Query 015157
Match_columns 412
No_of_seqs 258 out of 1726
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:39:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1485 Mitochondrial Fe2+ tra 100.0 2.6E-63 5.6E-68 487.3 33.7 366 39-404 33-410 (412)
2 COG0053 MMT1 Predicted Co/Zn/C 100.0 7.5E-51 1.6E-55 397.7 38.2 288 108-402 5-298 (304)
3 PRK09509 fieF ferrous iron eff 100.0 8.2E-50 1.8E-54 391.3 38.6 277 112-395 7-288 (299)
4 PRK03557 zinc transporter ZitB 100.0 7.5E-48 1.6E-52 379.2 34.6 278 114-401 17-299 (312)
5 TIGR01297 CDF cation diffusion 100.0 6.2E-46 1.3E-50 358.1 31.0 261 128-394 2-268 (268)
6 COG1230 CzcD Co/Zn/Cd efflux s 100.0 5.6E-41 1.2E-45 322.0 31.4 276 110-395 16-295 (296)
7 PF01545 Cation_efflux: Cation 100.0 1.4E-42 3E-47 337.2 15.5 273 118-396 1-283 (284)
8 KOG1484 Putative Zn2+ transpor 100.0 1.5E-27 3.3E-32 227.9 25.2 269 115-394 34-347 (354)
9 KOG1482 Zn2+ transporter [Inor 99.9 3.1E-26 6.6E-31 222.1 20.5 283 111-402 68-374 (379)
10 COG3965 Predicted Co/Zn/Cd cat 99.9 1.6E-25 3.5E-30 206.4 23.3 274 112-392 16-307 (314)
11 KOG1483 Zn2+ transporter ZNT1 99.9 3.1E-26 6.7E-31 222.8 13.0 270 116-395 9-371 (404)
12 KOG2802 Membrane protein HUEL 99.7 5.9E-17 1.3E-21 156.3 12.9 177 112-297 203-404 (503)
13 COG0053 MMT1 Predicted Co/Zn/C 98.3 1.1E-05 2.3E-10 79.6 12.5 98 112-217 117-214 (304)
14 TIGR01297 CDF cation diffusion 98.1 2.4E-05 5.3E-10 75.3 10.8 94 115-216 97-190 (268)
15 PRK09509 fieF ferrous iron eff 98.1 4.4E-05 9.5E-10 75.1 12.5 94 116-217 119-212 (299)
16 PRK03557 zinc transporter ZitB 97.3 0.0017 3.7E-08 64.3 11.1 91 118-216 128-218 (312)
17 KOG1485 Mitochondrial Fe2+ tra 95.7 0.039 8.5E-07 55.8 8.0 93 116-216 231-323 (412)
18 PF01545 Cation_efflux: Cation 95.0 0.026 5.7E-07 54.6 4.4 92 118-216 109-203 (284)
19 COG1230 CzcD Co/Zn/Cd efflux s 90.7 4.1 8.8E-05 40.0 12.0 79 236-314 33-119 (296)
20 PF03780 Asp23: Asp23 family; 86.9 9.1 0.0002 31.2 10.1 53 340-392 49-105 (108)
21 PF14535 AMP-binding_C_2: AMP- 82.0 11 0.00024 30.3 8.3 71 321-393 6-78 (96)
22 KOG1484 Putative Zn2+ transpor 80.7 19 0.00042 35.8 10.8 85 229-313 39-131 (354)
23 TIGR02898 spore_YhcN_YlaJ spor 80.4 15 0.00034 32.6 9.3 71 319-395 54-125 (158)
24 COG4858 Uncharacterized membra 80.2 42 0.00092 30.7 11.9 18 281-298 190-207 (226)
25 PF07444 Ycf66_N: Ycf66 protei 78.8 29 0.00064 27.5 9.3 46 259-304 33-81 (84)
26 COG4956 Integral membrane prot 76.4 84 0.0018 31.1 14.0 55 261-315 78-141 (356)
27 PF09580 Spore_YhcN_YlaJ: Spor 75.5 14 0.00031 33.0 7.8 69 318-394 74-143 (177)
28 PF10934 DUF2634: Protein of u 68.8 24 0.00052 29.4 7.1 51 307-358 52-107 (112)
29 PF00873 ACR_tran: AcrB/AcrD/A 68.4 2.3E+02 0.005 32.8 24.0 44 350-393 559-602 (1021)
30 cd04870 ACT_PSP_1 CT domains f 68.2 19 0.00042 27.2 6.0 67 317-393 9-75 (75)
31 PF01883 DUF59: Domain of unkn 67.9 30 0.00064 25.9 7.0 50 337-389 22-72 (72)
32 TIGR03221 muco_delta muconolac 62.3 51 0.0011 26.5 7.4 22 350-371 2-23 (90)
33 TIGR03406 FeS_long_SufT probab 57.3 92 0.002 28.2 9.2 79 319-399 73-161 (174)
34 PRK14646 hypothetical protein; 51.4 94 0.002 27.5 8.1 62 319-380 4-68 (155)
35 PF13710 ACT_5: ACT domain; PD 51.2 62 0.0013 23.9 5.9 61 318-387 3-63 (63)
36 PRK14647 hypothetical protein; 50.3 1E+02 0.0022 27.3 8.2 46 336-381 23-68 (159)
37 cd04900 ACT_UUR-like_1 ACT dom 50.2 87 0.0019 23.4 6.8 42 317-361 11-52 (73)
38 cd04869 ACT_GcvR_2 ACT domains 49.5 80 0.0017 23.8 6.7 54 317-376 9-68 (81)
39 PRK11152 ilvM acetolactate syn 47.7 1.1E+02 0.0024 23.7 7.0 63 317-389 13-75 (76)
40 PRK11023 outer membrane lipopr 47.6 34 0.00075 31.3 4.9 70 310-393 80-151 (191)
41 COG2151 PaaD Predicted metal-s 46.9 1.7E+02 0.0037 24.4 9.6 76 317-398 10-96 (111)
42 TIGR02945 SUF_assoc FeS assemb 46.8 1.5E+02 0.0032 23.6 9.3 49 352-402 39-88 (99)
43 PHA02975 hypothetical protein; 46.3 1.1E+02 0.0024 23.2 6.4 33 184-216 2-36 (69)
44 PRK14640 hypothetical protein; 45.8 1.2E+02 0.0026 26.7 7.9 46 336-381 21-66 (152)
45 COG2098 Uncharacterized protei 45.7 33 0.00072 28.4 3.9 36 363-398 35-70 (116)
46 PRK10263 DNA translocase FtsK; 44.9 6.2E+02 0.013 30.3 15.2 30 268-297 142-171 (1355)
47 COG2921 Uncharacterized conser 44.5 1.6E+02 0.0035 23.6 7.4 66 312-386 21-88 (90)
48 COG1955 FlaJ Archaeal flagella 44.3 2.3E+02 0.005 30.1 10.7 111 21-136 69-188 (527)
49 PF13291 ACT_4: ACT domain; PD 44.0 95 0.0021 23.5 6.3 60 318-387 17-78 (80)
50 PRK00907 hypothetical protein; 42.2 1.6E+02 0.0036 23.6 7.5 67 311-386 22-90 (92)
51 KOG1482 Zn2+ transporter [Inor 41.1 1.2E+02 0.0025 30.9 7.7 69 246-314 94-170 (379)
52 PF11381 DUF3185: Protein of u 40.3 1.1E+02 0.0024 22.5 5.6 48 187-239 6-56 (59)
53 PRK14634 hypothetical protein; 40.1 1.8E+02 0.0038 25.7 8.1 49 336-384 22-72 (155)
54 PRK10503 multidrug efflux syst 39.9 6.7E+02 0.014 29.2 20.1 43 350-392 568-610 (1040)
55 PRK14638 hypothetical protein; 39.2 1.8E+02 0.0038 25.6 7.9 45 336-380 23-68 (150)
56 COG1302 Uncharacterized protei 39.0 2.5E+02 0.0055 24.2 9.7 87 304-396 26-116 (131)
57 PF13740 ACT_6: ACT domain; PD 37.4 1.6E+02 0.0035 22.2 6.6 40 317-359 12-51 (76)
58 PF11712 Vma12: Endoplasmic re 37.2 1.1E+02 0.0024 26.4 6.3 47 118-164 77-126 (142)
59 TIGR03319 YmdA_YtgF conserved 36.8 95 0.0021 33.1 6.8 63 321-390 439-504 (514)
60 PRK00092 ribosome maturation p 36.4 2.5E+02 0.0053 24.6 8.4 59 320-381 9-67 (154)
61 PRK14632 hypothetical protein; 36.1 1.8E+02 0.004 26.1 7.7 57 321-381 11-67 (172)
62 PRK14633 hypothetical protein; 34.7 2.8E+02 0.0061 24.3 8.5 58 320-381 6-63 (150)
63 COG2056 Predicted permease [Ge 34.6 1.8E+02 0.0039 29.6 7.8 59 113-182 237-296 (444)
64 PRK02047 hypothetical protein; 34.6 2.4E+02 0.0052 22.5 7.8 66 312-386 22-89 (91)
65 PRK00106 hypothetical protein; 34.4 87 0.0019 33.5 6.1 62 321-390 460-525 (535)
66 PF00368 HMG-CoA_red: Hydroxym 33.8 3.5E+02 0.0076 27.6 10.1 82 320-402 124-206 (373)
67 PRK12704 phosphodiesterase; Pr 33.7 94 0.002 33.1 6.2 62 321-390 445-510 (520)
68 PRK00341 hypothetical protein; 32.8 2.5E+02 0.0054 22.4 7.2 65 311-385 22-88 (91)
69 PLN02601 beta-carotene hydroxy 32.8 3.6E+02 0.0077 26.3 9.2 21 259-279 178-198 (303)
70 PF02790 COX2_TM: Cytochrome C 32.8 1.7E+02 0.0037 22.3 6.2 31 171-201 50-80 (84)
71 cd04872 ACT_1ZPV ACT domain pr 31.6 83 0.0018 24.5 4.2 54 317-376 11-65 (88)
72 PRK14635 hypothetical protein; 30.8 3.8E+02 0.0083 23.8 8.9 45 336-380 20-68 (162)
73 COG4331 Predicted membrane pro 30.8 2.3E+02 0.0051 24.9 6.9 51 116-169 107-157 (167)
74 COG1183 PssA Phosphatidylserin 29.0 5.1E+02 0.011 24.6 9.7 82 229-312 40-121 (234)
75 cd04871 ACT_PSP_2 ACT domains 28.4 2E+02 0.0043 22.4 5.8 62 311-376 4-71 (84)
76 cd00643 HMG-CoA_reductase_clas 28.2 5E+02 0.011 26.8 10.1 82 320-402 150-232 (403)
77 PRK14639 hypothetical protein; 28.1 1.9E+02 0.0042 25.0 6.2 46 336-381 12-57 (140)
78 PRK00194 hypothetical protein; 28.1 1.1E+02 0.0024 23.7 4.5 41 317-360 13-53 (90)
79 PF05105 Phage_holin_4: Holin 27.8 3.5E+02 0.0076 22.4 12.9 32 285-318 74-105 (118)
80 PRK14636 hypothetical protein; 27.6 4E+02 0.0087 24.1 8.4 63 319-384 6-70 (176)
81 PRK09977 putative Mg(2+) trans 26.9 5.3E+02 0.011 24.1 11.0 60 319-388 154-213 (215)
82 PF06570 DUF1129: Protein of u 26.6 5E+02 0.011 23.7 12.2 166 71-249 1-202 (206)
83 COG1971 Predicted membrane pro 26.5 5.1E+02 0.011 23.8 18.6 21 189-209 71-91 (190)
84 PF12327 FtsZ_C: FtsZ family, 26.1 1.2E+02 0.0026 24.3 4.3 29 352-380 39-67 (95)
85 PRK14637 hypothetical protein; 25.9 4.6E+02 0.0099 23.0 9.5 58 320-380 10-67 (151)
86 PRK04998 hypothetical protein; 25.9 3.3E+02 0.0072 21.4 7.7 63 312-385 21-85 (88)
87 PF02038 ATP1G1_PLM_MAT8: ATP1 25.7 95 0.0021 22.1 3.1 27 176-203 7-33 (50)
88 PHA02819 hypothetical protein; 25.6 3.1E+02 0.0067 21.0 6.9 31 184-214 2-34 (71)
89 COG3978 Acetolactate synthase 25.2 3.4E+02 0.0074 21.4 6.4 65 315-389 11-75 (86)
90 PRK10764 potassium-tellurite e 25.1 6.7E+02 0.015 24.7 12.2 25 188-212 11-35 (324)
91 cd04875 ACT_F4HF-DF N-terminal 24.9 2.9E+02 0.0063 20.4 7.3 48 317-365 9-57 (74)
92 cd04888 ACT_PheB-BS C-terminal 24.8 2.8E+02 0.0061 20.2 6.8 63 318-389 11-74 (76)
93 PRK02507 proton extrusion prot 24.5 8.1E+02 0.018 25.4 13.6 117 112-255 293-415 (422)
94 PF09685 Tic20: Tic20-like pro 24.4 3.6E+02 0.0079 21.4 8.9 20 159-178 85-104 (109)
95 cd04928 ACT_TyrKc Uncharacteri 24.3 3.2E+02 0.0069 20.6 7.0 57 317-378 11-67 (68)
96 PF11654 DUF2665: Protein of u 24.0 85 0.0019 22.1 2.6 20 281-300 4-23 (47)
97 PRK14645 hypothetical protein; 23.9 5.1E+02 0.011 22.9 8.7 58 321-381 12-71 (154)
98 PF11368 DUF3169: Protein of u 23.5 6.3E+02 0.014 23.8 10.6 20 109-128 91-110 (248)
99 TIGR00816 tdt C4-dicarboxylate 23.4 7E+02 0.015 24.3 11.1 21 281-301 100-120 (320)
100 COG0581 PstA ABC-type phosphat 23.3 7.2E+02 0.016 24.4 10.0 55 256-310 109-169 (292)
101 PF04456 DUF503: Protein of un 23.2 3E+02 0.0064 22.0 6.0 41 351-393 4-44 (90)
102 CHL00043 cemA envelope membran 22.9 7E+02 0.015 24.1 15.3 117 112-255 132-254 (261)
103 TIGR00473 pssA CDP-diacylglyce 22.8 5.2E+02 0.011 22.6 12.0 78 229-309 25-102 (151)
104 PRK11598 putative metal depend 22.6 9.7E+02 0.021 25.7 14.9 24 194-217 91-114 (545)
105 PRK09577 multidrug efflux prot 21.9 1.9E+02 0.0041 33.6 6.5 41 351-391 568-608 (1032)
106 cd04874 ACT_Af1403 N-terminal 21.5 3E+02 0.0065 19.4 5.9 62 318-390 11-72 (72)
107 KOG3088 Secretory carrier memb 21.3 7.9E+02 0.017 24.2 10.6 22 73-94 63-84 (313)
108 PRK14643 hypothetical protein; 21.1 5.9E+02 0.013 22.7 8.1 45 336-380 24-72 (164)
109 PHA02692 hypothetical protein; 20.8 3.9E+02 0.0084 20.4 5.8 33 184-216 2-36 (70)
110 PRK05783 hypothetical protein; 20.5 4.4E+02 0.0095 20.8 8.1 62 322-393 21-83 (84)
111 PRK02289 4-oxalocrotonate taut 20.3 2.6E+02 0.0055 20.1 4.7 39 354-392 4-44 (60)
112 COG1114 BrnQ Branched-chain am 20.3 9.9E+02 0.021 24.9 17.6 70 135-212 131-216 (431)
113 PRK14641 hypothetical protein; 20.2 5.4E+02 0.012 23.2 7.7 45 336-380 24-68 (173)
No 1
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-63 Score=487.34 Aligned_cols=366 Identities=43% Similarity=0.589 Sum_probs=314.6
Q ss_pred cchhhhhhccchhhhcCCCCCCccccccccc-ccchhhhHHHHHHHHHhhhhHHhhhhhhccCccC----HHHHHHHHHH
Q 015157 39 SLKCDFFSKLPEKVRSGLDPETPFHLDLSKT-TGLIEGEKEYYEKQFATLKSFEEVDSLVSNNAID----EEKYLQEQVQ 113 (412)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fy~~q~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~ 113 (412)
++..+++...+.++++....+...+..-+.. -...++..+||.+|.++++.|.+.......+..+ +++.++..+.
T Consensus 33 ~~~~~~f~~~~e~~~~~~r~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 112 (412)
T KOG1485|consen 33 SEKLDNFELISEQINSENRTCRRTKLHKSLRSPEKEDNVSEFYSSQKSLLQKFVEHSHTHEHGFVSEALELEKLQILKNA 112 (412)
T ss_pred HHHHHHhccchhhhhcccccccccccccccccchhhhccchHHHHHHHHhcccccccccccCCCCccccchhhhhhhhcH
Confidence 3444444555666655553322222111111 0112344489999999999999988887764332 2222334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccchhhhHHHHHHHH
Q 015157 114 HERAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVGIIIFAA 193 (412)
Q Consensus 114 ~~~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~~~ 193 (412)
++++.|+++++|+.++++|+++|+.+||+|++||++||++|+++++++|++.+.++++++++||+|++|+||+|.+.+++
T Consensus 113 ~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S~ 192 (412)
T KOG1485|consen 113 ERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVSV 192 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCc-chhhhHH-----HHHHHHHHHHHHHHHHHHHHHHhhcC-HHHHHhHHHhhhhHHH
Q 015157 194 VMATLGFQVLVQAVEQLIKDEPSE-KMTSLQL-----IWLYAIMLSATGIKLALWFYCRSSGN-KIVRAYAKDHYFDVVT 266 (412)
Q Consensus 194 ~m~~~~~~vl~esi~~Li~~~~~~-~~~~~~~-----~~~i~i~~ia~vv~~~l~~~~~~~~s-~~l~a~a~~~~~Dvi~ 266 (412)
+|.++|+++++++++.+..+.... .++++.. .|.+++++.+..+++.++++|+..++ ..++|+|+|||+|+++
T Consensus 193 iMa~agv~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a~~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lT 272 (412)
T KOG1485|consen 193 IMAMAGVQIIWSSLRLIVGPHAIGHHHNPSQLIFINALWLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLT 272 (412)
T ss_pred HHHHHHHHHHHHhHHhhhcccccccccCchhhcccchhhhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHH
Confidence 999999999999999988822211 1222232 38889999999999999999988876 8899999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCCCccccceeEEEEe
Q 015157 267 NVVGLIAAVLGDEFYWWIDPVGAILLAIYTITNWSGTVQENAVSLVGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTF 346 (412)
Q Consensus 267 ~~~~lv~~~l~~~~~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~ 346 (412)
|.++++|+.++.++|||+||+||++++.|+++.|+++..+++.+|+|+++|||.++++++.+.++.+.++.+++++.|++
T Consensus 273 n~vaLva~~la~~~~~~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv~~y~~ 352 (412)
T KOG1485|consen 273 NSVALVAASLAYYYNYWLDPIGAILVSTYIIYTGGRTGLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTVRAYTF 352 (412)
T ss_pred HHHHHHHHHHHHhhhhcccchhhhhhheehhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCccccceeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999779999999999999
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEEEEEEeeccCCCCccccc
Q 015157 347 GVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFVHLDFECDHKPEHSVL 404 (412)
Q Consensus 347 G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~~Vhvd~~~~~~peh~~~ 404 (412)
|..++|++||++|++++++++|+|++.+|++|+.+|+|+|+|||+|++++|+|+|..+
T Consensus 353 g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~l~ever~fvh~d~e~~hr~~~~~~ 410 (412)
T KOG1485|consen 353 GSHYFVEVHIVLDEDLSLSVAHDIGETLQKKIELLPEVERAFVHIDYEFLHRPHHEHL 410 (412)
T ss_pred cceEEEEEeeecCCCCccHHHHHHHHHHHHHHhhcchheeeeeecCccccCCchHhhc
Confidence 9999999999999999999999999999999999999999999999999999999754
No 2
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-51 Score=397.74 Aligned_cols=288 Identities=27% Similarity=0.416 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccchhhhHH
Q 015157 108 LQEQVQHERAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVG 187 (412)
Q Consensus 108 ~~~~~~~~~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~ 187 (412)
.++.+..+++.+++++.|+++++.|+++|+++||.||+||++||+.|++++++.+++.+.++||++++|||||+|+|+++
T Consensus 5 ~~~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~ 84 (304)
T COG0053 5 EERLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLA 84 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHh----hcCHHHHHhHHHhhhh
Q 015157 188 IIIFAAVMATLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGIKLALWFYCRS----SGNKIVRAYAKDHYFD 263 (412)
Q Consensus 188 ~li~~~~m~~~~~~vl~esi~~Li~~~~~~~~~~~~~~~~i~i~~ia~vv~~~l~~~~~~----~~s~~l~a~a~~~~~D 263 (412)
+++.|++++++|++++++++.+++.+.+.+ ...+++.+++++++++.++++|.++ .+|+.+.|++.|+++|
T Consensus 85 sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~-----~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD 159 (304)
T COG0053 85 SLIVSILIFAAGFEILLEAIKRLISPQPVE-----PPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSD 159 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHH
Confidence 999999999999999999999999976653 3457788999999999999998865 4588999999999999
Q ss_pred HHHHHHHHHHHHHHhh-hhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCCCccccceeE
Q 015157 264 VVTNVVGLIAAVLGDE-FYWWIDPVGAILLAIYTITNWSGTVQENAVSLVGQSASPEVLQKLTYLVIQHHPQIKRVDTVR 342 (412)
Q Consensus 264 vi~~~~~lv~~~l~~~-~~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~v~~vr 342 (412)
++++++++++.. +.+ .|||+||++|++|+++|++.+++++++++..|+|+++|++..++|++++.+. |+|.++|++|
T Consensus 160 ~~ts~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~~-~~V~~v~~lr 237 (304)
T COG0053 160 VLTSLAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSV-PGVKGVHDLR 237 (304)
T ss_pred HHHHHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHhcC-Ccceeeecce
Confidence 999997777655 554 4899999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHc-CCCccEEEEEEeeccCCCCccc
Q 015157 343 AYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEE-LPEVERAFVHLDFECDHKPEHS 402 (412)
Q Consensus 343 ~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~-l~~v~~~~Vhvd~~~~~~peh~ 402 (412)
+|+.|+.+++++||++|+++++.|+|+|++++++.|++ .|++.+++||+||......+..
