RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015157
(412 letters)
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
cell inner membrane, cell membrane, ION transport, iron
transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Length = 283
Score = 146 bits (370), Expect = 4e-41
Identities = 56/282 (19%), Positives = 116/282 (41%), Gaps = 12/282 (4%)
Query: 116 RAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGI-LWITHLSMKNINIY 174
RA + LL KI+A +GS++I A+ +DSL+D+ A L + S++ +
Sbjct: 4 RAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPAD-D 62
Query: 175 KYPIGKLRMQPVGIIIFAAVMATLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSA 234
+ G + + + + + ++ + + ++ LI P + + A
Sbjct: 63 NHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMT-----DPGVGVIVTIVA 117
Query: 235 TGIKLALWFYCRSSGNKI----VRAYAKDHYFDVVTNVVGLIAAVLGDEFYWWIDPVGAI 290
+ L + R + VRA + DV+ N L+A L + D + A+
Sbjct: 118 LICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFAL 177
Query: 291 LLAIYTITNWSGTVQENAVSLVGQSASPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLY 350
+ IY + + E SL+ ++ E Q++ ++ P + +R G
Sbjct: 178 GIGIYILYSALRMGYEAVQSLLDRALPDEERQEII-DIVTSWPGVSGAHDLRTRQSGPTR 236
Query: 351 FVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERAFVHLD 392
F+++ +E+ + LPL +AH + + ++ I +H D
Sbjct: 237 FIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQD 278
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator
(CDF), transporter, zinc, membrane protein, cytosolic
domain; 2.84A {Thermotoga maritima}
Length = 107
Score = 63.6 bits (155), Expect = 7e-13
Identities = 17/88 (19%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 315 SASPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESL 374
++ + V++ P + VR G YF+E+DIE+ + +K+AH + +
Sbjct: 6 RTELDMYDDIF-AVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKI 64
Query: 375 QIKI-EELPEVERAFVHLDFECDHKPEH 401
+ ++ + ++E +H++ + + E
Sbjct: 65 RKEMLKRRDDIEDVTIHVEPLGNVEEEG 92
>3byp_A CZRB protein; membrane protein, zinc transporter, transport
protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1
PDB: 3byr_A
Length = 94
Score = 59.6 bits (145), Expect = 1e-11
Identities = 15/83 (18%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 311 LVGQSASPEVLQKLTYLVIQH-HPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHT 369
L+ + PE ++++ + + + V ++ G F+E + + D P++EAH
Sbjct: 2 LMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHR 61
Query: 370 IGESLQIKIEELPEVERAFVHLD 392
+ + L+ + + +A +H++
Sbjct: 62 LCDELERALAQAFPGLQATIHVE 84
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 1e-10
Identities = 86/490 (17%), Positives = 144/490 (29%), Gaps = 160/490 (32%)
Query: 11 MRVPLLLSEDGGNINEYGRERCCRNSV-------AS-LKCDFFSKLPEKVR---SGLDPE 59
R PL LS G++ V AS L+ F LPE + +P
Sbjct: 6 TR-PLTLSH--GSLE-------HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT 55
Query: 60 TPFHLDLSKTTGLIEGEKEYYEKQFATLKSFEEVDSLVSNNAIDEEKYLQEQVQHERAMN 119
TP L + K G + E + + F++V +L E YL+ H A
Sbjct: 56 TPAEL-VGKFLGYVSSLVE-----PSKVGQFDQVLNLCLTEF--ENCYLEGNDIHALAAK 107
