Query 015155
Match_columns 412
No_of_seqs 217 out of 1029
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 07:39:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 9.9E-75 3.4E-79 574.0 28.0 231 139-374 76-308 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 7.8E-71 2.7E-75 546.8 25.2 229 139-370 78-314 (316)
3 2xsw_A 72 kDa inositol polypho 100.0 5.5E-66 1.9E-70 519.6 25.7 230 139-373 84-326 (357)
4 1i9z_A Synaptojanin, phosphati 100.0 2.1E-64 7.2E-69 506.2 27.4 232 138-381 98-329 (347)
5 2imq_X Salivary nitrophorin; f 100.0 1.3E-53 4.5E-58 414.0 18.8 206 140-369 71-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 98.9 1.6E-08 5.4E-13 91.1 14.9 65 181-258 97-161 (256)
7 3teb_A Endonuclease/exonucleas 98.9 3.3E-08 1.1E-12 90.6 14.8 62 183-260 120-181 (266)
8 4fva_A 5'-tyrosyl-DNA phosphod 98.8 4.1E-08 1.4E-12 88.6 11.6 102 142-259 68-169 (256)
9 1zwx_A SMCL, sphingomyelinase- 98.7 9.8E-08 3.3E-12 89.8 13.6 69 183-260 128-200 (301)
10 4f1h_A Tyrosyl-DNA phosphodies 98.7 1.2E-07 4E-12 83.7 10.5 62 184-258 94-155 (250)
11 3i41_A Beta-hemolysin; beta to 98.5 3.9E-07 1.3E-11 88.2 11.6 70 182-260 146-219 (317)
12 3g6s_A Putative endonuclease/e 98.5 3.7E-07 1.3E-11 84.5 10.8 139 184-367 114-260 (267)
13 3l1w_A Uncharacterized protein 98.5 5.8E-07 2E-11 82.6 11.8 168 151-368 70-252 (257)
14 4gew_A 5'-tyrosyl-DNA phosphod 98.5 5.9E-07 2E-11 89.4 11.5 105 139-259 171-275 (362)
15 1ako_A Exonuclease III; AP-end 98.4 1.3E-06 4.3E-11 80.1 11.6 67 184-260 87-156 (268)
16 2ddr_A Sphingomyelin phosphodi 98.4 1.7E-06 5.8E-11 81.3 12.7 69 183-260 128-200 (306)
17 3mpr_A Putative endonuclease/e 98.3 3.5E-06 1.2E-10 80.1 11.5 62 184-258 118-181 (298)
18 1vyb_A ORF2 contains A reverse 97.8 0.00017 5.8E-09 64.5 12.2 53 188-259 97-149 (238)
19 1wdu_A TRAS1 ORF2P; four-layer 97.7 8.1E-05 2.8E-09 68.2 8.2 58 184-259 101-158 (245)
20 2jc4_A Exodeoxyribonuclease II 97.7 0.00011 3.9E-09 66.5 8.2 53 199-261 98-152 (256)
21 2o3h_A DNA-(apurinic or apyrim 97.5 0.00012 4E-09 68.3 5.5 34 333-366 249-284 (285)
22 2jc5_A Exodeoxyribonuclease; h 97.3 6.5E-05 2.2E-09 68.2 2.2 37 332-368 219-257 (259)
23 4b8c_D Glucose-repressible alc 97.2 8.3E-05 2.9E-09 80.2 1.7 74 196-274 545-619 (727)
24 2a40_B Deoxyribonuclease-1; WA 97.1 0.00045 1.6E-08 64.1 5.8 104 138-260 59-173 (260)
25 1hd7_A DNA-(apurinic or apyrim 97.1 0.00032 1.1E-08 67.3 4.8 34 333-366 282-317 (318)
26 2j63_A AP-endonuclease; base e 97.1 0.0024 8.2E-08 66.1 11.5 34 333-366 430-465 (467)
27 3g91_A MTH0212, exodeoxyribonu 96.8 0.0013 4.4E-08 60.8 5.8 34 333-366 221-256 (265)
28 2voa_A AF_EXO, XTHA, exodeoxyr 96.8 0.0031 1.1E-07 57.2 7.9 34 333-366 217-256 (257)
29 2ei9_A Non-LTR retrotransposon 96.3 0.022 7.4E-07 53.0 10.4 56 185-260 77-132 (240)
30 1sr4_B CDT B, cytolethal diste 96.0 0.018 6E-07 55.7 8.3 60 185-258 121-180 (261)
31 3ngq_A CCR4-NOT transcription 91.6 0.27 9.4E-06 49.7 6.8 73 198-275 195-270 (398)
32 2f1n_A CDT B, cytolethal diste 76.6 2.3 7.9E-05 41.0 4.6 60 184-258 129-188 (262)
33 2yka_B ORF57 protein, 52 kDa i 36.5 11 0.00037 23.7 0.0 11 327-337 6-16 (26)
34 3pt1_A UPF0364 protein YMR027W 22.9 15 0.00053 38.0 -0.5 15 245-259 375-389 (471)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=9.9e-75 Score=574.02 Aligned_cols=231 Identities=37% Similarity=0.676 Sum_probs=217.6
Q ss_pred CCCeEEEEeeehheeeeeeeEecccccccceeeEeEEeeccccccCCeeEEEEEEEECCEEEEEEeeccCCCCCCcchhH
Q 015155 139 RSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELK 218 (412)
Q Consensus 139 ~~~Yv~v~s~qmvGi~L~Vfvr~~l~~~Is~v~~~~V~tG~~G~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~ 218 (412)
+..|++|.+.||+||+|+||||+++.++|++|++++||||++|++||||||+|||.+++++|||||||||||+++ .++
T Consensus 76 ~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~--~~~ 153 (313)
T 3mtc_A 76 DAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE--YER 153 (313)
T ss_dssp TSCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGG--HHH
T ss_pred CCCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchH--HHH
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999875 589
Q ss_pred HhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCcccC-CChHHHHHHHhhhcHHHHHhhhHHHHHHHcCCCccc
Q 015155 219 RNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN-LPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDG 297 (412)
Q Consensus 219 Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNyRI~-l~~~~v~~lI~~~~~~~Ll~~DQL~~e~~~g~~F~g 297 (412)
||+|+.+|++++.|........|..|.+||+|||+|||||||+ ++.++++++|++++|+.|+++|||+.++++|.+|.|
T Consensus 154 Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~g 233 (313)
T 3mtc_A 154 RNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEG 233 (313)
T ss_dssp HHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTT
T ss_pred HHHHHHHHHHhcccCCCCCccCCccccCCceEEEeccccccccCCCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCccCC
Confidence 9999999999999975433334668899999999999999996 889999999999999999999999999999999999
Q ss_pred ccccCcccCCCccccCCCccccCCCCCCCCCCCccccceeecCCCeeEeeeec-cccccCCCCcceeEEEEEEEeeCh
Q 015155 298 WSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYGKGMRLLNYRR-NEIKMSDHRPVTATYMAEVEVFSP 374 (412)
Q Consensus 298 f~E~~I~FpPTYKy~~gs~~Y~~~d~~~k~R~PSWcDRIL~~~~~i~~l~Y~s-~el~~SDHrPV~A~f~v~v~v~~~ 374 (412)
|.|++|+|||||||++|++.|+ +++|+|+|||||||||++++++++.|.+ +++.+||||||+|.|.+++.|+.+
T Consensus 234 f~E~~I~F~PTYKyd~~s~~yd---ts~k~R~PsWcDRIL~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~~~ 308 (313)
T 3mtc_A 234 FTEGELTFQPTYKYDTGSDDWD---TSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRVVAH 308 (313)
