEEEEETTEE
T ss_pred EEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEE--------eCCCeEEEEEEEECCCCeEEEEEEEEeCCEE
Confidence 4555443 347888885 666666 1 235787742 1223446899999999988888887 444
Q ss_pred eecCCCC
Q 015154 390 WKVDPQR 396 (412)
Q Consensus 390 W~~DPd~ 396 (412)
|.++...
T Consensus 94 ~~y~~~G 100 (120)
T PF02903_consen 94 YYYGERG 100 (120)
T ss_dssp EEEETTE
T ss_pred EEEeCCc
Confidence 5555444
No 67
>TIGR03337 phnR transcriptional regulator protein. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii.
Probab=41.43 E-value=51 Score=30.37 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhhhchh
Q 015154 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHGRD 94 (412)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~kels~hgr~ 94 (412)
+.+.++|++-|.+-++++|. +||.+||++.=.+
T Consensus 4 ~qi~~~l~~~I~~g~~~~g~~lPsE~eLa~~~~V 37 (231)
T TIGR03337 4 LYIKDHLSYQIRAGALLPGDKLPSERDLGERFNT 37 (231)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCC
Confidence 46889999999999998885 9999999987444
No 68
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=40.74 E-value=55 Score=34.51 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=30.2
Q ss_pred EEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE--EeCCeeEEEEEEECCe
Q 015154 335 EVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPGTYEIKFIVDGQ 389 (412)
Q Consensus 335 ~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL--~LPPG~YEYKFIVDGe 389 (412)
.+.|+|.+ ....+... ..+|.|+..+ ..+||+|+.++.+||.
T Consensus 152 ~vvg~f~D--dG~g~DE~-----------p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 152 IVVGEFED--DGEGLDER-----------PGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEEeecc--CCccCCCC-----------CCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 46777753 23445433 3689998876 4689999999999984
No 69
>TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators.
Probab=40.58 E-value=36 Score=31.69 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhhh
Q 015154 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (412)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~kels~h 91 (412)
+++.++|++-|.+=.+++|. +||-+||++.
T Consensus 4 ~qi~~~l~~~I~~g~~~~g~~LPsE~eLa~~ 34 (230)
T TIGR02018 4 QRIKQDILERIRSGEWPPGHRIPSEHELVAQ 34 (230)
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHH
Confidence 57889999999999999886 9999999975
No 70
>PRK14999 histidine utilization repressor; Provisional
Probab=40.56 E-value=35 Score=32.10 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHhcCCCCCC-CCChHHHhhh
Q 015154 61 NEELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (412)
Q Consensus 61 ~~~l~~d~~ef~s~~~l~~~~-vps~kels~h 91 (412)
=+.+.++|++-|.+-.+++|. +||-+||++.
T Consensus 14 y~qi~~~i~~~I~~g~~~~G~~LPsE~eLa~~ 45 (241)
T PRK14999 14 YETVKQDICKKIAGGVWQPHDRIPSEAELVAQ 45 (241)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCCCHHHHHHH
Confidence 378899999999999999996 9999999986
No 71
>PRK12423 LexA repressor; Provisional
Probab=38.06 E-value=37 Score=31.73 Aligned_cols=43 Identities=21% Similarity=0.401 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCChHHHhhhchhhH--HHHHHhhhHHHHHHHHh
Q 015154 61 NEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDL--ANIVRRRGYKFIRQLLK 113 (412)
Q Consensus 61 ~~~l~~d~~ef~s~~~l~~~~vps~kels~hgr~dl--an~vrrrgyk~i~~l~~ 113 (412)
..+++.-|++|+..-|+| ||++||++| .++ -+.|| ++++.|-.