Query: 120 ISNWANIFLLAFKI-----YATIQSGSLAIAASTLDSLLD--------LMA--GG----I 160
+ + L+ K + +L L+A GG
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 161 LWITHLSMKNINIYK-YP--IGKLRMQPVGIIIFAAVMATLGFQVLVQAVEQLIKDEPSE 217
+ L ++Y+ Y +G L I F+A + + +LI+
Sbjct: 168 DYFEELR----DLYQTYHVLVGDL-------IKFSA-----------ETLSELIRTTLDA 205
Query: 218 KM---TSLQLI-WL----------YAIMLSAT----GIKL-ALWFY---CRSSGNKIVRA 255
+ L ++ WL Y +LS I + L Y + G
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDY--LLSIPISCPLIGVIQLAHYVVTAKLLG--FTPG 261
Query: 256 YAKDHYFDVVTNVVGLIAAVL------GDEFYWWIDPVGAILLAIYTITNWSGT-VQENA 308
+ + + GL+ AV + F+ + T+ + G E
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFF-------VSVRKAITVLFFIGVRCYEAY 314
Query: 309 VSLVGQSASPEVLQKL--------TY-LVIQHHPQ---IKRVDTVRAYTFG------VLY 350
+ S P +L+ + L I + Q V+ ++ L
Sbjct: 315 PNT---SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 351 -----FVEVDIEL---PEDL-----PLKEAHTIGESLQIKI---EELPEVERAFVHLDFE 394
V + P+ L L++A Q +I E + F L
Sbjct: 372 NGAKNLV-----VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF--LPVA 424
Query: 395 CDHKPEHSVL 404
P HS L
Sbjct: 425 S---PFHSHL 431
Score = 34.6 bits (79), Expect = 0.070
Identities = 41/217 (18%), Positives = 66/217 (30%), Gaps = 67/217 (30%)
Query: 7 GDDHMRV---PLLLSEDGGNINEYGRERCCRNSVASLKCD----FFSKLPEKVRSGLDPE 59
G ++ V P L YG R + A D FS+ K + P
Sbjct: 373 GAKNLVVSGPPQSL---------YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 60 T-PFHLD-LSKTTGLIEGEKEYYEKQF--ATLK-----SFEEVDSLVSNNAIDEEKYLQE 110
PFH L + LI + F ++ +F+ D V + +I E + +
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER--IVD 481
Query: 111 QVQHERAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKN 170
+ W T Q + I LD GG + L+ +N
Sbjct: 482 CIIRLPV----KWE----------TTTQFKATHI--------LDFGPGGASGLGVLTHRN 519
Query: 171 INIYKYPIGKLRMQPVGI-IIFAAVMAT-----LGFQ 201
+ G G+ +I A + GF+
Sbjct: 520 KD------GT------GVRVIVAGTLDINPDDDYGFK 544
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 3e-06
Identities = 50/382 (13%), Positives = 97/382 (25%), Gaps = 95/382 (24%)
Query: 52 VRSGLDPETPFHLD-LSKTTGLIEGEKEYYEKQFATLKSFEEVDSLVSNNAIDEEKYLQE 110
V L F + + Y +Q L + + N + YL+
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPYLKL 140
Query: 111 QVQHERAMNISNWANIFLLAFKIYATIQSG--SLAIAASTLDSLLDLMAGGILWITHLSM 168
+ + + + N+ + + SG +A+ + M I W+
Sbjct: 141 R---QALLELRPAKNVLI-----DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN---- 188
Query: 169 KNINIYKYPIGKLRMQPVGIIIFAAVMATLGFQV---LVQAVEQ-----LIKDEPSEKMT 220
+ P ++ ++ L +Q+ + L ++
Sbjct: 189 ---------LKNCN-SPETVLE---MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 221 SLQLIWLYAIMLSATGIKLAL---WFYCRSSGNKIVRAYAKDHYFD------VVTNVVGL 271
L Y L L L K A F+ + T +
Sbjct: 236 RLLKSKPYENCL------LVLLNVQ------NAKAWNA------FNLSCKILLTTRFKQV 277
Query: 272 IAAVLGDEFYWWIDPVGAILLAIYTITNWSGTVQENAVSLVGQSASPEVLQKLTYLVIQH 331
+ I + + SL+ + Q L V+
Sbjct: 278 TDFLSAATTT-----------HISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLPREVLTT 325
Query: 332 HPQ----IKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQIKIEELPEVERA 387