T ss_dssp CBCCCCCSCCCBCBCTTSSSBC---CSTTCCCCBCCEEEEEEESSEEEEEEEECTTCCSSSSCCEEEEEEEEEEEECC
T ss_pred cccCCcCcCCCccCcCCCcccc---cccCEecccccceEEEecCCeEEEeeeeccCccCCCccCeEEEEEEEEEEeec
Confidence 9999999999999999999996 5779999999999999999999999998 689999999999999999998875
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=7.8e-71 Score=546.85 Aligned_cols=229 Identities=32% Similarity=0.506 Sum_probs=196.5
Q ss_pred CCCeEEEEeeehheeeeeeeEecccccccceeeEeEEeeccccccCCeeEEEEEEEECCEEEEEEeeccCCCCCCcchhH
Q 015155 139 RSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELK 218 (412)
Q Consensus 139 ~~~Yv~v~s~qmvGi~L~Vfvr~~l~~~Is~v~~~~V~tG~~G~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~ 218 (412)
...|++|.++||+||+|+||||+++.++|++|++++||||++|++||||||+|+|.+++++||||||||+||+++ .++
T Consensus 78 ~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~--~~~ 155 (316)
T 4a9c_A 78 DLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK--TAR 155 (316)
T ss_dssp SCCCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTC--HHH
T ss_pred CCCEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchH--HHH
Confidence 467999999999999999999999999999999999999999999999999999999999999999999999875 589
Q ss_pred HhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCcccCCChHHHHHHHhhhcHHHHHhhhHHHHHHHcCCCcccc
Q 015155 219 RNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGW 298 (412)
Q Consensus 219 Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNyRI~l~~~~v~~lI~~~~~~~Ll~~DQL~~e~~~g~~F~gf 298 (412)
||+|+.+|++++.|.... ......+.+||||||+|||||||+++.++++++|++++|+.||++|||+.|+++|++|.||
T Consensus 156 Rn~d~~~I~~~l~f~~~~-~~~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf 234 (316)
T 4a9c_A 156 RNQNYLDILRLLSLGDRQ-LNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRF 234 (316)
T ss_dssp HHHHHHHHHHHCCC--------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTC
T ss_pred HHHHHHHHHHhCCCCCCC-cCccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcccHHHHhccChHHHHHhcCCccccc
Confidence 999999999999885311 1111223578999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCccccCCCc-cccCC---CCCCCCCCCccccceeecCC---CeeEeeeec-cccccCCCCcceeEEEEEEE
Q 015155 299 SEGTLIFAPTYKYELNSE-KYYGE---DPKVGRRNPSWCDRILSYGK---GMRLLNYRR-NEIKMSDHRPVTATYMAEVE 370 (412)
Q Consensus 299 ~E~~I~FpPTYKy~~gs~-~Y~~~---d~~~k~R~PSWcDRIL~~~~---~i~~l~Y~s-~el~~SDHrPV~A~f~v~v~ 370 (412)
.|++|+|||||||++|++ .|+++ +++.|+|+|||||||||++. .++++.|.+ +++.+||||||+|.|.++|.
T Consensus 235 ~E~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 235 SEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp BCCCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred ccCCcccCCCccccCCCcccccccccccccccccCCcccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 999999999999999995 56543 13456899999999999974 588999997 79999999999999988873
No 3
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=5.5e-66 Score=519.58 Aligned_cols=230 Identities=27% Similarity=0.476 Sum_probs=208.2
Q ss_pred CCCeEEEEeeehheeeeeeeEecccccccceeeEeEEeeccccccCCeeEEEEEEEECCEEEEEEeeccCCCCCCcchhH
Q 015155 139 RSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELK 218 (412)
Q Consensus 139 ~~~Yv~v~s~qmvGi~L~Vfvr~~l~~~Is~v~~~~V~tG~~G~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~ 218 (412)
++.|+++.+.+|+|++|+||+|+++.++|+++++++|+||++|.+||||||+|+|.+++++||||||||+||+++ .++
T Consensus 84 ~~~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~--~~~ 161 (357)
T 2xsw_A 84 GPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK--VAE 161 (357)
T ss_dssp CTTEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC--HHH
T ss_pred CCcccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCch--HHH
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999875 579
Q ss_pred HhHHHHHHHHhcCCCCCCCCCC------CcccCccceEEEeCccCcccCCChHHHHHHHh---hhcHHHHHhhhHHHHHH
Q 015155 219 RNADVHEIHRRTHFRSHSEIGF------PKSICDHERIIWLGDLNYRINLPYEKTRELIS---KKQWSKLAESDQLLREL 289 (412)
Q Consensus 219 Rn~d~~~I~~~~~F~~~~~~~~------p~~I~d~d~vfw~GDLNyRI~l~~~~v~~lI~---~~~~~~Ll~~DQL~~e~ 289 (412)
||+|+.+|++++.|........ ...+.+||++||+|||||||+++++++.+++. .++|+.|+++|||+.++
T Consensus 162 Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~ 241 (357)
T 2xsw_A 162 RLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREM 241 (357)
T ss_dssp HHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCCHHHHHTTBHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccchHHHHHHHhhcchhhHHHHHhcChhHHHH
Confidence 9999999999998853211111 11245789999999999999999999999986 47899999999999999
Q ss_pred HcCCCcccccccCcccCCCccccCCCccccCCCCCCCCCCCccccceeecCC---CeeEeeeec-cccccCCCCcceeEE
Q 015155 290 RKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYGK---GMRLLNYRR-NEIKMSDHRPVTATY 365 (412)
Q Consensus 290 ~~g~~F~gf~E~~I~FpPTYKy~~gs~~Y~~~d~~~k~R~PSWcDRIL~~~~---~i~~l~Y~s-~el~~SDHrPV~A~f 365 (412)
++|++|.||.|++|+|||||||+.|++.|+ +++|+|+|||||||||++. .++++.|.+ +++++||||||+|.|
T Consensus 242 ~~g~~F~gf~E~~I~F~PTYKy~~~t~~Yd---ts~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f 318 (357)
T 2xsw_A 242 RKGSIFKGFQEPDIHFLPSYKFDIGKDTYD---STSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLF 318 (357)
T ss_dssp HHTSSSTTCBCCCCCSCCCBCBCTTSSSBC---CSTTCCCCBCCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEE
T ss_pred hccccccCccccCCCCCCCccccCCCcccc---ccCCCCCCcccceEEEecCCCCceEEEEeEecccccCCCcCCceeEE
Confidence 999999999999999999999999999996 5679999999999999963 689999998 789999999999999
Q ss_pred EEEEEeeC
Q 015155 366 MAEVEVFS 373 (412)
Q Consensus 366 ~v~v~v~~ 373 (412)
.+.|+...