T Consensus 238 ~R~~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~~~~~ 298 (304)
T COG0053 238 TRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKEEEKE 298 (304)
T ss_pred eeeeCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCcccccccc
Confidence 99999999999999999999999999999999999985 5669999999999766554443
No 3
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=8.2e-50 Score=391.34 Aligned_cols=277 Identities=21% Similarity=0.212 Sum_probs=250.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccchhhhHHHHHH
Q 015157 112 VQHERAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVGIIIF 191 (412)
Q Consensus 112 ~~~~~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~ 191 (412)
+..+++.++++++|++++++|+++|+.+||+||+||++||+.|++++++++++.+.++||++++|||||+|+|++++++.
T Consensus 7 ~~~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~ 86 (299)
T PRK09509 7 RLVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQ 86 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHH
Confidence 35669999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH----hhcCHHHHHhHHHhhhhHHHH
Q 015157 192 AAVMATLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGIKLALWFYCR----SSGNKIVRAYAKDHYFDVVTN 267 (412)
Q Consensus 192 ~~~m~~~~~~vl~esi~~Li~~~~~~~~~~~~~~~~i~i~~ia~vv~~~l~~~~~----~~~s~~l~a~a~~~~~Dvi~~ 267 (412)
|++++++++++++||++++++|++.+ ...+++.++++++++|.+++++++ +.+|+.+++.+.|+++|++++
T Consensus 87 ~~~l~~~~~~~~~esi~~l~~~~~~~-----~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s 161 (299)
T PRK09509 87 SMFISGSALFLFLTGIQHLISPTPMN-----DPGVGIIVTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMN 161 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCC-----cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877653 233456677888899988877775 456889999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCCCccccceeEEEEeC
Q 015157 268 VVGLIAAVLGDEFYWWIDPVGAILLAIYTITNWSGTVQENAVSLVGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTFG 347 (412)
Q Consensus 268 ~~~lv~~~l~~~~~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G 347 (412)
++++++.++..+.++|+||++++++++++++.|+++++++...|+|.++|++..++|++.+.++ |+|.++|++|+|+.|
T Consensus 162 ~~vl~~~~~~~~g~~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i~~~-~~v~~v~~l~~~~~G 240 (299)
T PRK09509 162 GAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSW-PGVSGAHDLRTRQSG 240 (299)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhC-CCCcCceeeeeEeeC
Confidence 8655544443334889999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHH-cCCCccEEEEEEeecc
Q 015157 348 VLYFVEVDIELPEDLPLKEAHTIGESLQIKIE-ELPEVERAFVHLDFEC 395 (412)
Q Consensus 348 ~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~-~l~~v~~~~Vhvd~~~ 395 (412)
+++++++||++|++++++|+|++++++|++|+ ++|++ +++||+||..
T Consensus 241 ~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~-~v~ihveP~~ 288 (299)
T PRK09509 241 PTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGS-DVIIHQDPCS 288 (299)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCC-EEEEEeCCCC
Confidence 99999999999999999999999999999997 46765 6999999954
No 4
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=7.5e-48 Score=379.22 Aligned_cols=278 Identities=16% Similarity=0.185 Sum_probs=247.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccchhhhHHHHHHHH
Q 015157 114 HERAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVGIIIFAA 193 (412)
Q Consensus 114 ~~~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~~~ 193 (412)
.+|.+++++++|++++++|+++|+++||.||+||++||+.|++++++++++.+.++||++++|||||+|+|++++++.|+
T Consensus 17 ~~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~ 96 (312)
T PRK03557 17 NARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAI 96 (312)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHh---hcCHHHHHhHHHhhhhHHHHHHH
Q 015157 194 VMATLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGIKLALWFYCRS---SGNKIVRAYAKDHYFDVVTNVVG 270 (412)
Q Consensus 194 ~m~~~~~~vl~esi~~Li~~~~~~~~~~~~~~~~i~i~~ia~vv~~~l~~~~~~---~~s~~l~a~a~~~~~Dvi~~~~~ 270 (412)
+|+++++++++||+++++++.+.+ ..++++++++++++|.+++++.++ .+|..+++.+.|+++|+++++++
T Consensus 97 ~l~~~~~~i~~eai~~l~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~v 170 (312)
T PRK03557 97 ALVVITILIVWEAIERFRTPRPVA------GGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGSVGA 170 (312)
T ss_pred HHHHHHHHHHHHHHHHHcCCcccc------chHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999775542 234556677888888887776654 34678999999999999999988
Q ss_pred HHHHHHHhhh-hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHH-hhCCCccccceeEEEEeCC
Q 015157 271 LIAAVLGDEF-YWWIDPVGAILLAIYTITNWSGTVQENAVSLVGQSASPEVLQKLTYLVI-QHHPQIKRVDTVRAYTFGV 348 (412)
Q Consensus 271 lv~~~l~~~~-~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~-~~~~~V~~v~~vr~~~~G~ 348 (412)
+++++++.++ |+|+||++++++++++++.+++++++++..|++.++|++..++|++.+. +. |+|+++|++|+|+.|+
T Consensus 171 lv~~~~~~~~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~~i~~~~-~gV~~vh~l~~~~~G~ 249 (312)
T PRK03557 171 IIAALIIIWTGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCREI-PEVRNVHHVHVWMVGE 249 (312)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHhcC-CCceeEEEEEEEEeCC
Confidence 8887766553 7899999999999999999999999999999998887777899988774 56 9999999999999999
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEEEEEEeeccCCCCcc
Q 015157 349 LYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFVHLDFECDHKPEH 401 (412)
Q Consensus 349 ~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~~Vhvd~~~~~~peh 401 (412)
++++++|++++++. ++|++++++|++|++.+++.+++||+||+.++.+++
T Consensus 250 ~~~v~~hv~v~~~~---~~~~i~~~i~~~l~~~~~i~~vtIh~e~~~~~~~~~ 299 (312)
T PRK03557 250 KPVMTLHVQVIPPH---DHDALLDRIQDYLMHHYQIEHATIQMEYQPCHGPDC 299 (312)
T ss_pred eEEEEEEEEECCCC---CHHHHHHHHHHHHHHhCCCCEEEEEeccCcCCCcch
Confidence 99999999999875 678999999999987778999999999986555543
No 5
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=6.2e-46 Score=358.09 Aligned_cols=261 Identities=24% Similarity=0.343 Sum_probs=240.4
Q ss_pred HHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015157 128 LLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVGIIIFAAVMATLGFQVLVQAV 207 (412)
Q Consensus 128 l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~~~~m~~~~~~vl~esi 207 (412)
++++|+++|+.+||.+|+||++||+.|++++++++++.+.++|+++++|||||+|+|++++++.|++|++.++.++++++
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si 81 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAI 81 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHh----hcCHHHHHhHHHhhhhHHHHHHHHHHHHHHhhhhhh
Q 015157 208 EQLIKDEPSEKMTSLQLIWLYAIMLSATGIKLALWFYCRS----SGNKIVRAYAKDHYFDVVTNVVGLIAAVLGDEFYWW 283 (412)
Q Consensus 208 ~~Li~~~~~~~~~~~~~~~~i~i~~ia~vv~~~l~~~~~~----~~s~~l~a~a~~~~~Dvi~~~~~lv~~~l~~~~~~~ 283 (412)
++++++++.+ ...+++.++++++++|+++++++++ .+|+.+++.+.|+++|++++++++++..+..++++|
T Consensus 82 ~~l~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~~~~~ 156 (268)
T TIGR01297 82 ERLINPEPEI-----DGGTMLIVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIYFGWHW 156 (268)
T ss_pred HHHhCCCCcc-----cchhHHHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876442 2345667788999999999988876 347889999999999999999777776666656889
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCCCccccceeEEEEeCC-eEEEEEEEEeCCCC
Q 015157 284 IDPVGAILLAIYTITNWSGTVQENAVSLVGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGV-LYFVEVDIELPEDL 362 (412)
Q Consensus 284 ~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~-~~~vev~I~v~~~~ 362 (412)
+||++++++++++++.++++++++...|+|.+++++..+++++.+.++ ++|.++|++|+|+.|+ ++++++||++|+++
T Consensus 157 ~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~~~~~i~~~i~~~-~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~ 235 (268)
T TIGR01297 157 ADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAILSI-PGVKGVHDLHIWRIGPGKLFLDVHVVVDPDL 235 (268)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHhcC-CCcccceEeEEEEcCCCCEEEEEEEEECCCC
Confidence 999999999999999999999999999999998899999999999988 9999999999999999 89999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-cCCCccEEEEEEeec
Q 015157 363 PLKEAHTIGESLQIKIE-ELPEVERAFVHLDFE 394 (412)
Q Consensus 363 ~l~eah~I~~~lq~~L~-~l~~v~~~~Vhvd~~ 394 (412)
+++|+|++++++|++++ ++|++++++||+||+
T Consensus 236 ~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~ 268 (268)
T TIGR01297 236 DLKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268 (268)
T ss_pred ChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 99999999999999986 579999999999983
No 6
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-41 Score=321.95 Aligned_cols=276 Identities=16% Similarity=0.215 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccchhhhHHHH
Q 015157 110 EQVQHERAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVGII 189 (412)
Q Consensus 110 ~~~~~~~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~l 189 (412)
...+.+|.+++++++|..++++|+++|+.|||+||+||++|++.|+++.++++++.+.++|+.+.+|||||.|+|.++++
T Consensus 16 ~~~~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~ 95 (296)
T COG1230 16 DNPRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAF 95 (296)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHH
Confidence 34556799999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--cCHHHHHhHHHhhhhHHHH
Q 015157 190 IFAAVMATLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGIKLALWFYCRSS--GNKIVRAYAKDHYFDVVTN 267 (412)
Q Consensus 190 i~~~~m~~~~~~vl~esi~~Li~~~~~~~~~~~~~~~~i~i~~ia~vv~~~l~~~~~~~--~s~~l~a~a~~~~~Dvi~~ 267 (412)
+++++++..++++++|+++||++|++.+ ...++.++++++++|+++.+..++. +|.++++...|..+|.++|
T Consensus 96 ~nav~Li~~s~~I~~EAi~R~~~P~~i~------~~~ml~va~~GL~vN~~~a~ll~~~~~~~lN~r~a~LHvl~D~Lgs 169 (296)
T COG1230 96 LNALLLIVVSLLILWEAIQRLLAPPPIH------YSGMLVVAIIGLVVNLVSALLLHKGHEENLNMRGAYLHVLGDALGS 169 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCC------ccchHHHHHHHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998874 2456788999999999988877765 3678999999999999999
Q ss_pred HHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCCCccccceeEEEEe
Q 015157 268 VVGLIAAVLGDEF-YWWIDPVGAILLAIYTITNWSGTVQENAVSLVGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTF 346 (412)
Q Consensus 268 ~~~lv~~~l~~~~-~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~ 346 (412)
+++++++++..++ |.|+||+.+++++++++..++++++++...|++..|+....+++++.+.+. |+|.++|++++|+.
T Consensus 170 v~vIia~i~i~~~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~~~-~~v~~vhdlHvWsi 248 (296)
T COG1230 170 VGVIIAAIVIRFTGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALLRI-PGVASVHDLHVWSI 248 (296)
T ss_pred HHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHhcC-CCccceeecccCCC
Confidence 9999999988876 779999999999999999999999999999999887777799999999877 99999999999999
Q ss_pred CC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEEEEEEeecc
Q 015157 347 GV-LYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFVHLDFEC 395 (412)
Q Consensus 347 G~-~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~~Vhvd~~~ 395 (412)
++ ....++|+++++..+-+ .+.+++++++.+.+++++++|++|+..
T Consensus 249 ~~~~~~~t~Hv~v~~~~~~~---~~~~~~~~~l~~~~~I~hvTiQ~e~~~ 295 (296)
T COG1230 249 TGGEHALTLHVVVDEVADAD---AALDQIVRRLLEKYGIEHVTIQLETEG 295 (296)
T ss_pred CCCceeEEEEEEecCccchH---HHHHHHHHHHhhhcCcceEEEEecCCC
Confidence 66 67799999999443332 288899999988889999999999753
No 7
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=1.4e-42 Score=337.18 Aligned_cols=273 Identities=25% Similarity=0.422 Sum_probs=238.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccchhhhHHHHHHHHHHHH
Q 015157 118 MNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVGIIIFAAVMAT 197 (412)
Q Consensus 118 l~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~~~~m~~ 197 (412)
+++++++|+++++.|+++|+.+||.++++|++|++.|+++.++.+++.+.+++|++.+||||++|+|++++++.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 57899999999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHh----hc--CHHHHHhHHHhhhhHHHHHHHH
Q 015157 198 LGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGIKLALWFYCRS----SG--NKIVRAYAKDHYFDVVTNVVGL 271 (412)
Q Consensus 198 ~~~~vl~esi~~Li~~~~~~~~~~~~~~~~i~i~~ia~vv~~~l~~~~~~----~~--s~~l~a~a~~~~~Dvi~~~~~l 271 (412)
+++.++.+++++++++.+.+. ..+++.+++++++++.+++++.++ .+ |+.+++.+.+++.|++.+++++
T Consensus 81 ~~~~~~~~si~~~~~~~~~~~-----~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~ 155 (284)
T PF01545_consen 81 LGLFLIVESIQRLISPHEPSP-----PGIVLIVALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVL 155 (284)
T ss_dssp HHHHHHHHHTTTSSSSSSSST-----TTS-THHHHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-
T ss_pred hHHHHHHHHhhcccccccchh-----hhhhhhhhhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHH
Confidence 999999999999999865531 223444588888999988888866 44 8889999999999999998777
Q ss_pred HHHHHHhhh-h-hhhhhHHHHHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCCCccccceeEEEEeCC-
Q 015157 272 IAAVLGDEF-Y-WWIDPVGAILLAIYTITNWSGTVQENAVSLVGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGV- 348 (412)
Q Consensus 272 v~~~l~~~~-~-~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~- 348 (412)
++.++...+ + ||+||++++++++++++.+++.++++...|+|.+++++..+++++.+++. |+|.+++++|+|+.|+
T Consensus 156 i~~~~~~~~~~~~~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~-~~v~~v~~~~~~~~g~~ 234 (284)
T PF01545_consen 156 ISLLLAYLGPWFWYADPVASLLIALFILYSGYPLIKESIRILLDASPDPELVEKIRRIIESV-PGVIEVHDLRVWQVGRN 234 (284)
T ss_dssp SSSTSSSTT-STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHT-SS-SEEEEEEEEEETT-
T ss_pred HHHHHHHHHhcccccchhhhhHHHHHHhhhhhhchhhhhcccccccccccchhHHHHhhccC-CceEeccceEEEEecCC
Confidence 776666554 3 35999999999999999999999999999999998899999999999997 9999999999999999
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHHHHH-cCCCccEEEEEEeeccC
Q 015157 349 LYFVEVDIELPEDLPLKEAHTIGESLQIKIE-ELPEVERAFVHLDFECD 396 (412)
Q Consensus 349 ~~~vev~I~v~~~~~l~eah~I~~~lq~~L~-~l~~v~~~~Vhvd~~~~ 396 (412)
++++++|+.+|++++++|+|++++++++.++ ++|++.+++||++|+.+
T Consensus 235 ~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~~ 283 (284)
T PF01545_consen 235 KYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDEE 283 (284)
T ss_dssp EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG
T ss_pred cEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence 8999999999999999999999999999997 57999999999999764
No 8
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.5e-27 Score=227.94 Aligned_cols=269 Identities=15% Similarity=0.167 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccchhhhHHHHHHHHH
Q 015157 115 ERAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVGIIIFAAV 194 (412)
Q Consensus 115 ~~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~~~~ 194 (412)
+|-+...+++|+.++..+++.+..|+|++|++|+.|+++|+.+..+.+++...+++|.+.+||||+.|+|.+++++++++
T Consensus 34 sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vf 113 (354)
T KOG1484|consen 34 SRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVF 113 (354)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hcC-------------------
Q 015157 195 MATLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGIKLALWFYCRS-----SGN------------------- 250 (412)
Q Consensus 195 m~~~~~~vl~esi~~Li~~~~~~~~~~~~~~~~i~i~~ia~vv~~~l~~~~~~-----~~s------------------- 250 (412)
+.+.++.++.|+++||++|+... ..-...++..+.++|++-.+..+. .++
T Consensus 114 lvl~a~fi~~Es~eRl~~ppei~------t~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~~ 187 (354)
T KOG1484|consen 114 LVLIAFFIFSESVERLFDPPEIH------TNRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHSLLG 187 (354)
T ss_pred HHHHHHHHhHHHHHHhcCchhcC------CceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhcccccccc
Confidence 99999999999999999985442 112234566666777653332221 010
Q ss_pred -----------------HHHHHhHHHhhhhHHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 015157 251 -----------------KIVRAYAKDHYFDVVTNVVGLIAAVLGDEF-YWWIDPVGAILLAIYTITNWSGTVQENAVSLV 312 (412)
Q Consensus 251 -----------------~~l~a~a~~~~~Dvi~~~~~lv~~~l~~~~-~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Ll 312 (412)
..+.-...|...|.+.+++++++.++..++ |.|+||+.+++||+.|+.+.+++++++...|+
T Consensus 188 ~~~~~~~~~~~i~g~~~~~m~gifLHVLaDtlgSvGviist~Li~~~gw~~aDpicsllIailIf~sv~PL~k~s~~iLL 267 (354)
T KOG1484|consen 188 VWDLHHHAHGHIHGHSHENMPGIFLHVLADTLGSVGVIISTLLIKLFGWMIADPICSLLIAILIFLSVLPLLKYSGKILL 267 (354)
T ss_pred ccccccccccccCCcccccccchhHHHHHHHhcchHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113345667888999999999999998865 78999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhh--CCCccccceeEEEEeCCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEEEE
Q 015157 313 GQSASPEVLQKLTYLVIQH--HPQIKRVDTVRAYTFGVL-YFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFV 389 (412)
Q Consensus 313 g~s~~~e~~~~I~~~~~~~--~~~V~~v~~vr~~~~G~~-~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~~V 389 (412)
.++ ||+..+.+.+.+.+. .++|.++.+-|+|+.++. +...+|+.+.++. +.+.+...+.++++.. +|.+.+|
T Consensus 268 q~t-Pp~~~~~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~da---de~~vl~~V~~~~~~~-gV~~ltv 342 (354)
T KOG1484|consen 268 QRT-PPHLENSLKQCLRQISTLDGVTSVQNPHFWTLESGSVVGTLHLQVSSDA---DEQSVLAHVTRKLEDA-GVKDLTV 342 (354)
T ss_pred hcC-ChhhhhHHHHHHHHhhccccceeeccCceeeccCCceEEEEEEEEecCc---chhHHHHHHHHHHHhc-ceeEEEE
Confidence 976 666655555544443 289999999999999985 8899999998876 3456777888888764 6999999
Q ss_pred EEeec
Q 015157 390 HLDFE 394 (412)
Q Consensus 390 hvd~~ 394 (412)
++|.+
T Consensus 343 Qv~~~ 347 (354)
T KOG1484|consen 343 QVEKE 347 (354)
T ss_pred EEecc
Confidence 98864
No 9
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.1e-26 Score=222.09 Aligned_cols=283 Identities=13% Similarity=0.132 Sum_probs=247.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccchhhhHHHHH
Q 015157 111 QVQHERAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVGIII 190 (412)
Q Consensus 111 ~~~~~~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li 190 (412)
++..+|.++++.++-+.+.+.+++.|+.+||+|+++|+.|.+.|+.+-.+++++.+.+++|.+.+..||+.|.|.+++++
T Consensus 68 ~~~~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~ 147 (379)
T KOG1482|consen 68 RRAAERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALV 147 (379)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHH
Confidence 33367889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHh------hcC--------------
Q 015157 191 FAAVMATLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGIKLALWFYCRS------SGN-------------- 250 (412)
Q Consensus 191 ~~~~m~~~~~~vl~esi~~Li~~~~~~~~~~~~~~~~i~i~~ia~vv~~~l~~~~~~------~~s-------------- 250 (412)
.-..+..+...+++++++|+++++.+. ....|++++.+++++|.++...... .+.
