BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015157
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip
Revealed By Cryo-electron Microscopy
pdb|3J1Z|Q Chain Q, Inward-facing Conformation Of The Zinc Transporter Yiip
Revealed By Cryo-electron Microscopy
Length = 306
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 123/279 (44%), Gaps = 30/279 (10%)
Query: 128 LLAFKIYATIQSGSLAIAASTLDSLLDLMAGGI--LWITHLSMKNINIYKYPIGKLRMQP 185
L+ K+ A + SGS ++ AS DS D +A I + I + + + ++Y GK +P
Sbjct: 25 LITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGK--AEP 82
Query: 186 VGIIIFAAVMATLGFQVLVQAVEQLIKDEPSEKMT------------SLQLIWLYAIMLS 233
+ + +A + F +L E+L+ P E T +L L+ L L+
Sbjct: 83 LAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRALA 142
Query: 234 ATGIKLALWFYCRSSGNKIVRAYAKDHYFDVVTNVVGLIAAVLGDEFYWWIDPVGAILLA 293
AT + +V A + + D+ N L+A VL +WW D + A+L+A
Sbjct: 143 ATN-------------STVVEADSLHYKSDLFLNAAVLLALVLSQYGWWWADGLFAVLIA 189
Query: 294 IYTITNWSGTVQENAVSLVGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVE 353
Y + +L+ + + Q++ L+ + P++ + +R G F++
Sbjct: 190 CYIGQQAFDLGYRSIQALLDRELDEDTRQRIK-LIAKEDPRVLGLHDLRTRQAGKTVFIQ 248
Query: 354 VDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFVHLD 392
+EL +L L EAH+I ++ ++++ E +H D
Sbjct: 249 FHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQD 287
>pdb|2QFI|A Chain A, Structure Of The Zinc Transporter Yiip
pdb|2QFI|B Chain B, Structure Of The Zinc Transporter Yiip
Length = 300
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 123/285 (43%), Gaps = 25/285 (8%)
Query: 127 FLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPI-------- 178
LL KI+A +GS++I A+ +DSL+D+ A S+ N+ + +Y +
Sbjct: 22 LLLLIKIFAWWYTGSVSILAALVDSLVDIGA---------SLTNLLVVRYSLQPADDNHS 72
Query: 179 -GKLRMQPVGIIIFAAVMATLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGI 237
G + + + + + ++ + + ++ LI P ++ + A++ + +
Sbjct: 73 FGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILV 132
Query: 238 KLALWFYCRSSGNKIVRAYAKDHYFDVVTNVVGLIAAVLGDEFYWW--IDPVGAILLAIY 295
W R + ++ VRA + DV+ N G I LG +Y W D + A+ + IY
Sbjct: 133 SFQRWV-VRRTQSQAVRADMLHYQSDVMMN--GAILLALGLSWYGWHRADALFALGIGIY 189
Query: 296 TITNWSGTVQENAVSLVGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVD 355
+ + E SL+ ++ E Q++ +V P + +R G F+++
Sbjct: 190 ILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSW-PGVSGAHDLRTRQSGPTRFIQIH 248
Query: 356 IELPEDLPLKEAHTIGESLQIKIEELPEVERAFVHLDFECDHKPE 400
+E+ + LPL +AH + + ++ I +H D C P
Sbjct: 249 LEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQD-PCSVVPR 292
>pdb|3H90|A Chain A, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|B Chain B, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|C Chain C, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|D Chain D, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
Length = 283
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 118/263 (44%), Gaps = 24/263 (9%)
Query: 127 FLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPI-------- 178
LL KI+A +GS++I A+ +DSL+D+ A S+ N+ + +Y +
Sbjct: 15 LLLLIKIFAWWYTGSVSILAALVDSLVDIGA---------SLTNLLVVRYSLQPADDNHS 65
Query: 179 -GKLRMQPVGIIIFAAVMATLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGI 237
G + + + + + ++ + + ++ LI P ++ + A++ + +
Sbjct: 66 FGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILV 125
Query: 238 KLALWFYCRSSGNKIVRAYAKDHYFDVVTNVVGLIAAVLGDEFYWW--IDPVGAILLAIY 295
W R + ++ VRA + DV+ N G I LG +Y W D + A+ + IY