T Consensus 319 ~v~v~~~~ 326 (357)
T 2xsw_A 319 RVKVRPGR 326 (357)
T ss_dssp EEECCCCC
T ss_pred EEEEecCC
Confidence 99987544
No 4
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=2.1e-64 Score=506.17 Aligned_cols=232 Identities=34% Similarity=0.583 Sum_probs=214.2
Q ss_pred CCCCeEEEEeeehheeeeeeeEecccccccceeeEeEEeeccccccCCeeEEEEEEEECCEEEEEEeeccCCCCCCcchh
Q 015155 138 RRSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDEL 217 (412)
Q Consensus 138 ~~~~Yv~v~s~qmvGi~L~Vfvr~~l~~~Is~v~~~~V~tG~~G~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~ 217 (412)
.+..|+++.+.||+|++|+||+|+++.++|++|++++|+||++|.+||||||+++|.+++++||||||||+||+++ .+
T Consensus 98 ~~~~Y~~v~s~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~--~~ 175 (347)
T 1i9z_A 98 SGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN--YD 175 (347)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC--HH
T ss_pred CCCceeEEEEeeccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCcc--HH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999875 46
Q ss_pred HHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCcccCCChHHHHHHHhhhcHHHHHhhhHHHHHHHcCCCccc
Q 015155 218 KRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDG 297 (412)
Q Consensus 218 ~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNyRI~l~~~~v~~lI~~~~~~~Ll~~DQL~~e~~~g~~F~g 297 (412)
+||+|+.+|++++.|.. +..|.+||++||+||||||++++.+.+.++|++++|+.|+++|||+.++++|++|.|
T Consensus 176 ~R~~d~~~I~~~l~f~~------~~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~ 249 (347)
T 1i9z_A 176 ERDHDYRTIASGLRFRR------GRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPF 249 (347)
T ss_dssp HHHHHHHHHHHHCCCGG------GCCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHhhccCc------ccccccCccEEEecccccccCCCHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccc
Confidence 89999999999988852 235778999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccCCCccccCCCccccCCCCCCCCCCCccccceeecCCCeeEeeeeccccccCCCCcceeEEEEEEEeeChhhh
Q 015155 298 WSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEVEVFSPRKL 377 (412)
Q Consensus 298 f~E~~I~FpPTYKy~~gs~~Y~~~d~~~k~R~PSWcDRIL~~~~~i~~l~Y~s~el~~SDHrPV~A~f~v~v~v~~~~kl 377 (412)
|.|++|+|+|||||+.+++.|+ +++++|+|||||||||++ .++++.|.+.++.+||||||+|.|.+.|+++++++.
T Consensus 250 f~E~~i~F~PTYK~~~~~~~yd---~s~k~R~PsWcDRIL~~~-~l~~~~Y~~~~~~~SDH~PV~a~f~~~v~~~~~~~~ 325 (347)
T 1i9z_A 250 FSELPITFPPTYKFDIGTDIYD---TSDKHRVPAWTDRILYRG-ELVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKK 325 (347)
T ss_dssp CBCCCCCSCCCBCBCTTSSCBC---CSTTCCCCBCCEEEEEES-SCEEEEEEECCCCSSSBCCEEEEEEEEEEEECHHHH
T ss_pred cccCCCCCCCCcccCCCCcccc---ccccccCCcccceEEEeC-CEEEEEEEecCccCCCcCCceeEEEEEEecCCHHHH
Confidence 9999999999999999999996 567899999999999998 899999999779999999999999999999999887
Q ss_pred hhhc
Q 015155 378 QRAL 381 (412)
Q Consensus 378 ~r~l 381 (412)
++..
T Consensus 326 ~~~~ 329 (347)
T 1i9z_A 326 KILF 329 (347)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=1.3e-53 Score=413.99 Aligned_cols=206 Identities=22% Similarity=0.428 Sum_probs=186.3
Q ss_pred CCeEEEEe--eehheeeeeeeEecccccccceeeEeEEeeccccccCCeeEEEEEEEECCEEEEEEeeccCCCCCCcchh
Q 015155 140 SSYVRMVS--KQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDEL 217 (412)
Q Consensus 140 ~~Yv~v~s--~qmvGi~L~Vfvr~~l~~~Is~v~~~~V~tG~~G~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~ 217 (412)
..|+++.+ .+|+|++++||+|.++.+.|+++.+ +|++|.+||||||+++|.+++++||||||||+|++.+ .+
T Consensus 71 ~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~--~~ 144 (282)
T 2imq_X 71 KGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVT--ST 144 (282)
T ss_dssp TTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCC--TT
T ss_pred CceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCch--HH
Confidence 57999999 8999999999999999888887765 4667889999999999999999999999999999654 35
Q ss_pred HHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCcccCCChHHHHHHHhhhcHHHHHhhhHHHHHHHcCCCccc
Q 015155 218 KRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDG 297 (412)
Q Consensus 218 ~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNyRI~l~~~~v~~lI~~~~~~~Ll~~DQL~~e~~~g~~F~g 297 (412)
+|++|++.|++++.+ +.+++++||+||||||++.+.+++.++|++++|..|+++|||..+++ +.+|.|
T Consensus 145 ~R~~~~~~I~~~~~~-----------~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~ 212 (282)
T 2imq_X 145 NTKYAYDTRLDYSKK-----------DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKE-QKLFDG 212 (282)
T ss_dssp SSSSSCCGGGCTTSS-----------SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTSSTT
T ss_pred HHHHHHHHHHHhhhc-----------cCccceEEEecccccccCCCHHHHHHHHhhccHHHHhhhhHHHHhhc-cccccc
Confidence 799999999876432 34678999999999999999999999999999999999999999999 999999
Q ss_pred ccccCcccCCCccccCCCccccCCCCCCCCCCCccccceeecC---CCeeEeeeecc-ccccCCCCcceeEEEEEE
Q 015155 298 WSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYG---KGMRLLNYRRN-EIKMSDHRPVTATYMAEV 369 (412)
Q Consensus 298 f~E~~I~FpPTYKy~~gs~~Y~~~d~~~k~R~PSWcDRIL~~~---~~i~~l~Y~s~-el~~SDHrPV~A~f~v~v 369 (412)
|.|++|+|+|||||+.++++|+ .+|+|||||||||++ ..++++.|.+. ++..|||+||+|.|.+++
T Consensus 213 f~e~~i~f~PTYk~~~~~~~y~------~~R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 213 WTEPQVTFKPTYKFKPNTDEYD------LSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp CBCCCCCSCCCBCBCTTSSCBC------TTSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred cccCCcCCCCCccccCCCcccc------ccCCccccceEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 9999999999999999999996 369999999999996 46899999985 899999999999998763
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=98.94 E-value=1.6e-08 Score=91.11 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=48.6
Q ss_pred cccCCeeEEEEEEEECCEEEEEEeeccCCCCCCcchhHHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCc
Q 015155 181 GFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 258 (412)
Q Consensus 181 G~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNy 258 (412)
+....++.+.+.+.+.+..+.++|+||.++... ...|.+++..|++.+.-. .....+|++||||.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~l~~~-----------~~~~pvIl~GDfN~ 161 (256)
T 4gz1_A 97 NTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH--SAERIRQLKTVLGKMQEA-----------PDSTTVIFAGDTNL 161 (256)
T ss_dssp TCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHHS-----------CTTSEEEEEEECCC
T ss_pred cccccceEEEEEEEeCCEEEEEEeecccccccc--hhhhhHHHHHHhhhhhhc-----------cCcceEEEeCccCC
Confidence 445668899999999999999999999987643 356778888887653211 11245899999997
No 7
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=98.88 E-value=3.3e-08 Score=90.56 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=48.6
Q ss_pred cCCeeEEEEEEEECCEEEEEEeeccCCCCCCcchhHHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCccc
Q 015155 183 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 260 (412)
Q Consensus 183 ~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNyRI 260 (412)
+..+|++.+++.+.+..+.++|+||.+..... ..|..++..|++.+. . ...+|++||||-.-
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~--~~r~~q~~~l~~~~~-----~---------~~~~il~GDfN~~~ 181 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCET--EDMGKNIQTILNRTQ-----N---------SNLKILMGDFNTDA 181 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCTT--CCHHHHHHHHHTSSC-----S---------CCEEEEEEECCCCT
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCCh--HHHHHHHHHHHHHHh-----c---------CCcEEEEeECCCCC
Confidence 45699999999999999999999999875322 368889998876421 0 35699999999854
No 8
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=98.77 E-value=4.1e-08 Score=88.61 Aligned_cols=102 Identities=16% Similarity=0.084 Sum_probs=60.4
Q ss_pred eEEEEeeehheeeeeeeEecccccccceeeEeEEeeccccccCCeeEEEEEEEECCEEEEEEeeccCCCCCCcchhHHhH
Q 015155 142 YVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNA 221 (412)
Q Consensus 142 Yv~v~s~qmvGi~L~Vfvr~~l~~~Is~v~~~~V~tG~~G~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~ 221 (412)
|.......-.+-...+++++.+. ......+. +.+..+..+.+.+.+.+.+..+.++|+||.+.... ...|..