T Consensus 8 q~~il~~l~~~i~~~g~~----Ps~~eia~~--~g~~s~~~v~----~~l~~L~~ 52 (202)
T PRK12423 8 RAAILAFIRERIAQAGQP----PSLAEIAQA--FGFASRSVAR----KHVQALAE 52 (202)
T ss_pred HHHHHHHHHHHHHHcCCC----CCHHHHHHH--hCCCChHHHH----HHHHHHHH
Confidence 468999999999999999 999999984 343 24454 57777765
No 72
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.56 E-value=28 Score=38.23 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=21.0
Q ss_pred CCCcEEEEEEeCCe-eEEEEEEECC
Q 015154 365 KSRLWSTVLWLYPG-TYEIKFIVDG 388 (412)
Q Consensus 365 ~~G~Fs~tL~LPPG-~YEYKFIVDG 388 (412)
.+|.|.+.++++|| .|.|+|.||+
T Consensus 96 ~DG~~~TqCPI~Pg~~~tY~F~v~~ 120 (563)
T KOG1263|consen 96 QDGVYITQCPIQPGENFTYRFTVKD 120 (563)
T ss_pred ccCCccccCCcCCCCeEEEEEEeCC
Confidence 35588899999999 8999999994
No 73
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.53 E-value=58 Score=33.21 Aligned_cols=45 Identities=31% Similarity=0.324 Sum_probs=32.7
Q ss_pred ccCCchhhHHhhhccchhhhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 015154 238 DFDSSEVEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLA 284 (412)
Q Consensus 238 ~~d~~~~~~~~~~~~~~~e~~~l~~m~~qkele~~~~k~q~e~~K~a 284 (412)
|.|.+|-+|.+-+- ..||++|+-|||||.+++..--.||-+-|+-
T Consensus 217 D~~~~dh~V~i~~l--keeia~Lkk~L~qkdq~ileKdkqisnLKad 261 (305)
T KOG3990|consen 217 DRDPGDHMVKIQKL--KEEIARLKKLLHQKDQLILEKDKQISNLKAD 261 (305)
T ss_pred CCCCcchHHHHHHH--HHHHHHHHHHHhhhHHHHHhhhhhhhccCcc
Confidence 77777755544443 3589999999999999987776676655553
No 74
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=33.77 E-value=14 Score=30.96 Aligned_cols=14 Identities=57% Similarity=1.486 Sum_probs=0.0
Q ss_pred ccccCCCCCceeeEEEeeec
Q 015154 19 LWQWHPPRKHLSFTICCASS 38 (412)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~s 38 (412)
+||||| |||.+++.
T Consensus 47 ~~q~HP------FTIas~~~ 60 (105)
T PF08022_consen 47 FWQWHP------FTIASSPE 60 (105)
T ss_dssp --------------------
T ss_pred cccccc------cEeeccCC
Confidence 799998 77755443
No 75
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=33.09 E-value=42 Score=27.47 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=28.9
Q ss_pred CCCCCCCChHHHhhhchhhHHHHHHhhhHHHHHHH
Q 015154 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQL 111 (412)
Q Consensus 77 l~~~~vps~kels~hgr~dlan~vrrrgyk~i~~l 111 (412)
+|-.|+++..||.+..+.+|+.+++ .+.+.+++.
T Consensus 42 iPk~h~~~~~~l~~~~~~~l~~~~~-~~~~~l~~~ 75 (104)
T cd01278 42 IPKEHIASLKALTKEDVPLLEHMET-VGREKLLRS 75 (104)
T ss_pred EecCCCCChHHCCHhHHHHHHHHHH-HHHHHHHHH
Confidence 5788999999999999999999988 677766554
No 76
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=32.18 E-value=71 Score=30.41 Aligned_cols=40 Identities=33% Similarity=0.776 Sum_probs=22.9
Q ss_pred CCCccccccCCCCCCCccccccccCCCcEEEEEEeC-CeeEEEEEE--EC--CeeecC
Q 015154 341 NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY-PGTYEIKFI--VD--GQWKVD 393 (412)
Q Consensus 341 NNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LP-PG~YEYKFI--VD--GeW~~D 393 (412)
..|. .++|... .+..|...+.+. +|.|+|+.. +| +.|.++
T Consensus 55 ~~w~-~vpM~~~------------gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQ-EVPMTPL------------GNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EES------------TS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Ccce-eeccccC------------CCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 4686 4899863 678999999774 899999976 46 456553
No 77
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=31.28 E-value=55 Score=25.95 Aligned_cols=26 Identities=23% Similarity=0.603 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCChHHHhhh
Q 015154 62 EELYNDLREFLSTVGLSESHVPSMKELSAH 91 (412)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~vps~kels~h 91 (412)
.+++.=|++|+..-|.| ||.+|+++|
T Consensus 9 ~~vL~~I~~~~~~~G~~----Pt~rEIa~~ 34 (65)
T PF01726_consen 9 KEVLEFIREYIEENGYP----PTVREIAEA 34 (65)
T ss_dssp HHHHHHHHHHHHHHSS-------HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC----CCHHHHHHH
Confidence 46788889999998888 799999887
No 78
>PRK11402 DNA-binding transcriptional regulator FrlR; Provisional
Probab=31.27 E-value=60 Score=30.48 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhhh
Q 015154 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (412)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~kels~h 91 (412)
+.+.++|++-|.+=.+|+|. +||-+||++.