+P+ I T+ + V+ + K I SL + E E +
Sbjct: 326 NPRRLSIIAESIRDGLATWD--NWKHVNCD-------KLTTIIESSL--NVLEPAEYRKM 374
Query: 388 FVHLD-FECDHK-PEHSVLCRL 407
F L F P +L +
Sbjct: 375 FDRLSVFPPSAHIPTI-LLSLI 395
Score = 29.8 bits (66), Expect = 2.1
Identities = 31/290 (10%), Positives = 66/290 (22%), Gaps = 120/290 (41%)
Query: 201 QVLVQAVEQLIKDEPSEKMTSLQLIWL--------------------YAIMLSA------ 234
+L + I +L+L W Y ++S
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 235 -TGIKLALWFYCRSSGNKIVRAYAKDHYFDVVT-------------------NVV--G-- 270
+ ++ R + +AK + V+ NV+ G
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYN----VSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 271 ------LIAAVLGDE----------FYWWIDPVG---------AILLAIYTITNWSGTVQ 305
+ V F W++ + +L + +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIF--WLN-LKNCNSPETVLEMLQKLLY------QID 210
Query: 306 ENAVSLVGQSASP-----EVLQKLTYLVIQH-HPQ-------IKRVDTVRAYTFG----- 347
N S S++ + +L L+ + ++ A+
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 348 ------VLYFVEVDIELPEDL-PLKEAHTIGESLQI-------KIEELPE 383
V F+ L T E + + ++LP
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.12
Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 39/67 (58%)
Query: 81 EKQFATLKSFEEVDSLVSNNAIDEEKYLQEQVQHERAMNISNWANIFLLAFKIYATIQSG 140
EKQ LK + SL K+YA +
Sbjct: 18 EKQ--ALKKLQ--ASL-----------------------------------KLYADDSAP 38
Query: 141 SLAIAAS 147
+LAI A+
Sbjct: 39 ALAIKAT 45
Score = 28.8 bits (63), Expect = 1.9
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 76 EKEYYEKQFATLKSFEEVDS---LVSNNAID 103
EK+ +K A+LK + + DS L ++
Sbjct: 18 EKQALKKLQASLKLYAD-DSAPALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 2.4
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 74 EGEK---EYYEKQFATLKSFEEVDSLVSNNAIDEEKYLQEQ 111
+ +K E+ ++Q E+V+ NN I ++ + Q+
Sbjct: 115 KAKKDLEEWNQRQS------EQVEKNKINNRIADKAFYQQP 149
>3rko_L NADH-quinone oxidoreductase subunit L; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 613
Score = 28.8 bits (65), Expect = 3.9
Identities = 17/132 (12%), Positives = 44/132 (33%), Gaps = 17/132 (12%)
Query: 185 PVGIIIFAAVMATLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSATGIKLALWFY 244
P+ +++ + +Q V + M +L++ +++ GI LA W +
Sbjct: 456 PLIVLLILSTFVGALIVPPLQGVLPQTTELAHGSMLTLEITSG---VVAVVGILLAAWLW 512
Query: 245 CRS-----------SGNKIVRAYAKDHYFDVVTN-VVGLIAAVLGDEFYWWIDPVGAILL 292
G + + FD + + V + DP+ +++
Sbjct: 513 LGKRTLVTSIANSAPGRLLSTWWYNAWGFDWLYDKVFVKPFLGIAWLL--KRDPLNSMMN 570
Query: 293 AIYTITNWSGTV 304
++ ++G
Sbjct: 571 IPAVLSRFAGKG 582
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.404
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,417,016
Number of extensions: 393180
Number of successful extensions: 690
Number of sequences better than 10.0: 1
Number of HSP's gapped: 683
Number of HSP's successfully gapped: 18
Length of query: 412
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 316
Effective length of database: 4,021,377
Effective search space: 1270755132
Effective search space used: 1270755132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)