BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015155
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 134/234 (57%), Gaps = 7/234 (2%)
Query: 140 SSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTL 199
+ Y ++ ++VGI L ++V++ +I V TVG G+MG +GNKG V++ H T
Sbjct: 74 AKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTS 133
Query: 200 FCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 259
C V +HL + ++ + +RN D +I R F P +I +H+ I+WLGDLNYR
Sbjct: 134 ICVVNSHLAAHIEEYE--RRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYR 191
Query: 260 I-NLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKY 318
I L EK ++LI +K + L DQL ++ F+G++EG L F PTYKY+ S+ +
Sbjct: 192 IEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDW 251
Query: 319 YGEDPKVGRRNPSWCDRILSYGKGMRLLNYRRN-EIKMSDHRPVTATYMAEVEV 371
D R P+WCDRIL GK + L+Y+ + +K SDH+PV++ + V V
Sbjct: 252 ---DTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRV 302
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 135/236 (57%), Gaps = 7/236 (2%)
Query: 140 SSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTL 199
+ Y ++ ++VGI L ++V++ +I V TVG G+MG +GNKG V++ H T
Sbjct: 77 AKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTS 136
Query: 200 FCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 259
C V +HL + ++ + +RN D +I R F P +I +H+ I+WLGDLNYR
Sbjct: 137 ICVVNSHLAAHIEEYE--RRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYR 194
Query: 260 I-NLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKY 318
I L EK ++LI +K + L DQL ++ F+G++EG L F PTYKY+ S+ +
Sbjct: 195 IEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDW 254
Query: 319 YGEDPKVGRRNPSWCDRILSYGKGMRLLNYRRN-EIKMSDHRPVTATYMAEVEVFS 373
D R P+WCDRIL GK + L+Y+ + +K SDH+PV++ + V V +
Sbjct: 255 ---DTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRVVA 307
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 12/228 (5%)
Query: 142 YVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFC 201
YV++ S Q+VG L I+ + S I+NV + G+ G GNKG+V++ T C
Sbjct: 102 YVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLC 161
Query: 202 FVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 261
F+ +HL +G + DE R+ D I FR +SI +H+ ++W GD NYRI+
Sbjct: 162 FITSHLAAGYTNYDE--RDHDYRTIASGLRFRRG------RSIFNHDYVVWFGDFNYRIS 213
Query: 262 LPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGE 321
L YE+ I++ + S L E DQL +++ G+ F +SE + F PTYK+++ ++ Y
Sbjct: 214 LTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIY--- 270
Query: 322 DPKVGRRNPSWCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEV 369
D R P+W DRIL G+ + +Y+ + SDHRP+ ATY A +
Sbjct: 271 DTSDKHRVPAWTDRILYRGE-LVPHSYQSVPLYYSDHRPIYATYEANI 317
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 115/236 (48%), Gaps = 11/236 (4%)
Query: 142 YVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFC 201
Y + + + I + + V+ I +V S+V G+ +GNKG+V VS + T F
Sbjct: 81 YRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFG 140
Query: 202 FVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 261
FV HLTSG + +RN + +I R F S+ + W GDLNYR++
Sbjct: 141 FVNCHLTSGNEK--TARRNQNYLDILRLLSLGDRQLNAFDISL-RFTHLFWFGDLNYRLD 197
Query: 262 LPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYG- 320
+ ++ IS+K++ L DQL E K + F +SE + F PTY+YE S Y
Sbjct: 198 MDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAW 257
Query: 321 --EDPKVGRRN-PSWCDRIL--SYGKGMRLLNYR--RNEIKMSDHRPVTATYMAEV 369
+ P R N PSWCDRIL SY + + N ++I SDH PV T+ V
Sbjct: 258 HKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGV 313
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 123/260 (47%), Gaps = 34/260 (13%)
Query: 131 ETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVS 190
ET ++ YV + S +++++++RR L V STV ++ I KG++
Sbjct: 76 ETRLQETLGPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALG 135