T Consensus 68 ~~~~~~~~~~~~g~~il~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--~~~~~~ 139 (256)
T 4fva_A 68 YKIYYSNKGCQYYTAILVSKMFD----VEKHDVIH--FQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCA 139 (256)
T ss_dssp EEEEESSTTSSSEEEEEEETTCE----EEEEEEEE--CTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHH
T ss_pred ceEeecCCCCCcceEEEEeeccc----ceeccccc--CCCCcccceeEEEEEEeCCeEEEEEEecCCCCCcc--hHHHHH
Confidence 43344444444455666666432 22222222 22334567888999999999999999999987543 345666
Q ss_pred HHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCcc
Q 015155 222 DVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 259 (412)
Q Consensus 222 d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNyR 259 (412)
++..+...+.... .......+|++||||.+
T Consensus 140 q~~~~~~~~~~~~--------~~~~~~~vIl~GDfN~~ 169 (256)
T 4fva_A 140 QFGFCMDKVREII--------AQNPGALVFFGGDLNLR 169 (256)
T ss_dssp HHHHHHHHHHHHH--------HHSTTCEEEEEEECCCC
T ss_pred HHHHHHHHhhhhh--------hccCCCcEEEeccCCCC
Confidence 6666654321100 00122459999999974
No 9
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.74 E-value=9.8e-08 Score=89.81 Aligned_cols=69 Identities=22% Similarity=0.289 Sum_probs=49.5
Q ss_pred cCCeeEEEEEEEECCEEEEEEeeccCCCCCC----cchhHHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCc
Q 015155 183 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 258 (412)
Q Consensus 183 ~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~----~~~~~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNy 258 (412)
..++|++.+.+.+.+..+.++|+||.+.... .....|.+++..|.+.+.=. ..+ ....+|++||||-
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~~~----~~~pvIl~GDfN~ 198 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKK-----NIP----KDEIIFIGGDLNV 198 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-----TCC----TTSEEEEEEECCC
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHh-----CCC----CCCeEEEEeeCCC
Confidence 4579999999999999999999999987532 12456888888877643200 001 2246999999998
Q ss_pred cc
Q 015155 259 RI 260 (412)
Q Consensus 259 RI 260 (412)
.-
T Consensus 199 ~~ 200 (301)
T 1zwx_A 199 NY 200 (301)
T ss_dssp CT
T ss_pred CC
Confidence 44
No 10
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=98.66 E-value=1.2e-07 Score=83.72 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=46.1
Q ss_pred CCeeEEEEEEEECCEEEEEEeeccCCCCCCcchhHHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCc
Q 015155 184 GNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 258 (412)
Q Consensus 184 GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNy 258 (412)
...+.+.+.+.+.+..+.++++||.+.... ...|.+++..|++.+.=. .....+|++||||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~--~~~r~~q~~~~~~~l~~~-----------~~~~pvIl~GDfN~ 155 (250)
T 4f1h_A 94 MMRNLLIAQVTFSGQKLYLMTSHLESCKNQ--SQERTKQLRVVLQKIKEA-----------PEDAIVIFAGDTNL 155 (250)
T ss_dssp SCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHHS-----------CTTEEEEEEEECCC
T ss_pred ccceEEEEEEecCCcEEEEecccccccccc--HHHHHHHHHHHHHHHHhc-----------CCCCCEEEEEecCC
Confidence 446778889999999999999999987543 356788888887653210 12245899999996
No 11
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.54 E-value=3.9e-07 Score=88.17 Aligned_cols=70 Identities=23% Similarity=0.238 Sum_probs=50.9
Q ss_pred ccCCeeEEEEEEEECCEEEEEEeeccCCCCCC----cchhHHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccC
Q 015155 182 FIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLN 257 (412)
Q Consensus 182 ~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~----~~~~~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLN 257 (412)
...+||.+.+.+.+.+..+.++|+||.+.... .....|.+++..|.+.+.-. ..+ ....+|++||||
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~~~----~~~pvIl~GDfN 216 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK-----NIP----KDETVYIGGDLN 216 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH-----TCC----TTSCEEEEEECC
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh-----ccC----CCCeEEEEeECC
Confidence 35789999999999999999999999986531 13467889988887643210 011 123489999999
Q ss_pred ccc
Q 015155 258 YRI 260 (412)
Q Consensus 258 yRI 260 (412)
-.-
T Consensus 217 ~~~ 219 (317)
T 3i41_A 217 VNK 219 (317)
T ss_dssp CCT
T ss_pred CCC
Confidence 843
No 12
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.54 E-value=3.7e-07 Score=84.50 Aligned_cols=139 Identities=15% Similarity=0.106 Sum_probs=78.5
Q ss_pred CCeeEEEEEEEE--CCEEEEEEeeccCCCCCCcchhHHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCcccC
Q 015155 184 GNKGSVSVSMSI--HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 261 (412)
Q Consensus 184 GNKGaV~vr~~i--~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNyRI~ 261 (412)
.+++++.+.+.. .+..++++|+||.+.. ...|.+++..|.+.+.=. .....+|++||||-
T Consensus 114 ~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~~~-----------~~~~pvIl~GDfN~--- 175 (267)
T 3g6s_A 114 CVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIKEI-----------VGERPAVVTGDFNV--- 175 (267)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHHH-----------TTTSCEEEEEECSS---
T ss_pred CcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHHh-----------cCCCCEEEEeECCC---
Confidence 467899999985 5789999999998754 357888887776643210 01234899999997
Q ss_pred CChHHHHHHHhhhcHHHHHhhhHHHHHHHcCCCcccccccCcc--cCCCccccCCCccccCCCCCCCCCCCccccceeec
Q 015155 262 LPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLI--FAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSY 339 (412)
Q Consensus 262 l~~~~v~~lI~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~I~--FpPTYKy~~gs~~Y~~~d~~~k~R~PSWcDRIL~~ 339 (412)
.+.+.+.+.+..... ..-..|.+.... ..+||........ ....| .|+||..