T Consensus 148 Sv~~IW~~tgvLV~~Ai~Rl~s~~~ev-----~g~~m~i~a~~gv~vNiim~~vL~~~~h~h~H~~~~s~g~~h~~~~~~ 222 (379)
T KOG1482|consen 148 SVLLIWVVTGVLVYEAIQRLLSGDYEV-----NGGIMLITAAVGVAVNIIMGFVLHQSGHGHSHGGSHSHGHSHDHGEEL 222 (379)
T ss_pred HHHHHHHhhhhhHHHHHhhhhcCceee-----cceEEEEEeehhhhhhhhhhhhhcccCCCCCCCCCCCcCccccccccc
Confidence 999999999999999999999998542 1234556677788888776544421 112
Q ss_pred -HHHHHhHHHhhhhHHHHHHHHHHHHHHhhh--hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 015157 251 -KIVRAYAKDHYFDVVTNVVGLIAAVLGDEF--YWWIDPVGAILLAIYTITNWSGTVQENAVSLVGQSASPEVLQKLTYL 327 (412)
Q Consensus 251 -~~l~a~a~~~~~Dvi~~~~~lv~~~l~~~~--~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~ 327 (412)
.+++|...|.+.|.+-++++++++.+.++. |.+.||+..++.+++++.+-.+++|+.+..|++.+|..-....++..
T Consensus 223 n~nvraAyiHVlGDliQSvGV~iaa~Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~ 302 (379)
T KOG1482|consen 223 NLNVRAAFVHVLGDLIQSVGVLIAALIIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKG 302 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhheeEEecccceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHHH
Confidence 679999999999999999999988877654 77899999999999999999999999999999988766679999999
Q ss_pred HHhhCCCccccceeEEEEeCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEEEEEEeeccCCCCccc
Q 015157 328 VIQHHPQIKRVDTVRAYTFGV-LYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFVHLDFECDHKPEHS 402 (412)
Q Consensus 328 ~~~~~~~V~~v~~vr~~~~G~-~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~~Vhvd~~~~~~peh~ 402 (412)
+... ++|+.||++|+|.... +....+|+..+++. ++..|-+++...|++.+++.+++|++||..+..+.+.
T Consensus 303 l~~i-egV~~VHdLhIWsiTv~k~~ls~Hv~i~~~a---d~~~vL~~~~~~i~~~~~~~~vTiQie~~~~~~~~c~ 374 (379)
T KOG1482|consen 303 LLSI-EGVKAVHDLHIWSITVGKVALSVHLAIDSEA---DAEEVLDEARSLIKRRYGISHVTIQIEPYTEEMDDCL 374 (379)
T ss_pred Hhhh-cceeEEEEEEEEEEecCceEEEEEEeecCCC---CHHHHHHHHHHHHHhhcceEEEEEEecCCccchhhHh
Confidence 9999 9999999999999986 56789999998765 4567888888889888999999999999887776554
No 10
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.6e-25 Score=206.35 Aligned_cols=274 Identities=16% Similarity=0.153 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCccchhhhHHHHH
Q 015157 112 VQHERAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMK-NINIYKYPIGKLRMQPVGIII 190 (412)
Q Consensus 112 ~~~~~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~-~~~~~~~P~G~~R~E~l~~li 190 (412)
..+++.+.+|++..++++...+++|+.+||++++-|++.|+.|++.+.++++..+... +|.+.+||||+.-+||+...+
T Consensus 16 ~~eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~i 95 (314)
T COG3965 16 SNEQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAI 95 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhhh
Confidence 3456899999999999999999999999999999999999999999999888766654 677779999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHh----hcCHHHHHhHHHhhhhHHH
Q 015157 191 FAAVMATLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGIKLALWFYCRS----SGNKIVRAYAKDHYFDVVT 266 (412)
Q Consensus 191 ~~~~m~~~~~~vl~esi~~Li~~~~~~~~~~~~~~~~i~i~~ia~vv~~~l~~~~~~----~~s~~l~a~a~~~~~Dvi~ 266 (412)
+|.+++.++++-++.++..++++.++. .+.++++..+++...++.+|+..+| .+|+.+.++...+..|...
T Consensus 96 ng~ll~ll~lyAlinAl~~l~dGGR~v-----~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~l 170 (314)
T COG3965 96 NGTLLALLCLYALINALGSLLDGGREV-----EPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCL 170 (314)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCccc-----cccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHH
Confidence 999999999999999999999999874 3567788888888888888887765 4588888999999999988
Q ss_pred HHHHHHHHHHHhh--------hhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCC--Ccc
Q 015157 267 NVVGLIAAVLGDE--------FYWWIDPVGAILLAIYTITNWSGTVQENAVSLVGQSASPEVLQKLTYLVIQHHP--QIK 336 (412)
Q Consensus 267 ~~~~lv~~~l~~~--------~~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~--~V~ 336 (412)
+.+.+++-.+++. +.+|+||+.-.+++++++..+.++++.+..+++.-+ |.|..++|+....+.-+ +..
T Consensus 171 S~al~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmt-P~el~q~ies~~~~~v~k~~f~ 249 (314)
T COG3965 171 SAALFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMT-PNELQQSIESHAHEIVEKYGFP 249 (314)
T ss_pred HHHHHHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHhcCc
Confidence 8765555444432 246999999999999999999999999999999976 45888888877665511 222
Q ss_pred ccceeEEEEeCCeEEEEEEEEeCCCC---CHHHHHHHHHHHHHHHHcCCCccEEEEEEe
Q 015157 337 RVDTVRAYTFGVLYFVEVDIELPEDL---PLKEAHTIGESLQIKIEELPEVERAFVHLD 392 (412)
Q Consensus 337 ~v~~vr~~~~G~~~~vev~I~v~~~~---~l~eah~I~~~lq~~L~~l~~v~~~~Vhvd 392 (412)
+ +++++-+.|+..++|+|..+|++. ++++.++|++++++.|..+|.-...+|.+-
T Consensus 250 ~-~~~yvArVGr~l~IEi~fiip~~~~ar~Ved~d~Irdei~~slg~~g~~rwltvsfT 307 (314)
T COG3965 250 S-YHVYVARVGRGLFIEIHFIIPRESDARNVEDWDDIRDEIGQSLGSLGYERWLTVSFT 307 (314)
T ss_pred h-HHHHHHHhccceEEEEEEEeCCccCCccchhHHHHHHHHHHHhhcCCcCceEEEEEe
Confidence 2 344577889999999999998775 467888999999999998888777777664
No 11
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.1e-26 Score=222.81 Aligned_cols=270 Identities=17% Similarity=0.258 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccchhhhHHHHHHHHHH
Q 015157 116 RAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVGIIIFAAVM 195 (412)
Q Consensus 116 ~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~~~~m 195 (412)
.-+..-+++.++++++|++.|+.++|+||+||++|+++|+++.++++++.+.+++....+||||+.|.|.+|++++++|+
T Consensus 9 ~rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl 88 (404)
T KOG1483|consen 9 LRLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFL 88 (404)
T ss_pred cceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHH
Confidence 34556678899999999999999999999999999999999999999999998885669999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHHHH---HHHHH---H----hh-----------------
Q 015157 196 ATLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGIKLA---LWFYC---R----SS----------------- 248 (412)
Q Consensus 196 ~~~~~~vl~esi~~Li~~~~~~~~~~~~~~~~i~i~~ia~vv~~~---l~~~~---~----~~----------------- 248 (412)
..+.+.++.|+++|++++..... +...+.+.+++++.|.+ ++.=+ . ..
T Consensus 89 ~alc~~I~~EA~~R~I~p~~i~~-----P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~ 163 (404)
T KOG1483|consen 89 TALCVSILIEAIERIIEPHHIEN-----PILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHL 163 (404)
T ss_pred HHHHHHHHHHHHHhhcCCccccC-----ceeeehhhHHHHHHHHHHhheeeccCcccCCcCCCCCCCccccchhhhccCC
Confidence 99999999999999999887632 22333444444455433 22111 0 00
Q ss_pred -----c--------------------------C------H------------------------HHHHhHHHhhhhHHHH
Q 015157 249 -----G--------------------------N------K------------------------IVRAYAKDHYFDVVTN 267 (412)
Q Consensus 249 -----~--------------------------s------~------------------------~l~a~a~~~~~Dvi~~ 267 (412)
| | + +++-.+.+...|++.+
T Consensus 164 ~~~~~G~~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~ 243 (404)
T KOG1483|consen 164 HSHAIGCNTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGS 243 (404)
T ss_pred chhccCCcchhhccccCCCCcchhhhccccccCCCCCCCccccCCcccccchhhhhhhhhhccccccceeeeeecccccc
Confidence 0 0 0 0011122345588888
Q ss_pred HHHHHHHHHHhhh----hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCCCccccceeEE
Q 015157 268 VVGLIAAVLGDEF----YWWIDPVGAILLAIYTITNWSGTVQENAVSLVGQSASPEVLQKLTYLVIQHHPQIKRVDTVRA 343 (412)
Q Consensus 268 ~~~lv~~~l~~~~----~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~v~~vr~ 343 (412)
++++++++..++. ..|+||+.+++++++++.+++++++|+...|+..+|..-.++++++.+.++ |||.+||++++
T Consensus 244 I~Vi~~A~~v~~t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~~-~gv~~vh~lhv 322 (404)
T KOG1483|consen 244 IIVIVSALFVYKTEYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLTV-PGVISVHDLHV 322 (404)
T ss_pred eEEEEEEEEEEecceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhcC-cceeeeeeeee
Confidence 8888887777654 348999999999999999999999999999999887666799999999998 99999999999
Q ss_pred EEe-CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEEEEEEeecc
Q 015157 344 YTF-GVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFVHLDFEC 395 (412)
Q Consensus 344 ~~~-G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~~Vhvd~~~ 395 (412)
|+. |..+...+||.++.. .+--++++.++..+.+ .+|..++++.|+..
T Consensus 323 WqL~~~r~IAt~Hi~~~~p---~~~~~~a~~ir~~fh~-~GIhs~TiqPeF~~ 371 (404)
T KOG1483|consen 323 WQLAGSRIIATIHIQIQNP---KEYMKIAEKIRSYFHD-QGIHSTTIQPEFAP 371 (404)
T ss_pred eeeccceEEEEEEEEecCc---HHHHHHHHHHHHHHHh-cCCcceeeccchhh
Confidence 998 678999999999621 2333788888888875 48999999998765
No 12
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=99.71 E-value=5.9e-17 Score=156.26 Aligned_cols=177 Identities=22% Similarity=0.170 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccchhhhHHHHHH
Q 015157 112 VQHERAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVGIIIF 191 (412)
Q Consensus 112 ~~~~~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~ 191 (412)
+...|++-+++++|.+-+.+|+.++++|||-+++|+++||++|..+.+++.++.+.+.+.++..|||||+++.++..+|.
T Consensus 203 k~s~rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLIS 282 (503)
T KOG2802|consen 203 KGSGRVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLIS 282 (503)
T ss_pred cCCCceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHh
Confidence 45568899999999999999999999999999999999999999999999999888888777999999999999999999
Q ss_pred HHHHH--HHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHHH-------------------HHHHhhcC
Q 015157 192 AAVMA--TLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGIKLALW-------------------FYCRSSGN 250 (412)
Q Consensus 192 ~~~m~--~~~~~vl~esi~~Li~~~~~~~~~~~~~~~~i~i~~ia~vv~~~l~-------------------~~~~~~~s 250 (412)
|+-++ +.|+. ++.++..|++|+|.+ ...|++.+...+++...... -|.++.++
T Consensus 283 gvGIfc~G~GlS-iyhGv~gLlhpePi~-----~l~~ay~il~gSl~~eGasllvAi~evkr~Ak~~gmSi~dYV~~~~D 356 (503)
T KOG2802|consen 283 GVGIFCMGCGLS-IYHGVMGLLHPEPIE-----SLLWAYCILAGSLVSEGASLLVAINEVKRNAKAKGMSIYDYVMESRD 356 (503)
T ss_pred ccceeeecccch-hhhccccccCCCCCc-----chHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHcCCCHHHHHhhcCC
Confidence 87554 34443 789999999999985 35566655554444432211 12222223
Q ss_pred HHHHHhHHHhhhhHHHHHHHHHHH-HHH--hh-hhhhhhhHHHHHHHHHHH
Q 015157 251 KIVRAYAKDHYFDVVTNVVGLIAA-VLG--DE-FYWWIDPVGAILLAIYTI 297 (412)
Q Consensus 251 ~~l~a~a~~~~~Dvi~~~~~lv~~-~l~--~~-~~~~~Dpi~aiiIa~~ii 297 (412)
|...+. ...|...-.++++++ .++ .+ ..|..|++|+|+|+.++-
T Consensus 357 Ps~nvV---l~EDtAAVtGv~IAaa~m~lss~tgnPIyD~~GSivvGaLLG 404 (503)
T KOG2802|consen 357 PSTNVV---LLEDTAAVTGVIIAAACMGLSSITGNPIYDSLGSIVVGALLG 404 (503)
T ss_pred CcceEE---EecchHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHH
Confidence 322211 122333333333332 222 22 289999999999887653
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.26 E-value=1.1e-05 Score=79.56 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccchhhhHHHHHH
Q 015157 112 VQHERAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVGIIIF 191 (412)
Q Consensus 112 ~~~~~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~ 191 (412)
...-.+..+++++|..+...+.-.+..+||.+|.||+.|...|+++++..+++..... +|+..++++++++.
T Consensus 117 ~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~~~~--------~g~~~lD~i~a~~I 188 (304)
T COG0053 117 LLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLGSL--------LGWPWLDPLAALLI 188 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------hCcHHHHHHHHHHH
Confidence 3445778889999999999999999999999999999999999999999888866322 56788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCc
Q 015157 192 AAVMATLGFQVLVQAVEQLIKDEPSE 217 (412)
Q Consensus 192 ~~~m~~~~~~vl~esi~~Li~~~~~~ 217 (412)
+++++..++.++.+++..|++...++
T Consensus 189 ~~~Il~~~~~~~~~s~~~L~d~~~~~ 214 (304)
T COG0053 189 SLYILKTGFRLFKESVNELMDAALDP 214 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCH
Confidence 99999999999999999999965553
No 14
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=98.08 E-value=2.4e-05 Score=75.30 Aligned_cols=94 Identities=19% Similarity=0.278 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccchhhhHHHHHHHHH
Q 015157 115 ERAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVGIIIFAAV 194 (412)
Q Consensus 115 ~~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~~~~ 194 (412)
-.+..+++++|.+++..+...+...+|.++.|++.|++.|+++++..+++...+. +|+..+|++++++.+++
T Consensus 97 ~~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~ 168 (268)
T TIGR01297 97 LIVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLL 168 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHH
Confidence 3566778899999999999999999999999999999999999998888766543 45778999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC
Q 015157 195 MATLGFQVLVQAVEQLIKDEPS 216 (412)
Q Consensus 195 m~~~~~~vl~esi~~Li~~~~~ 216 (412)
++..++.++++++..|++..++
T Consensus 169 i~~~~~~l~~~~~~~Ll~~~~~ 190 (268)
T TIGR01297 169 ILYTAFRLLKESINVLLDAAPD 190 (268)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999987764
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=98.07 E-value=4.4e-05 Score=75.10 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccchhhhHHHHHHHHHH
Q 015157 116 RAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVGIIIFAAVM 195 (412)
Q Consensus 116 ~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~~~~m 195 (412)
.+..+++++|.++...+...+..++|.++.||+.|+..|+++++..+++...+. +|+..++++++++.++++
T Consensus 119 ~~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~i 190 (299)
T PRK09509 119 IVTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYI 190 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHHH
Confidence 456678888998888888888899999999999999999999988777765542 367789999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCc
Q 015157 196 ATLGFQVLVQAVEQLIKDEPSE 217 (412)
Q Consensus 196 ~~~~~~vl~esi~~Li~~~~~~ 217 (412)
+..++.++++++..|++..+++
T Consensus 191 l~~~~~i~~~~~~~Ll~~~~~~ 212 (299)
T PRK09509 191 LYSALRMGYEAVQSLLDRALPD 212 (299)
T ss_pred HHHHHHHHHHHHHHHhccCCCH
Confidence 9999999999999999876553
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=97.34 E-value=0.0017 Score=64.32 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccchhhhHHHHHHHHHHHH
Q 015157 118 MNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVGIIIFAAVMAT 197 (412)
Q Consensus 118 l~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~~~~m~~ 197 (412)
...++++|.++..... -+-..+|.++.|++.|...|+++++.++++...... .|+.-++|+++++++++++.