Sbjct: 126 SFQRWV-VRRTQSQAVRADMLHYQSDVMMN--GAILLALGLSWYGWHRADALFALGIGIY 182
Query: 296 TITNWSGTVQENAVSLVGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVD 355
+ + E SL+ ++ E Q++ +V P + +R G F+++
Sbjct: 183 ILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSW-PGVSGAHDLRTRQSGPTRFIQIH 241
Query: 356 IELPEDLPLKEAHTIGESLQIKI 378
+E+ + LPL +AH + + ++ I
Sbjct: 242 LEMEDSLPLVQAHMVADQVEQAI 264
>pdb|2ZZT|A Chain A, Crystal Structure Of The Cytosolic Domain Of The Cation
Diffusion Facilitator Family Protein
Length = 107
Score = 34.7 bits (78), Expect = 0.093, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 326 YLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELP--- 382
+ V++ P + VR G YF+E DIE+ +K+AH + +++I+ E L
Sbjct: 16 FAVLERFPNVHNPHRVRIRRVGTKYFIEXDIEVDGKXSVKDAHEL--TVKIRKEXLKRRD 73
Query: 383 EVERAFVHLD 392
++E +H++
Sbjct: 74 DIEDVTIHVE 83
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|B Chain B, Covalent Ubiquitin-Usp5 Complex
Length = 854
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 19/96 (19%)
Query: 300 WSGTVQENAVSLVGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYF---VEVDI 356
WS +Q +V++ + YLVIQ ++ +TFG+ + ++V I
Sbjct: 565 WSTALQAKSVAV----KTTRFASFPDYLVIQ----------IKKFTFGLDWVPKKLDVSI 610
Query: 357 ELPEDLPLKEAHTIGESLQIKIEELPEVERAFVHLD 392
E+PE+L + + G LQ EELP++ V D
Sbjct: 611 EMPEELDISQLRGTG--LQPGEEELPDIAPPLVTPD 644
>pdb|1YVG|A Chain A, Structural Analysis Of The Catalytic Domain Of Tetanus
Neurotoxin
Length = 468
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 18/66 (27%)
Query: 48 LPEKVRSGLDPETPFHLDLSKTTGLIEGEKEYYEKQFATLKSFEEVDSLVSNNAIDEEKY 107
+PE+ G PE D + + LIEG EYY+ + S D++++
Sbjct: 45 VPERYEFGTKPE-----DFNPPSSLIEGASEYYDPNYLRTDS-------------DKDRF 86
Query: 108 LQEQVQ 113
LQ V+
Sbjct: 87 LQTMVK 92
>pdb|1Z7H|A Chain A, 2.3 Angstrom Crystal Structure Of Tetanus Neurotoxin Light
Chain
Length = 447
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 18/66 (27%)
Query: 48 LPEKVRSGLDPETPFHLDLSKTTGLIEGEKEYYEKQFATLKSFEEVDSLVSNNAIDEEKY 107
+PE+ G PE D + + LIEG EYY+ + S D++++
Sbjct: 50 VPERYEFGTKPE-----DFNPPSSLIEGASEYYDPNYLRTDS-------------DKDRF 91
Query: 108 LQEQVQ 113
LQ V+
Sbjct: 92 LQTMVK 97
>pdb|3V5S|A Chain A, Structure Of SodiumCALCIUM EXCHANGER FROM METHANOCOCCUS
JANNASCHII
pdb|3V5U|A Chain A, Structure Of SodiumCALCIUM EXCHANGER FROM
METHANOCALDOCOCCUS Jannaschii Dsm 2661
Length = 320
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 271 LIAAVLGDEFYWWIDPVGAILLAI----YTITNWSGTVQENAVSLVGQSASPEVLQKLTY 326
+ AAV+G + + WID V ++L I +T+ N S ++EN +P V+ L
Sbjct: 113 IFAAVIGIDGFSWIDGVVLLILFIIYLRWTVKNGSAEIEEN-----NDKNNPSVVFSLVL 167
Query: 327 LVI 329
L+I
Sbjct: 168 LII 170
>pdb|1LBM|A Chain A, Crystal Structure Of Phosphoribosyl Anthranilate Isomerase
(Prai) In Complex With Reduced
1-(O-Carboxyphenylamino)-1-Deoxyribulose 5- Phosphate
(Rcdrp)
pdb|1NSJ|A Chain A, Crystal Structure Of Phosphoribosyl Anthranilate Isomerase
From Thermotoga Maritima
Length = 205
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 49 PEKVRSGLDPETPFHLDLSKTTGLIEGEKEY 79
PE VRS +D PF +D+S G+K++
Sbjct: 162 PENVRSAIDVVRPFAVDVSSGVEAFPGKKDH 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,304,698
Number of Sequences: 62578
Number of extensions: 494023
Number of successful extensions: 1142
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1131
Number of HSP's gapped (non-prelim): 16
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)