T Consensus 176 ~~~~~~~~~l~~~~~----------------~l~d~~~~~~~~~~~~~T~~~~~~~~~------~~~~r----iD~I~~s 229 (267)
T 3g6s_A 176 TDASDAYETITTNEF----------------VMKDAYKTAARVTGVDYTFHDFARIPA------EDCEK----IDFIFVT 229 (267)
T ss_dssp CTTSHHHHHHHSSSS----------------CCEEHHHHCSEEEECSCSBCTTTTSCG------GGCCC----CEEEEEC
T ss_pred CCCCHHHHHhhcCCc----------------chhhhHhhhccccCCCCCEeCCCCCCC------CCCCc----EeEEEeC
Confidence 333333222221100 011112221111 1245532211100 01234 8999997
Q ss_pred CCCeeEeeeecccc----ccCCCCcceeEEEE
Q 015155 340 GKGMRLLNYRRNEI----KMSDHRPVTATYMA 367 (412)
Q Consensus 340 ~~~i~~l~Y~s~el----~~SDHrPV~A~f~v 367 (412)
+. +++..+..... ..|||.||.|....
T Consensus 230 ~~-~~~~~~~v~~~~~~~~~SDH~PV~a~~~~ 260 (267)
T 3g6s_A 230 PQ-VLVKSCEIPAEVPEALLSDHNPQLADLEL 260 (267)
T ss_dssp TT-SEEEEEEECCCCSSSCCCSBCCEEEEEEE
T ss_pred CC-ceEEEEEEecCCCCCCCCCcccEEEEEEe
Confidence 53 66666665222 57999999998754
No 13
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.53 E-value=5.8e-07 Score=82.56 Aligned_cols=168 Identities=21% Similarity=0.101 Sum_probs=91.8
Q ss_pred heeeeeeeEecccccccceeeE--e----EEeeccccccCCeeEEEEEEEEC--CEEEEEEeeccCCCCCCcchhHHhHH
Q 015155 151 VGIFLTIWVRRSLRRHIQNVRV--S----TVGVGVMGFIGNKGSVSVSMSIH--QTLFCFVCAHLTSGEKDGDELKRNAD 222 (412)
Q Consensus 151 vGi~L~Vfvr~~l~~~Is~v~~--~----~V~tG~~G~~GNKGaV~vr~~i~--~t~~~FVn~HLaA~~~~~~~~~Rn~d 222 (412)
.|..+.|+.|++..+.+..-.. + ..+.|. +....++++.+.+... +..+.++|+||.+.. ...|..+
T Consensus 70 ~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q 144 (257)
T 3l1w_A 70 QGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHP-EAGCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAG 144 (257)
T ss_dssp CSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCT-TCSSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHH
T ss_pred CCceEEEEEEcceEEEEecCeEECcCCCCcccccc-cccccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHH
Confidence 4556778888664332221111 0 001111 2345788999999884 678999999999863 2578889
Q ss_pred HHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCcccCCChHHHHHHHhhhcHHHHHhhhHHHHHHHcCCCcccccccC
Q 015155 223 VHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGT 302 (412)
Q Consensus 223 ~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNyRI~l~~~~v~~lI~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~ 302 (412)
+..|.+.+.- .+ ..+.+|++||||- .+.+...+.+..+ ...-|....
T Consensus 145 ~~~l~~~i~~----------~~-~~~pvil~GDfN~---~~~~~~~~~l~~~-------------------l~d~~~~~~ 191 (257)
T 3l1w_A 145 MTVILEELHD----------KI-AQYPTLLMGDFNA---ESGEEVHQLVQKK-------------------FQDSKNLAT 191 (257)
T ss_dssp HHHHHHHTHH----------HH-HHSCEEEEEECCC---CTTSHHHHHHTTT-------------------CEEGGGTSE
T ss_pred HHHHHHHHHH----------Hc-CCCCEEEEeeCCC---CCCcHHHHHhhhh-------------------ccchhhhhc
Confidence 9888875320 00 0114999999997 2333332232211 011111110
Q ss_pred -cccCCCccccCCCccccCCCCC-CCCCCCccccceeecCCCeeEeeeecc-----ccccCCCCcceeEEEEE
Q 015155 303 -LIFAPTYKYELNSEKYYGEDPK-VGRRNPSWCDRILSYGKGMRLLNYRRN-----EIKMSDHRPVTATYMAE 368 (412)
Q Consensus 303 -I~FpPTYKy~~gs~~Y~~~d~~-~k~R~PSWcDRIL~~~~~i~~l~Y~s~-----el~~SDHrPV~A~f~v~ 368 (412)
-...+||.-..+. .+. ...| .|+||. .++++..+... ....|||.||.+.|.+.
T Consensus 192 ~~~~~~t~~~~~~~------~~~~~~~r----iD~i~~--~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~~~ 252 (257)
T 3l1w_A 192 HYGPRGTFQNFTYT------KPWAELEE----IDYIYV--KGWQVQQTASLTDSIDGRFPSDHFPLEAEVAGE 252 (257)
T ss_dssp EESCSCCBCTTCTT------CCGGGCBC----CEEEEE--ESEEEEEEEECCCCBTTBCSSSBCCEEEEEEEC
T ss_pred ccCCCCcccCCccc------CCCCCCCc----eeEEEE--CCcEEEEEEEeccCcCCcccCCcceEEEEEEEE
Confidence 0122343211000 000 0134 799999 56777776542 24689999999998753
No 14
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.49 E-value=5.9e-07 Score=89.43 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=64.9
Q ss_pred CCCeEEEEeeehheeeeeeeEecccccccceeeEeEEeeccccccCCeeEEEEEEEECCEEEEEEeeccCCCCCCcchhH
Q 015155 139 RSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELK 218 (412)
Q Consensus 139 ~~~Yv~v~s~qmvGi~L~Vfvr~~l~~~Is~v~~~~V~tG~~G~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~ 218 (412)
...|......+-.+-...|+.|+.+ ..+....... .+.....+++.+.+.+.+..|+++|+||.+.... ...