T Consensus 128 ~~~~~~~~~~~~~~~~-~~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~ 199 (312)
T PRK03557 128 AVAGLLANILSFWLLH-HGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLR 199 (312)
T ss_pred HHHHHHHHHHHHHHHh-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHH
Confidence 3456677765544332 244568899999999999999999987776544321 23345899999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 015157 198 LGFQVLVQAVEQLIKDEPS 216 (412)
Q Consensus 198 ~~~~vl~esi~~Li~~~~~ 216 (412)
.++.++++++..|++..++
T Consensus 200 ~~~~l~~~~~~~Lld~~p~ 218 (312)
T PRK03557 200 SAWRLLKESVNELLEGAPV 218 (312)
T ss_pred HHHHHHHHHHHHHHccCCC
Confidence 9999999999999987665
No 17
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=95.67 E-value=0.039 Score=55.80 Aligned_cols=93 Identities=15% Similarity=0.245 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccchhhhHHHHHHHHHH
Q 015157 116 RAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVGIIIFAAVM 195 (412)
Q Consensus 116 ~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~~~~m 195 (412)
+.+.+++....+.+.+-++.+..++|-.+.|-|.|-..|++++.+.+++...+-.- +.-++|+|+++.+.++
T Consensus 231 ~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~~--------~~~lDP~gailVS~~i 302 (412)
T KOG1485|consen 231 WLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAYYY--------NYWLDPIGAILVSTYI 302 (412)
T ss_pred hhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh--------hhcccchhhhhhheeh
Confidence 44555677777788888888999999999999999999999999999987765432 2458999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCC
Q 015157 196 ATLGFQVLVQAVEQLIKDEPS 216 (412)
Q Consensus 196 ~~~~~~vl~esi~~Li~~~~~ 216 (412)
+..+.....+++..|++...+
T Consensus 303 i~t~~~t~~~~i~~Lvg~~a~ 323 (412)
T KOG1485|consen 303 IYTGGRTGLENIKELVGRSAP 323 (412)
T ss_pred hhhhhHHHHHHHHHHhCCCCC
Confidence 999999999999999987444
No 18
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=95.04 E-value=0.026 Score=54.56 Aligned_cols=92 Identities=20% Similarity=0.243 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--hHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccc-hhhhHHHHHHHHH
Q 015157 118 MNISNWANIFLLAFKIYATIQSG--SLAIAASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKL-RMQPVGIIIFAAV 194 (412)
Q Consensus 118 l~isi~~N~~l~~~k~~~~~~sg--S~aL~adaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~-R~E~l~~li~~~~ 194 (412)
..+++++|.++.....-.+-..+ |.++.+++.|++.|.+.++..+++.....-. +.. -++++++++.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~-------~~~~~~D~v~~l~i~~~ 181 (284)
T PF01545_consen 109 ALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLG-------PWFWYADPVASLLIALF 181 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--------STS-SSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHHH-------hcccccchhhhhHHHHH
Confidence 66777888888887777766677 9999999999999999998777665443322 222 3799999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC
Q 015157 195 MATLGFQVLVQAVEQLIKDEPS 216 (412)
Q Consensus 195 m~~~~~~vl~esi~~Li~~~~~ 216 (412)
++..++.++++++..|++..++
T Consensus 182 i~~~~~~~~~~~~~~Ll~~~~~ 203 (284)
T PF01545_consen 182 ILYSGYPLIKESIRILLDASPD 203 (284)
T ss_dssp HHHHHHHHHHHHHHHHTT-SHH
T ss_pred Hhhhhhhchhhhhccccccccc
Confidence 9999999999999999987644
No 19
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=90.69 E-value=4.1 Score=40.05 Aligned_cols=79 Identities=20% Similarity=0.089 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhcCHHHHHhHHHhhhhHHHHHHHHHHHHHHhh--------hhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 015157 236 GIKLALWFYCRSSGNKIVRAYAKDHYFDVVTNVVGLIAAVLGDE--------FYWWIDPVGAILLAIYTITNWSGTVQEN 307 (412)
Q Consensus 236 vv~~~l~~~~~~~~s~~l~a~a~~~~~Dvi~~~~~lv~~~l~~~--------~~~~~Dpi~aiiIa~~ii~~~~~~~~e~ 307 (412)
+..++-.......+|..+-|++.|..+|++..++++++..++.+ +|+-+.-++|++=++.++..+.-+++|+
T Consensus 33 ~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EA 112 (296)
T COG1230 33 AFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEA 112 (296)
T ss_pred HHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444556678999999999999999999988888777632 3677999999999999999999999999
Q ss_pred HHHhhCC
Q 015157 308 AVSLVGQ 314 (412)
Q Consensus 308 ~~~Llg~ 314 (412)
+..+...
T Consensus 113 i~R~~~P 119 (296)
T COG1230 113 IQRLLAP 119 (296)
T ss_pred HHHhcCC
Confidence 9999864
No 20
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=86.88 E-value=9.1 Score=31.17 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=37.6
Q ss_pred eeEEEEe-CCeEEEEEEEEeCCCCCHHH-HHHHHHHHHHHHHcCC--CccEEEEEEe
Q 015157 340 TVRAYTF-GVLYFVEVDIELPEDLPLKE-AHTIGESLQIKIEELP--EVERAFVHLD 392 (412)
Q Consensus 340 ~vr~~~~-G~~~~vev~I~v~~~~~l~e-ah~I~~~lq~~L~~l~--~v~~~~Vhvd 392 (412)
.+++... +..+.+++++.+....++.+ +.++.+++.+.++++- .+.++.|+++
T Consensus 49 ~v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 49 GVKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred CeEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 3566655 67889999999988877754 6667777777776543 4667777765
No 21
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=82.04 E-value=11 Score=30.31 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCC--HHHHHHHHHHHHHHHHcCCCccEEEEEEee
Q 015157 321 LQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLP--LKEAHTIGESLQIKIEELPEVERAFVHLDF 393 (412)
Q Consensus 321 ~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~--l~eah~I~~~lq~~L~~l~~v~~~~Vhvd~ 393 (412)
-.+|..++.++ |++..-..+.+.+.|..-.+.+.+++.++.+ ..+...++++|+++|++.-++ ++-|++-+
T Consensus 6 P~~Ie~vl~~~-~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv-~~~V~lv~ 78 (96)
T PF14535_consen 6 PSQIEEVLREF-PEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGV-RPEVELVP 78 (96)
T ss_dssp HHHHHHHHCTS-TTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEEEE-
T ss_pred HHHHHHHHHhC-cCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCc-eEEEEEEC
Confidence 36788899998 9988778888998888777899999988764 457778888888888764455 45666654
No 22
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=80.70 E-value=19 Score=35.79 Aligned_cols=85 Identities=18% Similarity=0.172 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHhHHHhhhhHHHHHHHHHHHHHHhhh--------hhhhhhHHHHHHHHHHHHHh
Q 015157 229 AIMLSATGIKLALWFYCRSSGNKIVRAYAKDHYFDVVTNVVGLIAAVLGDEF--------YWWIDPVGAILLAIYTITNW 300 (412)
Q Consensus 229 ~i~~ia~vv~~~l~~~~~~~~s~~l~a~a~~~~~Dvi~~~~~lv~~~l~~~~--------~~~~Dpi~aiiIa~~ii~~~ 300 (412)
...++.....++..+|+...+|..+-+++.+...|.....+++.+.++..+. +-.+..+++.+=+++....+
T Consensus 39 ~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl~a 118 (354)
T KOG1484|consen 39 LFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVLIA 118 (354)
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHHHHHHH
Confidence 3445566666677788888888889999999999999999999988776331 33567777777788888889
Q ss_pred HHHHHHHHHHhhC
Q 015157 301 SGTVQENAVSLVG 313 (412)
Q Consensus 301 ~~~~~e~~~~Llg 313 (412)
+.++.|++..|+.
T Consensus 119 ~fi~~Es~eRl~~ 131 (354)
T KOG1484|consen 119 FFIFSESVERLFD 131 (354)
T ss_pred HHHhHHHHHHhcC
Confidence 9999999999988
No 23
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=80.36 E-value=15 Score=32.63 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHc-CCCccEEEEEEeecc
Q 015157 319 EVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEE-LPEVERAFVHLDFEC 395 (412)
Q Consensus 319 e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~-l~~v~~~~Vhvd~~~ 395 (412)
+.-++|...+.+. .+|++..+.-.|...+|-++.. .+..-..+.+|..++.+.+++ .|.+.+|+|.-||+.
T Consensus 54 ~~A~~Ia~~v~~v----~~V~dA~vvVtg~~A~Vgv~~~--~~~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVsaDpd~ 125 (158)
T TIGR02898 54 DVADEIASEAAKV----KGVKDATVVITGNYAYVGVDLT--NGLEGSVTDELKEKVAETVKSTDNRIANVYVSADPDT 125 (158)
T ss_pred HHHHHHHHHHhcC----CCCceEEEEEECCEEEEEEEcC--CCcchhhHHHHHHHHHHHHHhhCCCcceEEEEcCHHH
Confidence 4455566555555 5567788888899888777544 334344567888999999987 899999999988764
No 24
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=80.24 E-value=42 Score=30.67 Aligned_cols=18 Identities=6% Similarity=0.176 Sum_probs=14.2
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 015157 281 YWWIDPVGAILLAIYTIT 298 (412)
Q Consensus 281 ~~~~Dpi~aiiIa~~ii~ 298 (412)
.+-+||+.-.+++..++.
T Consensus 190 N~~L~pi~l~IiGav~la 207 (226)
T COG4858 190 NPQLPPIALTIIGAVILA 207 (226)
T ss_pred CcCCchHHHHHHHHHHHH
Confidence 568899988888877764
No 25
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=78.78 E-value=29 Score=27.50 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=32.3
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhhhhhhH---HHHHHHHHHHHHhHHHH
Q 015157 259 DHYFDVVTNVVGLIAAVLGDEFYWWIDPV---GAILLAIYTITNWSGTV 304 (412)
Q Consensus 259 ~~~~Dvi~~~~~lv~~~l~~~~~~~~Dpi---~aiiIa~~ii~~~~~~~ 304 (412)
+...|.+.+.+|++++.......|-+||+ +-++.+...+.-++.++
T Consensus 33 ~Rd~D~~fs~vgLl~g~IL~~~gwRldp~ll~~Q~l~~~~~i~f~~e~i 81 (84)
T PF07444_consen 33 SRDYDIFFSSVGLLYGLILWFQGWRLDPILLFGQMLLVGLLIFFGWETI 81 (84)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999887777668889999 44455555554444433
No 26
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=76.37 E-value=84 Score=31.13 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHHHHhhh---------hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHhhCCC
Q 015157 261 YFDVVTNVVGLIAAVLGDEF---------YWWIDPVGAILLAIYTITNWSGTVQENAVSLVGQS 315 (412)
Q Consensus 261 ~~Dvi~~~~~lv~~~l~~~~---------~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s 315 (412)
..++++..+|++.+++.+.. .+++-++.++++++++.+.++........+++--.
T Consensus 78 ~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~~de~~~l~ 141 (356)
T COG4956 78 VTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADKKRDEFLRLL 141 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHHhc
Confidence 44555655555555444321 57889999999999999999998887777766543
No 27
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=75.45 E-value=14 Score=33.04 Aligned_cols=69 Identities=13% Similarity=0.226 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHc-CCCccEEEEEEeec
Q 015157 318 PEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEE-LPEVERAFVHLDFE 394 (412)
Q Consensus 318 ~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~-l~~v~~~~Vhvd~~ 394 (412)
.+..++|...+.+. .+|.+..+.-.|...+|-+++.-. . ....+|.+++++++++ .|.+.+|+|.-||.
T Consensus 74 ~~~a~~i~~~v~~~----~~V~~A~vvv~~~~a~Vav~~~~~-~---~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~~ 143 (177)
T PF09580_consen 74 QQLADRIANRVKKV----PGVEDATVVVTDDNAYVAVDLDFN-R---FNTKKIKKKVEKAVKSADPRIYNVYVSTDPD 143 (177)
T ss_pred HHHHHHHHHHHhcC----CCceEEEEEEECCEEEEEEEeccc-c---cchhHHHHHHHHHHHHhCCCccEEEEEcCHH
Confidence 45566777777665 455778888889999988888832 2 2345788999999985 79999999988875
No 28
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=68.82 E-value=24 Score=29.44 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=39.9
Q ss_pred HHHHhhCCCCCH-----HHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEe
Q 015157 307 NAVSLVGQSASP-----EVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIEL 358 (412)
Q Consensus 307 ~~~~Llg~s~~~-----e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v 358 (412)
.+..|+|+..|+ |....|+..+..+ |.|.+|+++.+-+.|+.+.+.++|..
T Consensus 52 ele~lig~~~~~~~~~sEi~r~I~EaL~~d-~rI~~V~~f~f~~~~~~l~v~f~V~t 107 (112)
T PF10934_consen 52 ELEDLIGKNYPREYVESEIEREIEEALLQD-PRITSVENFSFEWEGDSLYVSFTVTT 107 (112)
T ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhcC-CCcceEEEEEEEEECCEEEEEEEEEE
Confidence 445678874443 4466677777777 99999999999999999988888765
No 29
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=68.42 E-value=2.3e+02 Score=32.76 Aligned_cols=44 Identities=25% Similarity=0.269 Sum_probs=39.0
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEEEEEEee
Q 015157 350 YFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFVHLDF 393 (412)
Q Consensus 350 ~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~~Vhvd~ 393 (412)
-.+.+++.+|++.+++++.++.+++|+.|++.|+|++++..+-.
T Consensus 559 ~~~~v~v~lp~Gtsle~t~~~~~~ve~~L~~~p~V~~v~s~vG~ 602 (1021)
T PF00873_consen 559 GEFYVSVELPPGTSLEETDAIVKQVEDILKEDPEVKSVSSRVGR 602 (1021)
T ss_dssp SEEEEEEEESTTC-HHHHHHHHHHHHHHHHTTTTEEEEEEEESE
T ss_pred CceEEEEeeccCchHHHHHHHHHHHHHHHHhhhhhhccceEecc
Confidence 35789999999999999999999999999999999999888754
No 30
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.15 E-value=19 Score=27.22 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEEEEEEee
Q 015157 317 SPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFVHLDF 393 (412)
Q Consensus 317 ~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~~Vhvd~ 393 (412)
.|.+..++.+.+.++. .++.+++....+..+...+.+.+|++.+.. ++.+.++..-+++ + +.++++|
T Consensus 9 rpGiv~~vt~~la~~~---~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~---~l~~~l~~l~~~l-~---l~i~~~~ 75 (75)
T cd04870 9 RPGLTSALTEVLAAHG---VRILDVGQAVIHGRLSLGILVQIPDSADSE---ALLKDLLFKAHEL-G---LQVRFEP 75 (75)
T ss_pred CCCHHHHHHHHHHHCC---CCEEecccEEEcCeeEEEEEEEcCCCCCHH---HHHHHHHHHHHHc-C---ceEEEeC
Confidence 4678999999999882 466777666667777778888888776543 3444554444332 3 3455543
No 31
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=67.90 E-value=30 Score=25.94 Aligned_cols=50 Identities=28% Similarity=0.400 Sum_probs=30.4
Q ss_pred ccceeEEEEeCCeEEEEEEEEeC-CCCCHHHHHHHHHHHHHHHHcCCCccEEEE
Q 015157 337 RVDTVRAYTFGVLYFVEVDIELP-EDLPLKEAHTIGESLQIKIEELPEVERAFV 389 (412)
Q Consensus 337 ~v~~vr~~~~G~~~~vev~I~v~-~~~~l~eah~I~~~lq~~L~~l~~v~~~~V 389 (412)
+..-++--...+ -.|.+.+.++ +..+ ....+.+++++.|+.+|++..|.|
T Consensus 22 ~~g~V~~i~i~~-~~V~v~l~l~~~~~~--~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 22 ELGMVRDISIEG-GKVSVSLELPTPACP--AAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp TTTSEEEEEECT-CEEEEEE--SSTTHT--THHHHHHHHHHHHHTSTT-SEEEE
T ss_pred HcCCeeEEEEEC-CEEEEEEEECCCCch--HHHHHHHHHHHHHHhCCCCceEeC
Confidence 334444444433 2345556665 4444 456899999999999999988765
No 32
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=62.31 E-value=51 Score=26.49 Aligned_cols=22 Identities=36% Similarity=0.761 Sum_probs=17.1
Q ss_pred EEEEEEEEeCCCCCHHHHHHHH
Q 015157 350 YFVEVDIELPEDLPLKEAHTIG 371 (412)
Q Consensus 350 ~~vev~I~v~~~~~l~eah~I~ 371 (412)
+.|++++.+|++|+.+++.++.
T Consensus 2 flV~m~V~~P~~~~~~~~~~i~ 23 (90)
T TIGR03221 2 FHVRMDVNLPVDMPAEKAAAIK 23 (90)
T ss_pred eEEEEEeeCCCCCCHHHHHHHH
Confidence 4578888888888888777664
No 33
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=57.28 E-value=92 Score=28.18 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhh-CCCc-------cccceeEEEEe-CCeEEEEEEEEeC-CCCCHHHHHHHHHHHHHHHHcCCCccEEE
Q 015157 319 EVLQKLTYLVIQH-HPQI-------KRVDTVRAYTF-GVLYFVEVDIELP-EDLPLKEAHTIGESLQIKIEELPEVERAF 388 (412)
Q Consensus 319 e~~~~I~~~~~~~-~~~V-------~~v~~vr~~~~-G~~~~vev~I~v~-~~~~l~eah~I~~~lq~~L~~l~~v~~~~ 388 (412)
...++|.+.+.+. +|++ .-|.++.+... +..-.|.+.+.++ +.++. ...+.+.++++|+.+|+++.+.
T Consensus 73 ~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c~~--~~~L~~dV~~aL~~l~gV~~V~ 150 (174)
T TIGR03406 73 DNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCGM--GPVLVEDVEDKVLAVPNVDEVE 150 (174)
T ss_pred ccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCCCcH--HHHHHHHHHHHHHhCCCceeEE
Confidence 3457777777776 3332 12334444331 0211255556664 33443 4578899999999999999988
Q ss_pred EEEeeccCCCC
Q 015157 389 VHLDFECDHKP 399 (412)
Q Consensus 389 Vhvd~~~~~~p 399 (412)
|.+.++..=.+
T Consensus 151 V~l~~dp~W~~ 161 (174)
T TIGR03406 151 VELVFDPPWSR 161 (174)
T ss_pred EEEEecCCCCh
Confidence 88876544333
No 34
>PRK14646 hypothetical protein; Provisional
Probab=51.43 E-value=94 Score=27.49 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhC-CCccccceeEEEEeCCeEEEEEEEEeCC--CCCHHHHHHHHHHHHHHHHc
Q 015157 319 EVLQKLTYLVIQHH-PQIKRVDTVRAYTFGVLYFVEVDIELPE--DLPLKEAHTIGESLQIKIEE 380 (412)
Q Consensus 319 e~~~~I~~~~~~~~-~~V~~v~~vr~~~~G~~~~vev~I~v~~--~~~l~eah~I~~~lq~~L~~ 380 (412)
+..++|+..+.... +.-..+.++...+.|...++.+.|.-+. ..+++++..+++.|...|..
T Consensus 4 ~~~~~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~ 68 (155)
T PRK14646 4 ENKSKLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIEN 68 (155)
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCc
Confidence 34445555544431 1125778888888888888888887653 49999999999999999964
No 35
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=51.16 E-value=62 Score=23.86 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEE
Q 015157 318 PEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERA 387 (412)
Q Consensus 318 ~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~ 387 (412)
|..+.+|..+..+. + ..++++.+......-...+.|+++.+- +..+.|.+.|+++++|.+|
T Consensus 3 ~GvL~Ri~~vf~rR--g-~nI~sl~v~~~~~~~~~riti~v~~~~------~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 3 PGVLNRITGVFRRR--G-FNIESLSVGPTEDPGISRITIVVSGDD------REIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp TTHHHHHHHHHHTT--T--EECEEEEEE-SSTTEEEEEEEEES-C------CHHHHHHHHHHCSTTEEEE
T ss_pred cHHHHHHHHHHhcC--C-eEEeeEEeeecCCCCEEEEEEEEeeCc------hhHHHHHHHHhccCCeEeC
Confidence 46788888888765 3 588999998866554556666666521 1335688889999998654
No 36
>PRK14647 hypothetical protein; Provisional
Probab=50.26 E-value=1e+02 Score=27.34 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=39.3
Q ss_pred cccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcC
Q 015157 336 KRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEEL 381 (412)
Q Consensus 336 ~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l 381 (412)
..+.++.+.+.|....+.|.|.-+...+++++..+++.|...|...