T Consensus 12 ~qI~~~i~~~I~~G~~~~g~kLPsE~eLa~~ 42 (241)
T PRK11402 12 ATVRQRLLDDIAQGVYQAGQQIPTENELCTQ 42 (241)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHH
Confidence 68889999999999999987 9999999874
No 79
>PRK04984 fatty acid metabolism regulator; Provisional
Probab=31.24 E-value=62 Score=30.13 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhhh
Q 015154 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (412)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~kels~h 91 (412)
+.+++.|++.|-+-.|++|. +||.+||+..
T Consensus 10 ~~~~~~l~~~I~~g~l~pG~~LPsE~eLae~ 40 (239)
T PRK04984 10 GFAEEYIIESIWNNRFPPGSILPAERELSEL 40 (239)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCCCHHHHHHH
Confidence 56899999999999999998 7999999875
No 80
>PRK09764 DNA-binding transcriptional repressor MngR; Provisional
Probab=31.09 E-value=61 Score=30.54 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhhh
Q 015154 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (412)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~kels~h 91 (412)
+.+.++|++-|.+=.+++|. +||-+||++.
T Consensus 8 ~qi~~~L~~~I~~g~~~~G~~LPsE~eL~~~ 38 (240)
T PRK09764 8 RQIADRIREQIARGELKPGDALPTESALQTE 38 (240)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCCCHHHHHHH
Confidence 57889999999999999996 9999999875
No 81
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=29.61 E-value=87 Score=26.44 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=25.3
Q ss_pred CCCcEEEEEEeCCeeEEEEEEECCeeecCCCCCc
Q 015154 365 KSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 398 (412)
Q Consensus 365 ~~G~Fs~tL~LPPG~YEYKFIVDGeW~~DPd~Pt 398 (412)
..|.=++.+.|+||+|....+. |.+.+-|..|.
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 4566678889999999999887 66666666654
No 82
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=29.10 E-value=1.2e+02 Score=25.10 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=9.3
Q ss_pred CcEEEEE-EeCCeeEEE
Q 015154 367 RLWSTVL-WLYPGTYEI 382 (412)
Q Consensus 367 G~Fs~tL-~LPPG~YEY 382 (412)
..+++++ .+.||.|+|
T Consensus 74 ~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 74 ETATVTFTPLKPGEYEF 90 (104)
T ss_dssp -EEEEEEEE-S-EEEEE
T ss_pred CEEEEEEcCCCCEEEEE
Confidence 3456665 789999877
No 83
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=27.91 E-value=1.9e+02 Score=22.60 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=56.1
Q ss_pred CCCceeeEEEeeecCCCCCCCCCCCCCCcccccccCcHHHHHHHHHHHHhcCCCCCCCCChHHHhhhchhhHHHHHHhhh
Q 015154 25 PRKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRG 104 (412)
Q Consensus 25 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~r~~~~~k~~~~l~~d~~ef~s~~~l~~~~vps~kels~hgr~dlan~vrrrg 104 (412)
...|..|.|.+-+.. .......|||++=.+|.+.|++......+|+ +|.-+-... ...+...--|..=
T Consensus 14 ~~~~~~Y~i~v~~~~---------~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~--lP~k~~~~~-~~~~~~~~R~~~L 81 (106)
T cd06093 14 GKKYVVYIIEVTTQG---------GEEWTVYRRYSDFEELHEKLKKKFPGVILPP--LPPKKLFGN-LDPEFIEERRKQL 81 (106)
T ss_pred CCCEEEEEEEEEECC---------CCeEEEEeehHHHHHHHHHHHHHCCCCccCC--CCCCccccc-CCHHHHHHHHHHH
Confidence 356777777766644 3456788999999999999999876556665 333222211 2344444445556
Q ss_pred HHHHHHHHhCCCCCCCC
Q 015154 105 YKFIRQLLKSSTKPGFN 121 (412)
Q Consensus 105 yk~i~~l~~~~~~~~~~ 121 (412)
.+++..|+.++..-.+.