Query: 191 VSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICD---- 246
+S + T F F+ +H TSG DG +R D + R+ + P+++ D
Sbjct: 136 ISFTFFGTSFLFITSHFTSG--DGKVAERLLD--------YTRTVQALVLPRNVPDTNPY 185
Query: 247 ----------HERIIWLGDLNYRINLPYEKTRELISKK---QWSKLAESDQLLRELRKGR 293
+ + W GD N+R++ L+ + L + DQL+RE+RKG
Sbjct: 186 RSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRKGS 245
Query: 294 AFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRIL--SYGKG-MRLLNYRR 350
F G+ E + F P+YK+++ + Y D +R PS+ DR+L S KG + ++Y
Sbjct: 246 IFKGFQEPDIHFLPSYKFDIGKDTY---DSTSKQRTPSYTDRVLYRSRHKGDICPVSYSS 302
Query: 351 NE-IKMSDHRPVTATYMAEV 369
IK SDHRPV + +V
Sbjct: 303 CPGIKTSDHRPVYGLFRVKV 322
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 24/183 (13%)
Query: 187 GSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICD 246
G + S +I+ F F + R +D T + + + + K
Sbjct: 116 GGIVTSFTIYNKRFSFTTS-------------RMSDEDVTSTNTKYAYDTRLDYSKKDDP 162
Query: 247 HERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFA 306
+ + W+GDLN R+ + L+ + L DQL ++ ++ + FDGW+E + F
Sbjct: 163 SDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQL-KKAKEQKLFDGWTEPQVTFK 221
Query: 307 PTYKYELNSEKYYGEDPKVGRRNPSWCDRIL---SYGKGMRLLNYRR-NEIKMSDHRPVT 362
PTYK++ N+++Y PSW DR L GK ++ L+Y K ++HRPV
Sbjct: 222 PTYKFKPNTDEY------DLSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVL 275
Query: 363 ATY 365
A +
Sbjct: 276 AKF 278
>pdb|3FP9|A Chain A, Crystal Structure Of Intern Domain Of
Proteasome-Associated Atpase, Mycobacterium Tuberculosis
pdb|3FP9|B Chain B, Crystal Structure Of Intern Domain Of
Proteasome-Associated Atpase, Mycobacterium Tuberculosis
pdb|3FP9|C Chain C, Crystal Structure Of Intern Domain Of
Proteasome-Associated Atpase, Mycobacterium Tuberculosis
pdb|3FP9|D Chain D, Crystal Structure Of Intern Domain Of
Proteasome-Associated Atpase, Mycobacterium Tuberculosis
pdb|3FP9|E Chain E, Crystal Structure Of Intern Domain Of
Proteasome-Associated Atpase, Mycobacterium Tuberculosis
pdb|3FP9|F Chain F, Crystal Structure Of Intern Domain Of
Proteasome-Associated Atpase, Mycobacterium Tuberculosis
pdb|3FP9|G Chain G, Crystal Structure Of Intern Domain Of
Proteasome-Associated Atpase, Mycobacterium Tuberculosis
pdb|3FP9|H Chain H, Crystal Structure Of Intern Domain Of
Proteasome-Associated Atpase, Mycobacterium Tuberculosis
pdb|3FP9|I Chain I, Crystal Structure Of Intern Domain Of
Proteasome-Associated Atpase, Mycobacterium Tuberculosis
pdb|3FP9|J Chain J, Crystal Structure Of Intern Domain Of
Proteasome-Associated Atpase, Mycobacterium Tuberculosis
pdb|3FP9|K Chain K, Crystal Structure Of Intern Domain Of
Proteasome-Associated Atpase, Mycobacterium Tuberculosis
pdb|3FP9|L Chain L, Crystal Structure Of Intern Domain Of
Proteasome-Associated Atpase, Mycobacterium Tuberculosis
Length = 153
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 245 CDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFD 296
D ER++WL D +LP L + KL D LL + + G AF+
Sbjct: 84 ADEERVVWLADPLIAEDLPDGLPEALNDDTRPRKLRPGDSLLVDTKAGYAFE 135
>pdb|3NAB|H Chain H, Crystal Structure Of Fab15 Mut6
Length = 222
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 275 QWSKLAESDQLL----RELRKGR--AFDGWSEGTLI 304
QWS L SD + REL +G FD W +GTL+
Sbjct: 82 QWSSLKASDTAMYYCARELYQGYMDTFDSWGQGTLV 117
>pdb|3NA9|H Chain H, Crystal Structure Of Fab15
pdb|3ULU|H Chain H, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|H Chain H, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 225
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 275 QWSKLAESDQLL----RELRKGR--AFDGWSEGTLI 304
QWS L SD + REL +G FD W +GTL+
Sbjct: 82 QWSSLKASDTAMYYCARELYQGYMDTFDSWGQGTLV 117