T Consensus 171 ~~~y~~~~~~~~~~~G~aIlsk~~i----~~~~~~~~~~--~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~--~~~ 242 (362)
T 4gew_A 171 QSLYKIYYSNKGCQYYTAILVSKMF----DVEKHDVIHF--QNSGMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQ 242 (362)
T ss_dssp GGTEEEEESSTTSSSEEEEEEETTE----EEEEEEEEEC--TTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHH
T ss_pred cCCceEEeCCCCCCceEEEEEeccC----ccccccccCC--CCCcccceEEEEEEEECCEEEEEEEecCCccccc--hhH
Confidence 3456666665655666777887643 2222222221 1222346888999999999999999999987542 356
Q ss_pred HhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCcc
Q 015155 219 RNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 259 (412)
Q Consensus 219 Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNyR 259 (412)
|..++..+...+.-... ......+|++||||-+
T Consensus 243 R~~Q~~~l~~~~~~~~~--------~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 243 RCAQFGFCMDKVREIIA--------QNPGALVFFGGDLNLR 275 (362)
T ss_dssp HHHHHHHHHHHHHHHHH--------HCTTCEEEEEEECCCC
T ss_pred HHHHHHHHHHHhHhhhh--------cCCCCCeEEeecCCCC
Confidence 88888777653211000 0112459999999964
No 15
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.44 E-value=1.3e-06 Score=80.06 Aligned_cols=67 Identities=7% Similarity=0.088 Sum_probs=45.4
Q ss_pred CCeeEEEEEEEECCEEEEEEeeccCCCCCCc---chhHHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCccc
Q 015155 184 GNKGSVSVSMSIHQTLFCFVCAHLTSGEKDG---DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 260 (412)
Q Consensus 184 GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~---~~~~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNyRI 260 (412)
.+++++.+++.+.+..++++|+||+++.... ....|.+++..|.+.+.-. . .....+|++||||-..
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~--~--------~~~~~~Il~GDFN~~~ 156 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETE--L--------KRDNPVLIMGDMNISP 156 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHH--C--------CTTSCEEEEEECCCCC
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHh--h--------hCCCCEEEEeECCCCC
Confidence 4578899999998899999999999876421 1234667776665532100 0 0124599999999743
No 16
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.44 E-value=1.7e-06 Score=81.30 Aligned_cols=69 Identities=20% Similarity=0.333 Sum_probs=48.1
Q ss_pred cCCeeEEEEEEEECCEEEEEEeeccCCCCCC----cchhHHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCc
Q 015155 183 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 258 (412)
Q Consensus 183 ~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~----~~~~~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNy 258 (412)
...+|++.+.+.+.+..+.++|+||.+.... .....|.+++..|.+.+.-. ..+ ....+|++||||-
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~~~----~~~pvil~GDfN~ 198 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNK-----NIP----NNEYVLIGGDMNV 198 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHH-----TCC----TTSCEEEEEECCC
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----cCC----CCCEEEEEeeCCC
Confidence 3578999999999999999999999987421 13456888888886543210 001 1235899999998
Q ss_pred cc
Q 015155 259 RI 260 (412)
Q Consensus 259 RI 260 (412)
.-
T Consensus 199 ~~ 200 (306)
T 2ddr_A 199 NK 200 (306)
T ss_dssp CC
T ss_pred Cc
Confidence 55
No 17
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=3.5e-06 Score=80.11 Aligned_cols=62 Identities=13% Similarity=0.026 Sum_probs=43.4
Q ss_pred CCeeEEEEEEE--ECCEEEEEEeeccCCCCCCcchhHHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCc
Q 015155 184 GNKGSVSVSMS--IHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 258 (412)
Q Consensus 184 GNKGaV~vr~~--i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNy 258 (412)
-+++++.+.+. ..+..|+++|+||.+.. ...|.+++..|.+.+.=. .. . ....+|++||||-
T Consensus 118 ~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~~~--~~---~----~~~pvIl~GDfN~ 181 (298)
T 3mpr_A 118 LPRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMKEL--GR---G----KNLPAILTGDFNV 181 (298)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHHT--TT---T----SCCCEEEEEECSS
T ss_pred cCceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHHHH--hc---C----CCCcEEEEEeCCC
Confidence 36788888888 46789999999998643 357888888887643210 00 0 1234899999996
No 18
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=97.83 E-value=0.00017 Score=64.46 Aligned_cols=53 Identities=15% Similarity=0.148 Sum_probs=35.0
Q ss_pred EEEEEEEECCEEEEEEeeccCCCCCCcchhHHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCcc
Q 015155 188 SVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 259 (412)
Q Consensus 188 aV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNyR 259 (412)
.+.+.+.+.+..+.++|+|++++.. .| -+.++.+.+.- . + ...++++||||-.
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~-----~~--~~~~l~~~l~~--~-----~-----~~~~Il~GDFN~~ 149 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGA-----PR--FIKQVLSDLQR--D-----L-----DSHTLIMGDFNTP 149 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSH-----HH--HHHHHHHHTTT--T-----C-----CTTEEEEEECSSC
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCc-----HH--HHHHHHHHHHh--c-----c-----CCCEEEEccCCCC
Confidence 5677888888999999999988642 12 23344443221 0 0 1348999999984
No 19
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=97.70 E-value=8.1e-05 Score=68.21 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=41.4
Q ss_pred CCeeEEEEEEEECCEEEEEEeeccCCCCCCcchhHHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCcc
Q 015155 184 GNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 259 (412)
Q Consensus 184 GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNyR 259 (412)
-..|.+.+.+...+..+.++|+|++++.. ...+.+++..+++.+ . ...++++||||-.
T Consensus 101 ~~~~~~~~~i~~~~~~~~v~~vy~p~~~~---~~~~~~~l~~~~~~~--~-------------~~~~Ii~GDfN~~ 158 (245)
T 1wdu_A 101 TTNNIVVVGIRTRAWEITLVSYYFEPDKP---IESYLEQIKRVERKM--G-------------PKRLIFGGDANAK 158 (245)
T ss_dssp CCSSEEEEEEECSSCEEEEEEEECCTTSC---SHHHHHHHHHHHHTT--C-------------SSSEEEEEECCCC
T ss_pred ccCCEEEEEEEcCCCcEEEEEEEeCCCCC---HHHHHHHHHHHHHHh--C-------------CCcEEEEeccccC
Confidence 35677888888888899999999998753 234555666666531 1 1238999999964
No 20
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=97.65 E-value=0.00011 Score=66.48 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=30.8
Q ss_pred EEEEEeeccCCCCCCc--chhHHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCcccC
Q 015155 199 LFCFVCAHLTSGEKDG--DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 261 (412)
Q Consensus 199 ~~~FVn~HLaA~~~~~--~~~~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNyRI~ 261 (412)
.+.++|+|+++..... ....|.+.+..|.+.+.- . +.....++++||||-..+
T Consensus 98 ~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~--~--------~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 98 GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRD--E--------MTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHH--H--------HTTCSSEEEEEECCCCCS
T ss_pred CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHH--H--------hcCCCCEEEEeECCCCCc
Confidence 6999999999876422 122355555555432210 0 001234899999997543
No 21
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=97.45 E-value=0.00012 Score=68.28 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=23.4
Q ss_pred ccceeecCCCe-eEeeeec-cccccCCCCcceeEEE
Q 015155 333 CDRILSYGKGM-RLLNYRR-NEIKMSDHRPVTATYM 366 (412)
Q Consensus 333 cDRIL~~~~~i-~~l~Y~s-~el~~SDHrPV~A~f~ 366 (412)
.|+||....-. .+..+.. .+...|||.||.+.|.