T Consensus 82 ~~yl~~l~~~~~~~~~~ 98 (106)
T cd06093 82 EQYLQSLLNHPELRNSE 98 (106)
T ss_pred HHHHHHHhcCcccccCh
Confidence 78999999998765444
No 84
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=26.88 E-value=2e+02 Score=25.29 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=11.5
Q ss_pred eEEEEEEecCCceEEE
Q 015154 321 EVVEIQYSGDGEIVEV 336 (412)
Q Consensus 321 ~~VTFtW~g~AkeV~L 336 (412)
-+|+|.|...+..|..
T Consensus 23 dTV~f~n~d~~Hnv~~ 38 (116)
T TIGR02375 23 DTVTFVPTDKGHNVET 38 (116)
T ss_pred CEEEEEECCCCeeEEE
Confidence 3788888877766654
No 85
>PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional
Probab=26.47 E-value=78 Score=29.79 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCChHHHhhh
Q 015154 62 EELYNDLREFLSTVGLSES-HVPSMKELSAH 91 (412)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~-~vps~kels~h 91 (412)
+.+.++|++-|.. .+++| .+||-+||++.
T Consensus 15 ~qi~~~L~~~I~~-~~~~G~~LPsE~eLa~~ 44 (241)
T PRK10079 15 QEIAAKLEQELRQ-HYRCGDYLPAEQQLAAR 44 (241)
T ss_pred HHHHHHHHHHHhc-ccCCCCcCCCHHHHHHH
Confidence 7889999999987 88776 69999999986
No 86
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=26.21 E-value=1.2e+02 Score=22.00 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhhhchhh
Q 015154 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHGRDD 95 (412)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~kels~hgr~d 95 (412)
.+++.+|+.++....++.|. +|+.++|++|=...
T Consensus 4 ~~~~~~i~~~i~~~~~~~~~~~~~~~~la~~~~is 38 (66)
T cd07377 4 EQIADQLREAILSGELKPGDRLPSERELAEELGVS 38 (66)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCC
Confidence 57888999999888886665 67799998875443
No 87
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.07 E-value=57 Score=36.27 Aligned_cols=27 Identities=22% Similarity=0.591 Sum_probs=22.9
Q ss_pred eCCeeEEEEEEECCeeec---CCCCCcccC
Q 015154 375 LYPGTYEIKFIVDGQWKV---DPQRESVTK 401 (412)
Q Consensus 375 LPPG~YEYKFIVDGeW~~---DPd~PtVtD 401 (412)
-+.|.|++||.++|+|+. |...|+..+
T Consensus 114 ~yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 114 NYAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred ccceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 467999999999999975 888888764
No 88
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=25.98 E-value=67 Score=23.90 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=13.8
Q ss_pred EEEeCCeeEEEEEEE---CCeeecCC
Q 015154 372 VLWLYPGTYEIKFIV---DGQWKVDP 394 (412)
Q Consensus 372 tL~LPPG~YEYKFIV---DGeW~~DP 394 (412)
-..||||.|.++-.+ +|.|..++
T Consensus 33 ~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 33 YTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEeCCCEEEEEEEEEECCCCCcCccc
Confidence 347999999988776 57887765
No 89
>PRK03837 transcriptional regulator NanR; Provisional
Probab=25.65 E-value=90 Score=28.94 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHHHhcCCCCCC-CCChHHHhhhc
Q 015154 60 SNEELYNDLREFLSTVGLSESH-VPSMKELSAHG 92 (412)
Q Consensus 60 ~~~~l~~d~~ef~s~~~l~~~~-vps~kels~hg 92 (412)
--+.++..|++-|-+-.||+|. +||.+||+.+=
T Consensus 14 ~~~~v~~~l~~~I~~g~l~pG~~Lp~E~~Lae~~ 47 (241)