T Consensus 23 ~~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD~~ 68 (159)
T PRK14647 23 LELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDVE 68 (159)
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHccc
Confidence 5677888888888788888888778899999999999999999743
No 37
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.21 E-value=87 Score=23.39 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCC
Q 015157 317 SPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPED 361 (412)
Q Consensus 317 ~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~ 361 (412)
-|....++...+.++ . .+|++.++.+.+..+.+++-.+.+++
T Consensus 11 r~gLl~~i~~~l~~~-~--l~I~~A~i~T~~~~~v~D~F~v~~~~ 52 (73)
T cd04900 11 RPGLFARIAGALDQL-G--LNILDARIFTTRDGYALDTFVVLDPD 52 (73)
T ss_pred CCCHHHHHHHHHHHC-C--CCeEEeEEEEeCCCeEEEEEEEECCC
Confidence 356788899999888 2 68899999999776666666666654
No 38
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=49.48 E-value=80 Score=23.76 Aligned_cols=54 Identities=19% Similarity=0.418 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhhCCCccccceeEEEEeC------CeEEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 015157 317 SPEVLQKLTYLVIQHHPQIKRVDTVRAYTFG------VLYFVEVDIELPEDLPLKEAHTIGESLQI 376 (412)
Q Consensus 317 ~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G------~~~~vev~I~v~~~~~l~eah~I~~~lq~ 376 (412)
.|..+.+|.+.+.++. .+|.+++....+ ..++..+.+.+|++.+. .++.+.++.
T Consensus 9 ~~Giv~~it~~l~~~~---~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~---~~l~~~l~~ 68 (81)
T cd04869 9 RPGIVHEVTQFLAQRN---INIEDLSTETYSAPMSGTPLFKAQATLALPAGTDL---DALREELEE 68 (81)
T ss_pred CCCHHHHHHHHHHHcC---CCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCH---HHHHHHHHH
Confidence 4568899999999883 356666666655 45667888888866554 344455544
No 39
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=47.67 E-value=1.1e+02 Score=23.69 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEEEE
Q 015157 317 SPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFV 389 (412)
Q Consensus 317 ~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~~V 389 (412)
.|..+++|.....+. | -.|+++.+-.....-...+.+++..+ +..+.|.+.|+++++|.++.+
T Consensus 13 ~pGVL~Ri~~lf~rR--G-fnI~sl~v~~t~~~~~sriti~v~~~-------~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 13 RPEVLERVLRVVRHR--G-FQVCSMNMTQNTDAQNINIELTVASE-------RPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CccHHHHHHHHHhcC--C-eeeeeEEeeecCCCCEEEEEEEECCC-------chHHHHHHHHhcCcCeEEEEE
Confidence 467899999888766 3 57788887776554456677777533 344678888999999976654
No 40
>PRK11023 outer membrane lipoprotein; Provisional
Probab=47.59 E-value=34 Score=31.26 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=46.2
Q ss_pred HhhCCCCCHHHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHH--HHHHHHHHHHcCCCccEE
Q 015157 310 SLVGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHT--IGESLQIKIEELPEVERA 387 (412)
Q Consensus 310 ~Llg~s~~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~--I~~~lq~~L~~l~~v~~~ 387 (412)
.|.|..++++..++..+++.+. ++|++|++- +.+.-+.+. ....+| |..+++..|...+.+...
T Consensus 80 ~L~G~V~~~~~k~~A~~ia~~v-~GV~~V~N~------------l~V~~~~~~-~~~~~D~~It~kik~~L~~~~~v~~~ 145 (191)
T PRK11023 80 LLTGQSPNAELSERAKQIAMGV-EGVNEVYNE------------IRQGQPIGL-GTASKDTWITTKVRSQLLTSDSVKSS 145 (191)
T ss_pred EEEEEeCCHHHHHHHHHHHhcC-CCceeecce------------eeecccccc-ccccCcHHHHHHHHHHHhcCCCCCcc
Confidence 3788888888999999999999 999888762 222211111 112233 888999998765666655
Q ss_pred EEEEee
Q 015157 388 FVHLDF 393 (412)
Q Consensus 388 ~Vhvd~ 393 (412)
-|+++-
T Consensus 146 ~I~V~t 151 (191)
T PRK11023 146 NVKVTT 151 (191)
T ss_pred eEEEEE
Confidence 555553
No 41
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=46.94 E-value=1.7e+02 Score=24.44 Aligned_cols=76 Identities=25% Similarity=0.438 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhh-CCCccccceeEEEEeCCeEEEE-------EEEEe---CCCCCHHHHHHHHHHHHHHHHcCCCcc
Q 015157 317 SPEVLQKLTYLVIQH-HPQIKRVDTVRAYTFGVLYFVE-------VDIEL---PEDLPLKEAHTIGESLQIKIEELPEVE 385 (412)
Q Consensus 317 ~~e~~~~I~~~~~~~-~~~V~~v~~vr~~~~G~~~~ve-------v~I~v---~~~~~l~eah~I~~~lq~~L~~l~~v~ 385 (412)
..+..++|...+.+. +|.+ .++ ++.+|--|-++ ++|.+ .+.+|+ +..+.+++++++++.++++
T Consensus 10 ~~~~~~~i~~aL~~V~DPEi-~id---IvdLGLVy~v~i~~~~~~v~v~mtlT~~gCP~--~~~i~~~v~~al~~~~~v~ 83 (111)
T COG2151 10 IKVTLEDILEALKTVIDPEI-GID---IVDLGLVYEVDIDDVDGLVKVKMTLTSPGCPL--AEVIADQVEAALEEIPGVE 83 (111)
T ss_pred hhhhHHHHHHHhhcCCCccc-cee---eEeeccEEEEEEecCCceEEEEEecCCCCCCc--cHHHHHHHHHHHHhcCCcc
Confidence 455677788888777 3443 222 34444333222 22333 245665 4689999999999999999
Q ss_pred EEEEEEeeccCCC
Q 015157 386 RAFVHLDFECDHK 398 (412)
Q Consensus 386 ~~~Vhvd~~~~~~ 398 (412)
.+.|++..+..-.
T Consensus 84 ~v~V~l~~~p~Wt 96 (111)
T COG2151 84 DVEVELTLSPPWT 96 (111)
T ss_pred eEEEEEEEcCCCc
Confidence 9999988765333
No 42
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=46.82 E-value=1.5e+02 Score=23.65 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=33.9
Q ss_pred EEEEEEeC-CCCCHHHHHHHHHHHHHHHHcCCCccEEEEEEeeccCCCCccc
Q 015157 352 VEVDIELP-EDLPLKEAHTIGESLQIKIEELPEVERAFVHLDFECDHKPEHS 402 (412)
Q Consensus 352 vev~I~v~-~~~~l~eah~I~~~lq~~L~~l~~v~~~~Vhvd~~~~~~peh~ 402 (412)
+.+.+.++ +..+. ...+.+.+++.|..+|+++.+.|.++....-.|+|.
T Consensus 39 v~i~l~l~~p~~~~--~~~l~~~i~~al~~l~gv~~v~v~i~~~~~~~~~~~ 88 (99)
T TIGR02945 39 VDIQMTLTAPNCPV--AGSMPGEVENAVRAVPGVGSVTVELVWDPPWTPERM 88 (99)
T ss_pred EEEEEEECCCCCCh--HHHHHHHHHHHHHhCCCCceEEEEEEeeCCCChHHC
Confidence 44555554 23343 345888999999999999998888887666555553
No 43
>PHA02975 hypothetical protein; Provisional
Probab=46.30 E-value=1.1e+02 Score=23.23 Aligned_cols=33 Identities=3% Similarity=0.199 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHH--HHHHHHHHHHHhhcCCCC
Q 015157 184 QPVGIIIFAAVMATL--GFQVLVQAVEQLIKDEPS 216 (412)
Q Consensus 184 E~l~~li~~~~m~~~--~~~vl~esi~~Li~~~~~ 216 (412)
|-+.+-++|+||-.. -+.=+.+.++..+++...
T Consensus 2 dKLYaaiFGvFmsS~DdDF~nFI~vVksVLtdk~~ 36 (69)
T PHA02975 2 EKLFTGTYGVFLESNDSDFEDFIDTIMHVLTGKKE 36 (69)
T ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHcCCCC
Confidence 445566777776533 255567788888877633
No 44
>PRK14640 hypothetical protein; Provisional
Probab=45.82 E-value=1.2e+02 Score=26.73 Aligned_cols=46 Identities=7% Similarity=0.026 Sum_probs=38.8
Q ss_pred cccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcC
Q 015157 336 KRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEEL 381 (412)
Q Consensus 336 ~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l 381 (412)
..+.++...+.|....+.+.|.-+...+++++..+++.|...|...
T Consensus 21 ~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~~ 66 (152)
T PRK14640 21 FELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVE 66 (152)
T ss_pred CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 4678888888888777888887777799999999999999999753
No 45
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.65 E-value=33 Score=28.44 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCCccEEEEEEeeccCCC
Q 015157 363 PLKEAHTIGESLQIKIEELPEVERAFVHLDFECDHK 398 (412)
Q Consensus 363 ~l~eah~I~~~lq~~L~~l~~v~~~~Vhvd~~~~~~ 398 (412)
+...+..+...|++.+...|.|+++-||+|++....
T Consensus 35 s~~~a~~le~aI~esi~~QP~v~daeV~Id~~~~K~ 70 (116)
T COG2098 35 SPGTAESLEKAIEESIKVQPFVEDAEVKIDRDKEKL 70 (116)
T ss_pred CccchHHHHHHHHHHHhcCCceeeEEEEeccccccc
Confidence 444566777888888888899999999999875443
No 46
>PRK10263 DNA translocase FtsK; Provisional
Probab=44.87 E-value=6.2e+02 Score=30.33 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 015157 268 VVGLIAAVLGDEFYWWIDPVGAILLAIYTI 297 (412)
Q Consensus 268 ~~~lv~~~l~~~~~~~~Dpi~aiiIa~~ii 297 (412)
.+|+++.+++..+.+++-.+|+.++.++++
T Consensus 142 gGGIIG~lLs~lL~~LfG~vGa~LILLlll 171 (1355)
T PRK10263 142 SGGVIGSLLSTTLQPLLHSSGGTIALLCVW 171 (1355)
T ss_pred ccchHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456666666655555555555555544433
No 47
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=44.49 E-value=1.6e+02 Score=23.57 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=42.9
Q ss_pred hCCCCCHHHHHHHHHHHHhhCCCccccceeEEEEe--CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccE
Q 015157 312 VGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTF--GVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVER 386 (412)
Q Consensus 312 lg~s~~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~--G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~ 386 (412)
+| .+.|++.+.+.+++.++.|+ ....++-.+.+ |...-|.+.|... ..++ .|.+-+.|.+.+.|..
T Consensus 21 mG-~a~~~l~~~vv~vvqr~ap~-~~~~~~~~k~SSkGnY~svsI~i~A~---~~EQ----~e~ly~eL~~~~~Vkm 88 (90)
T COG2921 21 MG-AAGPELEDQVVEVVQRHAPG-DYTPRVSWKPSSKGNYLSVSITIRAT---NIEQ----VEALYRELRKHEIVKM 88 (90)
T ss_pred hc-ccchhHHHHHHHHHHHHCCc-ccCceeeeccCCCCceEEEEEEEEEC---CHHH----HHHHHHHHhhCCceEE
Confidence 55 45889999999999999665 34455544555 4344477777663 3333 3456677777777654
No 48
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=44.31 E-value=2.3e+02 Score=30.07 Aligned_cols=111 Identities=12% Similarity=0.057 Sum_probs=53.0
Q ss_pred CCCCcccccccccccccccchhhh--hhccchhhhcCCCCCCcccccccccccchhhhHHHHHHHHHhhhhHHhhhhhhc
Q 015157 21 GGNINEYGRERCCRNSVASLKCDF--FSKLPEKVRSGLDPETPFHLDLSKTTGLIEGEKEYYEKQFATLKSFEEVDSLVS 98 (412)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fy~~q~~~l~~~~~~~~~~~ 98 (412)
-.|.+....+ +|+...+..+.+| +..|.+|+.-.+ ...++|.-.|-..+.+++|..+-...|++=++..+.++
T Consensus 69 i~r~~If~~l-s~~~eyg~~~~~f~kI~~L~~~Wgy~~----a~Ac~~iA~k~~~~~l~dfL~Rla~ai~sGe~~~eFl~ 143 (527)
T COG1955 69 IPRDDIFRIL-SRKEEYGPLRKEFRKIYNLVDKWGYSL----AEACRFIAKKTPSEILADFLDRLAYALDSGEDLKEFLE 143 (527)
T ss_pred CCHHHHHHHh-cchhhhhhHHHHHHHHHHHHHHhCcch----HHHHHHHHhhCcHHHHHHHHHHHHHhhhcCCcHHHHHH
Confidence 3343444555 5666677766666 444555554222 11233322233345566777776665555444444433
Q ss_pred cCccCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015157 99 NNAIDEE-------KYLQEQVQHERAMNISNWANIFLLAFKIYAT 136 (412)
Q Consensus 99 ~~~~~~~-------~~~~~~~~~~~al~isi~~N~~l~~~k~~~~ 136 (412)
++..... +..-+.-+.-+-++.++.+.+.+.+.-+...
T Consensus 144 ~E~~~~~~~y~~~Yer~LeSl~~~~diY~sll~S~tf~v~~i~i~ 188 (527)
T COG1955 144 REQDTTMDEYETEYERALESLDVWKDIYVSLLVSLTFLVAFILIL 188 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211100 0011122223456677777766666655543
No 49
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=44.03 E-value=95 Score=23.45 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhCCCccccceeEEEEe--CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEE
Q 015157 318 PEVLQKLTYLVIQHHPQIKRVDTVRAYTF--GVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERA 387 (412)
Q Consensus 318 ~e~~~~I~~~~~~~~~~V~~v~~vr~~~~--G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~ 387 (412)
+..+..|...+.+. + ..|.++.+... +....+.+.+.+.. .++ -+.+-++|+++|+|.+|
T Consensus 17 ~GlL~dI~~~i~~~--~-~nI~~i~~~~~~~~~~~~~~l~v~V~d---~~~----L~~ii~~L~~i~~V~~V 78 (80)
T PF13291_consen 17 PGLLADITSVISEN--G-VNIRSINARTNKDDGTARITLTVEVKD---LEH----LNQIIRKLRQIPGVISV 78 (80)
T ss_dssp TTHHHHHHHHHHCS--S-SEEEEEEEEE--ETTEEEEEEEEEESS---HHH----HHHHHHHHCTSTTEEEE
T ss_pred CCHHHHHHHHHHHC--C-CCeEEEEeEEeccCCEEEEEEEEEECC---HHH----HHHHHHHHHCCCCeeEE
Confidence 46788899888876 2 57788888885 45677899999962 233 24566778889998765
No 50
>PRK00907 hypothetical protein; Provisional
Probab=42.18 E-value=1.6e+02 Score=23.64 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=44.6
Q ss_pred hhCCCCCHHHHHHHHHHHHhhCCCccccceeEEEEe--CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccE
Q 015157 311 LVGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTF--GVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVER 386 (412)
Q Consensus 311 Llg~s~~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~--G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~ 386 (412)
.+|. +.+++.+.|..++.+|.|+. +-.++..+.+ |...-+.+.|.+.. -++ .+.|-+.|.+.|.|..
T Consensus 22 VmG~-a~~~l~~~V~~vv~~h~p~~-~~~~i~~r~Ss~GkY~Svtv~i~ats---~eQ----ld~iY~~L~~~~~Vkm 90 (92)
T PRK00907 22 AMGT-AERGLETELPRLLAATGVEL-LQERISWKHSSSGKYVSVRIGFRAES---REQ----YDAAHQALRDHPEVKW 90 (92)
T ss_pred EEEc-CchhHHHHHHHHHHHhCCCC-CcCcEEeccCCCCEEEEEEEEEEECC---HHH----HHHHHHHHhhCCCEEE
Confidence 4564 47899999999999996653 3455655665 44445777777753 223 3566777888888743
No 51
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=41.11 E-value=1.2e+02 Score=30.86 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=51.6
Q ss_pred HhhcCHHHHHhHHHhhhhHHHHHHHHHHHHHHhh--------hhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHhhCC
Q 015157 246 RSSGNKIVRAYAKDHYFDVVTNVVGLIAAVLGDE--------FYWWIDPVGAILLAIYTITNWSGTVQENAVSLVGQ 314 (412)
Q Consensus 246 ~~~~s~~l~a~a~~~~~Dvi~~~~~lv~~~l~~~--------~~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~ 314 (412)
+..+|-.+.++|.|...|+..-..++.+.++..+ +|.=+|.+||++=.+.|-.....++++++..++-.
T Consensus 94 ~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~~IW~~tgvLV~~Ai~Rl~s~ 170 (379)
T KOG1482|consen 94 YKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLSG 170 (379)
T ss_pred eeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcC
Confidence 5556778899999999999988888887777643 24457888887666666666677888888887764
No 52
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=40.27 E-value=1.1e+02 Score=22.54 Aligned_cols=48 Identities=21% Similarity=0.365 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 015157 187 GIIIFAAVMATLGFQV---LVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGIKL 239 (412)
Q Consensus 187 ~~li~~~~m~~~~~~v---l~esi~~Li~~~~~~~~~~~~~~~~i~i~~ia~vv~~ 239 (412)
+-++.|++++..+.+. +.+.+.+.+++++++ ...|.++..+++.++.+
T Consensus 6 ~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~-----~t~~~ligG~va~ivGl 56 (59)
T PF11381_consen 6 ALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPTD-----KTIWYLIGGAVAVIVGL 56 (59)
T ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCc-----hhHHHHHhHHHHHHHHH
Confidence 4456666666666554 444577788887763 34566655556555543
No 53
>PRK14634 hypothetical protein; Provisional
Probab=40.14 E-value=1.8e+02 Score=25.74 Aligned_cols=49 Identities=10% Similarity=0.088 Sum_probs=40.3
Q ss_pred cccceeEEEEeCCeEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHHcCCCc
Q 015157 336 KRVDTVRAYTFGVLYFVEVDIELPED--LPLKEAHTIGESLQIKIEELPEV 384 (412)
Q Consensus 336 ~~v~~vr~~~~G~~~~vev~I~v~~~--~~l~eah~I~~~lq~~L~~l~~v 384 (412)
..+.++.+.+.|....+.|.|.-+.. .+++++..+++.|...|...+.+
T Consensus 22 ~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~d~i 72 (155)
T PRK14634 22 FELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEASQLL 72 (155)
T ss_pred CEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcccccC
Confidence 46788888888888888888887766 99999999999999999754333
No 54
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=39.87 E-value=6.7e+02 Score=29.25 Aligned_cols=43 Identities=9% Similarity=0.103 Sum_probs=37.1
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEEEEEEe
Q 015157 350 YFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFVHLD 392 (412)
Q Consensus 350 ~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~~Vhvd 392 (412)
-.+.+++.+|++.+++++.++.+++++.+++.|+|+.++.-+-
T Consensus 568 ~~i~v~~~~p~gt~l~~t~~~~~~ve~~l~~~~~v~~~~~~~G 610 (1040)
T PRK10503 568 GIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVG 610 (1040)
T ss_pred cEEEEEEECCCCCCHHHHHHHHHHHHHHHhhCCCeEEEEEEec
Confidence 4468899999999999999999999999988898888776654
No 55
>PRK14638 hypothetical protein; Provisional
Probab=39.21 E-value=1.8e+02 Score=25.60 Aligned_cols=45 Identities=7% Similarity=0.140 Sum_probs=37.8
Q ss_pred cccceeEEEEeCCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHHc
Q 015157 336 KRVDTVRAYTFGVLYFVEVDIELPED-LPLKEAHTIGESLQIKIEE 380 (412)
Q Consensus 336 ~~v~~vr~~~~G~~~~vev~I~v~~~-~~l~eah~I~~~lq~~L~~ 380 (412)
..+.++...+.|....+.|.|.-+.. .+++++..+++.|...|..