T Consensus 249 ID~i~~s~~~~~~v~~~~v~~~~~~SDH~pv~~~l~ 284 (285)
T 2o3h_A 249 LDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 284 (285)
T ss_dssp CEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhhheEeeccCCCCCeecEEEEec
Confidence 89999975311 1344443 3456899999999874
No 22
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=97.33 E-value=6.5e-05 Score=68.22 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=25.2
Q ss_pred cccceeecCCCe-eEeeeec-cccccCCCCcceeEEEEE
Q 015155 332 WCDRILSYGKGM-RLLNYRR-NEIKMSDHRPVTATYMAE 368 (412)
Q Consensus 332 WcDRIL~~~~~i-~~l~Y~s-~el~~SDHrPV~A~f~v~ 368 (412)
-.|+||..+.-. ++..+.. .+...|||.||.+.|.+.
T Consensus 219 rID~i~~s~~~~~~~~~~~v~~~~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 219 RIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDYA 257 (259)
T ss_dssp CCEEEEECHHHHTTEEEEEECCSSCCSSBCCEEEEESCC
T ss_pred EEEEEEECHHHHhHHhheeecCCCCCCCcccEEEEEecc
Confidence 389999874211 1344444 357899999999998653
No 23
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.21 E-value=8.3e-05 Score=80.25 Aligned_cols=74 Identities=15% Similarity=0.039 Sum_probs=0.0
Q ss_pred CCEEEEEEeeccCCCCCCcchhHHhHHHHHHHHhcC-CCCCCCCCCCcccCccceEEEeCccCcccCCChHHHHHHHhhh
Q 015155 196 HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKK 274 (412)
Q Consensus 196 ~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~~~~~-F~~~~~~~~p~~I~d~d~vfw~GDLNyRI~l~~~~v~~lI~~~ 274 (412)
.+..|+++|+||.++.... ..|..+...|++.+. +........+..-.....+|++||||- .+.+.+.+++..+
T Consensus 545 ~g~~l~V~ntHL~~~p~~~--~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs---~P~s~~~~~l~~~ 619 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFN--DVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNS---YINSAVYELINTG 619 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCCC--chHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCC---CCCCcceEeeecC
Confidence 3678999999999864322 346666666654421 100000000000011235899999997 4445555555443
No 24
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=97.15 E-value=0.00045 Score=64.12 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=53.1
Q ss_pred CCCCeEEEEeeeh----heeeeeeeEecccccccceeeEeEEeec-c---ccccCCeeEEEEEEEEC---CEEEEEEeec
Q 015155 138 RRSSYVRMVSKQM----VGIFLTIWVRRSLRRHIQNVRVSTVGVG-V---MGFIGNKGSVSVSMSIH---QTLFCFVCAH 206 (412)
Q Consensus 138 ~~~~Yv~v~s~qm----vGi~L~Vfvr~~l~~~Is~v~~~~V~tG-~---~G~~GNKGaV~vr~~i~---~t~~~FVn~H 206 (412)
.+..|..+.+... .|+...++.|++....+.. .....| . ...+ ..+.+.+.|... +..|.++|+|
T Consensus 59 ~~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~~~---~~~~~~~~~~~~~~~-~R~p~~~~~~~~~~~g~~~~vi~~H 134 (260)
T 2a40_B 59 DPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDT---YQYDDGCESCGNDSF-SREPAVVKFSSHSTKVKEFAIVALH 134 (260)
T ss_dssp STTSCEEEECCCBCSSSCCBEEEEEECTTTCEEEEE---EECCTTSTTTHHHHC-SSCCEEEEEECTTSSSSEEEEEECC
T ss_pred cCCCcEEEEcccCCCCCCcEEEEEEEcCceeEecCc---eeccCCCcCCCCCce-eeCCEEEEEEeCCCCCceEEEEEec
Confidence 3566876766543 2455566666664322221 111111 0 0011 255667778765 5789999999
Q ss_pred cCCCCCCcchhHHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCccc
Q 015155 207 LTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 260 (412)
Q Consensus 207 LaA~~~~~~~~~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNyRI 260 (412)
|.+... .++.+.+..+++.+. . ......+|++||||-.-
T Consensus 135 l~~~~~----~~q~~~l~~~~~~~~-~----------~~~~~~vil~GDfN~~~ 173 (260)
T 2a40_B 135 SAPSDA----VAEINSLYDVYLDVQ-Q----------KWHLNDVMLMGDFNADC 173 (260)
T ss_dssp CCGGGH----HHHHHHHHHHHHHHH-H----------HHCCCCEEEEEECCCST
T ss_pred CCCCCc----HHHHHHHHHHHHHHH-H----------hCCCCCEEEEecCCCCC
Confidence 997532 112223333332210 0 00113489999999743
No 25
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=97.13 E-value=0.00032 Score=67.32 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=23.0
Q ss_pred ccceeecCCCe-eEeeeec-cccccCCCCcceeEEE
Q 015155 333 CDRILSYGKGM-RLLNYRR-NEIKMSDHRPVTATYM 366 (412)
Q Consensus 333 cDRIL~~~~~i-~~l~Y~s-~el~~SDHrPV~A~f~ 366 (412)
.|+||....-. .+..+.. .+...|||.||.+.|.
T Consensus 282 ID~il~s~~~~~~v~~~~v~~~~~~SDH~Pv~~~l~ 317 (318)
T 1hd7_A 282 LDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 317 (318)
T ss_dssp CEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhhheEeeccCCCCCccCEEEEec
Confidence 89999975321 1334443 3456899999999874
No 26
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=97.12 E-value=0.0024 Score=66.09 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=23.4
Q ss_pred ccceeecCCC-eeEeeeec-cccccCCCCcceeEEE
Q 015155 333 CDRILSYGKG-MRLLNYRR-NEIKMSDHRPVTATYM 366 (412)
Q Consensus 333 cDRIL~~~~~-i~~l~Y~s-~el~~SDHrPV~A~f~ 366 (412)
.|+||....- .++..+.. .+...|||.||.+.|.
T Consensus 430 IDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l~ 465 (467)
T 2j63_A 430 LDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMR 465 (467)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEE
T ss_pred eEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEEE
Confidence 8999986531 12334433 3567999999999885
No 27
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=96.83 E-value=0.0013 Score=60.76 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=22.9
Q ss_pred ccceeecCCCe-eEeeeec-cccccCCCCcceeEEE
Q 015155 333 CDRILSYGKGM-RLLNYRR-NEIKMSDHRPVTATYM 366 (412)
Q Consensus 333 cDRIL~~~~~i-~~l~Y~s-~el~~SDHrPV~A~f~ 366 (412)
.|+||....-. ++..... .+...|||.||.+.+.
T Consensus 221 ID~il~s~~~~~~~~~~~i~~~~~~SDH~Pv~~~~~ 256 (265)
T 3g91_A 221 LDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEIE 256 (265)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEE
T ss_pred EEEEEECHHHHhhhcEEEEeCCCCCCCcceEEEEhh
Confidence 89999865321 2333333 3467899999999885
No 28
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=96.78 E-value=0.0031 Score=57.20 Aligned_cols=34 Identities=29% Similarity=0.258 Sum_probs=21.6
Q ss_pred ccceeecCCCe-eEeeeec-c----ccccCCCCcceeEEE
Q 015155 333 CDRILSYGKGM-RLLNYRR-N----EIKMSDHRPVTATYM 366 (412)
Q Consensus 333 cDRIL~~~~~i-~~l~Y~s-~----el~~SDHrPV~A~f~ 366 (412)
.|+||..+.-. .+..+.. . ....|||.||.+.|.