T PRK03837 14 LSEEVEERLEQMIRSGEFGPGDQLPSERELMAFF 47 (241)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHh
Confidence 3478999999999999999996 89999999873
No 90
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=25.50 E-value=1.2e+02 Score=32.86 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhhhccccccccccchH-----HHHHHHhhCCCceEEEEEEecCCceEEEEeeeCC
Q 015154 283 LALSVLQTKAVTEINKAEKLISDKDE-----ELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNG 342 (412)
Q Consensus 283 ~aLa~l~~k~~~~i~~Aq~ll~eK~~-----~LdaAe~aLsgL~~VTFtW~g~AkeV~LaGSFNN 342 (412)
+++.+-......++...++.++.|-+ .+.-...+..+.+|+.+.....-.++.++|||.|
T Consensus 133 a~~Rl~k~re~~e~p~~~~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG 197 (459)
T KOG0272|consen 133 AKLRLQKARERREIPDTEKALSRKEALKHLQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSG 197 (459)
T ss_pred HHHHHHHHHHhhcCCcchhhhHHHHHHHHhhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCC
Confidence 33433334444566666666655444 3444556678889999988888888999999986
No 91
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=25.47 E-value=1.6e+02 Score=23.56 Aligned_cols=87 Identities=17% Similarity=0.189 Sum_probs=56.5
Q ss_pred CCceeeEEEeeecCCCCCCCCCCCCCCcccccccCcHHHHHHHHHHHHhcCCCCCCCCChHHHhh--hchhhHHHHHHhh
Q 015154 26 RKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSA--HGRDDLANIVRRR 103 (412)
Q Consensus 26 ~~~~~~~~~~~~s~~~~~~~~~~~~~~r~~~~~k~~~~l~~d~~ef~s~~~l~~~~vps~kels~--hgr~dlan~vrrr 103 (412)
.+|--+++.+-+... .......||+++=.+|...|++-.....||+ +|..+-+.. ....+...--|+.
T Consensus 10 ~~~~~~~~~v~~~~~--------~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~--lP~k~~~~~~~~~~~~~i~~R~~~ 79 (105)
T smart00312 10 GKHYYYVIEIETKTG--------LEEWTVSRRYSDFLELHSKLKKHFPRRILPP--LPPKKLFGRLNNFSEEFIEKRRRG 79 (105)
T ss_pred CceEEEEEEEEECCC--------CceEEEEEEHHHHHHHHHHHHHHCcCCCCCC--CCCchhcccCCcCCHHHHHHHHHH
Confidence 456666666665541 1456788999999999999998776666774 676554432 2233444444444
Q ss_pred hHHHHHHHHhCCCCCC-CCc
Q 015154 104 GYKFIRQLLKSSTKPG-FNG 122 (412)
Q Consensus 104 gyk~i~~l~~~~~~~~-~~~ 122 (412)
=-.+++.|++++.... |..
T Consensus 80 L~~yL~~l~~~~~~~~~s~~ 99 (105)
T smart00312 80 LERYLQSLLNHPELINESEV 99 (105)
T ss_pred HHHHHHHHHcCHhhhccChH
Confidence 4579999999887554 543
No 92
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=25.40 E-value=51 Score=26.80 Aligned_cols=16 Identities=38% Similarity=0.825 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHHHhcC
Q 015154 61 NEELYNDLREFLSTVG 76 (412)
Q Consensus 61 ~~~l~~d~~ef~s~~~ 76 (412)
.+++..+||+|+|..|
T Consensus 4 re~i~~~iR~~fs~lG 19 (62)
T PF15513_consen 4 REEITAEIRQFFSQLG 19 (62)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4678889999998877
No 93
>PRK09464 pdhR transcriptional regulator PdhR; Reviewed
Probab=24.67 E-value=98 Score=29.16 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=28.5
Q ss_pred CcHHHHHHHHHHHHhcCCCCCC-CCChHHHhhh
Q 015154 60 SNEELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (412)
Q Consensus 60 ~~~~l~~d~~ef~s~~~l~~~~-vps~kels~h 91 (412)
--+.+++.|++.|-.-.|+||. +||-+||++.