T Consensus 23 ~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~ 68 (150)
T PRK14638 23 LEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDR 68 (150)
T ss_pred CEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhcc
Confidence 57778888888888888888876654 9999999999999999974
No 56
>COG1302 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.00 E-value=2.5e+02 Score=24.16 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=53.1
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhhCCCccccceeEEEEe-CCeEEEEEEEEeCCCCCHH-HHHHHHHHHHHHHHcC
Q 015157 304 VQENAVSLVGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTF-GVLYFVEVDIELPEDLPLK-EAHTIGESLQIKIEEL 381 (412)
Q Consensus 304 ~~e~~~~Llg~s~~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~-G~~~~vev~I~v~~~~~l~-eah~I~~~lq~~L~~l 381 (412)
..+.+..+.|-. + .+.+.+...+ +. +.+. +.+.+..- +....+++.+.+.-..++. -|+.|.+.++..++.+
T Consensus 26 a~~ev~Gv~~m~-~-~~~~~~~e~l-~~-~n~~--kGV~Ve~~~~~~v~VDvyi~v~YGv~IpeVa~~Iq~~V~~~v~~m 99 (131)
T COG1302 26 AAEEVEGVVGMA-G-GFKDGLTEKL-GK-ENVT--KGVKVEVGEDQSVAVDVYIIVEYGVKIPEVAENIQERVKEEVENM 99 (131)
T ss_pred HHHHcCCeeecc-c-hhhhhHHHHh-Cc-cccC--CCeEEEecCCCcEEEEEEEEEecCCchHHHHHHHHHHHHHHHHHh
Confidence 334455555532 2 2556666666 32 2221 34556553 4458899999998776664 4777888888888754
Q ss_pred C--CccEEEEEEeeccC
Q 015157 382 P--EVERAFVHLDFECD 396 (412)
Q Consensus 382 ~--~v~~~~Vhvd~~~~ 396 (412)
- .+..+.||+.--+.
T Consensus 100 tgl~v~~VNV~V~gV~~ 116 (131)
T COG1302 100 TGLKVVEVNVHVVGVKV 116 (131)
T ss_pred hCCceEEEEEEEEEeEe
Confidence 3 46678888864443
No 57
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=37.36 E-value=1.6e+02 Score=22.16 Aligned_cols=40 Identities=15% Similarity=0.344 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeC
Q 015157 317 SPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELP 359 (412)
Q Consensus 317 ~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~ 359 (412)
.|.....+...+.++ . -++-+++....|..+...+.+..+
T Consensus 12 rpGiv~~v~~~l~~~-g--~ni~d~~~~~~~~~f~~~~~v~~~ 51 (76)
T PF13740_consen 12 RPGIVAAVTGVLAEH-G--CNIEDSRQAVLGGRFTLIMLVSIP 51 (76)
T ss_dssp -TTHHHHHHHHHHCT-T---EEEEEEEEEETTEEEEEEEEEES
T ss_pred CCcHHHHHHHHHHHC-C--CcEEEEEEEEEcCeEEEEEEEEeC
Confidence 467889999999988 3 588899999999998888999888
No 58
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=37.18 E-value=1.1e+02 Score=26.42 Aligned_cols=47 Identities=15% Similarity=0.096 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHH---HHhHHHHHHHHHHHHHHHHH
Q 015157 118 MNISNWANIFLLAFKIYATIQSGSLAI---AASTLDSLLDLMAGGILWIT 164 (412)
Q Consensus 118 l~isi~~N~~l~~~k~~~~~~sgS~aL---~adaldsl~D~~s~~i~l~~ 164 (412)
-.+++++|++++++-.+++.+..+... ...+..-++.++.+++++++
T Consensus 77 ~qls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvA 126 (142)
T PF11712_consen 77 RQLSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVA 126 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 356778888888877666554333322 34455555555555554444
No 59
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=36.79 E-value=95 Score=33.07 Aligned_cols=63 Identities=25% Similarity=0.274 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHH---cCCCccEEEEE
Q 015157 321 LQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIE---ELPEVERAFVH 390 (412)
Q Consensus 321 ~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~---~l~~v~~~~Vh 390 (412)
++.+..++..+ +|| ....+-+.|+.+-|-|. |...+-.++..++.+|.++|+ .+|+--.|+|-
T Consensus 439 l~~le~i~~~~-~gv---~~~~aiqaGreirv~v~---~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtvi 504 (514)
T TIGR03319 439 LEKLEEIANSF-EGV---EKSYAIQAGREIRVMVK---PEKISDDQAVVLARDIAKKIEEELEYPGQIKVTVI 504 (514)
T ss_pred HHHHHHHHHhC-CCc---hhhhhhhcCcEEEEEec---CCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 55677888887 666 44556677986554333 444777788888888888886 37887677764
No 60
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=36.36 E-value=2.5e+02 Score=24.64 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcC
Q 015157 320 VLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEEL 381 (412)
Q Consensus 320 ~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l 381 (412)
+.+.+..++... + ..+.++.+...|....+.|.|.-+...+++++..+.+.+...|...
T Consensus 9 i~~~~~~~~~~~--g-~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~ 67 (154)
T PRK00092 9 LTELIEPVVEAL--G-YELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVE 67 (154)
T ss_pred HHHHHHHHHHHC--C-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 344445555544 2 4678888888888888888888777799999999999999999743
No 61
>PRK14632 hypothetical protein; Provisional
Probab=36.08 E-value=1.8e+02 Score=26.13 Aligned_cols=57 Identities=9% Similarity=0.082 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcC
Q 015157 321 LQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEEL 381 (412)
Q Consensus 321 ~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l 381 (412)
.+.++.++.+. + ..+.++.+.. |....+.|.|.=+...+++++..+++.|...|...
T Consensus 11 ~~li~pv~~~~--G-~eLvdve~~~-~~~~~lrV~ID~~~GV~ldDC~~vSr~is~~LD~~ 67 (172)
T PRK14632 11 ADMAGPFLASL--G-LELWGIELSY-GGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALEVE 67 (172)
T ss_pred HHHHHHHHHHC--C-CEEEEEEEEe-CCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 33344444443 2 4666777554 66677888887777799999999999999999743
No 62
>PRK14633 hypothetical protein; Provisional
Probab=34.69 E-value=2.8e+02 Score=24.29 Aligned_cols=58 Identities=3% Similarity=0.074 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcC
Q 015157 320 VLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEEL 381 (412)
Q Consensus 320 ~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l 381 (412)
+.+.+..++... | ..+.++.....|. ..+.|.|.-+...+++++..+++.|...|...
T Consensus 6 i~~lv~p~~~~~--G-~eL~dve~~~~~~-~~lrV~ID~~~Gv~lddC~~vSr~i~~~LD~~ 63 (150)
T PRK14633 6 LYEIVEPITADL--G-YILWGIEVVGSGK-LTIRIFIDHENGVSVDDCQIVSKEISAVFDVE 63 (150)
T ss_pred HHHHHHHHHHHC--C-CEEEEEEEEeCCC-cEEEEEEeCCCCCCHHHHHHHHHHHHHHhccC
Confidence 334444444443 3 4667777776666 47788887777899999999999999999753
No 63
>COG2056 Predicted permease [General function prediction only]
Probab=34.60 E-value=1.8e+02 Score=29.65 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCccch
Q 015157 113 QHERAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMK-NINIYKYPIGKLR 182 (412)
Q Consensus 113 ~~~~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~-~~~~~~~P~G~~R 182 (412)
.+++..|+++..-++-++.|++. .++|+-+- .+.+++.++..+..+ |..++.+.-|..-
T Consensus 237 ~~~~~~~~alvaiv~af~vQl~~--~~~smilg---------al~gliv~~~~gv~~~ke~d~~~~~G~km 296 (444)
T COG2056 237 LEEYKLALALVAIVVAFAVQLLT--FTDSMILG---------ALAGLIVFFLSGVIKWKETDDVFTEGVKM 296 (444)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHh--ccccchHH---------HHHHHHHHHHhcceehhhhHHHHHhhHHH
Confidence 33477777877777778888876 67777554 344444444433333 2223455544443
No 64
>PRK02047 hypothetical protein; Provisional
Probab=34.56 E-value=2.4e+02 Score=22.52 Aligned_cols=66 Identities=15% Similarity=0.255 Sum_probs=42.7
Q ss_pred hCCCCCHHHHHHHHHHHHhhCCCccccceeEEEEe--CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccE
Q 015157 312 VGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTF--GVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVER 386 (412)
Q Consensus 312 lg~s~~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~--G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~ 386 (412)
+|. ..+++.+.|.+++..+.++ .+-.++..+.+ |...-+.+.+.+.. -++ .+.|-+.|.+.|.|..
T Consensus 22 IG~-~~~~~~~~v~~iv~~~~~~-~~~~~i~~k~Ss~GkY~Svtv~v~v~s---~eq----~~~iY~~L~~~~~Vk~ 89 (91)
T PRK02047 22 MGK-AHPEFADTIFKVVSVHDPE-FDLEKIEERPSSGGNYTGLTITVRATS---REQ----LDNIYRALTGHPMVKV 89 (91)
T ss_pred EEe-CcHhHHHHHHHHHHHhCCC-CccCceEEccCCCCeEEEEEEEEEECC---HHH----HHHHHHHHhhCCCEEE
Confidence 443 3677899999999998444 33455666666 44445777777753 223 4566677777888744
No 65
>PRK00106 hypothetical protein; Provisional
Probab=34.43 E-value=87 Score=33.52 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHH---cCCCccEEEEE
Q 015157 321 LQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPED-LPLKEAHTIGESLQIKIE---ELPEVERAFVH 390 (412)
Q Consensus 321 ~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~-~~l~eah~I~~~lq~~L~---~l~~v~~~~Vh 390 (412)
+++++.++.++ +|| ....+-+.|+.+-| .|+|+ .+-.++..++.+|.++|+ .+|+--.|+|-
T Consensus 460 l~~lE~ia~~~-~gV---~~~yaiqaGREiRv----iV~p~~v~D~~~~~la~~ia~~Ie~~~~yPG~ikvtvi 525 (535)
T PRK00106 460 LRDLEEIANSF-DGV---QNSFALQAGREIRI----MVQPEKISDDQVTILAHKVREKIENNLDYPGNIKVTVI 525 (535)
T ss_pred HHHHHHHHhcC-CcH---HHHHHHhcCCeEEE----EecCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 67788888888 776 45566667986554 44444 677788888888888886 37887676664
No 66
>PF00368 HMG-CoA_red: Hydroxymethylglutaryl-coenzyme A reductase; InterPro: IPR002202 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase. There are two distinct classes of hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase enzymes: class I consists of eukaryotic and most archaeal enzymes (1.1.1.34 from EC), while class II consists of prokaryotic enzymes (1.1.1.88 from EC) [, ]. Class I HMG-CoA reductases catalyse the NADP-dependent synthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). In vertebrates, membrane-bound HMG-CoA reductase is the rate-limiting enzyme in the biosynthesis of cholesterol and other isoprenoids. In plants, mevalonate is the precursor of all isoprenoid compounds []. The reduction of HMG-CoA to mevalonate is regulated by feedback inhibition by sterols and non-sterol metabolites derived from mevalonate, including cholesterol. In archaea, HMG-CoA reductase is a cytoplasmic enzyme involved in the biosynthesis of the isoprenoids side chains of lipids []. Class I HMG-CoA reductases consist of an N-terminal membrane domain (lacking in archaeal enzymes), and a C-terminal catalytic region. The catalytic region can be subdivided into three domains: an N-domain (N-terminal), a large L-domain, and a small S-domain (inserted within the L-domain). The L-domain binds the substrate, while the S-domain binds NADP. Class II HMG-CoA reductases catalyse the reverse reaction of class I enzymes, namely the NAD-dependent synthesis of HMG-CoA from mevalonate and CoA []. Some bacteria, such as Pseudomonas mevalonii, can use mevalonate as the sole carbon source. Class II enzymes lack a membrane domain. Their catalytic region is structurally related to that of class I enzymes, but it consists of only two domains: a large L-domain and a small S-domain (inserted within the L-domain). As with class I enzymes, the L-domain binds substrate, but the S-domain binds NAD (instead of NADP in class I).; GO: 0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity, 0050662 coenzyme binding, 0015936 coenzyme A metabolic process, 0055114 oxidation-reduction process; PDB: 2Q6B_C 2Q6C_D 1HWI_C 1HWJ_C 3CD5_B 2R4F_C 1HWL_B 1HWK_C 1DQA_B 3CCT_D ....
Probab=33.77 E-value=3.5e+02 Score=27.58 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHc-CCCccEEEEEEeeccCCC
Q 015157 320 VLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEE-LPEVERAFVHLDFECDHK 398 (412)
Q Consensus 320 ~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~-l~~v~~~~Vhvd~~~~~~ 398 (412)
..+.|.+.+... ..--.+.++..+..|+.+++.+++..-.-|=---.....+.+-..|++ .++.....+.-.+..+-|
T Consensus 124 ~~~~l~~~a~~~-sr~ggl~~i~~~~~g~~v~l~~~~dtgDAMGaNmvn~~~e~v~~~i~~~~~~~~~~~I~sN~~~dKK 202 (373)
T PF00368_consen 124 NFEELKEIANST-SRGGGLRDIEVRIVGRFVHLRFHYDTGDAMGANMVNTATEAVCPWIEEQFGGMVLMSILSNLCTDKK 202 (373)
T ss_dssp THHHHHHHHHHH-CCTEEEEEEEEEECSTEEEEEEEEEETTC--HHHHHHHHHHHHHHHHHHHTSEEEEEEE-SSSCCSS
T ss_pred HHHHHHHhhhhc-CCceeeeEEEEEecCCEEEEEEEEEccccchhhHHHHHHHHHHHHHHHhcccceEEeeecccchhhh
Confidence 344555555555 455678888888889999999999997666544455566666666653 466666677777777777
Q ss_pred Cccc
Q 015157 399 PEHS 402 (412)
Q Consensus 399 peh~ 402 (412)
|...
T Consensus 203 ~s~~ 206 (373)
T PF00368_consen 203 PSAI 206 (373)
T ss_dssp --HH
T ss_pred hhhh
Confidence 7654
No 67
>PRK12704 phosphodiesterase; Provisional
Probab=33.66 E-value=94 Score=33.14 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHH---cCCCccEEEEE
Q 015157 321 LQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPED-LPLKEAHTIGESLQIKIE---ELPEVERAFVH 390 (412)
Q Consensus 321 ~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~-~~l~eah~I~~~lq~~L~---~l~~v~~~~Vh 390 (412)
++++..+..++ +||.+ ..+-+.|+.+- |.|+|+ .+-.+++.++.+|.++|+ .+|+--.|+|-
T Consensus 445 l~~le~i~~~~-~gv~~---~yaiqaGreir----v~v~~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtvi 510 (520)
T PRK12704 445 LEKLEEIANSF-EGVEK---AYAIQAGREIR----VIVKPDKVDDLQAVRLARDIAKKIEEELQYPGQIKVTVI 510 (520)
T ss_pred HHHHHHHHHhC-CcHHH---HHHHhcCceEE----EEeCCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 66778888888 77654 44556688554 445444 777788888888888886 38987777764
No 68
>PRK00341 hypothetical protein; Provisional
Probab=32.85 E-value=2.5e+02 Score=22.44 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=42.1
Q ss_pred hhCCCCCHHHHHHHHHHHHhhCCCccccceeEEEEe--CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCcc
Q 015157 311 LVGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTF--GVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVE 385 (412)
Q Consensus 311 Llg~s~~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~--G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~ 385 (412)
.+|. +.+++.+.|.+++.++. .+ +..++..+.+ |...-+.+.+.+.. -+ -.+.+-+.|.+.|.|.
T Consensus 22 ViG~-~~~~~~~~V~~iv~~~~-~~-~~~~~~~k~Ss~GkY~S~tv~i~~~s---~~----q~~~iy~~L~~~~~V~ 88 (91)
T PRK00341 22 VIGD-TGVGFKDLVIEILQKHA-DV-DLSTLAERQSSNGKYTTVQLHIVATD---ED----QLQDINSALRATGRVH 88 (91)
T ss_pred EEEc-CchhHHHHHHHHHHHhC-CC-cccceeeccCCCCEEEEEEEEEEECC---HH----HHHHHHHHHhhCCCEE
Confidence 3553 47889999999999883 32 3455555655 33344777777753 22 2456777788888874
No 69
>PLN02601 beta-carotene hydroxylase
Probab=32.80 E-value=3.6e+02 Score=26.31 Aligned_cols=21 Identities=24% Similarity=-0.122 Sum_probs=13.0
Q ss_pred HhhhhHHHHHHHHHHHHHHhh
Q 015157 259 DHYFDVVTNVVGLIAAVLGDE 279 (412)
Q Consensus 259 ~~~~Dvi~~~~~lv~~~l~~~ 279 (412)
.-+||++.-+.++.+..+..+
T Consensus 178 FE~NDlFaVifAvpAIaL~~~ 198 (303)
T PLN02601 178 FELNDVFAIVNAVPAIGLLYY 198 (303)
T ss_pred cccccchhhhhHHHHHHHHHH
Confidence 346898887766665544433
No 70
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=32.76 E-value=1.7e+02 Score=22.25 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=20.6
Q ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 015157 171 INIYKYPIGKLRMQPVGIIIFAAVMATLGFQ 201 (412)
Q Consensus 171 ~~~~~~P~G~~R~E~l~~li~~~~m~~~~~~ 201 (412)
....++..+..++|.+-.++=++++++.++-
T Consensus 50 ~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~p 80 (84)
T PF02790_consen 50 KFPNKFFNHNNKLEIIWTIIPAIILLFLAFP 80 (84)
T ss_dssp SSS--S---SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhhHHHHHHHHHHHhh
Confidence 3335677778889999999999888877764
No 71
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.63 E-value=83 Score=24.46 Aligned_cols=54 Identities=7% Similarity=0.163 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCC-CCCHHHHHHHHHHHHH
Q 015157 317 SPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPE-DLPLKEAHTIGESLQI 376 (412)
Q Consensus 317 ~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~-~~~l~eah~I~~~lq~ 376 (412)
.|.++.+|.+.+.++.- +|.+++....+..++..+.+.+|+ +.+.. ++.+.++.
T Consensus 11 ~pGiva~vt~~la~~g~---nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~---~L~~~l~~ 65 (88)
T cd04872 11 RVGIVAGVSTKLAELNV---NILDISQTIMDGYFTMIMIVDISESNLDFA---ELQEELEE 65 (88)
T ss_pred CCCHHHHHHHHHHHcCC---CEEechhHhhCCccEEEEEEEeCCCCCCHH---HHHHHHHH
Confidence 46789999999999833 444444444567777888888875 45442 34444444
No 72
>PRK14635 hypothetical protein; Provisional
Probab=30.77 E-value=3.8e+02 Score=23.75 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=36.7
Q ss_pred cccceeEEEEeCCeEEEEEEEEe----CCCCCHHHHHHHHHHHHHHHHc
Q 015157 336 KRVDTVRAYTFGVLYFVEVDIEL----PEDLPLKEAHTIGESLQIKIEE 380 (412)
Q Consensus 336 ~~v~~vr~~~~G~~~~vev~I~v----~~~~~l~eah~I~~~lq~~L~~ 380 (412)
..+.++.+.+.|....+.|.|.- ++..+++++..+++.+...|..