T Consensus 217 ID~i~~s~~~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~ 256 (257)
T 2voa_A 217 GDAILATPPLAERCVDCYADIKPRLAEKPSDHLPLVAVFD 256 (257)
T ss_dssp CEEEEECHHHHTTEEEEEECCHHHHSSSCCSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhheeEeehhhccCCCCCCccCEEEEEe
Confidence 89999864211 1333332 1 146899999999874
No 29
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=96.29 E-value=0.022 Score=53.04 Aligned_cols=56 Identities=18% Similarity=0.096 Sum_probs=35.6
Q ss_pred CeeEEEEEEEECCEEEEEEeeccCCCCCCcchhHHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCccc
Q 015155 185 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 260 (412)
Q Consensus 185 NKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNyRI 260 (412)
..|++.+.+.+ ..+.++|+|++.+... ..+.+.+..+.... . + ..++++||||---
T Consensus 77 ~~~~~~i~i~~--~~i~i~svY~P~~~~~---~~~~~~l~~l~~~~--~-----~--------~~~Ii~GDfN~~~ 132 (240)
T 2ei9_A 77 STHITVVHIGG--WDLYMVSAYFQYSDPI---DPYLHRLGNILDRL--R-----G--------ARVVICADTNAHS 132 (240)
T ss_dssp CSSEEEEEETT--TTEEEEEEECCTTSCS---HHHHHHHHHHHHHT--T-----T--------SCEEEEEECCCCC
T ss_pred CCCEEEEEEee--ccEEEEEEEcCCCCch---hHHHHHHHHHHHhc--C-----C--------CcEEEEEeccccc
Confidence 46776766653 5688999999998642 23444455554321 0 1 2389999999643
No 30
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=95.99 E-value=0.018 Score=55.67 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=38.0
Q ss_pred CeeEEEEEEEECCEEEEEEeeccCCCCCCcchhHHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCc
Q 015155 185 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 258 (412)
Q Consensus 185 NKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNy 258 (412)
..|+++++ +.+ +.|++.||.+.... .|.+.+..|... |.... ..|. ..+...+++||||-
T Consensus 121 ~R~~l~i~--i~g--~~f~s~Hl~~~~~~----ea~~~v~~I~~~--~~~~~--~~~~--~~~~~~ii~GDFN~ 180 (261)
T 1sr4_B 121 SRPAVGIR--IGT--DVFFTVHALATGGS----DAVSLIRNIFTT--FNSSS--SPPE--RRVYSWMVVGDFNR 180 (261)
T ss_dssp CCCEEEEE--ETT--EEEEEEECCTTTTT----THHHHHHHHHHH--HHC-----CGG--GGGCEEEEEEECSS
T ss_pred CcceEEEE--ECC--eEEEEeCCCCCCCc----hHHHHHHHHHHH--HHhcc--cCCc--ccCCcEEEEeeCCC
Confidence 67888884 677 99999999998532 366667777653 21100 0010 01245899999995
No 31
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=91.65 E-value=0.27 Score=49.74 Aligned_cols=73 Identities=14% Similarity=0.062 Sum_probs=44.0
Q ss_pred EEEEEEeeccCCCCCCcchhHHhHHHHHHHHhcC-CCCCCCCCCCc--ccCccceEEEeCccCcccCCChHHHHHHHhhh
Q 015155 198 TLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPK--SICDHERIIWLGDLNYRINLPYEKTRELISKK 274 (412)
Q Consensus 198 t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~~~~~-F~~~~~~~~p~--~I~d~d~vfw~GDLNyRI~l~~~~v~~lI~~~ 274 (412)
..|+++|+||..+... ...|..+...|++.+. |........+. .-...-.+|++||||- .+.+.+-+++..+
T Consensus 195 ~~l~V~nTHL~~~p~~--~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs---~P~s~vy~~L~~G 269 (398)
T 3ngq_A 195 QLLIVANAHMHWDPEY--SDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNS---LPDSGVVEYLSNG 269 (398)
T ss_dssp CEEEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSC---CTTSHHHHHHHHT
T ss_pred cEEEEEEeCcCCCCCC--HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCC---CCCCHHHHHHhcC
Confidence 5699999999997543 2468888888776432 11000000000 0001124899999998 7777888888765
Q ss_pred c
Q 015155 275 Q 275 (412)
Q Consensus 275 ~ 275 (412)
.
T Consensus 270 ~ 270 (398)
T 3ngq_A 270 G 270 (398)
T ss_dssp E
T ss_pred C
Confidence 4
No 32
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=76.60 E-value=2.3 Score=41.00 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=39.9
Q ss_pred CCeeEEEEEEEECCEEEEEEeeccCCCCCCcchhHHhHHHHHHHHhcCCCCCCCCCCCcccCccceEEEeCccCc
Q 015155 184 GNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 258 (412)
Q Consensus 184 GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~~~~~F~~~~~~~~p~~I~d~d~vfw~GDLNy 258 (412)
+..+.+++++ . .+.|.+.|+.+..++ .|.+.+..|... |.. .|..+-..--.+++||||-
T Consensus 129 ~~Rp~lgiri--~--~~~ff~tHa~a~~g~----da~a~v~~I~~~--~~~-----~~~~~~~~~pwii~GDFNr 188 (262)
T 2f1n_A 129 GGRPLLGIRI--G--NDAFFTAHAIAMRNN----DAPALVEEVYNF--FRD-----SRDPVHQALNWMILGDFNR 188 (262)
T ss_dssp TCCCEEEEEE--T--TEEEEEEECCSSSSC----SHHHHHHHHHHH--HHT-----CSSHHHHTCEEEEEEECSS
T ss_pred CCCceEEEEE--C--CEEEEEEEecCCCCc----cHHHHHHHHHHH--Hhc-----CcccccCCCcEEEEecCCC
Confidence 3788888887 2 388999999998432 488889988864 321 1110000013899999997
No 33
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=36.46 E-value=11 Score=23.67 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=8.6
Q ss_pred CCCCcccccee
Q 015155 327 RRNPSWCDRIL 337 (412)
Q Consensus 327 ~R~PSWcDRIL 337 (412)
.-.|+|.|||-
T Consensus 6 scr~nWs~RV~ 16 (26)
T 2yka_B 6 SCKTSWADRVR 16 (26)
Confidence 34599999984
No 34
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=22.92 E-value=15 Score=38.03 Aligned_cols=15 Identities=47% Similarity=0.818 Sum_probs=12.6
Q ss_pred CccceEEEeCccCcc
Q 015155 245 CDHERIIWLGDLNYR 259 (412)
Q Consensus 245 ~d~d~vfw~GDLNyR 259 (412)
...+.||+=||||||
T Consensus 375 ~~S~LVIFKGDLNYR 389 (471)
T 3pt1_A 375 QKSNLVIFKGDLNYR 389 (471)
T ss_dssp TTCSEEEEEHHHHHH
T ss_pred hhCcEEEEecchhhh
Confidence 357889999999995
Done!