T Consensus 11 ~~~~v~~~l~~~I~~g~l~pG~~LpsE~eLa~~ 43 (254)
T PRK09464 11 LSDVIEQQLEFLILEGTLRPGEKLPPERELAKQ 43 (254)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCCCHHHHHHH
Confidence 3467999999999999999998 6999999876
No 94
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=24.34 E-value=1.8e+02 Score=25.40 Aligned_cols=27 Identities=26% Similarity=0.727 Sum_probs=19.9
Q ss_pred CCcEEEEEEeCCeeEEEEEEECCeeecCCCC
Q 015154 366 SRLWSTVLWLYPGTYEIKFIVDGQWKVDPQR 396 (412)
Q Consensus 366 ~G~Fs~tL~LPPG~YEYKFIVDGeW~~DPd~ 396 (412)
.-.|-.. |.|-|+|.|. +|.|+++-+.
T Consensus 57 ~QIWlas---~sG~~hf~~~-~~~W~~~r~g 83 (105)
T PRK00446 57 HELWLAA---KSGGFHFDYK-DGEWICDRSG 83 (105)
T ss_pred hheeEec---CCCCccceec-CCeEEECCCC
Confidence 4477766 4677888885 9999998554
No 95
>PRK10785 maltodextrin glucosidase; Provisional
Probab=24.23 E-value=2.6e+02 Score=30.60 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=37.9
Q ss_pred eEEEEEEecC--CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeC--CeeEEEEEEE--CCe
Q 015154 321 EVVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PGTYEIKFIV--DGQ 389 (412)
Q Consensus 321 ~~VTFtW~g~--AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LP--PG~YEYKFIV--DGe 389 (412)
..++++-..+ ...|.|.-..++-...++|.+... +.....|++++.++ ++++.|.|.+ +|+
T Consensus 21 ~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~--------~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 21 LLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRS--------QPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred EEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeec--------CCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 4444444322 568888665555445578887521 11223588999885 7888888888 554
No 96
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=24.09 E-value=9 Score=33.19 Aligned_cols=22 Identities=41% Similarity=0.736 Sum_probs=16.7
Q ss_pred HHHhhhchhhHHHHHHhhhHHH
Q 015154 86 KELSAHGRDDLANIVRRRGYKF 107 (412)
Q Consensus 86 kels~hgr~dlan~vrrrgyk~ 107 (412)
|.|..+|+.++...||+.||+|
T Consensus 204 ~Kl~~~~~~~~i~~~~~~Gy~~ 225 (226)
T TIGR02154 204 KALNPFGLEDPVQTVRGAGYRF 225 (226)
T ss_pred HhhccCCCCCcEEEecccceEe
Confidence 4566677778888888888875
No 97
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=23.95 E-value=78 Score=25.90 Aligned_cols=35 Identities=20% Similarity=0.505 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCCCCCCChHHHhhhchhhHHHHHHhhhHH
Q 015154 67 DLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYK 106 (412)
Q Consensus 67 d~~ef~s~~~l~~~~vps~kels~hgr~dlan~vrrrgyk 106 (412)
=++.|+..+| .|+.+.|++-+-.||..++|+.||.
T Consensus 17 ~~~~l~~~~g-----~pt~~~l~~~~~~el~~~i~~~G~~ 51 (108)
T PF00730_consen 17 IYRRLFERYG-----FPTPEALAEASEEELRELIRPLGFS 51 (108)
T ss_dssp HHHHHHHHHS-----CSSHHHHHCSHHHHHHHHHTTSTSH
T ss_pred HHHHHHHHhc-----CCCHHHHHhCCHHHHHHHhhccCCC
Confidence 3556777778 8999999999999999999999976
No 98
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=23.79 E-value=99 Score=29.26 Aligned_cols=30 Identities=17% Similarity=0.442 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHhhh
Q 015154 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (412)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~~-vps~kels~h 91 (412)
+.+++.|++-|-+-.|+||. +||.+||+..