T Consensus 20 ~el~dve~~~~~~~~~lrV~ID~~~~~~~gv~lddC~~vSr~is~~LD~ 68 (162)
T PRK14635 20 VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELER 68 (162)
T ss_pred CEEEEEEEEecCCCcEEEEEEecCCCCCCCcCHHHHHHHHHHHHHHhCC
Confidence 56778888888888888888864 2459999999999999999974
No 73
>COG4331 Predicted membrane protein [Function unknown]
Probab=30.77 E-value=2.3e+02 Score=24.85 Aligned_cols=51 Identities=14% Similarity=0.288 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHhhc
Q 015157 116 RAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMK 169 (412)
Q Consensus 116 ~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~~~~~~ 169 (412)
|+--+++++-..+.+.|++-...+||++++. -+..|++.-++.|.-+|..|
T Consensus 107 waYPlsi~vl~lFI~YQlyr~~~t~Si~liv---lti~Dv~viiLtllEYR~lk 157 (167)
T COG4331 107 WAYPLSILVLVLFILYQLYRFFNTGSISLIV---LTIFDVFVIILTLLEYRLLK 157 (167)
T ss_pred hhccHHHHHHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4444577777888899999999999999985 67889998888888776544
No 74
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=28.99 E-value=5.1e+02 Score=24.60 Aligned_cols=82 Identities=17% Similarity=0.037 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHhHHHhhhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 015157 229 AIMLSATGIKLALWFYCRSSGNKIVRAYAKDHYFDVVTNVVGLIAAVLGDEFYWWIDPVGAILLAIYTITNWSGTVQENA 308 (412)
Q Consensus 229 ~i~~ia~vv~~~l~~~~~~~~s~~l~a~a~~~~~Dvi~~~~~lv~~~l~~~~~~~~Dpi~aiiIa~~ii~~~~~~~~e~~ 308 (412)
...+++.+++..=-+.-|+.+.++.--...|...|.++- |+.-+++.......-.+++-++..+|++..+.|+.+=|+
T Consensus 40 ~~i~lA~i~DglDG~VAR~~~~~s~~G~~lDSLaD~VsF--gVaPA~l~y~~~~~~~~~~~~~a~~~~~~~alRLArFN~ 117 (234)
T COG1183 40 LLILLALILDGLDGRVARKLNAKSAFGAELDSLADLVSF--GVAPALLLYSSGLNTGPLGLLAALLYVLCGALRLARFNV 117 (234)
T ss_pred HHHHHHHHHcccchHHHHhcCCcchHHHHHhHHHHHHHh--hHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHccC
Confidence 344555566555445556666555556667888888765 344445443332222678888888999999999988776
Q ss_pred HHhh
Q 015157 309 VSLV 312 (412)
Q Consensus 309 ~~Ll 312 (412)
..--
T Consensus 118 ~~~~ 121 (234)
T COG1183 118 KTND 121 (234)
T ss_pred cccC
Confidence 6543
No 75
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=28.37 E-value=2e+02 Score=22.38 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=41.3
Q ss_pred hhCCCCCHHHHHHHHHHHHhhCCCccccceeEEEE------eCCeEEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 015157 311 LVGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYT------FGVLYFVEVDIELPEDLPLKEAHTIGESLQI 376 (412)
Q Consensus 311 Llg~s~~~e~~~~I~~~~~~~~~~V~~v~~vr~~~------~G~~~~vev~I~v~~~~~l~eah~I~~~lq~ 376 (412)
++|+....+.+.+|...+.++.-.|.+++.+.-|. ..+.+.+++++..++ . +..++.+.+..
T Consensus 4 vlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~-~---~~~~lr~~L~~ 71 (84)
T cd04871 4 LLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP-A---DLEALRAALLE 71 (84)
T ss_pred EEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC-C---CHHHHHHHHHH
Confidence 57877788999999999999955666666653332 124667888888654 3 33445555543
No 76
>cd00643 HMG-CoA_reductase_classI Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class I enzyme, homotetramer. Catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals this is the rate limiting committed step in cholesterol biosynthesis. Class I enzymes are found predominantly in eukaryotes and contain N-terminal membrane regions. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR are divergent in their N-terminal regions, but are conserved in their active site. In contrast, human and bacterial HMGR differ in their active site architecture.
Probab=28.21 E-value=5e+02 Score=26.78 Aligned_cols=82 Identities=16% Similarity=0.262 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHc-CCCccEEEEEEeeccCCC
Q 015157 320 VLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEE-LPEVERAFVHLDFECDHK 398 (412)
Q Consensus 320 ~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~-l~~v~~~~Vhvd~~~~~~ 398 (412)
..++|++.+.+. ...-...+++.+..|+.+++.+.+..-.-|=---.....|.+-+.|++ .|+.....+.=.+..|.|
T Consensus 150 ~~~~i~~~a~st-sr~g~l~~i~~~~~g~~v~lrf~~~TgDAMG~NMv~~~~e~v~~~i~~~~~~~~~~~i~gN~~tdKK 228 (403)
T cd00643 150 NFEAIKEVAEST-SRHARLQSIKPYIAGRSVYLRFEYTTGDAMGMNMVTKATEAACDWIEENFPDMEVISLSGNFCTDKK 228 (403)
T ss_pred HHHHHHHHHHhc-CCCcccceEEEEecCCEEEEEEEEEcCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEecccccccc
Confidence 345555566555 445677888888889877777777664433322233445555555653 455444555556666766
Q ss_pred Cccc
Q 015157 399 PEHS 402 (412)
Q Consensus 399 peh~ 402 (412)
|...
T Consensus 229 ~sa~ 232 (403)
T cd00643 229 PSAI 232 (403)
T ss_pred chhh
Confidence 6543
No 77
>PRK14639 hypothetical protein; Provisional
Probab=28.15 E-value=1.9e+02 Score=25.03 Aligned_cols=46 Identities=11% Similarity=-0.037 Sum_probs=39.1
Q ss_pred cccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcC
Q 015157 336 KRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEEL 381 (412)
Q Consensus 336 ~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l 381 (412)
..+-++...+.|....+.+.|.-+...+++++..+++.|...|...
T Consensus 12 ~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~~ 57 (140)
T PRK14639 12 VSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVE 57 (140)
T ss_pred CEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 4667888888888888899988777899999999999999999743
No 78
>PRK00194 hypothetical protein; Validated
Probab=28.11 E-value=1.1e+02 Score=23.67 Aligned_cols=41 Identities=2% Similarity=0.128 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCC
Q 015157 317 SPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPE 360 (412)
Q Consensus 317 ~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~ 360 (412)
.|.++.++.+.+.++.- +|.+++....+...++.+.+.+++
T Consensus 13 rpGiva~vt~~la~~g~---nI~~~~~~~~~~~~~~~~~v~~~~ 53 (90)
T PRK00194 13 KVGIIAGVSTVLAELNV---NILDISQTIMDGYFTMIMLVDISE 53 (90)
T ss_pred CCCHHHHHHHHHHHcCC---CEEehhhHhhCCeeEEEEEEEecC
Confidence 46789999999999843 444444444566677777777764
No 79
>PF05105 Phage_holin_4: Holin family ; InterPro: IPR006480 This group of sequences describe one of the many mutually dissimilar families of holins, phage proteins that act together with lytic enzymes in bacterial lysis. This family includes, besides phage holins, the protein TcdE/UtxA involved in toxin secretion in Clostridium difficile and related species []. This entry is represented by the Bacteriophage phi-29, Gp14 (holin). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.84 E-value=3.5e+02 Score=22.36 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHhhCCCCCH
Q 015157 285 DPVGAILLAIYTITNWSGTVQENAVSLVGQSASP 318 (412)
Q Consensus 285 Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~ 318 (412)
.|+...++..++..+... +.||...+ |...|+
T Consensus 74 ~~~~~~~~~~~i~~E~~S-I~EN~~~~-G~~iP~ 105 (118)
T PF05105_consen 74 LPFRTLVIIFYILNELIS-ILENLAEM-GVPIPK 105 (118)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHh-CCCchH
Confidence 466666778888888776 45999876 754443
No 80
>PRK14636 hypothetical protein; Provisional
Probab=27.63 E-value=4e+02 Score=24.08 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCC--CCCHHHHHHHHHHHHHHHHcCCCc
Q 015157 319 EVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPE--DLPLKEAHTIGESLQIKIEELPEV 384 (412)
Q Consensus 319 e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~--~~~l~eah~I~~~lq~~L~~l~~v 384 (412)
++.+.++.++... + ..+.++.+.+.|....+.|.|.-+. ..+++++..+.+.|...|...+.+
T Consensus 6 ~i~~lvep~~~~~--G-leLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~d~i 70 (176)
T PRK14636 6 ALTALIEPEAKAL--G-LDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDELDPI 70 (176)
T ss_pred HHHHHHHHHHHHc--C-CEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccCcCC
Confidence 3445555555554 3 4677888887788888888887553 499999999999999999744333
No 81
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=26.95 E-value=5.3e+02 Score=24.12 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEEE
Q 015157 319 EVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAF 388 (412)
Q Consensus 319 e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~~ 388 (412)
+..+++.+.+.+. + ..+.+++.........+++.+.++++.+. +++-+.|++.|+|.++.
T Consensus 154 ~~~~~i~~~l~~~--~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~L~~~~~V~~v~ 213 (215)
T PRK09977 154 GNVVSMLDWFKQQ--K-IKTDLVSLQENEDHEVVAIDITLHATTSI-------EDLYRLLKGIAGVKGVS 213 (215)
T ss_pred ccHHHHHHHHHHc--C-ceEEEEEEEecCCCcEEEEEEEECCCCCH-------HHHHHHHhcCCCceEEE
Confidence 3456677666655 2 35566665544333446777777755433 34456778889987764
No 82
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=26.62 E-value=5e+02 Score=23.75 Aligned_cols=166 Identities=8% Similarity=0.002 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHHHhhhhHHhhhhhhccC-------------------------------ccCHHHHHHHHHH----HH
Q 015157 71 GLIEGEKEYYEKQFATLKSFEEVDSLVSNN-------------------------------AIDEEKYLQEQVQ----HE 115 (412)
Q Consensus 71 ~~~~~~~~fy~~q~~~l~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~----~~ 115 (412)
+++|+=++|+.+-+..|++....++..+.- -.++...+.+..+ -.
T Consensus 1 ~LTkkN~~y~~~l~~~L~~~~~~e~~~e~~L~eil~~LleaQk~G~tA~~lfG~P~~~a~eli~~~~k~~~~~~~~~~~~ 80 (206)
T PF06570_consen 1 KLTKKNQEYIFDLRKYLRSSGVSEEEIEELLEEILPHLLEAQKKGKTARQLFGDPKEYADELIKPLPKPKKKNKNSNPWL 80 (206)
T ss_pred CCchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHcCCHHHHHHHHhccccCCcccccccchHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHH-HHhhcCCCCCCCCCccchhhhHHHHHHHHH
Q 015157 116 RAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWIT-HLSMKNINIYKYPIGKLRMQPVGIIIFAAV 194 (412)
Q Consensus 116 ~al~isi~~N~~l~~~k~~~~~~sgS~aL~adaldsl~D~~s~~i~l~~-~~~~~~~~~~~~P~G~~R~E~l~~li~~~~ 194 (412)
.++..+++.-.+++++..+.+++++..+-...-+--+.-.+..++.+.. .+...+.+..+.-.+..|.=.++.+...+.
T Consensus 81 ~~ld~~L~~~~if~~~~gi~~~f~~~~~~~~gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~~~~w 160 (206)
T PF06570_consen 81 MALDNSLLFFGIFSLLFGIMGFFSPKNSNQYGIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVLAMVLW 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015157 195 MATLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGIKLALWFYCRSSG 249 (412)
Q Consensus 195 m~~~~~~vl~esi~~Li~~~~~~~~~~~~~~~~i~i~~ia~vv~~~l~~~~~~~~ 249 (412)
++...+.-+ +..-+++.-++ +...+++.+.-.+.+++.+|.+
T Consensus 161 ~~~~~~~~~---lp~~inp~l~~----------~~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 161 IVIFVLTSF---LPPVINPVLPP----------WVYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHH---ccccCCcCCCH----------HHHHHHHHHHHHHHHHHHHHhC
No 83
>COG1971 Predicted membrane protein [Function unknown]
Probab=26.46 E-value=5.1e+02 Score=23.81 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015157 189 IIFAAVMATLGFQVLVQAVEQ 209 (412)
Q Consensus 189 li~~~~m~~~~~~vl~esi~~ 209 (412)
.+-++++.++|..+++|+.+.
T Consensus 71 wigf~lL~~lG~~mI~e~f~~ 91 (190)
T COG1971 71 WIGFVLLIILGLKMIIEGFKN 91 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhch
Confidence 355677788899999998876
No 84
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=26.09 E-value=1.2e+02 Score=24.35 Aligned_cols=29 Identities=31% Similarity=0.292 Sum_probs=22.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHHc
Q 015157 352 VEVDIELPEDLPLKEAHTIGESLQIKIEE 380 (412)
Q Consensus 352 vev~I~v~~~~~l~eah~I~~~lq~~L~~ 380 (412)
+=++|.-.+++++.|.+++.+.+++.+..
T Consensus 39 vLvni~~~~d~~l~ev~~~~~~i~~~~~~ 67 (95)
T PF12327_consen 39 VLVNITGGPDLSLSEVNEAMEIIREKADP 67 (95)
T ss_dssp EEEEEEE-TTS-HHHHHHHHHHHHHHSST
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHhhc
Confidence 34566788999999999999999999863
No 85
>PRK14637 hypothetical protein; Provisional
Probab=25.87 E-value=4.6e+02 Score=23.04 Aligned_cols=58 Identities=10% Similarity=-0.010 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHc
Q 015157 320 VLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEE 380 (412)
Q Consensus 320 ~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~ 380 (412)
..+.+..++.+. + ..+.++...+.|....+.+.|.-+...+++++.++.+.|...|..
T Consensus 10 ~~~~v~p~~~~~--g-~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 10 YFSECEPVVEGL--G-CKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEA 67 (151)
T ss_pred HHHHHHHHHHhc--C-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 345666667665 2 577888998888888888888877789999999999999988864
No 86
>PRK04998 hypothetical protein; Provisional
Probab=25.87 E-value=3.3e+02 Score=21.44 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=40.7
Q ss_pred hCCCCCHHHHHHHHHHHHhhCCCccccceeEEEEe--CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCcc
Q 015157 312 VGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTF--GVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVE 385 (412)
Q Consensus 312 lg~s~~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~--G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~ 385 (412)
+|. ..+++.+.|..++.++.|+. +.++.+.+ |...-+.+.+.+.. - +-.+.|-+.|.+.|+|.
T Consensus 21 ig~-~~~~~~~~v~~v~~~~~~~~---~~~~~r~S~~GkY~Svtv~v~v~s---~----eq~~~iY~~L~~~~~V~ 85 (88)
T PRK04998 21 MGL-ARPELVDQVVEVVQRHAPGD---YTPTVKPSSKGNYHSVSITITATS---I----EQVETLYEELAKIEGVR 85 (88)
T ss_pred EEe-CcHhHHHHHHHHHHHhCCCC---CCceEccCCCCEEEEEEEEEEECC---H----HHHHHHHHHHhcCCCEE
Confidence 453 36789999999998885542 23444444 44445777777753 2 23456777788888874
No 87
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=25.72 E-value=95 Score=22.12 Aligned_cols=27 Identities=26% Similarity=0.515 Sum_probs=17.6
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHHH
Q 015157 176 YPIGKLRMQPVGIIIFAAVMATLGFQVL 203 (412)
Q Consensus 176 ~P~G~~R~E~l~~li~~~~m~~~~~~vl 203 (412)
|-|-|..+. +++++++.+++++|+.++
T Consensus 7 F~YDy~tLr-igGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 7 FYYDYETLR-IGGLIFAGVLFILGILII 33 (50)
T ss_dssp GGGCHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CccchhHhh-ccchHHHHHHHHHHHHHH
Confidence 444444432 577888888888887654
No 88
>PHA02819 hypothetical protein; Provisional
Probab=25.65 E-value=3.1e+02 Score=20.98 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHH--HHHHHHHHHHhhcCC
Q 015157 184 QPVGIIIFAAVMATLG--FQVLVQAVEQLIKDE 214 (412)
Q Consensus 184 E~l~~li~~~~m~~~~--~~vl~esi~~Li~~~ 214 (412)
|-+.+-++|+||-..- +.=+.+.++..++.+
T Consensus 2 DKLYaaiFGvFmsS~DdDFnnFI~VVksVLtd~ 34 (71)
T PHA02819 2 DKLYSAIFGVFMSSSDDDFNNFINVVKSVLNNE 34 (71)
T ss_pred hhHHHHHHHhhhCCchhHHHHHHHHHHHHHcCC
Confidence 4455667777775332 445667777777663
No 89
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=25.15 E-value=3.4e+02 Score=21.36 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEEEE
Q 015157 315 SASPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFV 389 (412)
Q Consensus 315 s~~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~~V 389 (412)
...||.++++.+..... | ..+-.+..-..-+.-.+.+++.|+++-++ +-+...|+++.+|..+.+
T Consensus 11 r~~pe~leRVLrvtrhR--G-F~vcamnmt~~~da~~~nie~tV~s~R~~-------~lL~~QLeKl~Dv~~V~i 75 (86)
T COG3978 11 RFNPETLERVLRVTRHR--G-FRVCAMNMTAAVDAGNANIELTVDSDRSV-------DLLTSQLEKLYDVAHVEI 75 (86)
T ss_pred cCChHHHHHHHHHhhhc--C-eEEEEeecccccccccceEEEEEcCCCCh-------HHHHHHHHHHccceeEEE
Confidence 35689999999887543 3 22223333322122234566777777766 466777888888865544
No 90
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=25.09 E-value=6.7e+02 Score=24.70 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 015157 188 IIIFAAVMATLGFQVLVQAVEQLIK 212 (412)
Q Consensus 188 ~li~~~~m~~~~~~vl~esi~~Li~ 212 (412)
.-.+|..|.+.|+...+....+...
T Consensus 11 ~~~f~~~mG~~gL~~~~~~~~~~~~ 35 (324)
T PRK10764 11 AGYFGIVLGLIGLGFAWRYAAQLWP 35 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4467888888998888877665544
No 91
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.87 E-value=2.9e+02 Score=20.40 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCC-CCHH
Q 015157 317 SPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPED-LPLK 365 (412)
Q Consensus 317 ~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~-~~l~ 365 (412)
.|.++.+|.+.+.++.-.|.+++.-. .+.+..+++.+.+.+|+. .+..
