RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015157
(412 letters)
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
{Escherichia coli [TaxId: 562]}
Length = 204
Score = 105 bits (262), Expect = 3e-27
Identities = 38/199 (19%), Positives = 80/199 (40%), Gaps = 1/199 (0%)
Query: 116 RAMNISNWANIFLLAFKIYATIQSGSLAIAASTLDSLLDLMAGGILWITHLSMKNINIYK 175
RA + LL KI+A +GS++I A+ +DSL+D+ A +
Sbjct: 7 RAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDN 66
Query: 176 YPIGKLRMQPVGIIIFAAVMATLGFQVLVQAVEQLIKDEPSEKMTSLQLIWLYAIMLSAT 235
+ G + + + + + ++ + + ++ LI P + +I ++
Sbjct: 67 HSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMT-DPGVGVIVTIVALICTI 125
Query: 236 GIKLALWFYCRSSGNKIVRAYAKDHYFDVVTNVVGLIAAVLGDEFYWWIDPVGAILLAIY 295
+ + R + ++ VRA + DV+ N L+A L + D + A+ + IY
Sbjct: 126 ILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALGIGIY 185
Query: 296 TITNWSGTVQENAVSLVGQ 314
+ + E SL+ +
Sbjct: 186 ILYSALRMGYEAVQSLLDR 204
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP)
{Escherichia coli [TaxId: 562]}
Length = 82
Score = 78.6 bits (194), Expect = 5e-19
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 315 SASPEVLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESL 374
+ E Q++ ++ P + +R G F+++ +E+ + LPL +AH + + +
Sbjct: 1 ALPDEERQEIID-IVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQV 59
Query: 375 QIKIEELPEVERAFVHLD 392
+ I +H D
Sbjct: 60 EQAILRRFPGSDVIIHQD 77
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus
thermophilus [TaxId: 274]}
Length = 82
Score = 67.8 bits (166), Expect = 5e-15
Identities = 14/76 (18%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 318 PEVLQKLTYLVIQH-HPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGESLQI 376
PE ++++ + + + V ++ G F+E + + D P++EAH + + L+
Sbjct: 4 PEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELER 63
Query: 377 KIEELPEVERAFVHLD 392
+ + +A +H++
Sbjct: 64 ALAQAFPGLQATIHVE 79
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 32.4 bits (72), Expect = 0.13
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 258 KDHYFDVVTN---VVGLIAAVLGDEFYWWIDPVGAILLAIYTITNWSGTVQENAVSLVG 313
+ V N +G I+ +G E +I V L+ I N T+ EN +G
Sbjct: 716 NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIG 774
>gi|152988212|ref|YP_001348091.1|(1-96:96) muconolactone
delta-isomerase [Pseudomonas aeruginosa PA7]
gi|150963370|gb|ABR85395.1| muconolactone
delta-isomerase [Pseudomonas aeruginosa PA7] E=1e-44
s/c=1.89 id=85% cov=101%
Length = 96
Score = 29.3 bits (66), Expect = 0.20
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Query: 349 LYFVEVDIELPEDLPLKEAHTIGESLQIKIEE 380
L+ V++ ++LP D+ + A ++K +E
Sbjct: 2 LFHVKMTVKLPADMDPQRA------ERLKADE 27
>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 99
Score = 26.3 bits (58), Expect = 3.0
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 365 KEAHTIGESLQIKIEELPEVERAFVHLDFECDHKPE 400
+T+ +L +I + +V+ A ++ P+
Sbjct: 21 NYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQ 56
>d1r4pa_ d.165.1.2 (A:) Shiga toxin, A-chain {Shigella dysenteriae,
toxin II [TaxId: 622]}
Length = 297
Score = 26.4 bits (58), Expect = 6.8
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 239 LALWFYCRSSGNKIVRAYAKDHYFDVVTNVVGLIAAVLGDEFYWWIDPVGAIL 291
+A+ C G + VRA ++ + G + + W + A L
Sbjct: 235 VAVILNCHHQGARSVRAVNEE--SQPECQITGDRPVIKINNTLWESNTAAAFL 285
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 26.3 bits (57), Expect = 7.6
Identities = 43/353 (12%), Positives = 104/353 (29%), Gaps = 54/353 (15%)
Query: 29 RERCCRNSVASLKCDFFSKLPEKVRSGLDPETPF--HLDLSKTTGLIEGEKEYYEKQFAT 86
+ + SL K PE+ ++ + + S +T L + + + +
Sbjct: 191 QHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLS 250
Query: 87 LKSFEEVDSLVSNNAIDEEKYLQEQVQHERAMNISNW-ANIFLLAFKIYATIQSGSLAIA 145
+K + L E ++ + + A + I
Sbjct: 251 VKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLII 310
Query: 146 ASTLDSLLDLMAGGILWITHLSMKNINIYKYPIGKLRMQPVGIIIFAAVMATLGFQVLVQ 205
+ L + A L L + N+ + + + + ++ V+
Sbjct: 311 HHDSEPNLLVRACNQL-GQFLQHRETNL----------RYLALESMCTLASSEFSHEAVK 359
Query: 206 A------VEQLIKDEPSEKMTSLQLIWLYAIMLSATGIKLALWFYCRSSGNKIVRAYAKD 259
+ + S + ++ L++ +A I + Y ++ I
Sbjct: 360 THIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREE---- 415
Query: 260 HYFDVVTNVVGLIAAVLGDEFYWWIDPVGAILLAIYTITNWSGTVQENAVSLVGQSASPE 319
+ V ++A ++ W++D +L + + + G S E
Sbjct: 416 -----IVLKVAILAEKYAVDYTWYVD----TILNL--------------IRIAGDYVSEE 452
Query: 320 VLQKLTYLVIQHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHTIGE 372
V ++ +VI D V+ Y ++ E+L + +GE
Sbjct: 453 VWYRVIQIVI-------NRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGE 498
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.404
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,551,696
Number of extensions: 73060
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 12
Length of query: 412
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 324
Effective length of database: 1,199,356
Effective search space: 388591344
Effective search space used: 388591344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)