T Consensus 5 ~~v~~~L~~~I~~g~l~pG~~LpsE~eLae~ 35 (253)
T PRK10421 5 DEVADRVRALIEEKNLEAGMKLPAERQLAMQ 35 (253)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCCCHHHHHHH
Confidence 57899999999999999996 7999999875
No 99
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=23.61 E-value=2.9e+02 Score=24.56 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=19.0
Q ss_pred EeCCeeEEEEEEE---CCeeecCCCCCc
Q 015154 374 WLYPGTYEIKFIV---DGQWKVDPQRES 398 (412)
Q Consensus 374 ~LPPG~YEYKFIV---DGeW~~DPd~Pt 398 (412)
.|+||.|.++-.+ ++.|....+..+
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F~I 129 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDFTI 129 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEEEE
Confidence 6899999999888 356887765443
No 100
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=22.65 E-value=2.2e+02 Score=25.08 Aligned_cols=89 Identities=20% Similarity=0.127 Sum_probs=61.5
Q ss_pred CCceeeEEEeeecCCCCCCCCCCCCCCcccccccCcHHHHHHHHHHHHhc---CCCCCCCCChHHHhhhchhhHHHHHHh
Q 015154 26 RKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKSNEELYNDLREFLSTV---GLSESHVPSMKELSAHGRDDLANIVRR 102 (412)
Q Consensus 26 ~~~~~~~~~~~~s~~~~~~~~~~~~~~r~~~~~k~~~~l~~d~~ef~s~~---~l~~~~vps~kels~hgr~dlan~vrr 102 (412)
+...-|.|..-|.-...+.+......--..|||.+=.+|-+-|+++.... .|| .|..|=+ |..|-+-+-+|
T Consensus 24 ~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP---~ppKk~~---~~~~~~fle~R 97 (127)
T cd06878 24 KEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKECSSWLKKVELP---SLSKKWF---KSIDKKFLDKS 97 (127)
T ss_pred eEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHHCCCccccCCC---CCCcccc---ccCCHHHHHHH
Confidence 34556777766665444555666667788999999999999999998764 454 2344433 34466666666
Q ss_pred h--hHHHHHHHHhCCCCCCC
Q 015154 103 R--GYKFIRQLLKSSTKPGF 120 (412)
Q Consensus 103 r--gyk~i~~l~~~~~~~~~ 120 (412)
| -.++++.||+++.-..+
T Consensus 98 r~~Le~YLq~ll~~~~l~~s 117 (127)
T cd06878 98 KNQLQKYLQFILEDETLCQS 117 (127)
T ss_pred HHHHHHHHHHHhCChhhcCC
Confidence 6 68999999988754333
No 101
>PF06252 DUF1018: Protein of unknown function (DUF1018); InterPro: IPR009363 This family consists of several bacterial and phage proteins, related to Gp16 of phage Mu, of unknown function.
Probab=22.36 E-value=53 Score=28.33 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=27.9
Q ss_pred HHHHHhcCCCCCCCCChHHHhhhchhhHHHHHHhhhHH
Q 015154 69 REFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYK 106 (412)
Q Consensus 69 ~ef~s~~~l~~~~vps~kels~hgr~dlan~vrrrgyk 106 (412)
|.+|.. ..-+-|+|+|+..++..+.+..+++|+|
T Consensus 7 R~~L~~----~~Gk~S~k~lt~~el~~vl~~l~~~G~k 40 (119)
T PF06252_consen 7 RALLQR----VTGKSSSKDLTEAELEKVLDELKRLGFK 40 (119)
T ss_pred HHHHHH----HhChhhHHHCCHHHHHHHHHHHHHccCc
Confidence 444554 2457799999999999999999999995
No 102
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=21.45 E-value=2.8e+02 Score=24.38 Aligned_cols=91 Identities=21% Similarity=0.219 Sum_probs=55.6
Q ss_pred CCceeeEEEeeecCCCCCCCCC---CCCCCcccccccCcHHHHHHHHHHHHhcCCCCCCCCChHHHhhhchhhHHHHHHh
Q 015154 26 RKHLSFTICCASSSSSNKSSSS---SSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRR 102 (412)
Q Consensus 26 ~~~~~~~~~~~~s~~~~~~~~~---~~~~~r~~~~~k~~~~l~~d~~ef~s~~~l~~~~vps~kels~hgr~dlan~vrr 102 (412)
..|..++|...-+..+.....+ ........|||.+=..|..-|.+-....-+|+ +|..+-+. +.. ...- ||
T Consensus 18 ~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPp--lP~K~~~~--~~~-~ie~-Rr 91 (120)
T cd06868 18 SGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEKYPGTILPP--LPRKALFV--SES-DIRE-RR 91 (120)
T ss_pred CCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHHHCCCCCCCC--CCCCcccC--CHH-HHHH-HH
Confidence 3467777766644422221111 11134689999999999999987655444554 67777665 333 3332 55
Q ss_pred hh-HHHHHHHHhCCCCCCCCc
Q 015154 103 RG-YKFIRQLLKSSTKPGFNG 122 (412)
Q Consensus 103 rg-yk~i~~l~~~~~~~~~~~ 122 (412)
+| .+|++.+++++.-..|..