>pdb|3M9B|A Chain A, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|B Chain B, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|C Chain C, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|D Chain D, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|E Chain E, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|F Chain F, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|G Chain G, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|H Chain H, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|I Chain I, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|J Chain J, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|K Chain K, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|L Chain L, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9D|A Chain A, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled Coil
Domain And The Inter Domain
pdb|3M9D|B Chain B, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled Coil
Domain And The Inter Domain
pdb|3M9D|C Chain C, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled Coil
Domain And The Inter Domain
pdb|3M9D|D Chain D, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled Coil
Domain And The Inter Domain
pdb|3M9D|E Chain E, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled Coil
Domain And The Inter Domain
pdb|3M9D|F Chain F, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled Coil
Domain And The Inter Domain
pdb|3M9D|J Chain J, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled Coil
Domain And The Inter Domain
pdb|3M9D|K Chain K, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled Coil
Domain And The Inter Domain
pdb|3M9D|L Chain L, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled Coil
Domain And The Inter Domain
pdb|3M9D|M Chain M, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled Coil
Domain And The Inter Domain
pdb|3M9D|N Chain N, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled Coil
Domain And The Inter Domain
pdb|3M9D|O Chain O, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal
Atpase Mpa Which Includes The Amino Terminal Coiled Coil
Domain And The Inter Domain
Length = 251
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 245 CDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFD 296
D ER++WL D +LP L + KL D LL + + G AF+
Sbjct: 180 ADEERVVWLADPLIAEDLPDGLPEALNDDTRPRKLRPGDSLLVDTKAGYAFE 231
>pdb|3NAC|H Chain H, Crystal Structure Of Fab15 Mut7
Length = 225
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 275 QWSKLAESDQLL----RELRKGR--AFDGWSEGTLI 304
QWS L SD + R+L +G FD W +GTL+
Sbjct: 82 QWSSLKASDTAMYYCARQLYQGYMDTFDSWGQGTLV 117
>pdb|3NAA|H Chain H, Crystal Structure Of Fab15 Mut5
pdb|3NCJ|H Chain H, Crystal Structure Of Fab15 Mut8
Length = 225
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 275 QWSKLAESDQLL----RELRKGR--AFDGWSEGTLI 304
QWS L SD + R+L +G FD W +GTL+
Sbjct: 82 QWSSLKASDTAMYYCARQLYQGYMDTFDSWGQGTLV 117
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 71 GLSWPEPPLNLLTQKVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDD----------MSS 120
G W PP+NL P L ++S + N RYS P D +S
Sbjct: 1 GSDWVIPPINLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISG 60
Query: 121 ELALLAEIDIETLMKRKRRSSYVRMVSKQM 150
+L++ +D E + + R+ V + Q+
Sbjct: 61 QLSVTKPLDRELIARFHLRAHAVDINGNQV 90
>pdb|1CNT|1 Chain 1, Ciliary Neurotrophic Factor
pdb|1CNT|2 Chain 2, Ciliary Neurotrophic Factor
pdb|1CNT|3 Chain 3, Ciliary Neurotrophic Factor
pdb|1CNT|4 Chain 4, Ciliary Neurotrophic Factor
Length = 187
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 256 LNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAF 295
LN INL + S QWS+L E+++L L+ R F
Sbjct: 44 LNKNINLDSADGMPVASTDQWSELTEAERLQENLQAYRTF 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,939,896
Number of Sequences: 62578
Number of extensions: 487236
Number of successful extensions: 1219
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 15
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)