T Consensus 9 ~~Giv~~it~~l~~~g~nI~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~ 57 (74)
T cd04875 9 RPGIVAAVSGFLAEHGGNIVESDQFV-DPDSGRFFMRVEFELEGFDLSRE 57 (74)
T ss_pred CCCHHHHHHHHHHHcCCCEEeeeeee-cCCCCeEEEEEEEEeCCCCCCHH
Confidence 46789999999999843344443322 245566778888888864 5543
No 92
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.77 E-value=2.8e+02 Score=20.20 Aligned_cols=63 Identities=21% Similarity=0.153 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhCCCccccceeEEEEe-CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEEEE
Q 015157 318 PEVLQKLTYLVIQHHPQIKRVDTVRAYTF-GVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFV 389 (412)
Q Consensus 318 ~e~~~~I~~~~~~~~~~V~~v~~vr~~~~-G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~~V 389 (412)
+..+.+|...+.+.. .++..+..... +....+.+.+.+.. ...--+++-++|+++|+|.+|.+
T Consensus 11 ~g~l~~I~~~la~~~---inI~~i~~~~~~~~~~~i~~~v~v~~------~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 11 PGVLSKVLNTIAQVR---GNVLTINQNIPIHGRANVTISIDTST------MNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred CchHHHHHHHHHHcC---CCEEEEEeCCCCCCeEEEEEEEEcCc------hHHHHHHHHHHHhcCCCeEEEEE
Confidence 567888988888773 34444433221 22334555555532 12234677888999999988754
No 93
>PRK02507 proton extrusion protein PcxA; Provisional
Probab=24.47 E-value=8.1e+02 Score=25.44 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchH-----HHHHhHHHHHHHHHHHHH-HHHHHHhhcCCCCCCCCCccchhhh
Q 015157 112 VQHERAMNISNWANIFLLAFKIYATIQSGSL-----AIAASTLDSLLDLMAGGI-LWITHLSMKNINIYKYPIGKLRMQP 185 (412)
Q Consensus 112 ~~~~~al~isi~~N~~l~~~k~~~~~~sgS~-----aL~adaldsl~D~~s~~i-~l~~~~~~~~~~~~~~P~G~~R~E~ 185 (412)
+.+..-.+..++.|++.+++-....+..... +.+-+.+.++.|..=.++ ++++-...- ..=|.|
T Consensus 293 n~~si~~i~nl~tDli~~~~f~~l~i~~k~~l~IL~s~~~E~~Y~LSDt~KAF~IIL~TDlfVG----FHSphG------ 362 (422)
T PRK02507 293 RYESLNAIKNVFADLFSLIAFAVVLIFSREEIEVLKSFLDEIVYGLSDSAKAFIIILFTDIFVG----FHSPHG------ 362 (422)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc----CCCchh------
Confidence 3344556667777777777666665555543 455677888888887765 344422211 122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 015157 186 VGIIIFAAVMATLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGIKLALWFYCRSSGNKIVRA 255 (412)
Q Consensus 186 l~~li~~~~m~~~~~~vl~esi~~Li~~~~~~~~~~~~~~~~i~i~~ia~vv~~~l~~~~~~~~s~~l~a 255 (412)
..++.+++-+=+.-++.... -....+..=+++-++.|+++++|..|. ||+..|
T Consensus 363 --------------WEvll~~i~~HfGl~~n~~~--I~lFVaTfPViLDTiFKYWIFRyLNRi-SPS~Va 415 (422)
T PRK02507 363 --------------WEVILEGIARHFGLPENRNF--IFLFIATFPVILDTIFKYWIFRYLNRI-SPSAVA 415 (422)
T ss_pred --------------HHHHHHHHHHhcCCCcccch--HHHHHhhhhHHHHHHHHHHHHhhccCC-ChHHHH
Confidence 34555555553332332211 011111112456677888888888777 455443
No 94
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=24.41 E-value=3.6e+02 Score=21.39 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=12.2
Q ss_pred HHHHHHHHhhcCCCCCCCCC
Q 015157 159 GILWITHLSMKNINIYKYPI 178 (412)
Q Consensus 159 ~i~l~~~~~~~~~~~~~~P~ 178 (412)
+...++...+.+.+..+||+
T Consensus 85 v~~I~~~~~a~~g~~~~~P~ 104 (109)
T PF09685_consen 85 VLSIIGAIKANKGEPYRYPF 104 (109)
T ss_pred HHHHHHHHHHHCCCeeecCe
Confidence 34444555556666688885
No 95
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.25 E-value=3.2e+02 Score=20.64 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 015157 317 SPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKI 378 (412)
Q Consensus 317 ~~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L 378 (412)
.|....++...+.++ + .+|++-++++..+.+.++.-.+.+.+- ++..++.+.+|+.|
T Consensus 11 r~gLFa~iag~L~~~--~-LnI~~A~i~tt~dG~~LDtF~V~d~~~--~~~~~~~~~~~~~~ 67 (68)
T cd04928 11 KPKLLSQLSSLLGDL--G-LNIAEAHAFSTDDGLALDIFVVTGWKR--GETAALGHALQKEI 67 (68)
T ss_pred CcchHHHHHHHHHHC--C-CceEEEEEEEcCCCeEEEEEEEecCCc--cchHHHHHHHHHhh
Confidence 356778888888877 2 688999999998888888888887643 56667777777765
No 96
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=24.02 E-value=85 Score=22.06 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=15.5
Q ss_pred hhhhhhHHHHHHHHHHHHHh
Q 015157 281 YWWIDPVGAILLAIYTITNW 300 (412)
Q Consensus 281 ~~~~Dpi~aiiIa~~ii~~~ 300 (412)
..++||+.|+++++.-.+..
T Consensus 4 sr~lDP~~av~iG~~ayyl~ 23 (47)
T PF11654_consen 4 SRFLDPLFAVFIGTSAYYLY 23 (47)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 56899999999888765543
No 97
>PRK14645 hypothetical protein; Provisional
Probab=23.92 E-value=5.1e+02 Score=22.86 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeC--CCCCHHHHHHHHHHHHHHHHcC
Q 015157 321 LQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELP--EDLPLKEAHTIGESLQIKIEEL 381 (412)
Q Consensus 321 ~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~--~~~~l~eah~I~~~lq~~L~~l 381 (412)
.+.+...+... + ..+.++.+.+.|....+.|.|.-+ ...+++++..+++.|...|...
T Consensus 12 ~~li~~~~~~~--G-~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~ 71 (154)
T PRK14645 12 QQLAEGALEPL--G-YEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRL 71 (154)
T ss_pred HHHHHHHHHHc--C-CEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccc
Confidence 34444455444 2 577888888888877788888753 2499999999999999999643
No 98
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=23.51 E-value=6.3e+02 Score=23.82 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015157 109 QEQVQHERAMNISNWANIFL 128 (412)
Q Consensus 109 ~~~~~~~~al~isi~~N~~l 128 (412)
-+++..++....+++.|+.+
T Consensus 91 ~~~~~~r~~~~~~i~~~i~~ 110 (248)
T PF11368_consen 91 YYRKMNRKLEYATIFFNISI 110 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555443
No 99
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=23.36 E-value=7e+02 Score=24.33 Aligned_cols=21 Identities=19% Similarity=0.553 Sum_probs=12.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhH
Q 015157 281 YWWIDPVGAILLAIYTITNWS 301 (412)
Q Consensus 281 ~~~~Dpi~aiiIa~~ii~~~~ 301 (412)
.||++.+..++.++++...++
T Consensus 100 lw~~~~~l~l~~~~~~~~~~~ 120 (320)
T TIGR00816 100 LWYIGAIGQLLFSVIVPFYLF 120 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655554443
No 100
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=23.26 E-value=7.2e+02 Score=24.44 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=35.4
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhh------hhhhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 015157 256 YAKDHYFDVVTNVVGLIAAVLGDEF------YWWIDPVGAILLAIYTITNWSGTVQENAVS 310 (412)
Q Consensus 256 ~a~~~~~Dvi~~~~~lv~~~l~~~~------~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~ 310 (412)
.......|.+.++=+++.|++|.-+ +.+-=-.|++.++++++..-.++..|+.+.
T Consensus 109 ~~ir~~i~~La~vPSIV~GLFg~~~fV~~~g~~~S~laGaLaLall~LP~iirtteeaL~~ 169 (292)
T COG0581 109 KVIRFAIDILASVPSIVYGLFGLGFFVVTLGFGFSALAGALALALLMLPVVIRTTEEALRA 169 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566777777667766666432 123345678888888888777777666554
No 101
>PF04456 DUF503: Protein of unknown function (DUF503); InterPro: IPR007546 This is a family of conserved hypothetical bacterial proteins, including TT1725 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), which has a ferredoxin-like alpha+beta-sandwich fold [].; PDB: 1J27_A.
Probab=23.22 E-value=3e+02 Score=21.97 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=29.1
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEEEEEEee
Q 015157 351 FVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFVHLDF 393 (412)
Q Consensus 351 ~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~~Vhvd~ 393 (412)
.+.+++.+|...+|++=..+..++..++++.++|. ..++++
T Consensus 4 ~l~l~l~lp~~~SLKeKR~vvksl~~klr~rfnvS--vaEv~~ 44 (90)
T PF04456_consen 4 VLRLELRLPGAHSLKEKRQVVKSLIDKLRNRFNVS--VAEVGH 44 (90)
T ss_dssp EEEEEEE----SSHHHHHHHHHHHHHHHHHHSS-E--EEEEE-
T ss_pred EEEEEEEeccccchhHhHHHHHHHHHHHHhhCCeE--EEEecC
Confidence 46888999999999999999999999999878873 445554
No 102
>CHL00043 cemA envelope membrane protein
Probab=22.91 E-value=7e+02 Score=24.14 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchH-----HHHHhHHHHHHHHHHHHH-HHHHHHhhcCCCCCCCCCccchhhh
Q 015157 112 VQHERAMNISNWANIFLLAFKIYATIQSGSL-----AIAASTLDSLLDLMAGGI-LWITHLSMKNINIYKYPIGKLRMQP 185 (412)
Q Consensus 112 ~~~~~al~isi~~N~~l~~~k~~~~~~sgS~-----aL~adaldsl~D~~s~~i-~l~~~~~~~~~~~~~~P~G~~R~E~ 185 (412)
+.+..-....++.|++.++.-....+..+.. +-+-+.+.++.|..=.++ ++++-...- ..=|.|
T Consensus 132 n~~~i~~i~n~~td~i~~~~~~~~~i~~k~~l~il~s~~~E~~Y~LSDt~KAF~IiL~TDlfvG----FHSphG------ 201 (261)
T CHL00043 132 NEDSIHTILHLSTNIISFAILSGLSILGKEELVILNSWLQEFLYNLSDTIKAFSILLLTDLCIG----FHSPHG------ 201 (261)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc----CCCchh------
Confidence 3344556677778877777766666665554 446678888899887765 344422211 122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 015157 186 VGIIIFAAVMATLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGIKLALWFYCRSSGNKIVRA 255 (412)
Q Consensus 186 l~~li~~~~m~~~~~~vl~esi~~Li~~~~~~~~~~~~~~~~i~i~~ia~vv~~~l~~~~~~~~s~~l~a 255 (412)
..++.+++-+=+.-++.... -....+..=+++-++.|++.++|..|. ||+..|
T Consensus 202 --------------WEvli~~i~~hfGl~~n~~~--I~lfVatfPViLDtiFKYWIFRyLNRi-SPS~Va 254 (261)
T CHL00043 202 --------------WELLIGSIYKHFGFAHNDQI--ISLLVSTFPVILDTIFKYWIFRYLNRV-SPSLVV 254 (261)
T ss_pred --------------HHHHHHHHHHhcCCCcccch--HHHHHHhhhHHHHHHHHHHHHhhccCC-ChHHHH
Confidence 34555555553433333211 011111111455677888888888776 555444
No 103
>TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase. This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding E.coli protein.
Probab=22.77 E-value=5.2e+02 Score=22.63 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHhHHHhhhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 015157 229 AIMLSATGIKLALWFYCRSSGNKIVRAYAKDHYFDVVTNVVGLIAAVLGDEFYWWIDPVGAILLAIYTITNWSGTVQENA 308 (412)
Q Consensus 229 ~i~~ia~vv~~~l~~~~~~~~s~~l~a~a~~~~~Dvi~~~~~lv~~~l~~~~~~~~Dpi~aiiIa~~ii~~~~~~~~e~~ 308 (412)
....++.+...+=-..-|+.+.++-.-...|...|.++-. ++-+++.... ....+.+.++..++++..++|+.+-|.
T Consensus 25 ~~l~~a~~~D~~DG~vAR~~~~~s~~G~~lDsl~D~vsfg--vaPa~l~~~~-~~~~~~~~~~~~~~~l~~a~RLArFN~ 101 (151)
T TIGR00473 25 FLILLSMFFDFLDGRVARKTNRVSDFGKELDSLADVVSFG--VAPAALAYSI-GNFQTIGILVAALFFLCGILRLARFNV 101 (151)
T ss_pred HHHHHHHHHHHhhHHHHHHcCCCChHHHHHHHHHHHHHHH--HHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344555666554445566554444445567888887653 3333333221 112334444556788899999999886
Q ss_pred H
Q 015157 309 V 309 (412)
Q Consensus 309 ~ 309 (412)
.
T Consensus 102 ~ 102 (151)
T TIGR00473 102 L 102 (151)
T ss_pred c
Confidence 5
No 104
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=22.65 E-value=9.7e+02 Score=25.71 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCc
Q 015157 194 VMATLGFQVLVQAVEQLIKDEPSE 217 (412)
Q Consensus 194 ~m~~~~~~vl~esi~~Li~~~~~~ 217 (412)
+|..-|+.+=..=++.+++-+..|
T Consensus 91 f~~~ygv~id~~Mi~Nv~~T~~~E 114 (545)
T PRK11598 91 FMMTYGIVIDRSMIQNIFETTPAE 114 (545)
T ss_pred HHHhcCCcccHHHHHHHhhCCHHH
Confidence 444444444344456666555443
No 105
>PRK09577 multidrug efflux protein; Reviewed
Probab=21.92 E-value=1.9e+02 Score=33.60 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=35.3
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEEEEEE
Q 015157 351 FVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFVHL 391 (412)
Q Consensus 351 ~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~~Vhv 391 (412)
.+.+++.+|++.++++..++.+++++.|++.|++++++...
T Consensus 568 ~~~v~~~~p~gtsl~~t~~~~~~ve~~l~~~~~v~~~~~~~ 608 (1032)
T PRK09577 568 NFMVMVIRPQGTPLAETMQSVREVESYLRRHEPVAYTFALG 608 (1032)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHHHHHhhCCCceEEEEEe
Confidence 34788999999999999999999999998888888776443
No 106
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.46 E-value=3e+02 Score=19.37 Aligned_cols=62 Identities=23% Similarity=0.248 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCccEEEEE
Q 015157 318 PEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFVH 390 (412)
Q Consensus 318 ~e~~~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~~~Vh 390 (412)
+..+.++...+.++. .++.++.....+... ..+.+.++.. +..+.+.++|++.++|..+.+|
T Consensus 11 ~g~l~~i~~~l~~~~---~~i~~~~~~~~~~~~-~~~~i~~~~~-------~~~~~~~~~L~~~~~v~~v~~~ 72 (72)
T cd04874 11 PGVLRDLTGVIAEHG---GNITYTQQFIEREGK-ARIYMELEGV-------GDIEELVEELRSLPIVREVEIH 72 (72)
T ss_pred CChHHHHHHHHHhCC---CCEEEEEEeccCCCe-EEEEEEEecc-------ccHHHHHHHHhCCCCeEEEEeC
Confidence 346888888888773 344444444332221 2233555532 1234777889999999888775
No 107
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.33 E-value=7.9e+02 Score=24.18 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=11.6
Q ss_pred hhhhHHHHHHHHHhhhhHHhhh
Q 015157 73 IEGEKEYYEKQFATLKSFEEVD 94 (412)
Q Consensus 73 ~~~~~~fy~~q~~~l~~~~~~~ 94 (412)
.++.++--++|+|+=++-.|.|
T Consensus 63 ~~kq~eL~~rqeEL~Rke~ELd 84 (313)
T KOG3088|consen 63 AKKQAELLKKQEELRRKEQELD 84 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666666555444443
No 108
>PRK14643 hypothetical protein; Provisional
Probab=21.05 E-value=5.9e+02 Score=22.70 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=36.3
Q ss_pred cccceeEEEEeCCeEEEEEEEEe----CCCCCHHHHHHHHHHHHHHHHc
Q 015157 336 KRVDTVRAYTFGVLYFVEVDIEL----PEDLPLKEAHTIGESLQIKIEE 380 (412)
Q Consensus 336 ~~v~~vr~~~~G~~~~vev~I~v----~~~~~l~eah~I~~~lq~~L~~ 380 (412)
..+.++...+.|...++.|.|.= ++..+++++..+++.|...|..
T Consensus 24 ~eL~die~~~~~~~~~lrV~Id~~~~~~ggvtldDC~~vSr~is~~LD~ 72 (164)
T PRK14643 24 LKVYEINNLKEFENDMIQILVEDILQANKPLDFDILIKANDLVSNKIDQ 72 (164)
T ss_pred CEEEEEEEEecCCCcEEEEEEecCCCcCCCcCHHHHHHHHHHHHHHhCc
Confidence 56778888888887777888852 2459999999999999999964
No 109
>PHA02692 hypothetical protein; Provisional
Probab=20.84 E-value=3.9e+02 Score=20.42 Aligned_cols=33 Identities=12% Similarity=0.388 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHH--HHHHHHHHHHHhhcCCCC
Q 015157 184 QPVGIIIFAAVMATL--GFQVLVQAVEQLIKDEPS 216 (412)
Q Consensus 184 E~l~~li~~~~m~~~--~~~vl~esi~~Li~~~~~ 216 (412)
|-+.+-++|+||-.. =+.-+.+.++..+...+.
T Consensus 2 DKLyaaifGVFmss~DdDF~~Fi~vVksVLtDk~~ 36 (70)
T PHA02692 2 DKLYAGVFGSFLSNSDEDFEEFLNIVRTVMTEKPA 36 (70)
T ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCc
Confidence 345566677766532 255677888888877643
No 110
>PRK05783 hypothetical protein; Provisional
Probab=20.47 E-value=4.4e+02 Score=20.85 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=38.6
Q ss_pred HHHHHHHHhhCCCccccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHH-HcCCCccEEEEEEee
Q 015157 322 QKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKI-EELPEVERAFVHLDF 393 (412)
Q Consensus 322 ~~I~~~~~~~~~~V~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L-~~l~~v~~~~Vhvd~ 393 (412)
+.|.+.+... +...+.++|+ |. ++++.+.- + +-++|.+.++++-++| -..|-++...|.+++
T Consensus 21 ~aI~~aL~~l--g~~~V~~VRv---GK--~iel~l~~--~-~~e~a~~~v~~mc~~LrLaNpVIe~y~i~~~~ 83 (84)
T PRK05783 21 ETIQRYVIER--YTGNIIEVRA---GK--YLVFKIEA--N-SPEEAKELALKIAREGRLYNPIVHKIVVRVRR 83 (84)
T ss_pred HHHHHHHHHc--CCCCcceEEe---eE--EEEEEEcC--C-CHHHHHHHHHHHHHhcCcCCceeEEEEEEEEe
Confidence 3455555444 3445677765 53 33444433 2 4467777788887887 567999988887765
No 111
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=20.31 E-value=2.6e+02 Score=20.08 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=28.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHcCCCc--cEEEEEEe
Q 015157 354 VDIELPEDLPLKEAHTIGESLQIKIEELPEV--ERAFVHLD 392 (412)
Q Consensus 354 v~I~v~~~~~l~eah~I~~~lq~~L~~l~~v--~~~~Vhvd 392 (412)
++|.+.+..+.++-..+++.+.+.+.+..++ +.++|-++
T Consensus 4 i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ 44 (60)
T PRK02289 4 VRIDLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFIN 44 (60)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEE
Confidence 5677777789999999999999999754343 34445443
No 112
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=20.28 E-value=9.9e+02 Score=24.87 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=40.4
Q ss_pred HHHhhchHHHHHhHHHHHHHHHHHHH-HHHHHHhhcCC---------CCCCCCC------ccchhhhHHHHHHHHHHHHH
Q 015157 135 ATIQSGSLAIAASTLDSLLDLMAGGI-LWITHLSMKNI---------NIYKYPI------GKLRMQPVGIIIFAAVMATL 198 (412)
Q Consensus 135 ~~~~sgS~aL~adaldsl~D~~s~~i-~l~~~~~~~~~---------~~~~~P~------G~~R~E~l~~li~~~~m~~~ 198 (412)
+.+++=..+=+.|-+-.+.-.+-..+ .++..+..-++ ..+.+|| ||.-++.++++.+|.+
T Consensus 131 a~~~sl~psklid~vGk~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~Fgiv---- 206 (431)
T COG1114 131 AYLFSLNPSKLIDRVGKFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGIV---- 206 (431)
T ss_pred HHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHHH----
Confidence 34455556666666666665554443 23333322222 1223566 7888999999999884
Q ss_pred HHHHHHHHHHHhhc
Q 015157 199 GFQVLVQAVEQLIK 212 (412)
Q Consensus 199 ~~~vl~esi~~Li~ 212 (412)
+.+++++.-.
T Consensus 207 ----Iv~alk~~g~ 216 (431)
T COG1114 207 ----IVNALKSKGV 216 (431)
T ss_pred ----HHHHHHHhcc
Confidence 4567776543
No 113
>PRK14641 hypothetical protein; Provisional
Probab=20.20 E-value=5.4e+02 Score=23.20 Aligned_cols=45 Identities=11% Similarity=0.134 Sum_probs=38.2
Q ss_pred cccceeEEEEeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHc
Q 015157 336 KRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEE 380 (412)
Q Consensus 336 ~~v~~vr~~~~G~~~~vev~I~v~~~~~l~eah~I~~~lq~~L~~ 380 (412)
..+.++.+...|....+.|.|.-+...+++++..+++.|...|..
T Consensus 24 ~eLvdve~~~~~~~~~lrV~ID~~~gv~lDdC~~vSr~Is~~LD~ 68 (173)
T PRK14641 24 VYLVSMTVKGSGKGRKIEVLLDADTGIRIDQCAFFSRRIRERLEE 68 (173)
T ss_pred eEEEEEEEEeCCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhCc
Confidence 467788888888888888888777779999999999999999963
Done!