T Consensus 92 ~~Le~fL~~i~~~p~l~~s~~ 112 (120)
T cd06868 92 AAFNDFMRFISKDEKLANCPE 112 (120)
T ss_pred HHHHHHHHHHHcChhhhcCHH
Confidence 55 569999998886555443
No 103
>COG2188 PhnF Transcriptional regulators [Transcription]
Probab=21.08 E-value=1.2e+02 Score=28.83 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCChHHHhhh
Q 015154 62 EELYNDLREFLSTVGLSES-HVPSMKELSAH 91 (412)
Q Consensus 62 ~~l~~d~~ef~s~~~l~~~-~vps~kels~h 91 (412)
+.+.++|++-|.+=.+|+| .+||-.||+++
T Consensus 10 ~qI~~~i~~~I~~G~~~~G~~LPsE~eLa~~ 40 (236)
T COG2188 10 QQIAEDIRQRIESGELPPGDKLPSERELAEQ 40 (236)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Confidence 5688999999999999999 69999999976
No 104
>PF04985 Phage_tube: Phage tail tube protein FII; InterPro: IPR006498 This entry is represented by Bacteriophage P2, FII, the major tail tube protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tails of some phage are contractile. These sequences represent the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from other phage.
Probab=20.65 E-value=3.2e+02 Score=24.70 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=32.7
Q ss_pred ceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCe--eecCCCCCccc
Q 015154 332 EIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQ--WKVDPQRESVT 400 (412)
Q Consensus 332 keV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGe--W~~DPd~PtVt 400 (412)
-.+.+.|.+..|+. -.++. .+....+.++ -.+.||+.|||+ +.+|.-+.+..
T Consensus 98 ~~~~~~G~~~~~~~-g~~k~------------g~~~~~~~~~----~v~yyk~~idG~~~~eiD~~n~i~~ 151 (167)
T PF04985_consen 98 VVAVIRGRIKSVDP-GEWKP------------GEKTETSIEF----SVTYYKLEIDGKEIIEIDKLNNIYR 151 (167)
T ss_pred EEEEEEEEEEeeCC-cccCc------------CccccceEEE----EEEEEEEEECCEEEEEEECccCEEE
Confidence 34677788877754 22322 1222333333 268999999997 77888888654
No 105
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=20.48 E-value=1e+02 Score=30.95 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=21.4
Q ss_pred eCCeeEEEEEEECCeeec---CCCCCccc
Q 015154 375 LYPGTYEIKFIVDGQWKV---DPQRESVT 400 (412)
Q Consensus 375 LPPG~YEYKFIVDGeW~~---DPd~PtVt 400 (412)
-+.|.|.++|.++|.|+. |+.-|+..
T Consensus 98 ~~~G~y~vrl~~~G~w~~V~VDd~lP~~~ 126 (318)
T smart00230 98 NYAGIFHFRFWRFGKWVDVVIDDRLPTYN 126 (318)
T ss_pred ccCCEEEEEEEECCEEEEEEecCCCeeeC
Confidence 467999999999999876 88878643
No 106
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=20.43 E-value=67 Score=24.37 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=12.4
Q ss_pred cCCCCCCCCChHHHh
Q 015154 75 VGLSESHVPSMKELS 89 (412)
Q Consensus 75 ~~l~~~~vps~kels 89 (412)
.+||+||+|+.|-+-
T Consensus 34 mELP~Yr~P~~~~vl 48 (54)
T PF07664_consen 34 MELPPYRMPRLKNVL 48 (54)
T ss_pred EeCCCCCCCCHHHHH
Confidence 579999999988654
Done!